Citrus Sinensis ID: 001624

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040--
Protein Sequence
MSVLQLSWLFLIPLLTNFGGINTVLVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSTDCCTWCGVDCDEAGRVIGLDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAPLNVCPPNSSKALPSAPASTDEIDWFFIVMAIGFAVGFGSVVAPLMFSRRVNKWYNNLINRFINCRFCV
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccEEEcccccEEEEEcccccccEEEcccccccccccccEEcccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccHHHHccccccccEEEcccccccccccHHHHHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccHHcccccccccEEEcccccccccccHHccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEEcHHHHcccccccEEEccccEEEEEccccccccccccEEEcccccccccccccccccccEEEcccccccccccHHHHHHccccccEEEccccccccccccccccccccccEEEccccccccccccccccccEEEcccccccccccccccccccccEEEEEcccccEEEccccccccccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEccccccEEEccccccccccccccEEEcccccccccccHHHHHccccccccccccccccccccccccccEEEEEEEEEEEEccHHHHHHHccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEHHHHHHHHHHHHHHHccccHHHHHHHHHHccccEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEccccEEEEEEccccccccccccccHHHccHHHcEEEccccccccccccHHHcccccccEEEcccccccccccHHHHcccccEEEEccccccccccccccccccHHHHHHcccccEEEcccccccccccHHHHHHHccccccEEEEcccccccccccHHHHccccccEEEcccccccccccHHHHcccccEEEEEccccccccccHHHcccccccEEEcccccccccccccHccccccEEEEEccccccccccHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccEEEEEccccccccccHHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccccccccccccEEEEcccccccccccHHHcccccccEEEEccccccccccHHHHHccccccEEEEcccccEEcccccccccccccEEEEcccccccccccccccccEEEEcccccccccccHHHHHccccccEEEEcccccccccccccccccccccEEEEcccccccccccccccccEEEEcccccccccccHHHccccccEEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHHHHHccEEEccccccccccccccccccccEEEEcccccccccccHHHHcccccEEEEcccccccccccHHHccccccEEEEEEcccccccccccccccccccEEEEEEccccccccccHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEcccccHHHHHHHcEEEEEEcccccccccccHHHHHHHHHcEEEcccccccccccHHccccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHEccc
Coil and Loop (DISEMBL)
MSVLQLSWLFLIPLltnfggintvlvsgqcqsDQQSLLLQMKSSLVFNSSLSFRMVQwsqstdcctwcgvdcdeagrvigldlseesisgridnsspllsLKYLQSLNLAFNMFnateipsglgnltnlthlnlsnagfagqipIQVSAMTRLVTLdlsssysfggplklenpnlsGLLQNLAELRALYLdgvnisapgIEWCQALSSLVPKLRVLSLSscylsgpihpslaklQSLSVIcldqndlsspvpeFLADFFNltslnlsssglngtfpeTILQVHTLQTldlsgnsllrgslpdfpknsslRTLMLSYANFsgvlpdsignlknlsrldlarcnlsgsiptSLAKLTQLVYLdlssnkfvgpipslhmsknlthldlsnnalpgaisstdwehLSNLVYVDLrnnalngsiprslfsIPMLQQLLLANnkfggpipefsnasysaldtldlsanrlegpipmsiFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYnnltvnasgdssfpsqVRTLRLAScklkvipnlksqsklfnldlsdnqisgeipnwvweigngGLEYLNLSHNLLsslqrpysisdlnlmTVLDLhsnqlqgniphpprnavlvdysnnsftssipgdignsmNFTIFFSLssnsitgvipETICRAKYLLVLDLsnnklsgkmptcliKMSDILGVLNlrgnslsgtlsvtfpgncglqtldlnenqlggtvpkslanCRKLevldlgnnkirdtFPCWLKNISSLRVLVLRSNsfygsitcrenddswpmlQIVDIasnnfggrvpqkCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSidfsrnnfdgpipekIGRLKslyglnfsqnafggpipstignLQQLESLDLsmnhlsdqipiqLANLTFLSVLNLShnnlegnipvstqlqsfsptsfegneglcgaplnvcppnsskalpsapastdeiDWFFIVMAIGFAVGFGSVVAPLMFSRRVNKWYNNLINRFINCRFCV
Flexible Loop (DISEMBL)
MSVLQLSWLFLIPLLTNFGGINTVLVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSTDCCTWCGVDCDEAGRVIGLDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLtvnasgdssfpsQVRTLRLASCKLkvipnlksqsklfNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDiasnnfggrvPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAPLNVCPPNSSKALPSAPASTDEIDWFFIVMAIGFAVGFGSVVAPLMFSRRVNKWYNNLINRFINCRFCV
Low Complexity Region (SEG)
MSVLQLSWLFLIPLLTNFGGINTVLVsgqcqsdqqslllqmksslVFNSSLSFRMVQWSQSTDCCTWCGVDCDEAGRVIGLDLSEESISGRIDNsspllslkylqslnlAFNMFNATEIPsglgnltnlthlnlsnAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADffnltslnlsssglngtfPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYlnlshnllsslQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNIsslrvlvlrsNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAPLNVCPPNSSKALPSAPASTDEIDWFFIVMAIGFAVGFGSVVAPLMFSRRVNKWYNNLINRFINCRFCV
Disordered region (IsUnstruct)
**VLQLSWLFLIPLLTNFGGINTVLVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSTDCCTWCGVDCDEAGRVIGLDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGD*SFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMM********NFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVS****************LCGAPL*******************EIDWFFIVMAIGFAVGFGSVVAPLMFSRRVNKWYNNLINRFINCRFC*
Disordered Region (DISOPRED)
*SVLQLSWLFLIPLLTNFGGINTVLVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSTDCCTWCGVDCDEAGRVIGLDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMS*******NFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGLCG**************************FFIVMAIGFAVGFGSVVAPLMFSRRVNKWYNNLINRFINCRFCV
Disordered Region (DISEMBL)
MSVLQLSWLFLIPLLTNFGGINTVLVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSTDCCTWCGVDCDEAGRVIGLDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAPLNVCPPNS*********STDEIDWFFIVMAIGFAVGFGSVVAPLMFSRRVNKWYNNLINRFINCRFCV
Disordered Region (DISPRO)
*SVLQLSWLFLIPLLTNFGGINTVLVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSTDCCTWCGVDCDEAGRVIGLDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAPLNVCP**************DEIDWFFIVMAIGFAVGFGSVVAPLMFSRRVNKWYNNLINRFINCRFCV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVLQLSWLFLIPLLTNFGGINTVLVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSTDCCTWCGVDCDEAGRVIGLDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAPLNVCPPNSSKALPSAPASTDEIDWFFIVMAIGFAVGFGSVVAPLMFSRRVNKWYNNLINRFINCRFCV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1042	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.667	0.821	0.364	4e-97
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.823	0.686	0.303	9e-80
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.697	0.580	0.320	1e-76
Q9FL28	1173	LRR receptor-like serine/	no	no	0.674	0.599	0.318	9e-75
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.600	0.575	0.320	4e-65
O49318	1124	Probable leucine-rich rep	no	no	0.613	0.568	0.295	1e-62
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.618	0.584	0.313	8e-61
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.650	0.568	0.304	8e-61
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.620	0.587	0.308	6e-58
Q9SSL9	1123	Leucine-rich repeat recep	no	no	0.621	0.577	0.310	6e-58

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  357 bits (915), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 271/743 (36%), Positives = 384/743 (51%), Gaps = 47/743 (6%)

Query: 326  SIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIP-SLHMSKNLTHLD 384
            S+  L+ L  LDL  CNL G IP+SL  L+ L  ++L  NKFVG IP S+     L HL 
Sbjct: 105  SLFKLQYLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLI 164

Query: 385  LSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIP 444
            L+NN L G I S+   +LS LV ++L +N L G IP S+  +  L+ L LA+N   G IP
Sbjct: 165  LANNVLTGEIPSS-LGNLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIP 223

Query: 445  EFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLI 504
              S  + S L  L L+ N+L G +P SI  L  L+++   +N L+G + ++    L  L 
Sbjct: 224  S-SLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPIS-FANLTKLS 281

Query: 505  RLELSYNNLTVNASGDSSFPSQVRTLRLAS--------CKLKVIPNLKS----------- 545
               LS NN T     D S    +    ++           L +IP+L+S           
Sbjct: 282  IFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTGP 341

Query: 546  --------QSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDL 597
                     +KL +L L  N++ G IP  +  + N  LE L++SHN  +    P +IS L
Sbjct: 342  IEFANTSSSTKLQDLILGRNRLHGPIPESISRLLN--LEELDISHNNFTGAIPP-TISKL 398

Query: 598  NLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSIT 657
              +  LDL  N L+G +P        +  S+NSF+S    +            L+SNS  
Sbjct: 399  VNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSF--ENTSQEEALIEELDLNSNSFQ 456

Query: 658  GVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNC 717
            G IP  IC+   L  LDLSNN  SG +P+C+   S  +  LNL  N+ SGTL   F    
Sbjct: 457  GPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKAT 516

Query: 718  GLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSF 777
             L +LD++ NQL G  PKSL NC+ LE++++ +NKI+D FP WL+++ SL VL LRSN F
Sbjct: 517  ELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKF 576

Query: 778  YGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELL 837
            YG +  R     +  L+I+DI+ NNF G +P    ++WK M +  +E      +  F   
Sbjct: 577  YGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTE--FWRY 634

Query: 838  TDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNA 897
             D +Y ++  V  KG +M   +I   F +IDFS N  +G IPE +G LK L  LN S NA
Sbjct: 635  ADSYYHEMEMVN-KGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNA 693

Query: 898  FGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQ 957
            F   IP  + NL +LE+LD+S N LS QIP  LA L+FLS +N SHN L+G +P  TQ Q
Sbjct: 694  FTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQ 753

Query: 958  SFSPTSFEGNEGLCGAPLNVCPP----NSSKALPSAPASTDE--IDWFFIVMAIGFAVGF 1011
                +SF  N GL G   ++C      N +  LP   +  +E   +W    +A G  V  
Sbjct: 754  RQKCSSFLDNPGLYGLE-DICRDTGALNPTSQLPEDLSEAEENMFNWVAAAIAYGPGVLC 812

Query: 1012 GSVVAPLMFSRRVNKWYNNLINR 1034
            G V+    ++   ++W+     R
Sbjct: 813  GLVIGHF-YTSHNHEWFTEKFGR 834

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  299 bits (765), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 303/1000 (30%), Positives = 455/1000 (45%), Gaps = 142/1000 (14%)

Query: 38   LLQMKSSLVFNSSLSFRMVQW-SQSTDCCTWCGVDCDEAG--RVIGLDLSEESISGRIDN 94
            LL++K SLV N      + QW S + + C+W GV CD  G  RVI L+L+   ++G I  
Sbjct: 30   LLEVKKSLVTNPQEDDPLRQWNSDNINYCSWTGVTCDNTGLFRVIALNLTGLGLTGSI-- 87

Query: 95   SSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLV 154
             SP                          G   NL HL+LS+    G IP  +S +T L 
Sbjct: 88   -SPWF------------------------GRFDNLIHLDLSSNNLVGPIPTALSNLTSLE 122

Query: 155  TLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLR 214
            +L     + F   L  E P+  G L N+  LR     G N     I   + L +LV  L+
Sbjct: 123  SL-----FLFSNQLTGEIPSQLGSLVNIRSLRI----GDNELVGDIP--ETLGNLV-NLQ 170

Query: 215  VLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGT 274
            +L+L+SC L+GPI   L +L  +  + L  N L  P+P  L +  +LT    + + LNGT
Sbjct: 171  MLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGT 230

Query: 275  FPETILQVHTLQTLDLSGNSLLRGSLP-DFPKNSSLRTLMLSYANFSGVLPDSIGNLKNL 333
             P  + ++  L+ L+L+ NS L G +P    + S L+ L L      G++P S+ +L NL
Sbjct: 231  IPAELGRLENLEILNLANNS-LTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNL 289

Query: 334  SRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSK--NLTHLDLSNNALP 391
              LDL+  NL+G IP     ++QL+ L L++N   G +P    S   NL  L LS   L 
Sbjct: 290  QTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLS 349

Query: 392  GAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPI-PEFSNAS 450
            G I   +     +L  +DL NN+L GSIP +LF +  L  L L NN   G + P  SN  
Sbjct: 350  GEI-PVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISN-- 406

Query: 451  YSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSY 510
             + L  L L  N LEG +P  I  L+ L++L L  N+ +G +    I    +L  +++  
Sbjct: 407  LTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIP-QEIGNCTSLKMIDMFG 465

Query: 511  NNLTVNASGDSSFPSQVRTLRLASCKL--KVIPNLKSQSKLFNLDLSDNQISGEIPNWVW 568
            N+             ++  L L   +L   +  +L +  +L  LDL+DNQ+SG IP+   
Sbjct: 466  NHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFG 525

Query: 569  EIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHP---PRNAVLVD 625
             +   GLE L L +N L     P S+  L  +T ++L  N+L G I HP     + +  D
Sbjct: 526  FL--KGLEQLMLYNNSLQG-NLPDSLISLRNLTRINLSHNRLNGTI-HPLCGSSSYLSFD 581

Query: 626  YSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMP 685
             +NN F   IP ++GNS N      L  N +TG IP T+ + + L +LD+S+N L+G +P
Sbjct: 582  VTNNGFEDEIPLELGNSQNLD-RLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIP 640

Query: 686  TCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEV 745
              L+ +   L  ++L  N LSG +         L  L L+ NQ   ++P  L NC KL V
Sbjct: 641  LQLV-LCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLV 699

Query: 746  LDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGG 805
            L L  N +  + P  + N+ +L VL L  N F GS+   +       L  + ++ N+  G
Sbjct: 700  LSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLP--QAMGKLSKLYELRLSRNSLTG 757

Query: 806  RVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFT 865
             +P                                              +E+ ++  + +
Sbjct: 758  EIP----------------------------------------------VEIGQLQDLQS 771

Query: 866  SIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQ 925
            ++D S NNF G IP  IG L  L  L+ S N   G +P ++G+++               
Sbjct: 772  ALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKS-------------- 817

Query: 926  IPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAPLNVCPPNSSKA 985
                      L  LN+S NNL G +    Q   +   SF GN GLCG+PL+ C    S  
Sbjct: 818  ----------LGYLNVSFNNLGGKL--KKQFSRWPADSFLGNTGLCGSPLSRCNRVRSNN 865

Query: 986  LPSAPASTDEIDWFFIVMAIGF--AVGFGSVVAPLMFSRR 1023
                 ++   +    I+ AI    A+G   +V  L F +R
Sbjct: 866  KQQGLSARSVV----IISAISALTAIGLMILVIALFFKQR 901

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  288 bits (738), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 267/832 (32%), Positives = 389/832 (46%), Gaps = 105/832 (12%)

Query: 216 LSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEF--------------------- 254
           L+LS   L+G I PS+ +  +L  I L  N L  P+P                       
Sbjct: 76  LNLSGLGLTGSISPSIGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSGD 135

Query: 255 ----LADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPD-FPKNSSL 309
               L    NL SL L  + LNGT PET   +  LQ L L+ +  L G +P  F +   L
Sbjct: 136 IPSQLGSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALA-SCRLTGLIPSRFGRLVQL 194

Query: 310 RTLMLSYANFSGVLPDSIGN------------------------LKNLSRLDLARCNLSG 345
           +TL+L      G +P  IGN                        LKNL  L+L   + SG
Sbjct: 195 QTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSG 254

Query: 346 SIPTSLAKLTQLVYLDLSSNKFVGPIPS-LHMSKNLTHLDLSNNALPGAISSTDWEHLSN 404
            IP+ L  L  + YL+L  N+  G IP  L    NL  LDLS+N L G I    W  ++ 
Sbjct: 255 EIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFW-RMNQ 313

Query: 405 LVYVDLRNNALNGSIPRSLFS-IPMLQQLLLANNKFGGPIP-EFSNASYSALDTLDLSAN 462
           L ++ L  N L+GS+P+++ S    L+QL L+  +  G IP E SN    +L  LDLS N
Sbjct: 314 LEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNC--QSLKLLDLSNN 371

Query: 463 RLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSS 522
            L G IP S+F+L  L  L L++N L GT+  ++I  L NL    L +NNL      +  
Sbjct: 372 TLTGQIPDSLFQLVELTNLYLNNNSLEGTLS-SSISNLTNLQEFTLYHNNLEGKVPKEIG 430

Query: 523 FPSQVRTLRLASCKL--KVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNL 580
           F  ++  + L   +   ++   + + ++L  +D   N++SGEIP+ +  + +  L  L+L
Sbjct: 431 FLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKD--LTRLHL 488

Query: 581 SHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVD---YSNNSFTSSIPG 637
             N L     P S+ + + MTV+DL  NQL G+IP        ++     NNS   ++P 
Sbjct: 489 RENELVG-NIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPD 547

Query: 638 DIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGV 697
            + N  N T   + SSN   G I   +C +   L  D++ N   G +P  L K ++ L  
Sbjct: 548 SLINLKNLT-RINFSSNKFNGSI-SPLCGSSSYLSFDVTENGFEGDIPLELGKSTN-LDR 604

Query: 698 LNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTF 757
           L L  N  +G +  TF     L  LD++ N L G +P  L  C+KL  +DL NN +    
Sbjct: 605 LRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVI 664

Query: 758 PCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVD--IASNNFGGRVPQKC--IT 813
           P WL  +  L  L L SN F GS+      + + +  I+   +  N+  G +PQ+   + 
Sbjct: 665 PTWLGKLPLLGELKLSSNKFVGSLPT----EIFSLTNILTLFLDGNSLNGSIPQEIGNLQ 720

Query: 814 SWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNN 873
           +  A+  +E++                                 +  LS    +  SRN 
Sbjct: 721 ALNALNLEENQLSGPLPST-------------------------IGKLSKLFELRLSRNA 755

Query: 874 FDGPIPEKIGRLKSLY-GLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLAN 932
             G IP +IG+L+ L   L+ S N F G IPSTI  L +LESLDLS N L  ++P Q+ +
Sbjct: 756 LTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGD 815

Query: 933 LTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAPLNVCPPNSSK 984
           +  L  LNLS+NNLEG +    Q   +   +F GN GLCG+PL+ C    SK
Sbjct: 816 MKSLGYLNLSYNNLEGKL--KKQFSRWQADAFVGNAGLCGSPLSHCNRAGSK 865

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  282 bits (722), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 247/776 (31%), Positives = 374/776 (48%), Gaps = 73/776 (9%)

Query: 216 LSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTF 275
           +SL    L G + P++A L  L V+ L  N  +  +P  +     L  L L  +  +G+ 
Sbjct: 77  VSLLEKQLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSI 136

Query: 276 PETILQVHTLQTLDLSGNSLLRGSLPD-FPKNSSLRTLMLSYANFSGVLPDSIGNLKNLS 334
           P  I ++  +  LDL  N+LL G +P+   K SSL  +   Y N +G +P+ +G+L +L 
Sbjct: 137 PSGIWELKNIFYLDLR-NNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQ 195

Query: 335 RLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIP-SLHMSKNLTHLDLSNNALPGA 393
               A  +L+GSIP S+  L  L  LDLS N+  G IP       NL  L L+ N L G 
Sbjct: 196 MFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGD 255

Query: 394 ISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSA 453
           I + +  + S+LV ++L +N L G IP  L ++  LQ L +  NK    IP  S    + 
Sbjct: 256 IPA-EIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPS-SLFRLTQ 313

Query: 454 LDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNL 513
           L  L LS N L GPI   I  L++L++L L SN   G     +I  LRNL  L + +NN+
Sbjct: 314 LTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFP-QSITNLRNLTVLTVGFNNI 372

Query: 514 TVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNG 573
           +     D                L ++ NL+      NL   DN ++G IP+        
Sbjct: 373 SGELPAD----------------LGLLTNLR------NLSAHDNLLTGPIPS-------- 402

Query: 574 GLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHP--PRNAVLVDYSNNSF 631
                              SIS+   + +LDL  NQ+ G IP      N   +    N F
Sbjct: 403 -------------------SISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHF 443

Query: 632 TSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKM 691
           T  IP DI N  N     S++ N++TG +   I + + L +L +S N L+G +P  +  +
Sbjct: 444 TGEIPDDIFNCSNLETL-SVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNL 502

Query: 692 SDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNN 751
            D L +L L  N  +G +         LQ L +  N L G +P+ + + + L VLDL NN
Sbjct: 503 KD-LNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNN 561

Query: 752 KIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKC 811
           K     P     + SL  L L+ N F GSI       S  +L   DI+ N   G +P + 
Sbjct: 562 KFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLK--SLSLLNTFDISDNLLTGTIPGEL 619

Query: 812 ITSWKAM-----MSDEDEAQSNFKDV-HFELLTDIFYQDVVTVTWKGREMELVKILSIFT 865
           + S K M      S+     +  K++   E++ +I   + +      R ++  K  ++FT
Sbjct: 620 LASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACK--NVFT 677

Query: 866 SIDFSRNNFDGPIPEKIGR-LKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSD 924
            +DFS+NN  G IP+++ + +  +  LN S+N+F G IP + GN+  L SLDLS N+L+ 
Sbjct: 678 -LDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTG 736

Query: 925 QIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGA--PLNVC 978
           +IP  LANL+ L  L L+ NNL+G++P S   ++ + +   GN  LCG+  PL  C
Sbjct: 737 EIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKKPLKPC 792

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  250 bits (639), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 241/753 (32%), Positives = 354/753 (47%), Gaps = 127/753 (16%)

Query: 239 VICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRG 298
           VIC    DLS  V E         +LNLS+SGL+G     I ++ +L TLDLS NS   G
Sbjct: 69  VIC----DLSGNVVE---------TLNLSASGLSGQLGSEIGELKSLVTLDLSLNSF-SG 114

Query: 299 SLPDFPKN-SSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQL 357
            LP    N +SL  L LS  +FSG +PD  G+L+NL+ L L R NLSG IP S+  L +L
Sbjct: 115 LLPSTLGNCTSLEYLDLSNNDFSGEVPDIFGSLQNLTFLYLDRNNLSGLIPASVGGLIEL 174

Query: 358 VYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNG 417
           V L +S N   G IP L          L N               S L Y+ L NN LNG
Sbjct: 175 VDLRMSYNNLSGTIPEL----------LGN--------------CSKLEYLALNNNKLNG 210

Query: 418 SIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKN 477
           S+P SL+ +  L +L ++NN  GG +  F +++   L +LDLS N  +G +P  I    +
Sbjct: 211 SLPASLYLLENLGELFVSNNSLGGRL-HFGSSNCKKLVSLDLSFNDFQGGVPPEIGNCSS 269

Query: 478 LKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKL 537
           L  L++    L GT+  +++  LR +  ++LS N L+ N   +    S + TL+L   +L
Sbjct: 270 LHSLVMVKCNLTGTIP-SSMGMLRKVSVIDLSDNRLSGNIPQELGNCSSLETLKLNDNQL 328

Query: 538 K--VIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSIS 595
           +  + P L    KL +L+L  N++SGEIP  +W+I +  L  + + +N L+  + P  ++
Sbjct: 329 QGEIPPALSKLKKLQSLELFFNKLSGEIPIGIWKIQS--LTQMLVYNNTLTG-ELPVEVT 385

Query: 596 DLNLMTVLDLHSNQLQGNIPHP---PRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLS 652
            L  +  L L +N   G+IP      R+   VD   N FT  IP  + +     +F  L 
Sbjct: 386 QLKHLKKLTLFNNGFYGDIPMSLGLNRSLEEVDLLGNRFTGEIPPHLCHGQKLRLFI-LG 444

Query: 653 SNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVT 712
           SN + G IP +I + K L  + L +NKLSG +P                           
Sbjct: 445 SNQLHGKIPASIRQCKTLERVRLEDNKLSGVLPE-------------------------- 478

Query: 713 FPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVL 772
           FP +  L  ++L  N   G++P+SL +C+ L  +DL  NK+    P  L N+ SL +L L
Sbjct: 479 FPESLSLSYVNLGSNSFEGSIPRSLGSCKNLLTIDLSQNKLTGLIPPELGNLQSLGLLNL 538

Query: 773 RSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDV 832
             N   G +  + +      L   D+ SN+  G +P     SWK++              
Sbjct: 539 SHNYLEGPLPSQLS--GCARLLYFDVGSNSLNGSIPSS-FRSWKSL-------------- 581

Query: 833 HFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLN 892
                                           +++  S NNF G IP+ +  L  L  L 
Sbjct: 582 --------------------------------STLVLSDNNFLGAIPQFLAELDRLSDLR 609

Query: 893 FSQNAFGGPIPSTIGNLQQLE-SLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIP 951
            ++NAFGG IPS++G L+ L   LDLS N  + +IP  L  L  L  LN+S+N L G + 
Sbjct: 610 IARNAFGGKIPSSVGLLKSLRYGLDLSANVFTGEIPTTLGALINLERLNISNNKLTGPLS 669

Query: 952 VSTQLQSFSPTSFEGNEGLCGAPLNVCPPNSSK 984
           V   L+S +      N+     P+N+   NSSK
Sbjct: 670 VLQSLKSLNQVDVSYNQFTGPIPVNLL-SNSSK 701

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  242 bits (617), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 221/747 (29%), Positives = 334/747 (44%), Gaps = 108/747 (14%)

Query: 242 LDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLP 301
           L   +LS  V   +    NL  LNL+ + L G  P  I     L+ + L+ N    GS+P
Sbjct: 92  LSSMNLSGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQF-GGSIP 150

Query: 302 -DFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYL 360
            +  K S LR+  +     SG LP+ IG+L NL  L     NL+G +P SL  L +L   
Sbjct: 151 VEINKLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTTF 210

Query: 361 DLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIP 420
               N F G IP                        T+     NL  + L  N ++G +P
Sbjct: 211 RAGQNDFSGNIP------------------------TEIGKCLNLKLLGLAQNFISGELP 246

Query: 421 RSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKI 480
           + +  +  LQ+++L  NKF G IP+    + ++L+TL L  N L GPIP  I  +K+LK 
Sbjct: 247 KEIGMLVKLQEVILWQNKFSGFIPK-DIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKK 305

Query: 481 LMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVI 540
           L L  N+LNGT+                               P ++  L          
Sbjct: 306 LYLYQNQLNGTI-------------------------------PKELGKL---------- 324

Query: 541 PNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLM 600
                 SK+  +D S+N +SGEIP  + +I    L  L L  N L+ +  P  +S L  +
Sbjct: 325 ------SKVMEIDFSENLLSGEIPVELSKISE--LRLLYLFQNKLTGII-PNELSKLRNL 375

Query: 601 TVLDLHSNQLQGNIPHPPRNAV---LVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSIT 657
             LDL  N L G IP   +N      +   +NS +  IP  +G      +    S N ++
Sbjct: 376 AKLDLSINSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVV-DFSENQLS 434

Query: 658 GVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNC 717
           G IP  IC+   L++L+L +N++ G +P  +++   +L  L + GN L+G          
Sbjct: 435 GKIPPFICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQ-LRVVGNRLTGQFPTELCKLV 493

Query: 718 GLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSF 777
            L  ++L++N+  G +P  +  C+KL+ L L  N+     P  +  +S+L    + SNS 
Sbjct: 494 NLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSL 553

Query: 778 YGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELL 837
            G I     +    MLQ +D++ N+F G +P +                 +   +    L
Sbjct: 554 TGPIPSEIAN--CKMLQRLDLSRNSFIGSLPPEL---------------GSLHQLEILRL 596

Query: 838 TDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSL-YGLNFSQN 896
           ++  +   +  T        +  L+  T +    N F G IP ++G L SL   +N S N
Sbjct: 597 SENRFSGNIPFT--------IGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYN 648

Query: 897 AFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQL 956
            F G IP  IGNL  L  L L+ NHLS +IP    NL+ L   N S+NNL G +P +   
Sbjct: 649 DFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQIF 708

Query: 957 QSFSPTSFEGNEGLCGAPLNVCPPNSS 983
           Q+ + TSF GN+GLCG  L  C P+ S
Sbjct: 709 QNMTLTSFLGNKGLCGGHLRSCDPSHS 735

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  236 bits (602), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 236/753 (31%), Positives = 344/753 (45%), Gaps = 109/753 (14%)

Query: 263 SLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKN-SSLRTLMLSYANFSG 321
           SLNLSS  L+G    +I  +  L+ LDLS N L  G +P    N SSL  L L+   F G
Sbjct: 77  SLNLSSMVLSGKLSPSIGGLVHLKQLDLSYNGL-SGKIPKEIGNCSSLEILKLNNNQFDG 135

Query: 322 VLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIP-SLHMSKNL 380
            +P  IG L +L  L +    +SGS+P  +  L  L  L   SN   G +P S+   K L
Sbjct: 136 EIPVEIGKLVSLENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRL 195

Query: 381 THLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFG 440
           T      N + G++ S +     +LV + L  N L+G +P+ +  +  L Q++L  N+F 
Sbjct: 196 TSFRAGQNMISGSLPS-EIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFS 254

Query: 441 GPIP-EFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQR 499
           G IP E SN +  +L+TL L  N+L GPIP  + +L++L+ L L  N LNGT+       
Sbjct: 255 GFIPREISNCT--SLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTI------- 305

Query: 500 LRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQI 559
                                   P ++  L  A                  +D S+N +
Sbjct: 306 ------------------------PREIGNLSYA----------------IEIDFSENAL 325

Query: 560 SGEIPNWVWEIGN-GGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIP--- 615
           +GEIP    E+GN  GLE L L  N L+    P  +S L  ++ LDL  N L G IP   
Sbjct: 326 TGEIP---LELGNIEGLELLYLFENQLTG-TIPVELSTLKNLSKLDLSINALTGPIPLGF 381

Query: 616 HPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDL 675
              R   ++    NS + +IP  +G   +  +   +S N ++G IP  +C    +++L+L
Sbjct: 382 QYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVL-DMSDNHLSGRIPSYLCLHSNMIILNL 440

Query: 676 SNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPK 735
             N LSG +PT  I     L  L L  N+L G           +  ++L +N+  G++P+
Sbjct: 441 GTNNLSGNIPTG-ITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPR 499

Query: 736 SLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSI-----TCRENDDSW 790
            + NC  L+ L L +N      P  +  +S L  L + SN   G +      C+      
Sbjct: 500 EVGNCSALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCK------ 553

Query: 791 PMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTW 850
            MLQ +D+  NNF G +P +  + ++                  ELL       +     
Sbjct: 554 -MLQRLDMCCNNFSGTLPSEVGSLYQ-----------------LELL------KLSNNNL 589

Query: 851 KGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSL-YGLNFSQNAFGGPIPSTIGNL 909
            G     +  LS  T +    N F+G IP ++G L  L   LN S N   G IP  + NL
Sbjct: 590 SGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNL 649

Query: 910 QQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEG 969
             LE L L+ N+LS +IP   ANL+ L   N S+N+L G IP+   L++ S +SF GNEG
Sbjct: 650 VMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIPL---LRNISMSSFIGNEG 706

Query: 970 LCGAPLNVC------PPNSSKALPSAPASTDEI 996
           LCG PLN C       P+ S   P    S+  I
Sbjct: 707 LCGPPLNQCIQTQPFAPSQSTGKPGGMRSSKII 739

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  236 bits (601), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 252/827 (30%), Positives = 376/827 (45%), Gaps = 149/827 (18%)

Query: 297  RGSLP-DFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLT 355
            RG +P +     +LR L L+   FSG +P  I NLK+L  LDL+  +L+G +P  L++L 
Sbjct: 78   RGQIPKEISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGLLPRLLSELP 137

Query: 356  QLVYLDLSSNKFVGPIP-SLHMS-KNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNN 413
            QL+YLDLS N F G +P S  +S   L+ LD+SNN+L G I   +   LSNL  + +  N
Sbjct: 138  QLLYLDLSDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIP-PEIGKLSNLSNLYMGLN 196

Query: 414  ALNGSIPRSLFSIPMLQQLLLANNKFGGPIP-EFSNASYSALDTLDLSANRLEGPIPMSI 472
            + +G IP  + +I +L+     +  F GP+P E S   +  L  LDLS N L+  IP S 
Sbjct: 197  SFSGQIPSEIGNISLLKNFAAPSCFFNGPLPKEISKLKH--LAKLDLSYNPLKCSIPKSF 254

Query: 473  FELKNLKILMLSSNKLNGTV--QLAAIQRLRNLIRLELSYNNLTVNASGDSSFP---SQV 527
             EL NL IL L S +L G +  +L   + L++L+   LS+N+L+         P   S++
Sbjct: 255  GELHNLSILNLVSAELIGLIPPELGNCKSLKSLM---LSFNSLS------GPLPLELSEI 305

Query: 528  RTLRLASCKLKV---IPNLKSQSKLFN-LDLSDNQISGEIPNWVWEI------------- 570
              L  ++ + ++   +P+   + K+ + L L++N+ SGEIP+ + +              
Sbjct: 306  PLLTFSAERNQLSGSLPSWMGKWKVLDSLLLANNRFSGEIPHEIEDCPMLKHLSLASNLL 365

Query: 571  ---------GNGGLEYLNLSHNLLSSLQR-----------------------PYSISDLN 598
                     G+G LE ++LS NLLS                           P  +  L 
Sbjct: 366  SGSIPRELCGSGSLEAIDLSGNLLSGTIEEVFDGCSSLGELLLTNNQINGSIPEDLWKLP 425

Query: 599  LMTVLDLHSNQLQGNIPH---PPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNS 655
            LM  LDL SN   G IP       N +    S N     +P +IGN+ +      LS N 
Sbjct: 426  LMA-LDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLV-LSDNQ 483

Query: 656  ITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDI----LGVLNLRG--------- 702
            +TG IP  I +   L VL+L+ N   GK+P  L   + +    LG  NL+G         
Sbjct: 484  LTGEIPREIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITAL 543

Query: 703  ----------NSLSGTL---------SVTFPGNCGLQ---TLDLNENQLGGTVPKSLANC 740
                      N+LSG++          +  P    LQ     DL+ N+L G +P+ L  C
Sbjct: 544  AQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGEC 603

Query: 741  RKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIAS 800
              L  + L NN +    P  L  +++L +L L  N+  GSI  +E  +S   LQ +++A+
Sbjct: 604  LVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIP-KEMGNSL-KLQGLNLAN 661

Query: 801  NNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKI 860
            N   G +P+                        F LL  +   ++      G     +  
Sbjct: 662  NQLNGHIPES-----------------------FGLLGSLVKLNLTKNKLDGPVPASLGN 698

Query: 861  LSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMN 920
            L   T +D S NN  G +  ++  ++ L GL   QN F G IPS +GNL QLE LD+S N
Sbjct: 699  LKELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSEN 758

Query: 921  HLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAPLNVCPP 980
             LS +IP ++  L  L  LNL+ NNL G +P     Q  S     GN+ LCG  +     
Sbjct: 759  LLSGEIPTKICGLPNLEFLNLAKNNLRGEVPSDGVCQDPSKALLSGNKELCGRVVGSDCK 818

Query: 981  NSSKALPSAPASTDEIDWFFIVMAIGFAVGFGSVVAPLMFSRRVNKW 1027
                 L SA        W    + +GF +    +V   +FS R  +W
Sbjct: 819  IEGTKLRSA--------WGIAGLMLGFTI----IVFVFVFSLR--RW 851

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  226 bits (577), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 219/711 (30%), Positives = 336/711 (47%), Gaps = 64/711 (9%)

Query: 307  SSLRTLM---LSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLS 363
            + LRT+    L+  N SG L   I  L  L +L+++   +SG IP  L+    L  LDL 
Sbjct: 64   THLRTVTSVDLNGMNLSGTLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLC 123

Query: 364  SNKFVGPIP-SLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRS 422
            +N+F G IP  L M   L  L L  N L G+I      +LS+L  + + +N L G IP S
Sbjct: 124  TNRFHGVIPIQLTMIITLKKLYLCENYLFGSIPR-QIGNLSSLQELVIYSNNLTGVIPPS 182

Query: 423  LFSIPMLQQLLLANNKFGGPIP-EFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKIL 481
            +  +  L+ +    N F G IP E S     +L  L L+ N LEG +P  + +L+NL  L
Sbjct: 183  MAKLRQLRIIRAGRNGFSGVIPSEISGCE--SLKVLGLAENLLEGSLPKQLEKLQNLTDL 240

Query: 482  MLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKL---- 537
            +L  N+L+G +   ++  +  L  L L  N  T +   +    ++++ L L + +L    
Sbjct: 241  ILWQNRLSGEIP-PSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEI 299

Query: 538  -KVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISD 596
             + I NL   +++   D S+NQ++G IP     I N  L+ L+L  N+L     P  + +
Sbjct: 300  PREIGNLIDAAEI---DFSENQLTGFIPKEFGHILN--LKLLHLFENILLG-PIPRELGE 353

Query: 597  LNLMTVLDLHSNQLQGNIPHPPRN-AVLVDYS--NNSFTSSIPGDIGNSMNFTIFFSLSS 653
            L L+  LDL  N+L G IP   +    LVD    +N     IP  IG   NF++   +S+
Sbjct: 354  LTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVL-DMSA 412

Query: 654  NSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTF 713
            NS++G IP   CR + L++L L +NKLSG +P  L K    L  L L  N L+G+L +  
Sbjct: 413  NSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDL-KTCKSLTKLMLGDNQLTGSLPIEL 471

Query: 714  PGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLR 773
                 L  L+L++N L G +   L   + LE L L NN      P  + N++ +    + 
Sbjct: 472  FNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNIS 531

Query: 774  SNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVH 833
            SN   G I   +   S   +Q +D++ N F G + Q+                       
Sbjct: 532  SNQLTGHIP--KELGSCVTIQRLDLSGNKFSGYIAQE----------------------- 566

Query: 834  FELLTDIFYQDVVTVT---WKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSL-Y 889
               L  + Y +++ ++     G        L+    +    N     IP ++G+L SL  
Sbjct: 567  ---LGQLVYLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSENIPVELGKLTSLQI 623

Query: 890  GLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGN 949
             LN S N   G IP ++GNLQ LE L L+ N LS +IP  + NL  L + N+S+NNL G 
Sbjct: 624  SLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGT 683

Query: 950  IPVSTQLQSFSPTSFEGNEGLCGAPLNVCPPNSSKALPSAPASTDEIDWFF 1000
            +P +   Q    ++F GN GLC +  + C        P  P S  +++W  
Sbjct: 684  VPDTAVFQRMDSSNFAGNHGLCNSQRSHCQ-------PLVPHSDSKLNWLI 727

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SSL9|PEPR1_ARATH Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1

 Score =  226 bits (577), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 217/698 (31%), Positives = 328/698 (46%), Gaps = 50/698 (7%)

Query: 65  CTWCGVDCDEAGRVIGLDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLG 124
           C W G+ CD++  V  L+ +   +SG++     +  LK LQ L+L+ N F+ T IPS LG
Sbjct: 64  CNWFGITCDDSKNVASLNFTRSRVSGQL--GPEIGELKSLQILDLSTNNFSGT-IPSTLG 120

Query: 125 NLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAE 184
           N T L  L+LS  GF+ +IP  + ++ RL  L L  ++  G         L   L  + +
Sbjct: 121 NCTKLATLDLSENGFSDKIPDTLDSLKRLEVLYLYINFLTG--------ELPESLFRIPK 172

Query: 185 LRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQ 244
           L+ LYLD  N++ P  +       LV     LS+ +   SG I  S+    SL ++ L +
Sbjct: 173 LQVLYLDYNNLTGPIPQSIGDAKELVE----LSMYANQFSGNIPESIGNSSSLQILYLHR 228

Query: 245 NDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFP 304
           N L   +PE L    NLT+L + ++ L G           L TLDLS N    G  P   
Sbjct: 229 NKLVGSLPESLNLLGNLTTLFVGNNSLQGPVRFGSPNCKNLLTLDLSYNEFEGGVPPALG 288

Query: 305 KNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSS 364
             SSL  L++   N SG +P S+G LKNL+ L+L+   LSGSIP  L   + L  L L+ 
Sbjct: 289 NCSSLDALVIVSGNLSGTIPSSLGMLKNLTILNLSENRLSGSIPAELGNCSSLNLLKLND 348

Query: 365 NKFVGPIPS-LHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSL 423
           N+ VG IPS L   + L  L+L  N   G I    W+  S L  + +  N L G +P  +
Sbjct: 349 NQLVGGIPSALGKLRKLESLELFENRFSGEIPIEIWKSQS-LTQLLVYQNNLTGELPVEM 407

Query: 424 FSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILML 483
             +  L+   L NN F G IP     + S+L+ +D   N+L G IP ++   + L+IL L
Sbjct: 408 TEMKKLKIATLFNNSFYGAIPPGLGVN-SSLEEVDFIGNKLTGEIPPNLCHGRKLRILNL 466

Query: 484 SSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNL 543
            SN L+GT+  A+I   + + R  L  NNL+                        ++P  
Sbjct: 467 GSNLLHGTIP-ASIGHCKTIRRFILRENNLS-----------------------GLLPEF 502

Query: 544 KSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVL 603
                L  LD + N   G IP  +    N  L  +NLS N  +  Q P  + +L  +  +
Sbjct: 503 SQDHSLSFLDFNSNNFEGPIPGSLGSCKN--LSSINLSRNRFTG-QIPPQLGNLQNLGYM 559

Query: 604 DLHSNQLQGNIPHPPRNAVLV---DYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVI 660
           +L  N L+G++P    N V +   D   NS   S+P +  N    T    LS N  +G I
Sbjct: 560 NLSRNLLEGSLPAQLSNCVSLERFDVGFNSLNGSVPSNFSNWKGLTTLV-LSENRFSGGI 618

Query: 661 PETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQ 720
           P+ +   K L  L ++ N   G++P+ +  + D++  L+L GN L+G +         L 
Sbjct: 619 PQFLPELKKLSTLQIARNAFGGEIPSSIGLIEDLIYDLDLSGNGLTGEIPAKLGDLIKLT 678

Query: 721 TLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFP 758
            L+++ N L G++   L     L  +D+ NN+     P
Sbjct: 679 RLNISNNNLTGSL-SVLKGLTSLLHVDVSNNQFTGPIP 715

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1042
359481298	1070	PREDICTED: LRR receptor-like serine/thre	0.991	0.965	0.582	0.0
359481296	1075	PREDICTED: receptor-like protein 12-like	0.990	0.96	0.575	0.0
224139184	1032	predicted protein [Populus trichocarpa]	0.983	0.993	0.573	0.0
359481300	1054	PREDICTED: leucine-rich repeat receptor	0.957	0.946	0.593	0.0
147806063	1032	hypothetical protein VITISV_032508 [Viti	0.955	0.965	0.587	0.0
214011438	1128	GbVe [Gossypium barbadense]	0.985	0.910	0.569	0.0
359481293	1197	PREDICTED: leucine-rich repeat receptor	0.972	0.846	0.585	0.0
359481304	1057	PREDICTED: LRR receptor-like serine/thre	0.971	0.957	0.566	0.0
237899605	1139	verticillium wilt disease resistance pro	0.995	0.910	0.547	0.0
350535939	1139	verticillium wilt disease resistance pro	0.995	0.910	0.547	0.0

>gi|359481298|ref|XP_003632604.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score = 1129 bits (2919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 611/1049 (58%), Positives = 755/1049 (71%), Gaps = 16/1049 (1%)

Query: 1    MSVLQLSWLFLIPLLTNFGGINTVLVSGQCQSD-------QQSLLLQMKSSLVFNSSLSF 53
            M +   SWL+ +PL +   GI+  LVSG+C SD       Q SLLLQ+K++L FN + S 
Sbjct: 1    MRIALFSWLYFLPLCSIVFGIHVALVSGECLSDGSICLEDQMSLLLQLKNTLKFNVAASS 60

Query: 54   RMVQWSQSTDCCTWCGVDCDEAGRVIGLDLSEESISGRIDNSSPLLSLKYLQSLNLAFNM 113
            ++V W+ S DCC+W GV  D  G V+ LDLS +SI G  +N+S + SL+YLQSLNLA N 
Sbjct: 61   KLVSWNPSMDCCSWGGVTWDATGHVVALDLSSQSIYGGFNNTSSIFSLQYLQSLNLADNS 120

Query: 114  FNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENP 173
            FN+++IPSG G L NL +LNLSNAGF+GQIPI+VS +T+LVT+D S  Y     LKLENP
Sbjct: 121  FNSSQIPSGFGKLGNLMYLNLSNAGFSGQIPIEVSCLTKLVTIDFSVFYLGVPTLKLENP 180

Query: 174  NLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAK 233
            NL  L+QNL ELR LYL+GVNISA G EWCQALSS VP L+VLSL SCYLSGP+  SL K
Sbjct: 181  NLRMLVQNLTELRELYLNGVNISAQGKEWCQALSSSVPNLQVLSLPSCYLSGPLDSSLQK 240

Query: 234  LQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGN 293
            L+SLS I LD N+ S+PVPEFLA+F NLT L LSS GLNGTFPE I QV TLQ LDLS N
Sbjct: 241  LRSLSSIRLDGNNFSAPVPEFLANFSNLTQLRLSSCGLNGTFPEKIFQVPTLQILDLSNN 300

Query: 294  SLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAK 353
             LL GSLP+FP+N SL TL+L    FSG +P+SIGNLK L+R++LARCN SG IP S A 
Sbjct: 301  KLLLGSLPEFPQNGSLETLVLPDTKFSGKVPNSIGNLKRLTRIELARCNFSGPIPNSTAN 360

Query: 354  LTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNN 413
            L QLVYLDLS NKF GPIP   +SKNLT ++LS+N L G I S+  + L NLV +DLR+N
Sbjct: 361  LAQLVYLDLSENKFSGPIPPFSLSKNLTRINLSHNYLTGPIPSSHLDGLVNLVILDLRDN 420

Query: 414  ALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIF 473
            +LNGS+P  LFS+P LQ++ L+NN+F GP+ +FS    S LDTLDLS+N LEG IP+SIF
Sbjct: 421  SLNGSLPMPLFSLPSLQKIQLSNNQFSGPLSKFSVVP-SVLDTLDLSSNNLEGQIPVSIF 479

Query: 474  ELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNAS---GDSSFPSQVRTL 530
            +L+ L IL LSSNK NGTV L++ Q+L NL  L LSYNNL++N+S           + TL
Sbjct: 480  DLQCLNILDLSSNKFNGTVLLSSFQKLGNLTTLSLSYNNLSINSSVGNPTLPLLLNLTTL 539

Query: 531  RLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQR 590
            +LASCKL+ +P+L +QS+L  LDLSDNQI G IPNW+W+IGN  L +LNLSHNLL  LQ 
Sbjct: 540  KLASCKLRTLPDLSTQSRLTYLDLSDNQICGNIPNWIWKIGNCSLAHLNLSHNLLEDLQE 599

Query: 591  PYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFS 650
            P S +    +++LDLHSNQL G IP PP+    VDYS+N FTSSIP  IG  ++FTIFFS
Sbjct: 600  PLS-NFTPYLSILDLHSNQLHGQIPTPPQFCSYVDYSDNRFTSSIPDGIGVYISFTIFFS 658

Query: 651  LSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLS 710
            LS N+ITG IP +IC A YL VLD S+N LSGK+P+CLI+    LGVLNLR N+ SG + 
Sbjct: 659  LSKNNITGSIPRSICNATYLQVLDFSDNHLSGKIPSCLIEYG-TLGVLNLRRNNFSGAIP 717

Query: 711  VTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVL 770
              FP NC LQTLDL+ N + G +P SLANC  LEVL+LGNN++  TFPC LKNI++LRVL
Sbjct: 718  GKFPVNCLLQTLDLSRNHIEGKIPGSLANCTALEVLNLGNNQMNGTFPCLLKNITTLRVL 777

Query: 771  VLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFK 830
            VLR N+F GSI C +++ +W MLQIVD+A NNF G++P  C ++W AMM+ E+E QS  K
Sbjct: 778  VLRGNNFQGSIGCCKSNSTWAMLQIVDLAFNNFSGKLPATCFSTWTAMMAGENEVQSKLK 837

Query: 831  DVHFELL--TDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSL 888
             + F +L  + ++YQD VTVT KG EMELVK+L+++TSID S NNF G IPE +G   SL
Sbjct: 838  HLQFRVLQFSQLYYQDAVTVTSKGLEMELVKVLTLYTSIDLSCNNFQGDIPEVMGNFTSL 897

Query: 889  YGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEG 948
            Y LN S N F G IPS+IGNL+QLESLDLS N LS +IP QLANL FLSVLNLS N L G
Sbjct: 898  YVLNLSHNGFTGHIPSSIGNLRQLESLDLSQNRLSGEIPTQLANLNFLSVLNLSFNQLVG 957

Query: 949  NIPVSTQLQSFSPTSFEGNEGLCGAPLNV-CPPNSSKALPSAPASTDEIDWFFIVMAIGF 1007
             IP   Q+Q+FS TS+EGN+ LCG PL++ C     +       S  EI W +I   IGF
Sbjct: 958  RIPPGNQMQTFSETSYEGNKELCGWPLDLSCTDPPPEFDDRHSGSRMEIKWEYIAPEIGF 1017

Query: 1008 AVGFGSVVAPLMFSRRVNKWYNNLINRFI 1036
              G G V+ PL+  RR  K Y   ++R +
Sbjct: 1018 VTGLGIVIWPLVLCRRWRKCYYKHVDRIL 1046

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481296|ref|XP_003632603.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score = 1109 bits (2869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 606/1053 (57%), Positives = 763/1053 (72%), Gaps = 21/1053 (1%)

Query: 1    MSVLQLSWLFLIPLLTNFGGINTVLVSGQCQSD-------QQSLLLQMKSSLVFNSSLSF 53
            M +   SWL+ +PL +   GI+  LVSG+C SD       Q SLLLQ+K++L FN + S 
Sbjct: 1    MRIALFSWLYFLPLCSIVFGIHVALVSGECLSDGSICLEDQMSLLLQLKNTLKFNVAASS 60

Query: 54   RMVQWSQSTDCCTWCGVDCDEAGRVIGLDLSEESISGRIDNSSPLLSLKYLQSLNLAFNM 113
            ++V W+ STDCC+W GV  D  G V+ LDLS +SI G  +NSS + SL+YLQSLNLA N 
Sbjct: 61   KLVSWNPSTDCCSWGGVTWDATGHVVALDLSSQSIYGGFNNSSSIFSLQYLQSLNLANNT 120

Query: 114  FNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGP-LKLEN 172
            F +++IPSG   L +L +LNLSNAGF+GQIPI++S +T+LVT+D S  Y  G P L LEN
Sbjct: 121  FYSSQIPSGFSKLDHLIYLNLSNAGFSGQIPIEISCLTKLVTIDFSVFYLPGVPTLTLEN 180

Query: 173  PNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLA 232
            PNL  L+QNL ELR LYL+GVNISA G EWCQALSS VP L+VLSL+SCYL GP+  SL 
Sbjct: 181  PNLRMLVQNLTELRELYLNGVNISAQGKEWCQALSSSVPNLQVLSLASCYLYGPLDSSLQ 240

Query: 233  KLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSG 292
            KL+SLS I LD N+ S+PV EFLA+F NLT L LSS GL GTFPE I QV TLQ LDLS 
Sbjct: 241  KLRSLSSIRLDSNNFSAPVLEFLANFSNLTQLRLSSCGLYGTFPEKIFQVPTLQILDLSN 300

Query: 293  NSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLA 352
            N LL GSLP+FP+N SL TL+LS   FSG +P SIGNLK L+R++LA C+ SG+IP S+A
Sbjct: 301  NKLLLGSLPEFPQNGSLGTLVLSDTKFSGKVPYSIGNLKRLTRIELAGCDFSGAIPNSMA 360

Query: 353  KLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRN 412
             LTQLVYLD S NKF GPIP   +SKNLT ++LS+N L G I S+  + L NLV +DLR+
Sbjct: 361  DLTQLVYLDSSYNKFSGPIPPFSLSKNLTRINLSHNYLTGPIPSSHLDGLVNLVTLDLRD 420

Query: 413  NALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSI 472
            N+LNGS+P  LFS+P LQ++ L+NN+F GP+ +FS   +S L+TLDLS+N LEGPIP+S+
Sbjct: 421  NSLNGSLPMLLFSLPSLQKIQLSNNQFSGPLSKFSVVPFSVLETLDLSSNNLEGPIPISV 480

Query: 473  FELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNAS---GDSSFPSQVRT 529
            F+L+ L IL LSSNK NGTV L++ Q L NL  L LSYNNL++N+S           + T
Sbjct: 481  FDLQCLNILDLSSNKFNGTVLLSSFQNLGNLTTLSLSYNNLSINSSVGNPTLPLLLNLTT 540

Query: 530  LRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQ 589
            L+LASCKL+ +P+L +QS+L +LDLSDNQI G IPNW+W+ GNG L +LNLSHNLL  LQ
Sbjct: 541  LKLASCKLRTLPDLSTQSRLTHLDLSDNQIPGSIPNWIWKNGNGSLLHLNLSHNLLEDLQ 600

Query: 590  RPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFF 649
              +S +    +++LDLHSNQL G IP PP+ ++ VDYS+NSF SSIP DIG  ++FT+FF
Sbjct: 601  ETFS-NFTPYLSILDLHSNQLHGQIPTPPQFSIYVDYSDNSFNSSIPDDIGIYISFTLFF 659

Query: 650  SLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTL 709
            SLS N+ITGVIPE+IC A YL VLD S+N  SGK+P+CLI+ ++ L VLNL  N  +GT+
Sbjct: 660  SLSKNNITGVIPESICNASYLQVLDFSDNAFSGKIPSCLIQ-NEALAVLNLGRNKFNGTI 718

Query: 710  SVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRV 769
               F   C LQTLDLNEN L G + +SLANC++LE+L+LGNN+I D FPCWLKNI++LRV
Sbjct: 719  PGEFRHKCLLQTLDLNENLLEGNITESLANCKELEILNLGNNQIDDIFPCWLKNITNLRV 778

Query: 770  LVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNF 829
            LVLR N F+G I C  ++ +W MLQIVD+A NNF G++P+KC ++W AMM+ E+E QS  
Sbjct: 779  LVLRGNKFHGPIGCLRSNSTWAMLQIVDLADNNFSGKLPEKCFSTWTAMMAGENEVQSKL 838

Query: 830  KDVHFELL--TDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKS 887
            K + F +L  + ++YQD VTVT KG EMELVK+L+++TSID S NNF G IPE +G   S
Sbjct: 839  KHLQFRVLQFSQLYYQDAVTVTSKGLEMELVKVLTLYTSIDLSCNNFQGDIPEVMGNFTS 898

Query: 888  LYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLE 947
            LYGLN S N F G IPS+IGNL+QLESLDLS N LS +IP QLANL FLSVLNLS N L 
Sbjct: 899  LYGLNLSHNGFTGHIPSSIGNLRQLESLDLSQNRLSGEIPTQLANLNFLSVLNLSFNQLV 958

Query: 948  GNIPVSTQLQSFSPTSFEGNEGLCGAPLNVC----PPNSSKAL--PSAPASTDEIDWFFI 1001
            G IP   Q+Q+FS  S+EGN+ LCG PL++     PP+  K         S  EI W +I
Sbjct: 959  GRIPPGNQMQTFSEASYEGNKELCGWPLDLSCTDPPPSQGKEEFDDRHSGSRMEIKWEYI 1018

Query: 1002 VMAIGFAVGFGSVVAPLMFSRRVNKWYNNLINR 1034
               IGF  G G V+ PL+  RR  K Y   ++R
Sbjct: 1019 APEIGFVTGLGIVIWPLVLCRRWRKCYYKHVDR 1051

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139184|ref|XP_002323001.1| predicted protein [Populus trichocarpa] gi|222867631|gb|EEF04762.1| predicted protein [Populus trichocarpa]

 Score = 1106 bits (2861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/1037 (57%), Positives = 755/1037 (72%), Gaps = 12/1037 (1%)

Query: 6    LSWLFLIPLLTNFGGINTVLVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSTDCC 65
             +WLFLIP LT F G+N  LVSGQC+ DQQSLLLQ+K++LVF+ S+S ++V+W+ + DCC
Sbjct: 1    FTWLFLIPFLTIFFGVNVCLVSGQCRKDQQSLLLQLKNTLVFDQSVSAKLVKWNSTPDCC 60

Query: 66   TWCGVDCDE-AGRVIGLDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLG 124
             W G+ CDE +GRVI LDLS E I+G + +SS L  L++LQSLNL+FN F +T +P G  
Sbjct: 61   DWPGITCDEGSGRVISLDLSSERITGGLGDSSGLYRLQFLQSLNLSFNSF-STALPVGFA 119

Query: 125  NLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGP-LKLENPNLSGLLQNLA 183
            NLT+L  LNLSNAGF GQIP   S +T+LV+LDLS+    G P LKLE PN + L+QNL 
Sbjct: 120  NLTDLISLNLSNAGFTGQIPNDFSKLTKLVSLDLSALSFPGSPALKLEQPNFATLVQNLT 179

Query: 184  ELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLD 243
             L  L LDGVNISA G +WC+ALSS +P L+VLS+S+CYLSGP+  SLAKLQSLS+I L 
Sbjct: 180  HLTELLLDGVNISAHGNDWCKALSSSLPNLKVLSMSNCYLSGPLDASLAKLQSLSIIRLS 239

Query: 244  QNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDF 303
             N+LS+PVPEFLA++  LT+L LSS  LNG FP+ I QV TL+ LDL  N  L+GS P+F
Sbjct: 240  GNNLSTPVPEFLANYSKLTALQLSSCQLNGIFPQAIFQVPTLEILDLQYNKFLQGSFPEF 299

Query: 304  PKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLS 363
             +N SLRTL+LS  NFSG LP SIG L+ LSR++LA  N +G IP S+A LTQL YLDL 
Sbjct: 300  HQNLSLRTLLLSNTNFSGTLPQSIGELQKLSRIELAGNNFTGPIPNSMANLTQLFYLDLL 359

Query: 364  SNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSL 423
            SNKF G +PS   SKNLT++D+S+N L G I S  WE L +L YVDL  NA NGSIP SL
Sbjct: 360  SNKFTGTLPSFRKSKNLTYVDVSHNQLKGEIPSGHWEGLRSLTYVDLGYNAFNGSIPSSL 419

Query: 424  FSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILML 483
            F+IP LQ++ L+NN+FGG IPEF N S S LDTLDLS+N+LEGPIP S+F L  L +L L
Sbjct: 420  FAIPSLQKIQLSNNRFGGQIPEFPNVSSSLLDTLDLSSNKLEGPIPSSVFGLAKLNVLEL 479

Query: 484  SSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPS---QVRTLRLASCKLKVI 540
            SSN LN T+QL  IQ+L NL  L LSYNNLTV +SG +S  S   Q++ LRLASC L + 
Sbjct: 480  SSNMLNDTLQLHWIQKLPNLTTLGLSYNNLTVKSSGGNSNMSSLPQIKKLRLASCDLGMF 539

Query: 541  PNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLM 600
            P+L++QSKLF+LDLSDNQI+G +P W+ E+    L+YLNLS NLL  L+RP S+  L   
Sbjct: 540  PDLRNQSKLFHLDLSDNQITGPVPGWISELI--LLQYLNLSRNLLVDLERPLSLPGL--- 594

Query: 601  TVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVI 660
            ++LDLH NQLQG+IP PP     VDYS+N F+S IP +IGN  NFT+FFSLS+N +TG I
Sbjct: 595  SILDLHHNQLQGSIPVPPSYITYVDYSSNKFSSFIPPNIGNYFNFTLFFSLSNNHLTGEI 654

Query: 661  PETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQ 720
            P++IC  ++L VLDLSNN LSG +P+CLI     L VLNLR N+  G +   FP +C L+
Sbjct: 655  PQSICNTEWLQVLDLSNNSLSGAIPSCLIDKIKTLRVLNLRRNNFDGIIPDKFPRSCELK 714

Query: 721  TLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGS 780
            TLDL+ N L G VPKSLANC  LEVLDLGNN+I D+FPC LK+ISS RVLVLR+N F G 
Sbjct: 715  TLDLSGNNLQGQVPKSLANCTMLEVLDLGNNQINDSFPCLLKSISSFRVLVLRNNMFSGH 774

Query: 781  ITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDI 840
            I C + + +WP LQIVD+A N+F G +   C+ +W+ MM   + +  + +    +L   +
Sbjct: 775  IGCPQIEGTWPRLQIVDLAFNHFIGNLSDICLKTWEGMMEGGNRSLDHIRYDPLQLTNGL 834

Query: 841  FYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGG 900
            +YQD +TVT KG E+ELVKIL++FTS DFS NNF+GPIP+ IG+  +LY LN S N   G
Sbjct: 835  YYQDSITVTVKGLELELVKILTVFTSADFSSNNFEGPIPDAIGKFNALYVLNLSHNVLTG 894

Query: 901  PIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFS 960
             IPS++GNL QLESLDLS N LS QIP QL +LTFLSVLNLS+N L G IP   Q  +FS
Sbjct: 895  QIPSSLGNLSQLESLDLSSNQLSGQIPAQLTSLTFLSVLNLSYNRLVGRIPTGNQFLTFS 954

Query: 961  PTSFEGNEGLCGAPLNVCPPNSSKALPSAPAST-DEIDWFFIVMAIGFAVGFGSVVAPLM 1019
              SFEGN+GLCG PL +   N++++  +  ++   E DW FIV  +GF +G G VVAPL+
Sbjct: 955  SDSFEGNQGLCGPPLKLACSNTNESNSTRGSNQRKEFDWQFIVPGLGFGLGSGIVVAPLL 1014

Query: 1020 FSRRVNKWYNNLINRFI 1036
            FS+++NK Y++ I++ +
Sbjct: 1015 FSKKINKCYDDRIDKIL 1031

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481300|ref|XP_002269481.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score = 1105 bits (2858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 605/1020 (59%), Positives = 743/1020 (72%), Gaps = 22/1020 (2%)

Query: 26   VSGQCQSDQQSLL-------LQMKSSLVFNSSLSFRMVQWSQSTDCCTWCGVDCDEAGRV 78
            VSG+C SD +  L       LQ+KSSL+FN++ S ++V W QS DCC+W GV  D  GRV
Sbjct: 6    VSGECLSDGRVCLEDEVLLLLQLKSSLIFNTAASNKLVSWIQSADCCSWGGVTWDATGRV 65

Query: 79   IGLDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAG 138
            + LDLS E ISG +++SS + SL+YLQSLNLA N F +++IP+    L NLT+LNLSNAG
Sbjct: 66   VSLDLSSEFISGELNSSSSIFSLQYLQSLNLANNTF-SSQIPAEFHKLGNLTYLNLSNAG 124

Query: 139  FAGQIPIQVSAMTRLVTLDLSSSYSFGG--PLKLENPNLSGLLQNLAELRALYLDGVNIS 196
            F+GQIPI++S +T+LVT+DLSS Y   G   LKLENPNL  L+QNL +LR L+LDGV IS
Sbjct: 125  FSGQIPIEISYLTKLVTIDLSSLYFITGIPKLKLENPNLRMLVQNLKKLRELHLDGVIIS 184

Query: 197  APGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLA 256
            A G EWC ALSS VP L+VLSL SC+LSGPIH SL KLQSLS I LD N++++PVPEFL+
Sbjct: 185  AQGKEWCWALSSSVPNLQVLSLYSCHLSGPIHYSLKKLQSLSRIRLDDNNIAAPVPEFLS 244

Query: 257  DFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSY 316
            +F NLT L LSS GL GTFPE I QV TLQTLDLS N LL+GSLP+FP+   L TL+LS 
Sbjct: 245  NFSNLTHLQLSSCGLYGTFPEKIFQVPTLQTLDLSYNKLLQGSLPEFPQGGCLETLVLSV 304

Query: 317  ANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHM 376
              FSG LP+SI NLK L+R++LA C+ SG IPT +A LTQLVYLD S NKF G IPS  +
Sbjct: 305  TKFSGKLPNSIANLKRLARIELADCDFSGPIPTVMANLTQLVYLDFSHNKFSGAIPSFSL 364

Query: 377  SKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLAN 436
            SKNLT +DLS+N L G ISS+ W    NLV +D   N+L GS+P  LFS+P LQ++ L N
Sbjct: 365  SKNLTLIDLSHNNLTGQISSSHWVGFVNLVTIDFCYNSLYGSLPMPLFSLPSLQKIKLNN 424

Query: 437  NKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAA 496
            N+F GP  EF   S   +DTLDLS N LEGPIP+S+F+L++L IL LSSNK NGTV+L+ 
Sbjct: 425  NQFSGPFGEFPATSSHPMDTLDLSGNNLEGPIPVSLFDLQHLNILDLSSNKFNGTVELSQ 484

Query: 497  IQRLRNLIRLELSYNNLTVNASGD---SSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLD 553
             Q+L NL  L LSYNNL++N S     S     + TL+LASCKL+ +P+L SQS L  LD
Sbjct: 485  FQKLGNLTTLSLSYNNLSINPSRSNPTSPLLPILSTLKLASCKLRTLPDLSSQSMLVILD 544

Query: 554  LSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDL-NLMTVLDLHSNQLQG 612
            LS NQI G+IPNW+W+IGNG L +LNLSHNLL  LQ P  +S+L   ++ LDLHSNQL+G
Sbjct: 545  LSQNQIPGKIPNWIWKIGNGFLSHLNLSHNLLEGLQEP--LSNLPPFLSTLDLHSNQLRG 602

Query: 613  NIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLV 672
             IP PP ++  VDYSNN FTSSIP DIG  MN T+FFSLS N+ITG+IP +IC A YL V
Sbjct: 603  PIPTPP-SSTYVDYSNNRFTSSIPDDIGTYMNVTVFFSLSKNNITGIIPASICNAHYLQV 661

Query: 673  LDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGT 732
            LD S+N LSGK+P+CLI+  D L VLNLR N   GT+   FPG+C LQTLDLN N L G 
Sbjct: 662  LDFSDNSLSGKIPSCLIENGD-LAVLNLRRNKFKGTIPGEFPGHCLLQTLDLNGNLLEGK 720

Query: 733  VPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPM 792
            +P+SLANC+ LEVL+LGNN++ D FPCWLKNISSLRVLVLR+N F+G I C  ++ +WPM
Sbjct: 721  IPESLANCKALEVLNLGNNRMNDIFPCWLKNISSLRVLVLRANKFHGPIGCPNSNSTWPM 780

Query: 793  LQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELL--TDIFYQDVVTVTW 850
            LQIVD+A NNF G +P+KC ++W+AMM+ ED+ QS    + F++L  + ++YQD VTVT 
Sbjct: 781  LQIVDLAWNNFSGVLPEKCFSNWRAMMAGEDDVQSKSNHLRFKVLAFSQLYYQDAVTVTS 840

Query: 851  KGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQ 910
            KG+EMELVK+L++FTSIDFS NNF G IPE IG LK LY LN S N F G IPS++G L+
Sbjct: 841  KGQEMELVKVLTLFTSIDFSCNNFQGDIPEDIGDLKLLYVLNLSGNGFTGQIPSSLGQLR 900

Query: 911  QLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGL 970
            QLESLDLS+N LS +IP QL++L FLSVLNLS N L G IP   QLQ+FS  SF GN GL
Sbjct: 901  QLESLDLSLNKLSGEIPAQLSSLNFLSVLNLSFNGLVGRIPTGNQLQTFSENSFAGNRGL 960

Query: 971  CGAPLNVCPPNSSKALPSAPASTDE--IDWFFIVMAIGFAVGFGSVVAPLMFSRRVNKWY 1028
            CG PLNV   +++        S     I W +I   IGF  G G V+ PL+  RR  K Y
Sbjct: 961  CGFPLNVSCEDATPPTFDGRHSGSRIAIKWDYIAPEIGFVTGLGIVIWPLVLCRRWRKCY 1020

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147806063|emb|CAN76702.1| hypothetical protein VITISV_032508 [Vitis vinifera]

 Score = 1097 bits (2837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/1012 (58%), Positives = 739/1012 (73%), Gaps = 16/1012 (1%)

Query: 36   SLLLQMKSSLVFNSSLSFRMVQWSQSTDCCTWCGVDCDEAGRVIGLDLSEESISGRIDNS 95
            SLLLQ+KS+L  N + S ++V W+ S DCC+W GV  D +G V+ LDLS E ISG  ++S
Sbjct: 2    SLLLQLKSTLKHNVAASSKLVSWNPSGDCCSWGGVTWDSSGHVVELDLSSELISGGFNSS 61

Query: 96   SPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVT 155
            S L SL++LQ LNLA N FNA++IPSG G L NL +LNLS+AGF+GQIPI++S +TRLVT
Sbjct: 62   SSLFSLQHLQRLNLANNSFNASQIPSGFGKLGNLIYLNLSSAGFSGQIPIEISRLTRLVT 121

Query: 156  LDLSSSYSFGGP-LKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLR 214
            +D S  Y  G P LKLENPNL  LLQNL ELR L+L+GVNISA G EWCQ LSS VP L+
Sbjct: 122  IDFSILYFLGLPTLKLENPNLRKLLQNLRELRELHLNGVNISAEGKEWCQXLSSSVPNLQ 181

Query: 215  VLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGT 274
            VLS+ +CYLSGP+  SL KL+SLS I LD N  S+PVPEFLA+F NLT L LSS GL+GT
Sbjct: 182  VLSMPNCYLSGPLDSSLQKLRSLSSIRLDNNXFSAPVPEFLANFLNLTLLRLSSCGLHGT 241

Query: 275  FPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLS 334
            FPE I QV TLQ LDLS B LL+GSLP FP+N SL TL+LS   FSG +P SIGNLK L+
Sbjct: 242  FPEKIFQVPTLQXLDLSNBKLLQGSLPKFPQNGSLGTLVLSDTKFSGKVPYSIGNLKXLT 301

Query: 335  RLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAI 394
            R++LA C+ SG IP S+A LTQLVYLDLS+NKF G IP   +SKNLT ++LS+N L G I
Sbjct: 302  RIELAGCDFSGPIPNSMADLTQLVYLDLSNNKFSGSIPPFSLSKNLTRINLSHNYLTGPI 361

Query: 395  SSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSAL 454
            SS+ W+ L NLV +DLR+N+LNGS+P  LFS+P LQ++ L+NNKF GP+ +FS   +S L
Sbjct: 362  SSSHWDGLVNLVTLDLRDNSLNGSLPMLLFSLPSLQKIQLSNNKFSGPLSKFSVVPFSVL 421

Query: 455  DTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLT 514
            +TLD S+N LEGPIP+S+F+L  L IL LSSNK NGTV+L++ Q+L NL  L LSYN L+
Sbjct: 422  ETLDSSSNNLEGPIPVSVFDLHCLNILDLSSNKFNGTVELSSFQKLGNLSTLSLSYNFLS 481

Query: 515  VNAS-GDSSFP--SQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIG 571
             NAS G+ + P  S + TL+LASCKL  +P+L +QS+L +LDLSDNQI G IPNW+W+IG
Sbjct: 482  TNASVGNPTSPLLSNLTTLKLASCKLXTLPDLSTQSRLTHLDLSDNQIRGSIPNWIWKIG 541

Query: 572  NGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSF 631
            NG L +LNLSHNLL  LQ  +S +    +++LDLHSNQL G IP PP+ +  VDYSNNSF
Sbjct: 542  NGSLMHLNLSHNLLEDLQETFS-NFTPYLSILDLHSNQLHGQIPTPPQFSKYVDYSNNSF 600

Query: 632  TSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKM 691
             SSIP DIG  M+FTIFFSL  N+ITG IP +IC A YL VLD S+N  SG++P+CLI+ 
Sbjct: 601  NSSIPDDIGTYMSFTIFFSLXKNNITGSIPRSICNATYLQVLDFSDNAFSGEIPSCLIQ- 659

Query: 692  SDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNN 751
            ++ L VLNL  N   GT+       C L+TLDL+EN L G +P+SL NC++LE+L+LGNN
Sbjct: 660  NEALAVLNLGRNKFVGTIXGELXHKCLLRTLDLSENLLQGNIPESLVNCKELEILNLGNN 719

Query: 752  KIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKC 811
            +I D FPCWLKNISSLRVLVLR+N F+G+I C +++ +W  LQI D+A NNF G++P KC
Sbjct: 720  QIDDIFPCWLKNISSLRVLVLRANKFHGTIGCPKSNSTWATLQIFDLAFNNFSGKLPAKC 779

Query: 812  ITSWKAMMSDEDEAQSNFKDVHFEL--LTDIFYQDVVTVTWKGREMELVKILSIFTSIDF 869
            +++W A+M+ E+E QS  K + F +     ++YQD V V  KG+EMELVKIL++FTSID+
Sbjct: 780  LSTWTAIMAGENEVQSKLKILQFRVPQFGQLYYQDTVRVISKGQEMELVKILTLFTSIDW 839

Query: 870  SRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQ 929
            S NNF+G IPE IG L SLY LN S N F G IPS+IG L+QLESLDLS N LS +IP Q
Sbjct: 840  SYNNFEGEIPEVIGNLTSLYVLNLSHNGFTGQIPSSIGKLRQLESLDLSQNRLSGEIPTQ 899

Query: 930  LANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAPLNV-----CPPNSSK 984
            LANL FLSVLNLS N L G IP   QLQ+FSP SF GN GLCG P+NV      PP S  
Sbjct: 900  LANLNFLSVLNLSFNQLVGRIPPGNQLQTFSPNSFVGNRGLCGFPVNVSCEDATPPTSDD 959

Query: 985  ALPSAPASTDEIDWFFIVMAIGFAVGFGSVVAPLMFSRRVNKWYNNLINRFI 1036
                   S  EI W  I   IGF  G G V+ PL+  RR  K Y   ++R +
Sbjct: 960  G---HSGSGMEIKWECIAPEIGFVTGLGIVIWPLVLCRRWRKCYYKHVDRIL 1008

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|214011438|gb|ACJ61469.1| GbVe [Gossypium barbadense]

 Score = 1093 bits (2828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 596/1047 (56%), Positives = 746/1047 (71%), Gaps = 20/1047 (1%)

Query: 1    MSVLQLSWLFLIP-LLTNFGGINTVLVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQWS 59
            M +   SW+F    L+  F  I+ VLVSGQCQ DQ  LLL++KSS  FNS+   ++ +W+
Sbjct: 1    MMISPFSWIFFNAFLVAAFFTIHLVLVSGQCQRDQGQLLLELKSS--FNSTSLGKLQKWN 58

Query: 60   QSTDCCTWCGVDCDEAGRVIGLDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEI 119
            Q+TDCC W GV CD +GRVIGLDLS +SISG ID+SS L   ++LQ LNLA+N   AT  
Sbjct: 59   QTTDCCFWDGVTCDASGRVIGLDLSNQSISGAIDDSSGLFRFQHLQQLNLAYNRLMAT-F 117

Query: 120  PSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLL 179
            P+G   L NL++LNLSNAGF GQIP  +S MTRLVTLDLS S   G  L LE P L  L+
Sbjct: 118  PTGFDKLENLSYLNLSNAGFTGQIPAVISRMTRLVTLDLSVSSLLGRSLTLEKPKLEMLV 177

Query: 180  QNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSV 239
            QNL +L+ L+LDGVNI A G EWC+ALSSL   L+VLS+S+C LSGPI  S++KL+SLSV
Sbjct: 178  QNLTKLKFLHLDGVNIRATGNEWCRALSSLT-DLQVLSMSNCNLSGPIDSSISKLRSLSV 236

Query: 240  ICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGS 299
            I LD N+LS+ VPEF A+F NLTSL+LS+SGL G  P  +L++ TLQ LDLS N LL GS
Sbjct: 237  IRLDNNNLSTSVPEFFAEFPNLTSLHLSTSGLRGGLPAEVLKIPTLQILDLSNNELLEGS 296

Query: 300  LPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVY 359
              +FP N SL+TL LS   F G +PDSIGNL  L+R++LA CN SG IP ++ KLTQLVY
Sbjct: 297  FQEFPSNGSLQTLTLSGTKFGGQVPDSIGNLGQLTRIELASCNFSGPIPKAVKKLTQLVY 356

Query: 360  LDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSI 419
            LD SSN F GPIPS   S+NLT L+L+ N L G I STDW  LSNLV +DLRNN L+G+I
Sbjct: 357  LDFSSNSFSGPIPSFSSSRNLTQLNLAYNRLNGTIHSTDWSVLSNLVSIDLRNNKLSGTI 416

Query: 420  PRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLK 479
            P +LF IP LQ++ L+ N+F G + +    +   LDTLDLS+N L+G  PM +FEL+ LK
Sbjct: 417  PPTLFGIPSLQKISLSQNRFNGSLGDLRGKTTLLLDTLDLSSNMLQGQFPMFVFELQGLK 476

Query: 480  ILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNA----SGDSSFPSQVRTLRLASC 535
            IL +SSNK +G +Q   IQ+LRNL  L+LSYNNL+++A    S  S+FP+ + TL+LASC
Sbjct: 477  ILTISSNKFSGFIQWTDIQKLRNLSNLDLSYNNLSIDATSTNSALSTFPN-ITTLKLASC 535

Query: 536  KLKVIPN-LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSI 594
             LK  P  LK+Q KL +LDLS NQ+SGEIPNWVWEI N  L YLNLS N L   + P+ +
Sbjct: 536  NLKKFPGFLKTQVKLNHLDLSKNQMSGEIPNWVWEIKN--LAYLNLSQNSLMKFEGPF-L 592

Query: 595  SDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSN 654
            S  + +TV+DLH NQLQG I   P+ A  +DYS N+F+S +P DIG+ + F  FFS+S N
Sbjct: 593  SITSTLTVVDLHGNQLQGQIDRLPQYATYLDYSRNNFSSVLPRDIGDFLQFAYFFSISDN 652

Query: 655  SITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFP 714
            +  G IPE+IC++ YL VLDLSNN LSG +P CLI+MS  LGVLNLR N+L+G +S TFP
Sbjct: 653  NFHGSIPESICKSSYLQVLDLSNNSLSGSIPECLIQMSVSLGVLNLRRNNLTGNISDTFP 712

Query: 715  GNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRS 774
             NC LQTL LN N L G VPKSL +C+ LEVLDLGNN+I DTFPC LKNISSLRVLVLR 
Sbjct: 713  ENCLLQTLVLNRNLLRGKVPKSLVSCKMLEVLDLGNNQINDTFPCHLKNISSLRVLVLRG 772

Query: 775  NSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHF 834
            N F G++ C E    WPMLQIVD++SN+F GR+ + C+++WKAM + E E  S    + F
Sbjct: 773  NKFNGNVHCSER-SPWPMLQIVDLSSNSFSGRLHEACLSTWKAMRAAESETLSELNHLQF 831

Query: 835  ELLT--DIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLN 892
            ++L     +YQD +TVT KG E+EL+KIL++FTSID SRNNF+GPIPE IG  K+LY LN
Sbjct: 832  KVLKLNQFYYQDAITVTMKGLELELLKILTVFTSIDISRNNFEGPIPEVIGTFKALYVLN 891

Query: 893  FSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPV 952
            FS NAF G IP ++GNL QLESLDLS N    +IPIQLANL F+S LN+S+N LEG IP 
Sbjct: 892  FSHNAFTGSIPPSLGNLSQLESLDLSSNSFDGEIPIQLANLNFISFLNVSNNKLEGQIPR 951

Query: 953  STQLQSFSPTSFEGNEGLCGAPLNVCPPNSSKALPSAPAS---TDEIDWFFIVMAIGFAV 1009
            STQ+QSFS  SFE N+GLCG PL     N +   P         DE DW FI + +GF V
Sbjct: 952  STQIQSFSEASFENNKGLCGLPLTTDCVNGTSPKPRTTQEFQPADEFDWQFIFIGVGFGV 1011

Query: 1010 GFGSVVAPLMFSRRVNKWYNNLINRFI 1036
            G    VAPL+F +  +KW + ++++ +
Sbjct: 1012 GAALFVAPLIFWKTASKWVDEIVDKIL 1038

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481293|ref|XP_003632602.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score = 1085 bits (2806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 605/1033 (58%), Positives = 749/1033 (72%), Gaps = 20/1033 (1%)

Query: 21   INTVLVSGQCQ-------SDQQSLLLQMKSSLVFNSSLSFRMVQWSQSTDCCTWCGVDCD 73
            I+  LVSG+C         D++S+LLQ+K+SL F S++S ++V W++S  CC+W GV  D
Sbjct: 73   IHIALVSGECLGGSRLCLEDEKSMLLQLKNSLKFKSNVSMKLVTWNESVGCCSWEGVTWD 132

Query: 74   EAGRVIGLDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLN 133
              G V+GLDLS E ISG  ++SS L SL++LQ LNLA N FN+++IPSG   L NLT+LN
Sbjct: 133  SNGHVVGLDLSSELISGGFNSSSSLFSLRHLQRLNLANNSFNSSQIPSGFDKLGNLTYLN 192

Query: 134  LSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGP-LKLENPNLSGLLQNLAELRALYLDG 192
            LS  GF GQIPI++S +TRLVT+D S  Y  G P LKLENPNL  L+QNLAELR LYL+G
Sbjct: 193  LSATGFYGQIPIEISRLTRLVTIDFSILYFPGVPTLKLENPNLRMLVQNLAELRELYLNG 252

Query: 193  VNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVP 252
            VNISA G EWC+ALSS VP L+VLSL SCYLSGP+  SL KL+SLS I LD N+ S+PVP
Sbjct: 253  VNISAQGKEWCRALSSSVPNLQVLSLPSCYLSGPLDSSLQKLRSLSSIRLDSNNFSAPVP 312

Query: 253  EFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTL 312
            EFLA+F NLT L LSS GL GTFPE I QV TLQ LDLS N LL GSLP+FP+N SL TL
Sbjct: 313  EFLANFSNLTQLRLSSCGLYGTFPEKIFQVPTLQILDLSNNKLLLGSLPEFPQNGSLETL 372

Query: 313  MLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIP 372
            +L    FSG +P+SIGNLK L+R++LARCN SG IP S A L +LVYLDLS NKF GPIP
Sbjct: 373  VLPDTKFSGKVPNSIGNLKRLTRIELARCNFSGPIPNSTANLARLVYLDLSENKFSGPIP 432

Query: 373  SLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQL 432
               +SKNLT ++LS+N L G I S+  + L NLV +DL  N+LNGS+P  LFS+P LQ++
Sbjct: 433  PFSLSKNLTRINLSHNHLTGPIPSSHLDGLVNLVTLDLSKNSLNGSLPMPLFSLPSLQKI 492

Query: 433  LLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTV 492
             L+NN+F GP+ +FS    S LDTLDLS+N LEG IP+SIF+L+ L IL LSSNK NGTV
Sbjct: 493  QLSNNQFSGPLSKFSVVP-SVLDTLDLSSNNLEGQIPVSIFDLQCLSILDLSSNKFNGTV 551

Query: 493  QLAAIQRLRNLIRLELSYNNLTVNAS---GDSSFPSQVRTLRLASCKLKVIPNLKSQSKL 549
             L++ Q+L NL  L LSYNNL++N+S           + TL+LASCKL+ +P+L +QS+L
Sbjct: 552  LLSSFQKLGNLTTLSLSYNNLSINSSVGNPTLPLLLNLTTLKLASCKLRTLPDLSTQSRL 611

Query: 550  FNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQ 609
              LDLSDNQI G IPNW+ +IGNG L +LNLSHNLL  LQ  +S    +L ++LDLHSNQ
Sbjct: 612  TYLDLSDNQIPGSIPNWIRKIGNGSLLHLNLSHNLLEDLQETFSNFTPSL-SILDLHSNQ 670

Query: 610  LQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKY 669
            L G IP PP+    VDYS+N FTSSIP  IG  ++FTIFFSLS N+ITG IP +IC A Y
Sbjct: 671  LHGQIPTPPQFCSYVDYSDNRFTSSIPDGIGVYISFTIFFSLSKNNITGSIPRSICNATY 730

Query: 670  LLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQL 729
            L VLD SNN LSGK+P+CLI+    LGVLNLR N+ SG +   FP NC LQTLDL+ N +
Sbjct: 731  LQVLDFSNNNLSGKIPSCLIEYG-TLGVLNLRRNNFSGAIPGKFPVNCLLQTLDLSRNHI 789

Query: 730  GGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDS 789
             G +P SLANC  LEVL+LGNN++  TFPC LKNI++LRVLVLR N+F GSI CR+++ +
Sbjct: 790  EGKIPGSLANCTALEVLNLGNNQMNGTFPCLLKNITTLRVLVLRGNNFQGSIGCRKSNST 849

Query: 790  WPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELL--TDIFYQDVVT 847
            W MLQIVD+A NNF G++P  C ++W AMM+ E+E QS  K + F +L  + ++YQD VT
Sbjct: 850  WAMLQIVDLAFNNFSGKLPATCFSTWTAMMAGENEVQSKLKHLQFRVLQFSQLYYQDAVT 909

Query: 848  VTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIG 907
            VT KG EMELVK+L+++TSID S NNF G IPE +G   SLY LN S N F G IPS+IG
Sbjct: 910  VTSKGLEMELVKVLTLYTSIDLSCNNFQGDIPEVMGNFTSLYVLNLSHNGFTGHIPSSIG 969

Query: 908  NLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGN 967
            NL+QLESLDLS N LS +IP QLANL FLSVLNLS N L G IP   Q+Q+FS TS+EGN
Sbjct: 970  NLRQLESLDLSRNRLSGEIPTQLANLNFLSVLNLSFNQLVGRIPPGNQMQTFSETSYEGN 1029

Query: 968  EGLCGAPLNVC---PPNSSKALPSAP-ASTDEIDWFFIVMAIGFAVGFGSVVAPLMFSRR 1023
            + LCG PL  C   PP   K          +E DW FI+  +GF VG G +VAPL+F ++
Sbjct: 1030 KELCGWPLINCTDPPPTQDKRFQDKRFQDKEEFDWEFIITGLGFGVGAGIIVAPLIFWKK 1089

Query: 1024 VNKWYNNLINRFI 1036
              KW +  ++RF+
Sbjct: 1090 GRKWLDECVDRFV 1102

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481304|ref|XP_002270356.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score = 1076 bits (2783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 587/1036 (56%), Positives = 742/1036 (71%), Gaps = 24/1036 (2%)

Query: 21   INTVLVSGQCQSDQQSLL-------LQMKSSLVFNSSLSFRMVQWSQSTDCCTWCGVDCD 73
            ++  LVSG+C SD +  L       LQ+KS+L FN+  S ++V W+QS DCC+W GV  D
Sbjct: 1    MHVALVSGECLSDGRVCLEDEMLLLLQLKSTLKFNADASNKLVSWNQSADCCSWGGVTWD 60

Query: 74   EAGRVIGLDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLN 133
              G V+ LDLS E IS    +SS + SL+YLQSLNLA N F ++EIPSG   L NLT+LN
Sbjct: 61   ATGHVVALDLSSEFISDGFYSSSSIFSLQYLQSLNLANNTFFSSEIPSGFDKLGNLTYLN 120

Query: 134  LSNAGFAGQIPIQVSAMTRLVTLDLSSSYS-FGGPL-KLENPNLSGLLQNLAELRALYLD 191
            LS AGF+GQIPI++S +TRLVT+D+SS    FG P  KLE PNL  L+QNL ELR L+LD
Sbjct: 121  LSKAGFSGQIPIEISRLTRLVTIDISSFNDLFGTPAPKLEQPNLRMLVQNLKELRELHLD 180

Query: 192  GVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPV 251
            GV+ISA G EWCQALSS VP LRVLSLS C+LSGPI  SL KL+SLSV+ L+ N+ ++PV
Sbjct: 181  GVDISAQGKEWCQALSSSVPNLRVLSLSRCFLSGPIDSSLVKLRSLSVVHLNYNNFTAPV 240

Query: 252  PEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRT 311
            P+FLA+F NLTSL+LS   L GTFPE I QV  LQ LDLS N LL G+LP+FP+  SLRT
Sbjct: 241  PDFLANFSNLTSLSLSFCRLYGTFPENIFQVPALQILDLSNNQLLWGALPEFPQGGSLRT 300

Query: 312  LMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPI 371
            L+LS   FSG +PDSIG L+ LS ++LARCN SG IP+S+A LT+L+YLDLSSN F G I
Sbjct: 301  LVLSDTKFSGHMPDSIGKLEMLSWIELARCNFSGPIPSSIANLTRLLYLDLSSNGFTGSI 360

Query: 372  PSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQ 431
            PS   SKNLTH++LS N   G I S  WE   NL+ +DL  N L+G +P SLFS P LQ+
Sbjct: 361  PSFRSSKNLTHINLSRNYFTGQIISHHWEGFLNLLNLDLHQNLLHGDLPLSLFSHPSLQK 420

Query: 432  LLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGT 491
            + L  N+F G + EFS  S   L+ LDLS+N L+G IP+S+F+L+ L++L LS N ++GT
Sbjct: 421  IQLNQNQFSGQLNEFSVVSSFVLEVLDLSSNNLQGSIPLSVFDLRALRVLELSFNNVSGT 480

Query: 492  VQLAAIQRLRNLIRLELSYNNLTVNA-SGDSSFPS--QVRTLRLASCKLKVIPNLKSQSK 548
            ++L+  Q L NL  L LS+N L++N  S +SSF       TL+LASC LK  P+L++ SK
Sbjct: 481  LELSKFQELGNLTTLSLSHNKLSINVDSFNSSFSKSPHFTTLKLASCNLKRFPDLRNNSK 540

Query: 549  LFN-LDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHS 607
                LDLS NQI GEIP+W+W IGN  L +LNLSHNLL  LQ P+      L T LDLHS
Sbjct: 541  FLGYLDLSQNQIQGEIPHWIWMIGNSFLVHLNLSHNLLVDLQEPFPNLPPYLFT-LDLHS 599

Query: 608  NQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRA 667
            N L+G IP PP+ +  VDYSNNSF SSIP DIG+ +++ IFFSLS N+I+G+IPE+IC A
Sbjct: 600  NLLRGRIPTPPQFSSYVDYSNNSFISSIPEDIGSYISYVIFFSLSKNNISGIIPESICNA 659

Query: 668  KYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNEN 727
              + VLDLS+N LSG++P+CLI+ ++ L VLNLR N  SGT+S  FPGNC L TLDLN N
Sbjct: 660  TNVQVLDLSDNALSGEIPSCLIE-NEALAVLNLRRNMFSGTISGNFPGNCILHTLDLNGN 718

Query: 728  QLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCREND 787
             L GT+P+S+ANC++LEVL+LGNN+I D FPCWLKN+SSLRVLVLR+N F+G I C  ++
Sbjct: 719  LLEGTIPESVANCKELEVLNLGNNRIDDKFPCWLKNMSSLRVLVLRANRFHGPIGCPNSN 778

Query: 788  DSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELL--TDIFYQDV 845
             +WPMLQIVD+A NNF G++P K   +WKAMM+ EDE QS    + F++L  ++++YQD 
Sbjct: 779  STWPMLQIVDLAYNNFSGKLPAKGFLTWKAMMASEDEVQSKLNHIQFKILEFSELYYQDA 838

Query: 846  VTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPST 905
            VTVT KG+EMELVK+L++FTSIDFS N F+G IPE++G   SLY LN S N F G IPS+
Sbjct: 839  VTVTSKGQEMELVKVLTLFTSIDFSSNKFEGQIPEEMGNFISLYVLNLSGNGFTGQIPSS 898

Query: 906  IGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFE 965
            +G L+QLESLDLS NHLS +IP +L +LTFLSVL+LS N L G IP   Q Q+FS  SF+
Sbjct: 899  MGQLRQLESLDLSRNHLSGKIPTELVSLTFLSVLDLSFNQLVGAIPSGNQFQTFSEASFQ 958

Query: 966  GNEGLCGAPLNV-----CPPNSSKALPSAPASTDEIDWFFIVMAIGFAVGFGSVVAPLMF 1020
             N+GLCG PLNV      PP +     S  AS  EI W +I   IGF  G G V+ PL+F
Sbjct: 959  VNKGLCGQPLNVNCEEDTPPPTFDDRHS--ASRMEIKWEYIAPEIGFVTGLGIVIWPLVF 1016

Query: 1021 SRRVNKWYNNLINRFI 1036
             RR  + Y   ++R +
Sbjct: 1017 CRRWRQCYYKRVDRIL 1032

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|237899605|gb|ACR33107.1| verticillium wilt disease resistance protein [Solanum lycopersicum]

 Score = 1060 bits (2742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/1049 (54%), Positives = 739/1049 (70%), Gaps = 12/1049 (1%)

Query: 1    MSVLQLSWLF-LIPLLTNFGGINTVLVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQWS 59
            M  L   W+F +IP L    G   +LVS QC  DQ+SLLLQ+K S  ++S+LS ++ +W+
Sbjct: 1    MRFLHFLWIFFIIPFLQILLGNEILLVSSQCLDDQKSLLLQLKGSFQYDSTLSNKLARWN 60

Query: 60   QST-DCCTWCGVDCDEAGRVIGLDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATE 118
             +T +CC W GV CD +G VI L+L +E IS  I+N+S L SL+YL+ LNLA+N FN   
Sbjct: 61   HNTSECCNWNGVTCDLSGHVIALELDDEKISSGIENASALFSLQYLERLNLAYNKFNVG- 119

Query: 119  IPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSY-SFGGPLKLENPNLSG 177
            IP G+GNLTNLT+LNLSNAGF GQIP+ +S +TRLVTLDLS+ +  F  PLKLENPNLS 
Sbjct: 120  IPVGIGNLTNLTYLNLSNAGFVGQIPMMLSRLTRLVTLDLSTLFPDFAQPLKLENPNLSH 179

Query: 178  LLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSL 237
             ++N  ELR LYLDGV++SA   EWCQ+LSS +P L VLSL +C +SGPI  SL+KL  L
Sbjct: 180  FIENSTELRELYLDGVDLSAQRTEWCQSLSSYLPNLTVLSLRTCRISGPIDESLSKLHFL 239

Query: 238  SVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLR 297
            S I LDQN+LS+ VPE+ A+F NLT+L LSS  L GTFP+ I QV  L+ LDLS N LL 
Sbjct: 240  SFIRLDQNNLSTTVPEYFANFSNLTTLTLSSCNLQGTFPKRIFQVPVLEFLDLSTNKLLS 299

Query: 298  GSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQL 357
            GS+P FP+  SLRT+ LSY  FSG LPD+I NL+NLSRL+L+ CN S  IP+++A LT L
Sbjct: 300  GSIPIFPQIGSLRTISLSYTKFSGSLPDTISNLQNLSRLELSNCNFSEPIPSTMANLTNL 359

Query: 358  VYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNG 417
            VYLD S N F G +P    +K L +LDLS N L G +S   +E LS LVY++L NN+LNG
Sbjct: 360  VYLDFSFNNFTGSLPYFQGAKKLIYLDLSRNGLTGLLSRAHFEGLSELVYINLGNNSLNG 419

Query: 418  SIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKN 477
            S+P  +F +P L+QL L +N+F G + EF NAS S LDT+DL  N L G IP S+FE+  
Sbjct: 420  SLPAYIFELPSLKQLFLYSNQFVGQVDEFRNASSSPLDTVDLRNNHLNGSIPKSMFEVGR 479

Query: 478  LKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPS---QVRTLRLAS 534
            LK+L LSSN   GTV L  I RL NL RLELSYNNLTV+AS  +S      Q+  L+LAS
Sbjct: 480  LKVLSLSSNFFRGTVPLDLIGRLSNLSRLELSYNNLTVDASSSNSTSFTFPQLNILKLAS 539

Query: 535  CKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSI 594
            C+L+  P+LK+QS++ +LDLSDNQI G IPNW+W IG GGL +LNLS N L  +++PY++
Sbjct: 540  CRLQKFPDLKNQSRMMHLDLSDNQILGAIPNWIWGIGGGGLAHLNLSFNQLEYVEQPYTV 599

Query: 595  SDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSN 654
            S  NL+ VLDLHSN+L+G++  PP  A+ VDYS+N+  +SIP DIG S+ F  FFS+++N
Sbjct: 600  SS-NLV-VLDLHSNRLKGDLLIPPSTAIYVDYSSNNLNNSIPTDIGRSLGFASFFSVANN 657

Query: 655  SITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFP 714
            SITG+IPE+IC   YL VLD SNN LSG +P CL++ S  LGVLNL  N L G +  +FP
Sbjct: 658  SITGIIPESICNVSYLQVLDFSNNALSGTIPPCLLEYSPKLGVLNLGNNRLHGVIPDSFP 717

Query: 715  GNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRS 774
              C L TLDL+ N   G +PKSL NC  LEVL++GNN + D FPC L+N +SL+VLVLRS
Sbjct: 718  IGCALITLDLSRNIFEGKLPKSLVNCTLLEVLNVGNNSLVDRFPCMLRNSTSLKVLVLRS 777

Query: 775  NSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHF 834
            N F G++TC     SW  LQI+DIASNNF G +  +C T+W+ MM  +D  ++    + +
Sbjct: 778  NKFNGNLTCNITKHSWKNLQIIDIASNNFTGMLNAECFTNWRGMMVAKDYVETGRNHIQY 837

Query: 835  EL--LTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLN 892
            E   L++++YQD VT+  KG E+ELVKIL +FTSIDFS N F G IP+ +G L SLY LN
Sbjct: 838  EFLQLSNLYYQDTVTLIIKGMELELVKILRVFTSIDFSSNRFQGKIPDTVGDLSSLYVLN 897

Query: 893  FSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPV 952
             S NA  GPIP +IG LQ LESLDLS NHLS +IP +L++LTFL+VLNLS NNL G IP 
Sbjct: 898  LSHNALEGPIPKSIGKLQMLESLDLSRNHLSGEIPSELSSLTFLAVLNLSFNNLFGKIPQ 957

Query: 953  STQLQSFSPTSFEGNEGLCGAPLNV-CPPNSSKALPSAPASTDEIDWFFIVMAIGFAVGF 1011
            S Q ++FS  SFEGN GLCG PLNV C  ++S+  P+  +  D  DW FI   +G+ VG 
Sbjct: 958  SNQFETFSAESFEGNRGLCGLPLNVICKSDTSELKPAPSSQDDSYDWQFIFTGVGYGVGA 1017

Query: 1012 GSVVAPLMFSRRVNKWYNNLINRFINCRF 1040
               +APL+F ++ NK+++  + R +   F
Sbjct: 1018 AISIAPLLFYKQGNKYFDKHLERMLKLMF 1046

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535939|ref|NP_001234733.1| verticillium wilt disease resistance protein Ve2 precursor [Solanum lycopersicum] gi|14269077|gb|AAK58011.1|AF365929_1 verticillium wilt disease resistance protein Ve2 [Solanum lycopersicum] gi|14269079|gb|AAK58012.1|AF365930_1 verticillium wilt disease resistance protein Ve2 [Solanum lycopersicum]

 Score = 1060 bits (2741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/1049 (54%), Positives = 739/1049 (70%), Gaps = 12/1049 (1%)

Query: 1    MSVLQLSWLF-LIPLLTNFGGINTVLVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQWS 59
            M  L   W+F +IP L    G   +LVS QC  DQ+SLLLQ+K S  ++S+LS ++ +W+
Sbjct: 1    MRFLHFLWIFFIIPFLQILLGNEILLVSSQCLDDQKSLLLQLKGSFQYDSTLSNKLARWN 60

Query: 60   QST-DCCTWCGVDCDEAGRVIGLDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATE 118
             +T +CC W GV CD +G VI L+L +E IS  I+N+S L SL+YL+ LNLA+N FN   
Sbjct: 61   HNTSECCNWNGVTCDLSGHVIALELDDEKISSGIENASALFSLQYLERLNLAYNKFNVG- 119

Query: 119  IPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSY-SFGGPLKLENPNLSG 177
            IP G+GNLTNLT+LNLSNAGF GQIP+ +S +TRLVTLDLS+ +  F  PLKLENPNLS 
Sbjct: 120  IPVGIGNLTNLTYLNLSNAGFVGQIPMMLSRLTRLVTLDLSTLFPDFAQPLKLENPNLSH 179

Query: 178  LLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSL 237
             ++N  ELR LYLDGV++SA   EWCQ+LSS +P L VLSL +C +SGPI  SL+KL  L
Sbjct: 180  FIENSTELRELYLDGVDLSAQRTEWCQSLSSYLPNLTVLSLRTCRISGPIDESLSKLHFL 239

Query: 238  SVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLR 297
            S I LDQN+LS+ VPE+ A+F NLT+L LSS  L GTFP+ I QV  L+ LDLS N LL 
Sbjct: 240  SFIRLDQNNLSTTVPEYFANFSNLTTLTLSSCNLQGTFPKRIFQVPVLEFLDLSTNKLLS 299

Query: 298  GSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQL 357
            GS+P FP+  SLRT+ LSY  FSG LPD+I NL+NLSRL+L+ CN S  IP+++A LT L
Sbjct: 300  GSIPIFPQIGSLRTISLSYTKFSGSLPDTISNLQNLSRLELSNCNFSEPIPSTMANLTNL 359

Query: 358  VYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNG 417
            VYLD S N F G +P    +K L +LDLS N L G +S   +E LS LVY++L NN+LNG
Sbjct: 360  VYLDFSFNNFTGSLPYFQGAKKLIYLDLSRNGLTGLLSRAHFEGLSELVYINLGNNSLNG 419

Query: 418  SIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKN 477
            S+P  +F +P L+QL L +N+F G + EF NAS S LDT+DL  N L G IP S+FE+  
Sbjct: 420  SLPAYIFELPSLKQLFLYSNQFVGQVDEFRNASSSPLDTVDLRNNHLNGSIPKSMFEVGR 479

Query: 478  LKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPS---QVRTLRLAS 534
            LK+L LSSN   GTV L  I RL NL RLELSYNNLTV+AS  +S      Q+  L+LAS
Sbjct: 480  LKVLSLSSNFFRGTVPLDLIGRLSNLSRLELSYNNLTVDASSSNSTSFTFPQLNILKLAS 539

Query: 535  CKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSI 594
            C+L+  P+LK+QS++ +LDLSDNQI G IPNW+W IG GGL +LNLS N L  +++PY++
Sbjct: 540  CRLQKFPDLKNQSRMMHLDLSDNQILGAIPNWIWGIGGGGLAHLNLSFNQLEYVEQPYTV 599

Query: 595  SDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSN 654
            S  NL+ VLDLHSN+L+G++  PP  A+ VDYS+N+  +SIP DIG S+ F  FFS+++N
Sbjct: 600  SS-NLV-VLDLHSNRLKGDLLIPPSTAIYVDYSSNNLNNSIPTDIGRSLGFASFFSVANN 657

Query: 655  SITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFP 714
            SITG+IPE+IC   YL VLD SNN LSG +P CL++ S  LGVLNL  N L G +  +FP
Sbjct: 658  SITGIIPESICNVSYLQVLDFSNNALSGTIPPCLLEYSPKLGVLNLGNNRLHGVIPDSFP 717

Query: 715  GNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRS 774
              C L TLDL+ N   G +PKSL NC  LEVL++GNN + D FPC L+N +SL+VLVLRS
Sbjct: 718  IGCALITLDLSRNIFEGKLPKSLVNCTLLEVLNVGNNSLVDRFPCMLRNSTSLKVLVLRS 777

Query: 775  NSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHF 834
            N F G++TC     SW  LQI+DIASNNF G +  +C T+W+ MM  +D  ++    + +
Sbjct: 778  NKFNGNLTCNITKHSWKNLQIIDIASNNFTGMLNAECFTNWRGMMVAKDYVETGRNHIQY 837

Query: 835  EL--LTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLN 892
            E   L++++YQD VT+  KG E+ELVKIL +FTSIDFS N F G IP+ +G L SLY LN
Sbjct: 838  EFLQLSNLYYQDTVTLIIKGMELELVKILRVFTSIDFSSNRFQGKIPDTVGDLSSLYVLN 897

Query: 893  FSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPV 952
             S NA  GPIP +IG LQ LESLDLS NHLS +IP +L++LTFL+VLNLS NNL G IP 
Sbjct: 898  LSHNALEGPIPKSIGKLQMLESLDLSRNHLSGEIPSELSSLTFLAVLNLSFNNLFGKIPQ 957

Query: 953  STQLQSFSPTSFEGNEGLCGAPLNV-CPPNSSKALPSAPASTDEIDWFFIVMAIGFAVGF 1011
            S Q ++FS  SFEGN GLCG PLNV C  ++S+  P+  +  D  DW FI   +G+ VG 
Sbjct: 958  SNQFETFSAESFEGNRGLCGLPLNVICKSDTSELKPAPSSQDDSYDWQFIFTGVGYGVGA 1017

Query: 1012 GSVVAPLMFSRRVNKWYNNLINRFINCRF 1040
               +APL+F ++ NK+++  + R +   F
Sbjct: 1018 AISIAPLLFYKQGNKYFDKHLERMLKLMF 1046

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1042
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.767	0.848	0.351	5.3e-104
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.705	0.84	0.357	1.1e-103
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.812	0.861	0.349	4.7e-103
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.770	0.839	0.328	3.2e-97
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.766	0.893	0.346	2.9e-96
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.670	0.805	0.341	1.8e-94
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.815	0.855	0.327	1.8e-94
TAIR|locus:2096339	786	RLP30 "receptor like protein 3	0.639	0.847	0.344	8e-91
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.708	0.871	0.340	9.3e-91
TAIR|locus:2094603	835	RLP37 "receptor like protein 3	0.673	0.840	0.348	1.2e-90

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
 Identities = 298/848 (35%), Positives = 436/848 (51%)

Query:   216 LSLSSCYLSGPIHP--SLAKLQSLSVICLDQNDLSSPVPEFLADXXXXXXXXXXXXXXXX 273
             L LS  +L G  H   SL +LQ+L V+ L QNDL   +P  + +                
Sbjct:   104 LDLSCSWLYGSFHSNSSLFRLQNLRVLDLTQNDLDGEIPSSIGNLSHLTSLHLSYNQFLG 163

Query:   274 XXPETILQVHTLQTLDLSGNSLLRGSLPDFPKN-SSLRTLMLSYANFSGVLPDSIGNLKN 332
               P +I  +  L +L LS N    G +P    N S L +L LS   FSG +P SIGNL N
Sbjct:   164 LIPSSIENLSRLTSLHLSSNQF-SGQIPSSIGNLSHLTSLELSSNQFSGQIPSSIGNLSN 222

Query:   333 LSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKN-LTHLDLSNNALP 391
             L+ L L   +  G IP+S+  L +L YL LS N FVG IPS   + N L  L + +N L 
Sbjct:   223 LTFLSLPSNDFFGQIPSSIGNLARLTYLYLSYNNFVGEIPSSFGNLNQLIVLQVDSNKLS 282

Query:   392 G--AISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNA 449
             G   IS  +   LS L+   L +N   G+IP ++  +  L     +NN F G +P  S  
Sbjct:   283 GNVPISLLNLTRLSALL---LSHNQFTGTIPNNISLLSNLMDFEASNNAFTGTLPS-SLF 338

Query:   450 SYSALDTLDLSANRLEGPIPM-SIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLEL 508
             +   L  LDLS N+L G +   +I    NL+ L++ SN   GT+   ++ R  NL   +L
Sbjct:   339 NIPPLIRLDLSDNQLNGTLHFGNISSPSNLQYLIIGSNNFIGTIP-RSLSRFVNLTLFDL 397

Query:   509 SYNNLTVNASGDSSFPSQVRTL---RLASCKLKVIP-N--LKSQSKLFNLDLSDNQISGE 562
             S+ N T     D S  S +++L   RL+      I  N  L     L +LD+S N +S  
Sbjct:   398 SHLN-TQCRPVDFSIFSHLKSLDDLRLSYLTTTTIDLNDILPYFKTLRSLDISGNLVSAT 456

Query:   563 IPNWVWEIGNGGLEYXXXXXXXXXXXQRPYSISDLNLMTVLDLHSNQLQGNIPH---PPR 619
               + V                       P  +   + +  LD+ +N+++G +P       
Sbjct:   457 NKSSV-SSDPPSQSIQSLYLSGCGITDFPEILRTQHELGFLDVSNNKIKGQVPGWLWTLP 515

Query:   620 NAVLVDYSNNSFTSSIPGDIGNSMNFT-----IFFSLSSNSITGVIPETICRAKYLLVLD 674
             N   ++ SNN+F S       + ++       I    S+N+ TG IP  IC  + L  LD
Sbjct:   516 NLFYLNLSNNTFISFESSSKKHGLSSVRKPSMIHLFASNNNFTGKIPSFICGLRSLNTLD 575

Query:   675 LSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVP 734
             LS N  +G +P C+ K+   L VLNLR N+LSG L      +  L++LD+  N L G +P
Sbjct:   576 LSENNYNGSIPRCMEKLKSTLFVLNLRQNNLSGGLPKHIFES--LRSLDVGHNLLVGKLP 633

Query:   735 KSLANCRKLEVLDLGNNKIRDTFPCWLKNIXXXXXXXXXXNSFYGSITCRENDDSWPMLQ 794
             +SL     LEVL++ +N+I DTFP WL ++          N+F+G I    ++ ++P L+
Sbjct:   634 RSLIRFSNLEVLNVESNRINDTFPFWLSSLSKLQVLVLRSNAFHGPI----HEATFPELR 689

Query:   795 IVDIASNNFGGRVPQKCITSWKAMMS-DEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGR 853
             I+DI+ N+F G +P +    W AM S  ++E QSN K +     + ++YQD + +  KG 
Sbjct:   690 IIDISHNHFNGTLPTEYFVKWSAMSSLGKNEDQSNEKYMG----SGLYYQDSMVLMNKGL 745

Query:   854 EMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLE 913
              MELV+IL+I+T++DFS N F+G IP+ IG LK L  LN S NAFGG IPS++GNL  LE
Sbjct:   746 AMELVRILTIYTALDFSGNKFEGEIPKSIGLLKELLVLNLSNNAFGGHIPSSMGNLTALE 805

Query:   914 SLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGA 973
             SLD+S N L+ +IP +L +L+FL+ +N SHN L G +P  TQ +  + ++FE N GL G 
Sbjct:   806 SLDVSQNKLTGEIPQELGDLSFLAYMNFSHNQLAGLVPGGTQFRRQNCSAFENNLGLFGP 865

Query:   974 PLN-VC----PPNSSKALPSAPASTDEIDWFFIVMAIGFAVG--FGSVVAPLMFSRRVNK 1026
              L+ VC     P S +   +     DE +  +I  AIGF  G  FG  +  ++ S +  +
Sbjct:   866 SLDEVCRDKHTPASQQNETTETEEEDEEEISWIAAAIGFIPGIVFGLTIGYILVSYKP-E 924

Query:  1027 WYNNLINR 1034
             W+ N   R
Sbjct:   925 WFMNPFGR 932

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 1027 (366.6 bits), Expect = 1.1e-103, P = 1.1e-103
 Identities = 280/783 (35%), Positives = 421/783 (53%)

Query:   278 TILQ-VHTLQTLDLSGNSLLRGSLPDFPKN-SSLRTLMLSYANFSGVLPDSIGNLKNLSR 335
             ++LQ  H L TLDLS N L  G +     N S L TL LS  NFSG +P S+GNL +L+ 
Sbjct:   105 SMLQNFHFLTTLDLSYNHL-SGQISSSIGNLSHLTTLDLSGNNFSGWIPSSLGNLFHLTS 163

Query:   336 LDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKN-LTHLDLSNNALPGAI 394
             L L   N  G IP+SL  L+ L +LDLS+N FVG IPS   S N L+ L L NN L G +
Sbjct:   164 LHLYDNNFGGEIPSSLGNLSYLTFLDLSTNNFVGEIPSSFGSLNQLSILRLDNNKLSGNL 223

Query:   395 SSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSAL 454
                +  +L+ L  + L +N   G++P ++ S+ +L+    + N F G IP  S  +  ++
Sbjct:   224 P-LEVINLTKLSEISLSHNQFTGTLPPNITSLSILESFSASGNNFVGTIPS-SLFTIPSI 281

Query:   455 DTLDLSANRLEGPIPM-SIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNL 513
               + L  N+L G +   +I    NL +L L  N L G +   +I RL NL  L+LS+ N 
Sbjct:   282 TLIFLDNNQLSGTLEFGNISSPSNLLVLQLGGNNLRGPIP-TSISRLVNLRTLDLSHFN- 339

Query:   514 TVNASGDSSFPSQVR---TLRLASCKLKVIPNLKSQSKLF----NLDLSDNQISGEIPNW 566
              +    D +  S ++    L L+        +L +    F    +LDLS N +     + 
Sbjct:   340 -IQGQVDFNIFSHLKLLGNLYLSHSNTTTTIDLNAVLSCFKMLISLDLSGNHVLVTNKSS 398

Query:   567 VWEIGNGGLEYXXXXXXXXXXXQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDY 626
             V +   G +             + P  +     M  LD+ +N+++G +P      + ++Y
Sbjct:   399 VSDPPLGLI--GSLNLSGCGITEFPDILRTQRQMRTLDISNNKIKGQVPS--WLLLQLEY 454

Query:   627 ---SNNSF-----TSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNN 678
                SNN+F     ++ +   +    +   FF  S+N+ +G IP  IC  + L++LDLSNN
Sbjct:   455 MHISNNNFIGFERSTKLEKTVVPKPSMKHFFG-SNNNFSGKIPSFICSLRSLIILDLSNN 513

Query:   679 KLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLA 738
               SG +P C+ K    L  LNLR N LSG+L  T   +  L++LD++ N+L G +P+SL 
Sbjct:   514 NFSGAIPPCVGKFKSTLSDLNLRRNRLSGSLPKTIIKS--LRSLDVSHNELEGKLPRSLI 571

Query:   739 NCRKLEVLDLGNNKIRDTFPCWLKNIXXXXXXXXXXNSFYGSITCRENDDSWPMLQIVDI 798
             +   LEVL++ +N+I DTFP WL ++          N+F+G I    +   +P L+I+DI
Sbjct:   572 HFSTLEVLNVESNRINDTFPFWLSSLKKLQVLVLRSNAFHGRI----HKTRFPKLRIIDI 627

Query:   799 ASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELV 858
             + N+F G +P  C   W  M S E   +  F + +   +   +Y D + +  KG EMELV
Sbjct:   628 SRNHFNGTLPSDCFVEWTGMHSLEKN-EDRFNEKY---MGSGYYHDSMVLMNKGLEMELV 683

Query:   859 KILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLS 918
             +IL I+T++DFS N F+G IP  IG LK L+ LN S N F G IPS++GNL++LESLD+S
Sbjct:   684 RILKIYTALDFSGNKFEGEIPRSIGLLKELHILNLSSNGFTGHIPSSMGNLRELESLDVS 743

Query:   919 MNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAPLNVC 978
              N LS +IP +L NL++L+ +N SHN L G +P  TQ ++ S +SFE N GLCG PL  C
Sbjct:   744 RNKLSGEIPQELGNLSYLAYMNFSHNQLVGQVPGGTQFRTQSASSFEENLGLCGRPLEEC 803

Query:   979 PPNSSKALPSAPASTDEIDWF--FIVMAIGFAVGF--GSVVAPLMFSRRVNKWYNNLINR 1034
                  +  PS  + T E +    +I  AIGF  G   G  +  ++ S +  +W+  ++  
Sbjct:   804 RV-VHEPTPSGESETLESEQVLSWIAAAIGFTPGIVLGLTIGHIVLSSKP-RWFFKVL-- 859

Query:  1035 FIN 1037
             +IN
Sbjct:   860 YIN 862

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 1021 (364.5 bits), Expect = 4.7e-103, P = 4.7e-103
 Identities = 320/915 (34%), Positives = 444/915 (48%)

Query:   153 LVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALY-LDGVNISAPGIEWCQALSSL-- 209
             ++ LDLS S    G L   N N S  L  L +LR L  LD  N    G    Q  SSL  
Sbjct:    85 VIELDLSFS-CLRGQL---NSNSS--LFRLPQLRFLTTLDLSNNDFIG----QIPSSLET 134

Query:   210 VPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADXXXXXXXXXXXX 269
             +  L  L LS  + SG I  S+  L  L  +    N+ S  +P  L              
Sbjct:   135 LSNLTTLDLSRNHFSGRIPSSIGNLSHLIFVDFSHNNFSGQIPSSLGYLSHLTSFNLSYN 194

Query:   270 XXXXXXPETILQVHTLQTLDLSGNSLLRGSLPD-FPKNSSLRTLMLSYANFSGVLPDSIG 328
                   P +I  +  L TL LS NS   G LP        L  L+L   +F G +P S+G
Sbjct:   195 NFSGRVPSSIGNLSYLTTLRLSRNSFF-GELPSSLGSLFHLTDLILDTNHFVGKIPSSLG 253

Query:   329 NLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKN-LTHLDLSN 387
             NL +L+ +DL + N  G IP SL  L+ L    LS N  VG IPS   + N L  L++ +
Sbjct:   254 NLSHLTSIDLHKNNFVGEIPFSLGNLSCLTSFILSDNNIVGEIPSSFGNLNQLDILNVKS 313

Query:   388 NALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFS 447
             N L G+       +L  L  + L NN L G++P ++ S+  L+      N F GP+P  S
Sbjct:   314 NKLSGSFPIA-LLNLRKLSTLSLFNNRLTGTLPSNMSSLSNLKLFDATENHFTGPLPS-S 371

Query:   448 NASYSALDTLDLSANRLEGPIPM-SIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRL 506
               +  +L T+ L  N+L G +   +I    NL +L L +N   G +   +I +L NL  L
Sbjct:   372 LFNIPSLKTITLENNQLNGSLGFGNISSYSNLTVLRLGNNNFRGPIH-RSISKLVNLKEL 430

Query:   507 ELS-YNNLTVNASGDSSFPSQVRTLRLA----SCKLKVIPNLKSQSKLFNLDLSDNQISG 561
             +LS YN   +      S    +  L L+    +  + +   L S   L  LDLS + +S 
Sbjct:   431 DLSNYNTQGLVDFTIFSHLKSIEYLNLSHLNTTTTIDMYEILSSFKLLDTLDLSGSHVST 490

Query:   562 EIPNWVWEIGNGGLEYXXXXXXXX-XXXQRPYSISDLNLMTVLDLHSNQLQGNIPH---- 616
                +    + N  L              + P  +    LM  LD+ +N+++G +P     
Sbjct:   491 TNKS---SLSNSSLVLISQLYLSGCGITEFPKFLRSQELMLTLDISNNKIKGQVPGWLWM 547

Query:   617 -PPRNAVLVDYSNNSFT----SSIPG--DIGNSMNFTIFFSLSSNSITGVIPETICRAKY 669
              P  N   V+ SNN+F     S+  G   I         F  S+N+ TG IP  IC   Y
Sbjct:   548 LPVLN--YVNLSNNTFIGFERSTKLGLTSIQEPPAMRQLFC-SNNNFTGNIPSFICELPY 604

Query:   670 LLVLDLSNNKLSGKMPTCLIKM-SDILGVLNLRGNSLSGTLSVTFPGNC--GLQTLDLNE 726
             L  LD SNNK +G +PTC+  + S  L  LNLR N LSG L    P N    L +LD+  
Sbjct:   605 LSTLDFSNNKFNGSIPTCMGNIQSPYLQALNLRHNRLSGLL----PENIFESLISLDVGH 660

Query:   727 NQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNIXXXXXXXXXXNSFYGSITCREN 786
             NQL G +P+SL++   L +L++ +NKI DTFP WL ++          N+FYG I     
Sbjct:   661 NQLVGKLPRSLSHISSLGLLNVESNKISDTFPLWLSSLQELQVLVLRSNAFYGPI----E 716

Query:   787 DDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMS-DEDEAQSNFKDV-HFELLTDIFYQD 844
                +  L+I+DI+ N F G +P     +W AM S DE+E QSN + + +  + TD FY D
Sbjct:   717 KTQFSKLRIIDISGNQFNGTLPANFFVNWTAMFSLDENEDQSNGETMSNMYMSTDYFYFD 776

Query:   845 VVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPS 904
              + +  KG EMEL ++L +FT IDFS N F+G IP+ IG LK L+ LN S NA  G I S
Sbjct:   777 SMVLMNKGVEMELERVLKVFTVIDFSGNKFEGEIPKSIGLLKELHVLNLSNNALSGHIAS 836

Query:   905 TIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSF 964
             ++GNL  LESLD+S N LS +IP +L  LT+L+ +N SHN L G +P  TQ Q+   +SF
Sbjct:   837 SMGNLMALESLDVSQNKLSGEIPQELGKLTYLAYMNFSHNQLVGLLPGGTQFQTQKCSSF 896

Query:   965 EGNEGLCGAPLN-VCP-----PNSSKALPSAPASTDE-IDWFFIVMAIGFAVG--FGSVV 1015
             E N GL G  L  +C      P  S   P      +E I W  I   IGF +G   G   
Sbjct:   897 EDNHGLYGPSLEKICDIHGKTPQQSDMAPEPEEDEEEVISW--IAAVIGFILGTALGLTF 954

Query:  1016 APLMFSRRVNKWYNN 1030
               ++FS + + W+ N
Sbjct:   955 GCILFSYKPD-WFKN 968

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
 Identities = 277/842 (32%), Positives = 431/842 (51%)

Query:   213 LRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADXXXXXXXXXXXXXXX 272
             L  L LS     G I  S+  L  L+ + L  N  S  +   + +               
Sbjct:   123 LTTLDLSFNDFKGQITSSIENLSHLTYLDLSSNHFSGQILNSIGNLSRLTYLNLFDNQFS 182

Query:   273 XXXPETILQVHTLQTLDLSGNSLLRGSLPDFPKN-SSLRTLMLSYANFSGVLPDSIGNLK 331
                P +I  +  L  LDLS N    G  P      S L TL L    FSG +P SIGNL 
Sbjct:   183 GQAPSSICNLSHLTFLDLSYNRFF-GQFPSSIGGLSHLTTLSLFSNKFSGQIPSSIGNLS 241

Query:   332 NLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKN-LTHLDLSNNAL 390
             NL+ LDL+  N SG IP+ +  L+QL +L L SN FVG IPS   + N LT L + +N L
Sbjct:   242 NLTTLDLSNNNFSGQIPSFIGNLSQLTFLGLFSNNFVGEIPSSFGNLNQLTRLYVDDNKL 301

Query:   391 PGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNAS 450
              G   +    +L+ L  + L NN   G++P ++ S+  L     ++N F G  P F   +
Sbjct:   302 SGNFPNV-LLNLTGLSLLSLSNNKFTGTLPPNITSLSNLMDFDASDNAFTGTFPSFL-FT 359

Query:   451 YSALDTLDLSANRLEGPIPM-SIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELS 509
               +L  + L+ N+L+G +   +I    NL  L + +N   G +  ++I +L  L RL++S
Sbjct:   360 IPSLTYIRLNGNQLKGTLEFGNISSPSNLYELDIGNNNFIGPIP-SSISKLVKLFRLDIS 418

Query:   510 YNNLTVNASGDSSFPSQVRTL---RLA--SCKLKVIPN--LKSQSKLFNLDLSDNQISGE 562
             +  L      D S  S +++L    ++  +   ++  N  L    +L  LDLS N +S  
Sbjct:   419 H--LNTQGPVDFSIFSHLKSLLDLNISHLNTTTRIDLNYFLSYFKRLLLLDLSGNHVSAT 476

Query:   563 IPNWVWEIGNGGLEYXXXXXXXXXXXQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAV 622
               + V +  +  ++            + P  +   + +  LD+ +N+++G +P       
Sbjct:   477 NKSSVSDPPSQLIQ--SLYLSGCGITEFPEFVRTQHELGFLDISNNKIKGQVPDWLWRLP 534

Query:   623 LVDYSNNSFTSSIPGDIGNSMNFTIFFSL-SSNSITGVIPETICRAKYLLVLDLSNNKLS 681
             ++ Y N S  + I     +    ++ + L S+N+  G IP  IC  + L  LDLS+N  +
Sbjct:   535 ILYYVNLSNNTLIGFQRPSKPEPSLLYLLGSNNNFIGKIPSFICGLRSLNTLDLSDNNFN 594

Query:   682 GKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCR 741
             G +P C+  +   L VLNLR N LSG L         L++LD+  NQL G +P+SL+   
Sbjct:   595 GSIPRCMGHLKSTLSVLNLRQNHLSGGLPKQIFEI--LRSLDVGHNQLVGKLPRSLSFFS 652

Query:   742 KLEVLDLGNNKIRDTFPCWLKNIXXXXXXXXXXNSFYGSITCRENDDSWPMLQIVDIASN 801
              LEVL++ +N+I DTFP WL ++          N+F+G I    ++ ++P L+I+DI+ N
Sbjct:   653 TLEVLNVESNRINDTFPFWLSSLPKLQVLVLRSNAFHGPI----HEATFPELRIIDISHN 708

Query:   802 NFGGRVPQKCITSWKAMMS-DEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKI 860
              F G +P +    W AM S  ++E QSN K +     + ++YQD + +  KG  MELV+I
Sbjct:   709 RFNGTLPTEYFVKWSAMSSLGKNEDQSNEKYMG----SGLYYQDSMVLMNKGVAMELVRI 764

Query:   861 LSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMN 920
             L+I+T++DFS N F+G IP+ IG LK L  L+ S NAF G +PS++GNL  LESLD+S N
Sbjct:   765 LTIYTAVDFSGNRFEGEIPKSIGLLKELLVLSLSNNAFSGHMPSSMGNLTALESLDVSKN 824

Query:   921 HLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAPLN-VC- 978
              L+ +IP +L +L+FL+ +N SHN L G +P   Q  + + ++FE N GL G+ L  VC 
Sbjct:   825 KLTGEIPQELGDLSFLAYMNFSHNQLAGLVPGGQQFLTQNCSAFEDNLGLFGSSLEEVCR 884

Query:   979 ---PPNSSKALPSAPASTDEIDWF-FIVMAIGFAVG--FGSVVAPLMFSRRVNKWYNNLI 1032
                 P S +   +     ++ D   +I  AIGF  G  FG +   ++ S +  +W+ N  
Sbjct:   885 DIHTPASHQQFETPETEEEDEDLISWIAAAIGFGPGIAFGLMFGYILVSYKP-EWFMNPF 943

Query:  1033 NR 1034
             +R
Sbjct:   944 DR 945

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 957 (341.9 bits), Expect = 2.9e-96, P = 2.9e-96
 Identities = 293/846 (34%), Positives = 417/846 (49%)

Query:   213 LRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADXXXXXXXXXXXXXXX 272
             L  L  S     G I  S+  L  L+ + L  N  S  +   + +               
Sbjct:    60 LTTLDRSHNDFEGQITSSIENLSHLTSLDLSYNRFSGQILNSIGNLSRLTSLDLSFNQFS 119

Query:   273 XXXPETILQVHTLQTLDLSGNSLLRGSLPDFPKN-SSLRTLMLSYANFSGVLPDSIGNLK 331
                P +I  +  L  L LSGN    G +P    N S L  L LS   F G  P SIG L 
Sbjct:   120 GQIPSSIGNLSHLTFLGLSGNRFF-GQIPSSIGNLSHLTFLGLSGNRFFGQFPSSIGGLS 178

Query:   332 NLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKN-LTHLDLSNNAL 390
             NL+ L L+    SG IP+S+  L+QL+ L LS N F G IPS   + N LT LD+S N L
Sbjct:   179 NLTNLHLSYNKYSGQIPSSIGNLSQLIVLYLSVNNFYGEIPSSFGNLNQLTRLDVSFNKL 238

Query:   391 PGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNAS 450
              G   +    +L+ L  V L NN   G++P ++ S+  L     ++N F G  P F    
Sbjct:   239 GGNFPNV-LLNLTGLSVVSLSNNKFTGTLPPNITSLSNLMAFYASDNAFTGTFPSFLFII 297

Query:   451 YSALDTLDLSANRLEGPIPM-SIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELS 509
              S L  L LS N+L+G +   +I    NL+ L + SN   G +  ++I +L NL  L +S
Sbjct:   298 PS-LTYLGLSGNQLKGTLEFGNISSPSNLQYLNIGSNNFIGPIP-SSISKLINLQELGIS 355

Query:   510 YNNLTVNASGDSSFPSQVRTL---RLASCKLKVIP-N--LKSQSKLFNLDLSDNQISGEI 563
             + N T     D S  S +++L   RL+      I  N  L     L +LDLS N +S   
Sbjct:   356 HLN-TQCRPVDFSIFSHLKSLDDLRLSYLTTTTIDLNDILPYFKTLRSLDLSGNLVSATN 414

Query:   564 PNWVWEIGNGGLEYXXXXXXXXXXXQRPYSISDLNLMTVLDLHSNQLQGNIPH---PPRN 620
              + V                       P  +   + +  LD+ +N+++G +P       N
Sbjct:   415 KSSV-SSDPPSQSIQSLYLSGCGITDFPEILRTQHELGFLDVSNNKIKGQVPGWLWTLPN 473

Query:   621 AVLVDYSNNSFTS-SIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNK 679
                ++ SNN+F     P     SM + +    S+N+ TG IP  IC  + L  LDLS+N 
Sbjct:   474 LFYLNLSNNTFIGFQRPTKPEPSMAYLLG---SNNNFTGKIPSFICELRSLYTLDLSDNN 530

Query:   680 LSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNC--GLQTLDLNENQLGGTVPKSL 737
              SG +P C+  +   L  LNLR N+LSG     FP +    L++LD+  NQL G +P+SL
Sbjct:   531 FSGSIPRCMENLKSNLSELNLRQNNLSGG----FPEHIFESLRSLDVGHNQLVGKLPRSL 586

Query:   738 ANCRKLEVLDLGNNKIRDTFPCWLKNIXXXXXXXXXXNSFYGSITCRENDDSWPMLQIVD 797
                  LEVL++ +N+I D FP WL ++          N+F+G I    N   +P L+I+D
Sbjct:   587 RFFSNLEVLNVESNRINDMFPFWLSSLQKLQVLVLRSNAFHGPI----NQALFPKLRIID 642

Query:   798 IASNNFGGRVPQKCITSWKAMMS-DEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREME 856
             I+ N+F G +P +    W  M S    E  SN   V++  L   +YQD + +  KG E E
Sbjct:   643 ISHNHFNGSLPTEYFVEWSRMSSLGTYEDGSN---VNY--LGSGYYQDSMVLMNKGVESE 697

Query:   857 LVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLD 916
             LV+IL+I+T++DFS N F+G IP+ IG LK L+ LN S NAF G IPS+IGNL  LESLD
Sbjct:   698 LVRILTIYTAVDFSGNKFEGEIPKSIGLLKELHVLNLSNNAFTGHIPSSIGNLTALESLD 757

Query:   917 LSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAPLN 976
             +S N L  +IP ++ NL+ LS +N SHN L G +P   Q  +   +SFEGN GL G+ L 
Sbjct:   758 VSQNKLYGEIPQEIGNLSLLSYMNFSHNQLTGLVPGGQQFLTQRCSSFEGNLGLFGSSLE 817

Query:   977 -VC----PPNSSKALPSAPASTDEIDWF-FIVMAIGFAVG--FGSVVAPLMFSRRVNKWY 1028
              VC     P S +   +     ++ D   +I  AIGF  G  FG +   ++ S +  +W+
Sbjct:   818 EVCRDIHTPASHQQFETPQTEEEDEDLISWIAAAIGFGPGIAFGLMFGYILVSYKP-EWF 876

Query:  1029 NNLINR 1034
              N   R
Sbjct:   877 MNPFGR 882

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
 Identities = 256/749 (34%), Positives = 399/749 (53%)

Query:   309 LRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFV 368
             L TL LSY  FSG +P  I N  +L+ LDL++   SG IP+S+  L+QL +LDLS N+FV
Sbjct:   121 LTTLDLSYNYFSGQIPSCIENFSHLTTLDLSKNYFSGGIPSSIGNLSQLTFLDLSGNEFV 180

Query:   369 GPIPSLHMSKNLTHLDLSNNALPGA--ISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSI 426
             G +P       LT+L + +N L G   +S  + +HLS+L    L  N   G++P ++ S+
Sbjct:   181 GEMPFFGNMNQLTNLYVDSNDLTGIFPLSLLNLKHLSDL---SLSRNQFTGTLPSNMSSL 237

Query:   427 PMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPM-SIFELKNLKILMLSS 485
               L+      N F G +P  S  + ++L +++L  N+L G +   +I     L +L +S+
Sbjct:   238 SNLEYFEAWGNAFTGTLPS-SLFTIASLTSINLRNNQLNGTLEFGNISSPSTLTVLDISN 296

Query:   486 NKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCK-LKVIPNLK 544
             N   G +   +I +  NL  L+LS+  L      D S  + +++L+L +   L     + 
Sbjct:   297 NNFIGPIP-KSISKFINLQDLDLSH--LNTQGPVDFSIFTNLKSLQLLNLSHLNTTTTID 353

Query:   545 SQS-------KLFNLDLSDNQISGEIPNWVWEIGNGGLEYXXXXXXXXXXXQRPYSISDL 597
               +        ++++DLS N +S      V +     L             + P  +   
Sbjct:   354 LNALFSSHLNSIYSMDLSGNHVSATTKISVADHHPTQL-ISQLYLSGCGITEFPELLRSQ 412

Query:   598 NLMTVLDLHSNQLQGNIPH----PPRNAVLVDYSNNSFTS-SIPGDIGNSM--NFTIFFS 650
             + MT LD+ +N+++G +P      P+  + VD SNN FT      + G S+    ++ + 
Sbjct:   413 HKMTNLDISNNKIKGQVPGWLWTLPK-LIFVDLSNNIFTGFERSTEHGLSLITKPSMQYL 471

Query:   651 L-SSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTL 709
             + S+N+ TG IP  IC  + L+ LDLS+N L+G +P C+  +   L  LNLR N L G L
Sbjct:   472 VGSNNNFTGKIPSFICALRSLITLDLSDNNLNGSIPPCMGNLKSTLSFLNLRQNRLGGGL 531

Query:   710 SVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNIXXXXX 769
               +   +  L++LD+  NQL G +P+S      LEVL++ NN+I DTFP WL ++     
Sbjct:   532 PRSIFKS--LRSLDVGHNQLVGKLPRSFIRLSALEVLNVENNRINDTFPFWLSSLKKLQV 589

Query:   770 XXXXXNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAM---MSDEDEAQ 826
                  N+F+G I    +  S+  L+I++++ N F G +P     +W AM   M+ ED +Q
Sbjct:   590 LVLRSNAFHGPI----HHASFHTLRIINLSHNQFSGTLPANYFVNWNAMSSLMATEDRSQ 645

Query:   827 SNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLK 886
               +    F      +Y D V +  KG EMELV+IL I+T++DFS N  +G IP  IG LK
Sbjct:   646 EKYMGDSFR-----YYHDSVVLMNKGLEMELVRILKIYTALDFSENKLEGEIPRSIGLLK 700

Query:   887 SLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNL 946
              L+ LN S NAF G IPS++GNL++LESLD+S N LS +IP +L NL++L+ +N SHN L
Sbjct:   701 ELHVLNLSSNAFTGHIPSSMGNLRELESLDVSQNKLSGEIPQELGNLSYLAYMNFSHNQL 760

Query:   947 EGNIPVSTQLQSFSPTSFEGNEGLCGAPLN-VCPPNSSKALPS-APASTDEID---WFFI 1001
              G +P  TQ +  + +SF+ N GL G+ L  VC    + A     P   +E D   + +I
Sbjct:   761 GGLVPGGTQFRRQNCSSFKDNPGLYGSSLEEVCLDIHAPAPQQHEPPELEEEDREVFSWI 820

Query:  1002 VMAIGFAVG--FGSVVAPLMFSRRVNKWY 1028
               AIGF  G  FG  +  ++   + + W+
Sbjct:   821 AAAIGFGPGIAFGLTIRYILVFYKPD-WF 848

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
 Identities = 302/921 (32%), Positives = 450/921 (48%)

Query:   152 RLVTLDLSSSYSFGGPLKLENPNLSGL-LQNLAELRALYLDGVNISAPGIEWCQALSSLV 210
             ++  LDLS S   G   +LE PN S   LQ+L  +   Y +  N   P  E+ + +    
Sbjct:    98 KVTGLDLSCSCLHG---RLE-PNSSLFRLQHLQSVNLAYNNFTNSPIPA-EFSKFM---- 148

Query:   211 PKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLD--------QNDLSSPVPEFL----ADX 258
              +L  L+LS    SG  H S+  LQ  +++ LD         + LS   P FL     + 
Sbjct:   149 -RLERLNLSRSSFSG--HISIKLLQLTNLVSLDLSSSFPYSPSSLSIEKPLFLHLLALNF 205

Query:   259 XXXXXXXXXXXXXXXXXPETILQVHTLQTLDLSGNSLLRGSLPDFPKN-SSLRTLMLSY- 316
                              P     + +L++L L G +LL G  P+      +L ++ L + 
Sbjct:   206 MNLRELDMSSVDISSAIPIEFSYMWSLRSLTLKGCNLL-GRFPNSVLLIPNLESISLDHN 264

Query:   317 ANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPS-LH 375
              N  G LP+ + N  +L +L +   + SG+IP S++ L  L  L L  + F G IPS L 
Sbjct:   265 LNLEGSLPNFLRN-NSLLKLSIYNTSFSGTIPNSISNLKHLTSLKLQQSAFSGRIPSSLR 323

Query:   376 MSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLA 435
                +L++L LS N   G I S+   +L  L   D+ +N LNG+ P SL ++  L+ + + 
Sbjct:   324 SLSHLSNLVLSENNFVGEIPSSV-SNLKQLTLFDVSDNNLNGNFPSSLLNLNQLRYIDIC 382

Query:   436 NNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLA 495
             +N F G +P  + +  S L+      N   G IP S+F + +L  L LS N+LN T  + 
Sbjct:   383 SNHFTGFLPP-TISQLSNLEFFSACDNSFTGSIPSSLFNISSLTTLGLSYNQLNDTTNIK 441

Query:   496 AIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKV-IPNLKSQSKLFNLDL 554
              I  L NL RL L  NN   +      F S  R + LA   + +   N+ S S+ F+  L
Sbjct:   442 NISLLHNLQRLLLDNNNFKASQVDLDVFLSLKRLVSLALSGIPLSTTNITSDSE-FSSHL 500

Query:   555 SDNQISG----EIPNWVWEIGNGGLEYXXXXXXXXXXXQRPYSISDLNLMTVLDLHSNQL 610
                ++SG    E P ++    N  L             Q P  +  L  ++ +DL +N L
Sbjct:   501 EYLELSGCNIIEFPEFIRNQRN--LS-SIDLSNNNIKGQVPNWLWRLPELSTVDLSNNSL 557

Query:   611 ---QGNIPH-PPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICR 666
                 G++        V++D S+N+F     G +        +F  S N+ TG IP +IC 
Sbjct:   558 IGFNGSLKALSGSKIVMLDLSSNAFQ----GPLFMPPRGIQYFLGSYNNFTGYIPPSICG 613

Query:   667 AKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNE 726
                 L+LDLSNN L G +P CL      L VLNLR NSL G+L   F     L +LD++ 
Sbjct:   614 LANPLILDLSNNNLHGLIPRCLEAQMSSLSVLNLRNNSLDGSLPNIFMNAKVLSSLDVSH 673

Query:   727 NQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNIXXXXXXXXXXNSFYGSITCREN 786
             N L G +P SLA C  LE+L++ +N I DTFP WL ++          N+F G  T    
Sbjct:   674 NTLEGKLPASLAGCSALEILNVESNNINDTFPFWLNSLPKLQVLVLRSNNFRG--TLHNV 731

Query:   787 DDSW---PMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQ 843
             D  W   P+L+I D++ N+F G +P     +W A+   E E Q       +      +Y 
Sbjct:   732 DGVWFGFPLLRITDVSHNDFVGTLPSDYFMNWTAISKSETELQYIGDPEDYG-----YYT 786

Query:   844 DVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIP 903
              +V +  KG  ME+ +IL+ +T IDF+ N   G IPE +G LK L+ LN S NAF G IP
Sbjct:   787 SLVLMN-KGVSMEMQRILTKYTVIDFAGNKIQGKIPESVGILKELHVLNLSSNAFTGHIP 845

Query:   904 STIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTS 963
             S++ NL  LESLD+S N +  +IP +L  L+ L  +N+SHN L G+IP  TQ    + +S
Sbjct:   846 SSLANLTNLESLDISQNKIGGEIPPELGTLSSLEWINVSHNQLVGSIPQGTQFHRQNCSS 905

Query:   964 FEGNEGLCGAPL-NVC----PPNSSKA-LPSAPASTDEIDWF--FIVMAIGFAVG--FGS 1013
             +EGN G+ G+ L +VC     P   +A LP + +S+ E D    +I   +GFA G  FG 
Sbjct:   906 YEGNPGIYGSSLKDVCGDIHAPRPPQAVLPHSSSSSSEEDELISWIAACLGFAPGMVFGL 965

Query:  1014 VVAPLMFSRRVNKWYNNLINR 1034
              +  +M S + ++W+ +   R
Sbjct:   966 TMGYIMTSHK-HEWFMDTFGR 985

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2096339 RLP30 "receptor like protein 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 827 (296.2 bits), Expect = 8.0e-91, Sum P(2) = 8.0e-91
 Identities = 242/703 (34%), Positives = 363/703 (51%)

Query:   356 QLVYLDLSS---NKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRN 412
             ++V LDLS    N  + P   L   + L +L LS+  L G ++S+   +LS L ++DL +
Sbjct:    86 EVVSLDLSYVLLNNSLKPTSGLFKLQQLQNLTLSDCHLYGEVTSS-LGNLSRLTHLDLSS 144

Query:   413 NALNGSIPRSLFSIPMLQQLLLANNKFGGPIP-EFSNASYSALDTLDLSANR--LEGPIP 469
             N L G +  S+  +  L+ LLL+ N F G IP  F+N +   L +LD+S+N+  LE    
Sbjct:   145 NQLTGEVLASVSKLNQLRDLLLSENSFSGNIPTSFTNLT--KLSSLDISSNQFTLEN-FS 201

Query:   470 MSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSF--PS-Q 526
               +  L +L  L ++SN    T+  + +  L NL   ++  N+  V     S F  PS Q
Sbjct:   202 FILPNLTSLSSLNVASNHFKSTLP-SDMSGLHNLKYFDVRENSF-VGTFPTSLFTIPSLQ 259

Query:   527 VRTLRLASCKLKV-IPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYXXXXXXXX 585
             +  L        +   N+ S S+L++L+L+DN+  G IP ++ EI +             
Sbjct:   260 IVYLEGNQFMGPIKFGNISSSSRLWDLNLADNKFDGPIPEYISEIHS---LIVLDLSHNN 316

Query:   586 XXXQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTS---SIPGDI-GN 641
                  P SIS L  +  L L +N L+G +P      + V  S+NSF S   S  G + G 
Sbjct:   317 LVGPIPTSISKLVNLQHLSLSNNTLEGEVPGCLWGLMTVTLSHNSFNSFGKSSSGALDGE 376

Query:   642 SMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLR 701
             SM       L SNS+ G  P  IC+ ++L  LDLSNN  +G +P CL   +  L  L LR
Sbjct:   377 SMQE---LDLGSNSLGGPFPHWICKQRFLKYLDLSNNLFNGSIPPCLKNSTYWLKGLVLR 433

Query:   702 GNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWL 761
              NS SG L   F     L +LD++ N+L G +PKSL NC  +E+L++G+N I+DTFP WL
Sbjct:   434 NNSFSGFLPDVFVNASMLLSLDVSYNRLEGKLPKSLINCTGMELLNVGSNIIKDTFPSWL 493

Query:   762 KNIXXXXXXXXXXNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSD 821
              ++          N+FYGS+        +  L+++DI+ N F G +     ++W+ M++ 
Sbjct:   494 VSLPSLRVLILRSNAFYGSLYYDHISFGFQHLRLIDISQNGFSGTLSPLYFSNWREMVTS 553

Query:   822 E-DEAQSNF--KDVHF-ELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGP 877
               +E  SN   +D +  E   +  + + +T+ +KG E + ++I   F +IDFS N F G 
Sbjct:   554 VLEENGSNIGTEDWYMGEKGPEFSHSNSMTMIYKGVETDFLRIPYFFRAIDFSGNRFFGN 613

Query:   878 IPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLS 937
             IPE +G LK L  LN S N+F   IP ++ NL  LE+LDLS N LS  IP  L +L+FLS
Sbjct:   614 IPESVGLLKELRLLNLSGNSFTSNIPQSLANLTNLETLDLSRNQLSGHIPRDLGSLSFLS 673

Query:   938 VLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAPLNVCPPN---SSKALPSAPASTD 994
              +N SHN LEG +P+ TQ QS   ++F  N  L G    +C      SS  L S   S  
Sbjct:   674 TMNFSHNLLEGPVPLGTQFQSQHCSTFMDNLRLYGLE-KICGKAHAPSSTPLESEEFSEP 732

Query:   995 E---IDWFFIVMAIGFAVGFGSVVAPLMFSRRVNKWYNNLINR 1034
             E   I+W    +A G  V  G V+  + F+   ++W+    +R
Sbjct:   733 EEQVINWIAAAIAYGPGVFCGLVIGHIFFTAHKHEWFMEKFHR 775

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
 Identities = 261/766 (34%), Positives = 375/766 (48%)

Query:   281 QVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLAR 340
             QV +L   +   N+ L+ +   F K   LR L L+  N  G +P S+GNL +L+ ++L  
Sbjct:    85 QVISLDIPNTFLNNYLKTNSSLF-KLQYLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYF 143

Query:   341 CNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPS-LHMSKNLTHLDLSNNALPGAISST-- 397
                 G IP S+  L QL +L L++N   G IPS L     L +L+L +N L G I  +  
Sbjct:   144 NKFVGEIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIPDSIG 203

Query:   398 DWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTL 457
             D + L NL    L +N L G IP SL ++  L  L+L +N+  G +P  S  +   L  +
Sbjct:   204 DLKQLRNL---SLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPA-SIGNLIELRVM 259

Query:   458 DLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNA 517
                 N L G IP+S   L  L I +LSSN    T     +    NL   ++SYN+ +   
Sbjct:   260 SFENNSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFD-MSIFHNLEYFDVSYNSFSGPF 318

Query:   518 SGDSSFPSQVRTLRLASCKLK---VIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGG 574
                      + ++ L   +        N  S +KL +L L  N++ G IP  +  + N  
Sbjct:   319 PKSLLLIPSLESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLN-- 376

Query:   575 LEYXXXXXXXXXXXQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSS 634
             LE              P +IS L  +  LDL  N L+G +P        +  S+NSF+S 
Sbjct:   377 LEELDISHNNFTGAIPP-TISKLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSF 435

Query:   635 IPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDI 694
                +            L+SNS  G IP  IC+   L  LDLSNN  SG +P+C+   S  
Sbjct:   436 --ENTSQEEALIEELDLNSNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGS 493

Query:   695 LGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIR 754
             +  LNL  N+ SGTL   F     L +LD++ NQL G  PKSL NC+ LE++++ +NKI+
Sbjct:   494 IKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIK 553

Query:   755 DTFPCWLKNIXXXXXXXXXXNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITS 814
             D FP WL+++          N FYG +  R     +  L+I+DI+ NNF G +P    ++
Sbjct:   554 DIFPSWLESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSN 613

Query:   815 WKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNF 874
             WK M +  +E      +  F    D +Y ++  V  KG +M   +I   F +IDFS N  
Sbjct:   614 WKDMTTLTEEMDQYMTE--FWRYADSYYHEMEMVN-KGVDMSFERIRRDFRAIDFSGNKI 670

Query:   875 DGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLT 934
             +G IPE +G LK L  LN S NAF   IP  + NL +LE+LD+S N LS QIP  LA L+
Sbjct:   671 NGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALS 730

Query:   935 FLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAPLNVCPP----NSSKALPSAP 990
             FLS +N SHN L+G +P  TQ Q    +SF  N GL G   ++C      N +  LP   
Sbjct:   731 FLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLDNPGLYGLE-DICRDTGALNPTSQLPEDL 789

Query:   991 ASTDE--IDWFFIVMAIGFAVGFGSVVAPLMFSRRVNKWYNNLINR 1034
             +  +E   +W    +A G  V  G V+     S   ++W+     R
Sbjct:   790 SEAEENMFNWVAAAIAYGPGVLCGLVIGHFYTSHN-HEWFTEKFGR 834

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2094603 RLP37 "receptor like protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
 Identities = 264/758 (34%), Positives = 388/758 (51%)

Query:   313 MLSY-ANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPI 371
             ++SY AN S     S+  L++L  L+L+ CNL G IP+S+  L+ L YLDLS N+ VG  
Sbjct:    93 LVSYIANTSLKSSSSLFKLRHLRHLELSHCNLQGEIPSSIGNLSHLTYLDLSFNQLVGEF 152

Query:   372 P-SLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQ 430
             P S+     L ++DL  NAL G I  T + +L+ L  + LR N   G     L ++  L 
Sbjct:   153 PVSIGNLNQLEYIDLWVNALGGNIP-TSFANLTKLSELHLRQNQFTGG-DIVLSNLTSLS 210

Query:   431 QLLLANNKFGGPIPEFSNASYSALDTLD---LSANRLEGPIPMSIFELKNLKILMLSSNK 487
              + L++N F   I    +A  S L  L+   +S N   GP P  +  + +L  + LS N+
Sbjct:   211 IVDLSSNYFNSTI----SADLSQLHNLERFWVSENSFFGPFPSFLLMIPSLVDICLSENQ 266

Query:   488 LNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTL-RLASCKLKVIPNLKSQ 546
               G +          L  L++SYNNL      D   P  + TL  L   +L    N + Q
Sbjct:   267 FEGPINFGNTTSSSKLTELDVSYNNL------DGLIPKSISTLVSLEHLELSH-NNFRGQ 319

Query:   547 -----SKLFNLD---LSDNQISGEIPNWVWEIGNGGLEYXXXXXXXXXXXQRPYSISDLN 598
                  SKL NLD   LS N   G++P+ ++++ N  LE+           + P SIS L 
Sbjct:   320 VPSSISKLVNLDGLYLSHNNFGGQVPSSIFKLVN--LEHLDLSHNDFGG-RVPSSISKLV 376

Query:   599 LMTVLDLHSNQLQGNIPHPP-RNAVL--VDYSNNSFTS-SIPGDIGNSMNFTIFFSLSSN 654
              ++ LDL  N+ +G++P    R++ L  VD S NSF S     ++G+  +    + LSSN
Sbjct:   377 NLSSLDLSYNKFEGHVPQCIWRSSKLDSVDLSYNSFNSFGRILELGDE-SLERDWDLSSN 435

Query:   655 SITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFP 714
             S+ G IP+ IC  ++   LD SNN L+G +P CL   +D   +LNLR NSLSG +     
Sbjct:   436 SLQGPIPQWICNFRFFSFLDFSNNHLNGSIPQCLKNSTDFY-MLNLRNNSLSGFMPDFCM 494

Query:   715 GNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNIXXXXXXXXXX 774
                 L +LD++ N L G +P+S  NC  +E L++  NKI+DTFP WL ++          
Sbjct:   495 DGSMLGSLDVSLNNLVGKLPESFINCEWMEYLNVRGNKIKDTFPVWLGSLQYLTVLVLRS 554

Query:   775 NSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDED------EAQSN 828
             N+FYG +        +P ++I+DI++NNF G +PQ    +W  M S         + + N
Sbjct:   555 NTFYGPVYKASAYLGFPSMRIMDISNNNFVGSLPQDYFANWTEMSSVWQRPMLTLDYKRN 614

Query:   829 FKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSL 888
                     + D  +QD + + +KG + +  +I   F  IDFS N F G IP  IG L  L
Sbjct:   615 IAIPGSNYMGDDNHQDSIDLVYKGVDTDFEQIFGGFKVIDFSGNRFSGHIPRSIGLLSEL 674

Query:   889 YGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEG 948
               LN S NAF G IP ++ ++ +LE+LDLS N+LS +IP  L  L+FLS +N SHN+LEG
Sbjct:   675 LHLNLSGNAFTGNIPPSLASITKLETLDLSRNNLSGEIPRGLGKLSFLSNINFSHNHLEG 734

Query:   949 NIPVSTQLQSFSPTSFEGNEGLCGAPLNVCP----PNSSKALPSAPASTDE---IDWFFI 1001
              +P STQ  S + +SF GN  L G    +C     P  +   P  P    E   ++W   
Sbjct:   735 LVPQSTQFGSQNCSSFMGNPRLYGLD-QICGETHVPIPTSLHPEEPLLEPEETVLNWIAA 793

Query:  1002 VMAIGFAVGFGSVVAPLMFSRRVNKWYNNLINRFINCR 1039
              +A G  V  G V+  +  S + +KW   L+ +F  CR
Sbjct:   794 AIAFGPGVFCGLVIGHIFTSYK-HKW---LMAKF--CR 825

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1042
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-65
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-64
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-55
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-10
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-08
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-06
PLN03210	1153	PLN03210, PLN03210, Resistant to P	3e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
COG5238	388	COG5238, RNA1, Ran GTPase-activating protein (RanG	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  237 bits (607), Expect = 5e-65
 Identities = 205/698 (29%), Positives = 315/698 (45%), Gaps = 109/698 (15%)

Query: 329  NLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNN 388
            N   +  +DL+  N+SG I +++ +L  +  ++LS+N+  GPIP                
Sbjct: 67   NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIP---------------- 110

Query: 389  ALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSN 448
                 I +T     S+L Y++L NN   GSIPR   SIP L+ L L+NN   G IP    
Sbjct: 111  ---DDIFTTS----SSLRYLNLSNNNFTGSIPRG--SIPNLETLDLSNNMLSGEIPN-DI 160

Query: 449  ASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLEL 508
             S+S+L  LDL  N L G IP S+  L +L+ L L+SN+L G +    + ++++L  + L
Sbjct: 161  GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP-RELGQMKSLKWIYL 219

Query: 509  SYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVW 568
             YNNL    SG+   P ++  L                + L +LDL  N ++G IP+ + 
Sbjct: 220  GYNNL----SGE--IPYEIGGL----------------TSLNHLDLVYNNLTGPIPSSLG 257

Query: 569  EIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSN 628
             + N  L+YL L  N LS    P SI  L                     +  + +D S+
Sbjct: 258  NLKN--LQYLFLYQNKLSG-PIPPSIFSL---------------------QKLISLDLSD 293

Query: 629  NSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCL 688
            NS +  IP  +    N  I   L SN+ TG IP  +     L VL L +NK SG++P  L
Sbjct: 294  NSLSGEIPELVIQLQNLEIL-HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352

Query: 689  IKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDL 748
             K ++ L VL+L  N+L+G +      +  L  L L  N L G +PKSL  CR L  + L
Sbjct: 353  GKHNN-LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRL 411

Query: 749  GNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVP 808
             +N      P     +  +  L + +N+  G I  R+ D   P LQ++ +A N F G +P
Sbjct: 412  QDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD--MPSLQMLSLARNKFFGGLP 469

Query: 809  QKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSID 868
                +     + + D +++ F                      G     +  LS    + 
Sbjct: 470  D---SFGSKRLENLDLSRNQFS---------------------GAVPRKLGSLSELMQLK 505

Query: 869  FSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPI 928
             S N   G IP+++   K L  L+ S N   G IP++   +  L  LDLS N LS +IP 
Sbjct: 506  LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565

Query: 929  QLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAPLNVCPPNSSKALPS 988
             L N+  L  +N+SHN+L G++P +    + + ++  GN  LCG        +++  LP 
Sbjct: 566  NLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGG-------DTTSGLPP 618

Query: 989  APASTDEIDWFFIVMAIGFAVGFGSVVA-PLMFSRRVN 1025
                     W+F +     A    ++VA   +F R  N
Sbjct: 619  CKRVRKTPSWWFYITCTLGAFLVLALVAFGFVFIRGRN 656

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  236 bits (603), Expect = 1e-64
 Identities = 222/721 (30%), Positives = 325/721 (45%), Gaps = 154/721 (21%)

Query: 24  VLVSGQCQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSTDCCTWCGVDCDEAGRVIGLDL 83
            L      +++  LLL  KSS+  N  L + +  W+ S D C W G+ C+ + RV+ +DL
Sbjct: 20  FLNFSMLHAEELELLLSFKSSI--NDPLKY-LSNWNSSADVCLWQGITCNNSSRVVSIDL 76

Query: 84  SEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLT-NLTHLNLSNAGFAGQ 142
           S ++ISG+I  SS +  L Y+Q++NL+ N  +   IP  +   + +L +LNLSN  F G 
Sbjct: 77  SGKNISGKI--SSAIFRLPYIQTINLSNNQLSG-PIPDDIFTTSSSLRYLNLSNNNFTGS 133

Query: 143 IPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEW 202
           IP    ++  L TLDLS++   G     E PN  G   +                     
Sbjct: 134 IP--RGSIPNLETLDLSNNMLSG-----EIPNDIGSFSS--------------------- 165

Query: 203 CQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLT 262
                     L+VL L    L G I  SL  L SL  + L  N L   +P  L       
Sbjct: 166 ----------LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG------ 209

Query: 263 SLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGV 322
                                                     +  SL+ + L Y N SG 
Sbjct: 210 ------------------------------------------QMKSLKWIYLGYNNLSGE 227

Query: 323 LPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIP-SLHMSKNLT 381
           +P  IG L +L+ LDL   NL+G IP+SL  L  L YL L  NK  GPIP S+   + L 
Sbjct: 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI 287

Query: 382 HLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGG 441
            LDLS+N+L G I     + L NL  + L +N   G IP +L S+P LQ L L +NKF G
Sbjct: 288 SLDLSDNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG 346

Query: 442 PIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTV--QLAAIQR 499
            IP+ +   ++ L  LDLS N L G IP  +    NL  L+L SN L G +   L A + 
Sbjct: 347 EIPK-NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405

Query: 500 LRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQI 559
           LR   R+ L  N+     SG+   PS+   L L                ++ LD+S+N +
Sbjct: 406 LR---RVRLQDNSF----SGE--LPSEFTKLPL----------------VYFLDISNNNL 440

Query: 560 SGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPR 619
            G I +  W+               + SLQ            +L L  N+  G +P    
Sbjct: 441 QGRINSRKWD---------------MPSLQ------------MLSLARNKFFGGLPDSFG 473

Query: 620 NAVL--VDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSN 677
           +  L  +D S N F+ ++P  +G S++  +   LS N ++G IP+ +   K L+ LDLS+
Sbjct: 474 SKRLENLDLSRNQFSGAVPRKLG-SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532

Query: 678 NKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSL 737
           N+LSG++P    +M  +L  L+L  N LSG +         L  ++++ N L G++P + 
Sbjct: 533 NQLSGQIPASFSEMP-VLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTG 591

Query: 738 A 738
           A
Sbjct: 592 A 592

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  207 bits (527), Expect = 7e-55
 Identities = 199/626 (31%), Positives = 277/626 (44%), Gaps = 90/626 (14%)

Query: 189 YLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLS 248
           YL   N SA    W     +   ++  + LS   +SG I  ++ +L  +  I L  N LS
Sbjct: 47  YLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS 106

Query: 249 SPVPEFLADFFNLTS----LNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFP 304
            P+P+   D F  +S    LNLS++   G+ P                    RGS+P   
Sbjct: 107 GPIPD---DIFTTSSSLRYLNLSNNNFTGSIP--------------------RGSIP--- 140

Query: 305 KNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSS 364
              +L TL LS    SG +P+ IG+  +L  LDL    L G IP SL  LT L +L L+S
Sbjct: 141 ---NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197

Query: 365 NKFVGPIPS-LHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSL 423
           N+ VG IP  L   K+L  + L  N L G I   +   L++L ++DL  N L G IP SL
Sbjct: 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP-YEIGGLTSLNHLDLVYNNLTGPIPSSL 256

Query: 424 FSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILML 483
            ++  LQ L L  NK  GPIP  S  S   L +LDLS N L G IP  + +L+NL+IL L
Sbjct: 257 GNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315

Query: 484 SSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIP-N 542
            SN   G +   A+  L  L  L+L  N      SG+                   IP N
Sbjct: 316 FSNNFTGKIP-VALTSLPRLQVLQLWSNKF----SGE-------------------IPKN 351

Query: 543 LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTV 602
           L   + L  LDLS N ++GEIP  +   GN  L  L L  N L   + P S+     +  
Sbjct: 352 LGKHNNLTVLDLSTNNLTGEIPEGLCSSGN--LFKLILFSNSLEG-EIPKSLGACRSLRR 408

Query: 603 LDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPE 662
           + L  N   G +P             + FT          +    F  +S+N++ G I  
Sbjct: 409 VRLQDNSFSGELP-------------SEFTK---------LPLVYFLDISNNNLQGRINS 446

Query: 663 TICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTL 722
                  L +L L+ NK  G +P      S  L  L+L  N  SG +         L  L
Sbjct: 447 RKWDMPSLQMLSLARNKFFGGLPDSF--GSKRLENLDLSRNQFSGAVPRKLGSLSELMQL 504

Query: 723 DLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSIT 782
            L+EN+L G +P  L++C+KL  LDL +N++    P     +  L  L L  N   G I 
Sbjct: 505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564

Query: 783 CRENDDSWPMLQIVDIASNNFGGRVP 808
             +N  +   L  V+I+ N+  G +P
Sbjct: 565 --KNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 83.3 bits (206), Expect = 3e-16
 Identities = 57/183 (31%), Positives = 79/183 (43%), Gaps = 20/183 (10%)

Query: 850  WKGREMELVKILS--IFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIG 907
            W G + +            +        G IP  I +L+ L  +N S N+  G IP ++G
Sbjct: 404  WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463

Query: 908  NLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFE-- 965
            ++  LE LDLS N  +  IP  L  LT L +LNL+ N+L G +P +   +     SF   
Sbjct: 464  SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFT 523

Query: 966  GNEGLCGAP-LNVCPPNSSKALPSAPASTDEIDWFFIVMAIGFAVGFGSVVAPLMF--SR 1022
             N GLCG P L  C P+ S                 I +A G +V F  +V   M    R
Sbjct: 524  DNAGLCGIPGLRACGPHLSVGAK-------------IGIAFGVSVAFLFLVICAMCWWKR 570

Query: 1023 RVN 1025
            R N
Sbjct: 571  RQN 573

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 79.1 bits (195), Expect = 8e-15
 Identities = 93/316 (29%), Positives = 145/316 (45%), Gaps = 44/316 (13%)

Query: 77  RVIGLDLSEESISGRIDN----------------------SSPLLSLKYLQSLNLAFNMF 114
           ++I LDLS+ S+SG I                           L SL  LQ L L  N F
Sbjct: 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344

Query: 115 NATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPL------ 168
           +  EIP  LG   NLT L+LS     G+IP  + +   L  L L S+ S  G +      
Sbjct: 345 SG-EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN-SLEGEIPKSLGA 402

Query: 169 -------KLENPNLSG-LLQNLAELRALYLDGVNISAPGIEW-CQALSSLVPKLRVLSLS 219
                  +L++ + SG L     +L  +Y   ++IS   ++    +    +P L++LSL+
Sbjct: 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYF--LDISNNNLQGRINSRKWDMPSLQMLSLA 460

Query: 220 SCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETI 279
                G + P     + L  + L +N  S  VP  L     L  L LS + L+G  P+ +
Sbjct: 461 RNKFFGGL-PDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL 519

Query: 280 LQVHTLQTLDLSGNSLLRGSLPD-FPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDL 338
                L +LDLS N L  G +P  F +   L  L LS    SG +P ++GN+++L ++++
Sbjct: 520 SSCKKLVSLDLSHNQL-SGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNI 578

Query: 339 ARCNLSGSIPTSLAKL 354
           +  +L GS+P++ A L
Sbjct: 579 SHNHLHGSLPSTGAFL 594

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 72.5 bits (178), Expect = 6e-13
 Identities = 42/114 (36%), Positives = 66/114 (57%), Gaps = 3/114 (2%)

Query: 264 LNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLP-DFPKNSSLRTLMLSYANFSGV 322
           L L + GL G  P  I ++  LQ+++LSGNS +RG++P      +SL  L LSY +F+G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNS-IRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 323 LPDSIGNLKNLSRLDLARCNLSGSIPTSL-AKLTQLVYLDLSSNKFVGPIPSLH 375
           +P+S+G L +L  L+L   +LSG +P +L  +L      + + N  +  IP L 
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLR 535

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.7 bits (155), Expect = 4e-10
 Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 408 VDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGP 467
           + L N  L G IP  +  +  LQ + L+ N   G IP  S  S ++L+ LDLS N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP-PSLGSITSLEVLDLSYNSFNGS 481

Query: 468 IPMSIFELKNLKILMLSSNKLNGTVQLAAIQRL 500
           IP S+ +L +L+IL L+ N L+G V  A   RL
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 58.9 bits (143), Expect = 4e-09
 Identities = 81/342 (23%), Positives = 119/342 (34%), Gaps = 82/342 (23%)

Query: 282 VHTLQTLDLSGNSLLRGSLPDFPK----NSSLRTLMLSYANFSG-------VLPDSIGNL 330
           +  LQ L L GN+L   +            SL+ L LS  N +G        L   +   
Sbjct: 22  LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLS-LNETGRIPRGLQSLLQGLTKG 80

Query: 331 KNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNAL 390
             L  LDL+   L                         G + SL  S +L  L L+NN L
Sbjct: 81  CGLQELDLSDNALGPDG--------------------CGVLESLLRSSSLQELKLNNNGL 120

Query: 391 ---PGAISSTDW-EHLSNLVYVDLRNNALNG----SIPRSLFSIPMLQQLLLANNKFGGP 442
                 + +    +    L  + L  N L G    ++ ++L +   L++L LANN  G  
Sbjct: 121 GDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180

Query: 443 IPEFSNASYSALDTL--DLSANRLEGPIPMSIFELKNLKILMLSSNKLN--GTVQLA-AI 497
                      +  L   L AN              NL++L L++N L   G   LA  +
Sbjct: 181 ----------GIRALAEGLKAN-------------CNLEVLDLNNNGLTDEGASALAETL 217

Query: 498 QRLRNLIRLELSYNNLTVN-----ASGDSSFPSQVRTLRLASCKLK------VIPNLKSQ 546
             L++L  L L  NNLT       AS   S    + TL L+   +       +   L  +
Sbjct: 218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK 277

Query: 547 SKLFNLDLSDNQISGEIPNWVWEIG---NGGLEYLNLSHNLL 585
             L  LDL  N+   E    + E        LE L +  +  
Sbjct: 278 ESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 56.9 bits (137), Expect = 3e-08
 Identities = 79/288 (27%), Positives = 123/288 (42%), Gaps = 14/288 (4%)

Query: 230 SLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLD 289
            L +L +L+ + LD N+++   P       NL  L+LS + +  + P  +  +  L+ LD
Sbjct: 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLD 169

Query: 290 LSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPT 349
           LS N L           S+L  L LS    S  LP  I  L  L  LDL+  N    + +
Sbjct: 170 LSFNDLSDLP-KLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSN-NSIIELLS 226

Query: 350 SLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVD 409
           SL+ L  L  L+LS+NK      S+    NL  LDLSNN +    S +    L+NL  +D
Sbjct: 227 SLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQI---SSISSLGSLTNLRELD 283

Query: 410 LRNNALNGSIP-RSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPI 468
           L  N+L+ ++P  +L  + +   L L        +   S    + +       +  E   
Sbjct: 284 LSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNIL------SNGETSS 337

Query: 469 PMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVN 516
           P ++  L++L  L    N L+ +     I +  N I   L      VN
Sbjct: 338 PEALSILESLNNLWTLDNALDESNLNRYIVKNPNAIGSLLDLVKKHVN 385

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 52/207 (25%), Positives = 78/207 (37%), Gaps = 27/207 (13%)

Query: 624 VDYSNNSFTSSIPGDIGN-SMNFTI-FFSLSSNSITGVIPETICRA-----KYLLVLDLS 676
           +D S+N+      G + +   + ++    L++N +       + +        L  L L 
Sbjct: 86  LDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLG 145

Query: 677 NNKLSGKMPT----CLIKMSDILGVLNLRGNSLSG----TLSVTFPGNCGLQTLDLNENQ 728
            N+L G         L    D L  LNL  N +       L+     NC L+ LDLN N 
Sbjct: 146 RNRLEGASCEALAKALRANRD-LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204

Query: 729 LGGTVPKSLANC----RKLEVLDLGNNKIRDTFPCWLKNI-----SSLRVLVLRSNSF-- 777
           L      +LA      + LEVL+LG+N + D     L +       SL  L L  N    
Sbjct: 205 LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD 264

Query: 778 YGSITCRENDDSWPMLQIVDIASNNFG 804
            G+    E       L  +D+  N FG
Sbjct: 265 DGAKDLAEVLAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 53.5 bits (129), Expect = 3e-07
 Identities = 62/265 (23%), Positives = 91/265 (34%), Gaps = 65/265 (24%)

Query: 120 PSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLL 179
             GL     L  L+LS+          + ++ R  +L           LKL N  L    
Sbjct: 74  LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQE---------LKLNNNGLGD-- 122

Query: 180 QNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKL----Q 235
                       G+ +        + L  L P L  L L    L G    +LAK     +
Sbjct: 123 -----------RGLRLL------AKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANR 165

Query: 236 SLSVICLDQNDLSSP----VPEFLADFFNLTSLNLSSSGLN----GTFPETILQVHTLQT 287
            L  + L  N +       + E L    NL  L+L+++GL         ET+  + +L+ 
Sbjct: 166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEV 225

Query: 288 LDLSGNSL----LRGSLPDFPK-NSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCN 342
           L+L  N+L               N SL TL LS             ++ +    DLA   
Sbjct: 226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN-----------DITDDGAKDLAE-- 272

Query: 343 LSGSIPTSLAKLTQLVYLDLSSNKF 367
                   LA+   L+ LDL  NKF
Sbjct: 273 -------VLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 5e-07
 Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 651 LSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTL 709
           LS NSI G IP ++     L VLDLS N  +G +P  L +++  L +LNL GNSLSG +
Sbjct: 449 LSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS-LRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 6e-07
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 2/87 (2%)

Query: 722 LDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSI 781
           L L+   L G +P  ++  R L+ ++L  N IR   P  L +I+SL VL L  NSF GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 782 TCRENDDSWPMLQIVDIASNNFGGRVP 808
              E+      L+I+++  N+  GRVP
Sbjct: 483 P--ESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 6e-07
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 673 LDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGT 732
           L L N  L G +P  + K+   L  +NL GNS+ G +  +      L+ LDL+ N   G+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRH-LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 733 VPKSLANCRKLEVLDLGNNKIRDTFP 758
           +P+SL     L +L+L  N +    P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.7 bits (124), Expect = 2e-06
 Identities = 29/84 (34%), Positives = 42/84 (50%)

Query: 698 LNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTF 757
           L L    L G +         LQ+++L+ N + G +P SL +   LEVLDL  N    + 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 758 PCWLKNISSLRVLVLRSNSFYGSI 781
           P  L  ++SLR+L L  NS  G +
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.4 bits (123), Expect = 2e-06
 Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 216 LSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTF 275
           L L +  L G I   ++KL+ L  I L  N +   +P  L    +L  L+LS +  NG+ 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 276 PETILQVHTLQTLDLSGNSLLRGSLP 301
           PE++ Q+ +L+ L+L+GNS L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNS-LSGRVP 507

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 51.1 bits (122), Expect = 2e-06
 Identities = 85/314 (27%), Positives = 135/314 (42%), Gaps = 23/314 (7%)

Query: 304 PKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLS 363
              +  R  +   +N   +LP S+  L +L  L  +  + S     +L  L  L  LDL+
Sbjct: 43  ESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGIS-SLDGSENLLNLLPLPSLDLN 101

Query: 364 SNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHL--SNLVYVDLRNNALNGSIPR 421
            N+    I  L    NLT LDL NN             L  SNL  +DL +N +  S+P 
Sbjct: 102 LNRLRSNISELLELTNLTSLDLDNN---NITDIPPLIGLLKSNLKELDLSDNKI-ESLPS 157

Query: 422 SLFSIPMLQQLLLANNKFGGPIPEFSNASY--SALDTLDLSANRLEGPIPMSIFELKNLK 479
            L ++P L+ L L+ N     + +        S L+ LDLS N++   +P  I  L  L+
Sbjct: 158 PLRNLPNLKNLDLSFN----DLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALE 212

Query: 480 ILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKV 539
            L LS+N +   +   ++  L+NL  LELS N L        +  S + TL L++ ++  
Sbjct: 213 ELDLSNNSIIELLS--SLSNLKNLSGLELSNNKLEDLPESIGN-LSNLETLDLSNNQISS 269

Query: 540 IPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNL 599
           I +L S + L  LDLS N +S  +P          L  L      L    +   +   ++
Sbjct: 270 ISSLGSLTNLRELDLSGNSLSNALPL------IALLLLLLELLLNLLLTLKALELKLNSI 323

Query: 600 MTVLDLHSNQLQGN 613
           +   ++ SN    +
Sbjct: 324 LLNNNILSNGETSS 337

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query: 308 SLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKF 367
           +L++L LS    + +   +   L NL  LDL+  NL+   P + + L  L  LDLS N  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 51.0 bits (122), Expect = 3e-06
 Identities = 80/288 (27%), Positives = 120/288 (41%), Gaps = 42/288 (14%)

Query: 100 SLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLS 159
           SL  L++++L  +  N  EIP  L   TNL  L LS+     ++P  +  + +L  LD+S
Sbjct: 632 SLTGLRNIDLRGSK-NLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689

Query: 160 SSYSFGGPLKLEN-PNLSGLLQNLAELRALYLDGV-------NISAPGIEW-------CQ 204
                     LE  P  +G+  NL  L  L L G        +IS   I W        +
Sbjct: 690 ------RCENLEILP--TGI--NLKSLYRLNLSGCSRLKSFPDIST-NISWLDLDETAIE 738

Query: 205 ALSSLVPKLRVLSLSSCYLSG--------PIHPSLAKLQ-SLSVICLDQNDLSSPVPEFL 255
              S +    +  L  C +          P+ P +  L  SL+ + L        +P  +
Sbjct: 739 EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI 798

Query: 256 ADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLS 315
            +   L  L + +     T P T + + +L++LDLSG S LR + PD   N S   L LS
Sbjct: 799 QNLHKLEHLEIENCINLETLP-TGINLESLESLDLSGCSRLR-TFPDISTNIS--DLNLS 854

Query: 316 YANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLS 363
                 V P  I    NLS LD+  CN    +  +++KL  L  +D S
Sbjct: 855 RTGIEEV-PWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFS 901

syringae 6; Provisional. Length = 1153

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.2 bits (120), Expect = 5e-06
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 360 LDLSSNKFVGPIPSLHMSK--NLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNG 417
           L L +    G IP+  +SK  +L  ++LS N++ G I  +    +++L  +DL  N+ NG
Sbjct: 423 LGLDNQGLRGFIPN-DISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNG 480

Query: 418 SIPRSLFSIPMLQQLLLANNKFGGPIP 444
           SIP SL  +  L+ L L  N   G +P
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.7 bits (116), Expect = 2e-05
 Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 14/123 (11%)

Query: 603 LDLHSNQLQGNIPH---PPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGV 659
           L L +  L+G IP+     R+   ++ S NS   +IP  +G+  +  +   LS NS  G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVL-DLSYNSFNGS 481

Query: 660 IPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGL 719
           IPE++ +   L +L+L+ N LSG++P         LG   L   S + T +    G CG+
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAA-------LGGRLLHRASFNFTDN---AGLCGI 531

Query: 720 QTL 722
             L
Sbjct: 532 PGL 534

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 19/60 (31%), Positives = 28/60 (46%)

Query: 718 GLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSF 777
            L++LDL+ N+L      +      L+VLDL  N +    P     + SLR L L  N+ 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 695 LGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKI 753
           L  L+L  N L+      F G   L+ LDL+ N L    P++ +    L  LDL  N +
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 29/61 (47%), Positives = 36/61 (59%), Gaps = 3/61 (4%)

Query: 454 LDTLDLSANRLEGPIPMSIFE-LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNN 512
           L +LDLS NRL   IP   F+ L NLK+L LS N L  ++   A   L +L  L+LS NN
Sbjct: 2   LKSLDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 513 L 513
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 2e-04
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFA 140
           ++LS  SI G I  S  L S+  L+ L+L++N FN + IP  LG LT+L  LNL+    +
Sbjct: 447 INLSGNSIRGNIPPS--LGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNSLS 503

Query: 141 GQIPIQVSA 149
           G++P  +  
Sbjct: 504 GRVPAALGG 512

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.0 bits (104), Expect = 4e-04
 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 17/127 (13%)

Query: 186 RALYLDGVNISAPGIEWCQALSSLVPKLRVL---SLSSCYLSGPIHPSLAKLQSLSVICL 242
              ++DG+ +   G+     + + + KLR L   +LS   + G I PSL  + SL V+ L
Sbjct: 416 GKWFIDGLGLDNQGLR--GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDL 473

Query: 243 DQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPD 302
             N  +  +PE L    +L  LNL+ + L+G  P  +            G  LL  +  +
Sbjct: 474 SYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL------------GGRLLHRASFN 521

Query: 303 FPKNSSL 309
           F  N+ L
Sbjct: 522 FTDNAGL 528

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 285 LQTLDLSGNSLLRGSLPD--FPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCN 342
           L++LDLS N L    +PD  F    +L+ L LS  N + + P++   L +L  LDL+  N
Sbjct: 2   LKSLDLSNNRLT--VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 343 L 343
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 9e-04
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 379 NLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNK 438
           NL  LDLSNN L   I    ++ L NL  +DL  N L    P +   +P L+ L L+ N 
Sbjct: 1   NLKSLDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 439 F 439
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 64/264 (24%), Positives = 87/264 (32%), Gaps = 74/264 (28%)

Query: 351 LAKLTQLVYLDLSSN-------KFVGPIPSLHMSKNLTHLDLSNNALPGAISSTD----- 398
           L KL  L  L L  N       K +    +L    +L  L LS N               
Sbjct: 19  LPKLLCLQVLRLEGNTLGEEAAKALAS--ALRPQPSLKELCLSLNETGRIPRGLQSLLQG 76

Query: 399 WEHLSNLVYVDLRNNALNGSIPR---SLFSIPMLQQLLLANNKFGGPIPEFSNAS----Y 451
                 L  +DL +NAL         SL     LQ+L L NN  G               
Sbjct: 77  LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLP 136

Query: 452 SALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYN 511
            AL+ L L  NRLEG    S   L                  L A + L+    L L+ N
Sbjct: 137 PALEKLVLGRNRLEGA---SCEALAKA---------------LRANRDLK---ELNLANN 175

Query: 512 NLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDN--------QISGEI 563
            +     GD+   +    L+ A+C L+V            LDL++N         ++  +
Sbjct: 176 GI-----GDAGIRALAEGLK-ANCNLEV------------LDLNNNGLTDEGASALAETL 217

Query: 564 PNWVWEIGNGGLEYLNLSHNLLSS 587
            +         LE LNL  N L+ 
Sbjct: 218 ASLK------SLEVLNLGDNNLTD 235

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

 Score = 41.5 bits (97), Expect = 0.002
 Identities = 77/318 (24%), Positives = 117/318 (36%), Gaps = 84/318 (26%)

Query: 277 ETILQVHTLQTLDLSGNSLLRGSLPDFPKN----SSLRTLMLSYANFSGVLPDSI-GNLK 331
           E +  +  L  +DLSGN++   ++ +         +LR +  S A F+G   D +  NL 
Sbjct: 24  EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLV 82

Query: 332 NLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPS-----LHMSKNLTHLDLS 386
            L +              +L K  +L  +DLS N F    P      +  S +L HL L+
Sbjct: 83  MLLK--------------ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLN 128

Query: 387 NNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEF 446
           NN L G I+                     G I ++LF         LA NK        
Sbjct: 129 NNGL-GPIAG--------------------GRIGKALFH--------LAYNK-------- 151

Query: 447 SNASYSALDTLDLSANRLE-GPIPMSIFELK---NLKILMLSSN----KLNGTVQLAAIQ 498
             A    L+ +    NRLE G   +S   L+   NLK + +  N    +    +    + 
Sbjct: 152 KAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLF 211

Query: 499 RLRNLIRLELSYNNLTVNAS---GDSSFPS--QVRTLRLASCKLK---VIPNLKSQSKLF 550
              +L  L+L  N  T+  S    D +      +R LRL  C L    V   L+  ++ F
Sbjct: 212 YSHSLEVLDLQDNTFTLEGSRYLAD-ALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKF 270

Query: 551 N-----LDLSDNQISGEI 563
                 L    N+  G I
Sbjct: 271 VPNLMPLPGDYNERRGGI 288

Length = 388

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 21/60 (35%), Positives = 28/60 (46%)

Query: 887 SLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNL 946
           +L  L+ S N            L  L+ LDLS N+L+   P   + L  L  L+LS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 551 NLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQL 610
           +LDLS+N+++  IP      G   L+ L+LS N L+S+  P + S L  +  LDL  N L
Sbjct: 4   SLDLSNNRLT-VIP-DGAFKGLPNLKVLDLSGNNLTSI-SPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1042
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.67
PLN03150	623	hypothetical protein; Provisional	99.63
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.56
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.54
PLN03150	623	hypothetical protein; Provisional	99.44
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.14
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.09
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.06
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.05
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.97
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.97
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.95
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.92
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.82
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.78
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.77
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.7
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.69
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.68
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.67
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.64
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.58
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.57
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.56
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.47
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.37
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.29
KOG4341	483	consensus F-box protein containing LRR [General fu	98.28
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.25
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.18
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.17
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.99
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.98
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.95
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.87
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.68
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.67
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.66
KOG4341	483	consensus F-box protein containing LRR [General fu	97.62
PRK15386	426	type III secretion protein GogB; Provisional	97.5
PRK15386	426	type III secretion protein GogB; Provisional	97.46
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.42
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.3
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.19
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.89
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.79
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.69
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.41
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.97
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.79
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.62
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.5
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.14
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.86
KOG4308	478	consensus LRR-containing protein [Function unknown	94.45
KOG4308	478	consensus LRR-containing protein [Function unknown	93.94
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.39
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.58
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	86.87
smart00370	26	LRR Leucine-rich repeats, outliers.	85.79
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.79
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.0
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	84.79
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	81.72
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	81.32
smart00370	26	LRR Leucine-rich repeats, outliers.	81.32

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.6e-70  Score=703.59  Aligned_cols=584  Identities=36%  Similarity=0.600  Sum_probs=376.9

Q ss_pred             cHHHHHHHHHHHhcCCCCCCccccccCCCCCCCCcccCceeeCCCCCEEEEECCCCCCccccCCCCCcccCCCCCeeeCC
Q 001624           31 QSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSTDCCTWCGVDCDEAGRVIGLDLSEESISGRIDNSSPLLSLKYLQSLNLA  110 (1042)
Q Consensus        31 ~~~~~~aLl~~k~~~~~~~~~~~~l~sW~~~~~~c~w~gv~C~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls  110 (1042)
                      .++|++||++||+++.+ |.  +.+++|+.+.+||.|+||+|++.++|+.|||+++.++|.+  ++.+..+++|++|+|+
T Consensus        27 ~~~~~~~l~~~~~~~~~-~~--~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~--~~~~~~l~~L~~L~Ls  101 (968)
T PLN00113         27 HAEELELLLSFKSSIND-PL--KYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKI--SSAIFRLPYIQTINLS  101 (968)
T ss_pred             CHHHHHHHHHHHHhCCC-Cc--ccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccC--ChHHhCCCCCCEEECC
Confidence            56899999999999964 53  4789998788999999999987789999999999999887  6677888888888888


Q ss_pred             CCCCCCCCCCCccC-CCCCCCEEECCCCCCCCCCchhhhcCCCCcEEeCCCCCCCCCCcccCCCChHHHHhcCccccccc
Q 001624          111 FNMFNATEIPSGLG-NLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALY  189 (1042)
Q Consensus       111 ~n~~~~~~lp~~l~-~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~~l~~l~~L~~L~  189 (1042)
                      +|.+.+. +|..+. .+++|++|+|++|.+++.+|.  +.+                                       
T Consensus       102 ~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l---------------------------------------  139 (968)
T PLN00113        102 NNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSI---------------------------------------  139 (968)
T ss_pred             CCccCCc-CChHHhccCCCCCEEECcCCccccccCc--ccc---------------------------------------
Confidence            8877665 666543 777777777777777766663  222                                       


Q ss_pred             CCCccCCCcchhhHHHhhccCCCccEEEccCCcCCCCCCccccCCCCCCEEECCCCCCCCCchHhhhCCCCCCEEEccCC
Q 001624          190 LDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSS  269 (1042)
Q Consensus       190 L~~~~l~~~~~~~l~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n  269 (1042)
                                           ++|++|++++|.+++..|..++++++|++|++++|.+.+.+|..++++++|++|++++|
T Consensus       140 ---------------------~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  198 (968)
T PLN00113        140 ---------------------PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN  198 (968)
T ss_pred             ---------------------CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC
Confidence                                 34444455555555555666666666666666666666666666666666666666666


Q ss_pred             CCCCCchhhhhcCCCCCEEECCCCCCCCCCCCCCCCCCCCcEEEcCCccccccCCccccCCCCCCEEEccCCCCCCCcch
Q 001624          270 GLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPT  349 (1042)
Q Consensus       270 ~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~  349 (1042)
                      .+.+.+|..++++++|++|++++|.                        +++.+|..++++++|++|++++|.+++.+|.
T Consensus       199 ~l~~~~p~~l~~l~~L~~L~L~~n~------------------------l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  254 (968)
T PLN00113        199 QLVGQIPRELGQMKSLKWIYLGYNN------------------------LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS  254 (968)
T ss_pred             CCcCcCChHHcCcCCccEEECcCCc------------------------cCCcCChhHhcCCCCCEEECcCceeccccCh
Confidence            6665555555555555544444432                        3344555555555566666655555555555


Q ss_pred             hccCCCCCCEEEccCCcccCCCCccCCCCCccEEEccCCCCCCCCCcccccCCCCccEEcccCcccCCcCCccccCCCCC
Q 001624          350 SLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPML  429 (1042)
Q Consensus       350 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  429 (1042)
                      .++++++|++|++++|.+.+.                       +|.. +.++++|++|++++|.+.+.+|..+..+++|
T Consensus       255 ~l~~l~~L~~L~L~~n~l~~~-----------------------~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  310 (968)
T PLN00113        255 SLGNLKNLQYLFLYQNKLSGP-----------------------IPPS-IFSLQKLISLDLSDNSLSGEIPELVIQLQNL  310 (968)
T ss_pred             hHhCCCCCCEEECcCCeeecc-----------------------Cchh-HhhccCcCEEECcCCeeccCCChhHcCCCCC
Confidence            555555555555555444332                       2222 3344444444444444444333333333333


Q ss_pred             cEEEccCCCCCCCCCcccccccCcCCeeecccccCCCCCCcchhccCcCCEEEccCCccccccchHHHHhcccCCeEEcc
Q 001624          430 QQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELS  509 (1042)
Q Consensus       430 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls  509 (1042)
                      +.|++++|.+                         .+..|..+..+++|                               
T Consensus       311 ~~L~l~~n~~-------------------------~~~~~~~~~~l~~L-------------------------------  334 (968)
T PLN00113        311 EILHLFSNNF-------------------------TGKIPVALTSLPRL-------------------------------  334 (968)
T ss_pred             cEEECCCCcc-------------------------CCcCChhHhcCCCC-------------------------------
Confidence            3333322222                         22222222222233                               


Q ss_pred             CceeeeecCCCCCCcccccEEEeCCCCCCCCCCCCCCCcccEEECCCCCCCCCcChhHhhhcCCCccEEEccCCccccCC
Q 001624          510 YNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQ  589 (1042)
Q Consensus       510 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~lp~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~  589 (1042)
                                                              +.|++++|.+.+.+|..+...                   
T Consensus       335 ----------------------------------------~~L~L~~n~l~~~~p~~l~~~-------------------  355 (968)
T PLN00113        335 ----------------------------------------QVLQLWSNKFSGEIPKNLGKH-------------------  355 (968)
T ss_pred             ----------------------------------------CEEECcCCCCcCcCChHHhCC-------------------
Confidence                                                    333333333333333322110                   


Q ss_pred             CCcccccCCCceEEecCCCcccccCCCCCCCCcEEeccCCccccCCCCCcccccccceeeecccCccccccchhhhccCC
Q 001624          590 RPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKY  669 (1042)
Q Consensus       590 ~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~l~~L~l~~n~l~~~~p~~~~~l~~  669 (1042)
                              ++|+.|++                                              ++|.+++.+|..++.+++
T Consensus       356 --------~~L~~L~L----------------------------------------------s~n~l~~~~p~~~~~~~~  381 (968)
T PLN00113        356 --------NNLTVLDL----------------------------------------------STNNLTGEIPEGLCSSGN  381 (968)
T ss_pred             --------CCCcEEEC----------------------------------------------CCCeeEeeCChhHhCcCC
Confidence                    01222222                                              222222333344444555


Q ss_pred             CcEEEccCCcCccccChhHhhccCcccEEECCCCccccccCCCCCCCCCCcEEeCCCCcccccCCccccCCCCCcEEECC
Q 001624          670 LLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLG  749 (1042)
Q Consensus       670 L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  749 (1042)
                      |+.|++++|++.+.+|..+..+ ++|+.|                        ++++|++++.+|..|.++++|+.|+++
T Consensus       382 L~~L~l~~n~l~~~~p~~~~~~-~~L~~L------------------------~L~~n~l~~~~p~~~~~l~~L~~L~Ls  436 (968)
T PLN00113        382 LFKLILFSNSLEGEIPKSLGAC-RSLRRV------------------------RLQDNSFSGELPSEFTKLPLVYFLDIS  436 (968)
T ss_pred             CCEEECcCCEecccCCHHHhCC-CCCCEE------------------------ECcCCEeeeECChhHhcCCCCCEEECc
Confidence            6666666666666666555443 444444                        455555544455555555555555555


Q ss_pred             CCccccccChhhhcCCCCcEEEecCceeeeeccCCCCCCCCCcccEEeccCCCCCCCCChhhhhhhhhhccccccccccc
Q 001624          750 NNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNF  829 (1042)
Q Consensus       750 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~  829 (1042)
                      +|++++.+|.++..+++|++|++++|++.|.+  |..+ ..++|+.||+++|+++|.+|..+                  
T Consensus       437 ~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~--p~~~-~~~~L~~L~ls~n~l~~~~~~~~------------------  495 (968)
T PLN00113        437 NNNLQGRINSRKWDMPSLQMLSLARNKFFGGL--PDSF-GSKRLENLDLSRNQFSGAVPRKL------------------  495 (968)
T ss_pred             CCcccCccChhhccCCCCcEEECcCceeeeec--Cccc-ccccceEEECcCCccCCccChhh------------------
Confidence            55555555555555555555555555555544  2222 34677788888888887777432                  


Q ss_pred             ccceeeeccccceeeeeEEEecCchhhhhhhcccccEEEccCCcccccCcccccccCCCcEEECCCCcccccCCccccCC
Q 001624          830 KDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNL  909 (1042)
Q Consensus       830 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~l~~LdLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l  909 (1042)
                                                   ..++.|+.|||++|+++|.+|.+++++++|+.|+|++|.++|.+|..++++
T Consensus       496 -----------------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  546 (968)
T PLN00113        496 -----------------------------GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM  546 (968)
T ss_pred             -----------------------------hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCc
Confidence                                         145678899999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEccCCcccccccccccCCCcCCeeeccCCcccccCCCCCcccccCCcccCCCCCCCCCC
Q 001624          910 QQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAP  974 (1042)
Q Consensus       910 ~~L~~LdLs~N~l~g~ip~~l~~L~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lcg~~  974 (1042)
                      ++|+.|||++|+++|.+|..+.++++|++|++++|+++|.||...++.++...+|.||+++||.+
T Consensus       547 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             ccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999865

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.2e-55  Score=562.24  Aligned_cols=512  Identities=35%  Similarity=0.515  Sum_probs=390.1

Q ss_pred             CCcEEEcCCccccccCCccccCCCCCCEEEccCCCCCCCcchhcc-CCCCCCEEEccCCcccCCCCccCCCCCccEEEcc
Q 001624          308 SLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLA-KLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLS  386 (1042)
Q Consensus       308 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~  386 (1042)
                      +++.|++++|.+++.++..+..+++|+.|++++|.+.+.+|..+. .+++|++|++++|.+++.+|. ...++|++|+++
T Consensus        70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls  148 (968)
T PLN00113         70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLS  148 (968)
T ss_pred             cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEECc
Confidence            566777777777777777888888888888888888877776554 788888888888888776664 234677777777


Q ss_pred             CCCCCCCCCcccccCCCCccEEcccCcccCCcCCccccCCCCCcEEEccCCCCCCCCCcccccccCcCCeeecccccCCC
Q 001624          387 NNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEG  466 (1042)
Q Consensus       387 ~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~  466 (1042)
                      +|.+.+.+|.. ++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|... ..+++|+.|++++|.+.+
T Consensus       149 ~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~  226 (968)
T PLN00113        149 NNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLSG  226 (968)
T ss_pred             CCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCCccEEECcCCccCC
Confidence            77777666665 7777777777777777777777777777777777777766665444322 234555555555555555


Q ss_pred             CCCcchhccCcCCEEEccCCccccccchHHHHhcccCCeEEccCceeeeecCCCCCCcccccEEEeCCCCCCCCCCCCCC
Q 001624          467 PIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQ  546 (1042)
Q Consensus       467 ~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~lp~l~~~  546 (1042)
                      .+|..+.++++|++|++++|.+.+.+| ..                                              +..+
T Consensus       227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~----------------------------------------------l~~l  259 (968)
T PLN00113        227 EIPYEIGGLTSLNHLDLVYNNLTGPIP-SS----------------------------------------------LGNL  259 (968)
T ss_pred             cCChhHhcCCCCCEEECcCceeccccC-hh----------------------------------------------HhCC
Confidence            555555555555555555555544333 22                                              3344


Q ss_pred             CcccEEECCCCCCCCCcChhHhhhcCCCccEEEccCCccccCCCCcccccCCCceEEecCCCcccccCCCCCCCCcEEec
Q 001624          547 SKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDY  626 (1042)
Q Consensus       547 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~l  626 (1042)
                      ++|++|++++|.+.+.+|..+..+.                           +|+.|++++|.+.+.+|.          
T Consensus       260 ~~L~~L~L~~n~l~~~~p~~l~~l~---------------------------~L~~L~Ls~n~l~~~~p~----------  302 (968)
T PLN00113        260 KNLQYLFLYQNKLSGPIPPSIFSLQ---------------------------KLISLDLSDNSLSGEIPE----------  302 (968)
T ss_pred             CCCCEEECcCCeeeccCchhHhhcc---------------------------CcCEEECcCCeeccCCCh----------
Confidence            4555555555555555554443221                           344444444433333221          


Q ss_pred             cCCccccCCCCCcccccccceeeecccCccccccchhhhccCCCcEEEccCCcCccccChhHhhccCcccEEECCCCccc
Q 001624          627 SNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLS  706 (1042)
Q Consensus       627 s~n~~~~~~p~~~~~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~  706 (1042)
                                 .+. .+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|..+..+ ++|+.|++++|+++
T Consensus       303 -----------~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~-~~L~~L~Ls~n~l~  369 (968)
T PLN00113        303 -----------LVI-QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH-NNLTVLDLSTNNLT  369 (968)
T ss_pred             -----------hHc-CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC-CCCcEEECCCCeeE
Confidence                       111 24455666666666677777788888999999999999999999888876 88999999999999


Q ss_pred             cccCCCCCCCCCCcEEeCCCCcccccCCccccCCCCCcEEECCCCccccccChhhhcCCCCcEEEecCceeeeeccCCCC
Q 001624          707 GTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCREN  786 (1042)
Q Consensus       707 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i~~~~~  786 (1042)
                      +.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..+.+++.|+.|++++|++.|.+  +..
T Consensus       370 ~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--~~~  447 (968)
T PLN00113        370 GEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI--NSR  447 (968)
T ss_pred             eeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCcc--Chh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999987  777


Q ss_pred             CCCCCcccEEeccCCCCCCCCChhhhhhhhhhcccccccccccccceeeeccccceeeeeEEEecCchhhhhhhcccccE
Q 001624          787 DDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTS  866 (1042)
Q Consensus       787 ~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~l~~  866 (1042)
                      +..+++|+.|++++|++.|.+|...                                                ..+.|+.
T Consensus       448 ~~~l~~L~~L~L~~n~~~~~~p~~~------------------------------------------------~~~~L~~  479 (968)
T PLN00113        448 KWDMPSLQMLSLARNKFFGGLPDSF------------------------------------------------GSKRLEN  479 (968)
T ss_pred             hccCCCCcEEECcCceeeeecCccc------------------------------------------------ccccceE
Confidence            7889999999999999999888421                                                1346889


Q ss_pred             EEccCCcccccCcccccccCCCcEEECCCCcccccCCccccCCCCCCeEEccCCcccccccccccCCCcCCeeeccCCcc
Q 001624          867 IDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNL  946 (1042)
Q Consensus       867 LdLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~L~~L~~L~ls~N~l  946 (1042)
                      ||+++|+++|.+|..+++++.|+.|+|++|+++|.+|+.++++++|++|||++|+++|.+|..+++++.|+.||+++|++
T Consensus       480 L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  559 (968)
T PLN00113        480 LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL  559 (968)
T ss_pred             EECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCc-ccccCCcccCCCCC
Q 001624          947 EGNIPVSTQ-LQSFSPTSFEGNEG  969 (1042)
Q Consensus       947 ~g~ip~~~~-~~~~~~~~~~gn~~  969 (1042)
                      +|.+|.... +.......+.+|+.
T Consensus       560 ~~~~p~~l~~l~~L~~l~ls~N~l  583 (968)
T PLN00113        560 SGEIPKNLGNVESLVQVNISHNHL  583 (968)
T ss_pred             cccCChhHhcCcccCEEeccCCcc
Confidence            999997532 22223333445543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-35  Score=317.12  Aligned_cols=367  Identities=26%  Similarity=0.308  Sum_probs=228.8

Q ss_pred             CCCEEEccCCCCCCCcchhccCCCCCCEEEccCCcccCCCCccCCC-CCccEEEccCCCCCCCCCcccccCCCCccEEcc
Q 001624          332 NLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMS-KNLTHLDLSNNALPGAISSTDWEHLSNLVYVDL  410 (1042)
Q Consensus       332 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L  410 (1042)
                      .-+.||+++|.+....+..|.++++|+++++.+|.++ .+|.+... .+|+.|+|.+|.++ .+..+.+..++.|+.|||
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDL  156 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhh
Confidence            3456888888888888888888999999999888887 46666555 56888888888887 455555888888888888


Q ss_pred             cCcccCCcCCccccCCCCCcEEEccCCCCCCCCCcccccccCcCCeeecccccCCCCCCcchhccCcCCEEEccCCcccc
Q 001624          411 RNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNG  490 (1042)
Q Consensus       411 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  490 (1042)
                      +.|.++..--.++..-.++++|+|++|.|+                         ..-...|..+.+|..|.|+.|+++ 
T Consensus       157 SrN~is~i~~~sfp~~~ni~~L~La~N~It-------------------------~l~~~~F~~lnsL~tlkLsrNrit-  210 (873)
T KOG4194|consen  157 SRNLISEIPKPSFPAKVNIKKLNLASNRIT-------------------------TLETGHFDSLNSLLTLKLSRNRIT-  210 (873)
T ss_pred             hhchhhcccCCCCCCCCCceEEeecccccc-------------------------ccccccccccchheeeecccCccc-
Confidence            888887433334444455666666666555                         333344555555666666666665 


Q ss_pred             ccchHHHHhcccCCeEEccCceeeeecCCCCCCcccccEEEeCCCCCCCCCC--CCCCCcccEEECCCCCCCCCcChhHh
Q 001624          491 TVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEIPNWVW  568 (1042)
Q Consensus       491 ~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~lp~--l~~~~~L~~L~Ls~N~l~~~~p~~~~  568 (1042)
                      .+|...|.++++|+.|+|..|+|..+....|...++|+.|.+..|++..+.+  |..+.++++|+|+.|+++..-..|++
T Consensus       211 tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf  290 (873)
T KOG4194|consen  211 TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF  290 (873)
T ss_pred             ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc
Confidence            5565666666666666666666665555555556666666666666665554  66666666666666666655445544


Q ss_pred             hhcCCCccEEEccCCccccCCCCcccccCCCceEEecCCCcccccCCCCCCCCcEEeccCCccccCCCCCccccccccee
Q 001624          569 EIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIF  648 (1042)
Q Consensus       569 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~l~~  648 (1042)
                      .+.  +|+.|++|+|.|..+...                                               -+..+++|++
T Consensus       291 gLt--~L~~L~lS~NaI~rih~d-----------------------------------------------~WsftqkL~~  321 (873)
T KOG4194|consen  291 GLT--SLEQLDLSYNAIQRIHID-----------------------------------------------SWSFTQKLKE  321 (873)
T ss_pred             ccc--hhhhhccchhhhheeecc-----------------------------------------------hhhhccccee
Confidence            433  244444444444433211                                               1112344445


Q ss_pred             eecccCccccccchhhhccCCCcEEEccCCcCccccChhHhhccCcccEEECCCCccccccCC---CCCCCCCCcEEeCC
Q 001624          649 FSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSV---TFPGNCGLQTLDLN  725 (1042)
Q Consensus       649 L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~Ls  725 (1042)
                      |+|++|+|+...+++|..+..|++|.|++|++. .+.+..+.+.++|++|||++|.+++.+.+   .|.++++|+.|+|.
T Consensus       322 LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~  400 (873)
T KOG4194|consen  322 LDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLT  400 (873)
T ss_pred             EeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeec
Confidence            555555555555556666666666666666665 44444444446666666666666655543   35666677777777


Q ss_pred             CCcccccCCccccCCCCCcEEECCCCccccccChhhhcCCCCcEEEecCcee
Q 001624          726 ENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSF  777 (1042)
Q Consensus       726 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l  777 (1042)
                      +|++..+...+|.++.+|+.|||.+|.|..+-|..|..+ .|+.|.+..-.|
T Consensus       401 gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  401 GNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF  451 (873)
T ss_pred             CceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence            777765555667777777777777777766666666666 666666655443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.9e-38  Score=326.60  Aligned_cols=491  Identities=29%  Similarity=0.387  Sum_probs=270.9

Q ss_pred             CCccEEEccCCcCCCCCCccccCCCCCCEEECCCCCCCCCchHhhhCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEC
Q 001624          211 PKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDL  290 (1042)
Q Consensus       211 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  290 (1042)
                      ..+..+.+++|.+.. +.+.+.++..|.+|++.+|++.. .|.+++.+..++.++.++|++. .+|+.+..+.+|+.++.
T Consensus        45 v~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC  121 (565)
T ss_pred             cchhhhhhccCchhh-ccHhhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence            467788888888774 34567888888899999888875 5777888888888898888887 78888888888888888


Q ss_pred             CCCCCCCCCCCCCCCCCCCcEEEcCCccccccCCccccCCCCCCEEEccCCCCCCCcchhccCCCCCCEEEccCCcccCC
Q 001624          291 SGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGP  370 (1042)
Q Consensus       291 s~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  370 (1042)
                      ++|.+.. -.+.+..+..++.++..+|+++ ..|+.+.++.+|..+++.+|++... |+..-+++.|++||...|.+...
T Consensus       122 s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l-~~~~i~m~~L~~ld~~~N~L~tl  198 (565)
T KOG0472|consen  122 SSNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKAL-PENHIAMKRLKHLDCNSNLLETL  198 (565)
T ss_pred             cccceee-cCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhC-CHHHHHHHHHHhcccchhhhhcC
Confidence            8886432 2334555666666666666666 4455666666666666666666633 33333366666666666666555


Q ss_pred             CCccCCCCCccEEEccCCCCCCCCCcccccCCCCccEEcccCcccCCcCCcccc-CCCCCcEEEccCCCCCCCCCccccc
Q 001624          371 IPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLF-SIPMLQQLLLANNKFGGPIPEFSNA  449 (1042)
Q Consensus       371 ~~~~~~~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~  449 (1042)
                      .|...+..+|+.|++..|++. .+| + |..|..|+++.++.|++. .+|.... .++++..||+.+|++.. .|.... 
T Consensus       199 P~~lg~l~~L~~LyL~~Nki~-~lP-e-f~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pde~c-  272 (565)
T KOG0472|consen  199 PPELGGLESLELLYLRRNKIR-FLP-E-FPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEIC-  272 (565)
T ss_pred             ChhhcchhhhHHHHhhhcccc-cCC-C-CCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-CchHHH-
Confidence            555555566666666666665 445 2 666666666666666665 4454444 56666666666666652 332221 


Q ss_pred             ccCcCCeeecccccCCCCCCcchhccCcCCEEEccCCccccccchHHHHh-----cccCCeEEccCceeeeecCCCCCCc
Q 001624          450 SYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQR-----LRNLIRLELSYNNLTVNASGDSSFP  524 (1042)
Q Consensus       450 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~-----l~~L~~L~Ls~n~l~~~~~~~~~~~  524 (1042)
                      .+.+|++||+|+|.++ .+|.+++++ .|+.|-+.+|.+. ++..+.+.+     ++.|+. .+..-.++.-..+...-+
T Consensus       273 lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs-~~~~dglS~se~~~e~~~  348 (565)
T KOG0472|consen  273 LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRS-KIKDDGLSQSEGGTETAM  348 (565)
T ss_pred             HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHH-hhccCCCCCCcccccccC
Confidence            2455666666666666 355556666 5666666666654 222221111     111111 000000000000000000


Q ss_pred             ccccEEEeCCCCCCCCCCCCCCCcccEEECCCCCCCCCcChhHhhhcCCCccEEEccCCccccCCCCcccccCCCceEEe
Q 001624          525 SQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLD  604 (1042)
Q Consensus       525 ~~L~~L~L~~n~l~~lp~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~  604 (1042)
                            +.   .-..+|........+.|+++.-+++ .+|...|......                        -.+..+
T Consensus       349 ------t~---~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~------------------------~Vt~Vn  394 (565)
T KOG0472|consen  349 ------TL---PSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSE------------------------IVTSVN  394 (565)
T ss_pred             ------CC---CCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhc------------------------ceEEEe
Confidence                  00   0002233444556677777777777 6677666543211                        123333


Q ss_pred             cCCCcccccCCCCCCCCcEEeccCCccccCCCCCcccccccceeeecccCccccccchhhhccCCCcEEEccCCcCcccc
Q 001624          605 LHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKM  684 (1042)
Q Consensus       605 l~~N~l~~~~p~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i  684 (1042)
                      ++.|++.                      .+|..+...-...+.+.+++|.+ +.+|..++.+++|..|++++|-+. .+
T Consensus       395 fskNqL~----------------------elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~L  450 (565)
T KOG0472|consen  395 FSKNQLC----------------------ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DL  450 (565)
T ss_pred             cccchHh----------------------hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hc
Confidence            3333332                      23333222111122233333332 355566666666666666666665 56


Q ss_pred             ChhHhhccCcccEEECCCCccccccCCCCCCCCCCcEEeCCCCcccccCCccccCCCCCcEEECCCCccccccChhhhcC
Q 001624          685 PTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNI  764 (1042)
Q Consensus       685 p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  764 (1042)
                      |..++.+ ..|+.||++.|++. ..|.....+..++.+-.++|++....|..+.++.+|.+|||.+|.+. .+|..++++
T Consensus       451 P~e~~~l-v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnm  527 (565)
T KOG0472|consen  451 PEEMGSL-VRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNM  527 (565)
T ss_pred             chhhhhh-hhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccc
Confidence            6666554 34555555555554 33444444444455555555555444444555555555555555553 233345555


Q ss_pred             CCCcEEEecCceee
Q 001624          765 SSLRVLVLRSNSFY  778 (1042)
Q Consensus       765 ~~L~~L~L~~N~l~  778 (1042)
                      ++|++|++.+|+|.
T Consensus       528 tnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  528 TNLRHLELDGNPFR  541 (565)
T ss_pred             cceeEEEecCCccC
Confidence            55555555555443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-35  Score=316.01  Aligned_cols=364  Identities=26%  Similarity=0.307  Sum_probs=323.9

Q ss_pred             CCccEEEccCCcCCCCCCccccCCCCCCEEECCCCCCCCCchHhhhCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEC
Q 001624          211 PKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDL  290 (1042)
Q Consensus       211 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  290 (1042)
                      +.-+.|++++|.+....+..|.++++|+.+++..|.++. +|.......+|+.|+|.+|.+...-.+++..++.|++|||
T Consensus        78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~-IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTR-IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL  156 (873)
T ss_pred             cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhh-cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence            577889999999999999999999999999999999885 7776666777999999999999888889999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCcEEEcCCccccccCCccccCCCCCCEEEccCCCCCCCcchhccCCCCCCEEEccCCcccCC
Q 001624          291 SGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGP  370 (1042)
Q Consensus       291 s~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  370 (1042)
                      |.|.+.....+.|+.-.++++|+|++|+|+..-...|.++.+|..|.|++|+++...+..|.++++|+.|+|..|++.-.
T Consensus       157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence            99999999999999999999999999999998889999999999999999999987778999999999999999998643


Q ss_pred             -CCccCCCCCccEEEccCCCCCCCCCcccccCCCCccEEcccCcccCCcCCccccCCCCCcEEEccCCCCCCCCCccccc
Q 001624          371 -IPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNA  449 (1042)
Q Consensus       371 -~~~~~~~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  449 (1042)
                       .-.+.+.++|+.|.+..|.+. .+.+..|..+.++++|+|+.|+++..-..++.++++|+.|+++.|.|.. +....+.
T Consensus       237 e~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r-ih~d~Ws  314 (873)
T KOG4194|consen  237 EGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR-IHIDSWS  314 (873)
T ss_pred             hhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhe-eecchhh
Confidence             234556699999999999997 6667779999999999999999998778899999999999999999884 4444455


Q ss_pred             ccCcCCeeecccccCCCCCCcchhccCcCCEEEccCCccccccchHHHHhcccCCeEEccCceeeeecCC---CCCCccc
Q 001624          450 SYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASG---DSSFPSQ  526 (1042)
Q Consensus       450 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~~~~  526 (1042)
                      .+++|++|+|++|+++...+..|..+..|++|+|++|.+. .+...+|..+++|++|||+.|.++.....   .+..+++
T Consensus       315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~  393 (873)
T KOG4194|consen  315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPS  393 (873)
T ss_pred             hcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchh
Confidence            6899999999999999988999999999999999999997 78889999999999999999999854433   3777889


Q ss_pred             ccEEEeCCCCCCCCCC--CCCCCcccEEECCCCCCCCCcChhHhhhcCCCccEEEcc
Q 001624          527 VRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLS  581 (1042)
Q Consensus       527 L~~L~L~~n~l~~lp~--l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls  581 (1042)
                      |+.|.+.+|+++.||.  +..+..|++|||.+|.|...-|+.+...   .|+.|.+.
T Consensus       394 LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m---~Lk~Lv~n  447 (873)
T KOG4194|consen  394 LRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM---ELKELVMN  447 (873)
T ss_pred             hhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc---hhhhhhhc
Confidence            9999999999999998  9999999999999999998777776543   36666553

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=5.5e-39  Score=330.53  Aligned_cols=272  Identities=26%  Similarity=0.369  Sum_probs=184.6

Q ss_pred             CCCCCCCCcEEEcCCccccccCCccccCCCCCCEEEccCCCCCCCcchhccCCCCCCEEEccCCcccCCCCccCCCCCcc
Q 001624          302 DFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLT  381 (1042)
Q Consensus       302 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~  381 (1042)
                      .+..-..++.+.+++|.+.. +.+.+.++..|.+|++.+|++. ..|.+++.+..++.++.++|.+....+......++.
T Consensus        40 ~wW~qv~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~  117 (565)
T KOG0472|consen   40 NWWEQVDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLV  117 (565)
T ss_pred             hhhhhcchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhh
Confidence            33344455566666665552 3334566666666677666666 456666666666666777766665554455556666


Q ss_pred             EEEccCCCCCCCCCcccccCCCCccEEcccCcccCCcCCccccCCCCCcEEEccCCCCCCCCCcccccccCcCCeeeccc
Q 001624          382 HLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSA  461 (1042)
Q Consensus       382 ~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~  461 (1042)
                      .++++.|.+. .++++ ++.+-.|+.++..+|+++ ..|..++++.++..+++.+|++....|....  +..|+++|...
T Consensus       118 ~l~~s~n~~~-el~~~-i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~--m~~L~~ld~~~  192 (565)
T KOG0472|consen  118 KLDCSSNELK-ELPDS-IGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA--MKRLKHLDCNS  192 (565)
T ss_pred             hhhcccccee-ecCch-HHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH--HHHHHhcccch
Confidence            6666666665 44444 666777777777777776 5666777777777777777777644443332  66777777777


Q ss_pred             ccCCCCCCcchhccCcCCEEEccCCccccccchHHHHhcccCCeEEccCceeeeecCCCCCCcccccEEEeCCCCCCCCC
Q 001624          462 NRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIP  541 (1042)
Q Consensus       462 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~lp  541 (1042)
                      |.++ .+|..++.+.+|+.|++..|++. .+|  .|.+|..|++++++.|++..++.+.....+++..|++++|+++++|
T Consensus       193 N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~P  268 (565)
T KOG0472|consen  193 NLLE-TLPPELGGLESLELLYLRRNKIR-FLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVP  268 (565)
T ss_pred             hhhh-cCChhhcchhhhHHHHhhhcccc-cCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCc
Confidence            7665 67778888888888888888886 555  5778888888888888887777766666667778888888888888


Q ss_pred             C-CCCCCcccEEECCCCCCCCCcChhHhhhcCCCccEEEccCCccccC
Q 001624          542 N-LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSL  588 (1042)
Q Consensus       542 ~-l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~  588 (1042)
                      . +.-+.+|.+||+|+|.|+ .+|-.++.+   .|+.|-+.+|.+..+
T Consensus       269 de~clLrsL~rLDlSNN~is-~Lp~sLgnl---hL~~L~leGNPlrTi  312 (565)
T KOG0472|consen  269 DEICLLRSLERLDLSNNDIS-SLPYSLGNL---HLKFLALEGNPLRTI  312 (565)
T ss_pred             hHHHHhhhhhhhcccCCccc-cCCcccccc---eeeehhhcCCchHHH
Confidence            7 666777888888888887 455555544   366777777776654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=1e-34  Score=328.79  Aligned_cols=506  Identities=28%  Similarity=0.296  Sum_probs=338.3

Q ss_pred             EccCCcCCCCCCccccCCCCCCEEECCCCCCCCCchHhhhCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEECCCCCCC
Q 001624          217 SLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLL  296 (1042)
Q Consensus       217 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~  296 (1042)
                      |.+.+.+. .+|..+..-..++.|+++.|.+....-+...+.-+|+.|++++|.+. .+|..+..+.+|+.|+++.|.+.
T Consensus         4 d~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~   81 (1081)
T KOG0618|consen    4 DASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR   81 (1081)
T ss_pred             ccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh
Confidence            33444443 34444444444666666666554433344444555777777777765 66777777777777777777654


Q ss_pred             CCCCCCCCCCCCCcEEEcCCccccccCCccccCCCCCCEEEccCCCCCCCcchhccCCCCCCEEEccCCcccCCCCccCC
Q 001624          297 RGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHM  376 (1042)
Q Consensus       297 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  376 (1042)
                      ..+ .....+.+|+++.|..|.+. ..|.++..+++|+.|+++.|.+. .+|..+..++.++.+..++|......+.   
T Consensus        82 ~vp-~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~---  155 (1081)
T KOG0618|consen   82 SVP-SSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ---  155 (1081)
T ss_pred             hCc-hhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc---
Confidence            433 34455677777777777666 67778888888888888888887 6777777888888888888832222211   


Q ss_pred             CCCccEEEccCCCCCCCCCcccccCCCCccEEcccCcccCCcCCccccCCCCCcEEEccCCCCCCCCCcccccccCcCCe
Q 001624          377 SKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDT  456 (1042)
Q Consensus       377 ~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~  456 (1042)
                       ..++.+++..|.+.+.++.+ ..+++.  .++|++|.+.   -..+..++.|+.+....|++...     ...-++|+.
T Consensus       156 -~~ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l-----~~~g~~l~~  223 (1081)
T KOG0618|consen  156 -TSIKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSEL-----EISGPSLTA  223 (1081)
T ss_pred             -ccchhhhhhhhhcccchhcc-hhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceE-----EecCcchhe
Confidence             23777777777777766655 555555  6888888775   23456677778888777776521     113467888


Q ss_pred             eecccccCCCCCCcchhccCcCCEEEccCCccccccchHHHHhcccCCeEEccCceeeeecCCCCCCcccccEEEeCCCC
Q 001624          457 LDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCK  536 (1042)
Q Consensus       457 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~  536 (1042)
                      |+.++|.++...+..  --.+|+++++++|+++ .+| .++..+.+|+.++..+|+++.++...+. ..+|+.|.+..|.
T Consensus       224 L~a~~n~l~~~~~~p--~p~nl~~~dis~n~l~-~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~-~~~L~~l~~~~ne  298 (1081)
T KOG0618|consen  224 LYADHNPLTTLDVHP--VPLNLQYLDISHNNLS-NLP-EWIGACANLEALNANHNRLVALPLRISR-ITSLVSLSAAYNE  298 (1081)
T ss_pred             eeeccCcceeecccc--ccccceeeecchhhhh-cch-HHHHhcccceEecccchhHHhhHHHHhh-hhhHHHHHhhhhh
Confidence            888888877433322  2247888888888887 566 7788888888888888888655544333 3478888999999


Q ss_pred             CCCCCC-CCCCCcccEEECCCCCCCCCcChhHhhhcCCCccEEEccCCccccCCCCcccccCCCceEEecCCCcccccCC
Q 001624          537 LKVIPN-LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIP  615 (1042)
Q Consensus       537 l~~lp~-l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p  615 (1042)
                      ++.+|. +...+.|++|||..|++. .+|..+......++..|+.+.|++...+..                        
T Consensus       299 l~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~------------------------  353 (1081)
T KOG0618|consen  299 LEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSY------------------------  353 (1081)
T ss_pred             hhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccc------------------------
Confidence            999988 666899999999999998 666665554444466666666665554311                        


Q ss_pred             CCCCCCcEEeccCCccccCCCCCcccccccceeeecccCccccccchhhhccCCCcEEEccCCcCccccChhHhhccCcc
Q 001624          616 HPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDIL  695 (1042)
Q Consensus       616 ~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L  695 (1042)
                                             -....+.|+.|++.+|.++...-+.+.+...|++|+|++|++. .+|+....-+..|
T Consensus       354 -----------------------~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~L  409 (1081)
T KOG0618|consen  354 -----------------------EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEEL  409 (1081)
T ss_pred             -----------------------cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHh
Confidence                                   0112455666777777777766667777788888888888886 6777665555778


Q ss_pred             cEEECCCCccccccCCCCCCCCCCcEEeCCCCcccccCCccccCCCCCcEEECCCCccccccChhhhcCCCCcEEEecCc
Q 001624          696 GVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSN  775 (1042)
Q Consensus       696 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N  775 (1042)
                      +.|+||+|+++. +|.++.++..|++|...+|++. ..| .+..++.|+.+|+|.|+++...-..-..-++|++|||++|
T Consensus       410 eeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN  486 (1081)
T KOG0618|consen  410 EELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGN  486 (1081)
T ss_pred             HHHhcccchhhh-hhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCC
Confidence            888888888874 4577778888888888888887 566 7778888888888888887543222222378888888888


Q ss_pred             eeeeeccCCCCCCCCCcccEEeccCC
Q 001624          776 SFYGSITCRENDDSWPMLQIVDIASN  801 (1042)
Q Consensus       776 ~l~~~i~~~~~~~~l~~L~~Ldls~N  801 (1042)
                      .-.-.  .-..+..+..+..+|+.-|
T Consensus       487 ~~l~~--d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  487 TRLVF--DHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             ccccc--chhhhHHhhhhhheecccC
Confidence            63110  0223444555555555555

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=4.9e-34  Score=323.41  Aligned_cols=417  Identities=29%  Similarity=0.398  Sum_probs=223.9

Q ss_pred             EEccCCCCCCCchhhhhcCCCCCEEECCCCCCCCCCCCCCCCCCCCcEEEcCCccccccCCccccCCCCCCEEEccCCCC
Q 001624          264 LNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNL  343 (1042)
Q Consensus       264 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  343 (1042)
                      +|++.+.+. .+|..+..-..++.|++..|.+...+.+...+.-+|+.|++++|++. ..|..+..+.+|+.|+++.|.+
T Consensus         3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i   80 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI   80 (1081)
T ss_pred             cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence            344444444 45555554444666666666544433333333334555555555544 3445555555556666665555


Q ss_pred             CCCcchhccCCCCCCEEEccCCcccCCCCccCCCCCccEEEccCCCCCCCCCcccccCCCCccEEcccCcccCCcCCccc
Q 001624          344 SGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSL  423 (1042)
Q Consensus       344 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~l  423 (1042)
                      . ..|.+..++.+|+++.|.+|.+.                        ..|.. +..+.+|++|+++.|.+. .+|..+
T Consensus        81 ~-~vp~s~~~~~~l~~lnL~~n~l~------------------------~lP~~-~~~lknl~~LdlS~N~f~-~~Pl~i  133 (1081)
T KOG0618|consen   81 R-SVPSSCSNMRNLQYLNLKNNRLQ------------------------SLPAS-ISELKNLQYLDLSFNHFG-PIPLVI  133 (1081)
T ss_pred             h-hCchhhhhhhcchhheeccchhh------------------------cCchh-HHhhhcccccccchhccC-CCchhH
Confidence            5 34455555555555555555444                        33433 555666666666666654 555556


Q ss_pred             cCCCCCcEEEccCCCCCCCCCcccccccCcCCeeecccccCCCCCCcchhccCcCCEEEccCCccccccchHHHHhcccC
Q 001624          424 FSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNL  503 (1042)
Q Consensus       424 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L  503 (1042)
                      ..+..++.+..++|.....++.      ..++.+++..|.+.+.++..+..++.  .|++++|.+. .   ..+..+.+|
T Consensus       134 ~~lt~~~~~~~s~N~~~~~lg~------~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~---~dls~~~~l  201 (1081)
T KOG0618|consen  134 EVLTAEEELAASNNEKIQRLGQ------TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V---LDLSNLANL  201 (1081)
T ss_pred             HhhhHHHHHhhhcchhhhhhcc------ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-h---hhhhhccch
Confidence            5666666666666622111111      12666777777777777777777666  6888888875 2   346677888


Q ss_pred             CeEEccCceeeeecCCCCCCcccccEEEeCCCCCCCCCCCCCCCcccEEECCCCCCCCCcChhHhhhcCCCccEEEccCC
Q 001624          504 IRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHN  583 (1042)
Q Consensus       504 ~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~lp~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N  583 (1042)
                      +.+....|++..+...    .++++.|+.++|.++.+..-....+|+++|+++|+++ .+|+|+..+.  +|+.++..+|
T Consensus       202 ~~l~c~rn~ls~l~~~----g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~--nle~l~~n~N  274 (1081)
T KOG0618|consen  202 EVLHCERNQLSELEIS----GPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACA--NLEALNANHN  274 (1081)
T ss_pred             hhhhhhhcccceEEec----CcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcc--cceEecccch
Confidence            8888888877654432    2367777777777774443344457778888888777 5567666543  3666666666


Q ss_pred             ccccCCCCcccccCCCceEEecCCCcccccCCCCCCCCcEEeccCCccccCCCCCcccccccceeeecccCccccccchh
Q 001624          584 LLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPET  663 (1042)
Q Consensus       584 ~l~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~l~~L~l~~n~l~~~~p~~  663 (1042)
                      +++.++..  +....+|+.+++.+|.+                                              . .+|+.
T Consensus       275 ~l~~lp~r--i~~~~~L~~l~~~~nel----------------------------------------------~-yip~~  305 (1081)
T KOG0618|consen  275 RLVALPLR--ISRITSLVSLSAAYNEL----------------------------------------------E-YIPPF  305 (1081)
T ss_pred             hHHhhHHH--HhhhhhHHHHHhhhhhh----------------------------------------------h-hCCCc
Confidence            66544221  12222344444444443                                              3 23333


Q ss_pred             hhccCCCcEEEccCCcCccccChhHhhccCc-ccEEECCCCccccccCCCCCCCCCCcEEeCCCCcccccCCccccCCCC
Q 001624          664 ICRAKYLLVLDLSNNKLSGKMPTCLIKMSDI-LGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRK  742 (1042)
Q Consensus       664 ~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  742 (1042)
                      ....+.|++|||..|++. .+|+.+...... |..|+.+.|++.......=...+.|+.|.+.+|.++...-..+.+..+
T Consensus       306 le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~h  384 (1081)
T KOG0618|consen  306 LEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKH  384 (1081)
T ss_pred             ccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccc
Confidence            444555555555555554 444433332222 444555555554333111122334555555555555544444555555


Q ss_pred             CcEEECCCCccccccChhhhcCCCCcEEEecCceee
Q 001624          743 LEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFY  778 (1042)
Q Consensus       743 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  778 (1042)
                      |++|+|++|++.......+.++..|+.|+|++|++.
T Consensus       385 LKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~  420 (1081)
T KOG0618|consen  385 LKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT  420 (1081)
T ss_pred             eeeeeecccccccCCHHHHhchHHhHHHhcccchhh
Confidence            555555555554333334444555555555555443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=3.3e-32  Score=293.74  Aligned_cols=368  Identities=28%  Similarity=0.391  Sum_probs=282.1

Q ss_pred             cCCCCCeeeCCCCCCCCCCCCCccCCCCCCCEEECCCCCCCCCCchhhhcCCCCcEEeCCCCCCCCCCcccCCCChHHHH
Q 001624          100 SLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLL  179 (1042)
Q Consensus       100 ~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~~l  179 (1042)
                      -++..|-.|+++|.|+|..+|.....+++++.|.|...++. .+|+.++.|.+|++|.+++|++         ..+.+.+
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L---------~~vhGEL   74 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQL---------ISVHGEL   74 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhh---------Hhhhhhh
Confidence            35566777788888887778888888888888888888776 7888888888888888888864         2233446


Q ss_pred             hcCcccccccCCCccCCCcchhhHHHhhccCCCccEEEccCCcCCCCCCccccCCCCCCEEECCCCCCCCCchHhhhCCC
Q 001624          180 QNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFF  259 (1042)
Q Consensus       180 ~~l~~L~~L~L~~~~l~~~~~~~l~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~  259 (1042)
                      ..++.|+.+.+..|++...++  ...+..+ ..|+.|||++|++. +.|..+.+-+++-+|+|++|+|..+....|.+++
T Consensus        75 s~Lp~LRsv~~R~N~LKnsGi--P~diF~l-~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt  150 (1255)
T KOG0444|consen   75 SDLPRLRSVIVRDNNLKNSGI--PTDIFRL-KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT  150 (1255)
T ss_pred             ccchhhHHHhhhccccccCCC--Cchhccc-ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhH
Confidence            778888888888887765543  2334444 78999999999998 5788899999999999999999986666788999


Q ss_pred             CCCEEEccCCCCCCCchhhhhcCCCCCEEECCCCCCCCCCCCCCCCCCCCcEEEcCCcccc-ccCCccccCCCCCCEEEc
Q 001624          260 NLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFS-GVLPDSIGNLKNLSRLDL  338 (1042)
Q Consensus       260 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L  338 (1042)
                      .|-.|||++|++. .+|+.+..+.+|++|+|++|++....+..+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|+
T Consensus       151 DLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl  229 (1255)
T KOG0444|consen  151 DLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL  229 (1255)
T ss_pred             hHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence            9999999999998 78889999999999999999988777788888999999999987544 468999999999999999


Q ss_pred             cCCCCCCCcchhccCCCCCCEEEccCCcccCCCCccCCCCCccEEEccCCCCCCCCCcccccCCCCccEEcccCcccC-C
Q 001624          339 ARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALN-G  417 (1042)
Q Consensus       339 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~-~  417 (1042)
                      +.|.+. ..|+.+.++++|+.|+||+|.++..--....-.+|++|+++.|+++ .+|.. +..+++|+.|.+.+|+++ .
T Consensus       230 S~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~a-vcKL~kL~kLy~n~NkL~Fe  306 (1255)
T KOG0444|consen  230 SENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDA-VCKLTKLTKLYANNNKLTFE  306 (1255)
T ss_pred             cccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHH-HhhhHHHHHHHhccCccccc
Confidence            999998 7899999999999999999998854332222267777788887776 56655 777777777777777765 2


Q ss_pred             cCCccccCCCCCcEEEccCCCCCCCCCcccccccCcCCeeecccccCCCCCCcchhccCcCCEEEccCCccccccchHHH
Q 001624          418 SIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAI  497 (1042)
Q Consensus       418 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~  497 (1042)
                      -+|+.++.+.+|+.+..++|.+.                          .+|..++.|.+|+.|.|+.|++. ++| +++
T Consensus       307 GiPSGIGKL~~Levf~aanN~LE--------------------------lVPEglcRC~kL~kL~L~~NrLi-TLP-eaI  358 (1255)
T KOG0444|consen  307 GIPSGIGKLIQLEVFHAANNKLE--------------------------LVPEGLCRCVKLQKLKLDHNRLI-TLP-EAI  358 (1255)
T ss_pred             CCccchhhhhhhHHHHhhccccc--------------------------cCchhhhhhHHHHHhccccccee-ech-hhh
Confidence            46677777666666666666554                          45555555555555555555554 333 344


Q ss_pred             HhcccCCeEEccCcee
Q 001624          498 QRLRNLIRLELSYNNL  513 (1042)
Q Consensus       498 ~~l~~L~~L~Ls~n~l  513 (1042)
                      .-++.|+.||+..|.-
T Consensus       359 HlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  359 HLLPDLKVLDLRENPN  374 (1255)
T ss_pred             hhcCCcceeeccCCcC
Confidence            5555555555555543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=7.3e-31  Score=283.37  Aligned_cols=362  Identities=30%  Similarity=0.414  Sum_probs=228.3

Q ss_pred             CcEEEcCCcccc-ccCCccccCCCCCCEEEccCCCCCCCcchhccCCCCCCEEEccCCcccCCCCccCCCCCccEEEccC
Q 001624          309 LRTLMLSYANFS-GVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSN  387 (1042)
Q Consensus       309 L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~  387 (1042)
                      .+-.|+++|.++ +..|.....+++++.|.|.+.++. .+|+.++.+.+|++|.+++|++..........+.|+.+.+..
T Consensus         9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~   87 (1255)
T KOG0444|consen    9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRD   87 (1255)
T ss_pred             eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhc
Confidence            444556666666 456777777777777777777776 577777777788888887777765544455556777777777


Q ss_pred             CCCCC-CCCcccccCCCCccEEcccCcccCCcCCccccCCCCCcEEEccCCCCCCCCCcccccccCcCCeeecccccCCC
Q 001624          388 NALPG-AISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEG  466 (1042)
Q Consensus       388 n~l~~-~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~  466 (1042)
                      |++.. .||.. +..+..|+.|||+.|++. ..|..+..-+++-.|++++|+|. .||...+..+..|-.||||+|++. 
T Consensus        88 N~LKnsGiP~d-iF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-  163 (1255)
T KOG0444|consen   88 NNLKNSGIPTD-IFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-  163 (1255)
T ss_pred             cccccCCCCch-hcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-
Confidence            76643 34554 667777888888888877 66777777777777888877776 566666666777777888888777 


Q ss_pred             CCCcchhccCcCCEEEccCCccccccchHHHHhcccCCeEEccCceeeeecCCCCCCcccccEEEeCCCCCCCCCC-CCC
Q 001624          467 PIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPN-LKS  545 (1042)
Q Consensus       467 ~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~lp~-l~~  545 (1042)
                      .+|..+..+..|++|.|++|.+. ......+..+++|++|.+++.+-+                      +..+|. +..
T Consensus       164 ~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRT----------------------l~N~Ptsld~  220 (1255)
T KOG0444|consen  164 MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRT----------------------LDNIPTSLDD  220 (1255)
T ss_pred             hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccch----------------------hhcCCCchhh
Confidence            56777777888888888888775 333333333444444444443322                      225665 777


Q ss_pred             CCcccEEECCCCCCCCCcChhHhhhcCCCccEEEccCCccccCCCCcccccCCCceEEecCCCcccccCCCCCCCCcEEe
Q 001624          546 QSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVD  625 (1042)
Q Consensus       546 ~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~  625 (1042)
                      +.+|..+|+|.|.+. .+|+.+..+.  +|+.|+||+|+|+.+...                                  
T Consensus       221 l~NL~dvDlS~N~Lp-~vPecly~l~--~LrrLNLS~N~iteL~~~----------------------------------  263 (1255)
T KOG0444|consen  221 LHNLRDVDLSENNLP-IVPECLYKLR--NLRRLNLSGNKITELNMT----------------------------------  263 (1255)
T ss_pred             hhhhhhccccccCCC-cchHHHhhhh--hhheeccCcCceeeeecc----------------------------------
Confidence            778888888888887 6777666544  355555555555443110                                  


Q ss_pred             ccCCccccCCCCCcccccccceeeecccCccccccchhhhccCCCcEEEccCCcCccccChhHhhccCcccEEECCCCcc
Q 001624          626 YSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSL  705 (1042)
Q Consensus       626 ls~n~~~~~~p~~~~~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l  705 (1042)
                                                            .+.-.+|++|++|.|+++ .+|.++..+ +.|+.|.+.+|++
T Consensus       264 --------------------------------------~~~W~~lEtLNlSrNQLt-~LP~avcKL-~kL~kLy~n~NkL  303 (1255)
T KOG0444|consen  264 --------------------------------------EGEWENLETLNLSRNQLT-VLPDAVCKL-TKLTKLYANNNKL  303 (1255)
T ss_pred             --------------------------------------HHHHhhhhhhccccchhc-cchHHHhhh-HHHHHHHhccCcc
Confidence                                                  111123444444444444 445544444 4455555555544


Q ss_pred             c-cccCCCCCCCCCCcEEeCCCCcccccCCccccCCCCCcEEECCCCccccccChhhhcCCCCcEEEecCcee
Q 001624          706 S-GTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSF  777 (1042)
Q Consensus       706 ~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l  777 (1042)
                      + .-+|..++.+.+|+.+..++|.+. ..|+++..|..|+.|.|++|++. .+|+.+.-++.|++||++.|+-
T Consensus       304 ~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  304 TFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             cccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence            4 234555666666666666666665 56666666666666666666664 3566666666666666666643

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=6.8e-25  Score=226.96  Aligned_cols=416  Identities=22%  Similarity=0.208  Sum_probs=224.2

Q ss_pred             cCCEEEccCCccccccchHHHHhcccCCeEEccCceeeeecCCCCCCcccccEEEeCC-CCCCCCCC--CCCCCcccEEE
Q 001624          477 NLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLAS-CKLKVIPN--LKSQSKLFNLD  553 (1042)
Q Consensus       477 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~-n~l~~lp~--l~~~~~L~~L~  553 (1042)
                      .-..++|..|+|+ .+|..+|+.+++|++|||++|.|+.+.+..|....++.+|.+.+ |+|+.+|.  |.++..++.|.
T Consensus        68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            3445666666665 56666666666666666666666666666666666666655555 67777776  77777777777


Q ss_pred             CCCCCCCCCcChhHhhhcCCCccEEEccCCccccCCCCcccccCCCceEEecCCCccccc--CCCCCCCCcEEeccCCcc
Q 001624          554 LSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGN--IPHPPRNAVLVDYSNNSF  631 (1042)
Q Consensus       554 Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l~~N~l~~~--~p~~~~~l~~l~ls~n~~  631 (1042)
                      +.-|++.......++.++  ++..|.+-+|.+..+.. ..+..+..++.+.+..|.+...  .|....     ++.-|. 
T Consensus       147 lNan~i~Cir~~al~dL~--~l~lLslyDn~~q~i~~-~tf~~l~~i~tlhlA~np~icdCnL~wla~-----~~a~~~-  217 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLP--SLSLLSLYDNKIQSICK-GTFQGLAAIKTLHLAQNPFICDCNLPWLAD-----DLAMNP-  217 (498)
T ss_pred             cChhhhcchhHHHHHHhh--hcchhcccchhhhhhcc-ccccchhccchHhhhcCccccccccchhhh-----HHhhch-
Confidence            777777766666666554  36666777777766543 2355666777777777775321  111000     000010 


Q ss_pred             ccCCCCCcccccccceeeecccCccccccchhhhcc-CCCcEEEccCCcCccccChhHhhccCcccEEECCCCccccccC
Q 001624          632 TSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRA-KYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLS  710 (1042)
Q Consensus       632 ~~~~p~~~~~~~~~l~~L~l~~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~~  710 (1042)
                           .. ........-..+.+.++...-+..|... ..+..=..+.+...+..|..-+..+++|+.|+|++|+++++-+
T Consensus       218 -----ie-tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~  291 (498)
T KOG4237|consen  218 -----IE-TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED  291 (498)
T ss_pred             -----hh-cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence                 00 0112222233344455544444443321 1221111222323334454333334666777777777776666


Q ss_pred             CCCCCCCCCcEEeCCCCcccccCCccccCCCCCcEEECCCCccccccChhhhcCCCCcEEEecCceeeeeccCCCCCCCC
Q 001624          711 VTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSW  790 (1042)
Q Consensus       711 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i~~~~~~~~l  790 (1042)
                      .+|.+...++.|.|..|++...-...|.++..|++|+|.+|+|+...|..|..+.+|.+|+|-+|+|.            
T Consensus       292 ~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~------------  359 (498)
T KOG4237|consen  292 GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN------------  359 (498)
T ss_pred             hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc------------
Confidence            66666666777777777666655666666666666666666666666666666666666666666553            


Q ss_pred             CcccEEeccCCCCCCCCChhhhhhhhhhccccccc----ccccccceeeeccccc----eeeeeEEEecCchhhhhhhcc
Q 001624          791 PMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEA----QSNFKDVHFELLTDIF----YQDVVTVTWKGREMELVKILS  862 (1042)
Q Consensus       791 ~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~l~  862 (1042)
                                    ..---.|++.|..-.......    ...+..+.+.......    ..+.......+.-+.   ..+
T Consensus       360 --------------CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~---~c~  422 (498)
T KOG4237|consen  360 --------------CNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPP---PCT  422 (498)
T ss_pred             --------------CccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCC---Ccc
Confidence                          222223344442221110000    0000011100000000    000000000000000   111


Q ss_pred             cc-cEEEccCCcccccCcccccccCCCcEEECCCCcccccCCccccCCCCCCeEEccCCcccccccccccCCCcCCeeec
Q 001624          863 IF-TSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNL  941 (1042)
Q Consensus       863 ~l-~~LdLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~L~~L~~L~l  941 (1042)
                      -+ +....|++.+. .+|..+-  ..-..|++.+|.++ .+|.+  .++.| .+|||+|+++..--..|++|+.|.+|-+
T Consensus       423 c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlil  495 (498)
T KOG4237|consen  423 CLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLIL  495 (498)
T ss_pred             hhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEE
Confidence            11 12234444444 3333221  13456788999998 67776  77888 8999999999888889999999999999


Q ss_pred             cCC
Q 001624          942 SHN  944 (1042)
Q Consensus       942 s~N  944 (1042)
                      |||
T Consensus       496 syn  498 (498)
T KOG4237|consen  496 SYN  498 (498)
T ss_pred             ecC
Confidence            997

>PLN03210 Resistant to P

Probab=99.87  E-value=1.7e-20  Score=240.85  Aligned_cols=339  Identities=22%  Similarity=0.276  Sum_probs=201.3

Q ss_pred             CCcccCCCCCeeeCCCCCCCC-----CCCCCccCCCC-CCCEEECCCCCCCCCCchhhhcCCCCcEEeCCCCCCCCCCcc
Q 001624           96 SPLLSLKYLQSLNLAFNMFNA-----TEIPSGLGNLT-NLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLK  169 (1042)
Q Consensus        96 ~~l~~l~~L~~L~Ls~n~~~~-----~~lp~~l~~l~-~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~  169 (1042)
                      .++..+++|++|.+..+.+..     ..+|..+..++ +||.|++.++.+. .+|..+ ...+|++|++++|.+...+  
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~--  627 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLW--  627 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccccc--
Confidence            456677777777776543211     12555555543 4677777666554 555544 3455666666554321100  


Q ss_pred             cCCCChHHHHhcCcccccccCCCccCCCcchhhHHHhhccCCCccEEEccCCcCCCCCCccccCCCCCCEEECCCCCCCC
Q 001624          170 LENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSS  249 (1042)
Q Consensus       170 ~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  249 (1042)
                                                        ..... +++|+.|+|++|...+.+| .++.+++|++|++++|....
T Consensus       628 ----------------------------------~~~~~-l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~  671 (1153)
T PLN03210        628 ----------------------------------DGVHS-LTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLV  671 (1153)
T ss_pred             ----------------------------------ccccc-CCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCcc
Confidence                                              00001 1455555555444333333 24555555555555554444


Q ss_pred             CchHhhhCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEECCCCCCCCCCCCCCCCCCCCcEEEcCCccccccCCccccC
Q 001624          250 PVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGN  329 (1042)
Q Consensus       250 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  329 (1042)
                      .+|..++.+++|+.|++++|...+.+|..+ ++++|+.|++++|                        ...+.+|..   
T Consensus       672 ~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc------------------------~~L~~~p~~---  723 (1153)
T PLN03210        672 ELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC------------------------SRLKSFPDI---  723 (1153)
T ss_pred             ccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC------------------------CCccccccc---
Confidence            455555555555555555554333444333 4445555555544                        333333321   


Q ss_pred             CCCCCEEEccCCCCCCCcchhccCCCCCCEEEccCCccc-------CCCCcc-CCCCCccEEEccCCCCCCCCCcccccC
Q 001624          330 LKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFV-------GPIPSL-HMSKNLTHLDLSNNALPGAISSTDWEH  401 (1042)
Q Consensus       330 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-------~~~~~~-~~~~~L~~L~L~~n~l~~~i~~~~~~~  401 (1042)
                      .++|++|++++|.+. .+|..+ .+++|++|++.++...       ...+.. ...++|+.|++++|...+.+|.. +++
T Consensus       724 ~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s-i~~  800 (1153)
T PLN03210        724 STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS-IQN  800 (1153)
T ss_pred             cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh-hhC
Confidence            245566666666654 344433 3555666655543211       111111 12267888899888777778877 888


Q ss_pred             CCCccEEcccCcccCCcCCccccCCCCCcEEEccCCCCCCCCCcccccccCcCCeeecccccCCCCCCcchhccCcCCEE
Q 001624          402 LSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKIL  481 (1042)
Q Consensus       402 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  481 (1042)
                      +++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..    ..+|+.|++++|.++ .+|.++..+++|+.|
T Consensus       801 L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~----~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L  874 (1153)
T PLN03210        801 LHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI----STNISDLNLSRTGIE-EVPWWIEKFSNLSFL  874 (1153)
T ss_pred             CCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc----ccccCEeECCCCCCc-cChHHHhcCCCCCEE
Confidence            9999999999887656777765 6889999999998765555543    467899999999887 678888999999999


Q ss_pred             EccCCccccccchHHHHhcccCCeEEccCce
Q 001624          482 MLSSNKLNGTVQLAAIQRLRNLIRLELSYNN  512 (1042)
Q Consensus       482 ~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~  512 (1042)
                      ++++|+-...++. .+..+++|+.+++++|.
T Consensus       875 ~L~~C~~L~~l~~-~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        875 DMNGCNNLQRVSL-NISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ECCCCCCcCccCc-ccccccCCCeeecCCCc
Confidence            9988654445654 46678888888888874

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=3.8e-21  Score=227.91  Aligned_cols=264  Identities=26%  Similarity=0.299  Sum_probs=149.0

Q ss_pred             CCccEEEccCCccccCCCCcccccCCCceEEecCCCcccccCCCCCCCCcEEeccCCccccCCCCCcccccccceeeecc
Q 001624          573 GGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLS  652 (1042)
Q Consensus       573 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~l~~L~l~  652 (1042)
                      ..-..|++++|.++.+|..  +..  +++.|++.+|+++. +|..+.+|+.|++++|+++ .+|.               
T Consensus       201 ~~~~~LdLs~~~LtsLP~~--l~~--~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~Lt-sLP~---------------  259 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDC--LPA--HITTLVIPDNNLTS-LPALPPELRTLEVSGNQLT-SLPV---------------  259 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcc--hhc--CCCEEEccCCcCCC-CCCCCCCCcEEEecCCccC-cccC---------------
Confidence            3456677777777766542  222  56667777776663 4444445555555555544 2222               


Q ss_pred             cCccccccchhhhccCCCcEEEccCCcCccccChhHhhccCcccEEECCCCccccccCCCCCCCCCCcEEeCCCCccccc
Q 001624          653 SNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGT  732 (1042)
Q Consensus       653 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  732 (1042)
                                .   .++|+.|++++|.++ .+|..    ++.|+.|++++|+++.. |..   .++|+.|++++|++++ 
T Consensus       260 ----------l---p~sL~~L~Ls~N~L~-~Lp~l----p~~L~~L~Ls~N~Lt~L-P~~---p~~L~~LdLS~N~L~~-  316 (788)
T PRK15387        260 ----------L---PPGLLELSIFSNPLT-HLPAL----PSGLCKLWIFGNQLTSL-PVL---PPGLQELSVSDNQLAS-  316 (788)
T ss_pred             ----------c---ccccceeeccCCchh-hhhhc----hhhcCEEECcCCccccc-ccc---ccccceeECCCCcccc-
Confidence                      1   234555555555554 34431    13455555555555532 221   2345666666666653 


Q ss_pred             CCccccCCCCCcEEECCCCccccccChhhhcCCCCcEEEecCceeeeeccCCCCCCCCCcccEEeccCCCCCCCCChhhh
Q 001624          733 VPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCI  812 (1042)
Q Consensus       733 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~  812 (1042)
                      +|...   .+|+.|++++|++++ +|..   ..+|++|+|++|++.+.   |..   .++|+.|++++|.+++ +|.   
T Consensus       317 Lp~lp---~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~L---P~l---p~~L~~L~Ls~N~L~~-LP~---  379 (788)
T PRK15387        317 LPALP---SELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLASL---PTL---PSELYKLWAYNNRLTS-LPA---  379 (788)
T ss_pred             CCCCc---ccccccccccCcccc-cccc---ccccceEecCCCccCCC---CCC---Ccccceehhhcccccc-Ccc---
Confidence            23221   235555666666553 3321   13556666666665532   221   2345556666666653 331   


Q ss_pred             hhhhhhcccccccccccccceeeeccccceeeeeEEEecCchhhhhhhcccccEEEccCCcccccCcccccccCCCcEEE
Q 001624          813 TSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLN  892 (1042)
Q Consensus       813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~l~~LdLs~N~l~g~ip~~~~~l~~L~~L~  892 (1042)
                                                                     ....|+.||+++|++++ +|...   +.|+.|+
T Consensus       380 -----------------------------------------------l~~~L~~LdLs~N~Lt~-LP~l~---s~L~~Ld  408 (788)
T PRK15387        380 -----------------------------------------------LPSGLKELIVSGNRLTS-LPVLP---SELKELM  408 (788)
T ss_pred             -----------------------------------------------cccccceEEecCCcccC-CCCcc---cCCCEEE
Confidence                                                           11245667777777774 55432   4677788


Q ss_pred             CCCCcccccCCccccCCCCCCeEEccCCcccccccccccCCCcCCeeeccCCcccccCCCC
Q 001624          893 FSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVS  953 (1042)
Q Consensus       893 Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~L~~L~~L~ls~N~l~g~ip~~  953 (1042)
                      +|+|++++ +|...   .+|+.|+|++|+|+ .+|..+.+++.|+.|+|++|+|+|.+|..
T Consensus       409 LS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~  464 (788)
T PRK15387        409 VSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  464 (788)
T ss_pred             ccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence            88888875 66543   35677888888887 57777888888888888888888877753

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.85  E-value=1.8e-23  Score=216.51  Aligned_cols=278  Identities=20%  Similarity=0.171  Sum_probs=165.7

Q ss_pred             CCccEEEccCCcCCCCCCccccCCCCCCEEECCCCCCCCCchHhhhCCCCCCEEEccC-CCCCCCchhhhhcCCCCCEEE
Q 001624          211 PKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSS-SGLNGTFPETILQVHTLQTLD  289 (1042)
Q Consensus       211 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~  289 (1042)
                      +.-.+++|..|.|+.+.+.+|+.+++|+.|||+.|.|+.+-|++|.++.+|..|-+.+ |+|+...-..|+.+..|+.|.
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            5677788888888887778888888888888888888888888888888777766655 777754445677777777777


Q ss_pred             CCCCCCCCCCCCCCCCCCCCcEEEcCCccccccCCccccCCCCCCEEEccCCCCCC------------CcchhccCCCCC
Q 001624          290 LSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSG------------SIPTSLAKLTQL  357 (1042)
Q Consensus       290 Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~------------~~p~~l~~l~~L  357 (1042)
                      +.-|.+.-.....|..+++|..|.+.+|.+..+-...|..+..++.+.+..|.+..            ..|..++.....
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence            77776655555566667777777777777664444467777777777777666321            112222222222


Q ss_pred             CEEEccCCcccCCCCccCCC--CCccEEEccCCCCCCCCCcccccCCCCccEEcccCcccCCcCCccccCCCCCcEEEcc
Q 001624          358 VYLDLSSNKFVGPIPSLHMS--KNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLA  435 (1042)
Q Consensus       358 ~~L~Ls~n~l~~~~~~~~~~--~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  435 (1042)
                      .-..+.+.++...-+.-+..  ..+..=-.+.+...+..|...|..+++|++|++++|++++.-+.+|.....+++|.+.
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~  306 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT  306 (498)
T ss_pred             chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence            22222222222111111111  1111111223333445555556777777777777777776666666666777777777


Q ss_pred             CCCCCCCCCcccccccCcCCeeecccccCCCCCCcchhccCcCCEEEccCCccc
Q 001624          436 NNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLN  489 (1042)
Q Consensus       436 ~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  489 (1042)
                      .|++. .+....+..+..|+.|+|.+|+|+...|.+|..+..|.+|++-.|.+.
T Consensus       307 ~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  307 RNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             cchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            76665 333444444555555555555555555555555555555555555443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=6e-21  Score=226.23  Aligned_cols=266  Identities=26%  Similarity=0.332  Sum_probs=145.1

Q ss_pred             CcEEEccCCCCCCCCCcccccccCcCCeeecccccCCCCCCcchhccCcCCEEEccCCccccccchHHHHhcccCCeEEc
Q 001624          429 LQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLEL  508 (1042)
Q Consensus       429 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L  508 (1042)
                      -..|+++++.++ .+|...   .++|+.|++++|+++. +|.   ..++|++|++++|+++ .+|.    ..++|+.|++
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l---~~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~L  269 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCL---PAHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSI  269 (788)
T ss_pred             CcEEEcCCCCCC-cCCcch---hcCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccC----cccccceeec
Confidence            445666666665 344322   1355666666665552 332   1345555555555554 3331    1234444454


Q ss_pred             cCceeeeecCCCCCCcccccEEEeCCCCCCCCCCCCCCCcccEEECCCCCCCCCcChhHhhhcCCCccEEEccCCccccC
Q 001624          509 SYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSL  588 (1042)
Q Consensus       509 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~lp~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~  588 (1042)
                      ++|.+                        +.+|.+  ..+|+.|++++|+++ .+|..     .++|+.|++++|+++.+
T Consensus       270 s~N~L------------------------~~Lp~l--p~~L~~L~Ls~N~Lt-~LP~~-----p~~L~~LdLS~N~L~~L  317 (788)
T PRK15387        270 FSNPL------------------------THLPAL--PSGLCKLWIFGNQLT-SLPVL-----PPGLQELSVSDNQLASL  317 (788)
T ss_pred             cCCch------------------------hhhhhc--hhhcCEEECcCCccc-ccccc-----ccccceeECCCCccccC
Confidence            44444                        444431  123444444444444 22321     12345555555554444


Q ss_pred             CCCcccccCCCceEEecCCCcccccCCCCCCCCcEEeccCCccccCCCCCcccccccceeeecccCccccccchhhhccC
Q 001624          589 QRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAK  668 (1042)
Q Consensus       589 ~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~l~~L~l~~n~l~~~~p~~~~~l~  668 (1042)
                      +..  .   ..|+.|++++|++++ +|..+.+|+.|++++|++++ +|..    .++++.|++++|++++ +|..   ..
T Consensus       318 p~l--p---~~L~~L~Ls~N~L~~-LP~lp~~Lq~LdLS~N~Ls~-LP~l----p~~L~~L~Ls~N~L~~-LP~l---~~  382 (788)
T PRK15387        318 PAL--P---SELCKLWAYNNQLTS-LPTLPSGLQELSVSDNQLAS-LPTL----PSELYKLWAYNNRLTS-LPAL---PS  382 (788)
T ss_pred             CCC--c---ccccccccccCcccc-ccccccccceEecCCCccCC-CCCC----Ccccceehhhcccccc-Cccc---cc
Confidence            321  0   134455555555543 44344455555555555553 3321    2345566666666664 4432   24


Q ss_pred             CCcEEEccCCcCccccChhHhhccCcccEEECCCCccccccCCCCCCCCCCcEEeCCCCcccccCCccccCCCCCcEEEC
Q 001624          669 YLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDL  748 (1042)
Q Consensus       669 ~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  748 (1042)
                      +|+.|++++|+++ .+|..    .++|+.|++++|++++ +|..+   .+|+.|++++|+++ .+|..+.++++|+.|+|
T Consensus       383 ~L~~LdLs~N~Lt-~LP~l----~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL  452 (788)
T PRK15387        383 GLKELIVSGNRLT-SLPVL----PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  452 (788)
T ss_pred             ccceEEecCCccc-CCCCc----ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence            5778888888877 46643    2567788888888775 44332   35777888888887 57777888888888888


Q ss_pred             CCCccccccChhhhcC
Q 001624          749 GNNKIRDTFPCWLKNI  764 (1042)
Q Consensus       749 s~N~l~~~~p~~l~~l  764 (1042)
                      ++|++++..|..+..+
T Consensus       453 s~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        453 EGNPLSERTLQALREI  468 (788)
T ss_pred             CCCCCCchHHHHHHHH
Confidence            8888887777666443

>PLN03210 Resistant to P

Probab=99.85  E-value=7.7e-20  Score=234.85  Aligned_cols=340  Identities=19%  Similarity=0.240  Sum_probs=209.9

Q ss_pred             cchHHHHhcccCCeEEccCceee------e-ecCCCCCCcccccEEEeCCCCCCCCCCCCCCCcccEEECCCCCCCCCcC
Q 001624          492 VQLAAIQRLRNLIRLELSYNNLT------V-NASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIP  564 (1042)
Q Consensus       492 i~~~~~~~l~~L~~L~Ls~n~l~------~-~~~~~~~~~~~L~~L~L~~n~l~~lp~l~~~~~L~~L~Ls~N~l~~~~p  564 (1042)
                      +...+|.++++|+.|.+..+...      . ++......+.+|+.|.+.++.++.+|.-....+|++|++++|++. .+|
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L~  627 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-KLW  627 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-ccc
Confidence            44456777888888877655321      1 112222345568888888888888887335677777888777766 343


Q ss_pred             hhHhhhcCCCccEEEccCCc-cccCCCCcccccCCCceEEecCCCcccccCCCCCCCCcEEeccCCccccCCCCCccccc
Q 001624          565 NWVWEIGNGGLEYLNLSHNL-LSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSM  643 (1042)
Q Consensus       565 ~~~~~~~~~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~l~ls~n~~~~~~p~~~~~~~  643 (1042)
                      ..+..  .++|+.|+++++. +..++.   +..+++|+.|++++|....                     .+|..+. .+
T Consensus       628 ~~~~~--l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~---------------------~lp~si~-~L  680 (1153)
T PLN03210        628 DGVHS--LTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLV---------------------ELPSSIQ-YL  680 (1153)
T ss_pred             ccccc--CCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCcc---------------------ccchhhh-cc
Confidence            33222  2346666665543 333321   3334455555555554433                     3343332 25


Q ss_pred             ccceeeecccCccccccchhhhccCCCcEEEccCCcCccccChhHhhccCcccEEECCCCccccccCCCCCCCCCCcEEe
Q 001624          644 NFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLD  723 (1042)
Q Consensus       644 ~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  723 (1042)
                      ++|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|..    ..+|+.|++++|.+.. +|..+ .+++|++|+
T Consensus       681 ~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~  753 (1153)
T PLN03210        681 NKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEE-FPSNL-RLENLDELI  753 (1153)
T ss_pred             CCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCcccc-ccccc-ccccccccc
Confidence            556666666655445555544 5666777777776655455532    2466777777777653 34333 456666666


Q ss_pred             CCCCcc-------cccCCccccCCCCCcEEECCCCccccccChhhhcCCCCcEEEecCceeeeeccCCCCCCCCCcccEE
Q 001624          724 LNENQL-------GGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIV  796 (1042)
Q Consensus       724 Ls~N~l-------~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i~~~~~~~~l~~L~~L  796 (1042)
                      +.++..       ....|..+...++|+.|++++|...+.+|.+++++++|+.|++++|...+.+  |... .+++|+.|
T Consensus       754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L--P~~~-~L~sL~~L  830 (1153)
T PLN03210        754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL--PTGI-NLESLESL  830 (1153)
T ss_pred             ccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee--CCCC-CccccCEE
Confidence            665332       1112222334467888888888777778888888888888888877655555  4433 67788888


Q ss_pred             eccCCCCCCCCChhhhhhhhhhcccccccccccccceeeeccccceeeeeEEEecCchhhhhhhcccccEEEccCCcccc
Q 001624          797 DIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDG  876 (1042)
Q Consensus       797 dls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~l~~LdLs~N~l~g  876 (1042)
                      ++++|.....+|.                                                  ...+++.|+|++|.++ 
T Consensus       831 ~Ls~c~~L~~~p~--------------------------------------------------~~~nL~~L~Ls~n~i~-  859 (1153)
T PLN03210        831 DLSGCSRLRTFPD--------------------------------------------------ISTNISDLNLSRTGIE-  859 (1153)
T ss_pred             ECCCCCccccccc--------------------------------------------------cccccCEeECCCCCCc-
Confidence            8887755444442                                                  1245677888888887 


Q ss_pred             cCcccccccCCCcEEECCC-CcccccCCccccCCCCCCeEEccCCc
Q 001624          877 PIPEKIGRLKSLYGLNFSQ-NAFGGPIPSTIGNLQQLESLDLSMNH  921 (1042)
Q Consensus       877 ~ip~~~~~l~~L~~L~Ls~-N~l~g~ip~~~~~l~~L~~LdLs~N~  921 (1042)
                      .+|..++.+++|+.|+|++ |++. .+|..++.++.|+.|+++++.
T Consensus       860 ~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        860 EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence            5788888888888888887 4555 477788888888888888774

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=3.9e-19  Score=212.63  Aligned_cols=97  Identities=26%  Similarity=0.380  Sum_probs=41.8

Q ss_pred             cceeeecccCccccccchhhhccCCCcEEEccCCcCccccChhHhhccCcccEEECCCCccccccCCCCCCCCCCcEEeC
Q 001624          645 FTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDL  724 (1042)
Q Consensus       645 ~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  724 (1042)
                      +|+.|++++|+++ .+|..+.  .+|+.|++++|++. .+|..+.   ++|+.|++++|+++. +|..+.  .+|+.|++
T Consensus       221 nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~L  290 (754)
T PRK15370        221 NIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP---SALQSLDLFHNKISC-LPENLP--EELRYLSV  290 (754)
T ss_pred             CCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh---CCCCEEECcCCccCc-cccccC--CCCcEEEC
Confidence            3444444444444 2233221  23555555555554 4444332   345555555555542 333332  24555555


Q ss_pred             CCCcccccCCccccCCCCCcEEECCCCccc
Q 001624          725 NENQLGGTVPKSLANCRKLEVLDLGNNKIR  754 (1042)
Q Consensus       725 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  754 (1042)
                      ++|++++ +|..+.  ++|+.|++++|+++
T Consensus       291 s~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt  317 (754)
T PRK15370        291 YDNSIRT-LPAHLP--SGITHLNVQSNSLT  317 (754)
T ss_pred             CCCcccc-Ccccch--hhHHHHHhcCCccc
Confidence            5555542 232221  24444555555444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=7.5e-19  Score=210.25  Aligned_cols=201  Identities=29%  Similarity=0.398  Sum_probs=115.4

Q ss_pred             cccEEECCCCCCCCCcChhHhhhcCCCccEEEccCCccccCCCCcccccCCCceEEecCCCcccccCCC-CCCCCcEEec
Q 001624          548 KLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPH-PPRNAVLVDY  626 (1042)
Q Consensus       548 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~l~~l~l  626 (1042)
                      +...|+++++.++ .+|..+.    +.++.|++++|+++.++...  .  ++|+.|++++|++++ +|. .+..      
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip----~~L~~L~Ls~N~LtsLP~~l--~--~nL~~L~Ls~N~Lts-LP~~l~~~------  242 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP----EQITTLILDNNELKSLPENL--Q--GNIKTLYANSNQLTS-IPATLPDT------  242 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc----cCCcEEEecCCCCCcCChhh--c--cCCCEEECCCCcccc-CChhhhcc------
Confidence            4577888888887 4665432    35888888888888765422  1  267777777777663 232 2223      


Q ss_pred             cCCccccCCCCCcccccccceeeecccCccccccchhhhccCCCcEEEccCCcCccccChhHhhccCcccEEECCCCccc
Q 001624          627 SNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLS  706 (1042)
Q Consensus       627 s~n~~~~~~p~~~~~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~  706 (1042)
                                         ++.|++++|.+. .+|..+.  ++|+.|++++|+++ .+|..+.   ++|+.|++++|+++
T Consensus       243 -------------------L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        243 -------------------IQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIR  296 (754)
T ss_pred             -------------------ccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCccc
Confidence                               444555555554 3344332  35666666666666 4555432   35666666666666


Q ss_pred             cccCCCCCCCCCCcEEeCCCCcccccCCccccCCCCCcEEECCCCccccccChhhhcCCCCcEEEecCceeeeeccCCCC
Q 001624          707 GTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCREN  786 (1042)
Q Consensus       707 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i~~~~~  786 (1042)
                      +. |..+.  .+|+.|++++|+++. +|..+.  ++|+.|++++|.+++ +|..+.  ++|+.|++++|++.. +  |..
T Consensus       297 ~L-P~~lp--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-L--P~~  364 (754)
T PRK15370        297 TL-PAHLP--SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-L--PET  364 (754)
T ss_pred             cC-cccch--hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-C--Chh
Confidence            43 33332  356666777776663 443332  466677777776665 444432  466666666666642 2  322


Q ss_pred             CCCCCcccEEeccCCCCC
Q 001624          787 DDSWPMLQIVDIASNNFG  804 (1042)
Q Consensus       787 ~~~l~~L~~Ldls~N~l~  804 (1042)
                      +  .+.|+.|++++|+++
T Consensus       365 l--p~~L~~LdLs~N~Lt  380 (754)
T PRK15370        365 L--PPTITTLDVSRNALT  380 (754)
T ss_pred             h--cCCcCEEECCCCcCC
Confidence            2  245666666666665

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=1.9e-18  Score=193.31  Aligned_cols=135  Identities=26%  Similarity=0.251  Sum_probs=57.6

Q ss_pred             cccceeeecccCccccc----cchhhhccCCCcEEEccCCcCcc------ccChhHhhccCcccEEECCCCccccccCCC
Q 001624          643 MNFTIFFSLSSNSITGV----IPETICRAKYLLVLDLSNNKLSG------KMPTCLIKMSDILGVLNLRGNSLSGTLSVT  712 (1042)
Q Consensus       643 ~~~l~~L~l~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~------~ip~~~~~~~~~L~~L~Ls~N~l~~~~~~~  712 (1042)
                      +..++.++++++.+++.    ++..+...+.++.++++++.+.+      .++..+.. .++|+.|++++|.+.+..+..
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~  100 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK-GCGLQELDLSDNALGPDGCGV  100 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh-cCceeEEEccCCCCChhHHHH
Confidence            34455555555555322    33334444555566665555541      11122222 234555555555554333333


Q ss_pred             CCCCCC---CcEEeCCCCcccc----cCCccccCC-CCCcEEECCCCccccc----cChhhhcCCCCcEEEecCceee
Q 001624          713 FPGNCG---LQTLDLNENQLGG----TVPKSLANC-RKLEVLDLGNNKIRDT----FPCWLKNISSLRVLVLRSNSFY  778 (1042)
Q Consensus       713 ~~~l~~---L~~L~Ls~N~l~~----~~p~~~~~l-~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~  778 (1042)
                      +..+..   |++|++++|++++    .+...+..+ ++|+.|++++|.+++.    ++..+..++.|++|++++|.+.
T Consensus       101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG  178 (319)
T ss_pred             HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence            322222   5555555554442    122233333 4455555555554421    2223333444444444444443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.67  E-value=2.3e-17  Score=184.59  Aligned_cols=186  Identities=23%  Similarity=0.245  Sum_probs=78.0

Q ss_pred             eeCCCCCCCCCCCCCccCCCCCCCEEECCCCCCCCC----CchhhhcCCCCcEEeCCCCCCCCCCcccCCCChHHHHhcC
Q 001624          107 LNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQ----IPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNL  182 (1042)
Q Consensus       107 L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~~l~~l  182 (1042)
                      |+|.++.+++...+..+..+.+|++|++++|.+++.    ++..+...++|++|+++++.+...+  .....+...+.++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~--~~~~~~~~~l~~~   80 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIP--RGLQSLLQGLTKG   80 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcc--hHHHHHHHHHHhc
Confidence            334444443333333344444455555555544322    2333334444555555444321100  0001112223334


Q ss_pred             cccccccCCCccCCCcchhhHHHhhccCCCccEEEccCCcCCCC----CCccccCC-CCCCEEECCCCCCCCC----chH
Q 001624          183 AELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGP----IHPSLAKL-QSLSVICLDQNDLSSP----VPE  253 (1042)
Q Consensus       183 ~~L~~L~L~~~~l~~~~~~~l~~l~~~~~~L~~L~L~~n~l~~~----~~~~l~~l-~~L~~L~Ls~n~l~~~----~~~  253 (1042)
                      ++|++|+++++.+.......+..+... ++|++|++++|.+++.    +...+..+ ++|+.|++++|.+++.    ++.
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            445555554444443333333333222 3455555555554421    11223344 5555555555555522    223


Q ss_pred             hhhCCCCCCEEEccCCCCCCC----chhhhhcCCCCCEEECCCCCC
Q 001624          254 FLADFFNLTSLNLSSSGLNGT----FPETILQVHTLQTLDLSGNSL  295 (1042)
Q Consensus       254 ~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~~  295 (1042)
                      .+..+++|++|++++|.+.+.    ++..+..+++|++|++++|.+
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  205 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL  205 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence            344455555555555555432    222333444555555555543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03150 hypothetical protein; Provisional

Probab=99.63  E-value=6.2e-16  Score=185.24  Aligned_cols=117  Identities=35%  Similarity=0.620  Sum_probs=104.6

Q ss_pred             cccEEEccCCcccccCcccccccCCCcEEECCCCcccccCCccccCCCCCCeEEccCCcccccccccccCCCcCCeeecc
Q 001624          863 IFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLS  942 (1042)
Q Consensus       863 ~l~~LdLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~L~~L~~L~ls  942 (1042)
                      .++.|+|++|.++|.+|.+++.+++|+.|+|++|+++|.+|+.++++++|+.|||++|+++|.+|+.+++|++|++|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCcc--cccCCcccCCCCCCCCCCCCC-CC
Q 001624          943 HNNLEGNIPVSTQL--QSFSPTSFEGNEGLCGAPLNV-CP  979 (1042)
Q Consensus       943 ~N~l~g~ip~~~~~--~~~~~~~~~gn~~lcg~~~~~-c~  979 (1042)
                      +|+++|.+|.....  .......+.||+++||.|... |.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            99999999975321  222345689999999986433 74

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.56  E-value=8.8e-17  Score=148.04  Aligned_cols=108  Identities=31%  Similarity=0.488  Sum_probs=69.9

Q ss_pred             ccCCCcEEEccCCcCccccChhHhhccCcccEEECCCCccccccCCCCCCCCCCcEEeCCCCcccccCCccccCCCCCcE
Q 001624          666 RAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEV  745 (1042)
Q Consensus       666 ~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  745 (1042)
                      ++...+.|.+|+|+++ .+|..+..+ .+|++|++++|++. ..|.+++.++.|+.|+++-|++. ..|..|+.++.|++
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l-~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAEL-KNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHh-hhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence            3445566677777776 666666665 66777777777766 34556666777777777777776 67777777777777


Q ss_pred             EECCCCcccc-ccChhhhcCCCCcEEEecCcee
Q 001624          746 LDLGNNKIRD-TFPCWLKNISSLRVLVLRSNSF  777 (1042)
Q Consensus       746 L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l  777 (1042)
                      |||.+|++.. .+|..|..++.|+.|+|++|.|
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndf  139 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF  139 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCc
Confidence            7777777653 3455555555555555555544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.54  E-value=2.8e-16  Score=144.75  Aligned_cols=180  Identities=28%  Similarity=0.528  Sum_probs=128.2

Q ss_pred             CCCCcEEeCCCCcccccCCccccCCCCCcEEECCCCccccccChhhhcCCCCcEEEecCceeeeeccCCCCCCCCCcccE
Q 001624          716 NCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQI  795 (1042)
Q Consensus       716 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i~~~~~~~~l~~L~~  795 (1042)
                      +...+.|.||+|+++ .+|..++.+.+|++|++++|++.. +|..++.++.|+.|+++-|++.-   .|..++.+|.|++
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~~---lprgfgs~p~lev  106 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLNI---LPRGFGSFPALEV  106 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhhc---CccccCCCchhhh
Confidence            344556666666666 555566667777777777777653 45566777777777777776642   2777888888888


Q ss_pred             EeccCCCCCC-CCChhhhhhhhhhcccccccccccccceeeeccccceeeeeEEEecCchhhhhhhcccccEEEccCCcc
Q 001624          796 VDIASNNFGG-RVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNF  874 (1042)
Q Consensus       796 Ldls~N~l~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~l~~LdLs~N~l  874 (1042)
                      ||+++|+++. .+|..+|                                               .++.|+.|+|+.|.|
T Consensus       107 ldltynnl~e~~lpgnff-----------------------------------------------~m~tlralyl~dndf  139 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFF-----------------------------------------------YMTTLRALYLGDNDF  139 (264)
T ss_pred             hhccccccccccCCcchh-----------------------------------------------HHHHHHHHHhcCCCc
Confidence            8888888764 2343221                                               345667788999998


Q ss_pred             cccCcccccccCCCcEEECCCCcccccCCccccCCCCCCeEEccCCcccccccccccCCCcC---CeeeccCCcccccC
Q 001624          875 DGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFL---SVLNLSHNNLEGNI  950 (1042)
Q Consensus       875 ~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~L~~L---~~L~ls~N~l~g~i  950 (1042)
                      . .+|+++|+++.|+.|.+..|.+- ..|.++|.|+.|+.|.+.+|+++- +|+.++++.-+   +++.+.+|...-+|
T Consensus       140 e-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~v-lppel~~l~l~~~k~v~r~E~NPwv~pI  215 (264)
T KOG0617|consen  140 E-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTV-LPPELANLDLVGNKQVMRMEENPWVNPI  215 (264)
T ss_pred             c-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeee-cChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence            6 78999999999999999999987 579999999999999999999984 56667765433   34455566554333

>PLN03150 hypothetical protein; Provisional

Probab=99.44  E-value=4.5e-13  Score=160.71  Aligned_cols=126  Identities=33%  Similarity=0.534  Sum_probs=105.3

Q ss_pred             CCcHHHHHHHHHHHhcCCCCCCccccccCCCCCCCCc----ccCceeeCCC-----CCEEEEECCCCCCccccCCCCCcc
Q 001624           29 QCQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSTDCC----TWCGVDCDEA-----GRVIGLDLSEESISGRIDNSSPLL   99 (1042)
Q Consensus        29 ~~~~~~~~aLl~~k~~~~~~~~~~~~l~sW~~~~~~c----~w~gv~C~~~-----~~v~~L~L~~~~l~g~~~~~~~l~   99 (1042)
                      .+.++|.+||+++|+++.. +.    ..+|+ +..||    .|.||.|...     .+|+.|+|+++.+.|.+  ++.++
T Consensus       368 ~t~~~~~~aL~~~k~~~~~-~~----~~~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~i--p~~i~  439 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGL-PL----RFGWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFI--PNDIS  439 (623)
T ss_pred             ccCchHHHHHHHHHHhcCC-cc----cCCCC-CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccC--CHHHh
Confidence            4567899999999999864 32    14896 44453    7999999532     25999999999999988  78899


Q ss_pred             cCCCCCeeeCCCCCCCCCCCCCccCCCCCCCEEECCCCCCCCCCchhhhcCCCCcEEeCCCCCC
Q 001624          100 SLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYS  163 (1042)
Q Consensus       100 ~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~  163 (1042)
                      ++++|++|+|++|.+.+. +|..++.+++|++|||++|.+.|.+|..++++++|++|++++|.+
T Consensus       440 ~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l  502 (623)
T PLN03150        440 KLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL  502 (623)
T ss_pred             CCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc
Confidence            999999999999999887 898899999999999999999999999998888888888888754

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.14  E-value=8.9e-12  Score=129.05  Aligned_cols=38  Identities=24%  Similarity=0.405  Sum_probs=22.4

Q ss_pred             CCCCCEEEccCCCCCC----CcchhccCCCCCCEEEccCCcc
Q 001624          330 LKNLSRLDLARCNLSG----SIPTSLAKLTQLVYLDLSSNKF  367 (1042)
Q Consensus       330 l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l  367 (1042)
                      .++|++|.+.+|.++.    .+...+...+.|+.|++++|.+
T Consensus       269 ~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  269 APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            4566666666666652    1222344566677777777766

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.09  E-value=6.9e-12  Score=137.11  Aligned_cols=211  Identities=29%  Similarity=0.389  Sum_probs=135.2

Q ss_pred             EEeCCCCCCCCCC---CCCCCcccEEECCCCCCCCCcChhHhhhcCCCccEEEccCCccccCCCCcccccCCCceEEecC
Q 001624          530 LRLASCKLKVIPN---LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLH  606 (1042)
Q Consensus       530 L~L~~n~l~~lp~---l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l~  606 (1042)
                      |.|++-+++.+|.   -..+..-...|++.|++. ++|..+..+.  .|+.+.+.+|.+..++.+  +..+..|+++|++
T Consensus        55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~--~Le~liLy~n~~r~ip~~--i~~L~~lt~l~ls  129 (722)
T KOG0532|consen   55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFV--SLESLILYHNCIRTIPEA--ICNLEALTFLDLS  129 (722)
T ss_pred             cccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHH--HHHHHHHHhccceecchh--hhhhhHHHHhhhc
Confidence            3344445555553   123344556788888887 6777665554  377777778877776543  3444467777777


Q ss_pred             CCcccccCCCCCCCCcEEeccCCccccCCCCCcccccccceeeecccCccccccchhhhccCCCcEEEccCCcCccccCh
Q 001624          607 SNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPT  686 (1042)
Q Consensus       607 ~N~l~~~~p~~~~~l~~l~ls~n~~~~~~p~~~~~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~  686 (1042)
                      .|+++                      .+|..+..  --|+.+.+++|+++ .+|+.++....|..||.+.|.+. .+|.
T Consensus       130 ~NqlS----------------------~lp~~lC~--lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slps  183 (722)
T KOG0532|consen  130 SNQLS----------------------HLPDGLCD--LPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPS  183 (722)
T ss_pred             cchhh----------------------cCChhhhc--CcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchH
Confidence            77765                      23333321  23566777777776 56667777777788888888876 6777


Q ss_pred             hHhhccCcccEEECCCCccccccCCCCCCCCCCcEEeCCCCcccccCCccccCCCCCcEEECCCCccccccChhhh---c
Q 001624          687 CLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLK---N  763 (1042)
Q Consensus       687 ~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~---~  763 (1042)
                      .+..+ .+|+.|+++.|++....+ .+..+ .|..||+|+|+++ .+|-.|.+++.|++|-|.+|.++. .|..+.   .
T Consensus       184 ql~~l-~slr~l~vrRn~l~~lp~-El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGk  258 (722)
T KOG0532|consen  184 QLGYL-TSLRDLNVRRNHLEDLPE-ELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGK  258 (722)
T ss_pred             HhhhH-HHHHHHHHhhhhhhhCCH-HHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccc
Confidence            77776 677778888887775443 33333 4777888888877 677778888888888888887753 344332   2


Q ss_pred             CCCCcEEEecCce
Q 001624          764 ISSLRVLVLRSNS  776 (1042)
Q Consensus       764 l~~L~~L~L~~N~  776 (1042)
                      ..=.++|+...++
T Consensus       259 VHIFKyL~~qA~q  271 (722)
T KOG0532|consen  259 VHIFKYLSTQACQ  271 (722)
T ss_pred             eeeeeeecchhcc
Confidence            3334566666653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.06  E-value=4.9e-11  Score=123.63  Aligned_cols=252  Identities=23%  Similarity=0.299  Sum_probs=134.4

Q ss_pred             CCcccCCCCCeeeCCCCCCCCC---CCCCccCCCCCCCEEECCCC---CCCCCCchhh-------hcCCCCcEEeCCCCC
Q 001624           96 SPLLSLKYLQSLNLAFNMFNAT---EIPSGLGNLTNLTHLNLSNA---GFAGQIPIQV-------SAMTRLVTLDLSSSY  162 (1042)
Q Consensus        96 ~~l~~l~~L~~L~Ls~n~~~~~---~lp~~l~~l~~L~~L~Ls~n---~~~~~~p~~l-------~~l~~L~~L~Ls~n~  162 (1042)
                      +.+..+..+++++||+|.|...   .+...+.+.++|+.-++|+-   +....+|..+       -.+++|++||||.|.
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            4566778889999999887432   13445667778888888763   1233355433       345678888888876


Q ss_pred             CCCCCcccCCCChHHHHhcCcccccccCCCccCCCcchhhHHHhhccCCCccEEEccCCcCCCCCCccccCCCCCCEEEC
Q 001624          163 SFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICL  242 (1042)
Q Consensus       163 ~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  242 (1042)
                      +..    -..+.+...+..+..|++|+|.+|.+...+...+..      .|.+|.  .+       ...+.-+.|+++..
T Consensus       104 ~G~----~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~------al~~l~--~~-------kk~~~~~~Lrv~i~  164 (382)
T KOG1909|consen  104 FGP----KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR------ALFELA--VN-------KKAASKPKLRVFIC  164 (382)
T ss_pred             cCc----cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH------HHHHHH--HH-------hccCCCcceEEEEe
Confidence            522    123456666777788888888777766544333221      011110  00       11122234444444


Q ss_pred             CCCCCCCC----chHhhhCCCCCCEEEccCCCCCCC----chhhhhcCCCCCEEECCCCCCCCCCCCCCCCCCCCcEEEc
Q 001624          243 DQNDLSSP----VPEFLADFFNLTSLNLSSSGLNGT----FPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLML  314 (1042)
Q Consensus       243 s~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L  314 (1042)
                      .+|++...    +...|...+.|+.+.+..|.+...    +...+..                        +++|+.|||
T Consensus       165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~------------------------~~~LevLdl  220 (382)
T KOG1909|consen  165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEH------------------------CPHLEVLDL  220 (382)
T ss_pred             eccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHh------------------------CCcceeeec
Confidence            44444321    122233344444444444443211    1122233                        444444444


Q ss_pred             CCccccc----cCCccccCCCCCCEEEccCCCCCCCcchhc-----cCCCCCCEEEccCCcccCCCC----c-cCCCCCc
Q 001624          315 SYANFSG----VLPDSIGNLKNLSRLDLARCNLSGSIPTSL-----AKLTQLVYLDLSSNKFVGPIP----S-LHMSKNL  380 (1042)
Q Consensus       315 ~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~l~~~~~----~-~~~~~~L  380 (1042)
                      .+|.++.    .+...+..+++|++|++++|.+...-..+|     ...|+|+.|.+.+|.++..-.    . ....+.|
T Consensus       221 ~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL  300 (382)
T KOG1909|consen  221 RDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDL  300 (382)
T ss_pred             ccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhh
Confidence            4444432    123345556677777777777764333322     236778888888887753111    0 1113778


Q ss_pred             cEEEccCCCC
Q 001624          381 THLDLSNNAL  390 (1042)
Q Consensus       381 ~~L~L~~n~l  390 (1042)
                      +.|++++|++
T Consensus       301 ~kLnLngN~l  310 (382)
T KOG1909|consen  301 EKLNLNGNRL  310 (382)
T ss_pred             HHhcCCcccc
Confidence            8888888877

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.05  E-value=1.8e-11  Score=133.99  Aligned_cols=175  Identities=28%  Similarity=0.382  Sum_probs=117.9

Q ss_pred             EeccCCccccCCCCCcccccccceeeecccCccccccchhhhccCCCcEEEccCCcCccccChhHhhccCcccEEECCCC
Q 001624          624 VDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGN  703 (1042)
Q Consensus       624 l~ls~n~~~~~~p~~~~~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N  703 (1042)
                      .|++.|+|. .+|.++. .+..|+.+.+++|.+. .+|..++++..|++|||+.|+++ .+|..++.+  -|++|-+++|
T Consensus        80 aDlsrNR~~-elp~~~~-~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l--pLkvli~sNN  153 (722)
T KOG0532|consen   80 ADLSRNRFS-ELPEEAC-AFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL--PLKVLIVSNN  153 (722)
T ss_pred             hhccccccc-cCchHHH-HHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC--cceeEEEecC
Confidence            344444444 4454433 2455666677777765 56777777777788888888777 677777765  3777777777


Q ss_pred             ccccccCCCCCCCCCCcEEeCCCCcccccCCccccCCCCCcEEECCCCccccccChhhhcCCCCcEEEecCceeeeeccC
Q 001624          704 SLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITC  783 (1042)
Q Consensus       704 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i~~  783 (1042)
                      +++ .+|+.++.+..|..||.+.|.+. .+|..++++.+|+.|.++.|++... |+.+..+ .|..||++.|++.. |  
T Consensus       154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~l-p~El~~L-pLi~lDfScNkis~-i--  226 (722)
T KOG0532|consen  154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDL-PEELCSL-PLIRLDFSCNKISY-L--  226 (722)
T ss_pred             ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhC-CHHHhCC-ceeeeecccCceee-c--
Confidence            776 45556667777777777777777 6677777777777777777777653 4444433 46777777777763 2  


Q ss_pred             CCCCCCCCcccEEeccCCCCCCCCChhh
Q 001624          784 RENDDSWPMLQIVDIASNNFGGRVPQKC  811 (1042)
Q Consensus       784 ~~~~~~l~~L~~Ldls~N~l~g~~p~~~  811 (1042)
                      |..+..+..|++|-|.+|++...--+-|
T Consensus       227 Pv~fr~m~~Lq~l~LenNPLqSPPAqIC  254 (722)
T KOG0532|consen  227 PVDFRKMRHLQVLQLENNPLQSPPAQIC  254 (722)
T ss_pred             chhhhhhhhheeeeeccCCCCCChHHHH
Confidence            6777777777777777777765433333

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.97  E-value=5.5e-10  Score=82.01  Aligned_cols=41  Identities=37%  Similarity=0.731  Sum_probs=30.6

Q ss_pred             cHHHHHHHHHHHhcCCCCCCccccccCCCCC--CCCcccCceeeC
Q 001624           31 QSDQQSLLLQMKSSLVFNSSLSFRMVQWSQS--TDCCTWCGVDCD   73 (1042)
Q Consensus        31 ~~~~~~aLl~~k~~~~~~~~~~~~l~sW~~~--~~~c~w~gv~C~   73 (1042)
                      +++|++||++||+++..++.  +.+.+|+.+  .+||+|.||+|+
T Consensus         1 ~~~d~~aLl~~k~~l~~~~~--~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    1 PNQDRQALLAFKKSLNNDPS--GVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             -HHHHHHHHHHHHCTT-SC---CCCTT--TT--S-CCCSTTEEE-
T ss_pred             CcHHHHHHHHHHHhcccccC--cccccCCCcCCCCCeeeccEEeC
Confidence            36899999999999986553  589999875  799999999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=9.1e-11  Score=124.84  Aligned_cols=212  Identities=22%  Similarity=0.225  Sum_probs=103.0

Q ss_pred             hcCCCCCEEECCCCCCCCCCCCCCCCCCCCcEEEcCCccccccCCccccCCCCCCEEEccCCCCCCC--cchhccCCCCC
Q 001624          280 LQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGS--IPTSLAKLTQL  357 (1042)
Q Consensus       280 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L  357 (1042)
                      .++.+|+...|.++........                       .....|++++.|||+.|-+..-  +......+|+|
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~-----------------------~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~L  174 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIE-----------------------EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSL  174 (505)
T ss_pred             hhHHhhhheeecCccccccchh-----------------------hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccc
Confidence            4567777777776653222211                       1233455555555555544421  11223455556


Q ss_pred             CEEEccCCcccCCCCccC--CCCCccEEEccCCCCCCCCCcccccCCCCccEEcccCcccCCcCCccccCCCCCcEEEcc
Q 001624          358 VYLDLSSNKFVGPIPSLH--MSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLA  435 (1042)
Q Consensus       358 ~~L~Ls~n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  435 (1042)
                      +.|+++.|.+........  ..+.|+.|.++.|.++..--......+|+|+.|++..|.....-......+..|++|+|+
T Consensus       175 e~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs  254 (505)
T KOG3207|consen  175 ENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS  254 (505)
T ss_pred             hhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc
Confidence            666666555543222221  125566666666665522111223456666666666664221222222334556666666


Q ss_pred             CCCCCCCCCcccccccCcCCeeecccccCCCC-CCcc-----hhccCcCCEEEccCCccccccchHHHHhcccCCeEEcc
Q 001624          436 NNKFGGPIPEFSNASYSALDTLDLSANRLEGP-IPMS-----IFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELS  509 (1042)
Q Consensus       436 ~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~p~~-----l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls  509 (1042)
                      +|++...-.......++.|+.|.++.+.+... .|+.     ...+++|++|++..|++...-....+..+++|+.|.+.
T Consensus       255 ~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~  334 (505)
T KOG3207|consen  255 NNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT  334 (505)
T ss_pred             CCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence            66655332222233455566666666555432 1211     23455666666666666433333344455555555555


Q ss_pred             Cceee
Q 001624          510 YNNLT  514 (1042)
Q Consensus       510 ~n~l~  514 (1042)
                      .|.+.
T Consensus       335 ~n~ln  339 (505)
T KOG3207|consen  335 LNYLN  339 (505)
T ss_pred             ccccc
Confidence            55544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.95  E-value=9.4e-10  Score=126.70  Aligned_cols=102  Identities=30%  Similarity=0.408  Sum_probs=53.2

Q ss_pred             EEEccCCcCccccChhHhhccCcccEEECCCCccccccCCCCCCCC-CCcEEeCCCCcccccCCccccCCCCCcEEECCC
Q 001624          672 VLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNC-GLQTLDLNENQLGGTVPKSLANCRKLEVLDLGN  750 (1042)
Q Consensus       672 ~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  750 (1042)
                      .++++.|.+...+. .+... +.++.|++.+|+++.+.+ ...... +|+.|++++|++. .+|..++.+++|+.|++++
T Consensus        97 ~l~~~~~~~~~~~~-~~~~~-~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRSNIS-ELLEL-TNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccccCch-hhhcc-cceeEEecCCcccccCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence            45555555532222 22222 345556666665553332 222232 5666666666666 4445566666666666666


Q ss_pred             CccccccChhhhcCCCCcEEEecCceee
Q 001624          751 NKIRDTFPCWLKNISSLRVLVLRSNSFY  778 (1042)
Q Consensus       751 N~l~~~~p~~l~~l~~L~~L~L~~N~l~  778 (1042)
                      |+++...+ ..+..+.|+.|++++|++.
T Consensus       173 N~l~~l~~-~~~~~~~L~~L~ls~N~i~  199 (394)
T COG4886         173 NDLSDLPK-LLSNLSNLNNLDLSGNKIS  199 (394)
T ss_pred             chhhhhhh-hhhhhhhhhheeccCCccc
Confidence            66654332 2335556666666666554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=1.5e-10  Score=123.25  Aligned_cols=208  Identities=25%  Similarity=0.235  Sum_probs=108.4

Q ss_pred             cCCCCCCEEEccCCCCCCCcc--hhccCCCCCCEEEccCCcccCCCCc---cCCCCCccEEEccCCCCCCCCCcccccCC
Q 001624          328 GNLKNLSRLDLARCNLSGSIP--TSLAKLTQLVYLDLSSNKFVGPIPS---LHMSKNLTHLDLSNNALPGAISSTDWEHL  402 (1042)
Q Consensus       328 ~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~~~~---~~~~~~L~~L~L~~n~l~~~i~~~~~~~l  402 (1042)
                      .++.+|+++.|.++.+.. .+  .....|++++.|||+.|-+....+.   ....++|+.|+++.|++........-.. 
T Consensus       118 sn~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~-  195 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL-  195 (505)
T ss_pred             hhHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh-
Confidence            467888888888887762 22  3556788888888888876542221   1122555666666555542222221223 


Q ss_pred             CCccEEcccCcccCCcCCccccCCCCCcEEEccCCCCCCCCCcccccccCcCCeeecccccCCCCCCcchhccCcCCEEE
Q 001624          403 SNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILM  482 (1042)
Q Consensus       403 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  482 (1042)
                                             ++.|+.|.++.|.++..--......+|+|+.|++..|.....-......+..|+.|+
T Consensus       196 -----------------------l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~Ld  252 (505)
T KOG3207|consen  196 -----------------------LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELD  252 (505)
T ss_pred             -----------------------hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcc
Confidence                                   344455555555444211112222355555555555532222222333445666666


Q ss_pred             ccCCccccccchHHHHhcccCCeEEccCceeeeecCCCC------CCcccccEEEeCCCCCCCCCC---CCCCCcccEEE
Q 001624          483 LSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDS------SFPSQVRTLRLASCKLKVIPN---LKSQSKLFNLD  553 (1042)
Q Consensus       483 Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~------~~~~~L~~L~L~~n~l~~lp~---l~~~~~L~~L~  553 (1042)
                      |++|++...-.....+.++.|+.|+++.+.+..+...+.      ...++|++|++..|++..++.   +..+.+|+.|.
T Consensus       253 Ls~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~  332 (505)
T KOG3207|consen  253 LSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLR  332 (505)
T ss_pred             ccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhh
Confidence            666666533333345566666666666666655443332      233456666666666655544   33344455555


Q ss_pred             CCCCCCC
Q 001624          554 LSDNQIS  560 (1042)
Q Consensus       554 Ls~N~l~  560 (1042)
                      +..|.++
T Consensus       333 ~~~n~ln  339 (505)
T KOG3207|consen  333 ITLNYLN  339 (505)
T ss_pred             ccccccc
Confidence            5555444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.82  E-value=1.1e-09  Score=107.33  Aligned_cols=128  Identities=31%  Similarity=0.342  Sum_probs=40.4

Q ss_pred             hccCCCcEEEccCCcCccccChhHhhccCcccEEECCCCccccccCCCCCCCCCCcEEeCCCCcccccCCccc-cCCCCC
Q 001624          665 CRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSL-ANCRKL  743 (1042)
Q Consensus       665 ~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L  743 (1042)
                      .++..++.|+|++|.|+ .|. .+...+.+|+.|++++|.|+...  .+..++.|++|++++|+|+.. +..+ ..+++|
T Consensus        16 ~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L   90 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNL   90 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred             ccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCcc-ccchHHhCCcC
Confidence            34456777777777776 332 33322356777777777777543  466677788888888887743 3333 357778


Q ss_pred             cEEECCCCccccccC-hhhhcCCCCcEEEecCceeeeecc-CCCCCCCCCcccEEe
Q 001624          744 EVLDLGNNKIRDTFP-CWLKNISSLRVLVLRSNSFYGSIT-CRENDDSWPMLQIVD  797 (1042)
Q Consensus       744 ~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~i~-~~~~~~~l~~L~~Ld  797 (1042)
                      ++|++++|+|...-. ..++.+++|++|+|.+|++...-. -..-+..+|+|+.||
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            888888887765322 445667777777777776643210 001233455666655

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.78  E-value=8.5e-09  Score=118.77  Aligned_cols=197  Identities=37%  Similarity=0.521  Sum_probs=85.4

Q ss_pred             EEECCCCCCCCCchHhhhCCCCCCEEEccCCCCCCCchhhhhcCC-CCCEEECCCCCCCCCCCCCCCCCCCCcEEEcCCc
Q 001624          239 VICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVH-TLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYA  317 (1042)
Q Consensus       239 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n  317 (1042)
                      .+++..+.+... ...+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+..                    
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~--------------------  154 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES--------------------  154 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh--------------------
Confidence            344444444322 122334455566666655555 3444444442 55555555554322                    


Q ss_pred             cccccCCccccCCCCCCEEEccCCCCCCCcchhccCCCCCCEEEccCCcccCCCCccCCCCCccEEEccCCCCCCCCCcc
Q 001624          318 NFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISST  397 (1042)
Q Consensus       318 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~i~~~  397 (1042)
                           +|..++.+++|+.|++++|++. .+|...+..+.|+.|++++|++....+.......|+++.+++|+.. .++..
T Consensus       155 -----l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~  227 (394)
T COG4886         155 -----LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSS  227 (394)
T ss_pred             -----hhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchh
Confidence                 1223334444444444444443 2232222344444444444444322111112233444444444321 11111


Q ss_pred             cccCCCCccEEcccCcccCCcCCccccCCCCCcEEEccCCCCCCCCCcccccccCcCCeeecccccCCCCCC
Q 001624          398 DWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIP  469 (1042)
Q Consensus       398 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p  469 (1042)
                       +.+++++..+.+.+|++. .++..+..++.++.|++++|.++. ++.  .....+++.|++++|.+....|
T Consensus       228 -~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~--~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         228 -LSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS--LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             -hhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc--ccccCccCEEeccCccccccch
Confidence             444555555555555544 224444555555555555555552 222  2334556666666665554444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.77  E-value=1.5e-09  Score=109.70  Aligned_cols=104  Identities=37%  Similarity=0.448  Sum_probs=69.4

Q ss_pred             CcCCeeecccccCCCCCCcchhccCcCCEEEccCCccccccchHHHHhcccCCeEEccCceeeeecCCCCCCcccccEEE
Q 001624          452 SALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLR  531 (1042)
Q Consensus       452 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~  531 (1042)
                      ..|+++|+|+|.++ .+..+..-.|.++.|++++|.+. .+.  .+..+++|+.||+|+|.++....+....- ++++|.
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLG-NIKtL~  358 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGNLLAECVGWHLKLG-NIKTLK  358 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh--hhhhcccceEeecccchhHhhhhhHhhhc-CEeeee
Confidence            44556666666555 34445556677777777777776 332  36677777777777777776555543333 677778


Q ss_pred             eCCCCCCCCCCCCCCCcccEEECCCCCCC
Q 001624          532 LASCKLKVIPNLKSQSKLFNLDLSDNQIS  560 (1042)
Q Consensus       532 L~~n~l~~lp~l~~~~~L~~L~Ls~N~l~  560 (1042)
                      +++|.+..+..+..+-+|..||+++|+|.
T Consensus       359 La~N~iE~LSGL~KLYSLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  359 LAQNKIETLSGLRKLYSLVNLDLSSNQIE  387 (490)
T ss_pred             hhhhhHhhhhhhHhhhhheeccccccchh
Confidence            88887777777777777777777777765

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.70  E-value=1.2e-08  Score=82.21  Aligned_cols=60  Identities=42%  Similarity=0.551  Sum_probs=37.7

Q ss_pred             CCcEEECCCCcccccCCccccCCCCCCeEEccCCcccccccccccCCCcCCeeeccCCcc
Q 001624          887 SLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNL  946 (1042)
Q Consensus       887 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~L~~L~~L~ls~N~l  946 (1042)
                      +|+.|++++|+++...+..|..+++|++||+++|+++...|..|.+++.|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455666666666655555666666666666666666666666666666666666666654

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.69  E-value=6.6e-09  Score=105.07  Aligned_cols=127  Identities=30%  Similarity=0.436  Sum_probs=67.0

Q ss_pred             CCccEEcccCcccCCcCCccccCCCCCcEEEccCCCCCCCCCcccccccCcCCeeecccccCCCCCCcchhccCcCCEEE
Q 001624          403 SNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILM  482 (1042)
Q Consensus       403 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  482 (1042)
                      ..|+++||++|.|+ .+.++..-.|.++.|+++.|.+.. +..  .+.+++|+.||+|+|.++ .+..+-..+.++++|.
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~n--La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQN--LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK  358 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceee-ehh--hhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence            34555566665555 344444445555555555555441 111  123455555555555544 2222333444555555


Q ss_pred             ccCCccccccchHHHHhcccCCeEEccCceeeeecCCCCCCcccccEEEeCCCCCCCCC---CCCCCCcccEEECCCCCC
Q 001624          483 LSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIP---NLKSQSKLFNLDLSDNQI  559 (1042)
Q Consensus       483 Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~lp---~l~~~~~L~~L~Ls~N~l  559 (1042)
                      +++|.+. .  ...+.++-+|..                        |++++|+|..+.   .+++++.|+++.+.+|.+
T Consensus       359 La~N~iE-~--LSGL~KLYSLvn------------------------LDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  359 LAQNKIE-T--LSGLRKLYSLVN------------------------LDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             hhhhhHh-h--hhhhHhhhhhee------------------------ccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            5555553 1  123444444444                        444555444333   378888899999999988


Q ss_pred             CC
Q 001624          560 SG  561 (1042)
Q Consensus       560 ~~  561 (1042)
                      .+
T Consensus       412 ~~  413 (490)
T KOG1259|consen  412 AG  413 (490)
T ss_pred             cc
Confidence            84

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.68  E-value=1.5e-08  Score=81.52  Aligned_cols=58  Identities=36%  Similarity=0.500  Sum_probs=26.4

Q ss_pred             ccEEECCCCccccccCCCCCCCCCCcEEeCCCCcccccCCccccCCCCCcEEECCCCc
Q 001624          695 LGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNK  752 (1042)
Q Consensus       695 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  752 (1042)
                      |++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4444444444444444444444444444444444444444444444444444444443

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.67  E-value=3.5e-08  Score=96.86  Aligned_cols=111  Identities=26%  Similarity=0.293  Sum_probs=43.8

Q ss_pred             HhcccCCeEEccCceeeeecCCCCCCcccccEEEeCCCCCCCCCCCCCCCcccEEECCCCCCCCCcChhHhhhcCCCccE
Q 001624          498 QRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEY  577 (1042)
Q Consensus       498 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~lp~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~  577 (1042)
                      .+..++++|+|++|.|+.+..-. ....+|+.|++++|.|+.++.+..++.|++|++++|+|+. ++..+.. ..++|+.
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie~L~-~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~-i~~~l~~-~lp~L~~   92 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIENLG-ATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISS-ISEGLDK-NLPNLQE   92 (175)
T ss_dssp             --------------------S---TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S--CHHHHH-H-TT--E
T ss_pred             ccccccccccccccccccccchh-hhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCc-cccchHH-hCCcCCE
Confidence            34455666666666666554322 2345788888888888888888899999999999999985 4443332 2357999


Q ss_pred             EEccCCccccCCCCcccccCCCceEEecCCCccc
Q 001624          578 LNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQ  611 (1042)
Q Consensus       578 L~Ls~N~l~~~~~~~~~~~l~~L~~L~l~~N~l~  611 (1042)
                      |++++|+|..+.....+..+++|+.|++.+|++.
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            9999999999887777888899999999999886

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=1.6e-09  Score=109.57  Aligned_cols=163  Identities=23%  Similarity=0.244  Sum_probs=100.3

Q ss_pred             CCCeeeCCCCCCCCCCCCCccCCCCCCCEEECCCCCCCCCCchhhhcCCCCcEEeCCCCCCCCCCcccCCCChHHHHhcC
Q 001624          103 YLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNL  182 (1042)
Q Consensus       103 ~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~~l~~l  182 (1042)
                      .|++||||+..++...+-..+..|.+|+.|.|.++++.+.+...+.+-.+|+.|+++.+.      .+...+..-.+.++
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s------G~t~n~~~ll~~sc  259 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS------GFTENALQLLLSSC  259 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc------ccchhHHHHHHHhh
Confidence            488888888777655455556778888888888888888777788888888888888764      33444555567777


Q ss_pred             cccccccCCCccCCCcchhhHHHhhccCCCccEEEccCCcCCCCCCccccCCCCCCEEECCCCCCCCCchHhhhCCCCCC
Q 001624          183 AELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLT  262 (1042)
Q Consensus       183 ~~L~~L~L~~~~l~~~~~~~l~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  262 (1042)
                      +.|.+|+++.|.+.......  .+...-++|+.|+++++.-.                     -....+..-...+++|.
T Consensus       260 s~L~~LNlsWc~l~~~~Vtv--~V~hise~l~~LNlsG~rrn---------------------l~~sh~~tL~~rcp~l~  316 (419)
T KOG2120|consen  260 SRLDELNLSWCFLFTEKVTV--AVAHISETLTQLNLSGYRRN---------------------LQKSHLSTLVRRCPNLV  316 (419)
T ss_pred             hhHhhcCchHhhccchhhhH--HHhhhchhhhhhhhhhhHhh---------------------hhhhHHHHHHHhCCcee
Confidence            77777777777654432211  12222245555555554211                     00111222234566777


Q ss_pred             EEEccCCC-CCCCchhhhhcCCCCCEEECCCCC
Q 001624          263 SLNLSSSG-LNGTFPETILQVHTLQTLDLSGNS  294 (1042)
Q Consensus       263 ~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~  294 (1042)
                      +|||++|. ++......+.+++.|++|.++.|.
T Consensus       317 ~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  317 HLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             eeccccccccCchHHHHHHhcchheeeehhhhc
Confidence            77776653 333444556677777777777775

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.58  E-value=1e-08  Score=118.22  Aligned_cols=245  Identities=25%  Similarity=0.238  Sum_probs=135.2

Q ss_pred             cccceeeecccCccccccchhhhccCCCcEEEccCCcCccccChhHhhccCcccEEECCCCccccccCCCCCCCCCCcEE
Q 001624          643 MNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTL  722 (1042)
Q Consensus       643 ~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  722 (1042)
                      +..+..+.+..|.+.. +-..++.+++|..|++.+|++.. +...+..+ .+|++|++++|+|+...+  +..++.|+.|
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~-~~L~~L~ls~N~I~~i~~--l~~l~~L~~L  145 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSL-VNLQVLDLSFNKITKLEG--LSTLTLLKEL  145 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhh-hcchheeccccccccccc--hhhccchhhh
Confidence            3444455556665553 22235566777777777777763 33222332 567777777777776544  3344557777


Q ss_pred             eCCCCcccccCCccccCCCCCcEEECCCCccccccC-hhhhcCCCCcEEEecCceeeeeccCCCCCCCCCcccEEeccCC
Q 001624          723 DLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFP-CWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASN  801 (1042)
Q Consensus       723 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~i~~~~~~~~l~~L~~Ldls~N  801 (1042)
                      ++++|.++..  ..+..++.|+.+++++|++...-+ . ...+.+++.+++.+|.+..    ......+..+..+++..|
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~----i~~~~~~~~l~~~~l~~n  218 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE----IEGLDLLKKLVLLSLLDN  218 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc----ccchHHHHHHHHhhcccc
Confidence            7777777632  334456777777777777765544 2 4566667777777776532    222333333333444444


Q ss_pred             CCCCCCChhhhhhhhhhcccccccccccccceeeeccccceeeeeEEEecCchhhhhhhcc--cccEEEccCCcccccCc
Q 001624          802 NFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILS--IFTSIDFSRNNFDGPIP  879 (1042)
Q Consensus       802 ~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~--~l~~LdLs~N~l~g~ip  879 (1042)
                      .++-.-+                                            ..     .+.  .++.+++++|.+. .+|
T Consensus       219 ~i~~~~~--------------------------------------------l~-----~~~~~~L~~l~l~~n~i~-~~~  248 (414)
T KOG0531|consen  219 KISKLEG--------------------------------------------LN-----ELVMLHLRELYLSGNRIS-RSP  248 (414)
T ss_pred             cceeccC--------------------------------------------cc-----cchhHHHHHHhcccCccc-ccc
Confidence            4421100                                            00     001  2556666777665 333


Q ss_pred             ccccccCCCcEEECCCCcccccCCccccCCCCCCeEEccCCcccc---ccccc-ccCCCcCCeeeccCCcccccCC
Q 001624          880 EKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSD---QIPIQ-LANLTFLSVLNLSHNNLEGNIP  951 (1042)
Q Consensus       880 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g---~ip~~-l~~L~~L~~L~ls~N~l~g~ip  951 (1042)
                      ..+..+..+..|+++.|+++..  ..+.....+..+.++.|.+..   ..... .+....+....+.+|......+
T Consensus       249 ~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  249 EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             ccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            5556666677777777776543  223444556666666666552   11221 4556667777777777666554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.57  E-value=3.8e-08  Score=120.76  Aligned_cols=249  Identities=23%  Similarity=0.226  Sum_probs=122.3

Q ss_pred             CCCCEEECCCCC--CCCCchHhhhCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEECCCCCCCCCCCCCCCCCCCCcEE
Q 001624          235 QSLSVICLDQND--LSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTL  312 (1042)
Q Consensus       235 ~~L~~L~Ls~n~--l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L  312 (1042)
                      ++|++|-+.+|.  +.....+.|..++.|+.|||++|.-.+.+|..++.+-+||+|++++..+.. -...+..+..|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH-LPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc-cchHHHHHHhhhee
Confidence            356666666664  344444456666666666666665555666666666666666666665431 11234556666666


Q ss_pred             EcCCccccccCCccccCCCCCCEEEccCCCCC--CCcchhccCCCCCCEEEccCCcccCCCCccCCCCC----ccEEEcc
Q 001624          313 MLSYANFSGVLPDSIGNLKNLSRLDLARCNLS--GSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKN----LTHLDLS  386 (1042)
Q Consensus       313 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~----L~~L~L~  386 (1042)
                      ++..+.....+|.....+++|++|.+......  ...-..+.++..|+.+....... .........+.    .+.+.+.
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~  702 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIE  702 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhc
Confidence            66666544445555556777777777654321  22223444555555555533322 11111111122    2233322


Q ss_pred             CCCCCCCCCcccccCCCCccEEcccCcccCCcCCccccC------CCCCcEEEccCCCCCCCCCcccccccCcCCeeecc
Q 001624          387 NNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFS------IPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLS  460 (1042)
Q Consensus       387 ~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls  460 (1042)
                      ++... .... .+..+.+|+.|.+.++.+......+...      ++++..+.+.++.....+...  ...++|+.|.+.
T Consensus       703 ~~~~~-~~~~-~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~--~f~~~L~~l~l~  778 (889)
T KOG4658|consen  703 GCSKR-TLIS-SLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL--LFAPHLTSLSLV  778 (889)
T ss_pred             ccccc-eeec-ccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh--hccCcccEEEEe
Confidence            23322 1112 2566777777777777765332222111      223333333333222111111  124667777776


Q ss_pred             cccCCCCCCcchhccCcCCEEEccCCccc
Q 001624          461 ANRLEGPIPMSIFELKNLKILMLSSNKLN  489 (1042)
Q Consensus       461 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  489 (1042)
                      .+.....+......+..++.+.+..+.+.
T Consensus       779 ~~~~~e~~i~~~k~~~~l~~~i~~f~~~~  807 (889)
T KOG4658|consen  779 SCRLLEDIIPKLKALLELKELILPFNKLE  807 (889)
T ss_pred             cccccccCCCHHHHhhhcccEEecccccc
Confidence            66655544444444555554444444443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.56  E-value=4.2e-08  Score=120.42  Aligned_cols=270  Identities=23%  Similarity=0.278  Sum_probs=153.0

Q ss_pred             CCEEEEECCCCCC-ccccCCCCCcccCCCCCeeeCCCCCCCCCCCCCccCCCCCCCEEECCCCCCCCCCchhhhcCCCCc
Q 001624           76 GRVIGLDLSEESI-SGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLV  154 (1042)
Q Consensus        76 ~~v~~L~L~~~~l-~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~  154 (1042)
                      ..++.|=+.++.. -..+ +...+..++.|++|||++|. .+.++|+.++.|-+||+||++++.+. .+|..+++++.|.
T Consensus       545 ~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~-~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~  621 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNS-SLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI  621 (889)
T ss_pred             CccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCC-ccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence            3566777666542 1222 02236679999999999864 44459999999999999999999998 8999999999999


Q ss_pred             EEeCCCCCCCCCCcccCCCChHHHHhcCcccccccCCCccCCCcchhhHHHhhccCCCccEEEccCCcCCCCCCccccCC
Q 001624          155 TLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKL  234 (1042)
Q Consensus       155 ~L~Ls~n~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~l  234 (1042)
                      +||+..+...        ...+.....+++||+|.+..... ..+...+..+..+ .+|+.+.......  .+-..+..+
T Consensus       622 ~Lnl~~~~~l--------~~~~~i~~~L~~Lr~L~l~~s~~-~~~~~~l~el~~L-e~L~~ls~~~~s~--~~~e~l~~~  689 (889)
T KOG4658|consen  622 YLNLEVTGRL--------ESIPGILLELQSLRVLRLPRSAL-SNDKLLLKELENL-EHLENLSITISSV--LLLEDLLGM  689 (889)
T ss_pred             eecccccccc--------ccccchhhhcccccEEEeecccc-ccchhhHHhhhcc-cchhhheeecchh--HhHhhhhhh
Confidence            9999986521        12245577799999998876652 2222233333333 6666666544332  111122222


Q ss_pred             CCCC----EEECCCCCCCCCchHhhhCCCCCCEEEccCCCCCCCchhhhhc------CCCCCEEECCCCCCCCCCCCCC-
Q 001624          235 QSLS----VICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQ------VHTLQTLDLSGNSLLRGSLPDF-  303 (1042)
Q Consensus       235 ~~L~----~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~Ls~n~~~~~~~~~~-  303 (1042)
                      +.|.    .+.+.++... ..+..+..+.+|+.|.+.++.+..........      ++++..+...++..  ...+.+ 
T Consensus       690 ~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~--~r~l~~~  766 (889)
T KOG4658|consen  690 TRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHM--LRDLTWL  766 (889)
T ss_pred             HHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccc--ccccchh
Confidence            3222    2222222222 23445667777888888777765322111110      12222222222211  111111 


Q ss_pred             CCCCCCcEEEcCCccccccCCccccCCCCCCEEEccCCCCCCC-cchhccCCCCCCEEEcc
Q 001624          304 PKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGS-IPTSLAKLTQLVYLDLS  363 (1042)
Q Consensus       304 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls  363 (1042)
                      ...++|+.|.+..+.....+.+....+..++.+.+..+.+.+. .-...+.++++..+.++
T Consensus       767 ~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~  827 (889)
T KOG4658|consen  767 LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS  827 (889)
T ss_pred             hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccC
Confidence            2356777777777766555555555555566555666655544 23334444444444443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.47  E-value=2.7e-08  Score=114.67  Aligned_cols=175  Identities=29%  Similarity=0.370  Sum_probs=90.4

Q ss_pred             ccCCCCCCEEECCCCCCCCCchHhhhCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEECCCCCCCCCCCCCCCCCCCCc
Q 001624          231 LAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLR  310 (1042)
Q Consensus       231 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~  310 (1042)
                      +..+++|+.|++.+|.+.... ..+..+++|++|++++|.++...+  +..++.|+.|++++|.+..  +..+..+..|+
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~  165 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISD--ISGLESLKSLK  165 (414)
T ss_pred             cccccceeeeeccccchhhcc-cchhhhhcchheeccccccccccc--hhhccchhhheeccCcchh--ccCCccchhhh
Confidence            555666666666666665431 114556666666666666653322  3444556666666665432  33344456666


Q ss_pred             EEEcCCccccccCC-ccccCCCCCCEEEccCCCCCCCcchhccCCCCCCEEEccCCcccCCCCccCCCCC--ccEEEccC
Q 001624          311 TLMLSYANFSGVLP-DSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKN--LTHLDLSN  387 (1042)
Q Consensus       311 ~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~--L~~L~L~~  387 (1042)
                      .+++++|.++..-+ . ...+.+++.+++.+|.+..  ...+..+..+..+++..|.++.. ........  |+.+++++
T Consensus       166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~-~~l~~~~~~~L~~l~l~~  241 (414)
T KOG0531|consen  166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKL-EGLNELVMLHLRELYLSG  241 (414)
T ss_pred             cccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceec-cCcccchhHHHHHHhccc
Confidence            66666666654433 1 3556666666666666652  22333344444445555555421 11111122  55666666


Q ss_pred             CCCCCCCCcccccCCCCccEEcccCcccC
Q 001624          388 NALPGAISSTDWEHLSNLVYVDLRNNALN  416 (1042)
Q Consensus       388 n~l~~~i~~~~~~~l~~L~~L~L~~n~l~  416 (1042)
                      |++. .++. .+..+..+..+++.+|.+.
T Consensus       242 n~i~-~~~~-~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  242 NRIS-RSPE-GLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             Cccc-cccc-cccccccccccchhhcccc
Confidence            6554 2211 1445555555665555554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.37  E-value=1.2e-07  Score=95.00  Aligned_cols=190  Identities=21%  Similarity=0.242  Sum_probs=107.6

Q ss_pred             HHHhcCcccccccCCCccCCCcchhhHHHhhccCCCccEEEccCCcCCCC----C-------CccccCCCCCCEEECCCC
Q 001624          177 GLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGP----I-------HPSLAKLQSLSVICLDQN  245 (1042)
Q Consensus       177 ~~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~~~~~L~~L~L~~n~l~~~----~-------~~~l~~l~~L~~L~Ls~n  245 (1042)
                      +.+..+..+.+++++||.+.....+|+...-.-..+|+..+++.-. +|.    +       .+.+.+|++|++.+||+|
T Consensus        24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN  102 (388)
T COG5238          24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN  102 (388)
T ss_pred             HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence            3345566777777777777766666665443333777777776532 221    1       245678889999999999


Q ss_pred             CCCCCchHh----hhCCCCCCEEEccCCCCCCC----chhhh---------hcCCCCCEEECCCCCCCCCCCCC----CC
Q 001624          246 DLSSPVPEF----LADFFNLTSLNLSSSGLNGT----FPETI---------LQVHTLQTLDLSGNSLLRGSLPD----FP  304 (1042)
Q Consensus       246 ~l~~~~~~~----l~~l~~L~~L~L~~n~l~~~----~p~~l---------~~l~~L~~L~Ls~n~~~~~~~~~----~~  304 (1042)
                      .+....|+.    +++-+.|++|.+++|.+...    +..++         ..-+.|++.+...|++..++...    +.
T Consensus       103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~  182 (388)
T COG5238         103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLE  182 (388)
T ss_pred             ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHH
Confidence            887665543    45677899999998887522    22222         23466777777777665544321    22


Q ss_pred             CCCCCcEEEcCCccccccC-----CccccCCCCCCEEEccCCCCCCC----cchhccCCCCCCEEEccCCcc
Q 001624          305 KNSSLRTLMLSYANFSGVL-----PDSIGNLKNLSRLDLARCNLSGS----IPTSLAKLTQLVYLDLSSNKF  367 (1042)
Q Consensus       305 ~l~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l  367 (1042)
                      .-..|+++.+..|.|.-.-     -..+..+.+|+.||+.+|.++..    +..++...+.|+.|.+..|-+
T Consensus       183 sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll  254 (388)
T COG5238         183 SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL  254 (388)
T ss_pred             hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence            2245566666655443110     11223455566666666655421    122333344455555555544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.29  E-value=5.1e-08  Score=110.02  Aligned_cols=177  Identities=28%  Similarity=0.349  Sum_probs=127.3

Q ss_pred             ccCCCCccEEcccCcccCCcCCccccCC-CCCcEEEccCCCCC----------CCCCcccccccCcCCeeecccccCCCC
Q 001624          399 WEHLSNLVYVDLRNNALNGSIPRSLFSI-PMLQQLLLANNKFG----------GPIPEFSNASYSALDTLDLSANRLEGP  467 (1042)
Q Consensus       399 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~----------~~~~~~~~~~~~~L~~L~Ls~n~l~~~  467 (1042)
                      +..+.+|++|.+.++.+..  ...+..+ .+|++|-. .|.+.          |.+...  .....|...+.++|.+. .
T Consensus       105 ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns--~~Wn~L~~a~fsyN~L~-~  178 (1096)
T KOG1859|consen  105 IFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNS--PVWNKLATASFSYNRLV-L  178 (1096)
T ss_pred             eccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccc--hhhhhHhhhhcchhhHH-h
Confidence            6677889999999888753  1112111 13333322 11111          111100  01345778888999887 5


Q ss_pred             CCcchhccCcCCEEEccCCccccccchHHHHhcccCCeEEccCceeeeecCCCCCCcccccEEEeCCCCCCCCCCCCCCC
Q 001624          468 IPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQS  547 (1042)
Q Consensus       468 ~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~lp~l~~~~  547 (1042)
                      ...++.-++.|+.|+|++|+++. +  +.+..+++|++|||++|.++.++......+ .|+.|.+++|.++++-++.++.
T Consensus       179 mD~SLqll~ale~LnLshNk~~~-v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL~gie~Lk  254 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNKFTK-V--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTLRGIENLK  254 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhhhhh-h--HHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhhhhHHhhh
Confidence            66678888999999999999973 3  478999999999999999998887776666 4999999999999999999999


Q ss_pred             cccEEECCCCCCCCCcC-hhHhhhcCCCccEEEccCCcccc
Q 001624          548 KLFNLDLSDNQISGEIP-NWVWEIGNGGLEYLNLSHNLLSS  587 (1042)
Q Consensus       548 ~L~~L~Ls~N~l~~~~p-~~~~~~~~~~L~~L~Ls~N~l~~  587 (1042)
                      +|+.||+++|-+.+.-. ..+|.+.  .|+.|+|.+|.+-.
T Consensus       255 sL~~LDlsyNll~~hseL~pLwsLs--~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  255 SLYGLDLSYNLLSEHSELEPLWSLS--SLIVLWLEGNPLCC  293 (1096)
T ss_pred             hhhccchhHhhhhcchhhhHHHHHH--HHHHHhhcCCcccc
Confidence            99999999998875321 1233332  48999999998764

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.28  E-value=8.8e-08  Score=102.01  Aligned_cols=84  Identities=24%  Similarity=0.338  Sum_probs=38.0

Q ss_pred             CCCCcEEEcCCcccc--ccCCccccCCCCCCEEEccCCCCCCCc-----chhccCCCCCCEEEccCCcccCC--CCccCC
Q 001624          306 NSSLRTLMLSYANFS--GVLPDSIGNLKNLSRLDLARCNLSGSI-----PTSLAKLTQLVYLDLSSNKFVGP--IPSLHM  376 (1042)
Q Consensus       306 l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~-----p~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~  376 (1042)
                      ++.|+.+++..+...  +.+...-.+++.|++|.++++......     ...-..+..|+.+.+++++....  ......
T Consensus       345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~  424 (483)
T KOG4341|consen  345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI  424 (483)
T ss_pred             ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence            455555555544322  111111234556666666655432111     11122345566666666654321  122233


Q ss_pred             CCCccEEEccCCC
Q 001624          377 SKNLTHLDLSNNA  389 (1042)
Q Consensus       377 ~~~L~~L~L~~n~  389 (1042)
                      +++|+.+++-.++
T Consensus       425 c~~Leri~l~~~q  437 (483)
T KOG4341|consen  425 CRNLERIELIDCQ  437 (483)
T ss_pred             Ccccceeeeechh
Confidence            3566666666654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=3.7e-08  Score=99.89  Aligned_cols=183  Identities=24%  Similarity=0.251  Sum_probs=124.4

Q ss_pred             CCEEEEECCCCCCccc-cCCCCCcccCCCCCeeeCCCCCCCCCCCCCccCCCCCCCEEECCCCC-CCCC-CchhhhcCCC
Q 001624           76 GRVIGLDLSEESISGR-IDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAG-FAGQ-IPIQVSAMTR  152 (1042)
Q Consensus        76 ~~v~~L~L~~~~l~g~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~-~~~~-~p~~l~~l~~  152 (1042)
                      .||..+||+...++-. +  -.-+..+..|+.|.|.++.+.+. +...+.+-.+|+.|||+.|. |+.. .-.-+.+|+.
T Consensus       185 sRlq~lDLS~s~it~stl--~~iLs~C~kLk~lSlEg~~LdD~-I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~  261 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTL--HGILSQCSKLKNLSLEGLRLDDP-IVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR  261 (419)
T ss_pred             hhhHHhhcchhheeHHHH--HHHHHHHHhhhhccccccccCcH-HHHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence            4678888888776632 1  12356789999999999999876 77788999999999999975 4422 2234578999


Q ss_pred             CcEEeCCCCCCCCCCcccCCCChHHHHhc-CcccccccCCCccCCCcchhhHHHhhccCCCccEEEccCCc-CCCCCCcc
Q 001624          153 LVTLDLSSSYSFGGPLKLENPNLSGLLQN-LAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCY-LSGPIHPS  230 (1042)
Q Consensus       153 L~~L~Ls~n~~~~~~~~~~~~~l~~~l~~-l~~L~~L~L~~~~l~~~~~~~l~~l~~~~~~L~~L~L~~n~-l~~~~~~~  230 (1042)
                      |+.|+++.|..+...+.       ..+.+ -++|+.|+++|+.- ..+...++.+...+|+|.+|||++|. ++......
T Consensus       262 L~~LNlsWc~l~~~~Vt-------v~V~hise~l~~LNlsG~rr-nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~  333 (419)
T KOG2120|consen  262 LDELNLSWCFLFTEKVT-------VAVAHISETLTQLNLSGYRR-NLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE  333 (419)
T ss_pred             HhhcCchHhhccchhhh-------HHHhhhchhhhhhhhhhhHh-hhhhhHHHHHHHhCCceeeeccccccccCchHHHH
Confidence            99999999976443322       22333 25688899998742 12233556666677999999999875 33333355


Q ss_pred             ccCCCCCCEEECCCCCCCCCchHh---hhCCCCCCEEEccCCCC
Q 001624          231 LAKLQSLSVICLDQNDLSSPVPEF---LADFFNLTSLNLSSSGL  271 (1042)
Q Consensus       231 l~~l~~L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~L~~n~l  271 (1042)
                      +.+++.|++|.++.|..  .+|..   +...+.|.+|++.++--
T Consensus       334 ~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  334 FFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             HHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccC
Confidence            66777777777777753  34443   34556677777666543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.18  E-value=9.9e-08  Score=107.74  Aligned_cols=180  Identities=31%  Similarity=0.340  Sum_probs=127.4

Q ss_pred             CccccCCCCCCEEEccCCCCCCCcchhccCC-CCCCEEEccCCcc----------cCCCCccCCCCCccEEEccCCCCCC
Q 001624          324 PDSIGNLKNLSRLDLARCNLSGSIPTSLAKL-TQLVYLDLSSNKF----------VGPIPSLHMSKNLTHLDLSNNALPG  392 (1042)
Q Consensus       324 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l----------~~~~~~~~~~~~L~~L~L~~n~l~~  392 (1042)
                      |-.+..+.+|++|.+.++.+..  ...+..+ ..|++|-- .|.+          .|.+.....-..|...+.+.|.+. 
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence            5567788999999999998863  1112111 13444422 1211          122222222256778888888875 


Q ss_pred             CCCcccccCCCCccEEcccCcccCCcCCccccCCCCCcEEEccCCCCCCCCCcccccccCcCCeeecccccCCCCCCcch
Q 001624          393 AISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSI  472 (1042)
Q Consensus       393 ~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l  472 (1042)
                      ..... +.-++.|+.|+|+.|+++..  ..+..++.|++|||+.|.+. .+|.+....+. |..|.+++|.++..  ..+
T Consensus       178 ~mD~S-Lqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gi  250 (1096)
T KOG1859|consen  178 LMDES-LQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGI  250 (1096)
T ss_pred             hHHHH-HHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhH
Confidence            33333 78888999999999998743  36778899999999999887 56666555555 89999999988743  357


Q ss_pred             hccCcCCEEEccCCccccccchHHHHhcccCCeEEccCceee
Q 001624          473 FELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLT  514 (1042)
Q Consensus       473 ~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~  514 (1042)
                      .++.+|+.||+++|-+.+.-....+..+..|+.|+|.+|.+-
T Consensus       251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            888999999999998887777777888888999999998765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.17  E-value=4.5e-07  Score=91.00  Aligned_cols=217  Identities=18%  Similarity=0.174  Sum_probs=132.1

Q ss_pred             CCEEEEECCCCCCccccC--CCCCcccCCCCCeeeCCCCCCCCC---CCC-------CccCCCCCCCEEECCCCCCCCCC
Q 001624           76 GRVIGLDLSEESISGRID--NSSPLLSLKYLQSLNLAFNMFNAT---EIP-------SGLGNLTNLTHLNLSNAGFAGQI  143 (1042)
Q Consensus        76 ~~v~~L~L~~~~l~g~~~--~~~~l~~l~~L~~L~Ls~n~~~~~---~lp-------~~l~~l~~L~~L~Ls~n~~~~~~  143 (1042)
                      ..++++||||+.+..+-.  ....+.+-++|+..++|.-. ++.   ++|       ..+-+|++|+..+||.|.|....
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            458889999988763310  02345566788888887542 221   123       34567899999999999988777


Q ss_pred             chhh----hcCCCCcEEeCCCCCCCCCCcccCC-------CChHHHHhcCcccccccCCCccCCCcchhhHHHhhccCCC
Q 001624          144 PIQV----SAMTRLVTLDLSSSYSFGGPLKLEN-------PNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPK  212 (1042)
Q Consensus       144 p~~l----~~l~~L~~L~Ls~n~~~~~~~~~~~-------~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~~~~~  212 (1042)
                      |..+    ++-+.|.+|.+++|.+..  .....       ....+..++-+.|+...+..|++........+.....-..
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp--~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~  186 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGP--IAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN  186 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCc--cchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence            7544    566789999998886521  11110       0112224566778888888888766665554444333257


Q ss_pred             ccEEEccCCcCCCCC-----CccccCCCCCCEEECCCCCCCCC----chHhhhCCCCCCEEEccCCCCCCCchhhh----
Q 001624          213 LRVLSLSSCYLSGPI-----HPSLAKLQSLSVICLDQNDLSSP----VPEFLADFFNLTSLNLSSSGLNGTFPETI----  279 (1042)
Q Consensus       213 L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~p~~l----  279 (1042)
                      |+++.+..|.+....     ...+..+.+|+.||+.+|.++..    +...++..+.|+.|.+..|-++..-..++    
T Consensus       187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f  266 (388)
T COG5238         187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF  266 (388)
T ss_pred             ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh
Confidence            888888888765331     12345567788888888877643    23344555667777777776654322222    


Q ss_pred             h--cCCCCCEEECCCCCC
Q 001624          280 L--QVHTLQTLDLSGNSL  295 (1042)
Q Consensus       280 ~--~l~~L~~L~Ls~n~~  295 (1042)
                      .  ..++|+.|...+|..
T Consensus       267 ~e~~~p~l~~L~~~Yne~  284 (388)
T COG5238         267 NEKFVPNLMPLPGDYNER  284 (388)
T ss_pred             hhhcCCCccccccchhhh
Confidence            1  245566666665543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=1.3e-06  Score=88.84  Aligned_cols=186  Identities=20%  Similarity=0.195  Sum_probs=113.4

Q ss_pred             CCCCCEEEccCCCCCC--CcchhccCCCCCCEEEccCCcccCCCCccC-CCCCccEEEccCCCCCCCCCcccccCCCCcc
Q 001624          330 LKNLSRLDLARCNLSG--SIPTSLAKLTQLVYLDLSSNKFVGPIPSLH-MSKNLTHLDLSNNALPGAISSTDWEHLSNLV  406 (1042)
Q Consensus       330 l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~  406 (1042)
                      ++.++++||.+|.++.  .+...+.++|.|+.|+++.|++...|.... ...+|+.|-|.+..+.-.-....+..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            4556666666666652  233445677777777777777776665553 3377888888777765444444467788888


Q ss_pred             EEcccCcccCCcC--Ccccc-CCCCCcEEEccCCCCCCCCC-cccccccCcCCeeecccccCCCC-CCcchhccCcCCEE
Q 001624          407 YVDLRNNALNGSI--PRSLF-SIPMLQQLLLANNKFGGPIP-EFSNASYSALDTLDLSANRLEGP-IPMSIFELKNLKIL  481 (1042)
Q Consensus       407 ~L~L~~n~l~~~~--p~~l~-~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L  481 (1042)
                      .|.++.|.+....  ..... ..+.+++++...|...-... ......++++..+.+..|.+... .-..+..++.+..|
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L  229 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL  229 (418)
T ss_pred             hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence            8888887432110  01111 12344555554443210000 00112467788888888876542 22345566777788


Q ss_pred             EccCCccccccchHHHHhcccCCeEEccCceeee
Q 001624          482 MLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTV  515 (1042)
Q Consensus       482 ~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~  515 (1042)
                      +|+.+++..--..+++.++++|..|.++++++..
T Consensus       230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             hhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            8888888766666778888888888888887764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.98  E-value=1.2e-06  Score=89.13  Aligned_cols=44  Identities=30%  Similarity=0.304  Sum_probs=21.6

Q ss_pred             cCcccccccCCCccCCCcchhhHHHhhccCCCccEEEccCCcCCCC
Q 001624          181 NLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGP  226 (1042)
Q Consensus       181 ~l~~L~~L~L~~~~l~~~~~~~l~~l~~~~~~L~~L~L~~n~l~~~  226 (1042)
                      ..+.++++++.+|.+++..  ...++..-+|.|+.|+++.|.+...
T Consensus        69 ~~~~v~elDL~~N~iSdWs--eI~~ile~lP~l~~LNls~N~L~s~  112 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWS--EIGAILEQLPALTTLNLSCNSLSSD  112 (418)
T ss_pred             HhhhhhhhhcccchhccHH--HHHHHHhcCccceEeeccCCcCCCc
Confidence            3455666666666655431  1122222226666666666555543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.95  E-value=4.1e-07  Score=81.93  Aligned_cols=80  Identities=29%  Similarity=0.473  Sum_probs=40.0

Q ss_pred             ccEEEccCCcccccCccccc-ccCCCcEEECCCCcccccCCccccCCCCCCeEEccCCcccccccccccCCCcCCeeecc
Q 001624          864 FTSIDFSRNNFDGPIPEKIG-RLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLS  942 (1042)
Q Consensus       864 l~~LdLs~N~l~g~ip~~~~-~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~L~~L~~L~ls  942 (1042)
                      ++.++||+|.|.. .|+.|. ..+.++.|||++|.++ .+|+++..++.|+.|+++.|.+.. .|..+..|.+|..||.-
T Consensus        55 l~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   55 LTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             EEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc-chHHHHHHHhHHHhcCC
Confidence            3445555555542 222222 2235555555555555 345555555555555555555553 24444445555555555


Q ss_pred             CCcc
Q 001624          943 HNNL  946 (1042)
Q Consensus       943 ~N~l  946 (1042)
                      .|..
T Consensus       132 ~na~  135 (177)
T KOG4579|consen  132 ENAR  135 (177)
T ss_pred             CCcc
Confidence            5544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.87  E-value=7.6e-06  Score=98.28  Aligned_cols=166  Identities=18%  Similarity=0.248  Sum_probs=104.8

Q ss_pred             CCCCCCCEEECCCCCCCCCCchhhhcCCCCcEEeCCCCCCCCCCccc-CCCChHHHH------hcCcccccccCCCccCC
Q 001624          124 GNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKL-ENPNLSGLL------QNLAELRALYLDGVNIS  196 (1042)
Q Consensus       124 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~-~~~~l~~~l------~~l~~L~~L~L~~~~l~  196 (1042)
                      ...-++...++.+.......-..+.+.. |+.|.+++-......... ...++...+      ..-.+|++|+++|... 
T Consensus        57 ~~~f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~-  134 (699)
T KOG3665|consen   57 IRKFNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSEL-  134 (699)
T ss_pred             hhhheeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccch-
Confidence            3444566666666555433333333333 777776654322211111 112222222      2346789999988543 


Q ss_pred             CcchhhHHHhhccCCCccEEEccCCcCCCC-CCccccCCCCCCEEECCCCCCCCCchHhhhCCCCCCEEEccCCCCCC-C
Q 001624          197 APGIEWCQALSSLVPKLRVLSLSSCYLSGP-IHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNG-T  274 (1042)
Q Consensus       197 ~~~~~~l~~l~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~  274 (1042)
                       ....|...+...+|.|+.|.+++-.+... ......++++|..||+|+++++..  ..++++++|+.|.+.+-.+.. .
T Consensus       135 -~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~  211 (699)
T KOG3665|consen  135 -FSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQ  211 (699)
T ss_pred             -hhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchh
Confidence             35578888888889999999988766433 223446788888889998888764  667888888888888777653 3


Q ss_pred             chhhhhcCCCCCEEECCCCC
Q 001624          275 FPETILQVHTLQTLDLSGNS  294 (1042)
Q Consensus       275 ~p~~l~~l~~L~~L~Ls~n~  294 (1042)
                      .-..+++|++|++||+|...
T Consensus       212 ~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  212 DLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             hHHHHhcccCCCeeeccccc
Confidence            33467778888888888754

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.68  E-value=3.5e-05  Score=56.59  Aligned_cols=36  Identities=39%  Similarity=0.598  Sum_probs=17.1

Q ss_pred             CCcEEECCCCcccccCCccccCCCCCCeEEccCCccc
Q 001624          887 SLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLS  923 (1042)
Q Consensus       887 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~  923 (1042)
                      .|++|++++|+++ .+|..+++|++|+.||+++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3455555555555 23444555555555555555554

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.67  E-value=3.3e-05  Score=56.73  Aligned_cols=37  Identities=46%  Similarity=0.699  Sum_probs=32.2

Q ss_pred             CCCCeEEccCCcccccccccccCCCcCCeeeccCCccc
Q 001624          910 QQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLE  947 (1042)
Q Consensus       910 ~~L~~LdLs~N~l~g~ip~~l~~L~~L~~L~ls~N~l~  947 (1042)
                      ++|+.|++++|+|+ .+|..+++|+.|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            57999999999999 56778999999999999999987

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.66  E-value=2.8e-06  Score=76.71  Aligned_cols=86  Identities=27%  Similarity=0.326  Sum_probs=53.4

Q ss_pred             ccCCCcEEEccCCcCccccChhHhhccCcccEEECCCCccccccCCCCCCCCCCcEEeCCCCcccccCCccccCCCCCcE
Q 001624          666 RAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEV  745 (1042)
Q Consensus       666 ~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  745 (1042)
                      ....|+..+|++|.+. .+|..+....+..+.|++++|.++. +|..+..++.|+.|+++.|.+. ..|..+..+.++-.
T Consensus        51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~  127 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDM  127 (177)
T ss_pred             CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHH
Confidence            3344566677777776 5666665554566667777776663 3444666666666666666666 45555555666666


Q ss_pred             EECCCCccc
Q 001624          746 LDLGNNKIR  754 (1042)
Q Consensus       746 L~Ls~N~l~  754 (1042)
                      ||..+|.+.
T Consensus       128 Lds~~na~~  136 (177)
T KOG4579|consen  128 LDSPENARA  136 (177)
T ss_pred             hcCCCCccc
Confidence            666666654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.62  E-value=1.1e-05  Score=86.45  Aligned_cols=191  Identities=24%  Similarity=0.209  Sum_probs=78.1

Q ss_pred             ChHHHHhcCcccccccCCCc-cCCCcchhhHHHhhccCCCccEEEccCCc-CCCC-CCccccCCCCCCEEECCCCCCCCC
Q 001624          174 NLSGLLQNLAELRALYLDGV-NISAPGIEWCQALSSLVPKLRVLSLSSCY-LSGP-IHPSLAKLQSLSVICLDQNDLSSP  250 (1042)
Q Consensus       174 ~l~~~l~~l~~L~~L~L~~~-~l~~~~~~~l~~l~~~~~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~  250 (1042)
                      .+..+-+.+++|+++++..| .+++.   .+..+..-+++|++++++.|. +++. +..-..+++.++.+.+.+|.=.+.
T Consensus       181 s~~sla~~C~~l~~l~L~~c~~iT~~---~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l  257 (483)
T KOG4341|consen  181 SLLSLARYCRKLRHLNLHSCSSITDV---SLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL  257 (483)
T ss_pred             HHHHHHHhcchhhhhhhcccchhHHH---HHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH
Confidence            33333444555555555442 22222   223333444666666666653 2221 112233444455555544321110


Q ss_pred             --chHhhhCCCCCCEEEccCCCCCCCc--hhhhhcCCCCCEEECCCCCCCC-CCCCCC-CCCCCCcEEEcCCcc-ccccC
Q 001624          251 --VPEFLADFFNLTSLNLSSSGLNGTF--PETILQVHTLQTLDLSGNSLLR-GSLPDF-PKNSSLRTLMLSYAN-FSGVL  323 (1042)
Q Consensus       251 --~~~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls~n~~~~-~~~~~~-~~l~~L~~L~L~~n~-l~~~~  323 (1042)
                        +...=+.+..+..+++..|......  ...-..+..|+.|+.+++.... ..+..+ .++.+|+.+.++.++ ++..-
T Consensus       258 e~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~  337 (483)
T KOG4341|consen  258 EALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG  337 (483)
T ss_pred             HHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh
Confidence              0001112333444554444321111  1111235556666665543211 001111 224555555555553 22211


Q ss_pred             Cccc-cCCCCCCEEEccCCCCCC--CcchhccCCCCCCEEEccCCcc
Q 001624          324 PDSI-GNLKNLSRLDLARCNLSG--SIPTSLAKLTQLVYLDLSSNKF  367 (1042)
Q Consensus       324 ~~~l-~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l  367 (1042)
                      -..+ .+++.|+.+++..+....  .+...-.+++.|+.|.+++|..
T Consensus       338 ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~  384 (483)
T KOG4341|consen  338 FTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCEL  384 (483)
T ss_pred             hhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhh
Confidence            1122 345667777766665431  1112223456666666666543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.50  E-value=0.00033  Score=77.53  Aligned_cols=55  Identities=18%  Similarity=0.374  Sum_probs=30.8

Q ss_pred             HHhcccCCeEEccCceeeeecCCCCCCcccccEEEeCCC-CCCCCCC-CCCCCcccEEECCCC
Q 001624          497 IQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASC-KLKVIPN-LKSQSKLFNLDLSDN  557 (1042)
Q Consensus       497 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~lp~-l~~~~~L~~L~Ls~N  557 (1042)
                      +..+.+++.|++++|.++.++    .+|.+|++|.+++| .++.+|. +  .++|+.|++++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            334555666666666555443    34556666666665 4555554 2  245666666666

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.46  E-value=0.00046  Score=76.39  Aligned_cols=71  Identities=20%  Similarity=0.372  Sum_probs=45.4

Q ss_pred             ccccEEEeCCCCCCCCCCCCCCCcccEEECCCCCCCCCcChhHhhhcCCCccEEEccCC-ccccCCCCcccccCCCceEE
Q 001624          525 SQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHN-LLSSLQRPYSISDLNLMTVL  603 (1042)
Q Consensus       525 ~~L~~L~L~~n~l~~lp~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L  603 (1042)
                      ..++.|++++|.++.+|.+  ..+|++|.++++.--..+|..+.    .+|++|++++| .+..++.        +|+.|
T Consensus        52 ~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~LP----~nLe~L~Ls~Cs~L~sLP~--------sLe~L  117 (426)
T PRK15386         52 RASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGSIP----EGLEKLTVCHCPEISGLPE--------SVRSL  117 (426)
T ss_pred             cCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCchhh----hhhhheEccCccccccccc--------ccceE
Confidence            4688999999988888853  34688888887644445665331    35777777776 4444322        45555


Q ss_pred             ecCCCc
Q 001624          604 DLHSNQ  609 (1042)
Q Consensus       604 ~l~~N~  609 (1042)
                      +++.+.
T Consensus       118 ~L~~n~  123 (426)
T PRK15386        118 EIKGSA  123 (426)
T ss_pred             EeCCCC
Confidence            554443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.42  E-value=0.00017  Score=86.86  Aligned_cols=110  Identities=24%  Similarity=0.286  Sum_probs=75.5

Q ss_pred             CCCcEEeCCCCCCCCCCcccCCCChHHHHh-cCcccccccCCCccCCCcchhhHHHhhccCCCccEEEccCCcCCCCCCc
Q 001624          151 TRLVTLDLSSSYSFGGPLKLENPNLSGLLQ-NLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHP  229 (1042)
Q Consensus       151 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~~l~-~l~~L~~L~L~~~~l~~~~~~~l~~l~~~~~~L~~L~L~~n~l~~~~~~  229 (1042)
                      .+|++||+++...       ....|+..++ .+|.|+.|.+.+..+...   ++..+..-+|+|+.||+|+++++..  .
T Consensus       122 ~nL~~LdI~G~~~-------~s~~W~~kig~~LPsL~sL~i~~~~~~~~---dF~~lc~sFpNL~sLDIS~TnI~nl--~  189 (699)
T KOG3665|consen  122 QNLQHLDISGSEL-------FSNGWPKKIGTMLPSLRSLVISGRQFDND---DFSQLCASFPNLRSLDISGTNISNL--S  189 (699)
T ss_pred             HhhhhcCccccch-------hhccHHHHHhhhCcccceEEecCceecch---hHHHHhhccCccceeecCCCCccCc--H
Confidence            4566666666421       2334444443 367777777776655433   2444555558999999999888764  6


Q ss_pred             cccCCCCCCEEECCCCCCCC-CchHhhhCCCCCCEEEccCCCCC
Q 001624          230 SLAKLQSLSVICLDQNDLSS-PVPEFLADFFNLTSLNLSSSGLN  272 (1042)
Q Consensus       230 ~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~  272 (1042)
                      +++++++|++|.+.+-.+.. ..-..+.++++|+.||+|.....
T Consensus       190 GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~  233 (699)
T KOG3665|consen  190 GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN  233 (699)
T ss_pred             HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence            78899999999998877764 34456778999999999987665

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.30  E-value=0.0004  Score=67.63  Aligned_cols=85  Identities=22%  Similarity=0.246  Sum_probs=68.9

Q ss_pred             cccEEEeCCCCCCCCCCCCCCCcccEEECCCCCCCCCcChhHhhhcCCCccEEEccCCccccCCCCcccccCCCceEEec
Q 001624          526 QVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDL  605 (1042)
Q Consensus       526 ~L~~L~L~~n~l~~lp~l~~~~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~l  605 (1042)
                      ....++|++|.+..++.|..++.|..|.+++|+|+..-|.....  .+.|+.|.+.+|.|..+.....+..+|.|++|.+
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~--~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTF--LPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhh--ccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            56678888888888888888999999999999998666653322  2469999999999988877777888889999999


Q ss_pred             CCCcccc
Q 001624          606 HSNQLQG  612 (1042)
Q Consensus       606 ~~N~l~~  612 (1042)
                      -+|+.+.
T Consensus       121 l~Npv~~  127 (233)
T KOG1644|consen  121 LGNPVEH  127 (233)
T ss_pred             cCCchhc
Confidence            9998763

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.19  E-value=0.00052  Score=66.86  Aligned_cols=104  Identities=24%  Similarity=0.305  Sum_probs=58.9

Q ss_pred             CCCCEEEccCCCCCCCcchhccCCCCCCEEEccCCcccCCCCccCCC-CCccEEEccCCCCCCCCCcccccCCCCccEEc
Q 001624          331 KNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMS-KNLTHLDLSNNALPGAISSTDWEHLSNLVYVD  409 (1042)
Q Consensus       331 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~  409 (1042)
                      .+...+||++|.+..  -..|..++.|.+|.+.+|+++..-|..... ++|+.|.+.+|++.....-..+..||+|++|.
T Consensus        42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            345566666666652  134556666777777777766555554333 66777777776664322222356677777777


Q ss_pred             ccCcccCCcC---CccccCCCCCcEEEccC
Q 001624          410 LRNNALNGSI---PRSLFSIPMLQQLLLAN  436 (1042)
Q Consensus       410 L~~n~l~~~~---p~~l~~l~~L~~L~L~~  436 (1042)
                      +-+|+++..-   ...+..+|+|+.||...
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhh
Confidence            7777665321   12234455555555543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.89  E-value=0.0023  Score=60.37  Aligned_cols=123  Identities=15%  Similarity=0.224  Sum_probs=48.7

Q ss_pred             CcccccccceeeecccCccccccchhhhccCCCcEEEccCCcCccccChhHhhccCcccEEECCCCccccccCCCCCCCC
Q 001624          638 DIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNC  717 (1042)
Q Consensus       638 ~~~~~~~~l~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~  717 (1042)
                      ..+..+..++.+.+.. .+...-...|.++++|+.+++.++ +. .++...+...++++.+.+.+ .+.......|..++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccc
Confidence            3344455566666553 344444555666666666666654 43 34443333334566666644 44444445555566


Q ss_pred             CCcEEeCCCCcccccCCccccCCCCCcEEECCCCccccccChhhhcCCCC
Q 001624          718 GLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSL  767 (1042)
Q Consensus       718 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  767 (1042)
                      +|+.+++..+ +.......|.++ +|+.+.+.. .+.......|.++++|
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            6666666554 444444555555 666665554 3333344444444444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.79  E-value=0.0012  Score=67.27  Aligned_cols=108  Identities=19%  Similarity=0.240  Sum_probs=54.9

Q ss_pred             CCCCCeeeCCCCCCCCCCCCCccCCCCCCCEEECCCC--CCCCCCchhhhcCCCCcEEeCCCCCCCCCCcccCCCChHHH
Q 001624          101 LKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNA--GFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGL  178 (1042)
Q Consensus       101 l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n--~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~~  178 (1042)
                      +..|+.|++.+..++..   ..+-.|++|++|.+|.|  +..+.++...-++++|++|++++|++..       .+-..-
T Consensus        42 ~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-------lstl~p  111 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-------LSTLRP  111 (260)
T ss_pred             ccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-------ccccch
Confidence            34444444444433322   23445667777777777  5555555555555777777777766421       111122


Q ss_pred             HhcCcccccccCCCccCCCcchhhHHHhhccCCCccEEEcc
Q 001624          179 LQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLS  219 (1042)
Q Consensus       179 l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~~~~~L~~L~L~  219 (1042)
                      ++.+.+|..|++..|..+.. ..+-..+..++++|++|+-.
T Consensus       112 l~~l~nL~~Ldl~n~~~~~l-~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  112 LKELENLKSLDLFNCSVTNL-DDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hhhhcchhhhhcccCCcccc-ccHHHHHHHHhhhhcccccc
Confidence            45555566666666554442 22333334444556555443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.69  E-value=0.00058  Score=81.13  Aligned_cols=61  Identities=26%  Similarity=0.233  Sum_probs=26.8

Q ss_pred             CCCCCEEECCCCC-CCCCchHhhhC-CCCCCEEEccCCC-CCCCc-hhhhhcCCCCCEEECCCCC
Q 001624          234 LQSLSVICLDQND-LSSPVPEFLAD-FFNLTSLNLSSSG-LNGTF-PETILQVHTLQTLDLSGNS  294 (1042)
Q Consensus       234 l~~L~~L~Ls~n~-l~~~~~~~l~~-l~~L~~L~L~~n~-l~~~~-p~~l~~l~~L~~L~Ls~n~  294 (1042)
                      +++|+.|+++++. ++...-..++. +++|++|.+.+|. +++.- -.....++.|++|++++|.
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            4455555555544 33333333332 4555555544444 33221 1222334555555555554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.41  E-value=0.0052  Score=57.97  Aligned_cols=122  Identities=14%  Similarity=0.236  Sum_probs=40.2

Q ss_pred             cccCCCCCCEEECCCCCCCCCchHhhhCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q 001624          230 SLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSL  309 (1042)
Q Consensus       230 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L  309 (1042)
                      .|.++++|+.+.+.. .+...-...|..+++|+.+.+..+ +...-...+.++++++.+.+.. .+.......|..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            344455555555543 233333334555555555555443 3322223344444555555543 2222233344445555


Q ss_pred             cEEEcCCccccccCCccccCCCCCCEEEccCCCCCCCcchhccCCCCC
Q 001624          310 RTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQL  357 (1042)
Q Consensus       310 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  357 (1042)
                      +.+++..+ +.......|.++ +|+.+.+.. .+.......|.++++|
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            55555433 332333344444 555555543 2222333444444444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.97  E-value=0.0045  Score=63.30  Aligned_cols=84  Identities=27%  Similarity=0.385  Sum_probs=63.2

Q ss_pred             cccEEEeCCCCCCCCCCCCCCCcccEEECCCC--CCCCCcChhHhhhcCCCccEEEccCCccccCCCCcccccCCCceEE
Q 001624          526 QVRTLRLASCKLKVIPNLKSQSKLFNLDLSDN--QISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVL  603 (1042)
Q Consensus       526 ~L~~L~L~~n~l~~lp~l~~~~~L~~L~Ls~N--~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L  603 (1042)
                      .|+.+.+.++.++++..+..+++|+.|++|.|  ++.+.++-..-..  ++|+++++++|++..+........+.+|..|
T Consensus        44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~--P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L  121 (260)
T KOG2739|consen   44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKA--PNLKVLNLSGNKIKDLSTLRPLKELENLKSL  121 (260)
T ss_pred             chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhC--CceeEEeecCCccccccccchhhhhcchhhh
Confidence            56667778888888888888899999999999  7776665544333  6799999999998876655556666677777


Q ss_pred             ecCCCccc
Q 001624          604 DLHSNQLQ  611 (1042)
Q Consensus       604 ~l~~N~l~  611 (1042)
                      |+.+|..+
T Consensus       122 dl~n~~~~  129 (260)
T KOG2739|consen  122 DLFNCSVT  129 (260)
T ss_pred             hcccCCcc
Confidence            77776544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.79  E-value=0.0042  Score=37.89  Aligned_cols=20  Identities=55%  Similarity=0.745  Sum_probs=10.4

Q ss_pred             CCeEEccCCcccccccccccC
Q 001624          912 LESLDLSMNHLSDQIPIQLAN  932 (1042)
Q Consensus       912 L~~LdLs~N~l~g~ip~~l~~  932 (1042)
                      |+.||||+|+|+ .||.+|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            455555555555 45544443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.62  E-value=0.0025  Score=75.67  Aligned_cols=217  Identities=24%  Similarity=0.209  Sum_probs=104.4

Q ss_pred             CCCCcEEeCCCCCCCCCCcccCCCChHHHHhcCcccccccCCCc-cCCCcchhhHHHhhccCCCccEEEccCCc-CCCCC
Q 001624          150 MTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGV-NISAPGIEWCQALSSLVPKLRVLSLSSCY-LSGPI  227 (1042)
Q Consensus       150 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~-~l~~~~~~~l~~l~~~~~~L~~L~L~~n~-l~~~~  227 (1042)
                      ++.|+.|.+..+.      .+....+......++.|++|+++++ ............+...+++|+.|+++.+. ++...
T Consensus       187 ~~~L~~l~l~~~~------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~  260 (482)
T KOG1947|consen  187 CPLLKRLSLSGCS------KITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG  260 (482)
T ss_pred             CchhhHhhhcccc------cCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh
Confidence            4555555555542      1222224444555666666666552 21111122222233334666666666666 44333


Q ss_pred             CccccC-CCCCCEEECCCCC-CCCC-chHhhhCCCCCCEEEccCCCCCCC--chhhhhcCCCCCEEECCCCCCCCCCCCC
Q 001624          228 HPSLAK-LQSLSVICLDQND-LSSP-VPEFLADFFNLTSLNLSSSGLNGT--FPETILQVHTLQTLDLSGNSLLRGSLPD  302 (1042)
Q Consensus       228 ~~~l~~-l~~L~~L~Ls~n~-l~~~-~~~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~~~~~~~~~  302 (1042)
                      -..+.. +++|++|.+..+. ++.. +-.....++.|++|++++|.....  +.....++++|+.|.+.....       
T Consensus       261 l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~-------  333 (482)
T KOG1947|consen  261 LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG-------  333 (482)
T ss_pred             HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC-------
Confidence            333332 5667777766555 4432 222233566777777777765311  333344566666655443321       


Q ss_pred             CCCCCCCcEEEcCCcccc---ccCCccccCCCCCCEEEccCCCCCCCc-chhccCCCCCCEEEccCCcccCCCCccCCCC
Q 001624          303 FPKNSSLRTLMLSYANFS---GVLPDSIGNLKNLSRLDLARCNLSGSI-PTSLAKLTQLVYLDLSSNKFVGPIPSLHMSK  378 (1042)
Q Consensus       303 ~~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~  378 (1042)
                         +..++.+.+......   ......+..+++++.+.+..+...... ...+.+++.|. ..+...        .....
T Consensus       334 ---c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~--------~~~~~  401 (482)
T KOG1947|consen  334 ---CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR--------LCRSD  401 (482)
T ss_pred             ---CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH--------hccCC
Confidence               334444444433221   122234567788888888877743222 23445555552 221111        01112


Q ss_pred             CccEEEccCCCCC
Q 001624          379 NLTHLDLSNNALP  391 (1042)
Q Consensus       379 ~L~~L~L~~n~l~  391 (1042)
                      .++.|+++.+...
T Consensus       402 ~l~~L~l~~~~~~  414 (482)
T KOG1947|consen  402 SLRVLNLSDCRLV  414 (482)
T ss_pred             ccceEecccCccc
Confidence            2777777777643

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.50  E-value=0.0021  Score=65.56  Aligned_cols=16  Identities=50%  Similarity=0.750  Sum_probs=7.9

Q ss_pred             HhcCcccccccCCCcc
Q 001624          179 LQNLAELRALYLDGVN  194 (1042)
Q Consensus       179 l~~l~~L~~L~L~~~~  194 (1042)
                      ++++++|+.|+|..|.
T Consensus        84 LknlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   84 LKNLPSLRTLWLDENP   99 (388)
T ss_pred             HhcCchhhhHhhccCC
Confidence            4445555555555443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.14  E-value=0.0081  Score=36.64  Aligned_cols=19  Identities=37%  Similarity=0.496  Sum_probs=8.9

Q ss_pred             CcEEECCCCcccccCCcccc
Q 001624          888 LYGLNFSQNAFGGPIPSTIG  907 (1042)
Q Consensus       888 L~~L~Ls~N~l~g~ip~~~~  907 (1042)
                      |+.||||+|+++ .||+.|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            344455555444 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.86  E-value=0.0014  Score=66.91  Aligned_cols=86  Identities=24%  Similarity=0.283  Sum_probs=42.0

Q ss_pred             CCCEEEccCCCCCCCcchhccCCCCCCEEEccCCcccCCCCccCCCCCccEEEccCCCCCCCCCcccccCCCCccEEccc
Q 001624          332 NLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLR  411 (1042)
Q Consensus       332 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~  411 (1042)
                      +.+.|++-+|.+.++  ....+++.|+.|.|+-|.++. +..+..+++|++|+|..|.|...-.-..+.++|+|+.|.|.
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss-L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS-LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeecccccc-chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            344444445544421  223445555555555555542 22233345555555555554421111225666777777777


Q ss_pred             CcccCCcCC
Q 001624          412 NNALNGSIP  420 (1042)
Q Consensus       412 ~n~l~~~~p  420 (1042)
                      .|+..|.-+
T Consensus        97 ENPCc~~ag  105 (388)
T KOG2123|consen   97 ENPCCGEAG  105 (388)
T ss_pred             cCCcccccc
Confidence            766655443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.45  E-value=0.00077  Score=77.79  Aligned_cols=93  Identities=27%  Similarity=0.268  Sum_probs=50.4

Q ss_pred             CCCcEEeCCCCCCCCCCcccCCCChHHHHhcCcccccccCCCccCCCcchhhHHHhhccC-CCccEEEccCCcCCCCCC-
Q 001624          151 TRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLV-PKLRVLSLSSCYLSGPIH-  228 (1042)
Q Consensus       151 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~~~-~~L~~L~L~~n~l~~~~~-  228 (1042)
                      ..+.+|.|.+|.+...    ....+...+.....|+.|++++|++.+.+...+....... ..++.|++..|.+++... 
T Consensus        87 ~~l~~L~L~~~~l~~~----~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~  162 (478)
T KOG4308|consen   87 ASLLHLSLANNRLGDR----GAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAA  162 (478)
T ss_pred             hhHHHhhhhhCccccc----hHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchH
Confidence            3477777777765332    2233444566777777788887777766555444332221 345556666666554322 


Q ss_pred             ---ccccCCCCCCEEECCCCCC
Q 001624          229 ---PSLAKLQSLSVICLDQNDL  247 (1042)
Q Consensus       229 ---~~l~~l~~L~~L~Ls~n~l  247 (1042)
                         ..+.....++.++++.|.+
T Consensus       163 ~l~~~L~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  163 PLAAVLEKNEHLTELDLSLNGL  184 (478)
T ss_pred             HHHHHHhcccchhHHHHHhccc
Confidence               2333344444455544443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.94  E-value=0.0023  Score=73.92  Aligned_cols=60  Identities=27%  Similarity=0.366  Sum_probs=30.8

Q ss_pred             CCEEECCCCCCCCC----chHhhhCC-CCCCEEEccCCCCCCC----chhhhhcCCCCCEEECCCCCCC
Q 001624          237 LSVICLDQNDLSSP----VPEFLADF-FNLTSLNLSSSGLNGT----FPETILQVHTLQTLDLSGNSLL  296 (1042)
Q Consensus       237 L~~L~Ls~n~l~~~----~~~~l~~l-~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~~~  296 (1042)
                      ++.+++..|.+...    ....+..+ ..+++++++.|.++..    +...+..++.++++.++.|.+.
T Consensus       235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            44455555554432    12223333 4556666666666533    3334455666677777666543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.39  E-value=0.32  Score=27.43  Aligned_cols=16  Identities=38%  Similarity=0.704  Sum_probs=5.8

Q ss_pred             cccEEEeCCCCCCCCC
Q 001624          526 QVRTLRLASCKLKVIP  541 (1042)
Q Consensus       526 ~L~~L~L~~n~l~~lp  541 (1042)
                      +|++|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            3445555555544443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.58  E-value=0.021  Score=57.02  Aligned_cols=82  Identities=17%  Similarity=0.130  Sum_probs=70.0

Q ss_pred             CCEEEEECCCCCCccccCCCCCcccCCCCCeeeCCCCCCCCCCCCCccCCCCCCCEEECCCCCCCCCCchhhhcCCCCcE
Q 001624           76 GRVIGLDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVT  155 (1042)
Q Consensus        76 ~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~  155 (1042)
                      .||+.||++.+.+...   -..+..++.|..||++.|.+.-  +|..++.+..++++++..|..+ ..|.+.++.+++++
T Consensus        42 kr~tvld~~s~r~vn~---~~n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLVNL---GKNFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK  115 (326)
T ss_pred             ceeeeehhhhhHHHhh---ccchHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence            5899999999877633   3567788999999999998754  7999999999999999988877 78999999999999


Q ss_pred             EeCCCCCC
Q 001624          156 LDLSSSYS  163 (1042)
Q Consensus       156 L~Ls~n~~  163 (1042)
                      +++.++.+
T Consensus       116 ~e~k~~~~  123 (326)
T KOG0473|consen  116 NEQKKTEF  123 (326)
T ss_pred             hhhccCcc
Confidence            99888753

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=86.87  E-value=0.42  Score=26.99  Aligned_cols=13  Identities=62%  Similarity=0.797  Sum_probs=5.7

Q ss_pred             CCcEEEccCCcCc
Q 001624          669 YLLVLDLSNNKLS  681 (1042)
Q Consensus       669 ~L~~L~Ls~N~l~  681 (1042)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4555666666554

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.79  E-value=0.58  Score=29.76  Aligned_cols=18  Identities=50%  Similarity=0.610  Sum_probs=10.2

Q ss_pred             CCCCeEEccCCccccccc
Q 001624          910 QQLESLDLSMNHLSDQIP  927 (1042)
Q Consensus       910 ~~L~~LdLs~N~l~g~ip  927 (1042)
                      ++|+.|+|++|+|+...+
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            456666666666664433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.79  E-value=0.58  Score=29.76  Aligned_cols=18  Identities=50%  Similarity=0.610  Sum_probs=10.2

Q ss_pred             CCCCeEEccCCccccccc
Q 001624          910 QQLESLDLSMNHLSDQIP  927 (1042)
Q Consensus       910 ~~L~~LdLs~N~l~g~ip  927 (1042)
                      ++|+.|+|++|+|+...+
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            456666666666664433

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.00  E-value=0.043  Score=54.90  Aligned_cols=84  Identities=17%  Similarity=0.160  Sum_probs=71.3

Q ss_pred             cccccEEEccCCcccccCcccccccCCCcEEECCCCcccccCCccccCCCCCCeEEccCCcccccccccccCCCcCCeee
Q 001624          861 LSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLN  940 (1042)
Q Consensus       861 l~~l~~LdLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~g~ip~~l~~L~~L~~L~  940 (1042)
                      ....+.||+|.|++.. .-..|.-++.+..||+|.|++. ..|+.++++..+..+++..|.++ ..|.++..++.+++++
T Consensus        41 ~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            4567789999999863 3456777888999999999987 67999999999999999999888 6789999999999999


Q ss_pred             ccCCccc
Q 001624          941 LSHNNLE  947 (1042)
Q Consensus       941 ls~N~l~  947 (1042)
                      +-.|.+.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            9999763

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=84.79  E-value=0.23  Score=30.92  Aligned_cols=19  Identities=42%  Similarity=0.562  Sum_probs=9.2

Q ss_pred             CCCCeEEccCCcccccccc
Q 001624          910 QQLESLDLSMNHLSDQIPI  928 (1042)
Q Consensus       910 ~~L~~LdLs~N~l~g~ip~  928 (1042)
                      ++|++|||++|+|++....
T Consensus         2 ~~L~~L~l~~n~i~~~g~~   20 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGAS   20 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHH
Confidence            4555666666665554433

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=81.72  E-value=0.45  Score=29.60  Aligned_cols=17  Identities=53%  Similarity=0.645  Sum_probs=7.9

Q ss_pred             CCCcEEECCCCcccccc
Q 001624          741 RKLEVLDLGNNKIRDTF  757 (1042)
Q Consensus       741 ~~L~~L~Ls~N~l~~~~  757 (1042)
                      ++|++|+|++|++++..
T Consensus         2 ~~L~~L~l~~n~i~~~g   18 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEG   18 (24)
T ss_dssp             TT-SEEE-TSSBEHHHH
T ss_pred             CCCCEEEccCCcCCHHH
Confidence            45555555555555443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=81.32  E-value=1.1  Score=28.35  Aligned_cols=13  Identities=54%  Similarity=0.800  Sum_probs=6.3

Q ss_pred             CCcEEeCCCCccc
Q 001624          718 GLQTLDLNENQLG  730 (1042)
Q Consensus       718 ~L~~L~Ls~N~l~  730 (1042)
                      +|++|+|++|+++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=81.32  E-value=1.1  Score=28.35  Aligned_cols=13  Identities=54%  Similarity=0.800  Sum_probs=6.3

Q ss_pred             CCcEEeCCCCccc
Q 001624          718 GLQTLDLNENQLG  730 (1042)
Q Consensus       718 ~L~~L~Ls~N~l~  730 (1042)
                      +|++|+|++|+++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3444444444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1042
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-48
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-48
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-15
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-15
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-10
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		2e-06
2z7x_B	520	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		1e-05
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		2e-05
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		5e-05
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		7e-05
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		7e-05
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		1e-04
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		1e-04
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		2e-04
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		2e-04
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		2e-04
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		2e-04
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		2e-04
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		2e-04
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		2e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		3e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		3e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  189 bits (481), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 197/689 (28%), Positives = 302/689 (43%), Gaps = 71/689 (10%)
Query: 333 LSRLDLARCNLSGSIPT--SLAKLTQLVYLDLSSN--KFVGPIPSLHMSKNLTHLDLSNN 388
           L+ LDL+R +LSG + T  SL   + L +L++SSN   F G +       +L  LDLS N
Sbjct: 99  LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 158
Query: 389 ALPGAISSTDW---EHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPE 445
           ++ GA +   W   +    L ++ +  N ++G +  S      L+ L +++N F   IP 
Sbjct: 159 SISGA-NVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIPF 215
Query: 446 FSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIR 505
             + S  AL  LD+S N+L G    +I     LK+L +SSN+  G +    ++ L+ L  
Sbjct: 216 LGDCS--ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSL 273
Query: 506 LELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPN 565
            E             + F  ++      +C             L  LDLS N   G +P 
Sbjct: 274 AE-------------NKFTGEIPDFLSGACD-----------TLTGLDLSGNHFYGAVPP 309
Query: 566 WVWEIGNGGLEYXXXXXXXXXXXQRPY-SISDLNLMTVLDLHSNQLQGNIPHPPRNA--- 621
           +    G+  L             + P  ++  +  + VLDL  N+  G +P    N    
Sbjct: 310 F---FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 366
Query: 622 -VLVDYSNNSFTSSI-PGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNK 679
            + +D S+N+F+  I P    N  N      L +N  TG IP T+     L+ L LS N 
Sbjct: 367 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 426
Query: 680 LSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLAN 739
           LSG +P+ L  +S  L  L L  N L G +         L+TL L+ N L G +P  L+N
Sbjct: 427 LSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 485
Query: 740 CRKLEVLDLGNNKIRDTFPCWLKNIXXXXXXXXXXNSFYGSITCRENDDSWPMLQIVDIA 799
           C  L  + L NN++    P W+  +          NSF G+I     D     L  +D+ 
Sbjct: 486 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD--CRSLIWLDLN 543
Query: 800 SNNFGGRVP-----------------QKCITSWKAMMSDEDEAQSN---FKDVHFELLTD 839
           +N F G +P                 ++ +      M  E     N   F+ +  E L  
Sbjct: 544 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 603
Query: 840 IFYQDVVTVT---WKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQN 896
           +  ++   +T   + G              +D S N   G IP++IG +  L+ LN   N
Sbjct: 604 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 663
Query: 897 AFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQL 956
              G IP  +G+L+ L  LDLS N L  +IP  ++ LT L+ ++LS+NNL G IP   Q 
Sbjct: 664 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF 723
Query: 957 QSFSPTSFEGNEGLCGAPLNVCPPNSSKA 985
           ++F P  F  N GLCG PL  C P+++  
Sbjct: 724 ETFPPAKFLNNPGLCGYPLPRCDPSNADG 752

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  189 bits (481), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 197/689 (28%), Positives = 302/689 (43%), Gaps = 71/689 (10%)
Query: 333 LSRLDLARCNLSGSIPT--SLAKLTQLVYLDLSSN--KFVGPIPSLHMSKNLTHLDLSNN 388
           L+ LDL+R +LSG + T  SL   + L +L++SSN   F G +       +L  LDLS N
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161
Query: 389 ALPGAISSTDW---EHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPE 445
           ++ GA +   W   +    L ++ +  N ++G +  S      L+ L +++N F   IP 
Sbjct: 162 SISGA-NVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIPF 218
Query: 446 FSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIR 505
             + S  AL  LD+S N+L G    +I     LK+L +SSN+  G +    ++ L+ L  
Sbjct: 219 LGDCS--ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSL 276
Query: 506 LELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPN 565
            E             + F  ++      +C             L  LDLS N   G +P 
Sbjct: 277 AE-------------NKFTGEIPDFLSGACD-----------TLTGLDLSGNHFYGAVPP 312
Query: 566 WVWEIGNGGLEYXXXXXXXXXXXQRPY-SISDLNLMTVLDLHSNQLQGNIPHPPRNA--- 621
           +    G+  L             + P  ++  +  + VLDL  N+  G +P    N    
Sbjct: 313 F---FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369
Query: 622 -VLVDYSNNSFTSSI-PGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNK 679
            + +D S+N+F+  I P    N  N      L +N  TG IP T+     L+ L LS N 
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 680 LSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLAN 739
           LSG +P+ L  +S  L  L L  N L G +         L+TL L+ N L G +P  L+N
Sbjct: 430 LSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488
Query: 740 CRKLEVLDLGNNKIRDTFPCWLKNIXXXXXXXXXXNSFYGSITCRENDDSWPMLQIVDIA 799
           C  L  + L NN++    P W+  +          NSF G+I     D     L  +D+ 
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD--CRSLIWLDLN 546
Query: 800 SNNFGGRVP-----------------QKCITSWKAMMSDEDEAQSN---FKDVHFELLTD 839
           +N F G +P                 ++ +      M  E     N   F+ +  E L  
Sbjct: 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606
Query: 840 IFYQDVVTVT---WKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQN 896
           +  ++   +T   + G              +D S N   G IP++IG +  L+ LN   N
Sbjct: 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666
Query: 897 AFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQL 956
              G IP  +G+L+ L  LDLS N L  +IP  ++ LT L+ ++LS+NNL G IP   Q 
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF 726
Query: 957 QSFSPTSFEGNEGLCGAPLNVCPPNSSKA 985
           ++F P  F  N GLCG PL  C P+++  
Sbjct: 727 ETFPPAKFLNNPGLCGYPLPRCDPSNADG 755

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 115/244 (47%), Gaps = 40/244 (16%)
Query: 223 LSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADXXXXXXXXXXXXXXXXXXPETILQV 282
           L GPI P++AKL  L  + +   ++S  +P+FL+                        Q+
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS------------------------QI 124
Query: 283 HTLQTLDLSGNSLLRGSLPDFPKNSSLRTLM---LSYANFSGVLPDSIGNLKNL-SRLDL 338
            TL TLD S N+ L G+LP  P  SSL  L+         SG +PDS G+   L + + +
Sbjct: 125 KTLVTLDFSYNA-LSGTLP--PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 339 ARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMS-KNLTHLDLSNNALPGAISST 397
           +R  L+G IP + A L  L ++DLS N   G    L  S KN   + L+ N+L   +   
Sbjct: 182 SRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV 240
Query: 398 DWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTL 457
                 NL  +DLRNN + G++P+ L  +  L  L ++ N   G IP+  N     L   
Sbjct: 241 GLSK--NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN-----LQRF 293
Query: 458 DLSA 461
           D+SA
Sbjct: 294 DVSA 297

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 112/229 (48%), Gaps = 8/229 (3%)
Query: 276 PETILQVHTLQTLDLSGNSLLRGSLPD-FPKNSSLRTLMLSYANFSGVLPDSIGNLKNLS 334
           P ++  +  L  L + G + L G +P    K + L  L +++ N SG +PD +  +K L 
Sbjct: 69  PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128
Query: 335 RLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLH--MSKNLTHLDLSNNALPG 392
            LD +   LSG++P S++ L  LV +    N+  G IP  +   SK  T + +S N L G
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188
Query: 393 AISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYS 452
            I  T + +L NL +VDL  N L G       S    Q++ LA N     + +   +   
Sbjct: 189 KIPPT-FANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS--K 244
Query: 453 ALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTV-QLAAIQRL 500
            L+ LDL  NR+ G +P  + +LK L  L +S N L G + Q   +QR 
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 99/257 (38%), Gaps = 36/257 (14%)
Query: 727 NQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNIXXXXXXXXXXNSFYGSITCREN 786
           N L G +P ++A   +L  L + +  +    P +L  I          N+  G++    +
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP--PS 144
Query: 787 DDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVV 846
             S P L  +    N   G +P              D   S              +  + 
Sbjct: 145 ISSLPNLVGITFDGNRISGAIP--------------DSYGS--------------FSKLF 176
Query: 847 TVTWKGREMELVKILSIFTS-----IDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGP 901
           T     R     KI   F +     +D SRN  +G      G  K+   ++ ++N+    
Sbjct: 177 TSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236
Query: 902 IPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSP 961
           +   +G  + L  LDL  N +   +P  L  L FL  LN+S NNL G IP    LQ F  
Sbjct: 237 L-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDV 295
Query: 962 TSFEGNEGLCGAPLNVC 978
           +++  N+ LCG+PL  C
Sbjct: 296 SAYANNKCLCGSPLPAC 312

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 138/524 (26%), Positives = 206/524 (39%), Gaps = 76/524 (14%)
Query: 285 LQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNL- 343
           L TL L+GN +   +L  F   SSL+ L+    N + +    IG+LK L  L++A  NL 
Sbjct: 102 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLI 160
Query: 344 -SGSIPTSLAKLTQLVYLDLSSNK----FVGPIPSLHMSKNLTHLDLS-----NNALPGA 393
            S  +P   + LT L +LDLSSNK    +   +  LH    L           N   PGA
Sbjct: 161 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 220
Query: 394 ISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSA 453
                   L+      LRNN  + ++ ++   I  L  L +     G    EF N     
Sbjct: 221 FKEIRLHKLT------LRNNFDSLNVMKT--CIQGLAGLEVHRLVLG----EFRNE--GN 266
Query: 454 LDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNL 513
           L+  D SA  LEG   ++I E +    L      L+G + L     L N+    L   ++
Sbjct: 267 LEKFDKSA--LEGLCNLTIEEFR----LAYLDYYLDGIIDL--FNCLTNVSSFSLV--SV 316
Query: 514 TVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQS---------------------KLFNL 552
           T+    D S+    + L L +CK    P LK +S                      L  L
Sbjct: 317 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL 376
Query: 553 DLSDNQISGEIPNWVWEIGNGGLEYXXXXXXXXXXXQRPYSISDLNLMTVLDL-HSNQLQ 611
           DLS N +S +      + G   L+Y              +    L  +  LD  HSN  Q
Sbjct: 377 DLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNF--LGLEQLEHLDFQHSNLKQ 434
Query: 612 G---NIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSI-TGVIPETICRA 667
               ++    RN + +D S+     +  G I N ++      ++ NS     +P+     
Sbjct: 435 MSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTEL 493
Query: 668 KYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNC--GLQTLDLN 725
           + L  LDLS  +L    PT    +S  L VLN+  N+       TFP  C   LQ LD +
Sbjct: 494 RNLTFLDLSQCQLEQLSPTAFNSLSS-LQVLNMSHNNFFSL--DTFPYKCLNSLQVLDYS 550
Query: 726 ENQLGGTVPKSLANC-RKLEVLDLGNNKI-----RDTFPCWLKN 763
            N +  +  + L +    L  L+L  N         +F  W+K+
Sbjct: 551 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 594

>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 520

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 105/474 (22%), Positives = 204/474 (43%), Gaps = 41/474 (8%)
Query: 297 RGSLPDFPKNSSLRTLMLSYAN--FSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKL 354
           +  L   PK+ S +T +L+ +    S +    I +L  L R+ +   N    +  S+ K 
Sbjct: 9   KNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKL-RILIISHNRIQYLDISVFKF 67
Query: 355 TQ-LVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNN 413
            Q L YLDLS NK V    S H + NL HLDLS NA        ++ ++S L ++ L   
Sbjct: 68  NQELEYLDLSHNKLVKI--SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT 125
Query: 414 ALNGSIPRSLFSIPMLQQLLLANNKFG-GPIPE-FSNASYSALDTLDLSANRLEGPIPMS 471
            L  S    +  + + + LL+    +G    PE   + +  +L  +  +       + +S
Sbjct: 126 HLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVS 185
Query: 472 I-----FELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQ 526
           +      EL N+K  +L  NK   +  L+ + +L+   +L    +NLT+N + ++++ S 
Sbjct: 186 VKTVANLELSNIKC-VLEDNK--CSYFLSILAKLQTNPKL----SNLTLN-NIETTWNSF 237
Query: 527 VRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYXXXXXXXXX 586
           +R L+L              + ++   +S+ ++ G++    ++     L+          
Sbjct: 238 IRILQLV-----------WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD 286
Query: 587 XXQRPYS-----ISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGN 641
               P S      S++N+       +  +    P      + +D+SNN  T ++  + G+
Sbjct: 287 VFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGH 346
Query: 642 SMNF-TIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNL 700
                T+   ++       I E   + K L  LD+S N +S          +  L  LN+
Sbjct: 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406
Query: 701 RGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIR 754
             N L+ T+    P    ++ LDL+ N++  ++PK +     L+ L++ +N+++
Sbjct: 407 SSNILTDTIFRCLPPR--IKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLK 457

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 137/524 (26%), Positives = 205/524 (39%), Gaps = 76/524 (14%)
Query: 285 LQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNL- 343
           L TL L+GN +   +L  F   SSL+ L+    N + +    IG+LK L  L++A  NL 
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLI 136
Query: 344 -SGSIPTSLAKLTQLVYLDLSSNK----FVGPIPSLHMSKNLTHLDLS-----NNALPGA 393
            S  +P   + LT L +LDLSSNK    +   +  LH    L           N   PGA
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196
Query: 394 ISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSA 453
                   L+      LRNN  + ++ ++   I  L  L +     G    EF N     
Sbjct: 197 FKEIRLHKLT------LRNNFDSLNVMKT--CIQGLAGLEVHRLVLG----EFRNE--GN 242
Query: 454 LDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNL 513
           L+  D SA  LEG   ++I E +    L      L+  + L     L N+    L   ++
Sbjct: 243 LEKFDKSA--LEGLCNLTIEEFR----LAYLDYYLDDIIDL--FNCLTNVSSFSLV--SV 292
Query: 514 TVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQS---------------------KLFNL 552
           T+    D S+    + L L +CK    P LK +S                      L  L
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL 352
Query: 553 DLSDNQISGEIPNWVWEIGNGGLEYXXXXXXXXXXXQRPYSISDLNLMTVLDL-HSNQLQ 611
           DLS N +S +      + G   L+Y              +    L  +  LD  HSN  Q
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF--LGLEQLEHLDFQHSNLKQ 410
Query: 612 G---NIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSI-TGVIPETICRA 667
               ++    RN + +D S+     +  G I N ++      ++ NS     +P+     
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469
Query: 668 KYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNC--GLQTLDLN 725
           + L  LDLS  +L    PT    +S  L VLN+  N+       TFP  C   LQ LD +
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSS-LQVLNMSHNNFFSL--DTFPYKCLNSLQVLDYS 526
Query: 726 ENQLGGTVPKSLANC-RKLEVLDLGNNKI-----RDTFPCWLKN 763
            N +  +  + L +    L  L+L  N         +F  W+K+
Sbjct: 527 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 570

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 132/302 (43%), Gaps = 29/302 (9%)
Query: 284 TLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNL 343
           +++ LDLS   +   +   F     L+ L L+Y   + +  ++   L NL  L+L+  NL
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY-NL 325
Query: 344 SGSIPTS-LAKLTQLVYLDLSSNKF-VGPIPSLHMSKNLTHLDLSNNALP---------- 391
            G + +S    L ++ Y+DL  N   +    +    + L  LDL +NAL           
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD 385
Query: 392 ------GAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPE 445
                   ++       +NL+++   N   N  I   L  +P LQ L+L  N+F     +
Sbjct: 386 IFLSGNKLVTLPKINLTANLIHLS-ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD 444
Query: 446 FSNASYSALDTLDLSANRL----EGPIPMSIFE-LKNLKILMLSSNKLNGTVQLAAIQRL 500
            + +   +L+ L L  N L    E  +   +FE L +L++L L+ N LN ++       L
Sbjct: 445 QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHL 503
Query: 501 RNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQIS 560
             L  L L+ N LTV +  D   P+ +  L ++  +L + PN      L  LD++ N+  
Sbjct: 504 TALRGLSLNSNRLTVLSHND--LPANLEILDISRNQL-LAPNPDVFVSLSVLDITHNKFI 560
Query: 561 GE 562
            E
Sbjct: 561 CE 562

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 454 LDTLDLSANRLEGPIPMSIF-ELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLEL-SYN 511
           L+TL+L  NRL   IP   F  L  LK L L +N +  ++   A  R+ +L RL+L    
Sbjct: 114 LNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELK 171
Query: 512 NLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIP 564
            L+  + G     S +R L LA C L+ IPNL    KL  LDLS N +S   P
Sbjct: 172 RLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRP 224

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 3/185 (1%)
Query: 329 NLKNLSRLDLARCNLS--GSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLS 386
           +L +L  LDL+R  LS  G    S    T L YLDLS N  +    +    + L HLD  
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 404
Query: 387 NNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEF 446
           ++ L      + +  L NL+Y+D+ +     +       +  L+ L +A N F       
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464
Query: 447 SNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRL 506
                  L  LDLS  +LE   P +   L +L++L ++SN+L  +V      RL +L ++
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKI 523
Query: 507 ELSYN 511
            L  N
Sbjct: 524 WLHTN 528

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 127/488 (26%), Positives = 189/488 (38%), Gaps = 66/488 (13%)
Query: 285 LQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNL- 343
           L TL L+GN +   +L  F   SSL+ L+    N + +    IG+LK L  L++A  NL 
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLI 136
Query: 344 -SGSIPTSLAKLTQLVYLDLSSNK----FVGPIPSLHMSKNLTHLDLS-----NNALPGA 393
            S  +P   + LT L +LDLSSNK    +   +  LH    L           N   PGA
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196
Query: 394 ISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSA 453
                   L+      LRNN  + ++ ++   I  L  L +     G    EF N     
Sbjct: 197 FKEIRLHKLT------LRNNFDSLNVMKT--CIQGLAGLEVHRLVLG----EFRNE--GN 242
Query: 454 LDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNL 513
           L+  D SA  LEG   ++I E +    L      L+  + L     L N+    L   ++
Sbjct: 243 LEKFDKSA--LEGLCNLTIEEFR----LAYLDYYLDDIIDL--FNCLTNVSSFSLV--SV 292
Query: 514 TVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQS---------------------KLFNL 552
           T+    D S+    + L L +CK    P LK +S                      L  L
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL 352
Query: 553 DLSDNQISGEIPNWVWEIGNGGLEYXXXXXXXXXXXQRPYSISDLNLMTVLDL-HSNQLQ 611
           DLS N +S +      + G   L+Y              +    L  +  LD  HSN  Q
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF--LGLEQLEHLDFQHSNLKQ 410
Query: 612 G---NIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSI-TGVIPETICRA 667
               ++    RN + +D S+     +  G I N ++      ++ NS     +P+     
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469
Query: 668 KYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNEN 727
           + L  LDLS  +L    PT    +S  L VLN+  N L       F     LQ + L+ N
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSS-LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Query: 728 QLGGTVPK 735
               + P+
Sbjct: 529 PWDCSCPR 536

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 125/293 (42%), Gaps = 38/293 (12%)
Query: 284 TLQTLDLSGNSLLRGSLPDFP--KNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARC 341
           ++Q L L+ N LL  S   F   K ++L  L LSY N   V   S   L +L  L L   
Sbjct: 223 SIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYN 282
Query: 342 NLSGSIPTSLAKLTQLVYLDLSSNKFVGPIP----------SLHMSKNLTHLDLSNNALP 391
           N+    P S   L+ L YL L        +           S    K L +L++ +N +P
Sbjct: 283 NIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIP 342
Query: 392 GAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASY 451
              S+T +  L +L Y+         S+ ++  S+  L                F + ++
Sbjct: 343 STKSNT-FTGLVSLKYL---------SLSKTFTSLQTLTN------------ETFVSLAH 380
Query: 452 SALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYN 511
           S L TL+L+ N +      +   L  L+IL L  N++   +     + LRN+  + LSYN
Sbjct: 381 SPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYN 440
Query: 512 N-LTVNASGDSSFPSQVRTL--RLASCKLKVIPN-LKSQSKLFNLDLSDNQIS 560
             L ++ S  +  PS  R +  R+A   + + P+  +    L  LDLS+N I+
Sbjct: 441 KYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIA 493

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 105/222 (47%), Gaps = 5/222 (2%)
Query: 282 VHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARC 341
           ++ L++L++  N L+  S   F   +SL  L L   N + +  +++ +L  L  L L   
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186
Query: 342 NLSGSIPTSLAKLTQLVYLDLSSNKFVGPI-PSLHMSKNLTHLDLSNNALPGAISSTDWE 400
           N++     S  +L +L  L++S   ++  + P+     NLT L +++  L  A+      
Sbjct: 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVR 245
Query: 401 HLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLS 460
           HL  L +++L  N ++      L  +  LQ++ L   +     P ++    + L  L++S
Sbjct: 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP-YAFRGLNYLRVLNVS 304
Query: 461 ANRLEGPIPMSIFE-LKNLKILMLSSNKLNGTVQLAAIQRLR 501
            N+L   +  S+F  + NL+ L+L SN L    +L  + R R
Sbjct: 305 GNQLTT-LEESVFHSVGNLETLILDSNPLACDCRLLWVFRRR 345

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 59/119 (49%), Gaps = 9/119 (7%)
Query: 381 THLDLSNNALPGAISSTD-WEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKF 439
           T L L++N L G ISS   +  L +LV ++L+ N L G  P +      +Q+L L  NK 
Sbjct: 32  TELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK- 89
Query: 440 GGPIPEFSNASY---SALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLA 495
              I E SN  +     L TL+L  N++   +P S   L +L  L L+SN  N    LA
Sbjct: 90  ---IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 119/243 (48%), Gaps = 47/243 (19%)
Query: 325 DSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLD 384
           D +  L NL++++ +   L+   P  L  LT+LV + +++N+     P  +++ NLT L 
Sbjct: 61  DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLT-NLTGLT 117
Query: 385 LSNNALPGAISSTD-WEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPI 443
           L NN     I+  D  ++L+NL  ++L +N +  S   +L  +  LQQL      FG  +
Sbjct: 118 LFNNQ----ITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL-----SFGNQV 166
Query: 444 PEFSN-ASYSALDTLDLSANRLEGPIPMSIF-ELKNLKILMLSSNKLNGTVQLAAIQRLR 501
            +    A+ + L+ LD+S+N++     +S+  +L NL+ L+ ++N+++    L     L 
Sbjct: 167 TDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGI---LT 220
Query: 502 NLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISG 561
           NL  L L+ N                        +LK I  L S + L +LDL++NQIS 
Sbjct: 221 NLDELSLNGN------------------------QLKDIGTLASLTNLTDLDLANNQISN 256
Query: 562 EIP 564
             P
Sbjct: 257 LAP 259

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 119/243 (48%), Gaps = 47/243 (19%)
Query: 325 DSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLD 384
           D +  L NL++++ +   L+   P  L  LT+LV + +++N+     P  +++ NLT L 
Sbjct: 62  DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLT-NLTGLT 118
Query: 385 LSNNALPGAISSTD-WEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPI 443
           L NN     I+  D  ++L+NL  ++L +N +  S   +L  +  LQQL      FG  +
Sbjct: 119 LFNNQ----ITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL-----SFGNQV 167
Query: 444 PEFSN-ASYSALDTLDLSANRLEGPIPMSIF-ELKNLKILMLSSNKLNGTVQLAAIQRLR 501
            +    A+ + L+ LD+S+N++     +S+  +L NL+ L+ ++N+++    L     L 
Sbjct: 168 TDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGI---LT 221
Query: 502 NLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISG 561
           NL  L L+ N                        +LK I  L S + L +LDL++NQIS 
Sbjct: 222 NLDELSLNGN------------------------QLKDIGTLASLTNLTDLDLANNQISN 257
Query: 562 EIP 564
             P
Sbjct: 258 LAP 260

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 120/242 (49%), Gaps = 44/242 (18%)
Query: 325 DSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLD 384
           D +  L NL++++ +   L+   P  L  LT+LV + +++N+     P  +++ NLT L 
Sbjct: 57  DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLT-NLTGLT 113
Query: 385 LSNNALPGAISSTD-WEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPI 443
           L NN     I+  D  ++L+NL  ++L +N +  S   +L  +  LQQL  ++N+     
Sbjct: 114 LFNNQ----ITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFSSNQVTDLK 167
Query: 444 PEFSNASYSALDTLDLSANRLEGPIPMSIF-ELKNLKILMLSSNKLNGTVQLAAIQRLRN 502
           P    A+ + L+ LD+S+N++     +S+  +L NL+ L+ ++N+++    L     L N
Sbjct: 168 PL---ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGI---LTN 218
Query: 503 LIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGE 562
           L  L L+ N                        +LK I  L S + L +LDL++NQIS  
Sbjct: 219 LDELSLNGN------------------------QLKDIGTLASLTNLTDLDLANNQISNL 254
Query: 563 IP 564
            P
Sbjct: 255 AP 256

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 119/243 (48%), Gaps = 47/243 (19%)
Query: 325 DSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLD 384
           D +  L NL++++ +   L+   P  L  LT+LV + +++N+     P  +++ NLT L 
Sbjct: 57  DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLT-NLTGLT 113
Query: 385 LSNNALPGAISSTD-WEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPI 443
           L NN     I+  D  ++L+NL  ++L +N +  S   +L  +  LQQL      FG  +
Sbjct: 114 LFNNQ----ITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL-----NFGNQV 162
Query: 444 PEFSN-ASYSALDTLDLSANRLEGPIPMSIF-ELKNLKILMLSSNKLNGTVQLAAIQRLR 501
            +    A+ + L+ LD+S+N++     +S+  +L NL+ L+ ++N+++    L     L 
Sbjct: 163 TDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGI---LT 216
Query: 502 NLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISG 561
           NL  L L+ N                        +LK I  L S + L +LDL++NQIS 
Sbjct: 217 NLDELSLNGN------------------------QLKDIGTLASLTNLTDLDLANNQISN 252
Query: 562 EIP 564
             P
Sbjct: 253 LAP 255

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 120/242 (49%), Gaps = 44/242 (18%)
Query: 325 DSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLD 384
           D +  L NL++++ +   L+   P  L  LT+LV + +++N+     P  +++ NLT L 
Sbjct: 57  DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLT-NLTGLT 113
Query: 385 LSNNALPGAISSTD-WEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPI 443
           L NN     I+  D  ++L+NL  ++L +N +  S   +L  +  LQQL  ++N+     
Sbjct: 114 LFNNQ----ITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFSSNQVTDLK 167
Query: 444 PEFSNASYSALDTLDLSANRLEGPIPMSIF-ELKNLKILMLSSNKLNGTVQLAAIQRLRN 502
           P    A+ + L+ LD+S+N++     +S+  +L NL+ L+ ++N+++    L     L N
Sbjct: 168 PL---ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGI---LTN 218
Query: 503 LIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGE 562
           L  L L+ N                        +LK I  L S + L +LDL++NQIS  
Sbjct: 219 LDELSLNGN------------------------QLKDIGTLASLTNLTDLDLANNQISNL 254
Query: 563 IP 564
            P
Sbjct: 255 AP 256

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 119/243 (48%), Gaps = 47/243 (19%)
Query: 325 DSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLD 384
           D +  L NL++++ +   L+   P  L  LT+LV + +++N+     P  +++ NLT L 
Sbjct: 57  DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLT-NLTGLT 113
Query: 385 LSNNALPGAISSTD-WEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPI 443
           L NN     I+  D  ++L+NL  ++L +N +  S   +L  +  LQQL      FG  +
Sbjct: 114 LFNNQ----ITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL-----NFGNQV 162
Query: 444 PEFSN-ASYSALDTLDLSANRLEGPIPMSIF-ELKNLKILMLSSNKLNGTVQLAAIQRLR 501
            +    A+ + L+ LD+S+N++     +S+  +L NL+ L+ ++N+++    L     L 
Sbjct: 163 TDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGI---LT 216
Query: 502 NLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISG 561
           NL  L L+ N                        +LK I  L S + L +LDL++NQIS 
Sbjct: 217 NLDELSLNGN------------------------QLKDIGTLASLTNLTDLDLANNQISN 252
Query: 562 EIP 564
             P
Sbjct: 253 LAP 255

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 120/242 (49%), Gaps = 44/242 (18%)
Query: 325 DSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLD 384
           D +  L NL++++ +   L+   P  L  LT+LV + +++N+     P  +++ NLT L 
Sbjct: 57  DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLT-NLTGLT 113
Query: 385 LSNNALPGAISSTD-WEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPI 443
           L NN     I+  D  ++L+NL  ++L +N +  S   +L  +  LQQL  ++N+     
Sbjct: 114 LFNNQ----ITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLNFSSNQVTDLK 167
Query: 444 PEFSNASYSALDTLDLSANRLEGPIPMSIF-ELKNLKILMLSSNKLNGTVQLAAIQRLRN 502
           P    A+ + L+ LD+S+N++     +S+  +L NL+ L+ ++N+++    L     L N
Sbjct: 168 PL---ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGI---LTN 218
Query: 503 LIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGE 562
           L  L L+ N                        +LK I  L S + L +LDL++NQIS  
Sbjct: 219 LDELSLNGN------------------------QLKDIGTLASLTNLTDLDLANNQISNL 254
Query: 563 IP 564
            P
Sbjct: 255 AP 256

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1042
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-79
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-76
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-96
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-84
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-84
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-82
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-81
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-77
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-69
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-64
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-54
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-48
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-76
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-71
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-67
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-63
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-59
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-72
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-70
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-68
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-56
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-47
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-71
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-56
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-55
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-55
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-53
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-39
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-66
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-66
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-63
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-59
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-58
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-44
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-53
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-53
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-46
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-46
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-50
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-46
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-45
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-44
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-30
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-43
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-43
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-41
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-40
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-40
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-36
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-36
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-36
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-36
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-34
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-33
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-33
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-31
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-32
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-31
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-28
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-28
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-28
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-27
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-28
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-24
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-21
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-21
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-21
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-16
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-10
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	5e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  552 bits (1426), Expect = 0.0
 Identities = 206/763 (26%), Positives = 325/763 (42%), Gaps = 89/763 (11%)

Query: 260 NLTSLNLSSSGLN---GTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSY 316
            +TS++LSS  LN        ++L +  L++L LS + +  GS+  F  ++SL +L LS 
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHI-NGSVSGFKCSASLTSLDLSR 109

Query: 317 ANFSGVLPD--SIGNLKNLSRLDLARCNLSGSIPTS-LAKLTQLVYLDLSSNKFVGPIPS 373
            + SG +    S+G+   L  L+++   L      S   KL  L  LDLS+N   G    
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 374 LHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLL 433
                                     +    L ++ +  N ++G +   +     L+ L 
Sbjct: 170 ---------------------GWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLD 206

Query: 434 LANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQ 493
           +++N F   IP   + S  AL  LD+S N+L G    +I     LK+L +SSN+  G + 
Sbjct: 207 VSSNNFSTGIPFLGDCS--ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264

Query: 494 LAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLD 553
                 L++L  L L+ N  T         P  +                 +   L  LD
Sbjct: 265 PL---PLKSLQYLSLAENKFT------GEIPDFLSG------------ACDT---LTGLD 300

Query: 554 LSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGN 613
           LS N   G +P +        LE L LS N  S      ++  +  + VLDL  N+  G 
Sbjct: 301 LSGNHFYGAVPPFFGSCSL--LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358

Query: 614 IPHP----PRNAVLVDYSNNSFTSSIPGDIGNSMNFTI-FFSLSSNSITGVIPETICRAK 668
           +P        + + +D S+N+F+  I  ++  +   T+    L +N  TG IP T+    
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418

Query: 669 YLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQ 728
            L+ L LS N LSG +P+ L  +S  L  L L  N L G +         L+TL L+ N 
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477

Query: 729 LGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDD 788
           L G +P  L+NC  L  + L NN++    P W+  + +L +L L +NSF G+I       
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG-- 535

Query: 789 SWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDE-------------AQSNFKDVHFE 835
               L  +D+ +N F G +P         + ++                 + +      E
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595

Query: 836 L----------LTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRL 885
                      L+     ++ +  + G              +D S N   G IP++IG +
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655

Query: 886 KSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNN 945
             L+ LN   N   G IP  +G+L+ L  LDLS N L  +IP  ++ LT L+ ++LS+NN
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715

Query: 946 LEGNIPVSTQLQSFSPTSFEGNEGLCGAPLNVCPPNSSKALPS 988
           L G IP   Q ++F P  F  N GLCG PL  C P+++     
Sbjct: 716 LSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAH 758

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  275 bits (705), Expect = 2e-79
 Identities = 131/560 (23%), Positives = 210/560 (37%), Gaps = 129/560 (23%)

Query: 401 HLSNLVYVDLRNNALN---GSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTL 457
               +  +DL +  LN    ++  SL S+  L+ L L+N+   G +  F  +  ++L +L
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCS--ASLTSL 105

Query: 458 DLSANRLEGPIP--MSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTV 515
           DLS N L GP+    S+     LK L +SSN L+   +++   +L +L  L+LS N+++ 
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS- 164

Query: 516 NASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGL 575
                 +                +        +L +L +S N+ISG++      +     
Sbjct: 165 -----GANVVG----------WVLSDGC---GELKHLAISGNKISGDVD-----VSR--- 198

Query: 576 EYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSI 635
                      +L+             LD+ SN     IP                    
Sbjct: 199 ---------CVNLE------------FLDVSSNNFSTGIP-------------------- 217

Query: 636 PGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDIL 695
              +G+         +S N ++G     I     L +L++S+N+  G +P   +K    L
Sbjct: 218 --FLGDCSALQ-HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKS---L 271

Query: 696 GVLNLRGNSLSGTLSVTFPGNCG-LQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIR 754
             L+L  N  +G +     G C  L  LDL+ N   G VP    +C  LE L L +N   
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331

Query: 755 DTFPC-WLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCIT 813
              P   L  +  L+VL L  N F G +      +    L  +D++SNNF G +      
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELP-ESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390

Query: 814 SWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNN 873
           + K  +                                               +    N 
Sbjct: 391 NPKNTL---------------------------------------------QELYLQNNG 405

Query: 874 FDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANL 933
           F G IP  +     L  L+ S N   G IPS++G+L +L  L L +N L  +IP +L  +
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465

Query: 934 TFLSVLNLSHNNLEGNIPVS 953
             L  L L  N+L G IP  
Sbjct: 466 KTLETLILDFNDLTGEIPSG 485

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  266 bits (683), Expect = 2e-76
 Identities = 137/491 (27%), Positives = 209/491 (42%), Gaps = 48/491 (9%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFA 140
           L L+E   +G I +     +   L  L+L+ N F    +P   G+ + L  L LS+  F+
Sbjct: 274 LSLAENKFTGEIPDFL-SGACDTLTGLDLSGNHFYGA-VPPFFGSCSLLESLALSSNNFS 331

Query: 141 GQIPIQV-SAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPG 199
           G++P+     M  L  LDLS +  F G L     NLS      A L  L L   N S P 
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFN-EFSGELPESLTNLS------ASLLTLDLSSNNFSGP- 383

Query: 200 I--EWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLAD 257
           I    CQ   +    L+ L L +   +G I P+L+    L  + L  N LS  +P  L  
Sbjct: 384 ILPNLCQNPKN---TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440

Query: 258 FFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPD-FPKNSSLRTLMLSY 316
              L  L L  + L G  P+ ++ V TL+TL L  N  L G +P      ++L  + LS 
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND-LTGEIPSGLSNCTNLNWISLSN 499

Query: 317 ANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPS-LH 375
              +G +P  IG L+NL+ L L+  + SG+IP  L     L++LDL++N F G IP+ + 
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559

Query: 376 MSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLA 435
                   +         I +   + +    +         G     L  +       + 
Sbjct: 560 KQSGKIAANFIAGKRYVYIKN---DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616

Query: 436 NNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLA 495
           +  +GG      + +  ++  LD+S N L G IP  I  +  L IL L  N ++G++   
Sbjct: 617 SRVYGGHTSPTFD-NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP-D 674

Query: 496 AIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIP-NLKSQSKLFNLDL 554
            +  LR L  L+LS N L     G                    IP  + + + L  +DL
Sbjct: 675 EVGDLRGLNILDLSSNKL----DG-------------------RIPQAMSALTMLTEIDL 711

Query: 555 SDNQISGEIPN 565
           S+N +SG IP 
Sbjct: 712 SNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.2 bits (157), Expect = 1e-10
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 883 GRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLS 942
            ++ S+   +   N     + S++ +L  LESL LS +H++  +         L+ L+LS
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLS 108

Query: 943 HNNLEGNIPVSTQLQSFS 960
            N+L G +   T L S S
Sbjct: 109 RNSLSGPVTTLTSLGSCS 126

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.3 bits (121), Expect = 3e-06
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 79  IGLDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAG 138
             L+L    ISG I +   +  L+ L  L+L+ N  +   IP  +  LT LT ++LSN  
Sbjct: 659 FILNLGHNDISGSIPDE--VGDLRGLNILDLSSNKLDG-RIPQAMSALTMLTEIDLSNNN 715

Query: 139 FAGQIP 144
            +G IP
Sbjct: 716 LSGPIP 721

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  319 bits (820), Expect = 2e-96
 Identities = 136/688 (19%), Positives = 245/688 (35%), Gaps = 70/688 (10%)

Query: 284 TLQTLDLSGNSLLRGSLPDFPKN--SSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARC 341
           + +  D S   L +      P +  +++  L L++     +   +      L+ LD+   
Sbjct: 5   SHEVADCSHLKLTQ-----VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 342 NLSGSIPTSLAKLTQLVYLDLSSNKFVGPIP-SLHMSKNLTHLDLSNNALPGAISSTDWE 400
            +S   P    KL  L  L+L  N+       +     NLT L L +N++    ++  + 
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP-FV 118

Query: 401 HLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPE-FSNASYSALDTLDL 459
              NL+ +DL +N L+ +   +   +  LQ+LLL+NNK      E     + S+L  L+L
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 460 SANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQ--LAAIQRLRNLIRLELSYNNLTVNA 517
           S+N+++   P     +  L  L L++ +L  ++   L       ++  L LS + L+  +
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

Query: 518 SGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEY 577
           +                        LK  + L  LDLS N ++    +    +    LEY
Sbjct: 239 NT-------------------TFLGLK-WTNLTMLDLSYNNLNVVGNDSFAWLPQ--LEY 276

Query: 578 LNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPG 637
             L +N +  L   +S+  L  +  L+L  +  + +I            S  S       
Sbjct: 277 FFLEYNNIQHLF-SHSLHGLFNVRYLNLKRSFTKQSI------------SLASLPKIDDF 323

Query: 638 DIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDI--- 694
                       ++  N I G+          L  L LSN+  S +  T    +S     
Sbjct: 324 SFQWLKCLE-HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382

Query: 695 LGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKS-LANCRKLEVLDLGNNKI 753
           L +LNL  N +S   S  F     L+ LDL  N++G  +          +  + L  NK 
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442

Query: 754 RDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCIT 813
                     + SL+ L+LR  +     +          L I+D+++NN    +    + 
Sbjct: 443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLE 501

Query: 814 SWKAMMSDEDEAQSNFKDVHFEL-LTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRN 872
             + +                 L L       +      G  +  +K LS    ++   N
Sbjct: 502 GLEKLE---------------ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546

Query: 873 NFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLA- 931
            FD    E    L  L  ++   N       S   N   L+SL+L  N ++         
Sbjct: 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606

Query: 932 NLTFLSVLNLSHNNLEGNIPVSTQLQSF 959
               L+ L++  N  +          ++
Sbjct: 607 AFRNLTELDMRFNPFDCTCESIAWFVNW 634

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  286 bits (733), Expect = 3e-84
 Identities = 138/644 (21%), Positives = 226/644 (35%), Gaps = 57/644 (8%)

Query: 168 LKLENPNLSGLLQNLAE-LRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGP 226
               +  L+ +  +L   +  L L    +           +    +L  L +    +S  
Sbjct: 9   ADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAA---NFTRY-SQLTSLDVGFNTISKL 64

Query: 227 IHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQ 286
                 KL  L V+ L  N+LS    +  A   NLT L+L S+ +        ++   L 
Sbjct: 65  EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124

Query: 287 TLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKN--LSRLDLARCNLS 344
           TLDLS N L    L    +  +L+ L+LS      +  + +    N  L +L+L+   + 
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184

Query: 345 GSIPTSLAKLTQLVYLDLSSNKFVGPIPS----LHMSKNLTHLDLSNNALPGAISST-DW 399
              P     + +L  L L++ +    +         + ++ +L LSN+ L    ++T   
Sbjct: 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244

Query: 400 EHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPE-FSNAS-------Y 451
              +NL  +DL  N LN     S   +P L+   L  N                      
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304

Query: 452 SALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYN 511
            +     +S   L      S   LK L+ L +  N + G ++      L NL  L LS +
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNS 363

Query: 512 NLTVNASGDSSFP----SQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEIPN 565
             ++    + +F     S +  L L   K+  I +        L  LDL  N+I  E+  
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

Query: 566 WVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVD 625
             W  G   +  + LS+N    L    S + +  +  L L    L+              
Sbjct: 424 QEWR-GLENIFEIYLSYNKYLQLT-RNSFALVPSLQRLMLRRVALKNVD----------- 470

Query: 626 YSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLS---- 681
                   S P       N TI   LS+N+I  +  + +   + L +LDL +N L+    
Sbjct: 471 --------SSPSPFQPLRNLTI-LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWK 521

Query: 682 ---GKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLA 738
                 P   +K    L +LNL  N         F     L+ +DL  N L         
Sbjct: 522 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581

Query: 739 NCRKLEVLDLGNNKIRDTFPCWL-KNISSLRVLVLRSNSFYGSI 781
           N   L+ L+L  N I             +L  L +R N F  + 
Sbjct: 582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  286 bits (733), Expect = 3e-84
 Identities = 137/659 (20%), Positives = 236/659 (35%), Gaps = 74/659 (11%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFA 140
            D S   ++       P      +  LNL  N        +     + LT L++     +
Sbjct: 9   ADCSHLKLT-----QVPDDLPTNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTIS 62

Query: 141 GQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGI 200
              P     +  L  L+L  +       +L   +          L  L+L   +I    I
Sbjct: 63  KLEPELCQKLPMLKVLNLQHN-------ELSQLS-DKTFAFCTNLTELHLMSNSIQ--KI 112

Query: 201 EWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFN 260
           +           L  L LS   LS     +  +L++L  + L  N + +   E L  F N
Sbjct: 113 KN-NPFVKQ-KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170

Query: 261 --LTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSL---LRGSLPDFPKNSSLRTLMLS 315
             L  L LSS+ +    P     +  L  L L+   L   L   L     N+S+R L LS
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230

Query: 316 YANFSGVLPDSIGNLK--NLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPS 373
            +  S     +   LK  NL+ LDL+  NL+     S A L QL Y  L  N        
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290

Query: 374 ----------LHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSL 423
                     L++ ++ T   +S  +LP     + ++ L  L ++++ +N + G      
Sbjct: 291 SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMF 349

Query: 424 FSIPMLQQLLLANNKFGGPIPE---FSNASYSALDTLDLSANRLEGPIPMSIFELKNLKI 480
             +  L+ L L+N+           F + ++S L  L+L+ N++      +   L +L++
Sbjct: 350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409

Query: 481 LMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVI 540
           L L  N++   +     + L N+  + LSYN          +    ++ L L    LK +
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469

Query: 541 PN----LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQR------ 590
            +     +    L  LDLS+N I+    + +  +    LE L+L HN L+ L +      
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK--LEILDLQHNNLARLWKHANPGG 527

Query: 591 -PYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFF 649
             Y +  L+ + +L+L                      +N F         +     I  
Sbjct: 528 PIYFLKGLSHLHILNL---------------------ESNGFDEIPVEVFKDLFELKIID 566

Query: 650 SLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGT 708
            L  N++  +          L  L+L  N ++             L  L++R N    T
Sbjct: 567 -LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  280 bits (718), Expect = 4e-82
 Identities = 133/625 (21%), Positives = 233/625 (37%), Gaps = 43/625 (6%)

Query: 213 LRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLN 272
             V   S   L+         +  L+   L  N L          +  LTSL++  + ++
Sbjct: 6   HEVADCSHLKLTQVPDDLPTNITVLN---LTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 273 GTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKN 332
              PE   ++  L+ L+L  N L + S   F   ++L  L L   +   +  +     KN
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

Query: 333 LSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIP---SLHMSKNLTHLDLSNNA 389
           L  LDL+   LS +   +  +L  L  L LS+NK          +  + +L  L+LS+N 
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182

Query: 390 LPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLF---SIPMLQQLLLANNKFGGPIPE- 445
           +    S   +  +  L  + L N  L  S+   L    +   ++ L L+N++        
Sbjct: 183 IKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 446 FSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIR 505
           F    ++ L  LDLS N L      S   L  L+   L  N +   +   ++  L N+  
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH-LFSHSLHGLFNVRY 300

Query: 506 LELSYNNLTVNASGDS---------SFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDL 554
           L L  +    + S  S          +   +  L +    +  I +        L  L L
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360

Query: 555 SDNQIS-GEIPNWVWE-IGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQG 612
           S++  S   + N  +  + +  L  LNL+ N +S ++   + S L  + VLDL  N++  
Sbjct: 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE-SDAFSWLGHLEVLDLGLNEIGQ 419

Query: 613 NIPHPP----RNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGV--IPETICR 666
            +         N   +  S N +            +      L   ++  V   P     
Sbjct: 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR-LMLRRVALKNVDSSPSPFQP 478

Query: 667 AKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCG-------- 718
            + L +LDLSNN ++      L  +   L +L+L+ N+L+       PG           
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEK-LEILDLQHNNLARLWKHANPGGPIYFLKGLSH 537

Query: 719 LQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFY 778
           L  L+L  N       +   +  +L+++DLG N +         N  SL+ L L+ N   
Sbjct: 538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597

Query: 779 GSITCRENDDSWPMLQIVDIASNNF 803
                +    ++  L  +D+  N F
Sbjct: 598 SVEK-KVFGPAFRNLTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  122 bits (308), Expect = 1e-28
 Identities = 60/350 (17%), Positives = 105/350 (30%), Gaps = 62/350 (17%)

Query: 81  LDLSEESISGRIDNSSPL--LSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAG 138
           L LS    S R   +     L+   L  LNL  N  +          L +L  L+L    
Sbjct: 358 LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS-KIESDAFSWLGHLEVLDLGLNE 416

Query: 139 FAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAP 198
              ++                                    + L  +  +YL        
Sbjct: 417 IGQELT-------------------------------GQEWRGLENIFEIYLSYNKYLQL 445

Query: 199 GIEWCQALSSLVPKLRVLSLSSCYLSGPIHP--SLAKLQSLSVICLDQNDLSSPVPEFLA 256
                  +    P L+ L L    L            L++L+++ L  N++++   + L 
Sbjct: 446 TRNSFALV----PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501

Query: 257 DFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSY 316
               L  L+L  + L                  L  ++   G +      S L  L L  
Sbjct: 502 GLEKLEILDLQHNNLA----------------RLWKHANPGGPIYFLKGLSHLHILNLES 545

Query: 317 ANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSL-- 374
             F  +  +   +L  L  +DL   NL+    +       L  L+L  N        +  
Sbjct: 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605

Query: 375 HMSKNLTHLDLSNNALPGAISS----TDWEHLSNLVYVDLRNNALNGSIP 420
              +NLT LD+  N       S     +W + ++    +L ++ L  + P
Sbjct: 606 PAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPP 655

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  277 bits (711), Expect = 1e-81
 Identities = 101/597 (16%), Positives = 194/597 (32%), Gaps = 69/597 (11%)

Query: 47  FNSSLSFRMVQWSQSTDCCTWC---GVDCDEAGRVIGLDLSEESISGRIDNSSPLLSLKY 103
                +     W+ + +   W    GV  +  GRV GL L     SGR+ ++  +  L  
Sbjct: 49  QQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDA--IGQLTE 106

Query: 104 LQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYS 163
           L+ L L  +     E   G   ++                   V    R    DL     
Sbjct: 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166

Query: 164 FGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYL 223
              P +      S +     ++  L  +   +S        A+  L  KLR   + +   
Sbjct: 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSK-------AVMRL-TKLRQFYMGNSPF 218

Query: 224 SGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVH 283
                    + ++                    +  +LT + + +       P  +  + 
Sbjct: 219 VAENICEAWENENSEY-----AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273

Query: 284 TLQTLDLSGNSLLRG--------SLPDFPKNSSLRTLMLSYANF-SGVLPDSIGNLKNLS 334
            +Q ++++ N  + G        +L D P    ++ + + Y N  +  +  S+  +K L 
Sbjct: 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLG 333

Query: 335 RLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSL-HMSKNLTHLDLSNNALPGA 393
            L+     L G +P +     +L  L+L+ N+      +    ++ + +L  ++N L   
Sbjct: 334 MLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI 392

Query: 394 ISSTDWEHLSNLVYVDLRNNALNG-------SIPRSLFSIPMLQQLLLANNKFGGPIPE- 445
            +  D + +S +  +D   N +          +  + F    +  + L+NN+      E 
Sbjct: 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL 452

Query: 446 FSNASYSALDTLDLSANRLEG-------PIPMSIFELKNLKILMLSSNKLNGTVQLAAIQ 498
           FS    S L +++L  N L             +      L  + L  NKL          
Sbjct: 453 FSTG--SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510

Query: 499 RLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQ 558
            L  L+ ++LSYN+ +        FP+Q                LK        D   N+
Sbjct: 511 TLPYLVGIDLSYNSFS-------KFPTQPLNSS----------TLKGFGIRNQRDAQGNR 553

Query: 559 ISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIP 615
              E P  +    +  L  L +  N +  +     I     ++VLD+  N       
Sbjct: 554 TLREWPEGITLCPS--LTQLQIGSNDIRKV--NEKI--TPNISVLDIKDNPNISIDL 604

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  264 bits (677), Expect = 6e-77
 Identities = 96/627 (15%), Positives = 195/627 (31%), Gaps = 100/627 (15%)

Query: 123 LGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNL 182
           L +   +T L+L   G +G++P  +  +T L  L L S              +S  +   
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANM--- 133

Query: 183 AELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQ--SLSVI 240
                                                  +          +     L   
Sbjct: 134 -----------------------------SDEQKQKMRMHYQKTFVDYDPREDFSDLIKD 164

Query: 241 CLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSL 300
           C++ +     + +        T +   S+ +     + ++++  L+   +  +  +  ++
Sbjct: 165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENI 223

Query: 301 PDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYL 360
                  +       YA           NLK+L+ +++  C     +PT L  L ++  +
Sbjct: 224 C-----EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278

Query: 361 DLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNAL-NGSI 419
           +++ N+ +         + L    +                   +  + +  N L    +
Sbjct: 279 NVACNRGISGEQLKDDWQALADAPV----------------GEKIQIIYIGYNNLKTFPV 322

Query: 420 PRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFE-LKNL 478
             SL  +  L  L    N+  G +P F +     L +L+L+ N++   IP +     + +
Sbjct: 323 ETSLQKMKKLGMLECLYNQLEGKLPAFGSE--IKLASLNLAYNQITE-IPANFCGFTEQV 379

Query: 479 KILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLK 538
           + L  + NKL     +   + +  +  ++ SYN +       S        L     K  
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG------SVDGKNFDPLDPTPFKGI 433

Query: 539 VIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQR------PY 592
                     + +++LS+NQIS              L  +NL  N+L+ + +        
Sbjct: 434 ---------NVSSINLSNNQISKFPKELFSTGSP--LSSINLMGNMLTEIPKNSLKDENE 482

Query: 593 SISDLNLMTVLDLHSNQLQGNIPHPPRNAVLV-----DYSNNSFTSSIPGDIGNSMNFTI 647
           +  +  L+T +DL  N+L   +    R   L      D S NSF+   P    NS     
Sbjct: 483 NFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFS-KFPTQPLNSSTLKG 540

Query: 648 F-----FSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRG 702
           F          N      PE I     L  L + +N +              + VL+++ 
Sbjct: 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPN----ISVLDIKD 596

Query: 703 NSLSGTLSVTFPGNCGLQTLDLNENQL 729
           N                    L  ++ 
Sbjct: 597 NPNISIDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  242 bits (619), Expect = 5e-69
 Identities = 91/546 (16%), Positives = 174/546 (31%), Gaps = 77/546 (14%)

Query: 260 NLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPK----NSSLRTLMLS 315
            +T L+L   G +G  P+ I Q+  L+ L L  +          PK    N S       
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 316 YANFSGVLPDSIGNLK--NLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPS 373
             ++     D        +L +  +       SI  S     +   +   SN       +
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA 201

Query: 374 LHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLL 433
           +     L    + N+          WE+ +              +      ++  L  + 
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENEN------SEYAQQYKTEDLKWDNLKDLTDVE 255

Query: 434 LANNKFGGPIP-EFSNASYSALDTLDLSANRL--------EGPIPMSIFELKNLKILMLS 484
           + N      +P          +  ++++ NR         +          + ++I+ + 
Sbjct: 256 VYNCPNLTKLPTFLKALP--EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313

Query: 485 SNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLK 544
            N L       ++Q+++ L  LE  YN L                          +P   
Sbjct: 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLE-----------------------GKLPAFG 350

Query: 545 SQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLD 604
           S+ KL +L+L+ NQI+  IP          +E L+ +HN L  +   +    +++M+ +D
Sbjct: 351 SEIKLASLNLAYNQITE-IPANFCG-FTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAID 408

Query: 605 LHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETI 664
              N++                   +F   +       +N +   +LS+N I+    E  
Sbjct: 409 FSYNEIGSVDG-------------KNFDP-LDPTPFKGINVS-SINLSNNQISKFPKELF 453

Query: 665 CRAKYLLVLDLSNNKLSGKMPTCLIKMSDILG------VLNLRGNSLSGTLSVTFPGNC- 717
                L  ++L  N L+      L   ++          ++LR N L+            
Sbjct: 454 STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLP 513

Query: 718 GLQTLDLNENQLGGTVPKSLANCRKLEVLDLGN------NKIRDTFPCWLKNISSLRVLV 771
            L  +DL+ N      P    N   L+   + N      N+    +P  +    SL  L 
Sbjct: 514 YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572

Query: 772 LRSNSF 777
           + SN  
Sbjct: 573 IGSNDI 578

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  228 bits (584), Expect = 3e-64
 Identities = 78/660 (11%), Positives = 170/660 (25%), Gaps = 131/660 (19%)

Query: 305 KNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSG----SIPTSLAKLTQLVYL 360
            N  +  L L     SG +PD+IG L  L  L L             P  ++        
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 361 DLSSNKFVGPIPS---LHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNG 417
                 +              +L    ++++    +I  +          +   +N +  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS-RITLKDTQIGQLSNNI-T 196

Query: 418 SIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKN 477
            + +++  +  L+Q  + N+ F             A +  +    +      +    LK+
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENIC------EAWENENSEYAQQYKTEDLKWDNLKD 250

Query: 478 LKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKL 537
           L  + + +      +    ++ L  +  + ++ N           + +            
Sbjct: 251 LTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQLKDDWQA------------ 297

Query: 538 KVIPNLKSQSKLFNLDLSDNQI-SGEIPNWVWEIGN-GGLEYLNLSHNLLSSLQRPYSIS 595
             + +     K+  + +  N + +  +      +     L  L   +N L       +  
Sbjct: 298 --LADAPVGEKIQIIYIGYNNLKTFPVE---TSLQKMKKLGMLECLYNQLEGK--LPAFG 350

Query: 596 DLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNS 655
               +  L+L  NQ+                      + IP +           S + N 
Sbjct: 351 SEIKLASLNLAYNQI----------------------TEIPANFCGFTEQVENLSFAHNK 388

Query: 656 ITGVIPET-ICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFP 714
           +  +           +  +D S N++          +                       
Sbjct: 389 LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF------------------ 430

Query: 715 GNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRD-------TFPCWLKNISSL 767
               + +++L+ NQ+     +  +    L  ++L  N + +             KN   L
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490

Query: 768 RVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQS 827
             + LR N             + P L  +D++ N+F                        
Sbjct: 491 TSIDLRFNKLTKLSDDFRAT-TLPYLVGIDLSYNSFSK---------------------- 527

Query: 828 NFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKS 887
                     T                   +K   I    D   N      PE I    S
Sbjct: 528 --------FPTQPL------------NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567

Query: 888 LYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLE 947
           L  L    N     +   I     +  LD+  N         +       +  L ++  +
Sbjct: 568 LTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  198 bits (505), Expect = 9e-54
 Identities = 65/431 (15%), Positives = 136/431 (31%), Gaps = 41/431 (9%)

Query: 81  LDLSEESISGRIDNSS-PLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGF 139
             +            +    + +Y Q                   NL +LT + + N   
Sbjct: 211 FYMGNSPFVAENICEAWENENSEYAQQY---------KTEDLKWDNLKDLTDVEVYNCPN 261

Query: 140 AGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPG 199
             ++P  + A+  +  ++++ +    G    ++           +++ +Y+   N+    
Sbjct: 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321

Query: 200 IEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFF 259
           +E   +L  +  KL +L      L G + P+      L+ + L  N ++     F     
Sbjct: 322 VET--SLQKM-KKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTE 377

Query: 260 NLTSLNLSSSGLNGTFPET--ILQVHTLQTLDLSGNSL-------LRGSLPDFPKNSSLR 310
            + +L+ + + L    P       V  +  +D S N +            P   K  ++ 
Sbjct: 378 QVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436

Query: 311 TLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSG-------SIPTSLAKLTQLVYLDLS 363
           ++ LS    S    +       LS ++L    L+            +      L  +DL 
Sbjct: 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496

Query: 364 SNKFVGPIPSLHMSK--NLTHLDLSNNAL----PGAISSTDWEHLSNLVYVDLRNNALNG 417
            NK          +    L  +DLS N+        ++S+  +        D + N    
Sbjct: 497 FNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556

Query: 418 SIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKN 477
             P  +   P L QL + +N       + +      +  LD+  N         +     
Sbjct: 557 EWPEGITLCPSLTQLQIGSNDIRKVNEKIT----PNISVLDIKDNPNISIDLSYVCPYIE 612

Query: 478 LKILMLSSNKL 488
             + ML  +K 
Sbjct: 613 AGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  182 bits (464), Expect = 2e-48
 Identities = 68/518 (13%), Positives = 153/518 (29%), Gaps = 87/518 (16%)

Query: 454 LDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNL 513
           +  L L      G +P +I +L  L++L L S+      +L   + +   +  E      
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 514 TVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNG 573
                           +      +   P     S L    ++ +     I          
Sbjct: 143 ----------------MHYQKTFVDYDPREDF-SDLIKDCINSDPQQKSIKKS--SRITL 183

Query: 574 GLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTS 633
               +    N ++ +    ++  L  +    + ++                +        
Sbjct: 184 KDTQIGQLSNNITFV--SKAVMRLTKLRQFYMGNSPFVAENI--CEAWENENSEYAQQYK 239

Query: 634 SIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSG--KMPTCLIKM 691
           +      N  + T    + +      +P  +     + +++++ N+     ++      +
Sbjct: 240 TEDLKWDNLKDLTDV-EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298

Query: 692 SDI-----LGVLNLRGNSL-SGTLSVTFPGNCG-LQTLDLNENQLGGTVPKSLANCRKLE 744
           +D      + ++ +  N+L +  +  +       L  L+   NQL G +P +  +  KL 
Sbjct: 299 ADAPVGEKIQIIYIGYNNLKTFPVETSL-QKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356

Query: 745 VLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFG 804
            L+L  N+I +    +      +  L    N     I    +  S  ++  +D + N  G
Sbjct: 357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIG 415

Query: 805 GRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIF 864
                                      V  +    +             +    K +++ 
Sbjct: 416 S--------------------------VDGKNFDPL-------------DPTPFKGINV- 435

Query: 865 TSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGG-------PIPSTIGNLQQLESLDL 917
           +SI+ S N       E       L  +N   N                  N   L S+DL
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 918 SMNHLSDQIP--IQLANLTFLSVLNLSHNNLEGNIPVS 953
             N L+ ++    +   L +L  ++LS+N+     P  
Sbjct: 496 RFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ 531

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  116 bits (293), Expect = 5e-27
 Identities = 54/427 (12%), Positives = 113/427 (26%), Gaps = 110/427 (25%)

Query: 543 LKSQSKLFNLDLSDNQISGEIPNWVWEIGN-GGLEYLNLSHNLLSSLQR---PYSISDLN 598
           L S  ++  L L     SG +P+    IG    LE L L  +     +R   P  IS   
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPD---AIGQLTELEVLALGSHGEKVNERLFGPKGISANM 133

Query: 599 LMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITG 658
                       Q             D   +                     ++S+    
Sbjct: 134 SDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC--------------------INSDPQQK 173

Query: 659 VIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCG 718
            I ++         +   +N ++  +   +++++                          
Sbjct: 174 SIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTK------------------------- 207

Query: 719 LQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFY 778
           L+   +  +                E                  N+  L  + + +    
Sbjct: 208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKT-----EDLKWDNLKDLTDVEVYNCPNL 262

Query: 779 GSITCRENDDSW----PMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHF 834
             +       ++    P +Q++++A N                                 
Sbjct: 263 TKL------PTFLKALPEMQLINVACNRGIS----------------------------- 287

Query: 835 ELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNF-DGPIPEKIGRLKSLYGLNF 893
                        +    + +    +      I    NN    P+   + ++K L  L  
Sbjct: 288 ----------GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLEC 337

Query: 894 SQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVS 953
             N   G +P+  G+  +L SL+L+ N +++           +  L+ +HN L+  IP  
Sbjct: 338 LYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNI 395

Query: 954 TQLQSFS 960
              +S S
Sbjct: 396 FDAKSVS 402

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 88.6 bits (220), Expect = 4e-18
 Identities = 31/275 (11%), Positives = 76/275 (27%), Gaps = 45/275 (16%)

Query: 703 NSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIR----DTFP 758
           +       V+   N  +  L L      G VP ++    +LEVL LG++  +       P
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 759 CWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAM 818
             +    S          +  +    +  + +  L    I S+     + +         
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK--------- 177

Query: 819 MSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKI-LSIF-----TSIDFSRN 872
                 ++   KD     L++                 +  +  ++             +
Sbjct: 178 -----SSRITLKDTQIGQLSN----------------NITFVSKAVMRLTKLRQFYMGNS 216

Query: 873 NFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLAN 932
            F      +    ++       +            NL+ L  +++       ++P  L  
Sbjct: 217 PFVAENICEAWENENSEYAQQYKT-----EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271

Query: 933 LTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGN 967
           L  + ++N++ N       +    Q+ +       
Sbjct: 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.0 bits (125), Expect = 8e-07
 Identities = 13/62 (20%), Positives = 26/62 (41%)

Query: 892 NFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIP 951
           N   + +G     ++ +  ++  L L     S ++P  +  LT L VL L  +  + N  
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 952 VS 953
           + 
Sbjct: 123 LF 124

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  261 bits (670), Expect = 3e-76
 Identities = 118/556 (21%), Positives = 187/556 (33%), Gaps = 47/556 (8%)

Query: 242 LDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLP 301
           L  N L          F  L  L+LS   +          +  L TL L+GN +   +L 
Sbjct: 35  LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94

Query: 302 DFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNL-SGSIPTSLAKLTQLVYL 360
            F   SSL+ L+    N + +    IG+LK L  L++A   + S  +P   + LT L +L
Sbjct: 95  AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154

Query: 361 DLSSNKFVGPIPSL-----HMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNAL 415
           DLSSNK      +       M      LDLS N +              L  + LRNN  
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFD 212

Query: 416 NGSIPRSLF-SIPMLQQLLLANNKFGG--PIPEFSNASYSALDTLDLSANRLE------G 466
           + ++ ++    +  L+   L   +F     + +F  ++   L  L +   RL        
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 467 PIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQ 526
            I      L N+    L S  +    ++           LEL            +     
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIE---RVKDFSYNFGWQHLELVNCKFG---QFPTLKLKS 326

Query: 527 VRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLS 586
           ++ L   S K     +      L  LDLS N +S +      + G   L+YL+LS N + 
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 587 SLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFT 646
           ++    +   L  +  LD   + L+                           +  S+   
Sbjct: 387 TM--SSNFLGLEQLEHLDFQHSNLKQMSEF---------------------SVFLSLRNL 423

Query: 647 IFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLS 706
           I+  +S                 L VL ++ N         +      L  L+L    L 
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 707 GTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNI-S 765
                 F     LQ L+++ N               L+VLD   N I  +    L++  S
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543

Query: 766 SLRVLVLRSNSFYGSI 781
           SL  L L  N F  + 
Sbjct: 544 SLAFLNLTQNDFACTC 559

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  246 bits (631), Expect = 7e-71
 Identities = 100/564 (17%), Positives = 178/564 (31%), Gaps = 53/564 (9%)

Query: 262 TSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSG 321
            +            P+ +    + + LDLS N L       F     L+ L LS      
Sbjct: 10  ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 322 VLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIP-SLHMSKNL 380
           +   +  +L +LS L L    +      + + L+ L  L              +   K L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 381 THLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQ----QLLLAN 436
             L++++N +        + +L+NL ++DL +N +       L  +  +      L L+ 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 437 NKFGGPIPE-FSNASYSALDTLDLSANRLEGPIPMSIFE-LKNLKILMLSSNKLNGTVQL 494
           N      P  F       L  L L  N     +  +  + L  L++  L   +      L
Sbjct: 187 NPMNFIQPGAFKEIR---LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 495 AAIQR--LRNLIRLELSYNNLTVNASGDSSFPS------QVRTLRLASCKLKVIPNLKSQ 546
               +  L  L  L +    L                   V +  L S  ++ + +    
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303

Query: 547 SKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLH 606
               +L+L + +                L+ L  + N   +    +S  DL  +  LDL 
Sbjct: 304 FGWQHLELVNCKFGQFPTLK-----LKSLKRLTFTSNKGGN---AFSEVDLPSLEFLDLS 355

Query: 607 SNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICR 666
            N L                   SF          + +   +  LS N +   +      
Sbjct: 356 RNGL-------------------SFKGCCSQSDFGTTSLK-YLDLSFNGVIT-MSSNFLG 394

Query: 667 AKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNE 726
            + L  LD  ++ L       +      L  L++         +  F G   L+ L +  
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 727 NQLGGTV-PKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRE 785
           N       P      R L  LDL   ++    P    ++SSL+VL +  N+F+   T   
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT--F 512

Query: 786 NDDSWPMLQIVDIASNNFGGRVPQ 809
                  LQ++D + N+      Q
Sbjct: 513 PYKCLNSLQVLDYSLNHIMTSKKQ 536

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  237 bits (607), Expect = 1e-67
 Identities = 114/604 (18%), Positives = 197/604 (32%), Gaps = 43/604 (7%)

Query: 170 LENPNLSGLLQNLAE-LRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIH 228
               N   +  NL    + L L    +         +  S  P+L+VL LS C +     
Sbjct: 14  CMELNFYKIPDNLPFSTKNLDLSFNPLRH---LGSYSFFSF-PELQVLDLSRCEIQTIED 69

Query: 229 PSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTL 288
            +   L  LS + L  N + S      +   +L  L    + L       I  + TL+ L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 289 DLSGNSLLRGSLPD-FPKNSSLRTLMLSYANFSGVLPDSIGNLKNLS----RLDLARCNL 343
           +++ N +    LP+ F   ++L  L LS      +    +  L  +      LDL+   +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 344 SGSIPTSLAKLTQLVYLDLSSNKFVGPIP--SLHMSKNLTHLDLSNNALPGA--ISSTDW 399
           +   P +  K  +L  L L +N     +    +     L    L          +   D 
Sbjct: 190 NFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 400 EHLSNLVYVDLRNNALN------GSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSA 453
             L  L  + +    L         I      +  +    L +      + +FS      
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF--G 305

Query: 454 LDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNL 513
              L+L   +      +    LK+LK L  +SNK        +   L +L  L+LS N L
Sbjct: 306 WQHLELVNCKFGQFPTLK---LKSLKRLTFTSNKGGN---AFSEVDLPSLEFLDLSRNGL 359

Query: 514 TVNASGDSSF--PSQVRTLRLASCKLKVIP-NLKSQSKLFNLDLSDNQISGEIPNWVWEI 570
           +       S    + ++ L L+   +  +  N     +L +LD   + +       V+  
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL- 418

Query: 571 GNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPH----PPRNAVLVDY 626
               L YL++SH            + L+ + VL +  N  Q N         RN   +D 
Sbjct: 419 SLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 627 SNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPT 686
           S        P    +  +  +   +S N+   +          L VLD S N +      
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLN-MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536

Query: 687 CLIKMSDILGVLNLRGNSLSGTLSVT-FPGNC-GLQTLDLNENQLGGTVPKSLANCRKLE 744
            L      L  LNL  N  + T     F       + L +   ++    P        + 
Sbjct: 537 ELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG-MPVL 595

Query: 745 VLDL 748
            L++
Sbjct: 596 SLNI 599

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  225 bits (576), Expect = 2e-63
 Identities = 126/622 (20%), Positives = 220/622 (35%), Gaps = 80/622 (12%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFA 140
           LDLS   +      S    S   LQ L+L+      T       +L++L+ L L+     
Sbjct: 33  LDLSFNPLRHLGSYS--FFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 141 GQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGL----LQNLAELRALYLDGVNIS 196
                  S ++ L  L    +            NL+ L    + +L  L+ L +    I 
Sbjct: 90  SLALGAFSGLSSLQKLVAVET------------NLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 197 APGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVIC----LDQNDLSSPVP 252
               +  +  S+L   L  L LSS  +       L  L  + ++     L  N ++   P
Sbjct: 138 --SFKLPEYFSNL-TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 253 EFLADFFNLTSLNLSSSGLNGTFPETILQVHT-LQTLDLSGNSL-LRGSLPDFPKNS--- 307
               +   L  L L ++  +    +T +Q    L+   L        G+L  F K++   
Sbjct: 195 GAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253

Query: 308 ----SLRTLMLSYANFS-GVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDL 362
               ++    L+Y ++    + D    L N+S   L    +        +      +L+L
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLEL 311

Query: 363 SSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALN--GSIP 420
            + KF G  P+L + K+L  L  ++N    A S      L +L ++DL  N L+  G   
Sbjct: 312 VNCKF-GQFPTLKL-KSLKRLTFTSNKGGNAFSEV---DLPSLEFLDLSRNGLSFKGCCS 366

Query: 421 RSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIF-ELKNLK 479
           +S F    L+ L L+ N        F       L+ LD   + L+     S+F  L+NL 
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGL--EQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 480 ILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKV 539
            L +S               L +L  L+++ N+         +F   +            
Sbjct: 425 YLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQ------ENFLPDI------------ 465

Query: 540 IPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNL 599
                    L  LDLS  Q+    P     + +  L+ LN+SHN   SL   +    LN 
Sbjct: 466 ---FTELRNLTFLDLSQCQLEQLSPTAFNSLSS--LQVLNMSHNNFFSLD-TFPYKCLNS 519

Query: 600 MTVLDLHSNQLQGNIP----HPPRNAVLVDYSNNSFTSSIP-GDIGNSMNFTIFFSLSSN 654
           + VLD   N +  +      H P +   ++ + N F  +         +       +   
Sbjct: 520 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVE 579

Query: 655 SITGVIPETICRAKYLLVLDLS 676
            +    P    +   +L L+++
Sbjct: 580 RMECATPSDK-QGMPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  214 bits (546), Expect = 2e-59
 Identities = 117/674 (17%), Positives = 200/674 (29%), Gaps = 158/674 (23%)

Query: 287 TLDLSGNSLLRGSLPDFPKN--SSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLS 344
           T      +  +      P N   S + L LS+     +   S  +   L  LDL+RC + 
Sbjct: 11  TYQCMELNFYK-----IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 345 GSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSN 404
                +   L+ L  L L+ N                                 +  LS+
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGA------------------------FSGLSS 101

Query: 405 LVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKF-GGPIPE-FSNASYSALDTLDLSAN 462
           L  +      L       +  +  L++L +A+N      +PE FSN +   L+ LDLS+N
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT--NLEHLDLSSN 159

Query: 463 RLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSS 522
           +++      +  L  + +L LS                     L+LS N +         
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLS---------------------LDLSLNPMN-------- 190

Query: 523 FPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSH 582
                           + P    + +L  L L +N  S  +     + G  GLE   L  
Sbjct: 191 ---------------FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ-GLAGLEVHRLVL 234

Query: 583 NLLSSLQRPYSISDLNL--MTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIG 640
               +           L  +  L +   +L                  + +   I     
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLA---------------YLDYYLDDIIDLFN 279

Query: 641 NSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNL 700
              N + F SL S +I  V   +         L+L N K              +  +  L
Sbjct: 280 CLTNVSSF-SLVSVTIERVKDFSYNFG--WQHLELVNCKFGQ------FPTLKLKSLKRL 330

Query: 701 RGNSLSGTLSVTFPGNCGLQTLDLNENQLG--GTVPKSLANCRKLEVLDLGNNKIRDTFP 758
              S  G  + +      L+ LDL+ N L   G   +S      L+ LDL  N +  T  
Sbjct: 331 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMS 389

Query: 759 CWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAM 818
                +  L  L  + ++            S   L  +DI+  +                
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNG--------- 439

Query: 819 MSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPI 878
                          F  L+ +                          +  + N+F    
Sbjct: 440 --------------IFNGLSSL------------------------EVLKMAGNSFQENF 461

Query: 879 -PEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLS 937
            P+    L++L  L+ SQ       P+   +L  L+ L++S N+           L  L 
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521

Query: 938 VLNLSHNNLEGNIP 951
           VL+ S N++  +  
Sbjct: 522 VLDYSLNHIMTSKK 535

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.9 bits (169), Expect = 5e-12
 Identities = 16/89 (17%), Positives = 26/89 (29%)

Query: 865 TSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSD 924
            ++D S N               L  L+ S+            +L  L +L L+ N +  
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 925 QIPIQLANLTFLSVLNLSHNNLEGNIPVS 953
                 + L+ L  L     NL       
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFP 119

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.1 bits (141), Expect = 1e-08
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 865 TSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSD 924
            +      NF   IP+ +    S   L+ S N        +  +  +L+ LDLS   +  
Sbjct: 10  ITYQCMELNFYK-IPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 925 QIPIQLANLTFLSVLNLSHNNLEGNIP 951
                  +L+ LS L L+ N ++    
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLAL 93

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  256 bits (656), Expect = 3e-72
 Identities = 106/631 (16%), Positives = 198/631 (31%), Gaps = 100/631 (15%)

Query: 119 IPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGL 178
               L N   +T L+L+  G  G++P  +  +T L  L   +           +  L+  
Sbjct: 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPD 374

Query: 179 LQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLS 238
           +    + R             + + +       +L +  L    ++   +P +  ++  S
Sbjct: 375 MSEERKHRIR-----------MHYKKMFLDYDQRLNLSDLLQDAINR--NPEMKPIKKDS 421

Query: 239 VICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRG 298
            I L    +             +T +            + I ++  LQ +  + +     
Sbjct: 422 RISLKDTQI-------GNLTNRITFI-----------SKAIQRLTKLQIIYFANSPF--- 460

Query: 299 SLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLV 358
                            YA        S  NLK+L+ ++L  C     +P  L  L +L 
Sbjct: 461 --TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518

Query: 359 YLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNG- 417
            L+++ N+ +              L      L     +        +    +  N L   
Sbjct: 519 SLNIACNRGIS----------AAQLKADWTRLADDEDT-----GPKIQIFYMGYNNLEEF 563

Query: 418 SIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFE-LK 476
               SL  +  L  L   +NK    +  F       L  L L  N++E  IP        
Sbjct: 564 PASASLQKMVKLGLLDCVHNKVRH-LEAFGTN--VKLTDLKLDYNQIEE-IPEDFCAFTD 619

Query: 477 NLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCK 536
            ++ L  S NKL     +   + +  +  ++ SYN +       S      + +  ++  
Sbjct: 620 QVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST-- 677

Query: 537 LKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSL------QR 590
                          + LS N+I               +  + LS+NL++S+       +
Sbjct: 678 ---------------VTLSYNEIQKFPTELFATGSP--ISTIILSNNLMTSIPENSLKPK 720

Query: 591 PYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLV-----DYSNNSFTSSIPGDIGNSMNF 645
             +  +  L+T +DL  N+L   +    R   L      D S N F+ S P    NS   
Sbjct: 721 DGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQL 778

Query: 646 TIF-----FSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNL 700
             F          N I    P  I     L+ L + +N +  K+   L      L +L++
Sbjct: 779 KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLTPQ---LYILDI 834

Query: 701 RGNSLSGTLSVTFPGN--CGLQTLDLNENQL 729
             N        +       G+  L  ++ Q 
Sbjct: 835 ADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  250 bits (639), Expect = 6e-70
 Identities = 108/581 (18%), Positives = 199/581 (34%), Gaps = 84/581 (14%)

Query: 212 KLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGL 271
           ++  LSL+     G +  ++ +L  L V+    +  +     F  +             +
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 272 NGTFPETILQV-HTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNL 330
              + +  L     L   DL  +++ R                        +  DS  +L
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNP------------------EMKPIKKDSRISL 425

Query: 331 KNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNAL 390
           K+    +L   N    I  ++ +LT+L  +  +++ F     ++      +         
Sbjct: 426 KDTQIGNLT--NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE 483

Query: 391 PGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNAS 450
             + S     +L +L  V+L N      +P  L+ +P LQ L +A N+        ++ +
Sbjct: 484 ELSWS-----NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT 538

Query: 451 Y--------SALDTLDLSANRLEG-PIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLR 501
                      +    +  N LE  P   S+ ++  L +L    NK+     L A     
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR---HLEAFGTNV 595

Query: 502 NLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNL---DLSDNQ 558
            L  L+L YN +        +F  QV  L  +  KLK IPN+ +   ++ +   D S N+
Sbjct: 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK 655

Query: 559 ISGEIPNWVWEIGNGG---LEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIP 615
           I  E  N    + +        + LS+N +         +  + ++ + L +N +  +IP
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKF-PTELFATGSPISTIILSNNLMT-SIP 713

Query: 616 HPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPE-TICRAKYLLVLD 674
                         +      G+  N+   T    L  N +T +  +       YL  +D
Sbjct: 714 -------------ENSLKPKDGNYKNTYLLTTI-DLRFNKLTSLSDDFRATTLPYLSNMD 759

Query: 675 LSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVP 734
           +S N  S   PT  +  S  L    +R                     D   N++    P
Sbjct: 760 VSYNCFSS-FPTQPLNSSQ-LKAFGIRHQ------------------RDAEGNRILRQWP 799

Query: 735 KSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSN 775
             +  C  L  L +G+N IR      L     L +L +  N
Sbjct: 800 TGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADN 837

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  245 bits (626), Expect = 3e-68
 Identities = 93/608 (15%), Positives = 188/608 (30%), Gaps = 68/608 (11%)

Query: 58  WSQSTDCCTWC---GVDCDEAGRVIGLDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMF 114
           W+ + +   W    GVD D  GRV GL L+     GR+ ++  +  L  L+ L+   +  
Sbjct: 302 WNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDA--IGQLTELKVLSFGTHSE 359

Query: 115 NATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPN 174
             +    G   LT        +        + +    RL   DL        P       
Sbjct: 360 TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419

Query: 175 LSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKL 234
            S +      L+   +  +      I   +A+  L  KL+++  ++   +        + 
Sbjct: 420 DSRIS-----LKDTQIGNLTNRITFIS--KAIQRL-TKLQIIYFANSPFTYDNIAVDWED 471

Query: 235 QSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNS 294
            +                   ++  +LT + L +       P+ +  +  LQ+L+++ N 
Sbjct: 472 ANSD-----YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526

Query: 295 LLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSG-SIPTSLAK 353
                                       L D       +    +   NL       SL K
Sbjct: 527 G---------------ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK 571

Query: 354 LTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNN 413
           + +L  LD   NK    + +   +  LT L L  N +   I          +  +   +N
Sbjct: 572 MVKLGLLDCVHNKVRH-LEAFGTNVKLTDLKLDYNQI-EEIPEDFCAFTDQVEGLGFSHN 629

Query: 414 ALNGSIPRSLF--SIPMLQQLLLANNKFGGPIPE----FSNASYSALDTLDLSANRLEGP 467
            L   IP      S+ ++  +  + NK G           +       T+ LS N ++  
Sbjct: 630 KLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF 688

Query: 468 IPMSIFELKNLKILMLSSNKL------NGTVQLAAIQRLRNLIRLELSYNNLT-VNASGD 520
                     +  ++LS+N +      +   +    +    L  ++L +N LT ++    
Sbjct: 689 PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR 748

Query: 521 SSFPSQVRTLRLASCKLKVIP-------NLKSQSKLFNLDLSDNQISGEIPNWVWEIGNG 573
           ++    +  + ++       P        LK+       D   N+I  + P  +    + 
Sbjct: 749 ATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS- 807

Query: 574 GLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQ-----GNIPHPPRNAVLVDYSN 628
            L  L +  N +  +     +     + +LD+  N           P+      ++ Y  
Sbjct: 808 -LIQLQIGSNDIRKV--DEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862

Query: 629 NSFTSSIP 636
                   
Sbjct: 863 TQDIRGCD 870

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  210 bits (536), Expect = 1e-56
 Identities = 96/660 (14%), Positives = 175/660 (26%), Gaps = 129/660 (19%)

Query: 303 FPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDL 362
              N  +  L L+     G +PD+IG L  L  L     + + S      +       + 
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 363 SSNKFVGPIPS--LHMSKNLTHLDLSNNAL---PGAISSTDWEHLS-NLVYVDLRNNALN 416
             ++         L   + L   DL  +A+   P          +S     +    N + 
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI- 437

Query: 417 GSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELK 476
             I +++  +  LQ +  AN+ F               +  +    +      +S   LK
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVD------WEDANSDYAKQYENEELSWSNLK 491

Query: 477 NLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCK 536
           +L  + L +      +    +  L  L  L ++ N                 +       
Sbjct: 492 DLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGI--------------SAAQLKAD 536

Query: 537 LKVIPN-LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSIS 595
              + +   +  K+    +  N +  E P          L  L+  HN +  L+   +  
Sbjct: 537 WTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE---AFG 592

Query: 596 DLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNS 655
               +T L L  NQ+                        IP D     +       S N 
Sbjct: 593 TNVKLTDLKLDYNQI----------------------EEIPEDFCAFTDQVEGLGFSHNK 630

Query: 656 ITGVIPET-ICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFP 714
           +  +           +  +D S NK+       +    D    +N               
Sbjct: 631 LKYIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGINA-------------- 675

Query: 715 GNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRD-------TFPCWLKNISSL 767
                 T+ L+ N++     +  A    +  + L NN +               KN   L
Sbjct: 676 -----STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 768 RVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQS 827
             + LR N    S++      + P L  +D++ N F                        
Sbjct: 731 TTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFS----------------------- 766

Query: 828 NFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKS 887
                     T                   +K   I    D   N      P  I    S
Sbjct: 767 -------SFPTQPL------------NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807

Query: 888 LYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLE 947
           L  L    N     +   +    QL  LD++ N         +       +  L ++  +
Sbjct: 808 LIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  185 bits (471), Expect = 3e-48
 Identities = 97/687 (14%), Positives = 211/687 (30%), Gaps = 104/687 (15%)

Query: 305 KNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSS 364
             + L+ + ++Y   S    +          + +A C+ +  +P    ++        S 
Sbjct: 169 VTTELKGMKVTYKEDSKEHQNPDNANDKYMDIGVATCDSAVWLPAGTYQVVAYTTYSQSG 228

Query: 365 NKFVGPIPSLHMSKNLTHLD---LSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPR 421
            K           ++ T +D     +  +P  +  T  E++ +   +     AL+G    
Sbjct: 229 IKRSELETQSVRGESFTVIDNKLTKDANVPIQLKETA-EYIKDYKALKAIWEALDGK-NW 286

Query: 422 SLFSIPMLQQLLLANNKFGGPIPEFSNASYSALD------TLDLSANRLEGPIPMSIFEL 475
             +S  +   +   N  F   +  + +     LD       L L+    +G +P +I +L
Sbjct: 287 RYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQL 346

Query: 476 KNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASC 535
             LK+L   ++    + +L   + L   +  E  +            +  ++    L   
Sbjct: 347 TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406

Query: 536 KLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSIS 595
            +   P +K   K   + L D Q                   +    N ++ +    +I 
Sbjct: 407 AINRNPEMKPIKKDSRISLKDTQ-------------------IGNLTNRITFI--SKAIQ 445

Query: 596 DLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNS 655
            L  + ++   ++    +      +    +        +      N  + T    L +  
Sbjct: 446 RLTKLQIIYFANSPFTYDNI--AVDWEDANSDYAKQYENEELSWSNLKDLTDV-ELYNCP 502

Query: 656 ITGVIPETICRAKYLLVLDLSNNKLSG--KMPTCLIKMSDILG------VLNLRGNSLSG 707
               +P+ +     L  L+++ N+     ++     +++D         +  +  N+L  
Sbjct: 503 NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562

Query: 708 -TLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISS 766
              S +      L  LD   N++     ++     KL  L L  N+I +    +      
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQ 620

Query: 767 LRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQ 826
           +  L    N     I    N  S  ++  VD + N  G                      
Sbjct: 621 VEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS--------------------- 658

Query: 827 SNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLK 886
                       +I              M+  K ++  +++  S N       E      
Sbjct: 659 ---------EGRNIS-----------CSMDDYKGINA-STVTLSYNEIQKFPTELFATGS 697

Query: 887 SLYGLNFSQNAFG-------GPIPSTIGNLQQLESLDLSMNHLSDQIP--IQLANLTFLS 937
            +  +  S N           P      N   L ++DL  N L+  +    +   L +LS
Sbjct: 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLS 756

Query: 938 VLNLSHNNLEGNIPVS----TQLQSFS 960
            +++S+N      P      +QL++F 
Sbjct: 757 NMDVSYNCFSS-FPTQPLNSSQLKAFG 782

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  183 bits (466), Expect = 1e-47
 Identities = 85/686 (12%), Positives = 188/686 (27%), Gaps = 157/686 (22%)

Query: 293 NSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLA 352
           N        +   +S           +       + N   ++ L LA     G +P ++ 
Sbjct: 285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIG 344

Query: 353 KLTQLVYLDLSSNKFVGPIPSL-HMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLR 411
           +LT+L  L   ++                   +   + +         ++   L   DL 
Sbjct: 345 QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404

Query: 412 NNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMS 471
            +A+N +    +  I    ++ L + +                  +    NR+   I  +
Sbjct: 405 QDAINRN--PEMKPIKKDSRISLKDTQ------------------IGNLTNRITF-ISKA 443

Query: 472 IFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLR 531
           I  L  L+I+  +++               +       Y     N               
Sbjct: 444 IQRLTKLQIIYFANSPFTY------DNIAVDWEDANSDYAKQYENEEL------------ 485

Query: 532 LASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRP 591
                     NLK    L +++L +     ++P++++++    L+ LN++ N   S    
Sbjct: 486 -------SWSNLKD---LTDVELYNCPNMTQLPDFLYDLPE--LQSLNIACNRGISAA-- 531

Query: 592 YSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSL 651
                                                 +  + +  D        IF  +
Sbjct: 532 -----------------------------------QLKADWTRLADDEDTGPKIQIF-YM 555

Query: 652 SSNSITGVIPE-TICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLS 710
             N++       ++ +   L +LD  +NK+              L  L L  N +     
Sbjct: 556 GYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNVK-LTDLKLDYNQIEEIPE 612

Query: 711 VTFPGNCGLQTLDLNENQLGGTVPK--SLANCRKLEVLDLGNNKIRDTFPCWLKNIS--- 765
                   ++ L  + N+L   +P   +  +   +  +D   NKI         ++    
Sbjct: 613 DFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671

Query: 766 --SLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDED 823
             +   + L  N         E   +   +  + +++N                      
Sbjct: 672 GINASTVTLSYNEIQKFP--TELFATGSPISTIILSNNLM-------------------- 709

Query: 824 EAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKI- 882
              ++  +   +     +                     + T+ID   N     + +   
Sbjct: 710 ---TSIPENSLKPKDGNYKN-----------------TYLLTTIDLRFNKLTS-LSDDFR 748

Query: 883 -GRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSM------NHLSDQIPIQLANLTF 935
              L  L  ++ S N F    P+   N  QL++  +        N +  Q P  +     
Sbjct: 749 ATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807

Query: 936 LSVLNLSHNNLEGNIPVS--TQLQSF 959
           L  L +  N++   +      QL   
Sbjct: 808 LIQLQIGSNDIR-KVDEKLTPQLYIL 832

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 85.7 bits (212), Expect = 4e-17
 Identities = 46/330 (13%), Positives = 88/330 (26%), Gaps = 39/330 (11%)

Query: 639 IGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVL 698
           I N +       +        I +          LD  N +         I   +     
Sbjct: 247 IDNKLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWN--F 304

Query: 699 NLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFP 758
           N   +       V    N  +  L L      G VP ++    +L+VL  G +    +  
Sbjct: 305 NKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGR 364

Query: 759 CWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAM 818
            +     +  +   R +        +   D    L + D+  +          I     M
Sbjct: 365 LFGDEELTPDMSEERKHRIRMHYK-KMFLDYDQRLNLSDLLQDA---------INRNPEM 414

Query: 819 MSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIF------TSIDFSRN 872
              + +++ + KD     LT+                 +  I            I F+ +
Sbjct: 415 KPIKKDSRISLKDTQIGNLTN----------------RITFISKAIQRLTKLQIIYFANS 458

Query: 873 NFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLAN 932
            F            +       +N        +  NL+ L  ++L       Q+P  L +
Sbjct: 459 PFTYDNIAVDWEDANSDYAKQYEN-----EELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513

Query: 933 LTFLSVLNLSHNNLEGNIPVSTQLQSFSPT 962
           L  L  LN++ N       +       +  
Sbjct: 514 LPELQSLNIACNRGISAAQLKADWTRLADD 543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.7 bits (116), Expect = 1e-05
 Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 2/105 (1%)

Query: 865 TSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSD 924
           T +  +     G +P+ IG+L  L  L+F  ++               +  +   + +  
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM 385

Query: 925 QI-PIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNE 968
               + L     L++ +L  + +  N P    ++  S  S +  +
Sbjct: 386 HYKKMFLDYDQRLNLSDLLQDAINRN-PEMKPIKKDSRISLKDTQ 429

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  248 bits (636), Expect = 2e-71
 Identities = 114/569 (20%), Positives = 197/569 (34%), Gaps = 29/569 (5%)

Query: 225 GPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHT 284
           G ++P +  + +++  C+DQ  LS  VP+ +    +  +++LS + L      +      
Sbjct: 2   GSLNPCIEVVPNITYQCMDQK-LSK-VPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 285 LQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLS 344
           LQ LDLS   +       +     L  L+L+        P S   L +L  L      L+
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 345 GSIPTSLAKLTQLVYLDLSSNKF--VGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHL 402
                 + +L  L  L+++ N               NL H+DLS N +   I+  D + L
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFL 176

Query: 403 SNL----VYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLD 458
                  + +D+  N ++  I    F    L +L L  N     I +    + + L    
Sbjct: 177 RENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235

Query: 459 LSANRLEGPIPMSIFE------LKNLKILMLSSNKLNGT-VQLAAIQRLRNLIRLELSYN 511
           L     +    + IFE      L ++ I        N     +     L N+  + L+  
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295

Query: 512 NLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIG 571
           ++            + ++L +  C+LK  P L     L +L L+ N+ S           
Sbjct: 296 SIKYLEDV--PKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISFKKV----A 348

Query: 572 NGGLEYLNLSHNLLSSLQR-PYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVL--VDYSN 628
              L YL+LS N LS      YS    N +  LDL  N       +      L  +D+ +
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQH 408

Query: 629 NSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCL 688
           ++           S+   ++  +S  +              L  L ++ N       + +
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

Query: 689 IKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDL 748
              +  L  L+L    L       F     LQ L+++ N L             L  LD 
Sbjct: 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528

Query: 749 GNNKIRDTFPCWLKNISSLRVLVLRSNSF 777
             N+I  +         SL    L +NS 
Sbjct: 529 SFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  204 bits (521), Expect = 4e-56
 Identities = 97/520 (18%), Positives = 176/520 (33%), Gaps = 34/520 (6%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSG-LGNLTNLTHLNLSNAGF 139
           LDLS   I    D +     L +L +L L  N         G    LT+L +L       
Sbjct: 61  LDLSRCEIETIEDKA--WHGLHHLSNLILTGNPI--QSFSPGSFSGLTSLENLVAVETKL 116

Query: 140 AGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPG 199
           A      +  +  L  L+++ ++       + +  L     NL  L  + L    I    
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNF-------IHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169

Query: 200 IEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPE-FLADF 258
           +   Q L         L +S   +   I     +   L  + L  N  SS + +  L + 
Sbjct: 170 VNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL 228

Query: 259 FNLTSLNLSSSGLNGTFPETILQVHTLQ--------TLDLSGNSLLRGSLPDFPKNSSLR 310
             L    L            I +   ++           L+  +     +  F   +++ 
Sbjct: 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288

Query: 311 TLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGP 370
            + L+  +   +  + +        L + RC L    PT    L  L  L L+ NK    
Sbjct: 289 AMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQLK-QFPT--LDLPFLKSLTLTMNKGSIS 343

Query: 371 IPSLHMSKNLTHLDLSNNALPGAISSTDWE-HLSNLVYVDLRNNALNGSIPRSLFSIPML 429
              + +  +L++LDLS NAL  +   +  +   ++L ++DL  N     +  +   +  L
Sbjct: 344 FKKVALP-SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEEL 401

Query: 430 QQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLN 489
           Q L   ++         +  S   L  LD+S    +         L +L  L ++ N   
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 490 GTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPN--LKSQS 547
                       NL  L+LS   L   + G      +++ L ++   L  + +       
Sbjct: 462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY 521

Query: 548 KLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSS 587
            L  LD S N+I            +  L + NL++N ++ 
Sbjct: 522 SLSTLDCSFNRIETSKGILQHFPKS--LAFFNLTNNSVAC 559

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  203 bits (518), Expect = 1e-55
 Identities = 109/675 (16%), Positives = 193/675 (28%), Gaps = 133/675 (19%)

Query: 280 LQVHTLQTLDLSGNSLLRGSLPDFPKN--SSLRTLMLSYANFSGVLPDSIGNLKNLSRLD 337
           ++V    T       L +      P +  SS + + LS+     +   S  N   L  LD
Sbjct: 8   IEVVPNITYQCMDQKLSK-----VPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLD 62

Query: 338 LARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIP-SLHMSKNLTHLDLSNNALPGAISS 396
           L+RC +      +   L  L  L L+ N      P S     +L +L      L   + S
Sbjct: 63  LSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS-LES 121

Query: 397 TDWEHLSNLVYVDLRNNALNGSIPRSLFS-IPMLQQLLLANNKFGGPIPE---FSNASYS 452
                L  L  +++ +N ++     + FS +  L  + L+ N           F   +  
Sbjct: 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181

Query: 453 ALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNN 512
              +LD+S N ++  I    F+   L  L L  N  +  +    +Q L  L    L    
Sbjct: 182 VNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240

Query: 513 LTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGN 572
                + +   PS +  L                  +    L+      +       + N
Sbjct: 241 FKDERNLEIFEPSIMEGL--------------CDVTIDEFRLTYTNDFSDDIVKFHCLAN 286

Query: 573 GGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFT 632
             +  ++L+   +  L+    +        L +   QL+            +  + N  +
Sbjct: 287 --VSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS 341

Query: 633 SSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMS 692
            S               +L S                L  LDLS N LS           
Sbjct: 342 ISFK-----------KVALPS----------------LSYLDLSRNALSFSGCC------ 368

Query: 693 DILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNK 752
                            S +  G   L+ LDL+ N     +  +     +L+ LD  ++ 
Sbjct: 369 -----------------SYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHST 410

Query: 753 IRDTFPCW-LKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKC 811
           ++         ++  L  L +   +                L  + +A N+F        
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDF--DGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

Query: 812 ITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSR 871
             +                                               +  T +D S+
Sbjct: 469 FAN----------------------------------------------TTNLTFLDLSK 482

Query: 872 NNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLA 931
              +         L  L  LN S N       S    L  L +LD S N +     I   
Sbjct: 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQH 542

Query: 932 NLTFLSVLNLSHNNL 946
               L+  NL++N++
Sbjct: 543 FPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  200 bits (511), Expect = 8e-55
 Identities = 98/594 (16%), Positives = 188/594 (31%), Gaps = 85/594 (14%)

Query: 104 LQSLNLAFNMFNATEIPSG-LGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSY 162
            ++++L+FN      + S    N + L  L+LS              +  L  L L+ + 
Sbjct: 34  TKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN- 90

Query: 163 SFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCY 222
                  +++ +  G    L  L  L      ++   +E    +  L   L+ L+++  +
Sbjct: 91  ------PIQSFS-PGSFSGLTSLENLVAVETKLA--SLE-SFPIGQL-ITLKKLNVAHNF 139

Query: 223 LSG-PIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLT----SLNLSSSGLNGTFPE 277
           +    +    + L +L  + L  N + +     L           SL++S + ++    +
Sbjct: 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQD 198

Query: 278 TILQVHTLQTLDLSGNSLLRGSLPDFPKN-SSLRTLMLSYANFSG------VLPDSIGNL 330
              Q   L  L L GN      +    +N + L    L    F          P  +  L
Sbjct: 199 QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258

Query: 331 KNLSR--LDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNN 388
            +++     L   N           L  +  + L+       +  +        L +   
Sbjct: 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LEDVPKHFKWQSLSIIRC 317

Query: 389 ALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPE-FS 447
                +       L  L  + L  N   GSI     ++P L  L L+ N         +S
Sbjct: 318 Q----LKQFPTLDLPFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYS 371

Query: 448 NASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLE 507
           +   ++L  LDLS N     +  +   L+ L+ L    + L    + +A   L  L+ L+
Sbjct: 372 DLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430

Query: 508 LSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWV 567
           +SY N  ++  G                           + L  L ++ N       + V
Sbjct: 431 ISYTNTKIDFDGI----------------------FLGLTSLNTLKMAGNSFKDNTLSNV 468

Query: 568 WEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYS 627
           +      L +L+LS   L  +        L+ + +L++  N L                 
Sbjct: 469 FA-NTTNLTFLDLSKCQLEQIS-WGVFDTLHRLQLLNMSHNNL----------------- 509

Query: 628 NNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLS 681
                  +     N +        S N I           K L   +L+NN ++
Sbjct: 510 -----LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  197 bits (503), Expect = 1e-53
 Identities = 110/618 (17%), Positives = 192/618 (31%), Gaps = 88/618 (14%)

Query: 345 GSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSN 404
           GS+   +  +  +        K    +P   +  +  ++DLS N L   + S  + + S 
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLSK-VPD-DIPSSTKNIDLSFNPLKI-LKSYSFSNFSE 57

Query: 405 LVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPE-FSNASYSALDTLDLSANR 463
           L ++DL    +     ++   +  L  L+L  N      P  FS  +  +L+ L     +
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT--SLENLVAVETK 115

Query: 464 LEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSF 523
           L       I +L  LK L ++ N ++     A    L NL+ ++LSYN +      D  F
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175

Query: 524 ----PSQVRTLRLASCKLKVIP-NLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYL 578
               P    +L ++   +  I        KL  L L  N  S  I     +    GL   
Sbjct: 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ-NLAGLHVH 234

Query: 579 NLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGD 638
            L        +         +  + D+  ++                 +  +  S     
Sbjct: 235 RLILGEFKDERNLEIFEPSIMEGLCDVTIDEF--------------RLTYTNDFSDDIVK 280

Query: 639 IGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVL 698
                N +   SL+  SI  +             L +   +L       L      L  L
Sbjct: 281 FHCLANVSAM-SLAGVSIKYLEDVPKHFK--WQSLSIIRCQLKQFPTLDLPF----LKSL 333

Query: 699 NLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLAN--CRKLEVLDLGNNKIRDT 756
            L  N  S +       +  L  LDL+ N L  +   S ++     L  LDL  N     
Sbjct: 334 TLTMNKGSISFKKVALPS--LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-I 390

Query: 757 FPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWK 816
                  +  L+ L  + ++    +T      S   L  +DI+  N              
Sbjct: 391 MSANFMGLEELQHLDFQHSTL-KRVTEFSAFLSLEKLLYLDISYTNT------------- 436

Query: 817 AMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDG 876
                         D  F  LT +                         ++  + N+F  
Sbjct: 437 ----------KIDFDGIFLGLTSL------------------------NTLKMAGNSFKD 462

Query: 877 PIPEKI-GRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTF 935
                +     +L  L+ S+             L +L+ L++S N+L          L  
Sbjct: 463 NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522

Query: 936 LSVLNLSHNNLEGNIPVS 953
           LS L+ S N +E +  + 
Sbjct: 523 LSTLDCSFNRIETSKGIL 540

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  155 bits (393), Expect = 1e-39
 Identities = 86/548 (15%), Positives = 166/548 (30%), Gaps = 96/548 (17%)

Query: 456 TLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTV 515
           T      +L   +P  I    + K + LS N L   ++  +      L  L+LS   +  
Sbjct: 15  TYQCMDQKLSK-VPDDIPS--STKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIET 70

Query: 516 NASGDSSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEIPNWVWEIGNG 573
                      +  L L    ++          + L NL   + +++      + ++   
Sbjct: 71  IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT- 129

Query: 574 GLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQG-------NIPHPPRNAVLVDY 626
            L+ LN++HN + S + P   S+L  +  +DL  N +Q         +   P+  + +D 
Sbjct: 130 -LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188

Query: 627 SNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRA-KYLLVLDLSNNKLSGKMP 685
           S N     I       +      +L  N  +  I +T  +    L V  L   +   +  
Sbjct: 189 SLNPIDF-IQDQAFQGIKLHEL-TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246

Query: 686 TCLIKMSDILG-------VLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLA 738
             + + S + G          L   +      V F     +  + L    +     + + 
Sbjct: 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVP 304

Query: 739 NCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDI 798
              K + L +   +++      L     L+ L L  N      +      + P L  +D+
Sbjct: 305 KHFKWQSLSIIRCQLKQFPTLDLPF---LKSLTLTMNK----GSISFKKVALPSLSYLDL 357

Query: 799 ASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELV 858
           + N                         S      +  L                     
Sbjct: 358 SRNAL-----------------------SFSGCCSYSDLG-------------------- 374

Query: 859 KILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIP-STIGNLQQLESLDL 917
              +    +D S N     +      L+ L  L+F  +        S   +L++L  LD+
Sbjct: 375 --TNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431

Query: 918 SMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVST---------------QLQSFSPT 962
           S  +           LT L+ L ++ N+ + N   +                QL+  S  
Sbjct: 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491

Query: 963 SFEGNEGL 970
            F+    L
Sbjct: 492 VFDTLHRL 499

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 76.6 bits (189), Expect = 2e-14
 Identities = 57/320 (17%), Positives = 89/320 (27%), Gaps = 67/320 (20%)

Query: 658 GVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNC 717
           G +   I      +     + KLS K+P  +         ++L  N L    S +F    
Sbjct: 2   GSLNPCIEVVP-NITYQCMDQKLS-KVPDDI---PSSTKNIDLSFNPLKILKSYSFSNFS 56

Query: 718 GLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSF 777
            LQ LDL+  ++     K+      L  L L  N I+   P     ++SL  LV      
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-- 114

Query: 778 YGSITCREND--DSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFE 835
              +   E+        L+ +++A N           ++                     
Sbjct: 115 --KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN------------------ 154

Query: 836 LLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLK----SLYGL 891
                                          +D S N         +  L+        L
Sbjct: 155 ----------------------------LVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186

Query: 892 NFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIP-IQLANLTFLSVLNLSHNNLEGNI 950
           + S N     I        +L  L L  N  S  I    L NL  L V  L     +   
Sbjct: 187 DMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE- 244

Query: 951 PVSTQLQSFSPTSFEGNEGL 970
                L+ F P+  EG   +
Sbjct: 245 ---RNLEIFEPSIMEGLCDV 261

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  234 bits (598), Expect = 2e-66
 Identities = 119/581 (20%), Positives = 213/581 (36%), Gaps = 51/581 (8%)

Query: 64  CCTWCGVDCDEAGRVIGLDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSG- 122
             +       E  +    +     ++       P       + L  +FN+     I +  
Sbjct: 2   TSSDQKCIEKEVNKT--YNCENLGLN-----EIPGTLPNSTECLEFSFNVL--PTIQNTT 52

Query: 123 LGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSS-------SYSFGGPLKLENPNL 175
              L NLT L+L+             +  RL TL L++         +  GP  L++   
Sbjct: 53  FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112

Query: 176 S---------GLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGP 226
                       L N   L +LYL   +IS+  +            L+VL   +  +   
Sbjct: 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK----LKVLDFQNNAIHYL 168

Query: 227 IHPSLAKLQSLSVICLDQNDLS-SPVPEFLADFFNLTSLNLSSSGLNGTFPETI--LQVH 283
               ++ LQ  + + L+ N    + +     D     SLN   +       + +    + 
Sbjct: 169 SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ 228

Query: 284 TLQTLDLSGNSL--LRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARC 341
           +L            +  ++ +     S+ ++ L    F  +  ++      L  LDL   
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288

Query: 342 NLSGSIPTSLAKLTQLVYLDLSSNKFVGPIP-SLHMSKNLTHLDLSNNALPGAISSTDWE 400
           +LS  +P+ L  L+ L  L LS+NKF      S     +LTHL +  N     + +   E
Sbjct: 289 HLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347

Query: 401 HLSNLVYVDLRNNALNGS--IPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLD 458
           +L NL  +DL ++ +  S      L ++  LQ L L+ N+    +   +      L+ LD
Sbjct: 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKTEAFKECPQLELLD 406

Query: 459 LSANRLEGPIPMSIFE-LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNA 517
           L+  RL+     S F+ L  LK+L LS + L+          L  L  L L  N+     
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI-SSEQLFDGLPALQHLNLQGNHFPKGN 465

Query: 518 SGDSSF---PSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEIPNWVWEIGN 572
              ++      ++  L L+ C L  I      S   + ++DLS N+++         + +
Sbjct: 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA---LSH 522

Query: 573 GGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGN 613
               YLNL+ N +S +  P  +  L+    ++L  N L   
Sbjct: 523 LKGIYLNLASNHISIIL-PSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  232 bits (595), Expect = 5e-66
 Identities = 95/528 (17%), Positives = 178/528 (33%), Gaps = 34/528 (6%)

Query: 211 PKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSG 270
             L  L L+ C +      +      L  + L  N L       L+    L  L    +G
Sbjct: 57  INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG 116

Query: 271 LNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNL 330
           ++      +    TL++L L  N +    LP       L+ L         +  + + +L
Sbjct: 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176

Query: 331 KNLSRLDLA-RCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMS---KNLTHLDLS 386
           +  + L L    N    I            L+    + +  I     +   ++L      
Sbjct: 177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236

Query: 387 NNALPGAISST-DWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPE 445
           +        +  +     ++  ++L+ +        +      LQ+L L           
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG 296

Query: 446 FSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIR 505
                 S L  L LSAN+ E    +S     +L  L +  N     +    ++ L NL  
Sbjct: 297 LVGL--STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354

Query: 506 LELSYNNLTVNASGDSSFP--SQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISG 561
           L+LS++++  +   +      S +++L L+  +   +     K   +L  LDL+  ++  
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414

Query: 562 EIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNA 621
           +     ++     L+ LNLSH+LL           L  +  L+L  N             
Sbjct: 415 KDAQSPFQ-NLHLLKVLNLSHSLLDISS-EQLFDGLPALQHLNLQGNHFPKGNIQKT--- 469

Query: 622 VLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLS 681
                  NS           ++       LS   ++ +        K +  +DLS+N+L+
Sbjct: 470 -------NSLQ---------TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513

Query: 682 GKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQL 729
                 L  +  I   LNL  N +S  L    P     +T++L +N L
Sbjct: 514 SSSIEALSHLKGI--YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  226 bits (577), Expect = 2e-63
 Identities = 104/581 (17%), Positives = 196/581 (33%), Gaps = 53/581 (9%)

Query: 214 RVLSLSSCYLS---GPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSG 270
           +  +  +  L+   G +  S   L+         N L +      +   NLT L+L+   
Sbjct: 15  KTYNCENLGLNEIPGTLPNSTECLE------FSFNVLPTIQNTTFSRLINLTFLDLTRCQ 68

Query: 271 LNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNL 330
           +     +T    H L TL L+ N L                          +   ++   
Sbjct: 69  IYWIHEDTFQSQHRLDTLVLTANPL------------------------IFMAETALSGP 104

Query: 331 KNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVG-PIPSLHMSKNLTHLDLSNNA 389
           K L  L   +  +S      L     L  L L SN      +P    ++ L  LD  NNA
Sbjct: 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164

Query: 390 LPGAISSTDWEHLSNL--VYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKF-GGPIPEF 446
           +   +S  D   L     + ++L  N +   I    F   + Q L     +         
Sbjct: 165 IHY-LSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGL 222

Query: 447 SNASYSALDTLDLSANRLEGPIPMSIFELK--NLKILMLSSNKLNGTVQLAAIQRLRNLI 504
            N++  +L          E   P     L   +++ + L  +     +          L 
Sbjct: 223 KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQ 281

Query: 505 RLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGE 562
            L+L+  +L+   SG     + ++ L L++ K + +      +   L +L +  N    E
Sbjct: 282 ELDLTATHLSELPSGLVGLST-LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

Query: 563 IPNWVWEIGNGGLEYLNLSHNLLSSLQ-RPYSISDLNLMTVLDLHSNQLQGNIPHPPRNA 621
           +     E     L  L+LSH+ + +       + +L+ +  L+L  N+         +  
Sbjct: 341 LGTGCLE-NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399

Query: 622 ---VLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNN 678
               L+D +              +++     +LS + +     +       L  L+L  N
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459

Query: 679 KLSGKMPTCL--IKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKS 736
                       ++    L +L L    LS      F     +  +DL+ N+L  +  ++
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519

Query: 737 LANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSF 777
           L++ + +  L+L +N I    P  L  +S  R + LR N  
Sbjct: 520 LSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  213 bits (544), Expect = 4e-59
 Identities = 109/677 (16%), Positives = 211/677 (31%), Gaps = 132/677 (19%)

Query: 281 QVHTLQTLDLSGNSLLR--GSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDL 338
           +    +T +     L    G+LP     +S   L  S+     +   +   L NL+ LDL
Sbjct: 10  EKEVNKTYNCENLGLNEIPGTLP-----NSTECLEFSFNVLPTIQNTTFSRLINLTFLDL 64

Query: 339 ARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIP-SLHMSKNLTHLDLSNNALPGAISST 397
            RC +      +     +L  L L++N  +     +L   K L HL      +   I   
Sbjct: 65  TRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFI 123

Query: 398 DWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPE-FSNASYSALDT 456
              +   L  + L +N ++       F    L+ L   NN       E  S+   +   +
Sbjct: 124 PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183

Query: 457 LDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTV-QLAAIQRLRNLIRLELSYNNLTV 515
           L+L+ N + G I    F+    + L     +    + +      +++L        +   
Sbjct: 184 LNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 516 NASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGL 575
            +                      +     +  + +++L  +       N         L
Sbjct: 243 ISPA--------------------VFEGLCEMSVESINLQKHYFFNISSNTFHCFSG--L 280

Query: 576 EYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSI 635
           + L+L+   LS L  P  +  L+ +  L L                              
Sbjct: 281 QELDLTATHLSEL--PSGLVGLSTLKKLVL------------------------------ 308

Query: 636 PGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDIL 695
                           S+N    +   +      L  L +  N    ++ T  ++  + L
Sbjct: 309 ----------------SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352

Query: 696 GVLNLRGNSL--SGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKI 753
             L+L  + +  S   ++       LQ+L+L+ N+      ++   C +LE+LDL   ++
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412

Query: 754 RDTFPC-WLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCI 812
           +        +N+  L+VL L  +    S    +  D  P LQ +++  N+F         
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISS--EQLFDGLPALQHLNLQGNHF--------- 461

Query: 813 TSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRN 872
                                   L                       L     +  S  
Sbjct: 462 --------------PKGNIQKTNSLQT---------------------LGRLEILVLSFC 486

Query: 873 NFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLAN 932
           +           LK +  ++ S N         + +L+ +  L+L+ NH+S  +P  L  
Sbjct: 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPI 545

Query: 933 LTFLSVLNLSHNNLEGN 949
           L+    +NL  N L+  
Sbjct: 546 LSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  193 bits (492), Expect = 3e-52
 Identities = 103/558 (18%), Positives = 180/558 (32%), Gaps = 71/558 (12%)

Query: 408 VDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGP 467
            +  N  LN  IP +L      + L  + N     I   + +    L  LDL+  ++   
Sbjct: 17  YNCENLGLN-EIPGTLP--NSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 468 IPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQV 527
              +      L  L+L++N L   +   A+   + L  L      ++            +
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 528 RTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLL 585
            +L L S  +  I         KL  LD  +N I       +  +       LNL+ N +
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191

Query: 586 SSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLV-----DYSNNSFTSSIPGDIG 640
           + +       D  +   L+    Q    I    +N+ +       + +       P    
Sbjct: 192 AGI--EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 641 NSMNFTI-FFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLN 699
                ++   +L  +    +   T      L  LDL+   LS ++P+ L+ +S  L  L 
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLST-LKKLV 307

Query: 700 LRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTV-PKSLANCRKLEVLDLGNNKIR--DT 756
           L  N       ++      L  L +  N     +    L N   L  LDL ++ I   D 
Sbjct: 308 LSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367

Query: 757 FPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWK 816
               L+N+S L+ L L  N         E     P L+++D+A      +  Q    +  
Sbjct: 368 CNLQLRNLSHLQSLNLSYNEPLSLK--TEAFKECPQLELLDLAFTRLKVKDAQSPFQN-- 423

Query: 817 AMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDG 876
                                                       L +   ++ S +  D 
Sbjct: 424 --------------------------------------------LHLLKVLNLSHSLLDI 439

Query: 877 PIPEKIGRLKSLYGLNFSQNAFGGPI---PSTIGNLQQLESLDLSMNHLSDQIPIQLANL 933
              +    L +L  LN   N F        +++  L +LE L LS   LS        +L
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499

Query: 934 TFLSVLNLSHNNLEGNIP 951
             ++ ++LSHN L  +  
Sbjct: 500 KMMNHVDLSHNRLTSSSI 517

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.5 bits (181), Expect = 2e-13
 Identities = 46/286 (16%), Positives = 78/286 (27%), Gaps = 62/286 (21%)

Query: 672 VLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGG 731
             +  N  L+ ++P  L    +    L    N L    + TF     L  LDL   Q+  
Sbjct: 16  TYNCENLGLN-EIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 732 TVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCREND--DS 789
               +  +  +L+ L L  N +       L    +L+ L          I+  +     +
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG----ISSIDFIPLHN 127

Query: 790 WPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVT 849
              L+ + + SN+                        S+ K         +         
Sbjct: 128 QKTLESLYLGSNHI-----------------------SSIKLPKGFPTEKL--------- 155

Query: 850 WKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSL--YGLNFSQNAFGGPIPSTIG 907
                            +DF  N       E +  L+      LN + N   G I     
Sbjct: 156 ---------------KVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAF 199

Query: 908 NLQQLESLDLSMNHLSDQIPIQLANLTF--LSVLNLSHNNLEGNIP 951
           +    +SL+         I   L N T   L +      + E   P
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 5e-08
 Identities = 24/128 (18%), Positives = 39/128 (30%), Gaps = 18/128 (14%)

Query: 861 LSIFTSIDFSRNNFDGPIPEK-IGRLKSLYGLNFSQNAFG--GPIPSTIGNLQQLESLDL 917
               T +    N     +    +  L++L  L+ S +           + NL  L+SL+L
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383

Query: 918 SMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVST---------------QLQSFSPT 962
           S N               L +L+L+   L+     S                 L   S  
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443

Query: 963 SFEGNEGL 970
            F+G   L
Sbjct: 444 LFDGLPAL 451

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 8e-07
 Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 2/114 (1%)

Query: 865 TSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSD 924
             + F +          +   K+L  L    N             ++L+ LD   N +  
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167

Query: 925 QIPIQLANLTFLSV--LNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAPLN 976
                +++L   +   LNL+ N++ G  P +     F   +F G + L      
Sbjct: 168 LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKG 221

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.6 bits (119), Expect = 5e-06
 Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 13/105 (12%)

Query: 866 SIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQ 925
           + +      +  IP  +    S   L FS N       +T   L  L  LDL+   +   
Sbjct: 16  TYNCENLGLNE-IPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 926 IPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGL 970
                 +   L  L L+ N           L   + T+  G + L
Sbjct: 73  HEDTFQSQHRLDTLVLTAN----------PLIFMAETALSGPKAL 107

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  200 bits (512), Expect = 9e-58
 Identities = 76/258 (29%), Positives = 118/258 (45%), Gaps = 11/258 (4%)

Query: 260 NLTSLNLSSSGLNGTF--PETILQVHTLQTLDLSGNSLLRGSLPD-FPKNSSLRTLMLSY 316
            + +L+LS   L   +  P ++  +  L  L + G + L G +P    K + L  L +++
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 317 ANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPS--L 374
            N SG +PD +  +K L  LD +   LSG++P S++ L  LV +    N+  G IP    
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 375 HMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLL 434
             SK  T + +S N L G I  T   +L NL +VDL  N L G       S    Q++ L
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFA-NL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 435 ANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQL 494
           A N     + +   +    L+ LDL  NR+ G +P  + +LK L  L +S N L G +  
Sbjct: 229 AKNSLAFDLGKVGLS--KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-- 284

Query: 495 AAIQRLRNLIRLELSYNN 512
                L+       + N 
Sbjct: 285 PQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  165 bits (420), Expect = 2e-45
 Identities = 80/394 (20%), Positives = 128/394 (32%), Gaps = 127/394 (32%)

Query: 314 LSYANFSGVLPDSIGNLKNLSRLDLARCNLSGS--IPTSLAKLTQLVYLDLSS-NKFVGP 370
                + GVL D+      ++ LDL+  NL     IP+SLA L  L +L +   N  VGP
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP 92

Query: 371 IPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQ 430
           IP            ++               L+ L Y+ + +  ++G+IP  L  I  L 
Sbjct: 93  IPP----------AIAK--------------LTQLHYLYITHTNVSGAIPDFLSQIKTLV 128

Query: 431 QLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNG 490
                                    TLD S N L G +P SI  L NL  +    N+++G
Sbjct: 129 -------------------------TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 491 TVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLF 550
            +                               P                 +        
Sbjct: 164 AI-------------------------------PDS-------------YGSFSKLFTS- 178

Query: 551 NLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQL 610
            + +S N+++G+IP       N  L +++LS N+L                 + L  N L
Sbjct: 179 -MTISRNRLTGKIPP---TFANLNLAFVDLSRNMLEG-DASVLFGSDKNTQKIHLAKNSL 233

Query: 611 QGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYL 670
             ++                        +G S N      L +N I G +P+ + + K+L
Sbjct: 234 AFDLG----------------------KVGLSKNLN-GLDLRNNRIYGTLPQGLTQLKFL 270

Query: 671 LVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNS 704
             L++S N L G++P           V     N 
Sbjct: 271 HSLNVSFNNLCGEIPQGGNLQR--FDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  161 bits (410), Expect = 5e-44
 Identities = 85/388 (21%), Positives = 127/388 (32%), Gaps = 118/388 (30%)

Query: 30  CQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSTDCC--TWCGVDCDEAG---RVIGLDLS 84
           C    +  LLQ+K  L   ++LS     W  +TDCC  TW GV CD      RV  LDLS
Sbjct: 3   CNPQDKQALLQIKKDLGNPTTLS----SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLS 58

Query: 85  EESISGRIDNSSPLLSLKYLQSLNLA-FNMFNAT-----------------------EIP 120
             ++       S L +L YL  L +   N                             IP
Sbjct: 59  GLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP 118

Query: 121 SGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQ 180
             L  +  L  L+ S    +G +P  +S++  LV +               N  +SG + 
Sbjct: 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG-----------N-RISGAI- 165

Query: 181 NLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVI 240
                            P      +  S       +++S   L+G I P+ A L      
Sbjct: 166 -----------------P-----DSYGSFSKLFTSMTISRNRLTGKIPPTFANL------ 197

Query: 241 CLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSL 300
                              NL  ++LS + L G            Q + L+ N       
Sbjct: 198 -------------------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN------- 231

Query: 301 PDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYL 360
                            + +  L   +G  KNL+ LDL    + G++P  L +L  L  L
Sbjct: 232 -----------------SLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273

Query: 361 DLSSNKFVGPIPSLHMSKNLTHLDLSNN 388
           ++S N   G IP     +       +NN
Sbjct: 274 NVSFNNLCGEIPQGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  152 bits (386), Expect = 6e-41
 Identities = 76/325 (23%), Positives = 122/325 (37%), Gaps = 54/325 (16%)

Query: 455 DTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQL-AAIQRLRNLIRLELSYNNL 513
            T D       G +  +  +   +  L LS   L     + +++  L  L  L +   N 
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN- 87

Query: 514 TVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNG 573
             N  G    P  +  L                ++L  L ++   +SG IP+++ +I   
Sbjct: 88  --NLVG--PIPPAIAKL----------------TQLHYLYITHTNVSGAIPDFLSQIKT- 126

Query: 574 GLEYLNLSHNLLS-SLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFT 632
            L  L+ S+N LS +L  P SIS L  +  +    N++ G                    
Sbjct: 127 -LVTLDFSYNALSGTL--PPSISSLPNLVGITFDGNRISG-------------------- 163

Query: 633 SSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMS 692
            +IP   G+        ++S N +TG IP T      L  +DLS N L G          
Sbjct: 164 -AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK 221

Query: 693 DILGVLNLRGNSLSGTL-SVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNN 751
           +    ++L  NSL+  L  V    N  L  LDL  N++ GT+P+ L   + L  L++  N
Sbjct: 222 N-TQKIHLAKNSLAFDLGKVGLSKN--LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

Query: 752 KIRDTFPCWLKNISSLRVLVLRSNS 776
            +    P    N+    V    +N 
Sbjct: 279 NLCGEIPQ-GGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  148 bits (375), Expect = 2e-39
 Identities = 56/271 (20%), Positives = 106/271 (39%), Gaps = 26/271 (9%)

Query: 551 NLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLS-SLQRPYSISDLNLMTVLDLHS-N 608
             D  +    G + +   +     +  L+LS   L      P S+++L  +  L +   N
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYR--VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN 87

Query: 609 QLQGNIPHP---PRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETIC 665
            L G IP           +  ++ + + +IP  +            S N+++G +P +I 
Sbjct: 88  NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV-TLDFSYNALSGTLPPSIS 146

Query: 666 RAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLN 725
               L+ +    N++SG +P      S +   + +  N L+G +  TF  N  L  +DL+
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF-ANLNLAFVDLS 205

Query: 726 ENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRE 785
            N L G       + +  + + L  N +       +    +L  L LR+N  YG++    
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTL---- 260

Query: 786 NDDSWP-------MLQIVDIASNNFGGRVPQ 809
                P        L  ++++ NN  G +PQ
Sbjct: 261 -----PQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  143 bits (363), Expect = 8e-38
 Identities = 74/405 (18%), Positives = 126/405 (31%), Gaps = 120/405 (29%)

Query: 586 SSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLV---DYSNNSF--TSSIPGDIG 640
             L  P ++S        D  +    G +         V   D S  +      IP  + 
Sbjct: 16  KDLGNPTTLSSWL--PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA 73

Query: 641 NSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNL 700
           N       +    N++ G IP  I +   L  L +++  +SG +P  L ++   L  L+ 
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT-LVTLDF 132

Query: 701 RGNSLSGTLSVTFPGNC-GLQTLDLNENQLGGTVPKSLANCRKL-EVLDLGNNKIRDTFP 758
             N+LSGTL  +   +   L  +  + N++ G +P S  +  KL   + +  N++    P
Sbjct: 133 SYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

Query: 759 CWLKNISSLRVLVLRSNSFYGSI-----TCRENDDSWPMLQIVDIASNNFGGRVPQKCIT 813
               N+ +L  + L  N   G       + +         Q + +A N+    + +    
Sbjct: 192 PTFANL-NLAFVDLSRNMLEGDASVLFGSDK-------NTQKIHLAKNSLAFDLGK---- 239

Query: 814 SWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNN 873
                                                       V +      +D   N 
Sbjct: 240 --------------------------------------------VGLSKNLNGLDLRNNR 255

Query: 874 FDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANL 933
             G +P+ +                                                  L
Sbjct: 256 IYGTLPQGLT------------------------------------------------QL 267

Query: 934 TFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAPLNVC 978
            FL  LN+S NNL G IP    LQ F  +++  N+ LCG+PL  C
Sbjct: 268 KFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 312

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  199 bits (507), Expect = 6e-53
 Identities = 109/564 (19%), Positives = 209/564 (37%), Gaps = 60/564 (10%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSG-LGNLTNLTHLNLSNAGF 139
           L+L  +     ID  +   +L  L+ L+L  +      +       L +L  L L   G 
Sbjct: 53  LELGSQYTPLTIDKEA-FRNLPNLRILDLGSSKI--YFLHPDAFQGLFHLFELRLYFCGL 109

Query: 140 AGQI--PIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISA 197
           +  +        +  L  LDLS +        + +  L      L  L+++      I  
Sbjct: 110 SDAVLKDGYFRNLKALTRLDLSKNQ-------IRSLYLHPSFGKLNSLKSIDFSSNQIFL 162

Query: 198 PGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAK-LQSLSVICLDQNDLSSPVPEFLA 256
                 + L      L   SL++  L   +     K +     + L+  D+S        
Sbjct: 163 VCEHELEPLQG--KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG------- 213

Query: 257 DFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFP--KNSSLRTLML 314
           + + +      S+ ++ +   +++  H +       +++       F     SS+R L L
Sbjct: 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL 273

Query: 315 SYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVG-PIPS 373
           S+     +       LK+L  L+LA   ++     +   L  L  L+LS N        +
Sbjct: 274 SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333

Query: 374 LHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLL 433
            +    + ++DL  N +   I    ++ L  L  +DLR+NAL      ++  IP +  + 
Sbjct: 334 FYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIF 387

Query: 434 LANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFE-LKNLKILMLSSNKLNGTV 492
           L+ NK    +P+ +       + + LS NRLE    +     + +L+IL+L+ N+ +   
Sbjct: 388 LSGNKLVT-LPKIN----LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS 442

Query: 493 QLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNL 552
                    +L +L L  N L +  + ++     V                +  S L  L
Sbjct: 443 GDQTPSENPSLEQLFLGENMLQL--AWETELCWDV---------------FEGLSHLQVL 485

Query: 553 DLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQG 612
            L+ N ++  +P  V+      L  L+L+ N L+ L           + +LD+  NQL  
Sbjct: 486 YLNHNYLN-SLPPGVFS-HLTALRGLSLNSNRLTVLS---HNDLPANLEILDISRNQLLA 540

Query: 613 NIPHPPRNAVLVDYSNNSFTSSIP 636
             P    +  ++D ++N F     
Sbjct: 541 PNPDVFVSLSVLDITHNKFICECE 564

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  198 bits (506), Expect = 8e-53
 Identities = 115/554 (20%), Positives = 191/554 (34%), Gaps = 51/554 (9%)

Query: 283 HTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVL-PDSIGNLKNLSRLDLARC 341
           +T + L LS N +   +   FP    L+ L L        +  ++  NL NL  LDL   
Sbjct: 24  NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83

Query: 342 NLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPS---LHMSKNLTHLDLSNNALPGAISSTD 398
            +    P +   L  L  L L        +         K LT LDLS N +        
Sbjct: 84  KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS 143

Query: 399 WEHLSNLVYVDLRNNALNGSIPRSLFSIPM--LQQLLLANNKFGGPIPEFSNASYSA--- 453
           +  L++L  +D  +N +       L  +    L    LA N     +        +    
Sbjct: 144 FGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203

Query: 454 --LDTLDLSANRLEGPIP------------MSIFELKNLKILMLSSNKLNGTVQLAAIQR 499
             L+ LD+S N     I              S+    ++       + +           
Sbjct: 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAG 262

Query: 500 LR--NLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLS 555
           L   ++  L+LS+  +    S        ++ L LA  K+  I +        L  L+LS
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322

Query: 556 DNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIP 615
            N +  E+ +  +  G   + Y++L  N ++ +Q   +   L  +  LDL  N L   I 
Sbjct: 323 YNLLG-ELYSSNFY-GLPKVAYIDLQKNHIAIIQ-DQTFKFLEKLQTLDLRDNALT-TIH 378

Query: 616 HPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGV-IPETICRAKYLLVLD 674
             P    +   S N   +    ++  +        LS N +  + I   + R  +L +L 
Sbjct: 379 FIPSIPDI-FLSGNKLVTLPKINLTAN-----LIHLSENRLENLDILYFLLRVPHLQILI 432

Query: 675 LSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNC-----GLQTLDLNENQL 729
           L+ N+ S          +  L  L L  N L          +       LQ L LN N L
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492

Query: 730 GGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDS 789
               P   ++   L  L L +N++       L   ++L +L +  N          N D 
Sbjct: 493 NSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAP-----NPDV 545

Query: 790 WPMLQIVDIASNNF 803
           +  L ++DI  N F
Sbjct: 546 FVSLSVLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  179 bits (455), Expect = 2e-46
 Identities = 112/553 (20%), Positives = 194/553 (35%), Gaps = 59/553 (10%)

Query: 408 VDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGP 467
              R   L   +P+ L      ++LLL+ N     +   S      L  L+L +      
Sbjct: 9   AFYRFCNLT-QVPQVL---NTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYTPLT 63

Query: 468 IPMSIFE-LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFP-- 524
           I    F  L NL+IL L S+K+   +   A Q L +L  L L +  L+     D  F   
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122

Query: 525 SQVRTLRLASCKLKVIPNLKSQSKLFNL---DLSDNQISGEIPNWVWEIGNGGLEYLNLS 581
             +  L L+  +++ +    S  KL +L   D S NQI     + +  +    L + +L+
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182

Query: 582 HNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGN 641
            N L S         +N    + L    + GN         +    +N+ + S    +  
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN----GWTVDITGNFSNAISKSQAFSLIL 238

Query: 642 SMNFTIFFSLSSNSITGVIPETI--CRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLN 699
           + +         ++I      T        +  LDLS+  +          + D L VLN
Sbjct: 239 AHHIMGAG-FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD-LKVLN 296

Query: 700 LRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPC 759
           L  N ++      F G   LQ L+L+ N LG     +     K+  +DL  N I      
Sbjct: 297 LAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356

Query: 760 WLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMM 819
             K +  L+ L LR N+              P +  + ++ N          +       
Sbjct: 357 TFKFLEKLQTLDLRDNAL-------TTIHFIPSIPDIFLSGNKL------VTLPK----- 398

Query: 820 SDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDG-PI 878
                  +N   +    L ++       + +    +  ++IL        ++N F     
Sbjct: 399 ---INLTANLIHLSENRLENL------DILYFLLRVPHLQIL------ILNQNRFSSCSG 443

Query: 879 PEKIGRLKSLYGLNFSQNAFGGPIPSTI-----GNLQQLESLDLSMNHLSDQIPIQLANL 933
            +      SL  L   +N       + +       L  L+ L L+ N+L+   P   ++L
Sbjct: 444 DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL 503

Query: 934 TFLSVLNLSHNNL 946
           T L  L+L+ N L
Sbjct: 504 TALRGLSLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  177 bits (450), Expect = 9e-46
 Identities = 128/746 (17%), Positives = 241/746 (32%), Gaps = 126/746 (16%)

Query: 283  HTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCN 342
               +       +L    +P     ++   L+LS+     V   S   L+ L  L+L    
Sbjct: 4    FDGRIAFYRFCNL--TQVPQVL--NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY 59

Query: 343  LSGSI-PTSLAKLTQLVYLDLSSNKFVG-PIPSLHMSKNLTHLDLSNNAL-PGAISSTDW 399
               +I   +   L  L  LDL S+K       +     +L  L L    L    +    +
Sbjct: 60   TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119

Query: 400  EHLSNLVYVDLRNNALNGSIPRSLFS-IPMLQQLLLANNKFGGPIPE-FSNASYSALDTL 457
             +L  L  +DL  N +        F  +  L+ +  ++N+                L   
Sbjct: 120  RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179

Query: 458  DLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNA 517
             L+AN L   + +   +  N                     R   L  L++S N  TV+ 
Sbjct: 180  SLAANSLYSRVSVDWGKCMNP-------------------FRNMVLEILDVSGNGWTVDI 220

Query: 518  SGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEY 577
            +G  +F + +   +          +L     +       + I     N    +    + +
Sbjct: 221  TG--NFSNAISKSQ--------AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH 270

Query: 578  LNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPG 637
            L+LSH  + SL        L  + VL+L  N++                      + I  
Sbjct: 271  LDLSHGFVFSLN-SRVFETLKDLKVLNLAYNKI----------------------NKIAD 307

Query: 638  DIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGV 697
            +    ++     +LS N +  +          +  +DL  N ++         +  +   
Sbjct: 308  EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ-T 366

Query: 698  LNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTF 757
            L+LR N+L+     T      +  + L+ N+L      +L       ++ L  N++ +  
Sbjct: 367  LDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLENLD 417

Query: 758  PCW-LKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWK 816
              + L  +  L++L+L  N F  S +  +     P L+ + +  N               
Sbjct: 418  ILYFLLRVPHLQILILNQNRF-SSCSGDQTPSENPSLEQLFLGENMLQLAWET------- 469

Query: 817  AMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDG 876
                              EL  D+F                   LS    +  + N  + 
Sbjct: 470  ------------------ELCWDVFEG-----------------LSHLQVLYLNHNYLNS 494

Query: 877  PIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFL 936
              P     L +L GL+ + N       + +     LE LD+S N L             L
Sbjct: 495  LPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLA---PNPDVFVSL 549

Query: 937  SVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAPLNVCP--PNSSKALPSAPASTD 994
            SVL+++HN          +L +F       N  + G P ++    P+S   +     ST+
Sbjct: 550  SVLDITHNKFICEC----ELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTE 605

Query: 995  EIDWFFIVMAIGFAVGFGSVVAPLMF 1020
              D   ++ ++ F++     V   +F
Sbjct: 606  GCDEEEVLKSLKFSLFIVCTVTLTLF 631

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  119 bits (299), Expect = 2e-27
 Identities = 76/356 (21%), Positives = 125/356 (35%), Gaps = 36/356 (10%)

Query: 77  RVIGLDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSG-LGNLTNLTHLNLS 135
            ++G      +I     N+   L+   ++ L+L+        + S     L +L  LNL+
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV--FSLNSRVFETLKDLKVLNLA 298

Query: 136 NAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNI 195
                         +  L  L+LS          L     S     L ++  + L   +I
Sbjct: 299 YNKINKIADEAFYGLDNLQVLNLSY-------NLLGELY-SSNFYGLPKVAYIDLQKNHI 350

Query: 196 SAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFL 255
           +       Q    L  KL+ L L    L+     ++  + S+  I L  N L +      
Sbjct: 351 AIIQ---DQTFKFL-EKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVT----LP 397

Query: 256 ADFFNLTSLNLSSSGLNGTFPETILQ-VHTLQTLDLSGNSLLRGSLPD-FPKNSSLRTL- 312
                   ++LS + L        L  V  LQ L L+ N     S      +N SL  L 
Sbjct: 398 KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF 457

Query: 313 ----MLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFV 368
               ML  A  + +  D    L +L  L L    L+   P   + LT L  L L+SN+  
Sbjct: 458 LGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517

Query: 369 GPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLF 424
             +    +  NL  LD+S N     + + + +   +L  +D+ +N        S F
Sbjct: 518 V-LSHNDLPANLEILDISRN----QLLAPNPDVFVSLSVLDITHNKFICECELSTF 568

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  185 bits (471), Expect = 8e-50
 Identities = 114/555 (20%), Positives = 196/555 (35%), Gaps = 72/555 (12%)

Query: 242 LDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLP 301
           L  N L          F  L  L+LS   +          +  L TL L+GN +   +L 
Sbjct: 35  LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94

Query: 302 DFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNL-SGSIPTSLAKLTQLVYL 360
            F   SSL+ L+    N + +    IG+LK L  L++A   + S  +P   + LT L +L
Sbjct: 95  AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154

Query: 361 DLSSNKFVGPIPSL-----HMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNAL 415
           DLSSNK      +       M      LDLS N +              L  + LRNN  
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFD 212

Query: 416 NGSIPRSLFS-IPMLQQLLLANNKFGG-------PIPEFSNASYSALDTLDLSANRLEGP 467
           + ++ ++    +  L+   L   +F                     ++   L+       
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 468 IPMSIFE-LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQ 526
             + +F  L N+    L S  +      +     ++L  +   +          +     
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP------TLKLKS 326

Query: 527 VRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLS 586
           ++ L   S K     +      L  LDLS N +S +      + G   L+YL+LS N + 
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 587 SLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFT 646
           ++    +   L  +  LD   + L+                       +         F+
Sbjct: 387 TM--SSNFLGLEQLEHLDFQHSNLK----------------------QMS-------EFS 415

Query: 647 IFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLS 706
           +F SL +                L+ LD+S+             +S  L VL + GNS  
Sbjct: 416 VFLSLRN----------------LIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQ 458

Query: 707 GTL-SVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNIS 765
                  F     L  LDL++ QL    P +  +   L+VL++ +N+++         ++
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518

Query: 766 SLRVLVLRSNSFYGS 780
           SL+ + L +N +  S
Sbjct: 519 SLQKIWLHTNPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  175 bits (445), Expect = 2e-46
 Identities = 94/493 (19%), Positives = 169/493 (34%), Gaps = 35/493 (7%)

Query: 211 PKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSG 270
           P+L+VL LS C +      +   L  LS + L  N + S      +   +L  L    + 
Sbjct: 52  PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111

Query: 271 LNGTFPETILQVHTLQTLDLSGNSLLRGSLPD-FPKNSSLRTLMLSYANFSGVLPDSIGN 329
           L       I  + TL+ L+++ N +    LP+ F   ++L  L LS      +    +  
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 330 LKNLS----RLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSK--NLTHL 383
           L  +      LDL+   ++  I     K  +L  L L +N     +    +     L   
Sbjct: 172 LHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230

Query: 384 DLSNNALPGA--ISSTDWEHLSNLVYVDLRNNALNG------SIPRSLFSIPMLQQLLLA 435
            L          +   D   L  L  + +    L         I      +  +    L 
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290

Query: 436 NNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLA 495
           +           N  +  L+ ++    +          +LK+LK L  +SNK        
Sbjct: 291 SVTIERVKDFSYNFGWQHLELVNCKFGQF------PTLKLKSLKRLTFTSNKGGN---AF 341

Query: 496 AIQRLRNLIRLELSYNNLTVNASGDSSF--PSQVRTLRLASCKLKVIP-NLKSQSKLFNL 552
           +   L +L  L+LS N L+       S    + ++ L L+   +  +  N     +L +L
Sbjct: 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 401

Query: 553 DLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQG 612
           D   + +  ++  +   +    L YL++SH            + L+ + VL +  N  Q 
Sbjct: 402 DFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQE 459

Query: 613 NIP----HPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAK 668
           N         RN   +D S       +     NS++     +++SN +  V      R  
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518

Query: 669 YLLVLDLSNNKLS 681
            L  + L  N   
Sbjct: 519 SLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  172 bits (439), Expect = 1e-45
 Identities = 104/533 (19%), Positives = 189/533 (35%), Gaps = 46/533 (8%)

Query: 104 LQSLNLAFNMFNATEIPSG-LGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSY 162
            ++L+L+FN      + S    +   L  L+LS             +++ L TL L+ + 
Sbjct: 30  TKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN- 86

Query: 163 SFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCY 222
               P++       G    L+ L+ L     N++         +  L   L+ L+++   
Sbjct: 87  ----PIQSLAL---GAFSGLSSLQKLVAVETNLA---SLENFPIGHL-KTLKELNVAHNL 135

Query: 223 L-SGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLT----SLNLSSSGLNGTFPE 277
           + S  +    + L +L  + L  N + S     L     +     SL+LS + +N     
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQP 194

Query: 278 TILQVHTLQTLDLSGNSLLRGSLPDFPKN-SSLRTLMLSYA------NFSGVLPDSIGNL 330
              +   L  L L  N      +    +  + L    L         N       ++  L
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 331 KNLS--RLDLARCNLSGS-IPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSN 387
            NL+     LA  +     I      LT +    L S      +     +    HL+L N
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVN 313

Query: 388 NALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGG-PIPEF 446
                         L +L  +   +N    +   S   +P L+ L L+ N          
Sbjct: 314 C----KFGQFPTLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 447 SNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRL 506
           S+   ++L  LDLS N +   +  +   L+ L+ L    + L    + +    LRNLI L
Sbjct: 368 SDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

Query: 507 ELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIP---NLKSQSKLFNLDLSDNQISGEI 563
           ++S+ +  V  +G  +  S +  L++A    +             L  LDLS  Q+  ++
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QL 485

Query: 564 PNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPH 616
               +      L+ LN++ N L S+        L  +  + LH+N    + P 
Sbjct: 486 SPTAFN-SLSSLQVLNMASNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  161 bits (410), Expect = 6e-42
 Identities = 101/527 (19%), Positives = 178/527 (33%), Gaps = 65/527 (12%)

Query: 287 TLDLSGNSLLRGSLPDFPKN--SSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLS 344
           T      +  +      P N   S + L LS+     +   S  +   L  LDL+RC + 
Sbjct: 11  TYQCMELNFYK-----IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 345 GSIPTSLAKLTQLVYLDLSSNKFVG-PIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLS 403
                +   L+ L  L L+ N      + +     +L  L      L  ++ +    HL 
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLK 124

Query: 404 NLVYVDLRNNALN-GSIPRSLFSIPMLQQLLLANNKFGGPIPE---FSNASYSALDTLDL 459
            L  +++ +N +    +P    ++  L+ L L++NK            +       +LDL
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 460 SANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASG 519
           S N +   I    F+   L  L L +N  +  V    IQ L  L    L           
Sbjct: 185 SLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG-------- 235

Query: 520 DSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISG-EIPNWVWEIGNGGLEYL 578
              F ++    +     L+ + NL     +    L+       +I +    + N  +   
Sbjct: 236 --EFRNEGNLEKFDKSALEGLCNLT----IEEFRLAYLDYYLDDIIDLFNCLTN--VSSF 287

Query: 579 NLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGD 638
           +L    +  ++     S       L+L + +         ++   + +++N   ++    
Sbjct: 288 SLVSVTIERVK---DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-- 342

Query: 639 IGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGK-MPTCLIKMSDILGV 697
                       L S                L  LDLS N LS K   +     +  L  
Sbjct: 343 ---------EVDLPS----------------LEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 698 LNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKS-LANCRKLEVLDLGNNKIRDT 756
           L+L  N +  T+S  F G   L+ LD   + L      S   + R L  LD+ +   R  
Sbjct: 378 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 757 FPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNF 803
           F      +SSL VL +  NSF  +    +       L  +D++    
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQCQL 482

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  161 bits (410), Expect = 6e-42
 Identities = 98/503 (19%), Positives = 167/503 (33%), Gaps = 35/503 (6%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSG-LGNLTNLTHLNLSNAGF 139
           LDLS   I   I++ +   SL +L +L L  N      +  G    L++L  L       
Sbjct: 57  LDLSRCEIQ-TIEDGA-YQSLSHLSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNL 112

Query: 140 AGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPG 199
           A      +  +  L  L+++ +        +++  L     NL  L  L L    I +  
Sbjct: 113 ASLENFPIGHLKTLKELNVAHN-------LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165

Query: 200 IEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPE-FLADF 258
               + L  +      L LS   ++  I P   K   L  + L  N  S  V +  +   
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 259 FNLTSLNLSSSGLNGTFPETILQVHTLQ--------TLDLSGNSLLRGSLPD-FPKNSSL 309
             L    L                  L+           L+        + D F   +++
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284

Query: 310 RTLMLSYANFSGVLPDSI-GNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFV 368
            +  L       V   S     ++L  ++               KL  L  L  +SNK  
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL------KLKSLKRLTFTSNKGG 338

Query: 369 GPIPSLHMSKNLTHLDLSNNAL-PGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIP 427
                + +  +L  LDLS N L      S      ++L Y+DL  N +  ++  +   + 
Sbjct: 339 NAFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLE 396

Query: 428 MLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNK 487
            L+ L   ++            S   L  LD+S              L +L++L ++ N 
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 488 LNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPN--LKS 545
                       LRNL  L+LS   L   +    +  S ++ L +AS +LK +P+     
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516

Query: 546 QSKLFNLDLSDNQISGEIPNWVW 568
            + L  + L  N      P   +
Sbjct: 517 LTSLQKIWLHTNPWDCSCPRIDY 539

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  141 bits (358), Expect = 3e-35
 Identities = 111/607 (18%), Positives = 186/607 (30%), Gaps = 100/607 (16%)

Query: 361 DLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIP 420
                 F   IP  ++  +  +LDLS N L   + S  +     L  +DL    +     
Sbjct: 13  QCMELNFYK-IPD-NLPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 421 RSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKI 480
            +  S+  L  L+L  N     +   + +  S+L  L      L       I  LK LK 
Sbjct: 70  GAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 481 LMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGD----SSFPSQVRTLRLASCK 536
           L ++ N +           L NL  L+LS N +      D       P    +L L+   
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 537 LKVIP-NLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSIS 595
           +  I      + +L  L L +N  S  +     +    GL  L +   +L   +   ++ 
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ----GLAGLEVHRLVLGEFRNEGNLE 244

Query: 596 DLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNS 655
             +   +  L +  ++               +   +      D+ N +     FSL S +
Sbjct: 245 KFDKSALEGLCNLTIEEF-----------RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293

Query: 656 ITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPG 715
           I  V   +         L+L N K                         L          
Sbjct: 294 IERVKDFSYNFG--WQHLELVNCKFG-----------------QFPTLKLKS-------- 326

Query: 716 NCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIR--DTFPCWLKNISSLRVLVLR 773
              L+ L    N+       S  +   LE LDL  N +             +SL+ L L 
Sbjct: 327 ---LKRLTFTSNKG--GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 774 SNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVH 833
            N     IT   N      L+ +D   +N                       +   +   
Sbjct: 382 FNGV---ITMSSNFLGLEQLEHLDFQHSNL----------------------KQMSEFSV 416

Query: 834 FELLTDIFY--------QDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKI-GR 884
           F  L ++ Y        +      + G        LS    +  + N+F       I   
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNG--------LSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 885 LKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHN 944
           L++L  L+ SQ       P+   +L  L+ L+++ N L          LT L  + L  N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

Query: 945 NLEGNIP 951
             + + P
Sbjct: 529 PWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  125 bits (316), Expect = 5e-30
 Identities = 91/517 (17%), Positives = 162/517 (31%), Gaps = 86/517 (16%)

Query: 456 TLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTV 515
           T           IP ++    + K L LS N L   +   +      L  L+LS   +  
Sbjct: 11  TYQCMELNFYK-IPDNLPF--STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 516 NASGDSSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEIPNWVWEIGNG 573
              G     S + TL L    ++ +        S L  L   +  ++      +  +   
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT- 125

Query: 574 GLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQG-------NIPHPPRNAVLVDY 626
            L+ LN++HNL+ S + P   S+L  +  LDL SN++Q         +   P   + +D 
Sbjct: 126 -LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 627 SNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPT 686
           S N     I       +      +L +N  +  + +T  +   L  L++    L      
Sbjct: 185 SLNPMNF-IQPGAFKEIRLHKL-TLRNNFDSLNVMKTCIQG--LAGLEVHRLVLGEFRNE 240

Query: 687 CLIKMSDI--------LGVLNLRGNSLSGTLSV---TFPGNCGLQTLDLNENQLGGTVPK 735
             ++  D         L +   R   L   L      F     + +  L    +      
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD- 299

Query: 736 SLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQI 795
             +     + L+L N K        LK+   L+ L   SN          ++   P L+ 
Sbjct: 300 -FSYNFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNK----GGNAFSEVDLPSLEF 351

Query: 796 VDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREM 855
           +D++ N                                               ++KG   
Sbjct: 352 LDLSRNGL---------------------------------------------SFKGCCS 366

Query: 856 ELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGG-PIPSTIGNLQQLES 914
           +     +    +D S N     +      L+ L  L+F  +        S   +L+ L  
Sbjct: 367 QSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 915 LDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIP 951
           LD+S  H           L+ L VL ++ N+ + N  
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 83.6 bits (207), Expect = 1e-16
 Identities = 63/345 (18%), Positives = 110/345 (31%), Gaps = 31/345 (8%)

Query: 624 VDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGK 683
                 +F   IP ++  S   T    LS N +  +   +      L VLDLS  ++   
Sbjct: 12  YQCMELNFYK-IPDNLPFS---TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 684 MPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKL 743
                  +S  L  L L GN +       F G   LQ L   E  L       + + + L
Sbjct: 68  EDGAYQSLSH-LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 744 EVLDLGNNKIRD-TFPCWLKNISSLRVLVLRSNSFYGSITCRENDD--SWPMLQIVDIAS 800
           + L++ +N I+    P +  N+++L  L L SN    SI C +       P+L +    S
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 801 NNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKG-REMELVK 859
            N    +                     FK++    LT     D + V     + +  ++
Sbjct: 186 LNPMNFIQPGA-----------------FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 228

Query: 860 ILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQN---AFGGPIPSTIGNLQQLESLD 916
           +  +      +  N +      +  L +L    F       +   I      L  + S  
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288

Query: 917 LSMNHLSDQIPIQ-LANLTFLSVLNLSHNNLEGNIPVSTQLQSFS 960
           L    +              L ++N            S +  +F+
Sbjct: 289 LVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 333

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.4 bits (191), Expect = 9e-15
 Identities = 53/362 (14%), Positives = 106/362 (29%), Gaps = 27/362 (7%)

Query: 601 TVLDLHSNQLQGNIPHP-PRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGV 659
                        IP   P +   +D S N           +         LS   I  +
Sbjct: 10  ITYQCMELNFY-KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQ-VLDLSRCEIQTI 67

Query: 660 IPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGL 719
                    +L  L L+ N +          +S  L  L     +L+   +        L
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS-LQKLVAVETNLASLENFPIGHLKTL 126

Query: 720 QTLDLNENQLG-GTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFY 778
           + L++  N +    +P+  +N   LE LDL +NKI+  +   L+ +  + +L L  +   
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 779 GSITCRENDDSWPM-LQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELL 837
             +   +      + L  + + +N     V + CI     +            + + E  
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 838 TDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNN-FDGPIPEKIGRLKSLYGLNFSQN 896
                + +  +T                    +  + +   I +    L ++   +    
Sbjct: 247 DKSALEGLCNLT--------------IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292

Query: 897 AFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQL 956
                +     N    + L+L          ++L +L     L  + N   GN      L
Sbjct: 293 TIER-VKDFSYNFG-WQHLELVNCKFGQFPTLKLKSLK---RLTFTSNKG-GNAFSEVDL 346

Query: 957 QS 958
            S
Sbjct: 347 PS 348

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 45/261 (17%), Positives = 75/261 (28%), Gaps = 42/261 (16%)

Query: 719 LQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFY 778
            + LDL+ N L      S  +  +L+VLDL   +I+       +++S L  L+L  N   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 779 GSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLT 838
                         LQ +     N                        ++ ++     L 
Sbjct: 90  SLA--LGAFSGLSSLQKLVAVETNL-----------------------ASLENFPIGHLK 124

Query: 839 DIFYQDV----VTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSL----YG 890
            +   +V    +              L+    +D S N         +  L  +      
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSN---LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 891 LNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIP-IQLANLTFLSVLNLSHNNLEGN 949
           L+ S N     I        +L  L L  N  S  +    +  L  L V  L        
Sbjct: 182 LDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 950 IPVSTQLQSFSPTSFEGNEGL 970
                 L+ F  ++ EG   L
Sbjct: 241 ----GNLEKFDKSALEGLCNL 257

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.5 bits (108), Expect = 9e-05
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 13/106 (12%)

Query: 865 TSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSD 924
            +      NF   IP+ +    S   L+ S N        +  +  +L+ LDLS   +  
Sbjct: 10  ITYQCMELNFYK-IPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 925 QIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGL 970
                  +L+ LS L L+ N           +QS +  +F G   L
Sbjct: 67  IEDGAYQSLSHLSTLILTGN----------PIQSLALGAFSGLSSL 102

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  169 bits (431), Expect = 1e-44
 Identities = 96/543 (17%), Positives = 201/543 (37%), Gaps = 64/543 (11%)

Query: 261 LTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFS 320
               +  S     + P  +     +++LDLS N +      D    ++L+ L+L  +  +
Sbjct: 7   SGVCDGRSRSFT-SIPSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63

Query: 321 GVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKF--VGPIPSLHMSK 378
            +  D+  +L +L  LDL+  +LS    +    L+ L YL+L  N +  +G         
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123

Query: 379 NLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNK 438
           NL  L + N      I   D+  L++L  ++++  +L     +SL SI  +  L L  ++
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 439 FGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLA--- 495
               + E      S++  L+L    L       +   +    +   + + +     +   
Sbjct: 184 SAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242

Query: 496 ------AIQRLRNLIRLELSYNNLTVNASGDSSFPS--------QVRTLRLASCKLKVIP 541
                  I  L  +   + + N L      +S   S         +R L +    L    
Sbjct: 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302

Query: 542 N--LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSL--QRPYSISDL 597
           +       K+  + + ++++   +P    +     LE+L+LS NL+     +        
Sbjct: 303 STVYSLLEKVKRITVENSKVF-LVPCSFSQ-HLKSLEFLDLSENLMVEEYLKNSACKGAW 360

Query: 598 NLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFT--IFFSLSSNS 655
             +  L L  N L+                      S+       +         +S N+
Sbjct: 361 PSLQTLVLSQNHLR----------------------SMQKTGEILLTLKNLTSLDISRNT 398

Query: 656 ITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPG 715
               +P++    + +  L+LS+  +   + TC+ +    L VL++  N+L  + S+  P 
Sbjct: 399 FH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQT---LEVLDVSNNNLD-SFSLFLP- 451

Query: 716 NCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSN 775
              LQ L ++ N+L        +    L V+ +  N+++         ++SL+ + L +N
Sbjct: 452 --RLQELYISRNKL--KTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

Query: 776 SFY 778
            + 
Sbjct: 508 PWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  159 bits (403), Expect = 4e-41
 Identities = 101/516 (19%), Positives = 177/516 (34%), Gaps = 41/516 (7%)

Query: 104 LQSLNLAFNMFNATEIPSG-LGNLTNLTHLNLSNAGFAGQIPIQV-SAMTRLVTLDLSSS 161
           ++SL+L+FN    T I  G L    NL  L L ++     I      ++  L  LDLS +
Sbjct: 28  MKSLDLSFNKI--TYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDN 84

Query: 162 YSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSC 221
                 L   +         L+ L+ L L G       +       +L   L+ L + + 
Sbjct: 85  -----HLSSLSS---SWFGPLSSLKYLNLMGNPYQT--LGVTSLFPNL-TNLQTLRIGNV 133

Query: 222 YLSGPIHP-SLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETIL 280
                I     A L SL+ + +    L +   + L    ++  L L  S           
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD 193

Query: 281 QVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLAR 340
            + +++ L+L   +L R      P +     +       S +  +S   L  L R  L  
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253

Query: 341 CNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWE 400
             +     T    L  L   + S +  V  +  +     +  L +    L     ST + 
Sbjct: 254 SEVEFDDCT----LNGLGDFNPSESDVVSELGKVETV-TIRRLHIPQFYL-FYDLSTVYS 307

Query: 401 HLSNLVYVDLRNNALNGSIPRSLFS-IPMLQQLLLANNKFG--GPIPEFSNASYSALDTL 457
            L  +  + + N+ +   +P S    +  L+ L L+ N              ++ +L TL
Sbjct: 308 LLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366

Query: 458 DLSANRLE--GPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTV 515
            LS N L         +  LKNL  L +S N         + Q    +  L LS   +  
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF--HPMPDSCQWPEKMRFLNLSSTGIR- 423

Query: 516 NASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGL 575
                +  P  +  L +++  L          +L  L +S N++   +P+         L
Sbjct: 424 --VVKTCIPQTLEVLDVSNNNLDSFS--LFLPRLQELYISRNKLK-TLPDAS---LFPVL 475

Query: 576 EYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQ 611
             + +S N L S+        L  +  + LH+N   
Sbjct: 476 LVMKISRNQLKSVP-DGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  142 bits (360), Expect = 1e-35
 Identities = 92/508 (18%), Positives = 187/508 (36%), Gaps = 60/508 (11%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSG-LGNLTNLTHLNLSNAGF 139
           L L    I+  I+  +   SL  L+ L+L+ N    + + S   G L++L +LNL    +
Sbjct: 55  LILKSSRIN-TIEGDA-FYSLGSLEHLDLSDNHL--SSLSSSWFGPLSSLKYLNLMGNPY 110

Query: 140 AG-QIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAP 198
               +      +T L TL + +  +F    +            L  L  L +  +++   
Sbjct: 111 QTLGVTSLFPNLTNLQTLRIGNVETFSEIRR-------IDFAGLTSLNELEIKALSLRNY 163

Query: 199 GIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADF 258
             +  +++      +  L+L     +  +      L S+  + L   +L+      L   
Sbjct: 164 QSQSLKSI----RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVD 219

Query: 259 FNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYAN 318
              + +   +   +    E+  ++  L    L  + +      +F   +       + + 
Sbjct: 220 EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV------EFDDCTLNGLGDFNPSE 273

Query: 319 FSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVG-PIPSLHMS 377
              V          + RL + +  L   + T  + L ++  + + ++K    P       
Sbjct: 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333

Query: 378 KNLTHLDLSNNAL--PGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLA 435
           K+L  LDLS N +      +S       +L  + L  N L         S+    ++L  
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR--------SMQKTGEIL-- 383

Query: 436 NNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLA 495
                         +   L +LD+S N    P+P S    + ++ L LSS  +   V+  
Sbjct: 384 -------------LTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTC 428

Query: 496 AIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLS 555
                + L  L++S NNL       S F  +++ L ++  KLK +P+      L  + +S
Sbjct: 429 I---PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLKTLPDASLFPVLLVMKIS 481

Query: 556 DNQISGEIPNWVWEIGNGGLEYLNLSHN 583
            NQ+   +P+ +++     L+ + L  N
Sbjct: 482 RNQLK-SVPDGIFD-RLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  126 bits (318), Expect = 2e-30
 Identities = 108/621 (17%), Positives = 187/621 (30%), Gaps = 131/621 (21%)

Query: 336 LDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVG-PIPSLHMSKNLTHLDLSNNALPGAI 394
            D    + + SIP+ L     +  LDLS NK        L    NL  L L ++ +   I
Sbjct: 10  CDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-NTI 65

Query: 395 SSTDWEHLSNLVYVDLRNNALNGSIPRSLFS-IPMLQQLLLANNKFG--GPIPEFSNASY 451
               +  L +L ++DL +N L+ S+  S F  +  L+ L L  N +   G    F N + 
Sbjct: 66  EGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT- 123

Query: 452 SALDTLDLSANRLEGPIPMSIFE-LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSY 510
             L TL +        I    F  L +L  L + +  L    Q  +++ +R++  L L  
Sbjct: 124 -NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHL 181

Query: 511 NNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEI 570
           +         +   S VR L L    L             +  +              ++
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK-------------KL 228

Query: 571 GNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNS 630
              G    + S N L  L R   I +L+ +   D   N L                 N S
Sbjct: 229 AFRGSVLTDESFNELLKLLR--YILELSEVEFDDCTLNGL--------------GDFNPS 272

Query: 631 FTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIK 690
            +  +               +    +   +       + +  + + N+K+   +P     
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVP----- 326

Query: 691 MSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKS---LANCRKLEVLD 747
                                       L+ LDL+EN +     K+         L+ L 
Sbjct: 327 -------------------CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367

Query: 748 LGNNKIRD--TFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGG 805
           L  N +R        L  + +L  L +  N+F+      ++      ++ ++++S     
Sbjct: 368 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH---PMPDSCQWPEKMRFLNLSSTG--- 421

Query: 806 RVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFT 865
                                          +  +                   I     
Sbjct: 422 -------------------------------IRVVKT----------------CIPQTLE 434

Query: 866 SIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQ 925
            +D S NN D      + RL+ LY    S+N     +P        L  + +S N L   
Sbjct: 435 VLDVSNNNLDS-FSLFLPRLQELY---ISRNKLKT-LPDA-SLFPVLLVMKISRNQLKSV 488

Query: 926 IPIQLANLTFLSVLNLSHNNL 946
                  LT L  + L  N  
Sbjct: 489 PDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  111 bits (279), Expect = 2e-25
 Identities = 92/554 (16%), Positives = 177/554 (31%), Gaps = 92/554 (16%)

Query: 408 VDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGP 467
            D R+ +   SIP  L     ++ L L+ NK    I      + + L  L L ++R+   
Sbjct: 10  CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSSRINT- 64

Query: 468 IPMSIFE-LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQ 526
           I    F  L +L+ L LS N L+ ++  +    L +L  L L  N               
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQT----------- 112

Query: 527 VRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLS 586
                     L V     + + L  L + + +   EI    +  G   L  L +    L 
Sbjct: 113 ----------LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA-GLTSLNELEIKALSLR 161

Query: 587 SLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFT 646
           + Q   S+  +  +  L LH ++                       + +     + ++  
Sbjct: 162 NYQ-SQSLKSIRDIHHLTLHLSES----------------------AFLLEIFADILSSV 198

Query: 647 IFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLS 706
            +  L   ++       +   +    +     + S        ++  +L         + 
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL-------RYIL 251

Query: 707 GTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISS 766
               V F         D N ++              +  L +    +          +  
Sbjct: 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311

Query: 767 LRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQ 826
           ++ + + ++  +  + C         L+ +D++ N                   +E    
Sbjct: 312 VKRITVENSKVF-LVPCSF-SQHLKSLEFLDLSENLM----------------VEEYLKN 353

Query: 827 SNFKDVHFELLTDIFYQDVVTVTWKGREM--ELVKILSIFTSIDFSRNNFDGPIPEKIGR 884
           S  K     L T +  Q+ +    K  E+   L  +    TS+D SRN F  P+P+    
Sbjct: 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL----TSLDISRNTF-HPMPDSCQW 408

Query: 885 LKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHN 944
            + +  LN S       + +     Q LE LD+S N+L     + L  L     L +S N
Sbjct: 409 PEKMRFLNLSSTGIRV-VKT--CIPQTLEVLDVSNNNLDS-FSLFLPRLQ---ELYISRN 461

Query: 945 NLEGNIPVSTQLQS 958
            L+  +P ++    
Sbjct: 462 KLK-TLPDASLFPV 474

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  110 bits (276), Expect = 4e-25
 Identities = 68/406 (16%), Positives = 134/406 (33%), Gaps = 41/406 (10%)

Query: 547 SKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLH 606
                 D      +  IP+ +       ++ L+LS N ++ +     +     + VL L 
Sbjct: 5   DASGVCDGRSRSFT-SIPSGL----TAAMKSLDLSFNKITYIG-HGDLRACANLQVLILK 58

Query: 607 SNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICR 666
           S+++                      ++I GD   S+       LS N ++ +       
Sbjct: 59  SSRI----------------------NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96

Query: 667 AKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNL-RGNSLSGTLSVTFPGNCGLQTLDLN 725
              L  L+L  N       T L      L  L +    + S    + F G   L  L++ 
Sbjct: 97  LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156

Query: 726 ENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYG-SITCR 784
              L     +SL + R +  L L  ++       +   +SS+R L LR  +      +  
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL 216

Query: 785 ENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQD 844
             D+    ++ +    +        + +   + ++      +  F D     L D    +
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS---EVEFDDCTLNGLGDFNPSE 273

Query: 845 VVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPS 904
              V+    E+  V+ ++I   +   +      +      L+ +  +    +       S
Sbjct: 274 SDVVS----ELGKVETVTI-RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCS 328

Query: 905 TIGNLQQLESLDLSMNHLSDQIPIQ---LANLTFLSVLNLSHNNLE 947
              +L+ LE LDLS N + ++             L  L LS N+L 
Sbjct: 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.9 bits (174), Expect = 1e-12
 Identities = 51/352 (14%), Positives = 108/352 (30%), Gaps = 54/352 (15%)

Query: 624 VDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGK 683
            D  + SFTS IP  +  +        LS N IT +    +     L VL L +++++  
Sbjct: 10  CDGRSRSFTS-IPSGLTAA---MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI 65

Query: 684 MPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGG-TVPKSLANCRK 742
                  +   L  L+L  N LS   S  F     L+ L+L  N      V     N   
Sbjct: 66  EGDAFYSLGS-LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124

Query: 743 LEVLDLG-NNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASN 801
           L+ L +G      +        ++SL  L +++ S        ++  S   +  + +  +
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL--RNYQSQSLKSIRDIHHLTLHLS 182

Query: 802 NFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKIL 861
                                    +   ++  ++L+ + Y ++        +   + + 
Sbjct: 183 ES-----------------------AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVD 219

Query: 862 SIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMN- 920
            + + +            E    L  L                    L ++E  D ++N 
Sbjct: 220 EVSSPMKKLAFRGSVLTDESFNELLKLLRYILE--------------LSEVEFDDCTLNG 265

Query: 921 --HLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGL 970
               +      ++ L  +  + +   ++         L     T +   E +
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQF-----YLFYDLSTVYSLLEKV 312

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 39/237 (16%), Positives = 76/237 (32%), Gaps = 36/237 (15%)

Query: 718 GLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSF 777
                D        ++P  L     ++ LDL  NKI       L+  ++L+VL+L+S+  
Sbjct: 6   ASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR- 61

Query: 778 YGSITCREND--DSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFK--DVH 833
              I   E D   S   L+ +D++ N+    +                   S+ K  ++ 
Sbjct: 62  ---INTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGP-----------LSSLKYLNLM 106

Query: 834 FELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEK-IGRLKSLYGLN 892
                 +                L   L+   ++          I       L SL  L 
Sbjct: 107 GNPYQTL------------GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154

Query: 893 FSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGN 949
               +       ++ +++ +  L L ++  +  + I    L+ +  L L   NL   
Sbjct: 155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  163 bits (415), Expect = 3e-43
 Identities = 104/524 (19%), Positives = 190/524 (36%), Gaps = 103/524 (19%)

Query: 92  IDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMT 151
           I+      +L       L     N T+  S   +L  +T L     G      ++   + 
Sbjct: 14  INQIFTDTALAEKMKTVLGKT--NVTDTVS-QTDLDQVTTLQADRLGIKSIDGVE--YLN 68

Query: 152 RLVTLDLSSSYSFGGPLKLENPNLSGL--LQNLAELRALYLDGVNISAPGIEWCQALSSL 209
            L  ++ S++             L+ +  L+NL +L  + ++   I+         L++L
Sbjct: 69  NLTQINFSNN------------QLTDITPLKNLTKLVDILMNNNQIADI-----TPLANL 111

Query: 210 VPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSS 269
              L  L+L +  ++      L  L +L+ + L  N +S      L+   +L  L+  + 
Sbjct: 112 -TNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGN- 165

Query: 270 GLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGN 329
               T  + +  + TL+ LD+S N +    +    K ++L +L+ +    S + P  +G 
Sbjct: 166 --QVTDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGI 219

Query: 330 LKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNA 389
           L NL  L L    L      +LA LT L  LDL++N+    +  L     LT L L  N 
Sbjct: 220 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN-LAPLSGLTKLTELKLGANQ 276

Query: 390 LPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNA 449
           +    + +    L+ L  ++L  N L                           I   SN 
Sbjct: 277 I---SNISPLAGLTALTNLELNENQLED-------------------------ISPISNL 308

Query: 450 SYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELS 509
               L  L L  N +    P+S   L  L+ L   +NK++    ++++  L N+  L   
Sbjct: 309 --KNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSD---VSSLANLTNINWLSAG 361

Query: 510 YNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWE 569
           +N ++                         +  L + +++  L L+D   +    N+   
Sbjct: 362 HNQIS------------------------DLTPLANLTRITQLGLNDQAWTNAPVNY--- 394

Query: 570 IGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGN 613
                +   N   N+  +L  P +ISD    T  D+  N     
Sbjct: 395 --KANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  163 bits (414), Expect = 3e-43
 Identities = 106/529 (20%), Positives = 202/529 (38%), Gaps = 71/529 (13%)

Query: 284 TLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNL 343
            L +  ++ ++ +   +      +     +L   N +  +     +L  ++ L   R  +
Sbjct: 2   PLGSATITQDTPI-NQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58

Query: 344 SGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLS 403
                  +  L  L  ++ S+N+    I  L     L  + ++NN +      T   +L+
Sbjct: 59  K--SIDGVEYLNNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQI---ADITPLANLT 112

Query: 404 NLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANR 463
           NL  + L NN +    P  L ++  L +L L++N     I   S    ++L  L    N+
Sbjct: 113 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-ISALSG--LTSLQQLSFG-NQ 166

Query: 464 LEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSF 523
           +    P  +  L  L+ L +SSNK++    ++ + +L NL  L  + N ++ + +     
Sbjct: 167 VTDLKP--LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQIS-DITPLGIL 220

Query: 524 PSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGN-GGLEYLNLSH 582
            + +  L L   +LK I  L S + L +LDL++NQIS   P     +     L  L L  
Sbjct: 221 TN-LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-----LSGLTKLTELKLGA 274

Query: 583 NLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNS 642
           N +S++     ++ L  +T L+L+ NQL+   P                       I N 
Sbjct: 275 NQISNIS---PLAGLTALTNLELNENQLEDISP-----------------------ISNL 308

Query: 643 MNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRG 702
            N T   +L  N+I+ + P  +     L  L   NNK+S    + L  +++ +  L+   
Sbjct: 309 KNLTYL-TLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTN-INWLSAGH 362

Query: 703 NSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLK 762
           N +S    +       +  L LN+           AN      +      +    P  + 
Sbjct: 363 NQISDLTPLANLTR--ITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATIS 418

Query: 763 NISSLRVLVLRSN--SFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQ 809
           +  S     +  N  S+   ++      ++     +   +  F G V Q
Sbjct: 419 DGGSYTEPDITWNLPSYTNEVSY-----TFSQPVTIGKGTTTFSGTVTQ 462

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  147 bits (374), Expect = 6e-38
 Identities = 100/449 (22%), Positives = 169/449 (37%), Gaps = 54/449 (12%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFA 140
           L      I     +   +  L  L  +N + N    T+I   L NLT L  + ++N   A
Sbjct: 51  LQADRLGIK----SIDGVEYLNNLTQINFSNNQL--TDITP-LKNLTKLVDILMNNNQIA 103

Query: 141 GQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGL--LQNLAELRALYLDGVNISAP 198
              P+  + +T L  L L ++             ++ +  L+NL  L  L L    IS  
Sbjct: 104 DITPL--ANLTNLTGLTLFNN------------QITDIDPLKNLTNLNRLELSSNTISDI 149

Query: 199 GIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADF 258
                 ALS L   L+ LS  +          LA L +L  + +  N +S      LA  
Sbjct: 150 -----SALSGL-TSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLAKL 198

Query: 259 FNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYAN 318
            NL SL  +++ ++   P  +  +  L  L L+GN L    +      ++L  L L+   
Sbjct: 199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQ 254

Query: 319 FSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSK 378
            S + P  +  L  L+ L L    +S   P  LA LT L  L+L+ N+    I  +   K
Sbjct: 255 ISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED-ISPISNLK 309

Query: 379 NLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNK 438
           NLT+L L  N +      +    L+ L  +   NN ++     SL ++  +  L   +N+
Sbjct: 310 NLTYLTLYFNNI---SDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ 364

Query: 439 FGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQ 498
               +   +N   + +  L L+                N+ I     N     +  A I 
Sbjct: 365 ISD-LTPLAN--LTRITQLGLNDQAWTNAPVNY---KANVSIPNTVKNVTGALIAPATIS 418

Query: 499 RLRNLIRLELSYNNLTVNASGDSSFPSQV 527
              +    ++++N  +       +F   V
Sbjct: 419 DGGSYTEPDITWNLPSYTNEVSYTFSQPV 447

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  135 bits (341), Expect = 1e-33
 Identities = 88/404 (21%), Positives = 152/404 (37%), Gaps = 46/404 (11%)

Query: 91  RIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAM 150
           +I + +PL +L  L  L L  N    T+I   L NLTNL  L LS+   +    +  S +
Sbjct: 101 QIADITPLANLTNLTGLTLFNNQI--TDIDP-LKNLTNLNRLELSSNTISDISAL--SGL 155

Query: 151 TRLVTLDLSSSYSFGGPLKLENPNLSGL--LQNLAELRALYLDGVNISAPGIEWCQALSS 208
           T L  L   +              ++ L  L NL  L  L +    +S         L+ 
Sbjct: 156 TSLQQLSFGN-------------QVTDLKPLANLTTLERLDISSNKVSDI-----SVLAK 197

Query: 209 LVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSS 268
           L   L  L  ++  +S      L  L +L  + L+ N L       LA   NLT L+L++
Sbjct: 198 L-TNLESLIATNNQISDI--TPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLAN 252

Query: 269 SGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIG 328
           + ++      +  +  L  L L  N +   ++      ++L  L L+      + P  I 
Sbjct: 253 NQISN--LAPLSGLTKLTELKLGANQI--SNISPLAGLTALTNLELNENQLEDISP--IS 306

Query: 329 NLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNN 388
           NLKNL+ L L   N+S   P  ++ LT+L  L   +NK    + SL    N+  L   +N
Sbjct: 307 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-VSSLANLTNINWLSAGHN 363

Query: 389 ALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSN 448
            +          +L+ +  + L + A   +      ++ +   +         P    S+
Sbjct: 364 QISDLTP---LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPA-TISD 419

Query: 449 ASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTV 492
               +    D++ N          +       +   +   +GTV
Sbjct: 420 --GGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTV 460

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  129 bits (326), Expect = 9e-32
 Identities = 107/621 (17%), Positives = 198/621 (31%), Gaps = 164/621 (26%)

Query: 333 LSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPG 392
           L    + +      I  +   L + +   L        +    +   +T L      +  
Sbjct: 3   LGSATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVSQTDL-DQVTTLQADRLGIK- 59

Query: 393 AISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYS 452
             S    E+L+NL  ++  NN L    P  L ++  L  +L+ NN+    I   +N   +
Sbjct: 60  --SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITPLAN--LT 112

Query: 453 ALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNN 512
            L  L L  N++    P  +  L NL  L LSSN ++    ++A+  L +L +L      
Sbjct: 113 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD---ISALSGLTSLQQLSFGNQV 167

Query: 513 LTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGN 572
             +    +    + +  L ++S K+  I  L   + L +L  ++NQIS   P     +G 
Sbjct: 168 TDLKPLAN---LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-----LGI 219

Query: 573 -GGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSF 631
              L+ L+L+ N L  +    +++ L  +T LDL +NQ                      
Sbjct: 220 LTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQ---------------------- 254

Query: 632 TSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKM 691
                                   I+ + P  +     L  L L  N++S          
Sbjct: 255 ------------------------ISNLAP--LSGLTKLTELKLGANQIS---------- 278

Query: 692 SDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNN 751
            +I  +  L                  L  L+LNENQL       ++N + L  L L  N
Sbjct: 279 -NISPLAGLTA----------------LTNLELNENQL--EDISPISNLKNLTYLTLYFN 319

Query: 752 KIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKC 811
            I D  P  + +++ L+ L   +N     ++   +  +   +  +    N          
Sbjct: 320 NISDISP--VSSLTKLQRLFFYNNK----VSDVSSLANLTNINWLSAGHNQ--------- 364

Query: 812 ITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSR 871
                                    ++D+                 +  L+  T +  + 
Sbjct: 365 -------------------------ISDL---------------TPLANLTRITQLGLND 384

Query: 872 NNFDGPIPEKIGRLKSLYGLNFSQNAFGGPI-PSTIGNLQQLESLDLSMNHLSDQIPIQL 930
             +          +      N  +N  G  I P+TI +       D++ N  S       
Sbjct: 385 QAWTNAPVNYKANVSIP---NTVKNVTGALIAPATISDGGSYTEPDITWNLPSY-TNEVS 440

Query: 931 ANLTFLSVLNLSHNNLEGNIP 951
              +    +        G + 
Sbjct: 441 YTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  125 bits (317), Expect = 1e-30
 Identities = 87/510 (17%), Positives = 173/510 (33%), Gaps = 89/510 (17%)

Query: 446 FSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIR 505
           F++ + +      L    +   +     +L  +  L      +     +  ++ L NL +
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS---IDGVEYLNNLTQ 72

Query: 506 LELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPN 565
           +  S N LT + +   +   ++  + + + ++  I  L + + L  L L +NQI+   P 
Sbjct: 73  INFSNNQLT-DITPLKNLT-KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP- 129

Query: 566 WVWEIGN-GGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIP-HPPRNAVL 623
               + N   L  L LS N +S +    ++S L  +  L    NQ+    P         
Sbjct: 130 ----LKNLTNLNRLELSSNTISDIS---ALSGLTSLQQLSF-GNQVTDLKPLANLTTLER 181

Query: 624 VDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGK 683
           +D S+N  +      +    N       ++N I+ + P  +     L  L L+ N+L   
Sbjct: 182 LDISSNKVSD--ISVLAKLTNLESL-IATNNQISDITP--LGILTNLDELSLNGNQLKD- 235

Query: 684 MPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKL 743
               L  +++ L  L+L  N +S    ++      L  L L  NQ+  +    LA    L
Sbjct: 236 -IGTLASLTN-LTDLDLANNQISNLAPLSGLTK--LTELKLGANQI--SNISPLAGLTAL 289

Query: 744 EVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNF 803
             L+L  N++ D  P  + N+ +L  L L  N+    I+      S   LQ +   +N  
Sbjct: 290 TNLELNENQLEDISP--ISNLKNLTYLTLYFNN----ISDISPVSSLTKLQRLFFYNNK- 342

Query: 804 GGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSI 863
                                            ++D+                 +  L+ 
Sbjct: 343 ---------------------------------VSDV---------------SSLANLTN 354

Query: 864 FTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLS 923
              +    N      P  +  L  +  L  +  A+     +   N+    ++      L 
Sbjct: 355 INWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 412

Query: 924 DQIPIQLANLTFLSVLNLSHNNLEGNIPVS 953
              P  +++    +  +++ N       VS
Sbjct: 413 --APATISDGGSYTEPDITWNLPSYTNEVS 440

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.1 bits (154), Expect = 2e-10
 Identities = 53/265 (20%), Positives = 96/265 (36%), Gaps = 46/265 (17%)

Query: 698 LNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTF 757
             L   +++ T+S T      + TL  +   +       +     L  ++  NN++ D  
Sbjct: 29  TVLGKTNVTDTVSQTDLDQ--VTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDIT 84

Query: 758 PCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKA 817
           P  LKN++ L  +++ +N     I       +   L  + + +N      P K +T+   
Sbjct: 85  P--LKNLTKLVDILMNNNQ----IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 138

Query: 818 MMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGP 877
           +            ++    ++DI                 +  L+    + F  N     
Sbjct: 139 L------------ELSSNTISDI---------------SALSGLTSLQQLSFG-NQVTDL 170

Query: 878 IPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLS 937
            P  +  L +L  L+ S N       S +  L  LESL  + N +SD  P  L  LT L 
Sbjct: 171 KP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLD 224

Query: 938 VLNLSHNNLEGNIPVS--TQLQSFS 960
            L+L+ N L+    ++  T L    
Sbjct: 225 ELSLNGNQLKDIGTLASLTNLTDLD 249

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.7 bits (122), Expect = 2e-06
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 8/96 (8%)

Query: 865 TSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSD 924
                 + N    +      L  +  L   +   G      +  L  L  ++ S N L+D
Sbjct: 27  MKTVLGKTNVTDTVS--QTDLDQVTTLQADRL--GIKSIDGVEYLNNLTQINFSNNQLTD 82

Query: 925 QIPIQLANLTFLSVLNLSHNNLEGNIPVS--TQLQS 958
             P  L NLT L  + +++N +    P++  T L  
Sbjct: 83  ITP--LKNLTKLVDILMNNNQIADITPLANLTNLTG 116

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.6 bits (119), Expect = 4e-06
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 8/98 (8%)

Query: 865 TSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSD 924
            S+  + N      P  +G L +L  L+ + N        T+ +L  L  LDL+ N +S+
Sbjct: 202 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN 257

Query: 925 QIPIQLANLTFLSVLNLSHNNLEGNIPVS--TQLQSFS 960
             P+    LT L+ L L  N +    P++  T L +  
Sbjct: 258 LAPLS--GLTKLTELKLGANQISNISPLAGLTALTNLE 293

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  156 bits (397), Expect = 6e-41
 Identities = 62/481 (12%), Positives = 138/481 (28%), Gaps = 89/481 (18%)

Query: 299 SLPDFPKN-SSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQL 357
           ++ +  +N +  +   ++ ++    L     +  N+  LDL+   LS      LA  T+L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 358 VYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNG 417
             L+LSSN        L     L  LDL+NN +       +     ++  +   NN ++ 
Sbjct: 61  ELLNLSSNVLYE-TLDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNIS- 112

Query: 418 SIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKN 477
            +  S                                  + L+ N++     +       
Sbjct: 113 RVSCSRG---------------------------QGKKNIYLANNKITMLRDLDEGCRSR 145

Query: 478 LKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKL 537
           ++ L L  N+++             L  L L YN +                        
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY----------------------- 182

Query: 538 KVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDL 597
             +      +KL  LDLS N+++  +           + +++L +N L  +    ++   
Sbjct: 183 -DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAG--VTWISLRNNKLVLI--EKALRFS 236

Query: 598 NLMTVLDLHSNQLQGNIPHP--PRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNS 655
             +   DL  N            +N  +   +  +    + G               +  
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYC 295

Query: 656 ITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPG 715
              +      R   L+ L    + L                 L+ +G+            
Sbjct: 296 CEDLPAPFADR---LIALKRKEHAL-----------------LSGQGSETERLECERENQ 335

Query: 716 NCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSN 775
               + +D  + Q    + +     +    L+     + +      +  + L   + ++ 
Sbjct: 336 A-RQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAV 394

Query: 776 S 776
            
Sbjct: 395 G 395

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  136 bits (344), Expect = 5e-34
 Identities = 73/456 (16%), Positives = 138/456 (30%), Gaps = 36/456 (7%)

Query: 206 LSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLN 265
           +     + ++  ++   L   +        ++  + L  N LS      LA F  L  LN
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 266 LSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPD 325
           LSS+ L       +  + TL+TLDL+ N      + +     S+ TL  +  N S V   
Sbjct: 65  LSSNVLYE--TLDLESLSTLRTLDLNNN-----YVQELLVGPSIETLHAANNNISRV--- 114

Query: 326 SIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKF--VGPIPSLHMSKNLTHL 383
           S    +    + LA   ++          +++ YLDL  N+   V        S  L HL
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 384 DLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPI 443
           +L  N +            + L  +DL +N L   +     S   +  + L NNK     
Sbjct: 175 NLQYNFI---YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIE 230

Query: 444 PEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNL 503
                +    L+  DL  N          F  KN ++  ++   +   +     +     
Sbjct: 231 KALRFS--QNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVK-KLTGQNEEECTVP 286

Query: 504 IRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLK---------SQSKLFNLDL 554
                            + F  ++  L+     L      +         +Q++   +D 
Sbjct: 287 TLGHYGAYCCEDL---PAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDA 343

Query: 555 SDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRP--YSISDLNLMTVLDLHSNQLQG 612
              Q    + + V          L      L         + ++L+      +   +LQ 
Sbjct: 344 LKEQYR-TVIDQVTL-RKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQH 401

Query: 613 NIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIF 648
                    +L           +      +     +
Sbjct: 402 ATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDW 437

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  136 bits (343), Expect = 6e-34
 Identities = 65/484 (13%), Positives = 155/484 (32%), Gaps = 28/484 (5%)

Query: 234 LQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGN 293
                +  +  + L   +       +N+  L+LS + L+      +     L+ L+LS N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 294 SLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAK 353
            L      D    S+LRTL L+           +    ++  L  A  N+S  +  S   
Sbjct: 69  VLY--ETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSR-- 118

Query: 354 LTQLVYLDLSSNKFVG-PIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRN 412
                 + L++NK              + +LDL  N +     +        L +++L+ 
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 413 NALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSI 472
           N +   +   +     L+ L L++NK     PEF +A  + +  + L  N+L   I  ++
Sbjct: 179 NFIY-DVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSA--AGVTWISLRNNKLVL-IEKAL 233

Query: 473 FELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRL 532
              +NL+   L  N  +         + + +    ++   +      +    +       
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV--QTVAKQTVKKLTGQNEEECTVPTLGHY 291

Query: 533 ASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGG-----LEYLNLSHNLLSS 587
            +   + +P      +L  L   ++ +     +    +            ++       +
Sbjct: 292 GAYCCEDLPAP-FADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT 350

Query: 588 LQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTS--SIPGDIGNSMNF 645
           +              L+     L   + +  R    +D +         +          
Sbjct: 351 VI-DQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPL 409

Query: 646 TIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSL 705
            +  ++        + +   +   +   D+  +K + ++     ++  + G  +L   S 
Sbjct: 410 QLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET-QLAEENARLKKLNGEADLALASA 468

Query: 706 SGTL 709
           + TL
Sbjct: 469 NATL 472

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  135 bits (342), Expect = 9e-34
 Identities = 79/513 (15%), Positives = 142/513 (27%), Gaps = 76/513 (14%)

Query: 251 VPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLR 310
           + E   +        ++ S L             ++ LDLSGN L               
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL--------------- 46

Query: 311 TLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGP 370
                    S +    +     L  L+L+   L       L  L+ L  LDL++N     
Sbjct: 47  ---------SQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNY---- 91

Query: 371 IPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQ 430
           +  L +  ++  L  +NN     IS            + L NN +             +Q
Sbjct: 92  VQELLVGPSIETLHAANN----NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147

Query: 431 QLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNG 490
            L L  N+          AS   L+ L+L  N +   +   +     LK L LSSNKL  
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQVV-FAKLKTLDLSSNKL-- 203

Query: 491 TVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLF 550
                  Q    +  + L  N L             +R                    L 
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNKLV-------LIEKALRFS----------------QNLE 240

Query: 551 NLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQL 610
           + DL  N           +  +       ++   +  L    +  +  + T+    +   
Sbjct: 241 HFDLRGNGFHCGTLR---DFFSKNQRVQTVAKQTVKKLTGQ-NEEECTVPTLGHYGAYCC 296

Query: 611 QGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFF-------SLSSNSITGVIPET 663
           + ++P P  + ++          S  G     +                      VI + 
Sbjct: 297 E-DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQV 355

Query: 664 ICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLD 723
             R +  + L+     L  ++       +++ G   L+       L         LQ L 
Sbjct: 356 TLRKQAKITLEQKKKALDEQVSNGRRAHAELDG--TLQQAVGQIELQHATEEQSPLQLLR 413

Query: 724 LNENQLG-GTVPKSLANCRKLEVLDLGNNKIRD 755
               +     V +       +   D+  +K   
Sbjct: 414 AIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQ 446

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  133 bits (336), Expect = 5e-33
 Identities = 70/456 (15%), Positives = 149/456 (32%), Gaps = 31/456 (6%)

Query: 175 LSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKL 234
           +  + QN    +   +   ++        Q+       ++ L LS   LS      LA  
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSA----WNVKELDLSGNPLSQISAADLAPF 57

Query: 235 QSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNS 294
             L ++ L  N L   +   L     L +L+L+++ +     + +L   +++TL  + N+
Sbjct: 58  TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNN 110

Query: 295 LLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSG-SIPTSLAK 353
           + R S          + + L+    + +     G    +  LDL    +   +     A 
Sbjct: 111 ISRVSCSRGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 354 LTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNN 413
              L +L+L  N     +    +   L  LDLS+N L   +   +++  + + ++ LRNN
Sbjct: 168 SDTLEHLNLQYNFIYD-VKGQVVFAKLKTLDLSSNKL-AFMGP-EFQSAAGVTWISLRNN 224

Query: 414 ALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIF 473
            L   I ++L     L+   L  N F         +    + T+     +          
Sbjct: 225 KLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE-- 281

Query: 474 ELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNA----SGDSSFPSQVRT 529
           E     +    +      +      RL  L R E +  +   +       +    ++ R 
Sbjct: 282 ECTVPTLGHYGAYCCE-DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQRE 340

Query: 530 LRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSS 587
           +     + + + +     +     L+     +  ++ N         L+           
Sbjct: 341 IDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAE--LDGTLQQAVGQIE 398

Query: 588 LQRPY-SISDLNLMTVLDLHSNQLQGNIPHPPRNAV 622
           LQ      S L L+  +     ++         NA+
Sbjct: 399 LQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAI 434

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  121 bits (306), Expect = 4e-29
 Identities = 69/443 (15%), Positives = 132/443 (29%), Gaps = 35/443 (7%)

Query: 124 GNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLA 183
            N        ++++     +     +   +  LDLS +        L   + +  L    
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-------PLSQIS-AADLAPFT 58

Query: 184 ELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLD 243
           +L  L L    +          L SL   LR L L++ Y+       L    S+  +   
Sbjct: 59  KLELLNLSSNVLYET-----LDLESL-STLRTLDLNNNYVQ-----ELLVGPSIETLHAA 107

Query: 244 QNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDF 303
            N++S  V    +      ++ L+++ +             +Q LDL  N +   +  + 
Sbjct: 108 NNNISR-VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 304 PKN-SSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDL 362
             +  +L  L L Y     V          L  LDL+   L+  +         + ++ L
Sbjct: 165 AASSDTLEHLNLQYNFIYDVKGQV--VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISL 221

Query: 363 SSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRS 422
            +NK V    +L  S+NL H DL  N          +     +  V      +     ++
Sbjct: 222 RNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA--KQTVKKLTGQN 279

Query: 423 LFSIPMLQQLLLANNKF----GGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNL 478
                +                                L    +  E  +          
Sbjct: 280 EEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETER-LECERENQARQ 338

Query: 479 KILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLT-VNASGDSSFPSQVRTLRLASCKL 537
           + +     +   TV      R +  I LE     L    ++G  +      TL+ A  ++
Sbjct: 339 REIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI 397

Query: 538 KVIPNLKSQSKLFNLDLSDNQIS 560
           ++    + QS L  L     +  
Sbjct: 398 ELQHATEEQSPLQLLRAIVKRYE 420

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  115 bits (289), Expect = 4e-27
 Identities = 77/426 (18%), Positives = 135/426 (31%), Gaps = 65/426 (15%)

Query: 525 SQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSH 582
           ++ +  ++    LK       +S   +  LDLS N +S      +       LE LNLS 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK--LELLNLSS 67

Query: 583 NLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNS 642
           N+L        +  L+ +  LDL++N +Q  +   P    L   +NN+ +  +    G  
Sbjct: 68  NVLYETL---DLESLSTLRTLDLNNNYVQ-ELLVGPSIETL-HAANNNISR-VSCSRGQG 121

Query: 643 MNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRG 702
                   L++N IT +          +  LDL  N++       L   SD L  LNL+ 
Sbjct: 122 KKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 703 NSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLK 762
           N +             L+TLDL+ N+L   +     +   +  + L NNK+       L+
Sbjct: 179 NFIYDVKGQVVFAK--LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR 234

Query: 763 NISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDE 822
              +L    LR N F+   T R+       +Q V   +                      
Sbjct: 235 FSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVK-------------------- 273

Query: 823 DEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKI 882
                                        G+  E   + ++     +   +   P  +++
Sbjct: 274 --------------------------KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL 307

Query: 883 GRLKSL-YGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNL 941
             LK   + L   Q +    +     N  +   +D         I            L  
Sbjct: 308 IALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQ 367

Query: 942 SHNNLE 947
               L+
Sbjct: 368 KKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  114 bits (288), Expect = 7e-27
 Identities = 71/509 (13%), Positives = 149/509 (29%), Gaps = 75/509 (14%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSG-LGNLTNLTHLNLSNAGF 139
             +++ S+   + +     S   ++ L+L+ N    ++I +  L   T L  LNLS+   
Sbjct: 15  EKVTDSSLKQALASL--RQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSS--- 67

Query: 140 AGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGL--LQNLAELRALYLDGVNISA 197
                                           N  L     L++L+ LR L L+   +  
Sbjct: 68  --------------------------------N-VLYETLDLESLSTLRTLDLNNNYVQ- 93

Query: 198 PGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLAD 257
                   L    P +  L  ++  +S          +++    L  N ++         
Sbjct: 94  -------ELLVG-PSIETLHAANNNISRVSCSRGQGKKNIY---LANNKITMLRDLDEGC 142

Query: 258 FFNLTSLNLSSSGLNG-TFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSY 316
              +  L+L  + ++   F E      TL+ L+L  N +    +      + L+TL LS 
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSS 200

Query: 317 ANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHM 376
              +  +     +   ++ + L    L   I  +L     L + DL  N F         
Sbjct: 201 NKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 377 SKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLAN 436
           SKN     ++   +   ++  + E  +                      +  L++   A 
Sbjct: 259 SKNQRVQTVAKQTVKK-LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHAL 317

Query: 437 NKFGGPIP---EFSNASYSALDTLDLSANRLEGPIPMSIFE-LKNLKILMLSSNKLNGTV 492
               G      E    + +    +D    +    +   +    +    L      L+  V
Sbjct: 318 LSGQGSETERLECERENQARQREIDALKEQYRT-VIDQVTLRKQAKITLEQKKKALDEQV 376

Query: 493 QLA--AIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLF 550
                A   L   ++  +    L       S        ++               + + 
Sbjct: 377 SNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVE-QQSVQNNAIR 435

Query: 551 NLDLSDNQISGEIPNWVWEIGNGGLEYLN 579
           + D+  ++ +           N  L+ LN
Sbjct: 436 DWDMYQHKET------QLAEENARLKKLN 458

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 71.4 bits (175), Expect = 6e-13
 Identities = 46/297 (15%), Positives = 92/297 (30%), Gaps = 49/297 (16%)

Query: 660 IPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGL 719
           I E         +  ++++ L   + +      + +  L+L GN LS   +        L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWN-VKELDLSGNPLSQISAADLAPFTKL 60

Query: 720 QTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYG 779
           + L+L+ N L       L +   L  LDL NN +++     L    S+  L   +N+   
Sbjct: 61  ELLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNI-S 112

Query: 780 SITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLT- 838
            ++           + + +A+N                         +  +D+     + 
Sbjct: 113 RVS----CSRGQGKKNIYLANNKI-----------------------TMLRDLDEGCRSR 145

Query: 839 ----DIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFS 894
               D+   ++ TV +     EL         ++   N     +  ++     L  L+ S
Sbjct: 146 VQYLDLKLNEIDTVNFA----ELAASSDTLEHLNLQYNFIYD-VKGQVV-FAKLKTLDLS 199

Query: 895 QNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIP 951
            N     +     +   +  + L  N L   I   L     L   +L  N       
Sbjct: 200 SNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTL 254

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.0 bits (135), Expect = 4e-08
 Identities = 18/103 (17%), Positives = 46/103 (44%), Gaps = 3/103 (2%)

Query: 856 ELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESL 915
           E+ +  + +     + ++    +        ++  L+ S N       + +    +LE L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 916 DLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQS 958
           +LS N L +   + L +L+ L  L+L++N ++  + V   +++
Sbjct: 64  NLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-ELLVGPSIET 103

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  151 bits (385), Expect = 2e-40
 Identities = 70/350 (20%), Positives = 144/350 (41%), Gaps = 25/350 (7%)

Query: 211 PKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSG 270
            +     L    ++  +  +  +L+S++ + +    ++S   + +    NL  LNL+ + 
Sbjct: 22  AEGIRAVLQKASVTDVV--TQEELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQ 77

Query: 271 LNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNL 330
           +       +  +  L  L +  N +    +      ++LR L L+  N S +    + NL
Sbjct: 78  ITD--ISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDI--SPLANL 131

Query: 331 KNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNAL 390
             +  L+L   +   S  + L+ +T L YL ++ +K    +  +    +L  L L+ N +
Sbjct: 132 TKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKD-VTPIANLTDLYSLSLNYNQI 189

Query: 391 PGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNAS 450
                      L++L Y     N +    P  + ++  L  L + NNK    +   +N  
Sbjct: 190 EDISP---LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSPLAN-- 241

Query: 451 YSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSY 510
            S L  L++  N++     +   +L  LK+L + SN+++    ++ +  L  L  L L+ 
Sbjct: 242 LSQLTWLEIGTNQISDINAVK--DLTKLKMLNVGSNQISD---ISVLNNLSQLNSLFLNN 296

Query: 511 NNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQIS 560
           N L           + + TL L+   +  I  L S SK+ + D ++  I 
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  145 bits (369), Expect = 3e-38
 Identities = 71/413 (17%), Positives = 150/413 (36%), Gaps = 70/413 (16%)

Query: 104 LQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYS 163
             +L       N         +L       L  A     +      +  +  L ++    
Sbjct: 2   AATLATLPAPINQIF---PDADLAEGIRAVLQKASVTDVVTQ--EELESITKLVVAGE-- 54

Query: 164 FGGPLKLENPNLSGL--LQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSC 221
                      ++ +  ++ L  L  L L+G  I+         LS+L  KL  L + + 
Sbjct: 55  ----------KVASIQGIEYLTNLEYLNLNGNQITDI-----SPLSNL-VKLTNLYIGTN 98

Query: 222 YLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQ 281
            ++     +L  L +L  + L+++++S      LA+   + SLNL ++    +    +  
Sbjct: 99  KITDI--SALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHN-LSDLSPLSN 153

Query: 282 VHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARC 341
           +  L  L ++ + +    +      + L +L L+Y     +    + +L +L        
Sbjct: 154 MTGLNYLTVTESKV--KDVTPIANLTDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVN 209

Query: 342 NLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEH 401
            ++   P  +A +T+L  L + +NK    +  L     LT L++  N +   I++   + 
Sbjct: 210 QITDITP--VANMTRLNSLKIGNNKITD-LSPLANLSQLTWLEIGTNQISD-INA--VKD 263

Query: 402 LSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSA 461
           L+ L  +++ +N ++         I +L  L                   S L++L L+ 
Sbjct: 264 LTKLKMLNVGSNQIS--------DISVLNNL-------------------SQLNSLFLNN 296

Query: 462 NRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLT 514
           N+L       I  L NL  L LS N +     +  +  L  +   + +   + 
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITD---IRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  143 bits (364), Expect = 1e-37
 Identities = 81/447 (18%), Positives = 166/447 (37%), Gaps = 103/447 (23%)

Query: 309 LRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFV 368
             TL    A  + + PD+  +L    R  L + +++  +     +L  +  L ++  K  
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 369 GPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPM 428
             I  +    NL +L+L+ N +      +   +L  L  + +  N +  +   +L ++  
Sbjct: 58  S-IQGIEYLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTNKI--TDISALQNLTN 111

Query: 429 LQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKL 488
           L++L L  +     I   +N   + + +L+L AN     +   +  +  L  L ++ +K+
Sbjct: 112 LRELYLNEDNISD-ISPLAN--LTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKV 167

Query: 489 NGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSK 548
                +  I  L +L  L L+YN +                          I  L S + 
Sbjct: 168 KD---VTPIANLTDLYSLSLNYNQIED------------------------ISPLASLTS 200

Query: 549 LFNLDLSDNQISGEIPNWVWEIGN-GGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHS 607
           L       NQI+   P     + N   L  L + +N ++ L     +++L+ +T L++ +
Sbjct: 201 LHYFTAYVNQITDITP-----VANMTRLNSLKIGNNKITDLS---PLANLSQLTWLEIGT 252

Query: 608 NQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRA 667
           NQ+                      S I   + +     +  ++ SN I+ +    +   
Sbjct: 253 NQI----------------------SDINA-VKDLTKLKML-NVGSNQISDI--SVLNNL 286

Query: 668 KYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNEN 727
             L  L L+NN+L  +    +  +++                         L TL L++N
Sbjct: 287 SQLNSLFLNNNQLGNEDMEVIGGLTN-------------------------LTTLFLSQN 321

Query: 728 QLGGTVPKSLANCRKLEVLDLGNNKIR 754
            +  T  + LA+  K++  D  N  I+
Sbjct: 322 HI--TDIRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  138 bits (350), Expect = 9e-36
 Identities = 77/387 (19%), Positives = 145/387 (37%), Gaps = 47/387 (12%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFA 140
           L      I+       P   L       L     + T++ +    L ++T L ++    A
Sbjct: 5   LATLPAPIN----QIFPDADLAEGIRAVLQKA--SVTDVVT-QEELESITKLVVAGEKVA 57

Query: 141 GQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGL--LQNLAELRALYLDGVNISAP 198
               I    +T L  L+L+ +             ++ +  L NL +L  LY+    I+  
Sbjct: 58  SIQGI--EYLTNLEYLNLNGN------------QITDISPLSNLVKLTNLYIGTNKITDI 103

Query: 199 GIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADF 258
                 AL +L   LR L L+   +S      LA L  +  + L  N   S     L++ 
Sbjct: 104 -----SALQNL-TNLRELYLNEDNISDI--SPLANLTKMYSLNLGANHNLS-DLSPLSNM 154

Query: 259 FNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYAN 318
             L  L ++ S +       I  +  L +L L+ N +    +      +SL         
Sbjct: 155 TGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQI--EDISPLASLTSLHYFTAYVNQ 210

Query: 319 FSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSK 378
            + +    + N+  L+ L +    ++   P  LA L+QL +L++ +N+    I ++    
Sbjct: 211 ITDI--TPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-INAVKDLT 265

Query: 379 NLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNK 438
            L  L++ +N +      +   +LS L  + L NN L       +  +  L  L L+ N 
Sbjct: 266 KLKMLNVGSNQIS---DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322

Query: 439 FGGPIPEFSNASYSALDTLDLSANRLE 465
               I   ++   S +D+ D +   ++
Sbjct: 323 ITD-IRPLAS--LSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  114 bits (287), Expect = 1e-27
 Identities = 84/471 (17%), Positives = 151/471 (32%), Gaps = 127/471 (26%)

Query: 478 LKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKL 537
              L      +N   Q+     L   IR  L   ++T +          +  L +A  K+
Sbjct: 2   AATLATLPAPIN---QIFPDADLAEGIRAVLQKASVT-DVVTQEELE-SITKLVVAGEKV 56

Query: 538 KVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGN-GGLEYLNLSHNLLSSLQRPYSISD 596
             I  ++  + L  L+L+ NQI+   P     + N   L  L +  N ++ +    ++ +
Sbjct: 57  ASIQGIEYLTNLEYLNLNGNQITDISP-----LSNLVKLTNLYIGTNKITDIS---ALQN 108

Query: 597 LNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSI 656
           L  +  L L+ + +                      S I   + N        +L +N  
Sbjct: 109 LTNLRELYLNEDNI----------------------SDIS-PLANLTKMYSL-NLGANHN 144

Query: 657 TGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGN 716
                  +     L  L ++ +K+            D+  + NL                
Sbjct: 145 LS-DLSPLSNMTGLNYLTVTESKVK-----------DVTPIANLTD-------------- 178

Query: 717 CGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNS 776
             L +L LN NQ+       LA+   L       N+I D  P  + N++ L  L + +N 
Sbjct: 179 --LYSLSLNYNQI--EDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN- 231

Query: 777 FYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEL 836
               IT      +   L  ++I +N                                   
Sbjct: 232 ---KITDLSPLANLSQLTWLEIGTNQ---------------------------------- 254

Query: 837 LTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQN 896
           ++DI                 VK L+    ++   N         +  L  L  L  + N
Sbjct: 255 ISDI---------------NAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNN 297

Query: 897 AFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLE 947
             G      IG L  L +L LS NH++D  P  LA+L+ +   + ++  ++
Sbjct: 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.3 bits (160), Expect = 3e-11
 Identities = 43/243 (17%), Positives = 82/243 (33%), Gaps = 42/243 (17%)

Query: 718 GLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSF 777
           G  TL      +    P   A+  +     L    + D      + + S+  LV+     
Sbjct: 1   GAATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEK- 55

Query: 778 YGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELL 837
              +   +  +    L+ +++  N      P   +     +             +    +
Sbjct: 56  ---VASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNL------------YIGTNKI 100

Query: 838 TDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNA 897
           TDI                 ++ L+    +  + +N     P  +  L  +Y LN   N 
Sbjct: 101 TDI---------------SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANH 143

Query: 898 FGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVS--TQ 955
                 S + N+  L  L ++ + + D  PI  ANLT L  L+L++N +E   P++  T 
Sbjct: 144 NLS-DLSPLSNMTGLNYLTVTESKVKDVTPI--ANLTDLYSLSLNYNQIEDISPLASLTS 200

Query: 956 LQS 958
           L  
Sbjct: 201 LHY 203

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.5 bits (127), Expect = 3e-07
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 6/97 (6%)

Query: 865 TSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSD 924
           T ++   N         +  L  L  LN   N       S + NL QL SL L+ N L +
Sbjct: 246 TWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGN 301

Query: 925 QIPIQLANLTFLSVLNLSHNNLEGNIPVS--TQLQSF 959
           +    +  LT L+ L LS N++    P++  +++ S 
Sbjct: 302 EDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSA 338

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.3 bits (116), Expect = 7e-06
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 8/96 (8%)

Query: 865 TSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSD 924
             +  + +      P  I  L  LY L+ + N      P  + +L  L      +N ++D
Sbjct: 158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213

Query: 925 QIPIQLANLTFLSVLNLSHNNLEGNIPVS--TQLQS 958
             P  +AN+T L+ L + +N +    P++  +QL  
Sbjct: 214 ITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTW 247

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.5 bits (114), Expect = 1e-05
 Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 8/98 (8%)

Query: 865 TSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSD 924
                  N      P  +  +  L  L    N      P  + NL QL  L++  N +SD
Sbjct: 202 HYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD 257

Query: 925 QIPIQLANLTFLSVLNLSHNNLEGNIPVS--TQLQSFS 960
                + +LT L +LN+  N +     ++  +QL S  
Sbjct: 258 --INAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLF 293

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  152 bits (387), Expect = 8e-40
 Identities = 97/549 (17%), Positives = 175/549 (31%), Gaps = 101/549 (18%)

Query: 227 IHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQ 286
           I+P       L       ++L+  +P    +  + T    + S      P    +   + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 287 TLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGS 346
              L               +     L L+    S  LP+   +L++L     +  +L+  
Sbjct: 62  VSRLRDC-----------LDRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-E 105

Query: 347 IPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLV 406
           +P     L  L+  + +        P       L +L +SNN L       + ++ S L 
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPP------LLEYLGVSNNQL---EKLPELQNSSFLK 156

Query: 407 YVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEG 466
            +D+ NN+L   +P    S   L+ +   NN+    +PE  N     L  +    N L+ 
Sbjct: 157 IIDVDNNSLK-KLPDLPPS---LEFIAAGNNQLEE-LPELQNLP--FLTAIYADNNSLKK 209

Query: 467 PIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQ 526
                     +L+ ++  +N L    +L  +Q L  L  +    N L          P  
Sbjct: 210 LPD----LPLSLESIVAGNNILE---ELPELQNLPFLTTIYADNNLLKTL----PDLPPS 258

Query: 527 VRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLS 586
           +  L +    L  +P L     L  LD+S+N  S  +           L YLN S N + 
Sbjct: 259 LEALNVRDNYLTDLPELPQS--LTFLDVSENIFS-GLSELP-----PNLYYLNASSNEIR 310

Query: 587 SLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFT 646
           SL           +  L++ +N+L                        +P          
Sbjct: 311 SL-----CDLPPSLEELNVSNNKL----------------------IELPALPPRLERL- 342

Query: 647 IFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLS 706
                S N +   +PE       L  L +  N L  + P     + D+   +N     + 
Sbjct: 343 ---IASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIPESVEDLR--MNSHLAEVP 392

Query: 707 GTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISS 766
                       L+ L +  N L    P    +   +E L + + ++ D +    +    
Sbjct: 393 ELPQ-------NLKQLHVETNPLR-EFPDIPES---VEDLRMNSERVVDPYEFAHETTDK 441

Query: 767 LRVLVLRSN 775
           L   V   +
Sbjct: 442 LEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  143 bits (363), Expect = 1e-36
 Identities = 98/522 (18%), Positives = 174/522 (33%), Gaps = 91/522 (17%)

Query: 99  LSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDL 158
           +S  +LQ      +  N TE+P    N+ + T    + + +    P        +    L
Sbjct: 8   VSNTFLQEPLRHSS--NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 159 SSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSL 218
                                    +   L L+ + +S        +L  L P L  L  
Sbjct: 66  RDC-------------------LDRQAHELELNNLGLS--------SLPELPPHLESLVA 98

Query: 219 SSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPET 278
           S   L+  +      L+SL V   +   LS   P        L  L +S++ L    PE 
Sbjct: 99  SCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLPE- 148

Query: 279 ILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDL 338
           +     L+ +D+  NSL    LPD P +  L  +          LP+ + NL  L+ +  
Sbjct: 149 LQNSSFLKIIDVDNNSL--KKLPDLPPS--LEFIAAGNNQLE-ELPE-LQNLPFLTAIYA 202

Query: 339 ARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTD 398
              +L   +P     L     +   +N     +P L     LT +   NN L      T 
Sbjct: 203 DNNSLK-KLPDLPLSLE---SIVAGNNILEE-LPELQNLPFLTTIYADNNLL-----KTL 252

Query: 399 WEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLD 458
            +   +L  +++R+N L   +P    S+  L       +     + E        L  L+
Sbjct: 253 PDLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSG----LSELP----PNLYYLN 303

Query: 459 LSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNAS 518
            S+N +            +L+ L +S+NKL     L        L RL  S+N+L     
Sbjct: 304 ASSNEIRSLCD----LPPSLEELNVSNNKLIELPAL-----PPRLERLIASFNHLAE--- 351

Query: 519 GDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYL 578
                P  ++ L +    L+  P++    +   ++    ++     N         L+ L
Sbjct: 352 -VPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQN---------LKQL 401

Query: 579 NLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRN 620
           ++  N L     P     +     L ++S ++          
Sbjct: 402 HVETNPLREF--PDIPESV---EDLRMNSERVVDPYEFAHET 438

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  142 bits (361), Expect = 2e-36
 Identities = 91/488 (18%), Positives = 168/488 (34%), Gaps = 93/488 (19%)

Query: 227 IHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQ 286
           +      ++S +      ++     P    +   +    L                    
Sbjct: 26  MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQ-----------AH 74

Query: 287 TLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGS 346
            L+L+   L   SLP+ P +  L +L+ S  + +  LP+   +LK+L   +     LS  
Sbjct: 75  ELELNNLGL--SSLPELPPH--LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDL 129

Query: 347 IPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNAL---PGAISS------- 396
            P        L YL +S+N+    +P L  S  L  +D+ NN+L   P    S       
Sbjct: 130 PP-------LLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAG 181

Query: 397 -------TDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNA 449
                   + ++L  L  +   NN+L   +P    S   L+ ++  NN     +PE  N 
Sbjct: 182 NNQLEELPELQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNILEE-LPELQN- 235

Query: 450 SYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELS 509
               L T+    N L+  +P       +L+ L +  N L    +L   Q L  L   E  
Sbjct: 236 -LPFLTTIYADNNLLKT-LPDLP---PSLEALNVRDNYLTDLPEL--PQSLTFLDVSENI 288

Query: 510 YNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWE 569
           ++ L+         P  +  L  +S +++ + +L     L  L++S+N++  E+P     
Sbjct: 289 FSGLS-------ELPPNLYYLNASSNEIRSLCDL--PPSLEELNVSNNKLI-ELPA---L 335

Query: 570 IGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNN 629
                LE L  S N L+ +  P    +L     L +  N L+   P  P +   +  +++
Sbjct: 336 PPR--LERLIASFNHLAEV--PELPQNL---KQLHVEYNPLR-EFPDIPESVEDLRMNSH 387

Query: 630 SFTSSIPGDIGN----------------SMNFTIFFSLSSNSITGVIPETICRAKYLLVL 673
              + +P    N                         ++S  +             L   
Sbjct: 388 L--AEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDD 445

Query: 674 DLSNNKLS 681
              ++   
Sbjct: 446 VFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  109 bits (275), Expect = 3e-25
 Identities = 86/422 (20%), Positives = 146/422 (34%), Gaps = 89/422 (21%)

Query: 100 SLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLS 159
              +L+SL  + N    TE+P    +L +L   N +    +   P        L  L +S
Sbjct: 89  LPPHLESLVASCNSL--TELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVS 139

Query: 160 SSYSFGGPLKLENPNLSGL--LQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLS 217
                       N  L  L  LQN + L+ + +D  ++          L  L P L  ++
Sbjct: 140 ------------NNQLEKLPELQNSSFLKIIDVDNNSLKK--------LPDLPPSLEFIA 179

Query: 218 LSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPE 277
             +  L     P L  L  L+ I  D N L   +P+      +L S+   ++ L      
Sbjct: 180 AGNNQLEEL--PELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNIL--EELP 231

Query: 278 TILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLD 337
            +  +  L T+    N L   +LPD P +  L  L +   N+   LP+   +L  L   +
Sbjct: 232 ELQNLPFLTTIYADNNLL--KTLPDLPPS--LEALNVRD-NYLTDLPELPQSLTFLDVSE 286

Query: 338 LARCNLSGSIPTSLAKL--------------TQLVYLDLSSNKFVGPIPSLHMSKNLTHL 383
                LS  +P +L  L                L  L++S+NK +  +P+L     L  L
Sbjct: 287 NIFSGLS-ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALP--PRLERL 342

Query: 384 DLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFS----------------IP 427
             S N L             NL  + +  N L    P    S                  
Sbjct: 343 IASFNHLAEVPEL-----PQNLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQ 396

Query: 428 MLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNK 487
            L+QL +  N      P+       +++ L +++ R+  P   +      L+  +   + 
Sbjct: 397 NLKQLHVETNPLRE-FPD----IPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

Query: 488 LN 489
            +
Sbjct: 452 HH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 98.5 bits (246), Expect = 1e-21
 Identities = 86/536 (16%), Positives = 171/536 (31%), Gaps = 106/536 (19%)

Query: 402 LSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIP------------EFSNA 449
            + L      ++ L   +P    ++    +   A +++    P               + 
Sbjct: 10  NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 450 SYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQL-AAIQRLRNLIRLEL 508
                  L+L+   L   +P       +L+ L+ S N L    +L    Q L++L+    
Sbjct: 69  LDRQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT---ELPELPQSLKSLLVDNN 121

Query: 509 SYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVW 568
           +   L       S  P  +  L +++ +L+ +P L++ S L  +D+ +N +  ++P+   
Sbjct: 122 NLKAL-------SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLP- 172

Query: 569 EIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSN 628
                 LE++   +N L  L     + +L  +T +   +N L                  
Sbjct: 173 ----PSLEFIAAGNNQLEELP---ELQNLPFLTAIYADNNSL------------------ 207

Query: 629 NSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCL 688
                 +P    +           +N +       +    +L  +   NN L   +P   
Sbjct: 208 ----KKLPDLPLS----LESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLP 256

Query: 689 IKMSDILGVLNLRGNSLSGTLSVTFPGNCG-LQTLDLNENQLGGTVPKSLANCRKLEVLD 747
                 L  LN+R N L+       P     L  LD++EN     + +   N   L  L+
Sbjct: 257 PS----LEALNVRDNYLT-----DLPELPQSLTFLDVSENIFS-GLSELPPN---LYYLN 303

Query: 748 LGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRV 807
             +N+IR           SL  L + +N         E     P L+ +  + N+    V
Sbjct: 304 ASSNEIRSLCDLP----PSLEELNVSNNKL------IELPALPPRLERLIASFNHLA-EV 352

Query: 808 PQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSI 867
           P+    + K +         + +        DI    V  +       E+ ++      +
Sbjct: 353 PE-LPQNLKQL---------HVEYNPLREFPDIPES-VEDLRMNSHLAEVPELPQNLKQL 401

Query: 868 DFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLS 923
               N      P+    ++ L     +      P         +LE      +H  
Sbjct: 402 HVETNPLRE-FPDIPESVEDLR---MNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 88.1 bits (219), Expect = 3e-18
 Identities = 80/474 (16%), Positives = 154/474 (32%), Gaps = 91/474 (19%)

Query: 468 IPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQV 527
           I         L+  +  S+ L  T      + +++      +++    NA   +    ++
Sbjct: 3   INPRNVSNTFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 528 RTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSS 587
              RL  C  +         +   L+L++  +S  +P       +  LE L  S N L+ 
Sbjct: 61  AVSRLRDCLDR---------QAHELELNNLGLS-SLPE---LPPH--LESLVASCNSLTE 105

Query: 588 LQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTI 647
           L  P     L  + V + +   L    P                                
Sbjct: 106 L--PELPQSLKSLLVDNNNLKALSDLPPL-----------------------------LE 134

Query: 648 FFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSG 707
           +  +S+N +   +PE +  + +L ++D+ NN L  K+P         L  +    N L  
Sbjct: 135 YLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDLPPS----LEFIAAGNNQLE- 186

Query: 708 TLSVTFPGNC-GLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISS 766
              +    N   L  +  + N L   +P    +   LE +  GNN +       L+N+  
Sbjct: 187 --ELPELQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNIL--EELPELQNLPF 238

Query: 767 LRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQ 826
           L  +   +N        +   D  P L+ +++  +N+   +P +   S   +  D  E  
Sbjct: 239 LTTIYADNNLL------KTLPDLPPSLEALNV-RDNYLTDLP-ELPQSLTFL--DVSENI 288

Query: 827 SNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLK 886
            +        L  +                L  +      ++ S N     +P    RL+
Sbjct: 289 FSGLSELPPNLYYLNASSN-------EIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLE 340

Query: 887 SLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLN 940
            L     S N     +P    NL+    L +  N L  + P    ++  L + +
Sbjct: 341 RLI---ASFNHLAE-VPELPQNLK---QLHVEYNPLR-EFPDIPESVEDLRMNS 386

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.4 bits (108), Expect = 8e-05
 Identities = 24/109 (22%), Positives = 37/109 (33%), Gaps = 21/109 (19%)

Query: 865 TSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPS---------------TIGNL 909
            S+  S N+    +PE    LKSL   N +  A     P                 + N 
Sbjct: 94  ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNS 152

Query: 910 QQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQS 958
             L+ +D+  N L   +P    +L     +   +N LE  +P    L  
Sbjct: 153 SFLKIIDVDNNSLKK-LPDLPPSLE---FIAAGNNQLE-ELPELQNLPF 196

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 6e-04
 Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 18/109 (16%)

Query: 861 LSIFTSIDFSRNNFDGPIPEKIGRL-------------KSLYGLNFSQNAFGGPIPSTIG 907
           +   T    + + ++   P   G               +  + L  +       +P    
Sbjct: 33  VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL-SSLPELPP 91

Query: 908 NLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQL 956
           +   LESL  S N L++ +P    +L  L V N +   L    P+   L
Sbjct: 92  H---LESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYL 136

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  138 bits (349), Expect = 6e-36
 Identities = 62/339 (18%), Positives = 112/339 (33%), Gaps = 43/339 (12%)

Query: 299 SLPDFPKN-SSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQL 357
           ++ +  +N +  +   ++ ++    L     +  N+  LDL+   LS      LA  T+L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 358 VYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNG 417
             L+LSSN        L     L  LDL+NN +       +     ++  +   NN ++ 
Sbjct: 61  ELLNLSSNVLYE-TLDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNIS- 112

Query: 418 SIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEG-PIPMSIFELK 476
            +  S       + + LANNK    + +      S +  LDL  N ++            
Sbjct: 113 RVSCSRG--QGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 477 NLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCK 536
            L+ L L  N +     +        L  L+LS N L                       
Sbjct: 170 TLEHLNLQYNFI---YDVKGQVVFAKLKTLDLSSNKLA---------------------- 204

Query: 537 LKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISD 596
             + P  +S + +  + L +N++   I   +    N  LE+ +L  N           S 
Sbjct: 205 -FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN--LEHFDLRGNGFHCGTLRDFFSK 260

Query: 597 LNLMTVLDLHSNQ-LQGNIPHPPRNAVLVDYSNNSFTSS 634
              +  +   + + L G          L  Y        
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  118 bits (298), Expect = 3e-29
 Identities = 66/331 (19%), Positives = 111/331 (33%), Gaps = 25/331 (7%)

Query: 206 LSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLN 265
           +     + ++  ++   L   +        ++  + L  N LS      LA F  L  LN
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 266 LSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPD 325
           LSS+ L       +  + TL+TLDL+ N      + +     S+ TL  +  N S V   
Sbjct: 65  LSSNVL--YETLDLESLSTLRTLDLNNN-----YVQELLVGPSIETLHAANNNISRV--- 114

Query: 326 SIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKF--VGPIPSLHMSKNLTHL 383
           S    +    + LA   ++          +++ YLDL  N+   V        S  L HL
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 384 DLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPI 443
           +L  N +            + L  +DL +N L   +     S   +  + L NNK     
Sbjct: 175 NLQYNFI---YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIE 230

Query: 444 PEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNL 503
                +    L+  DL  N          F  KN ++  ++   +    +L         
Sbjct: 231 KALRFS--QNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVK---KLTGQNEEECT 284

Query: 504 IRLELSYNNLTVNASGDSSFPSQVRTLRLAS 534
           +     Y         D   P   R + L  
Sbjct: 285 VPTLGHYGAYCCE---DLPAPFADRLIALGH 312

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  117 bits (294), Expect = 1e-28
 Identities = 64/337 (18%), Positives = 116/337 (34%), Gaps = 25/337 (7%)

Query: 252 PEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRT 311
            E   +        ++ S L             ++ LDLSGN L + S  D    + L  
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 312 LMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPI 371
           L LS       L   + +L  L  LDL    +       L     +  L  ++N     +
Sbjct: 63  LNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR-V 114

Query: 372 PSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFS-IPMLQ 430
                 +   ++ L+NN +   +   D    S + Y+DL+ N ++      L +    L+
Sbjct: 115 SCSRG-QGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 431 QLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNG 490
            L L  N     +       ++ L TLDLS+N+L   +         +  + L +NKL  
Sbjct: 173 HLNLQYNFIYD-VKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV- 227

Query: 491 TVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQS-KL 549
            ++  A++  +NL   +L  N      +    F    R   +A   +K +     +   +
Sbjct: 228 LIE-KALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 550 FNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLS 586
             L         ++P             + L H+   
Sbjct: 286 PTLGHYGAYCCEDLPA------PFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  113 bits (286), Expect = 1e-27
 Identities = 65/280 (23%), Positives = 108/280 (38%), Gaps = 18/280 (6%)

Query: 525 SQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSH 582
           ++ +  ++    LK       +S   +  LDLS N +S      +       LE LNLS 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK--LELLNLSS 67

Query: 583 NLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNS 642
           N+L        +  L+ +  LDL++N +Q  +   P    L   +NN+ +  +    G  
Sbjct: 68  NVLYETL---DLESLSTLRTLDLNNNYVQ-ELLVGPSIETL-HAANNNISR-VSCSRGQG 121

Query: 643 MNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRG 702
                   L++N IT +          +  LDL  N++       L   SD L  LNL+ 
Sbjct: 122 KKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 703 NSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLK 762
           N +             L+TLDL+ N+L   +     +   +  + L NNK+       L+
Sbjct: 179 NFIYDVKGQVVFAK--LKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALR 234

Query: 763 NISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNN 802
              +L    LR N F+   T R+       +Q V   +  
Sbjct: 235 FSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  102 bits (257), Expect = 6e-24
 Identities = 56/319 (17%), Positives = 102/319 (31%), Gaps = 34/319 (10%)

Query: 119 IPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGL 178
           I     N        ++++     +     +   +  LDLS            N  LS +
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSG-----------N-PLSQI 49

Query: 179 ----LQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKL 234
               L    +L  L L    +          L SL   LR L L++ Y+       L   
Sbjct: 50  SAADLAPFTKLELLNLSSNVLYET-----LDLESL-STLRTLDLNNNYVQ-----ELLVG 98

Query: 235 QSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNS 294
            S+  +    N++S  V    +      ++ L+++ +             +Q LDL  N 
Sbjct: 99  PSIETLHAANNNISR-VS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155

Query: 295 LLRGSLPDFPKN-SSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAK 353
           +   +  +   +  +L  L L Y      +   +     L  LDL+   L+  +      
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQS 212

Query: 354 LTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNN 413
              + ++ L +NK V    +L  S+NL H DL  N          +     +  V  +  
Sbjct: 213 AAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

Query: 414 ALNGSIPRSLFSIPMLQQL 432
                      ++P L   
Sbjct: 273 KKLTGQNEEECTVPTLGHY 291

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 94.3 bits (235), Expect = 5e-21
 Identities = 58/348 (16%), Positives = 111/348 (31%), Gaps = 62/348 (17%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSG-LGNLTNLTHLNLSNAGF 139
             +++ S+   + +     S   ++ L+L+ N    ++I +  L   T L  LNLS+   
Sbjct: 15  EKVTDSSLKQALASL--RQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSS--- 67

Query: 140 AGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGL--LQNLAELRALYLDGVNISA 197
                                           N  L     L++L+ LR L L+   +  
Sbjct: 68  --------------------------------N-VLYETLDLESLSTLRTLDLNNNYVQ- 93

Query: 198 PGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLAD 257
                   L    P +  L  ++  +S     S ++ Q    I L  N ++         
Sbjct: 94  -------ELLVG-PSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKITMLRDLDEGC 142

Query: 258 FFNLTSLNLSSSGLNG-TFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSY 316
              +  L+L  + ++   F E      TL+ L+L  N +    +      + L+TL LS 
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSS 200

Query: 317 ANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHM 376
              +  +     +   ++ + L    L   I  +L     L + DL  N F         
Sbjct: 201 NKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 377 SKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLF 424
           SKN     ++   +     +   E    +  +          +P    
Sbjct: 259 SKNQRVQTVAKQTVKK--LTGQNEEECTVPTLGHYGAYCCEDLPAPFA 304

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 76.6 bits (189), Expect = 4e-15
 Identities = 51/298 (17%), Positives = 86/298 (28%), Gaps = 63/298 (21%)

Query: 650 SLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTL 709
            ++ +S+   +      A  +  LDLS N LS      L   +  L +LNL  N L  TL
Sbjct: 16  KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETL 74

Query: 710 SVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRV 769
                    L+TLDLN N +     + L     +E L   NN I              + 
Sbjct: 75  D--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVS--CSRGQGKKN 124

Query: 770 LVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNF 829
           + L +N    ++    ++     +Q +D+  N                            
Sbjct: 125 IYLANNKI--TMLRDLDEGCRSRVQYLDLKLNE--------------------------- 155

Query: 830 KDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLY 889
                  +  +               EL         ++   N     +  ++     L 
Sbjct: 156 -------IDTV------------NFAELAASSDTLEHLNLQYNFIYD-VKGQVV-FAKLK 194

Query: 890 GLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLE 947
            L+ S N     +     +   +  + L  N L   I   L     L   +L  N   
Sbjct: 195 TLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.9 bits (164), Expect = 5e-12
 Identities = 37/232 (15%), Positives = 66/232 (28%), Gaps = 42/232 (18%)

Query: 719 LQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFY 778
            +   + ++ L   +     +   ++ LDL  N +       L   + L +L L SN   
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-- 69

Query: 779 GSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDED-EAQSN-FKDVHFEL 836
             +    + +S   L+ +D+ +N          +       S E   A +N    V    
Sbjct: 70  --LYETLDLESLSTLRTLDLNNNY---------VQELLVGPSIETLHAANNNISRVSCSR 118

Query: 837 LTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQN 896
                                        +I  + N          G    +  L+   N
Sbjct: 119 GQGK------------------------KNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

Query: 897 AFGG-PIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLE 947
                       +   LE L+L  N + D +         L  L+LS N L 
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIYD-VK-GQVVFAKLKTLDLSSNKLA 204

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 18/103 (17%), Positives = 46/103 (44%), Gaps = 3/103 (2%)

Query: 856 ELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESL 915
           E+ +  + +     + ++    +        ++  L+ S N       + +    +LE L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 916 DLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQS 958
           +LS N L +   + L +L+ L  L+L++N ++  + V   +++
Sbjct: 64  NLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-ELLVGPSIET 103

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 20/69 (28%), Positives = 28/69 (40%)

Query: 878 IPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLS 937
           I E             + ++    + S   +   ++ LDLS N LS      LA  T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 938 VLNLSHNNL 946
           +LNLS N L
Sbjct: 62  LLNLSSNVL 70

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 41/241 (17%), Positives = 70/241 (29%), Gaps = 50/241 (20%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFA 140
           + L+   I+   D          +Q L+L  N  +         +   L HLNL      
Sbjct: 125 IYLANNKITMLRDLD--EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 141 GQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGI 200
             +  QV    +L TLDLSS           N  L+ +                      
Sbjct: 183 -DVKGQVV-FAKLKTLDLSS-----------N-KLAFMGPEFQSA--------------- 213

Query: 201 EWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSS-PVPEFLADFF 259
                       +  +SL +  L   I  +L   Q+L    L  N      + +F +   
Sbjct: 214 ----------AGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

Query: 260 NLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANF 319
            + ++   +            +  T+ TL   G         D P   + R + L + + 
Sbjct: 263 RVQTVAKQT---VKKLTGQNEEECTVPTLGHYGAYCCE----DLPAPFADRLIALGHHHH 315

Query: 320 S 320
            
Sbjct: 316 H 316

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  141 bits (358), Expect = 8e-36
 Identities = 76/355 (21%), Positives = 134/355 (37%), Gaps = 45/355 (12%)

Query: 286 QTLDLSGNSLLRGSLPDFPKN--SSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNL 343
           + +       +       P+   +  R L L       +  D   +  +L  L+L    +
Sbjct: 14  RAVLCHRKRFVA-----VPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV 68

Query: 344 SGSIPTSLAKLTQLVYLDLSSNKFVG-PIPSLHMSKNLTHLDLSNNALPGAISSTDWEHL 402
           S   P +   L  L  L L SN+    P+       NLT LD+S N +   +    ++ L
Sbjct: 69  SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI-VILLDYMFQDL 127

Query: 403 SNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSAN 462
            NL  +++ +N L   I    FS                          ++L+ L L   
Sbjct: 128 YNLKSLEVGDNDLV-YISHRAFS------------------------GLNSLEQLTLEKC 162

Query: 463 RLEGPIPMSIFE-LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDS 521
            L   IP      L  L +L L    +N  ++  + +RL  L  LE+S+       + + 
Sbjct: 163 NLTS-IPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

Query: 522 SFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLN 579
            +   + +L +  C L  +P   ++    L  L+LS N IS  I   +       L+ + 
Sbjct: 221 LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLH-ELLRLQEIQ 278

Query: 580 LSHNLLSSLQRPYSISDLNLMTVLDLHSNQL---QGNIPHPPRNAVLVDYSNNSF 631
           L    L+ ++ PY+   LN + VL++  NQL   + ++ H   N   +   +N  
Sbjct: 279 LVGGQLAVVE-PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  136 bits (345), Expect = 3e-34
 Identities = 83/330 (25%), Positives = 130/330 (39%), Gaps = 15/330 (4%)

Query: 262 TSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSG 321
            ++           PE I      + LDL  N +   +  +F     L  L L+    S 
Sbjct: 14  RAVLCHRKRFV-AVPEGIPT--ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70

Query: 322 VLPDSIGNLKNLSRLDLARCNLSGSIPT-SLAKLTQLVYLDLSSNKFVG-PIPSLHMSKN 379
           V P +  NL NL  L L    L   IP      L+ L  LD+S NK V           N
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129

Query: 380 LTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFS-IPMLQQLLLANNK 438
           L  L++ +N L   IS   +  L++L  + L    L  SIP    S +  L  L L +  
Sbjct: 130 LKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLN 187

Query: 439 FGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQ 498
               I ++S      L  L++S       +  +     NL  L ++   L   V   A++
Sbjct: 188 INA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVR 245

Query: 499 RLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSD 556
            L  L  L LSYN ++           +++ ++L   +L V+     +  + L  L++S 
Sbjct: 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305

Query: 557 NQISGEIPNWVWEIGNGGLEYLNLSHNLLS 586
           NQ++  +   V+    G LE L L  N L+
Sbjct: 306 NQLT-TLEESVFH-SVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  133 bits (337), Expect = 4e-33
 Identities = 73/352 (20%), Positives = 137/352 (38%), Gaps = 38/352 (10%)

Query: 456 TLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTV 515
            +     R    +P  I      ++L L  N++  T+         +L  LEL+ N ++ 
Sbjct: 15  AVLCHRKRFVA-VPEGIPT--ETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVSA 70

Query: 516 NASGDSSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEIPNWVWEIGNG 573
              G  +    +RTL L S +LK+IP       S L  LD+S+N+I   + +++++    
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQ-DLY 128

Query: 574 GLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTS 633
            L+ L +  N L  +    + S LN +  L L    L                      +
Sbjct: 129 NLKSLEVGDNDLVYIS-HRAFSGLNSLEQLTLEKCNL----------------------T 165

Query: 634 SIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSD 693
           SIP +  + ++  I   L   +I  +   +  R   L VL++S+      M    +   +
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225

Query: 694 ILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKI 753
            L  L++   +L+    +       L+ L+L+ N +       L    +L+ + L   ++
Sbjct: 226 -LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284

Query: 754 RDTFPCWLKNISSLRVLVLRSNSFYGSITCREND--DSWPMLQIVDIASNNF 803
               P   + ++ LRVL +  N     +T  E     S   L+ + + SN  
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSGN----QLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  130 bits (328), Expect = 5e-32
 Identities = 67/304 (22%), Positives = 116/304 (38%), Gaps = 12/304 (3%)

Query: 236 SLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSL 295
              ++ L +N + +   +  A F +L  L L+ + ++   P     +  L+TL L  N L
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 296 LRGSLPD--FPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPT-SLA 352
               +P   F   S+L  L +S      +L     +L NL  L++   +L   I   + +
Sbjct: 93  --KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFS 149

Query: 353 KLTQLVYLDLSSNKFVG-PIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLR 411
            L  L  L L        P  +L     L  L L +  +  AI    ++ L  L  +++ 
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI-NAIRDYSFKRLYRLKVLEIS 208

Query: 412 NNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMS 471
           +     ++  +      L  L + +      +P  +      L  L+LS N +   I  S
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPIST-IEGS 266

Query: 472 IFE-LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTL 530
           +   L  L+ + L   +L   V+  A + L  L  L +S N LT            + TL
Sbjct: 267 MLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325

Query: 531 RLAS 534
            L S
Sbjct: 326 ILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  125 bits (315), Expect = 2e-30
 Identities = 77/338 (22%), Positives = 138/338 (40%), Gaps = 22/338 (6%)

Query: 456 TLDLSANRLEGPIPMSIFE-LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLT 514
            LDL  NR++  +    F    +L+ L L+ N +   V+  A   L NL  L L  N L 
Sbjct: 36  LLDLGKNRIKT-LNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNRLK 93

Query: 515 VNASGDSSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEIPNWVWEIGN 572
           +   G  +  S +  L ++  K+ ++ +   +    L +L++ DN +   I +  +  G 
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFS-GL 151

Query: 573 GGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPH----PPRNAVLVDYSN 628
             LE L L    L+S+    ++S L+ + VL L    +   I            +++ S+
Sbjct: 152 NSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISH 209

Query: 629 NSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCL 688
             +  ++  +    +N T   S++  ++T V    +    YL  L+LS N +S    + L
Sbjct: 210 WPYLDTMTPNCLYGLNLT-SLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268

Query: 689 IKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDL 748
            ++   L  + L G  L+      F G   L+ L+++ NQL         +   LE L L
Sbjct: 269 HELLR-LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327

Query: 749 GNNKIR-DTFPCWLKNISSLRVLVLRSNSFYGSITCRE 785
            +N +  D   C    +  +     R N      TC  
Sbjct: 328 DSNPLACD---C---RLLWVFRRRWRLNFNRQQPTCAT 359

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  115 bits (291), Expect = 2e-27
 Identities = 61/321 (19%), Positives = 120/321 (37%), Gaps = 32/321 (9%)

Query: 117 TEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSS-------SYSFGGPLK 169
             +P G+   T    L+L           + ++   L  L+L+          +F     
Sbjct: 24  VAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN 81

Query: 170 LENPNLS---------GLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSS 220
           L    L          G+   L+ L  L +    I    +        L   L+ L +  
Sbjct: 82  LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI--LLD-YMFQDL-YNLKSLEVGD 137

Query: 221 CYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETIL 280
             L    H + + L SL  + L++ +L+S   E L+    L  L L    +N     +  
Sbjct: 138 NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK 197

Query: 281 QVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLAR 340
           +++ L+ L++S    L    P+     +L +L +++ N + V   ++ +L  L  L+L+ 
Sbjct: 198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257

Query: 341 CNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMS-----KNLTHLDLSNNALPGAIS 395
             +S    + L +L +L  + L   +    +  +          L  L++S N L   + 
Sbjct: 258 NPISTIEGSMLHELLRLQEIQLVGGQ----LAVVEPYAFRGLNYLRVLNVSGNQL-TTLE 312

Query: 396 STDWEHLSNLVYVDLRNNALN 416
            + +  + NL  + L +N L 
Sbjct: 313 ESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 96.7 bits (241), Expect = 5e-21
 Identities = 69/374 (18%), Positives = 118/374 (31%), Gaps = 69/374 (18%)

Query: 601 TVLDLHSNQLQGNIPHP-PRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGV 659
             +  H  +    +P   P    L+D   N   + +  D   S        L+ N ++ V
Sbjct: 14  RAVLCHRKRFV-AVPEGIPTETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAV 71

Query: 660 IPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGL 719
            P        L  L L +N+L          +S+ L  L++  N +   L   F     L
Sbjct: 72  EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN-LTKLDISENKIVILLDYMFQDLYNL 130

Query: 720 QTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYG 779
           ++L++ +N L     ++ +    LE L L    +       L ++  L VL LR  +   
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN- 189

Query: 780 SITCRENDDSW---PMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFEL 836
           +I     D S+     L++++I+   +   +                             
Sbjct: 190 AI----RDYSFKRLYRLKVLEISHWPYLDTMT----------------------PNCLYG 223

Query: 837 LTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQN 896
           L                           TS+  +  N        +  L  L  LN S N
Sbjct: 224 LN-------------------------LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258

Query: 897 AFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQL 956
                  S +  L +L+ + L    L+   P     L +L VLN+S N          QL
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN----------QL 308

Query: 957 QSFSPTSFEGNEGL 970
            +   + F     L
Sbjct: 309 TTLEESVFHSVGNL 322

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 87.1 bits (216), Expect = 7e-18
 Identities = 60/372 (16%), Positives = 106/372 (28%), Gaps = 73/372 (19%)

Query: 575 LEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSS 634
              L+L  N + +L      +    +  L+L+ N +                      S+
Sbjct: 34  TRLLDLGKNRIKTLN-QDEFASFPHLEELELNENIV----------------------SA 70

Query: 635 IPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDI 694
           +     N++       L SN +  +          L  LD+S NK+   +      + + 
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN- 129

Query: 695 LGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIR 754
           L  L +  N L       F G   L+ L L +  L     ++L++   L VL L +  I 
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189

Query: 755 DTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITS 814
                  K +  L+VL +    +  ++T   N      L  + I   N            
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMT--PNCLYGLNLTSLSITHCNL----------- 236

Query: 815 WKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNF 874
                       +    +    L  +                          ++ S N  
Sbjct: 237 ------------TAVPYLAVRHLVYL------------------------RFLNLSYNPI 260

Query: 875 DGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLT 934
                  +  L  L  +           P     L  L  L++S N L+        ++ 
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320

Query: 935 FLSVLNLSHNNL 946
            L  L L  N L
Sbjct: 321 NLETLILDSNPL 332

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  133 bits (337), Expect = 8e-34
 Identities = 61/392 (15%), Positives = 126/392 (32%), Gaps = 40/392 (10%)

Query: 274 TFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNL 333
                +        + +   +       +    ++ + +    +    +    + + + +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 334 SRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVG-PIPSLHMSKNLTHLDLSNNALPG 392
             L+L    +      + A    +  L +  N     P         LT L L  N L  
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-S 130

Query: 393 AISSTDWEHLSNLVYVDLRNNALNGSIPRSLFS-IPMLQQLLLANNKFGGPIPEFSNASY 451
           ++    + +   L  + + NN L   I    F     LQ L L++N+    +     +  
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNR----LTHVDLSLI 185

Query: 452 SALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKL------------------NGTVQ 493
            +L   ++S N L      ++     ++ L  S N +                  N    
Sbjct: 186 PSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD 240

Query: 494 LAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPN-LKSQSKLFNL 552
            A +     L+ ++LSYN L            ++  L +++ +L  +    +    L  L
Sbjct: 241 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 300

Query: 553 DLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQG 612
           DLS N +   +     +     LE L L HN + +L+    +S  + +  L L  N    
Sbjct: 301 DLSHNHLL-HVERNQPQFDR--LENLYLDHNSIVTLK----LSTHHTLKNLTLSHNDWDC 353

Query: 613 N-IPHPPRNAVLVDYSNNSFTSSIPGDIGNSM 643
           N +    RN       +      I   + + +
Sbjct: 354 NSLRALFRNVARPAVDDADQHCKIDYQLEHGL 385

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  133 bits (337), Expect = 1e-33
 Identities = 76/353 (21%), Positives = 128/353 (36%), Gaps = 28/353 (7%)

Query: 213 LRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLN 272
              + +               L +  ++    + +       L  F  +  LNL+   + 
Sbjct: 23  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 82

Query: 273 GTFPETILQVHTLQTLDLSGNSLLRGSLPD--FPKNSSLRTLMLSYANFSGVLPDSIGNL 330
                     HT+Q L +  N++    LP   F     L  L+L   + S +      N 
Sbjct: 83  EIDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 140

Query: 331 KNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMS--KNLTHLDLSNN 388
             L+ L ++  NL      +    T L  L LSSN+    +  + +S   +L H ++S N
Sbjct: 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR----LTHVDLSLIPSLFHANVSYN 196

Query: 389 ALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSN 448
            L      +       +  +D  +N++N  +   +     L  L L +N          N
Sbjct: 197 LL------STLAIPIAVEELDASHNSIN-VVRGPVNV--ELTILKLQHNNL-TDTAWLLN 246

Query: 449 ASYSALDTLDLSANRLEGPIPMSIFE-LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLE 507
             Y  L  +DLS N LE  I    F  ++ L+ L +S+N+L         Q +  L  L+
Sbjct: 247 --YPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYISNNRL--VALNLYGQPIPTLKVLD 301

Query: 508 LSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQIS 560
           LS+N+L         F   +  L L    +  +  L +   L NL LS N   
Sbjct: 302 LSHNHLLHVERNQPQFDR-LENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  132 bits (334), Expect = 2e-33
 Identities = 71/429 (16%), Positives = 136/429 (31%), Gaps = 72/429 (16%)

Query: 302 DFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLD 361
           +   +     + +               L N   +      +       L    Q+  L+
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 75

Query: 362 LSSNKFVG-PIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIP 420
           L+  +       +   +  +  L +  NA+   +    ++++  L  + L  N L+ S+P
Sbjct: 76  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVLERNDLS-SLP 133

Query: 421 RSLFS-IPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLK 479
           R +F   P L  L ++NN     I + +  + ++L  L LS+NRL   + +S+    +L 
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTH-VDLSLI--PSLF 189

Query: 480 ILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKV 539
              +S N       L+ +     +  L+ S+N++            ++  L+L    L  
Sbjct: 190 HANVSYN------LLSTLAIPIAVEELDASHNSIN---VVRGPVNVELTILKLQHNNLTD 240

Query: 540 IPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNL 599
              L +   L  +DLS N++  +I    +      LE L +S+N L +L        +  
Sbjct: 241 TAWLLNYPGLVEVDLSYNELE-KIMYHPFV-KMQRLERLYISNNRLVAL--NLYGQPIPT 296

Query: 600 MTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGV 659
           + VLDL  N L                        +  +                     
Sbjct: 297 LKVLDLSHNHL----------------------LHVERN---------QPQFDR------ 319

Query: 660 IPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGL 719
                     L  L L +N +     +        L  L L  N            N   
Sbjct: 320 ----------LENLYLDHNSIVTLKLSTHHT----LKNLTLSHNDWDCNSLRALFRNVAR 365

Query: 720 QTLDLNENQ 728
             +D  +  
Sbjct: 366 PAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  127 bits (320), Expect = 1e-31
 Identities = 71/363 (19%), Positives = 139/363 (38%), Gaps = 26/363 (7%)

Query: 418 SIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFE-LK 476
            I  +L    +   + +           F + + +    +    + +   +P ++ +  +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFG-FEDITLNNQKIVTFKNSTMRK-LPAALLDSFR 69

Query: 477 NLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCK 536
            +++L L+  ++   +   A      + +L + +N +             +  L L    
Sbjct: 70  QVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 128

Query: 537 LKVIPN--LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSI 594
           L  +P     +  KL  L +S+N +   I +  ++     L+ L LS N L+ +     +
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQ-ATTSLQNLQLSSNRLTHV----DL 182

Query: 595 SDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSN 654
           S +  +   ++  N L   +  P     L D S+NS    + G +   +       L  N
Sbjct: 183 SLIPSLFHANVSYNLLS-TLAIPIAVEEL-DASHNSINV-VRGPVNVEL---TILKLQHN 236

Query: 655 SITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFP 714
           ++T      +     L+ +DLS N+L   M    +KM   L  L +  N L   L++   
Sbjct: 237 NLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR-LERLYISNNRLV-ALNLYGQ 292

Query: 715 GNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRS 774
               L+ LDL+ N L   V ++     +LE L L +N I  T    L    +L+ L L  
Sbjct: 293 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSH 348

Query: 775 NSF 777
           N +
Sbjct: 349 NDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  120 bits (302), Expect = 4e-29
 Identities = 70/411 (17%), Positives = 140/411 (34%), Gaps = 62/411 (15%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSG-LGNLTNLTHLNLSNAGF 139
            D+  +  +  +      ++L   + +    +     ++P+  L +   +  LNL++   
Sbjct: 24  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLND--- 78

Query: 140 AGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPG 199
                       ++  +D                  +        ++ LY+    I    
Sbjct: 79  -----------LQIEEID------------------TYAFAYAHTIQKLYMGFNAIRY-- 107

Query: 200 IEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFF 259
           +       ++ P L VL L    LS            L+ + +  N+L     +      
Sbjct: 108 LPP-HVFQNV-PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 165

Query: 260 NLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANF 319
           +L +L LSS+ L      +++   +L   ++S N      L       ++  L  S+ + 
Sbjct: 166 SLQNLQLSSNRLT-HVDLSLIP--SLFHANVSYN-----LLSTLAIPIAVEELDASHNSI 217

Query: 320 SGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVG-PIPSLHMSK 378
           + V          L+ L L   NL+      L     LV +DLS N+            +
Sbjct: 218 NVVRGPV---NVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272

Query: 379 NLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNK 438
            L  L +SNN L     +   + +  L  +DL +N L   + R+      L+ L L +N 
Sbjct: 273 RLERLYISNNRL--VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 329

Query: 439 FGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLN 489
               I     +++  L  L LS N  +     ++F  +N+    +     +
Sbjct: 330 ----IVTLKLSTHHTLKNLTLSHNDWDCNSLRALF--RNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  119 bits (301), Expect = 4e-29
 Identities = 79/395 (20%), Positives = 143/395 (36%), Gaps = 34/395 (8%)

Query: 119 IPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGL 178
           I S L        +++           +   +     +   +S        +     + L
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-------TMRKLP-AAL 64

Query: 179 LQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLS 238
           L +  ++  L L+ + I    I+   A +     ++ L +    +          +  L+
Sbjct: 65  LDSFRQVELLNLNDLQIEE--ID-TYAFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPLLT 120

Query: 239 VICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRG 298
           V+ L++NDLSS       +   LT+L++S++ L     +T     +LQ L LS N L   
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180

Query: 299 SLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLV 358
            L   P   SL    +SY   S     ++     +  LD +  +++  +   +    +L 
Sbjct: 181 DLSLIP---SLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELT 229

Query: 359 YLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGS 418
            L L  N        L     L  +DLS N L   I    +  +  L  + + NN L  +
Sbjct: 230 ILKLQHNNLT-DTAWLLNYPGLVEVDLSYNEL-EKIMYHPFVKMQRLERLYISNNRLV-A 286

Query: 419 IPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNL 478
           +      IP L+ L L++N     +       +  L+ L L  N +   + +S      L
Sbjct: 287 LNLYGQPIPTLKVLDLSHNHLLH-VERNQ-PQFDRLENLYLDHNSIV-TLKLSTH--HTL 341

Query: 479 KILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNL 513
           K L LS N  +     A     RN+ R  +   + 
Sbjct: 342 KNLTLSHNDWDCNSLRAL---FRNVARPAVDDADQ 373

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  102 bits (255), Expect = 3e-23
 Identities = 66/331 (19%), Positives = 110/331 (33%), Gaps = 50/331 (15%)

Query: 475 LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLAS 534
             ++ I M + +   G   +     L N   +    + +    +       QV  L L  
Sbjct: 23  FYDVHIDMQTQDVYFGFEDI----TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND 78

Query: 535 CKLKVIPN--LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPY 592
            +++ I          +  L +  N I   +P  V++     L  L L  N LSSL    
Sbjct: 79  LQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQ-NVPLLTVLVLERNDLSSLP-RG 135

Query: 593 SISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLS 652
              +   +T L + +N L                        I  D   +        LS
Sbjct: 136 IFHNTPKLTTLSMSNNNL----------------------ERIEDDTFQATTSLQNLQLS 173

Query: 653 SNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVT 712
           SN +T V    I     L   ++S N LS       + +   +  L+   NS++    V 
Sbjct: 174 SNRLTHVDLSLIPS---LFHANVSYNLLS------TLAIPIAVEELDASHNSIN---VVR 221

Query: 713 FPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVL 772
            P N  L  L L  N L  T    L N   L  +DL  N++          +  L  L +
Sbjct: 222 GPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279

Query: 773 RSNSFYGSITCREND-DSWPMLQIVDIASNN 802
            +N     +          P L+++D++ N+
Sbjct: 280 SNN----RLVALNLYGQPIPTLKVLDLSHNH 306

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 94.0 bits (234), Expect = 2e-20
 Identities = 64/436 (14%), Positives = 135/436 (30%), Gaps = 74/436 (16%)

Query: 542 NLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMT 601
           +   Q      D+  +  + ++     +I     + +   ++ +  L     +     + 
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP-AALLDSFRQVE 72

Query: 602 VLDLHSNQLQ---GNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITG 658
           +L+L+  Q++               +    N+    +P  +  ++       L  N ++ 
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLSS 131

Query: 659 VIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCG 718
           +          L  L +SNN L           +  L  L L  N L+    V       
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNLQLSSNRLT---HVDLSLIPS 187

Query: 719 LQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFY 778
           L   +++ N L      +LA    +E LD  +N I             L +L L+ N+  
Sbjct: 188 LFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNN-- 237

Query: 779 GSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLT 838
             +T      ++P L  VD++ N                                 +++ 
Sbjct: 238 --LTDTAWLLNYPGLVEVDLSYNELE------------------------------KIMY 265

Query: 839 DIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAF 898
             F +                 +     +  S N     +      + +L  L+ S N  
Sbjct: 266 HPFVK-----------------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL 307

Query: 899 GGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQS 958
              +        +LE+L L  N +     ++L+    L  L LSHN+ + N  +    ++
Sbjct: 308 LH-VERNQPQFDRLENLYLDHNSIVT---LKLSTHHTLKNLTLSHNDWDCN-SLRALFRN 362

Query: 959 FSPTSFEGNEGLCGAP 974
            +  + +  +  C   
Sbjct: 363 VARPAVDDADQHCKID 378

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  133 bits (335), Expect = 2e-32
 Identities = 76/353 (21%), Positives = 128/353 (36%), Gaps = 28/353 (7%)

Query: 213 LRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLN 272
              + +               L +  ++    + +       L  F  +  LNL+   + 
Sbjct: 29  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 88

Query: 273 GTFPETILQVHTLQTLDLSGNSLLRGSLPD--FPKNSSLRTLMLSYANFSGVLPDSIGNL 330
                     HT+Q L +  N++    LP   F     L  L+L   + S +      N 
Sbjct: 89  EIDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 146

Query: 331 KNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMS--KNLTHLDLSNN 388
             L+ L ++  NL      +    T L  L LSSN+    +  + +S   +L H ++S N
Sbjct: 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR----LTHVDLSLIPSLFHANVSYN 202

Query: 389 ALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSN 448
            L      +       +  +D  +N++N  +   +     L  L L +N          N
Sbjct: 203 LL------STLAIPIAVEELDASHNSIN-VVRGPVN--VELTILKLQHNNL-TDTAWLLN 252

Query: 449 ASYSALDTLDLSANRLEGPIPMSIFE-LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLE 507
             Y  L  +DLS N LE  I    F  ++ L+ L +S+N+L         Q +  L  L+
Sbjct: 253 --YPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYISNNRL--VALNLYGQPIPTLKVLD 307

Query: 508 LSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQIS 560
           LS+N+L         F   +  L L    +  +  L +   L NL LS N   
Sbjct: 308 LSHNHLLHVERNQPQFDR-LENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  131 bits (332), Expect = 5e-32
 Identities = 67/381 (17%), Positives = 127/381 (33%), Gaps = 36/381 (9%)

Query: 276 PETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSR 335
              +        + +   +       +    ++ + +    +    +    + + + +  
Sbjct: 20  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 79

Query: 336 LDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVG-PIPSLHMSKNLTHLDLSNNALPGAI 394
           L+L    +      + A    +  L +  N     P         LT L L  N L  ++
Sbjct: 80  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSL 138

Query: 395 SSTDWEHLSNLVYVDLRNNALNGSIPRSLFS-IPMLQQLLLANNKFGGPIPEFSNASYSA 453
               + +   L  + + NN L   I    F     LQ L L++N+    +     +   +
Sbjct: 139 PRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNR----LTHVDLSLIPS 193

Query: 454 LDTLDLSANRLEG-PIPMSIFEL---------------KNLKILMLSSNKLNGTVQLAAI 497
           L   ++S N L    IP+++ EL                 L IL L  N L      A +
Sbjct: 194 LFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT---DTAWL 250

Query: 498 QRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPN-LKSQSKLFNLDLSD 556
                L+ ++LSYN L            ++  L +++ +L  +    +    L  LDLS 
Sbjct: 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSH 310

Query: 557 NQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGN-IP 615
           N +   +     +     LE L L HN + +L+    +S  + +  L L  N    N + 
Sbjct: 311 NHLL-HVERNQPQFDR--LENLYLDHNSIVTLK----LSTHHTLKNLTLSHNDWDCNSLR 363

Query: 616 HPPRNAVLVDYSNNSFTSSIP 636
              RN       +      I 
Sbjct: 364 ALFRNVARPAVDDADQHCKID 384

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  120 bits (301), Expect = 4e-28
 Identities = 80/521 (15%), Positives = 166/521 (31%), Gaps = 69/521 (13%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSG-LGNLTNLTHLNLSNAGF 139
            D+  +  +  +      ++L   + +    +     ++P+  L +   +  LNL++   
Sbjct: 30  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLND--- 84

Query: 140 AGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPG 199
                       ++  +D                  +        ++ LY+    I    
Sbjct: 85  -----------LQIEEID------------------TYAFAYAHTIQKLYMGFNAIRY-- 113

Query: 200 IEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFF 259
           +       ++ P L VL L    LS            L+ + +  N+L     +      
Sbjct: 114 LPP-HVFQNV-PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171

Query: 260 NLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANF 319
           +L +L LSS+ L      +++   +L   ++S N      L       ++  L  S+ + 
Sbjct: 172 SLQNLQLSSNRLT-HVDLSLIP--SLFHANVSYN-----LLSTLAIPIAVEELDASHNSI 223

Query: 320 SGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVG-PIPSLHMSK 378
           + V          L+ L L   NL+      L     LV +DLS N+            +
Sbjct: 224 NVVRGPV---NVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278

Query: 379 NLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNK 438
            L  L +SNN L  A++    + +  L  +DL +N L   + R+      L+ L L +N 
Sbjct: 279 RLERLYISNNRL-VALNLY-GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 335

Query: 439 FGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIF-ELKNLKILMLSSNKLNGTVQLAAI 497
               I     +++  L  L LS N  +     ++F  +    +     +          +
Sbjct: 336 ----IVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGL 391

Query: 498 Q------RLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLK--SQSKL 549
                     + +   ++  ++           S   T+         I           
Sbjct: 392 CCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGN 451

Query: 550 FNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQR 590
             L+   N++  E+     E          L   + ++L+R
Sbjct: 452 EQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRR 492

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 91.1 bits (226), Expect = 5e-19
 Identities = 64/438 (14%), Positives = 132/438 (30%), Gaps = 74/438 (16%)

Query: 542 NLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMT 601
           +   Q      D+  +  + ++     +I     + +   ++ +  L     +     + 
Sbjct: 20  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP-AALLDSFRQVE 78

Query: 602 VLDLHSNQLQ---GNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITG 658
           +L+L+  Q++               +    N+    +P  +  ++       L  N ++ 
Sbjct: 79  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLSS 137

Query: 659 VIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCG 718
           +          L  L +SNN L           +  L  L L  N L+    V       
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNLQLSSNRLT---HVDLSLIPS 193

Query: 719 LQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFY 778
           L   +++ N L      +LA    +E LD  +N I             L +L L+ N+  
Sbjct: 194 LFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNN-- 243

Query: 779 GSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLT 838
             +T      ++P L  VD++ N                                F  + 
Sbjct: 244 --LTDTAWLLNYPGLVEVDLSYNEL-----------------------EKIMYHPFVKMQ 278

Query: 839 DIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAF 898
            +                          +  S N     +      + +L  L+ S N  
Sbjct: 279 RL------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL 313

Query: 899 GGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQS 958
              +        +LE+L L  N +     ++L+    L  L LSHN+ + N  +    ++
Sbjct: 314 LH-VERNQPQFDRLENLYLDHNSIVT---LKLSTHHTLKNLTLSHNDWDCN-SLRALFRN 368

Query: 959 FSPTSFEGNEGLCGAPLN 976
            +  + +  +  C     
Sbjct: 369 VARPAVDDADQHCKIDYQ 386

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 42/295 (14%), Positives = 86/295 (29%), Gaps = 27/295 (9%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFA 140
           L +S   +      +     +  L+ L+L+ N      +         L +L L +    
Sbjct: 283 LYISNNRLV---ALNLYGQPIPTLKVLDLSHNHL--LHVERNQPQFDRLENLYLDHNSIV 337

Query: 141 GQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGV----NIS 196
               +++S    L  L LS           +  +L  L +N+A       D         
Sbjct: 338 ---TLKLSTHHTLKNLTLSH-------NDWDCNSLRALFRNVARPAVDDADQHCKIDYQL 387

Query: 197 APGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLA 256
             G+   ++    + +L +  ++   +   +  +  +  +   I   Q+       +   
Sbjct: 388 EHGLCCKESDKPYLDRL-LQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGV 446

Query: 257 DFFNLTSLNLS----SSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTL 312
                  L        + +     E I Q   LQ L    ++ LR      PK+   R+ 
Sbjct: 447 PLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLR--RYRLPKDGLARSS 504

Query: 313 MLSYANFSGVLPDSIGNL-KNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNK 366
                 F+ +       L +  +R   A      +       +     LD    K
Sbjct: 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAK 559

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  127 bits (322), Expect = 3e-32
 Identities = 67/330 (20%), Positives = 114/330 (34%), Gaps = 41/330 (12%)

Query: 123 LGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNL 182
             + +   +L    +         +S   R    D +  +S        NP +    +  
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI--ETRTG 65

Query: 183 AELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICL 242
             L+A         A  +E         P    L L S  L         +L  L  + +
Sbjct: 66  RALKAT--------ADLLEDAT-----QPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTI 111

Query: 243 DQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPD 302
           D   L   +P+ +  F  L +L L+ + L    P +I  ++ L+ L +     L   LP+
Sbjct: 112 DAAGLME-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT-ELPE 168

Query: 303 ----------FPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLA 352
                          +L++L L +      LP SI NL+NL  L +    LS ++  ++ 
Sbjct: 169 PLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIH 226

Query: 353 KLTQLVYLDLSSNKFVGPIP-SLHMSKNLTHLDLSNN----ALPGAISSTDWEHLSNLVY 407
            L +L  LDL     +   P        L  L L +      LP  I       L+ L  
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-----LTQLEK 281

Query: 408 VDLRNNALNGSIPRSLFSIPMLQQLLLANN 437
           +DLR       +P  +  +P    +L+  +
Sbjct: 282 LDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  123 bits (310), Expect = 9e-31
 Identities = 57/372 (15%), Positives = 103/372 (27%), Gaps = 70/372 (18%)

Query: 321 GVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNL 380
           G       +      L              L++  +    D +         + +   N 
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN---NP 58

Query: 381 THLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFG 440
                +  AL       +       V ++LR+  L    P   F +  LQ + +      
Sbjct: 59  QIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM 117

Query: 441 GPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNK--------LNGTV 492
                      + L+TL L+ N L   +P SI  L  L+ L + +          L  T 
Sbjct: 118 ELPDTMQQF--AGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 493 QLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNL 552
                Q L NL  L L +  +        S P+ +  L                  L +L
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIR-------SLPASIANL----------------QNLKSL 211

Query: 553 DLSDNQISGEIPNWVWEIGN-GGLEYLNLSH-NLLSSLQRPYSISDLNLMTVLDL-HSNQ 609
            + ++ +S  +      I +   LE L+L     L +   P        +  L L   + 
Sbjct: 212 KIRNSPLS-ALGP---AIHHLPKLEELDLRGCTALRNY--PPIFGGRAPLKRLILKDCSN 265

Query: 610 LQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKY 669
           L                       ++P DI           L        +P  I +   
Sbjct: 266 L----------------------LTLPLDIHRLTQLEK-LDLRGCVNLSRLPSLIAQLPA 302

Query: 670 LLVLDLSNNKLS 681
             ++ +  +  +
Sbjct: 303 NCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  120 bits (304), Expect = 7e-30
 Identities = 68/414 (16%), Positives = 116/414 (28%), Gaps = 114/414 (27%)

Query: 213 LRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLN 272
              L         P H  L++ Q       ++               N  +  + +    
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNR-------WHSAWRQANSNNPQIETRTGR 66

Query: 273 G--TFPETI--LQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIG 328
                 + +          L+L    L                            PD   
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPL-------------------------PQFPDQAF 101

Query: 329 NLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNN 388
            L +L  + +    L   +P ++ +   L  L L+ N                       
Sbjct: 102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-------------------- 140

Query: 389 ALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSN 448
           ALP +I+      L+ L  + +R       +P  L S     +     N           
Sbjct: 141 ALPASIA-----SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN----------- 184

Query: 449 ASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLEL 508
                L +L L    +   +P SI  L+NLK L + ++ L  +    AI  L  L  L+L
Sbjct: 185 -----LQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPL--SALGPAIHHLPKLEELDL 236

Query: 509 SYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPN-LKSQSKLFNLDLSD-NQISGEIPNW 566
                                       L+  P     ++ L  L L D + +   +P  
Sbjct: 237 RGCT-----------------------ALRNYPPIFGGRAPLKRLILKDCSNLL-TLPL- 271

Query: 567 VWEIGN-GGLEYLNLSHNL-LSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPP 618
             +I     LE L+L   + LS L  P  I+ L    ++ +  +       H P
Sbjct: 272 --DIHRLTQLEKLDLRGCVNLSRL--PSLIAQLPANCIILVPPHLQAQLDQHRP 321

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  115 bits (290), Expect = 4e-28
 Identities = 55/303 (18%), Positives = 96/303 (31%), Gaps = 32/303 (10%)

Query: 100 SLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIP-IQVSAMTRLVTLDL 158
            L   Q    A    N         N  N      +          ++ +     V L+L
Sbjct: 31  VLSQWQRHYNADR--NRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALEL 88

Query: 159 SSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSL 218
            S         L           L+ L+ + +D   +     E    +      L  L+L
Sbjct: 89  RSV-------PLPQ--FPDQAFRLSHLQHMTIDAAGLM----ELPDTMQQF-AGLETLTL 134

Query: 219 SSCYLSGPIHPSLAKLQSLSVICL-DQNDLSS--------PVPEFLADFFNLTSLNLSSS 269
           +   L   +  S+A L  L  + +    +L+                   NL SL L  +
Sbjct: 135 ARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT 193

Query: 270 GLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKN-SSLRTLMLSYANFSGVLPDSIG 328
           G+  + P +I  +  L++L +  + L   +L     +   L  L L         P   G
Sbjct: 194 GIR-SLPASIANLQNLKSLKIRNSPLS--ALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250

Query: 329 NLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIP-SLHMSKNLTHLDLSN 387
               L RL L  C+   ++P  + +LTQL  LDL     +  +P  +        + +  
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310

Query: 388 NAL 390
           +  
Sbjct: 311 HLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  107 bits (269), Expect = 2e-25
 Identities = 59/338 (17%), Positives = 111/338 (32%), Gaps = 52/338 (15%)

Query: 452 SALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYN 511
           S  + L    +    P    + + +       +                 N      +  
Sbjct: 12  SGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS-----AWRQANSNNPQIETRTGR 66

Query: 512 NLT--VNASGDSSFPSQVRTLRLASCKLKVIPN-LKSQSKLFNLDLSDNQISGEIPNWVW 568
            L    +   D++ P     L L S  L   P+     S L ++ +    +  E+P+   
Sbjct: 67  ALKATADLLEDATQPG-RVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPD--- 121

Query: 569 EIGN-GGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYS 627
            +    GLE L L+ N L +L  P SI+ LN +  L +                      
Sbjct: 122 TMQQFAGLETLTLARNPLRAL--PASIASLNRLRELSI---------------------R 158

Query: 628 NNSFTSSIPGDIGNSMNFTIF--------FSLSSNSITGVIPETICRAKYLLVLDLSNNK 679
                + +P  + ++                L    I   +P +I   + L  L + N+ 
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP 217

Query: 680 LSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNC-GLQTLDL-NENQLGGTVPKSL 737
           LS  +   +  +   L  L+LRG +        F G    L+ L L + + L  T+P  +
Sbjct: 218 LS-ALGPAIHHLPK-LEELDLRGCTALRNYPPIF-GGRAPLKRLILKDCSNLL-TLPLDI 273

Query: 738 ANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSN 775
               +LE LDL         P  +  + +  ++++  +
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 97.3 bits (243), Expect = 5e-22
 Identities = 50/265 (18%), Positives = 86/265 (32%), Gaps = 30/265 (11%)

Query: 99  LSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDL 158
            +     +L L        + P     L++L H+ +  AG   ++P  +     L TL L
Sbjct: 78  ATQPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTL 134

Query: 159 SSSYSFGGPLKLENPNLSGL---LQNLAELRALYLDGVNISA---PGIEWCQALSSLV-- 210
           + +             L  L   + +L  LR L +            +    A       
Sbjct: 135 ARN------------PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182

Query: 211 PKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSG 270
             L+ L L    +   +  S+A LQ+L  + +  + LS+ +   +     L  L+L    
Sbjct: 183 VNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCT 240

Query: 271 LNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKN-SSLRTLMLSYANFSGVLPDSIGN 329
               +P        L+ L L   S L  +LP      + L  L L        LP  I  
Sbjct: 241 ALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

Query: 330 LKNLSRLDL---ARCNLSGSIPTSL 351
           L     + +    +  L    P + 
Sbjct: 300 LPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 90.0 bits (224), Expect = 1e-19
 Identities = 37/295 (12%), Positives = 79/295 (26%), Gaps = 53/295 (17%)

Query: 497 IQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLR-LASCKLKVIPNLKSQSKLFNLDLS 555
                    L    +           +   +   +   +       +   Q+   N  + 
Sbjct: 8   HHHSSGRENLYFQGSTAL------RPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE 61

Query: 556 DNQISG--EIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGN 613
                      + + +    G   L L    L     P     L+ +  + + +  L   
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLPQF--PDQAFRLSHLQHMTIDAAGLM-- 117

Query: 614 IPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVL 673
                                +P  +          +L+ N +   +P +I     L  L
Sbjct: 118 --------------------ELPDTMQQFAGLETL-TLARNPLR-ALPASIASLNRLREL 155

Query: 674 DLSNNKLSGKMPTCLIKMSDI--------LGVLNLRGNSLSGTLSVTFPGNCG----LQT 721
            +       ++P  L              L  L L    +      + P +      L++
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-----SLPASIANLQNLKS 210

Query: 722 LDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNS 776
           L +  + L   +  ++ +  KLE LDL        +P      + L+ L+L+  S
Sbjct: 211 LKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 57.3 bits (139), Expect = 9e-09
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 3/92 (3%)

Query: 865 TSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSD 924
             +D          P   G    L  L     +    +P  I  L QLE LDL       
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 925 QIPIQLANLTFLSVLNLSHN---NLEGNIPVS 953
           ++P  +A L    ++ +  +    L+ + PV+
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQAQLDQHRPVA 323

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 865 TSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSD 924
            +++          P++  RL  L  +          +P T+     LE+L L+ N L  
Sbjct: 84  VALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLR- 140

Query: 925 QIPIQLANLTFLSVLNLSHNNLEGNIP 951
            +P  +A+L  L  L++        +P
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELP 167

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.3 bits (134), Expect = 4e-08
 Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 1/68 (1%)

Query: 878 IPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLS 937
           +P  I  L++L  L    +     +   I +L +LE LDL         P        L 
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256

Query: 938 VLNLSHNN 945
            L L   +
Sbjct: 257 RLILKDCS 264

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 16/128 (12%), Positives = 37/128 (28%), Gaps = 8/128 (6%)

Query: 651 LSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLS 710
              ++      + + + +     D +    + +        S+   +    G +L  T  
Sbjct: 19  FQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN-----SNNPQIETRTGRALKATAD 73

Query: 711 VTFPGN-CGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRV 769
           +       G   L+L    L    P        L+ + +    +    P  ++  + L  
Sbjct: 74  LLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLET 131

Query: 770 LVLRSNSF 777
           L L  N  
Sbjct: 132 LTLARNPL 139

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.0 bits (115), Expect = 8e-06
 Identities = 11/72 (15%), Positives = 20/72 (27%), Gaps = 4/72 (5%)

Query: 878 IPEKIGRLKS--LYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTF 935
             + +          L           P     L  L+ + +    L  ++P  +     
Sbjct: 71  TADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAG 128

Query: 936 LSVLNLSHNNLE 947
           L  L L+ N L 
Sbjct: 129 LETLTLARNPLR 140

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.0 bits (115), Expect = 8e-06
 Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 11/92 (11%)

Query: 865 TSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSD 924
             +          +P+ + +   L  L  ++N     +P++I +L +L  L +       
Sbjct: 107 QHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELT 164

Query: 925 QIPIQLANLTF---------LSVLNLSHNNLE 947
           ++P  LA+            L  L L    + 
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.9 bits (99), Expect = 8e-04
 Identities = 13/104 (12%), Positives = 30/104 (28%), Gaps = 22/104 (21%)

Query: 865 TSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPI-------------------PST 905
            ++ F  +    P  + + + +  Y  + ++                             
Sbjct: 15  ENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADL 74

Query: 906 IGNLQQ--LESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLE 947
           + +  Q    +L+L    L  Q P Q   L+ L  + +    L 
Sbjct: 75  LEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM 117

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  131 bits (331), Expect = 8e-32
 Identities = 76/395 (19%), Positives = 130/395 (32%), Gaps = 73/395 (18%)

Query: 285 LQTLDLSGNSLLRGSLPD-FPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNL 343
              L++  + L   +LPD  P +  + TL++   N    LP     L+ L   +++   L
Sbjct: 42  NAVLNVGESGL--TTLPDCLPAH--ITTLVIPD-NNLTSLPALPPELRTL---EVSGNQL 93

Query: 344 SGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLS 403
           + S+P     L +L             +P+L     L  L +  N L     ++      
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLTH----LPALP--SGLCKLWIFGNQL-----TSLPVLPP 141

Query: 404 NLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANR 463
            L  + + +N L  S+P        L +L   NN+    +P       S L  L +S N+
Sbjct: 142 GLQELSVSDNQLA-SLPAL---PSELCKLWAYNNQLTS-LPM----LPSGLQELSVSDNQ 192

Query: 464 LEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSF 523
           L   +P    EL  L      +N+L     L A+     L  L +S N LT       S 
Sbjct: 193 LAS-LPTLPSELYKLWAY---NNRLT---SLPAL--PSGLKELIVSGNRLT-------SL 236

Query: 524 PSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHN 583
           P     L+                    L +S N+++  +P          L  L++  N
Sbjct: 237 PVLPSELK-------------------ELMVSGNRLT-SLPM---LPSG--LLSLSVYRN 271

Query: 584 LLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSM 643
            L+ L  P S+  L+  T ++L  N L        R        +               
Sbjct: 272 QLTRL--PESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPR 329

Query: 644 NFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNN 678
                   +++ +          A    +    +N
Sbjct: 330 ETRALHLAAADWLVPAREGEPAPADRWHMFGQEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  120 bits (303), Expect = 3e-28
 Identities = 76/381 (19%), Positives = 129/381 (33%), Gaps = 96/381 (25%)

Query: 402 LSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSA 461
            +    +++  + L  ++P  L +   +  L++ +N     +P         L TL++S 
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPAH--ITTLVIPDNNLTS-LPA----LPPELRTLEVSG 90

Query: 462 NRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDS 521
           N+L   +P+    L  L I       L              L +L +  N LT       
Sbjct: 91  NQLTS-LPVLPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIFGNQLT------- 134

Query: 522 SFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLS 581
           S P                P L+       L +SDNQ++  +P          L  L   
Sbjct: 135 SLPVL-------------PPGLQE------LSVSDNQLA-SLPALP-----SELCKLWAY 169

Query: 582 HNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGN 641
           +N L+SL  P   S L     L +  NQL                      +S+P     
Sbjct: 170 NNQLTSL--PMLPSGL---QELSVSDNQL----------------------ASLPTLPSE 202

Query: 642 SMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLR 701
                      +N +T  +P        L  L +S N+L+  +P    +    L  L + 
Sbjct: 203 LYKLW----AYNNRLT-SLPALPSG---LKELIVSGNRLTS-LPVLPSE----LKELMVS 249

Query: 702 GNSLSGTLSVTFPGNCG-LQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCW 760
           GN L+     + P     L +L +  NQL   +P+SL +      ++L  N + +     
Sbjct: 250 GNRLT-----SLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 303

Query: 761 LKNISSLRVLVLRSNSFYGSI 781
           L+ I+S          F  + 
Sbjct: 304 LREITSAPGYSGPIIRFDMAG 324

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  115 bits (289), Expect = 1e-26
 Identities = 77/425 (18%), Positives = 142/425 (33%), Gaps = 92/425 (21%)

Query: 352 AKLTQLVYLDLSSNKFVGPIPSL--HMSKNLTHLDLSNN---ALPGAISSTDWEHLSNLV 406
                   L++  +     + +L   +  ++T L + +N   +LP             L 
Sbjct: 37  CLNNGNAVLNVGESG----LTTLPDCLPAHITTLVIPDNNLTSLP--------ALPPELR 84

Query: 407 YVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEG 466
            +++  N L  S+P     +  L                   A  S L  L +  N+L  
Sbjct: 85  TLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHL--------PALPSGLCKLWIFGNQLTS 135

Query: 467 PIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFP-- 524
            +P+       L+ L +S N+L     L A+     L +L    N LT       S P  
Sbjct: 136 -LPV---LPPGLQELSVSDNQLA---SLPAL--PSELCKLWAYNNQLT-------SLPML 179

Query: 525 -SQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHN 583
            S ++ L ++  +L  +P L S+  L+ L   +N+++  +P          L+ L +S N
Sbjct: 180 PSGLQELSVSDNQLASLPTLPSE--LYKLWAYNNRLT-SLPA---LPSG--LKELIVSGN 231

Query: 584 LLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSM 643
            L+SL  P   S+L     L +  N+L                       S+P       
Sbjct: 232 RLTSL--PVLPSEL---KELMVSGNRLT----------------------SLPMLPSG-- 262

Query: 644 NFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGN 703
              +  S+  N +T  +PE++        ++L  N LS +     ++    +        
Sbjct: 263 --LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQALRE---ITSAPGYSG 315

Query: 704 SLSGTLSVTFPGNCGLQTLDL-NENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLK 762
            +              + L L   + L        A   +  +    +N   D F  +L 
Sbjct: 316 PIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNA--DAFSLFLD 373

Query: 763 NISSL 767
            +S  
Sbjct: 374 RLSET 378

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  109 bits (273), Expect = 1e-24
 Identities = 81/418 (19%), Positives = 137/418 (32%), Gaps = 75/418 (17%)

Query: 126 LTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAEL 185
                 LN+  +G    +P  +     + TL +  +            NL+ L     EL
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDN------------NLTSLPALPPEL 83

Query: 186 RALYLDGVNISA-PGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQ 244
           R L + G  +++ P          L+ +L + S    +L        + L  L    +  
Sbjct: 84  RTLEVSGNQLTSLP-----VLPPGLL-ELSIFSNPLTHLP----ALPSGLCKLW---IFG 130

Query: 245 NDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFP 304
           N L+S +P        L  L++S + L  + P    +   L  L    N L   SLP  P
Sbjct: 131 NQLTS-LPVLPP---GLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQL--TSLPMLP 180

Query: 305 KNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSS 364
             S L+ L +S    +  LP     L  L   +    N   S+P   + L +   L +S 
Sbjct: 181 --SGLQELSVSDNQLA-SLPTLPSELYKLWAYN----NRLTSLPALPSGLKE---LIVSG 230

Query: 365 NKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDW-EHLSNLVYVDLRNNALNGSIPRSL 423
           N+    +P L     L  L +S N L      T      S L+ + +  N L   +P SL
Sbjct: 231 NRLTS-LPVLP--SELKELMVSGNRL------TSLPMLPSGLLSLSVYRNQLT-RLPESL 280

Query: 424 FSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRL------EGPIPMSIFELKN 477
             +     + L  N    P+ E +  +   + +    +  +          P     L  
Sbjct: 281 IHLSSETTVNLEGN----PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHL 336

Query: 478 LKILMLSSNKLNGTVQLAAIQRLRNLIRLE-----LSYNNLTVNASGDSSFPSQVRTL 530
                L   +                   +     L   + T N   D+ F +Q+ + 
Sbjct: 337 AAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSW 394

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  107 bits (269), Expect = 4e-24
 Identities = 74/372 (19%), Positives = 130/372 (34%), Gaps = 64/372 (17%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFA 140
           L++ E  ++     + P     ++ +L +  N  N T +P+    L     L +S     
Sbjct: 45  LNVGESGLT-----TLPDCLPAHITTLVIPDN--NLTSLPALPPELRT---LEVSGNQLT 94

Query: 141 GQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGI 200
             +P+    +  L       +            +L  L   L +   L++ G  ++    
Sbjct: 95  -SLPVLPPGLLELSIFSNPLT------------HLPALPSGLCK---LWIFGNQLT---- 134

Query: 201 EWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFN 260
               +L  L P L+ LS+S   L+  +    ++L  L       N L+S +P        
Sbjct: 135 ----SLPVLPPGLQELSVSDNQLAS-LPALPSELCKLW---AYNNQLTS-LPM---LPSG 182

Query: 261 LTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFS 320
           L  L++S + L  + P    +   L  L    N L   SLP  P  S L+ L++S  N  
Sbjct: 183 LQELSVSDNQLA-SLPTLPSE---LYKLWAYNNRL--TSLPALP--SGLKELIVSG-NRL 233

Query: 321 GVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNL 380
             LP     LK    L ++   L+ S+P      + L+ L +  N+      SL    + 
Sbjct: 234 TSLPVLPSELKE---LMVSGNRLT-SLPML---PSGLLSLSVYRNQLTRLPESLIHLSSE 286

Query: 381 THLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALN--GSIPRSLFSIPMLQQLLLANNK 438
           T ++L  N L    S    + L  +      +  +        S         L  A+  
Sbjct: 287 TTVNLEGNPL----SERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL 342

Query: 439 FGGPIPEFSNAS 450
                 E + A 
Sbjct: 343 VPAREGEPAPAD 354

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  101 bits (254), Expect = 3e-22
 Identities = 65/300 (21%), Positives = 108/300 (36%), Gaps = 62/300 (20%)

Query: 499 RLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQ 558
                  L +  + LT   +     P+ + TL +    L  +P L  +  L  L++S NQ
Sbjct: 38  LNNGNAVLNVGESGLT---TLPDCLPAHITTLVIPDNNLTSLPALPPE--LRTLEVSGNQ 92

Query: 559 ISGEIPNWVWEIGN------------------GGLEYLNLSHNLLSSLQRPYSISDLNLM 600
           ++  +P                           GL  L +  N L+SL  P     L   
Sbjct: 93  LT-SLPV---LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSL--PVLPPGL--- 143

Query: 601 TVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGN--SMNFTIFFSLSSNSITG 658
             L +  NQL  ++P  P     +   NN  T S+P        ++      +S N +  
Sbjct: 144 QELSVSDNQLA-SLPALPSELCKLWAYNNQLT-SLPMLPSGLQELS------VSDNQLA- 194

Query: 659 VIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCG 718
            +P        L  L   NN+L     T L  +   L  L + GN L+     + P    
Sbjct: 195 SLPTLPSE---LYKLWAYNNRL-----TSLPALPSGLKELIVSGNRLT-----SLPVLPS 241

Query: 719 -LQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSF 777
            L+ L ++ N+L  ++P   +    L  L +  N++    P  L ++SS   + L  N  
Sbjct: 242 ELKELMVSGNRL-TSLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.1 bits (143), Expect = 5e-09
 Identities = 45/265 (16%), Positives = 85/265 (32%), Gaps = 62/265 (23%)

Query: 695 LGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIR 754
             VLN+  + L+ TL    P +  + TL + +N L  ++P        L  L++  N++ 
Sbjct: 42  NAVLNVGESGLT-TLPDCLPAH--ITTLVIPDNNLT-SLPALPPE---LRTLEVSGNQLT 94

Query: 755 DTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITS 814
            + P     +  L +            +          L  + I  N     +P      
Sbjct: 95  -SLPVLPPGLLELSIFSNPLTHLPALPSG---------LCKLWIFGNQLT-SLP-VLPPG 142

Query: 815 WKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNF 874
            + +             V    L                   L  + S    +    N  
Sbjct: 143 LQEL------------SVSDNQLA-----------------SLPALPSELCKLWAYNNQL 173

Query: 875 DGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLT 934
              +P     L+ L   + S N     +P+    L +L + +   N L+  +P   + L 
Sbjct: 174 TS-LPMLPSGLQEL---SVSDNQLAS-LPTLPSELYKLWAYN---NRLT-SLPALPSGLK 224

Query: 935 FLSVLNLSHNNLEGNIPVS-TQLQS 958
               L +S N L  ++PV  ++L+ 
Sbjct: 225 ---ELIVSGNRLT-SLPVLPSELKE 245

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.1 bits (135), Expect = 4e-08
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 18/115 (15%)

Query: 664 ICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCG-LQTL 722
            C      VL++  + L+  +P CL      +  L +  N+L+     + P     L+TL
Sbjct: 36  ACLNNGNAVLNVGESGLT-TLPDCLPA---HITTLVIPDNNLT-----SLPALPPELRTL 86

Query: 723 DLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSF 777
           +++ NQL  ++P       +L +       +           S L  L +  N  
Sbjct: 87  EVSGNQL-TSLPVLPPGLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQL 133

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 8/76 (10%)

Query: 872 NNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLA 931
            N    +P     LK    L  S N     +P     L    SL +  N L+ ++P  L 
Sbjct: 230 GNRLTSLPVLPSELKE---LMVSGNRLTS-LPMLPSGLL---SLSVYRNQLT-RLPESLI 281

Query: 932 NLTFLSVLNLSHNNLE 947
           +L+  + +NL  N L 
Sbjct: 282 HLSSETTVNLEGNPLS 297

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  129 bits (327), Expect = 1e-31
 Identities = 91/525 (17%), Positives = 191/525 (36%), Gaps = 52/525 (9%)

Query: 260 NLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANF 319
           +   ++ S +GL    P+ + Q      L++S N +                        
Sbjct: 1   SEFLVDRSKNGLI-HVPKDLSQ--KTTILNISQNYI------------------------ 33

Query: 320 SGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKN 379
           S +    I +L  L  L ++   +     +      +L YLDLS NK V  I       N
Sbjct: 34  SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCHPT-VN 91

Query: 380 LTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKF 439
           L HLDLS NA        ++ ++S L ++ L    L  S    +  + + + LL+    +
Sbjct: 92  LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY 151

Query: 440 GGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQR 499
                +         +T  L            I ++    +  L  + +   ++      
Sbjct: 152 ---GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208

Query: 500 LRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQI 559
             +++    +   L+     +                   I  L   + ++   +S+ ++
Sbjct: 209 FLSILAKLQTNPKLSNLTLNNIETTWN---------SFIRILQLVWHTTVWYFSISNVKL 259

Query: 560 SGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSI--SDLNLMTVLDLHSNQLQG---NI 614
            G++    ++     L+ L++   +      P S      + M + +   +  +      
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319

Query: 615 PHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGV--IPETICRAKYLLV 672
           P      + +D+SNN  T ++  + G+         L  N +  +  I E   + K L  
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELET-LILQMNQLKELSKIAEMTTQMKSLQQ 378

Query: 673 LDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGT 732
           LD+S N +S          +  L  LN+  N L+ T+    P    ++ LDL+ N++  +
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDLHSNKI-KS 435

Query: 733 VPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSF 777
           +PK +     L+ L++ +N+++         ++SL+ + L +N +
Sbjct: 436 IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  115 bits (290), Expect = 5e-27
 Identities = 80/446 (17%), Positives = 159/446 (35%), Gaps = 52/446 (11%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSN---- 136
           LDLS   +               L+ L+L+FN F+A  I    GN++ L  L LS     
Sbjct: 74  LDLSHNKLV-----KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128

Query: 137 -AGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNI 195
            +       + +S +  ++           G       +L  +     E   +    +++
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFI----LDV 184

Query: 196 SAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFL 255
           S   +   + LS++   L     S          +  KL +L++  ++    S      L
Sbjct: 185 SVKTVANLE-LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL 243

Query: 256 ADFFNLTSLNLSSSGLNG-----TFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLR 310
                +   ++S+  L G      F  +   +  L    +  +         +   S++ 
Sbjct: 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN 303

Query: 311 TLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKF--V 368
               + +    V       +     LD +   L+ ++  +   LT+L  L L  N+   +
Sbjct: 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL 363

Query: 369 GPIPSL-HMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIP 427
             I  +    K+L  LD+S N++       D     +L+ +++ +N L  +I R L    
Sbjct: 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--- 420

Query: 428 MLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNK 487
                                     +  LDL +N+++  IP  + +L+ L+ L ++SN+
Sbjct: 421 ------------------------PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQ 455

Query: 488 LNGTVQLAAIQRLRNLIRLELSYNNL 513
           L  +V      RL +L ++ L  N  
Sbjct: 456 LK-SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  108 bits (270), Expect = 2e-24
 Identities = 84/481 (17%), Positives = 165/481 (34%), Gaps = 52/481 (10%)

Query: 104 LQSLNLAFNMFNATEIPSG-LGNLTNLTHLNLSNAGFAGQIPIQV-SAMTRLVTLDLS-- 159
              LN++ N    +E+ +  + +L+ L  L +S+      + I V      L  LDLS  
Sbjct: 23  TTILNISQN--YISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHN 79

Query: 160 --SSYSFGGPLKLENPNLS----------GLLQNLAELRALYLDGVNISAPGIEWCQALS 207
                S    + L++ +LS              N+++L+ L L   ++    +     ++
Sbjct: 80  KLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSV---LPIA 136

Query: 208 SLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLS 267
            L     +L L   Y           LQ  +   L     ++    F+ D    T  NL 
Sbjct: 137 HLNISKVLLVLGETYGE---KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 268 SSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSI 327
            S +     +            L  N  L         N +L  +  ++ +F  +L   +
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLS--------NLTLNNIETTWNSFIRIL--QL 243

Query: 328 GNLKNLSRLDLARCNLSGSIPTSLA-----KLTQLVYLDLSSNKFVGPIPSLHMS-KNLT 381
                +    ++   L G +           L  L    + S+ F  P   ++    N+ 
Sbjct: 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN 303

Query: 382 HLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGG 441
             + + +     +       +S  +++D  NN L  ++  +   +  L+ L+L  N+   
Sbjct: 304 IKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE 362

Query: 442 PIPEFSNA--SYSALDTLDLSANRLEGPIPMSIFE-LKNLKILMLSSNKLNGTVQLAAIQ 498
            + + +       +L  LD+S N +            K+L  L +SSN L          
Sbjct: 363 -LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT---DTIFRC 418

Query: 499 RLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSD 556
               +  L+L  N +             ++ L +AS +LK +P+      + L  + L  
Sbjct: 419 LPPRIKVLDLHSNKIKSIPKQVVKLE-ALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477

Query: 557 N 557
           N
Sbjct: 478 N 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  105 bits (263), Expect = 1e-23
 Identities = 82/477 (17%), Positives = 156/477 (32%), Gaps = 52/477 (10%)

Query: 211 PKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSG 270
            KLR+L +S   +           Q L  + L  N L            NL  L+LS + 
Sbjct: 45  SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTV---NLKHLDLSFNA 101

Query: 271 LNG-TFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGN 329
            +     +    +  L+ L LS   L + S+      +  + L++    +     +    
Sbjct: 102 FDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY--GEKEDPEG 159

Query: 330 LKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNA 389
           L++ +   L     +      +  ++     +L  +            K +   +  +  
Sbjct: 160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI----------KCVLEDNKCSYF 209

Query: 390 LPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPI----PE 445
           L           LSNL   ++     +      L     +    ++N K  G +     +
Sbjct: 210 LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFD 269

Query: 446 FSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIR 505
           +S  S  AL    + ++    P         N+ I   + +     V +    ++   + 
Sbjct: 270 YSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLH 328

Query: 506 LELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNL----KSQSKLFNLDLSDNQISG 561
           L+ S N LT     +    +++ TL L   +LK +  +         L  LD+S N +S 
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388

Query: 562 EIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNA 621
           +            L  LN+S N+L+     +      +  VLDLHSN+++          
Sbjct: 389 DEKKGDCS-WTKSLLSLNMSSNILTDT--IFRCLPPRI-KVLDLHSNKIK---------- 434

Query: 622 VLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNN 678
                       SIP  +          +++SN +  V      R   L  + L  N
Sbjct: 435 ------------SIPKQVVKLEALQE-LNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 78.4 bits (193), Expect = 5e-15
 Identities = 78/455 (17%), Positives = 160/455 (35%), Gaps = 28/455 (6%)

Query: 501 RNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQ 558
           +    L +S N ++   + D    S++R L ++  +++ +     K   +L  LDLS N+
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 559 ISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQ----GNI 614
           +     +         L++L+LS N   +L       +++ +  L L +  L+      I
Sbjct: 81  LVKISCHPT-----VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 615 PHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLD 674
            H   + VL+           P  + +    ++     +N     I +     K +  L+
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILD--VSVKTVANLE 193

Query: 675 LSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVP 734
           LSN K   +   C   +S +  +      S     ++    N  ++ L L        V 
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL--------VW 245

Query: 735 KSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQ 794
            +      +  + L        F     ++ +L +  + S+ F    +      S   ++
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305

Query: 795 IVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWK--G 852
              ++       +    I+ +  +    +       +     LT++    +     K   
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKELS 364

Query: 853 REMELVKILSIFTSIDFSRNNF-DGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQ 911
           +  E+   +     +D S+N+             KSL  LN S N     I   +    +
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPR 422

Query: 912 LESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNL 946
           ++ LDL  N +   IP Q+  L  L  LN++ N L
Sbjct: 423 IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL 456

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 71.0 bits (174), Expect = 9e-13
 Identities = 73/451 (16%), Positives = 141/451 (31%), Gaps = 69/451 (15%)

Query: 506 LELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEI 563
           ++ S N L            +   L ++   +  +    + S SKL  L +S N+I   +
Sbjct: 5   VDRSKNGLI---HVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YL 60

Query: 564 PNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVL 623
              V++  N  LEYL+LSHN L  +    S      +  LDL  N               
Sbjct: 61  DISVFK-FNQELEYLDLSHNKLVKI----SCHPTVNLKHLDLSFNAFD------------ 103

Query: 624 VDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGK 683
                     ++P           F ++S                 L  L LS   L   
Sbjct: 104 ----------ALPIC-------KEFGNMSQ----------------LKFLGLSTTHLEKS 130

Query: 684 MPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKL 743
               +  ++    +L L                    T  L+           + +    
Sbjct: 131 SVLPIAHLNISKVLLVLGETYGEKEDPEGL---QDFNTESLHIVFPTNKEFHFILDVSVK 187

Query: 744 EVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWP-MLQIVDIASNN 802
            V +L  + I+        +     +  L++N    ++T    + +W   ++I+ +  + 
Sbjct: 188 TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247

Query: 803 FGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILS 862
                    +           +      D     L  +    VV+  +   +  + +I S
Sbjct: 248 TVWYFSISNVKLQG-------QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS 300

Query: 863 IFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHL 922
                +F+ +           ++     L+FS N     +    G+L +LE+L L MN L
Sbjct: 301 NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360

Query: 923 S--DQIPIQLANLTFLSVLNLSHNNLEGNIP 951
               +I      +  L  L++S N++  +  
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  120 bits (303), Expect = 6e-29
 Identities = 77/411 (18%), Positives = 145/411 (35%), Gaps = 60/411 (14%)

Query: 371 IPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLF-SIPML 429
           +P L    ++ ++DLS N++   ++ T +  L +L ++ +        I  + F  +  L
Sbjct: 25  VPEL--PAHVNYVDLSLNSI-AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL 81

Query: 430 QQLLLANNKFGGPIPEFSNASYSALDTLDLSANRL-EGPIPMSIFE-LKNLKILMLSSNK 487
             L L  N+F   +   +    + L+ L L+   L    +  + F+ L +L++L+L  N 
Sbjct: 82  IILKLDYNQFLQ-LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140

Query: 488 LNGTVQLAAIQRLRNLIRLELSYNNLTVNASG--DSSFPSQVRTLRLASCKLKVIPNLKS 545
           +      +    +R    L+L++N +         +        LRL+S  L        
Sbjct: 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITL-------- 192

Query: 546 QSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDL 605
                  D+++  +  E     +   N  +  L+LS N             +    +  L
Sbjct: 193 ------QDMNEYWLGWEKCGNPF--KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244

Query: 606 HSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETIC 665
             +                D  N +F        G   +      LS + I   + +++ 
Sbjct: 245 ILSNSYNMGSSFGHTN-FKDPDNFTFK-------GLEASGVKTCDLSKSKIF-ALLKSVF 295

Query: 666 RA-KYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDL 724
                L  L L+ N+++                       +       F G   L  L+L
Sbjct: 296 SHFTDLEQLTLAQNEIN----------------------KIDDN---AFWGLTHLLKLNL 330

Query: 725 NENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSN 775
           ++N LG    +   N  KLEVLDL  N IR         + +L+ L L +N
Sbjct: 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  117 bits (294), Expect = 7e-28
 Identities = 75/419 (17%), Positives = 139/419 (33%), Gaps = 68/419 (16%)

Query: 284 TLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLP-DSIGNLKNLSRLDLARCN 342
            +  +DLS NS+   +   F +   L+ L +       V+  ++   L +L  L L    
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 343 LSGSIPTS-LAKLTQLVYLDLSSNKFVG---PIPSLHMSKNLTHLDLSNNALPGAISSTD 398
               + T     L  L  L L+     G            +L  L L +N +     ++ 
Sbjct: 91  FL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 399 WEHLSNLVYVDLRNNALNGSIPRSLF---SIPMLQQLLLANNKFGGPIPEFSNASYSALD 455
           + ++     +DL  N +  SI               L L++                   
Sbjct: 150 FLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSIT----------------- 191

Query: 456 TLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRN--LIRLELSYNNL 513
             D++   L      + F+  ++  L LS N    ++       +    +  L LS +  
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251

Query: 514 TVNASGDSSF------------PSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQI 559
             ++ G ++F             S V+T  L+  K+  +        + L  L L+ N+I
Sbjct: 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311

Query: 560 SGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPR 619
           + +I +  +  G   L  LNLS N L S+       +L+ + VLDL  N ++        
Sbjct: 312 N-KIDDNAFW-GLTHLLKLNLSQNFLGSID-SRMFENLDKLEVLDLSYNHIR-------- 360

Query: 620 NAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNN 678
                         ++       +      +L +N +  V      R   L  + L  N
Sbjct: 361 --------------ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  111 bits (279), Expect = 7e-26
 Identities = 81/434 (18%), Positives = 150/434 (34%), Gaps = 73/434 (16%)

Query: 332 NLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPS--LHMSKNLTHLDLSNNA 389
           +++ +DL+  +++    TS ++L  L +L +        I +       +L  L L  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 390 LPGAISSTDWEHLSNLVYVDLRNNALNGS-IPRSLFS-IPMLQQLLLANNKFGGPIPEFS 447
               + +  +  L+NL  + L    L+G+ +  + F  +  L+ L+L +N      P   
Sbjct: 91  F-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 448 NASYSALDTLDLSANRLEGPIPMSIF---ELKNLKILMLSSNKLN-------GTVQLAAI 497
             +      LDL+ N+++  I        + K+  +L LSS  L        G  +    
Sbjct: 150 FLNMRRFHVLDLTFNKVKS-ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 498 QRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDN 557
            +  ++  L+LS N      S    F   +   ++ S  L    N+ S            
Sbjct: 209 FKNTSITTLDLSGNGFK--ESMAKRFFDAIAGTKIQSLILSNSYNMGS-------SFGHT 259

Query: 558 QISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHP 617
                       +   G++  +LS + + +L      S    +  L L  N++       
Sbjct: 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALL-KSVFSHFTDLEQLTLAQNEIN------ 312

Query: 618 PRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSN 677
                            I  +         F+ L+                 LL L+LS 
Sbjct: 313 ----------------KIDDN--------AFWGLTH----------------LLKLNLSQ 332

Query: 678 NKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSL 737
           N L   + + + +  D L VL+L  N +      +F G   L+ L L+ NQL        
Sbjct: 333 NFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391

Query: 738 ANCRKLEVLDLGNN 751
                L+ + L  N
Sbjct: 392 DRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  109 bits (273), Expect = 4e-25
 Identities = 91/437 (20%), Positives = 159/437 (36%), Gaps = 68/437 (15%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFA 140
           +DLS  SI+  ++ +S    L+ LQ L +           +    L++L  L L    F 
Sbjct: 35  VDLSLNSIA-ELNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL 92

Query: 141 GQIPIQV-SAMTRLVTLDLSSSYSFGGPLKLENPNL-SGLLQNLAELRALYLDGVNISAP 198
            Q+     + +  L  L L+          L+   L     + L  L  L L   NI   
Sbjct: 93  -QLETGAFNGLANLEVLTLTQC-------NLDGAVLSGNFFKPLTSLEMLVLRDNNI--- 141

Query: 199 GIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADF 258
                     + P                      ++   V+ L  N + S + E   D 
Sbjct: 142 --------KKIQP----------------ASFFLNMRRFHVLDLTFNKVKS-ICE--EDL 174

Query: 259 FNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYAN 318
            N    +            T+L++ ++   D++   L      +  KN+S+ TL LS   
Sbjct: 175 LNFQGKHF-----------TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223

Query: 319 FSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSK 378
           F   +     +    +++     + S ++ +S        + D  +  F G   S     
Sbjct: 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSS---FGHTNFKDPDNFTFKGLEAS----- 275

Query: 379 NLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLF-SIPMLQQLLLANN 437
            +   DLS + +  A+  + + H ++L  + L  N +N  I  + F  +  L +L L+ N
Sbjct: 276 GVKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQN 333

Query: 438 KFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFE-LKNLKILMLSSNKLNGTVQLAA 496
             G  I      +   L+ LDLS N +   +    F  L NLK L L +N+L  +V    
Sbjct: 334 FLGS-IDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLK-SVPDGI 390

Query: 497 IQRLRNLIRLELSYNNL 513
             RL +L ++ L  N  
Sbjct: 391 FDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 74.4 bits (183), Expect = 6e-14
 Identities = 68/378 (17%), Positives = 111/378 (29%), Gaps = 50/378 (13%)

Query: 624 VDYSNNSFTS--SIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLS 681
               N        +P           +  LS NSI  +   +  R + L  L +      
Sbjct: 15  AICINRGLHQVPELPAH-------VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG 67

Query: 682 GKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTV--PKSLAN 739
             +     +    L +L L  N      +  F G   L+ L L +  L G V        
Sbjct: 68  LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP 127

Query: 740 CRKLEVLDLGNNKIRDTFP-CWLKNISSLRVLVLRSN--------SFYGSITCRENDDSW 790
              LE+L L +N I+   P  +  N+    VL L  N                       
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187

Query: 791 PMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTW 850
             + + D+     G    +KC   +K       +   N          +   +       
Sbjct: 188 SSITLQDMNEYWLGW---EKCGNPFKNTSITTLDLSGN-------GFKESMAKRFFDAIA 237

Query: 851 KGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLK--SLYGLNFSQNAFGGPIPSTI-G 907
             +   L+   S      F   NF  P       L+   +   + S++     +  ++  
Sbjct: 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA-LLKSVFS 296

Query: 908 NLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVST------------- 954
           +   LE L L+ N ++         LT L  LNLS N L G+I                 
Sbjct: 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLS 355

Query: 955 --QLQSFSPTSFEGNEGL 970
              +++    SF G   L
Sbjct: 356 YNHIRALGDQSFLGLPNL 373

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.6 bits (142), Expect = 6e-09
 Identities = 81/442 (18%), Positives = 139/442 (31%), Gaps = 82/442 (18%)

Query: 534 SCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYS 593
           +  L  +P L +      +DLS N I+ E+    +      L++L +       + R  +
Sbjct: 19  NRGLHQVPELPAHVN--YVDLSLNSIA-ELNETSFS-RLQDLQFLKVEQQTPGLVIRNNT 74

Query: 594 ISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSS 653
              L+ + +L L  NQ                         +            F  L++
Sbjct: 75  FRGLSSLIILKLDYNQFL----------------------QLETGA--------FNGLAN 104

Query: 654 NSITGVIPETICRAKYLLVLDLSNNKLSGKM--PTCLIKMSDILGVLNLRGNSLSG-TLS 710
                           L VL L+   L G +        ++  L +L LR N++     +
Sbjct: 105 ----------------LEVLTLTQCNLDGAVLSGNFFKPLTS-LEMLVLRDNNIKKIQPA 147

Query: 711 VTFPGNCGLQTLDLNENQLGGTVPKSLANCRK--LEVLDLGNNKIRDTFPCWLKNI---- 764
             F        LDL  N++     + L N +     +L L +  ++D    WL       
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207

Query: 765 ----SSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAM-- 818
               +S+  L L  N F      +   D+    +I  +  +N          T++K    
Sbjct: 208 PFKNTSITTLDLSGNGF-KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266

Query: 819 MSDEDEAQSNFKDVH------FELLTDIFYQDVVTVTWKGREMELVKI-------LSIFT 865
            + +    S  K         F LL  +F            + E+ KI       L+   
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326

Query: 866 SIDFSRNNFDGPIPEKI-GRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSD 924
            ++ S+N     I  ++   L  L  L+ S N        +   L  L+ L L  N L  
Sbjct: 327 KLNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385

Query: 925 QIPIQLANLTFLSVLNLSHNNL 946
                   LT L  + L  N  
Sbjct: 386 VPDGIFDRLTSLQKIWLHTNPW 407

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  120 bits (303), Expect = 2e-28
 Identities = 91/500 (18%), Positives = 174/500 (34%), Gaps = 34/500 (6%)

Query: 287 TLDLSGNSLLRGSLP-DFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSG 345
            +D S  +L    +P D P     + L LS  + S +    I  L  L  L L+   +  
Sbjct: 35  MVDYSNRNL--THVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR- 89

Query: 346 SIPTSL-AKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSN 404
           S+   +      L YLD+S N+    I       +L HLDLS N         ++ +L+ 
Sbjct: 90  SLDFHVFLFNQDLEYLDVSHNRLQN-ISC-CPMASLRHLDLSFNDFDVLPVCKEFGNLTK 147

Query: 405 LVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRL 464
           L ++ L        +     +   L  +LL    +     E  +        L L  +  
Sbjct: 148 LTFLGLSAAKFR-QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN 206

Query: 465 EGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFP 524
                     +  L  L LS+ KLN       +    + +    +  N+T+         
Sbjct: 207 SLFSVQVNMSVNALGHLQLSNIKLN-DENCQRLMTFLSELTRGPTLLNVTLQ-------- 257

Query: 525 SQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNL 584
                +         +        +  L++ +  I+  I    +      L+ L + H  
Sbjct: 258 ----HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVK 313

Query: 585 LSSLQRPYSI--SDLNLMTVLDLHSNQLQGNIPHPPR---NAVLVDYSNNSFTSSIPGDI 639
                       S    M +  L  +         P    +   ++++ N FT S+    
Sbjct: 314 NQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGC 373

Query: 640 GNSMNFTIFFSLSSNSITGV--IPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGV 697
                      L  N +     +         L  LD+S N L+          ++ + V
Sbjct: 374 STLKRLQTL-ILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432

Query: 698 LNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTF 757
           LNL  N L+G++    P    ++ LDL+ N++  ++PK + + + L+ L++ +N+++   
Sbjct: 433 LNLSSNMLTGSVFRCLPPK--VKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKSVP 489

Query: 758 PCWLKNISSLRVLVLRSNSF 777
                 ++SL+ + L  N +
Sbjct: 490 DGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  103 bits (257), Expect = 8e-23
 Identities = 78/425 (18%), Positives = 145/425 (34%), Gaps = 41/425 (9%)

Query: 97  PLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTL 156
               +  L+ L+L+FN F+   +    GNLT LT L LS A F  Q+ +   A   L  +
Sbjct: 116 SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCI 174

Query: 157 DLS------SSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLV 210
            L                      L  +    +         VN +   ++      +  
Sbjct: 175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN-ALGHLQLSNIKLNDE 233

Query: 211 PKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSG 270
              R+++  S    GP   ++  LQ +         L         ++ N+ +L ++   
Sbjct: 234 NCQRLMTFLSELTRGPTLLNVT-LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERI 292

Query: 271 LNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNL 330
               F  +   + +L    +     L      +   + +   MLS ++   +      + 
Sbjct: 293 DREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSP 352

Query: 331 KNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFV---GPIPSLHMSKNLTHLDLSN 387
            + + L+  +   + S+    + L +L  L L  N                +L  LD+S 
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412

Query: 388 NALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFS 447
           N+L             +++ ++L +N L GS+ R L                        
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP----------------------- 449

Query: 448 NASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLE 507
                 +  LDL  NR+   IP  +  L+ L+ L ++SN+L  +V      RL +L  + 
Sbjct: 450 ----PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIW 503

Query: 508 LSYNN 512
           L  N 
Sbjct: 504 LHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 91.1 bits (226), Expect = 5e-19
 Identities = 90/457 (19%), Positives = 158/457 (34%), Gaps = 42/457 (9%)

Query: 176 SGLLQNLAELRALYLDGVNISAPGIEWCQALSSLV----PKLRVLSLSSCYLSGPIHPSL 231
              +  L+ELR L L    I        ++L   V      L  L +S   L    + S 
Sbjct: 69  MPDISFLSELRVLRLSHNRI--------RSLDFHVFLFNQDLEYLDVSHNRLQ---NISC 117

Query: 232 AKLQSLSVICLDQNDLSS-PVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQ-TLD 289
             + SL  + L  ND    PV +   +   LT L LS++         +  +H     LD
Sbjct: 118 CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLD 177

Query: 290 LSGNSLLRGSLPDFP--KNSSLRTLMLSYANFSGVLPDSIGNLKNLS----RLDLARCNL 343
           L    +  G          + L  +    + FS  +  S+  L +L     +L+   C  
Sbjct: 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR 237

Query: 344 SGSIPTSLAKLTQLVYLDLSSNKFVGP----IPSLHMSKNLTHLDLSNNALPGAISSTDW 399
             +  + L +   L+ + L   +        +      + + +L++ N  +   I   ++
Sbjct: 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297

Query: 400 EH----LSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALD 455
            +    L +L+   ++N     S          +   +L+ +            S S+  
Sbjct: 298 TYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP-SPSSFT 356

Query: 456 TLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTV 515
            L+ + N     +      LK L+ L+L  N L       A    +N+  LE    +L  
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVA-LMTKNMSSLETLDVSLNS 414

Query: 516 NASGDSSF----PSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIG 571
             S            +  L L+S  L          K+  LDL +N+I   IP  V  + 
Sbjct: 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQ 473

Query: 572 NGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSN 608
              L+ LN++ N L S+        L  +  + LH N
Sbjct: 474 A--LQELNVASNQLKSVPDG-VFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 89.5 bits (222), Expect = 1e-18
 Identities = 92/465 (19%), Positives = 167/465 (35%), Gaps = 38/465 (8%)

Query: 100 SLKYLQSLNLAFNMFNATEIPSGL-GNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDL 158
            L  L+ L L+ N      +   +     +L +L++S+        I    M  L  LDL
Sbjct: 74  FLSELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDVSHNRLQN---ISCCPMASLRHLDL 128

Query: 159 SSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSL 218
           S +         +   +     NL +L  L L         +     ++ L     +L L
Sbjct: 129 SFN-------DFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL---LPVAHLHLSCILLDL 178

Query: 219 SSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPET 278
            S ++ G    SL    +  +  +   +    V   ++    L  L LS+  LN    + 
Sbjct: 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMS-VNALGHLQLSNIKLNDENCQR 237

Query: 279 ILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDL 338
           +    T  +    G +LL  +L            +  +     V   +I NL    R+D 
Sbjct: 238 L---MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDR 294

Query: 339 ARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMS-KNLTHLDLSNNALPGAISST 397
                      S   L  L+   + +  F+    +L+     +    LS +  P  I   
Sbjct: 295 E------EFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMV 347

Query: 398 DWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGG-PIPEFSNASYSALDT 456
                S+  +++   N    S+ +   ++  LQ L+L  N             + S+L+T
Sbjct: 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET 407

Query: 457 LDLSANRLE-GPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRL-RNLIRLELSYNNLT 514
           LD+S N L       +    +++ +L LSSN L G+V     + L   +  L+L  N + 
Sbjct: 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF----RCLPPKVKVLDLHNNRIM 463

Query: 515 VNASGDSSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDN 557
                 +     ++ L +AS +LK +P+      + L  + L DN
Sbjct: 464 SIPKDVTHLQ-ALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 85.3 bits (211), Expect = 3e-17
 Identities = 74/402 (18%), Positives = 139/402 (34%), Gaps = 32/402 (7%)

Query: 230 SLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLD 289
            L++L+ L    L  N + S          +L  L++S + L        +   +L+ LD
Sbjct: 74  FLSELRVLR---LSHNRIRSLDFHVFLFNQDLEYLDVSHNRL-QNISCCPMA--SLRHLD 127

Query: 290 LSGNSLLRGSLPD---FPKNSSLRTLMLSYANFSGVLPDSIGNLK-NLSRLDLARCNLSG 345
           LS N      LP    F   + L  L LS A F  +    + +L  +   LDL   ++ G
Sbjct: 128 LSFNDFD--VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKG 185

Query: 346 SIPTSLAKL-TQLVYLDLSSNKFVGPIPSLHMS----KNLTHLDLSNNALPGAISSTDW- 399
               SL    T +++L    N       ++ ++      L+++ L++      ++     
Sbjct: 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSEL 245

Query: 400 EHLSNLVYVDLRNNALNGSIPRSLFSI---PMLQQLLLANNKFGGPI----PEFSNASYS 452
                L+ V L++          LF       ++ L + N      I      +S  +  
Sbjct: 246 TRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALK 305

Query: 453 ALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNN 512
           +L    +                  + I MLS +     + +       +   L  + N 
Sbjct: 306 SLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNFTQNV 364

Query: 513 LTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQ-SKLFNLDLSDNQISG--EIPNWVWE 569
            T +     S   +++TL L    LK    +      + +L+  D  ++           
Sbjct: 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424

Query: 570 IGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQ 611
                +  LNLS N+L+          +    VLDLH+N++ 
Sbjct: 425 AWAESILVLNLSSNMLTGSVFRCLPPKV---KVLDLHNNRIM 463

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 78.0 bits (192), Expect = 7e-15
 Identities = 75/419 (17%), Positives = 151/419 (36%), Gaps = 41/419 (9%)

Query: 421 RSLFSIP-----MLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFE- 474
           R+L  +P       + L L+ N     +     +  S L  L LS NR+   +   +F  
Sbjct: 41  RNLTHVPKDLPPRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRS-LDFHVFLF 98

Query: 475 LKNLKILMLSSNKLNGTVQLAAI--QRLRNLIRLELSYNNL-TVNASGDSSFPSQVRTLR 531
            ++L+ L +S N      +L  I    + +L  L+LS+N+   +    +    +++  L 
Sbjct: 99  NQDLEYLDVSHN------RLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLG 152

Query: 532 LASCKLKVIPNLKSQS---KLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSL 588
           L++ K + +  L           LDL    I G       +I N  + +L    N L S+
Sbjct: 153 LSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETE-SLQIPNTTVLHLVFHPNSLFSV 211

Query: 589 QRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIF 648
           Q   S++ L  + + ++  N           + +    +  + T     +     +  +F
Sbjct: 212 QVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ-HIETTWKCSVKLF 270

Query: 649 ----------FSLSSNSITGVIPETICRA-----KYLLVLDLSNNKLSGKMPTCLIKMSD 693
                      ++ + +IT  I            K L++  + N              ++
Sbjct: 271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE 330

Query: 694 ILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKI 753
            + +  L  +       V  P       L+  +N    +V +  +  ++L+ L L  N +
Sbjct: 331 -MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389

Query: 754 R--DTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQK 810
           +         KN+SSL  L +  NS   S            + +++++SN   G V + 
Sbjct: 390 KNFFKVALMTKNMSSLETLDVSLNSL-NSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 70.7 bits (173), Expect = 1e-12
 Identities = 87/489 (17%), Positives = 155/489 (31%), Gaps = 75/489 (15%)

Query: 477 NLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCK 536
             K L LS N ++  +++  I  L  L  L LS+N +         F   +  L ++  +
Sbjct: 53  RTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 537 LKVIP--NLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSI 594
           L+ I    + S   L +LDLS N     +P          L +L LS      L     +
Sbjct: 112 LQNISCCPMAS---LRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLD-LLPV 166

Query: 595 SDLNLMTV-LDLHSNQLQGNIPHPPRNAVL----VDYSNNSFTSSIPGDIGNSMNFTIFF 649
           + L+L  + LDL S  ++G      +        + +  NS  S       N++      
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226

Query: 650 SLSSNSITGVIPET----ICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGV--LNLRGN 703
           ++  N        T    + R   LL + L + + + K    L +      V  LN+   
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286

Query: 704 SLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLAN-----CRKLEVLDLGNNKIRDTFP 758
           +++  +              L    +   V             ++ +  L  +       
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346

Query: 759 CWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAM 818
               + SS   L    N F  + +  +   +   LQ + +  N                 
Sbjct: 347 VCPPSPSSFTFLNFTQNVF--TDSVFQGCSTLKRLQTLILQRNGL--------------- 389

Query: 819 MSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNF-DGP 877
                    NF  V                            +S   ++D S N+     
Sbjct: 390 --------KNFFKVALMTKN----------------------MSSLETLDVSLNSLNSHA 419

Query: 878 IPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLS 937
                   +S+  LN S N   G +   +    +++ LDL  N +   IP  + +L  L 
Sbjct: 420 YDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQ 476

Query: 938 VLNLSHNNL 946
            LN++ N L
Sbjct: 477 ELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.0 bits (135), Expect = 4e-08
 Identities = 62/380 (16%), Positives = 113/380 (29%), Gaps = 50/380 (13%)

Query: 575 LEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSS 634
            + L+LS N +S L+    IS L+ + VL L  N+++                      S
Sbjct: 54  TKALSLSQNSISELR-MPDISFLSELRVLRLSHNRIR----------------------S 90

Query: 635 IPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLI--KMS 692
           +   +        +  +S N +  +   + C    L  LDLS N     +P C     ++
Sbjct: 91  LDFHVFLFNQDLEYLDVSHNRLQNI---SCCPMASLRHLDLSFNDFD-VLPVCKEFGNLT 146

Query: 693 DILGVLNLRGNSLSGTLSVTFPGNCGLQT----LDLNENQLGGTVPKSLANCRKLEVLDL 748
             L  L L          +       L      LDL    + G   +SL       VL L
Sbjct: 147 K-LTFLGLSAAKFR---QLDLLPVAHLHLSCILLDLVSYHIKGGETESL-QIPNTTVLHL 201

Query: 749 GNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVP 808
             +           ++++L  L L +         R       + +   + +        
Sbjct: 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL----- 256

Query: 809 QKCITSWKAMMSDEDEAQ-SNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSI 867
           Q   T+WK  +           + ++   LT     D    T+    ++ + I  +    
Sbjct: 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV---- 312

Query: 868 DFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIP 927
                 F             +     S +           +      L+ + N  +D + 
Sbjct: 313 --KNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVF 370

Query: 928 IQLANLTFLSVLNLSHNNLE 947
              + L  L  L L  N L+
Sbjct: 371 QGCSTLKRLQTLILQRNGLK 390

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  119 bits (299), Expect = 2e-28
 Identities = 78/417 (18%), Positives = 151/417 (36%), Gaps = 54/417 (12%)

Query: 260 NLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANF 319
           N  S   ++  +  T   +  Q+ TL +LD   +S+    +    K + L  L+ +  N 
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT--DMTGIEKLTGLTKLICTSNNI 76

Query: 320 SGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKN 379
           + +    +    NL+ L      L+ ++   +  LT+L YL+  +NK    +        
Sbjct: 77  TTL---DLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKL-TKLDVSQN-PL 128

Query: 380 LTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKF 439
           LT+L+ + N     ++  D  H + L  +D   N     +   +     L  L  + NK 
Sbjct: 129 LTYLNCARN----TLTEIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK- 181

Query: 440 GGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQR 499
              I E   +    L+ L+   N +     + + +   L  L  SSNKL   + +  + +
Sbjct: 182 ---ITELDVSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLT-EIDVTPLTQ 234

Query: 500 LR------------------NLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIP 541
           L                    L  L     +L      D +  +Q+   +   C+     
Sbjct: 235 LTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLL---EIDLTHNTQLIYFQAEGCRKIKEL 291

Query: 542 NLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMT 601
           ++   ++L+ LD     I+ E+        N  L YL L++  L+ L     +S    + 
Sbjct: 292 DVTHNTQLYLLDCQAAGIT-ELDLS----QNPKLVYLYLNNTELTEL----DVSHNTKLK 342

Query: 602 VLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITG 658
            L   +  +Q         A+  ++     T ++P +   + + TI  S       G
Sbjct: 343 SLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  114 bits (287), Expect = 7e-27
 Identities = 73/423 (17%), Positives = 131/423 (30%), Gaps = 67/423 (15%)

Query: 331 KNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNAL 390
            N +    A   +  +   S  +L  L  LD  ++     +  +     LT L  ++N  
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD-MTGIEKLTGLTKLICTSN-- 74

Query: 391 PGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNAS 450
              I++ D    +NL Y+   +N L  ++   +  +  L  L    NK    + +   + 
Sbjct: 75  --NITTLDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNK----LTKLDVSQ 125

Query: 451 YSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSY 510
              L  L+ + N L     + +     L  L    NK         +     L  L+ S+
Sbjct: 126 NPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKI---TKLDVTPQTQLTTLDCSF 179

Query: 511 NNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEI 570
           N +T     D S    +  L   +  +  +  L    +L  LD S N+++ EI       
Sbjct: 180 NKIT---ELDVSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLT-EID----VT 230

Query: 571 GNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNS 630
               L Y + S N L+ L     +S L+ +T L      L                    
Sbjct: 231 PLTQLTYFDCSVNPLTEL----DVSTLSKLTTLHCIQTDL-------------------- 266

Query: 631 FTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIK 690
               I        + T      +     +    +     L +LD     ++    +   K
Sbjct: 267 --LEIDLT-----HNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK 319

Query: 691 MSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGN 750
               L  L L    L+  L V+      L++L      +      S+     L       
Sbjct: 320 ----LVYLYLNNTELT-ELDVSHNTK--LKSLSCVNAHI--QDFSSVGKIPALNNNFEAE 370

Query: 751 NKI 753
            + 
Sbjct: 371 GQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  105 bits (265), Expect = 5e-24
 Identities = 86/510 (16%), Positives = 164/510 (32%), Gaps = 86/510 (16%)

Query: 128 NLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGL--LQNLAEL 185
           N      +         I    +  L +LD  +S            +++ +  ++ L  L
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNS------------SITDMTGIEKLTGL 66

Query: 186 RALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQN 245
             L     NI+   +       S    L  L+  S  L+   +  +  L  L+ +  D N
Sbjct: 67  TKLICTSNNITTLDL-------SQNTNLTYLACDSNKLT---NLDVTPLTKLTYLNCDTN 116

Query: 246 DLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPK 305
            L+      ++    LT LN + + L       +     L  LD   N  +  +  D   
Sbjct: 117 KLTKLD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKI--TKLDVTP 168

Query: 306 NSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSN 365
            + L TL  S+   + +    +   K L+RL+    N++  +   L +  QL +LD SSN
Sbjct: 169 QTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSN 222

Query: 366 KFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFS 425
           K             LT +D++               L+ L Y D   N L   +  S   
Sbjct: 223 K-------------LTEIDVTP--------------LTQLTYFDCSVNPLT-ELDVSTL- 253

Query: 426 IPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSS 485
              L  L          + E      + L        R    + ++      L +L   +
Sbjct: 254 -SKLTTLHCIQTD----LLEIDLTHNTQLIYFQAEGCRKIKELDVT--HNTQLYLLDCQA 306

Query: 486 NKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKS 545
             +        + +   L+ L L+   LT     D S  +++++L   +  ++   ++  
Sbjct: 307 AGITE----LDLSQNPKLVYLYLNNTELT---ELDVSHNTKLKSLSCVNAHIQDFSSVGK 359

Query: 546 QSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDL 605
              L N   ++ Q          E        + +S +LL     P +I   +       
Sbjct: 360 IPALNNNFEAEGQTITMPK----ETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQA 415

Query: 606 HSNQLQGNIPHPPRNAVLVDYSNNSFTSSI 635
            +     N+      AV   +++ +     
Sbjct: 416 TNTITWENLSTDN-PAVTYTFTSENGAIVG 444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 90.1 bits (224), Expect = 6e-19
 Identities = 68/345 (19%), Positives = 113/345 (32%), Gaps = 53/345 (15%)

Query: 97  PLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTL 156
            L     L  L    N    T +   +  LT LT+LN           + VS    L  L
Sbjct: 80  DLSQNTNLTYLACDSNKL--TNLD--VTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYL 132

Query: 157 DLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVL 216
           + + +        L   ++S    +  +L  L                 ++    +L  L
Sbjct: 133 NCARN-------TLTEIDVS----HNTQLTELDCHLNKKITKL-----DVTPQ-TQLTTL 175

Query: 217 SLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFP 276
             S   ++      +++ + L+ +  D N+++      L     LT L+ SS+ L     
Sbjct: 176 DCSFNKIT---ELDVSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLT-EID 228

Query: 277 ETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRL 336
            T L    L   D S N L   +  D    S L TL     +   +    + +   L   
Sbjct: 229 VTPLT--QLTYFDCSVNPL---TELDVSTLSKLTTLHCIQTDLLEI---DLTHNTQLIYF 280

Query: 337 DLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSK--NLTHLDLSNNALPGAI 394
               C     +   +   TQL  LD  +      I  L +S+   L +L L+N  L    
Sbjct: 281 QAEGCRKIKELD--VTHNTQLYLLDCQAAG----ITELDLSQNPKLVYLYLNNTEL---- 330

Query: 395 SSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKF 439
           +  D  H + L  +   N  +      S+  IP L     A  + 
Sbjct: 331 TELDVSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 77.8 bits (192), Expect = 6e-15
 Identities = 44/268 (16%), Positives = 93/268 (34%), Gaps = 25/268 (9%)

Query: 502 NLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISG 561
           N      +   +    +      + + +L   +  +  +  ++  + L  L  + N I+ 
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNIT- 77

Query: 562 EIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNA 621
            +        N  L YL    N L++L     ++ L  +T L+  +N+L           
Sbjct: 78  TLDLS----QNTNLTYLACDSNKLTNL----DVTPLTKLTYLNCDTNKLTKLDVSQNPLL 129

Query: 622 VLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLS 681
             ++ + N+ T     D+ ++   T       N     +   +     L  LD S NK++
Sbjct: 130 TYLNCARNTLTEI---DVSHNTQLTE-LDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT 183

Query: 682 GKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCR 741
               +        L  LN   N+++    +    N  L  LD + N+L   +   +    
Sbjct: 184 ELDVSQNKL----LNRLNCDTNNIT---KLDLNQNIQLTFLDCSSNKL-TEID--VTPLT 233

Query: 742 KLEVLDLGNNKIRDTFPCWLKNISSLRV 769
           +L   D   N + +     L  +++L  
Sbjct: 234 QLTYFDCSVNPLTELDVSTLSKLTTLHC 261

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.8 bits (101), Expect = 6e-04
 Identities = 39/265 (14%), Positives = 76/265 (28%), Gaps = 50/265 (18%)

Query: 698 LNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTF 757
                  +  T +++      L +LD + + +  T    +     L  L   +N I    
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNNITT-L 79

Query: 758 PCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKA 817
              L   ++L  L   SN    ++           L  ++  +N        +       
Sbjct: 80  D--LSQNTNLTYLACDSNKLT-NLDVTPL----TKLTYLNCDTNKLTKLDVSQNPLLTYL 132

Query: 818 MMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGP 877
             +      +   ++     T +                        T +D   N     
Sbjct: 133 NCAR-----NTLTEIDVSHNTQL------------------------TELDCHLNKKITK 163

Query: 878 IPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLS 937
           +   +     L  L+ S N         +   + L  L+   N+++    + L     L+
Sbjct: 164 LD--VTPQTQLTTLDCSFNKI---TELDVSQNKLLNRLNCDTNNITK---LDLNQNIQLT 215

Query: 938 VLNLSHNNLEGNIPVS--TQLQSFS 960
            L+ S N L   I V+  TQL  F 
Sbjct: 216 FLDCSSNKLT-EIDVTPLTQLTYFD 239

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  115 bits (289), Expect = 4e-28
 Identities = 62/253 (24%), Positives = 101/253 (39%), Gaps = 13/253 (5%)

Query: 286 QTLDLSGNSLLRGSLP-DFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLS 344
             +  +   L   S+P   P  SS   L L       +       L  L++L L+   LS
Sbjct: 10  TEIRCNSKGLT--SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 345 GSIPTSLA--KLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHL 402
                S +    T L YLDLS N  +    +    + L HLD  ++ L      + +  L
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 403 SNLVYVDLRNNALNGSIPRSLFS-IPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSA 461
            NL+Y+D+ +          +F+ +  L+ L +A N F              L  LDLS 
Sbjct: 126 RNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 462 NRLEGPIPMSIFE-LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLT-VNASG 519
            +LE  +  + F  L +L++L +S N    ++     + L +L  L+ S N++       
Sbjct: 185 CQLEQ-LSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242

Query: 520 DSSFPSQVRTLRL 532
              FPS +  L L
Sbjct: 243 LQHFPSSLAFLNL 255

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.8 bits (231), Expect = 2e-20
 Identities = 63/324 (19%), Positives = 95/324 (29%), Gaps = 74/324 (22%)

Query: 455 DTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLT 514
             +  ++  L   +P  I    +   L L SNKL  ++      +L  L +L LS N L+
Sbjct: 10  TEIRCNSKGLTS-VPTGIPS--SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 515 VNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGG 574
                  S                        + L  LDLS N +   + +    +    
Sbjct: 66  FKGCCSQSD--------------------FGTTSLKYLDLSFNGVI-TMSSNFLGLEQ-- 102

Query: 575 LEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSS 634
           LE+L+  H+ L  +        L  +  LD+                             
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT----------------------RV 140

Query: 635 IPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDI 694
               I        F  LSS                L VL ++ N         +      
Sbjct: 141 AFNGI--------FNGLSS----------------LEVLKMAGNSFQENFLPDIFTELRN 176

Query: 695 LGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIR 754
           L  L+L    L       F     LQ L+++ N               L+VLD   N I 
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

Query: 755 DTFPCWLKNI-SSLRVLVLRSNSF 777
            +    L++  SSL  L L  N F
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 49/218 (22%), Positives = 79/218 (36%), Gaps = 17/218 (7%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFA 140
           L LS   +S +   S        L+ L+L+FN      + S    L  L HL+  ++   
Sbjct: 57  LSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN--GVITMSSNFLGLEQLEHLDFQHSNLK 114

Query: 141 GQIPIQV-SAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPG 199
                 V  ++  L+ LD+S                +G+   L+ L  L + G N     
Sbjct: 115 QMSEFSVFLSLRNLIYLDISH-------THTRVAF-NGIFNGLSSLEVLKMAG-NSFQEN 165

Query: 200 IEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFF 259
                  + L   L  L LS C L      +   L SL V+ +  N+  S          
Sbjct: 166 FLP-DIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223

Query: 260 NLTSLNLSSSGLNGTFPETILQ--VHTLQTLDLSGNSL 295
           +L  L+ S + +  T  +  LQ    +L  L+L+ N  
Sbjct: 224 SLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 49/240 (20%), Positives = 85/240 (35%), Gaps = 21/240 (8%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSG-LGNLTNLTHLNLSNAGF 139
           L+L    +   + +      L  L  L+L+ N  +     S      T+L +L+LS  G 
Sbjct: 33  LELESNKLQ-SLPHGV-FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90

Query: 140 AGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPG 199
              +      + +L  LD   S        L+  +   +  +L  L  L +   +     
Sbjct: 91  I-TMSSNFLGLEQLEHLDFQHS-------NLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142

Query: 200 IEWCQALSSLVPKLRVLSLSSCYLSGPIHP-SLAKLQSLSVICLDQNDLSSPVPEFLADF 258
                 L      L VL ++         P    +L++L+ + L Q  L    P      
Sbjct: 143 NGIFNGL----SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198

Query: 259 FNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGN---SLLRGSLPDFPKNSSLRTLMLS 315
            +L  LN+S +            +++LQ LD S N   +  +  L  FP +  L  L L+
Sbjct: 199 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS--LAFLNLT 256

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 66.6 bits (163), Expect = 8e-12
 Identities = 65/317 (20%), Positives = 109/317 (34%), Gaps = 61/317 (19%)

Query: 670 LLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLS--GTLSVTFPGNCGLQTLDLNEN 727
              L+L +NKL         K++  L  L+L  N LS  G  S +  G   L+ LDL+ N
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQ-LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 728 QLGGTVPKSLANCRKLEVLDLGNNKIRDTFPC-WLKNISSLRVLVLRSNSFYGSITCREN 786
            +  T+  +     +LE LD  ++ ++         ++ +L  L +             N
Sbjct: 89  GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH----TRVAFN 143

Query: 787 D--DSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQD 844
              +    L+++ +A N+F                      Q NF    F  L ++    
Sbjct: 144 GIFNGLSSLEVLKMAGNSF----------------------QENFLPDIFTELRNL---- 177

Query: 845 VVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPS 904
                               T +D S+   +   P     L SL  LN S N F      
Sbjct: 178 --------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217

Query: 905 TIGNLQQLESLDLSMNHLSDQIPIQLANL-TFLSVLNLSHNNLE---GNIPVSTQLQSFS 960
               L  L+ LD S+NH+      +L +  + L+ LNL+ N+      +      ++   
Sbjct: 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQR 277

Query: 961 PTSFEGNEGLCGAPLNV 977
               E     C  P + 
Sbjct: 278 QLLVEVERMECATPSDK 294

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  110 bits (278), Expect = 2e-26
 Identities = 67/291 (23%), Positives = 114/291 (39%), Gaps = 26/291 (8%)

Query: 211 PKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSG 270
           P   +L L +  ++         L++L  + L  N +S   P   A    L  L LS + 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 271 LNGTFPETILQVHTLQTLDLSGNSLLRGSLPD--FPKNSSLRTLMLSYAN---FSGVLPD 325
           L    PE + +  TLQ L +  N +    +    F   + +  + L   N    SG+   
Sbjct: 112 LK-ELPEKMPK--TLQELRVHENEI--TKVRKSVFNGLNQMIVVELGT-NPLKSSGIENG 165

Query: 326 SIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMS--KNLTHL 383
           +   +K LS + +A  N++ +IP  L     L  L L  NK    + +  +    NL  L
Sbjct: 166 AFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITK-VDAASLKGLNNLAKL 221

Query: 384 DLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKF---- 439
            LS N++  A+ +    +  +L  + L NN L   +P  L     +Q + L NN      
Sbjct: 222 GLSFNSI-SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIG 279

Query: 440 -GGPIPEFSNASYSALDTLDLSANRLE-GPIPMSIFE-LKNLKILMLSSNK 487
                P   N   ++   + L +N ++   I  S F  +     + L + K
Sbjct: 280 SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  110 bits (278), Expect = 2e-26
 Identities = 75/401 (18%), Positives = 132/401 (32%), Gaps = 106/401 (26%)

Query: 356 QLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNAL 415
            L  +  S       +P   +  +   LDL NN +   I   D+++L NL  + L NN +
Sbjct: 32  HLRVVQCSDLGLEK-VPK-DLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI 88

Query: 416 NGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFEL 475
           +  I    F+                            L+ L LS N+L+  +P  +   
Sbjct: 89  S-KISPGAFA------------------------PLVKLERLYLSKNQLKE-LPEKMP-- 120

Query: 476 KNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFP--SQVRTLRLA 533
           K L+ L +  N++   V+ +    L  +I +EL  N L  +   + +F    ++  +R+A
Sbjct: 121 KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179

Query: 534 SCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYS 593
              +  IP       L  L L  N+I+ ++     + G   L  L LS N +S++    S
Sbjct: 180 DTNITTIPQ-GLPPSLTELHLDGNKIT-KVDAASLK-GLNNLAKLGLSFNSISAVD-NGS 235

Query: 594 ISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSS 653
           +++   +  L L++N+L                        +PG                
Sbjct: 236 LANTPHLRELHLNNNKLV----------------------KVPGG---------LADH-- 262

Query: 654 NSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTF 713
                         KY+ V+ L NN +S                  +  N          
Sbjct: 263 --------------KYIQVVYLHNNNIS-----------------AIGSNDFCPP--GYN 289

Query: 714 PGNCGLQTLDLNENQLGGTV--PKSLANCRKLEVLDLGNNK 752
                   + L  N +      P +         + LGN K
Sbjct: 290 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  109 bits (275), Expect = 3e-26
 Identities = 59/331 (17%), Positives = 115/331 (34%), Gaps = 43/331 (12%)

Query: 454 LDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNL 513
           L  +  S   LE  +P  +    +  +L L +NK+   ++    + L+NL  L L  N +
Sbjct: 33  LRVVQCSDLGLEK-VPKDLPP--DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI 88

Query: 514 TVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNG 573
           +  + G  +   ++  L L+  +LK +P    ++ L  L + +N+I+ ++   V+  G  
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT-LQELRVHENEIT-KVRKSVFN-GLN 145

Query: 574 GLEYLNLSHNLLSSLQ-RPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFT 632
            +  + L  N L S      +   +  ++ + +    +   IP                 
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIP------------QGLPP 192

Query: 633 SSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMS 692
           S                 L  N IT V   ++     L  L LS N +S      L    
Sbjct: 193 S------------LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240

Query: 693 DILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGG------TVPKSLANCRKLEVL 746
             L  L+L  N L   +      +  +Q + L+ N +          P           +
Sbjct: 241 H-LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 298

Query: 747 DLGNNKIRDTF--PCWLKNISSLRVLVLRSN 775
            L +N ++     P   + +     + L + 
Sbjct: 299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 97.4 bits (243), Expect = 6e-22
 Identities = 68/333 (20%), Positives = 113/333 (33%), Gaps = 57/333 (17%)

Query: 117 TEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLS 176
            ++P  L    +   L+L N             +  L TL L ++       K+   +  
Sbjct: 44  EKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-------KISKIS-P 93

Query: 177 GLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPK-LRVLSLSSCYLSGPIHP-SLAKL 234
           G    L +L  LYL    +          L   +PK L+ L +    ++  +       L
Sbjct: 94  GAFAPLVKLERLYLSKNQLKE--------LPEKMPKTLQELRVHENEITK-VRKSVFNGL 144

Query: 235 QSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNS 294
             + V+ L  N L S   E  A F  +  L                       + ++  +
Sbjct: 145 NQMIVVELGTNPLKSSGIENGA-FQGMKKL---------------------SYIRIADTN 182

Query: 295 L--LRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLA 352
           +  +   LP      SL  L L     + V   S+  L NL++L L+  ++S     SLA
Sbjct: 183 ITTIPQGLP-----PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237

Query: 353 KLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNAL----PGAISST-DWEHLSNLVY 407
               L  L L++NK V     L   K +  + L NN +                 ++   
Sbjct: 238 NTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 297

Query: 408 VDLRNNALN-GSIPRSLFS-IPMLQQLLLANNK 438
           V L +N +    I  S F  + +   + L N K
Sbjct: 298 VSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 75.0 bits (185), Expect = 2e-14
 Identities = 52/250 (20%), Positives = 90/250 (36%), Gaps = 33/250 (13%)

Query: 528 RTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSS 587
           R ++ +   L+ +P          LDL +N+I+ EI +  ++     L  L L +N +S 
Sbjct: 34  RVVQCSDLGLEKVPKDLPPD-TALLDLQNNKIT-EIKDGDFK-NLKNLHTLILINNKISK 90

Query: 588 LQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTI 647
           +  P + + L  +  L L  NQL+      P+    +    N  T  +   +        
Sbjct: 91  IS-PGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITK-VRKSV-------- 140

Query: 648 FFSLSSNSITGVIPETICRAKYLLVLDLSNNKL-SGKMPTCLIKMSDILGVLNLRGNSLS 706
           F  L+                 ++V++L  N L S  +     +    L  + +   +++
Sbjct: 141 FNGLNQ----------------MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184

Query: 707 GTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISS 766
                  P    L  L L+ N++      SL     L  L L  N I       L N   
Sbjct: 185 TIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241

Query: 767 LRVLVLRSNS 776
           LR L L +N 
Sbjct: 242 LRELHLNNNK 251

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.8 bits (148), Expect = 8e-10
 Identities = 42/246 (17%), Positives = 78/246 (31%), Gaps = 53/246 (21%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSG-LGNLTNLTHLNLSNAGF 139
           L + E  I+ ++  S     L  +  + L  N   ++ I +G    +  L+++ +++   
Sbjct: 126 LRVHENEIT-KVRKSV-FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183

Query: 140 AGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPG 199
                I       L  L L             N         + ++ A  L G       
Sbjct: 184 TT---IPQGLPPSLTELHLDG-----------N--------KITKVDAASLKG------- 214

Query: 200 IEWCQALSSLVPKLRVLSLSSCYLSGPIHP-SLAKLQSLSVICLDQNDLSSPVPEFLADF 258
                     +  L  L LS   +S  +   SLA    L  + L+ N L   VP  LAD 
Sbjct: 215 ----------LNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKLVK-VPGGLADH 262

Query: 259 FNLTSLNLSSSGL----NGTF--PETILQVHTLQTLDLSGNSLLRGSLPD--FPKNSSLR 310
             +  + L ++ +    +  F  P    +  +   + L  N +    +    F       
Sbjct: 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 322

Query: 311 TLMLSY 316
            + L  
Sbjct: 323 AVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 884 RLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSH 943
            L +L  L  S N+       ++ N   L  L L+ N L  ++P  LA+  ++ V+ L +
Sbjct: 214 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN 272

Query: 944 NNLEGNIPVST 954
           NN+   I  + 
Sbjct: 273 NNIS-AIGSND 282

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  105 bits (264), Expect = 1e-24
 Identities = 77/377 (20%), Positives = 129/377 (34%), Gaps = 83/377 (22%)

Query: 356 QLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNAL 415
            L  +  S       +P   +S + T LDL NN +   +   D++ L +L  + L NN +
Sbjct: 34  HLRVVQCSDLGLKA-VPK-EISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI 90

Query: 416 NGSIPRSLFS-IPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFE 474
           +  I    FS +  LQ+L ++ N     + E      S+L  L +  NR+   +P  +F 
Sbjct: 91  S-KIHEKAFSPLRKLQKLYISKNH----LVEIPPNLPSSLVELRIHDNRIRK-VPKGVFS 144

Query: 475 -LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLA 533
            L+N+  + +  N L  +           L  L +S   LT         P  +  L L 
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT---GIPKDLPETLNELHLD 201

Query: 534 SCKLKVIPN--LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRP 591
             K++ I    L   SKL+ L L  NQI   I N         L  L+L +N LS +  P
Sbjct: 202 HNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLS-FLPTLRELHLDNNKLSRV--P 257

Query: 592 YSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSL 651
             + DL L+ V+ LH+N +                      + +  +    + F +  + 
Sbjct: 258 AGLPDLKLLQVVYLHTNNI----------------------TKVGVNDFCPVGFGVKRA- 294

Query: 652 SSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSV 711
                            Y   + L NN          +   ++                 
Sbjct: 295 -----------------YYNGISLFNNP---------VPYWEVQ--------------PA 314

Query: 712 TFPGNCGLQTLDLNENQ 728
           TF        +     +
Sbjct: 315 TFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  102 bits (256), Expect = 1e-23
 Identities = 53/288 (18%), Positives = 98/288 (34%), Gaps = 21/288 (7%)

Query: 211 PKLRVLSLSSCYLSGPIHP-SLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSS 269
           P   +L L +  +S  +       LQ L  + L  N +S    +  +    L  L +S +
Sbjct: 54  PDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112

Query: 270 GLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSY-ANFSGVLPDSIG 328
            L    P  +    +L  L +  N + +     F    ++  + +      +        
Sbjct: 113 HLV-EIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

Query: 329 NLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMS--KNLTHLDLS 386
           +   L+ L ++   L+  IP  L     L  L L  NK    I    +     L  L L 
Sbjct: 170 DGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLG 225

Query: 387 NNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKF-----GG 441
           +N +   I +     L  L  + L NN L+  +P  L  + +LQ + L  N         
Sbjct: 226 HNQI-RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVND 283

Query: 442 PIPEFSNASYSALDTLDLSANRLE-GPIPMSIFE-LKNLKILMLSSNK 487
             P       +  + + L  N +    +  + F  + +   +   + K
Sbjct: 284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  101 bits (253), Expect = 2e-23
 Identities = 63/332 (18%), Positives = 116/332 (34%), Gaps = 46/332 (13%)

Query: 454 LDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNL 513
           L  +  S   L+  +P  I    +  +L L +N ++  ++    + L++L  L L  N +
Sbjct: 35  LRVVQCSDLGLKA-VPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI 90

Query: 514 TVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNG 573
           +       S   +++ L ++   L  IP     S L  L + DN+I  ++P  V+  G  
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS-LVELRIHDNRIR-KVPKGVFS-GLR 147

Query: 574 GLEYLNLSHNLLSSLQRPYSI-SDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFT 632
            +  + +  N L +          L L   L +   +L                      
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKL-NYLRISEAKL---------------------- 184

Query: 633 SSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMS 692
           + IP D+  ++N      L  N I  +  E + R   L  L L +N++       L  + 
Sbjct: 185 TGIPKDLPETLNE---LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241

Query: 693 DILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVP-------KSLANCRKLEV 745
             L  L+L  N LS  +    P    LQ + L+ N +   V                   
Sbjct: 242 T-LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNG 298

Query: 746 LDLGNNKIRDTF--PCWLKNISSLRVLVLRSN 775
           + L NN +      P   + ++    +   + 
Sbjct: 299 ISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 94.7 bits (236), Expect = 4e-21
 Identities = 57/322 (17%), Positives = 104/322 (32%), Gaps = 59/322 (18%)

Query: 104 LQSLNLAFNMFNATEIPSG-LGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSY 162
              L+L  N    +E+       L +L  L L N               ++  +      
Sbjct: 56  TTLLDLQNNDI--SELRKDDFKGLQHLYALVLVN--------------NKISKIH----- 94

Query: 163 SFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPK-LRVLSLSSC 221
                              L +L+ LY+   ++          +   +P  L  L +   
Sbjct: 95  -------------EKAFSPLRKLQKLYISKNHLV--------EIPPNLPSSLVELRIHDN 133

Query: 222 YLSGPIHP-SLAKLQSLSVICLDQNDL-SSPVPEFLADFFNLTSLNLSSSGLNGTFPETI 279
            +   +     + L++++ I +  N L +S       D   L  L +S + L    P+ +
Sbjct: 134 RIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL 191

Query: 280 LQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLA 339
            +  TL  L L  N +    L D  + S L  L L +     +   S+  L  L  L L 
Sbjct: 192 PE--TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249

Query: 340 RCNLSGSIPTSLAKLTQLVYLDLSSNKFV-------GPIPSLHMSKNLTHLDLSNNALP- 391
              LS  +P  L  L  L  + L +N           P+           + L NN +P 
Sbjct: 250 NNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308

Query: 392 GAISSTDWEHLSNLVYVDLRNN 413
             +    +  +++ + +   N 
Sbjct: 309 WEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 93.9 bits (234), Expect = 9e-21
 Identities = 58/273 (21%), Positives = 92/273 (33%), Gaps = 22/273 (8%)

Query: 176 SGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQ 235
               + L  L AL L    IS   I   +A S L  KL+ L +S  +L   I P+L    
Sbjct: 71  KDDFKGLQHLYALVLVNNKISK--IH-EKAFSPL-RKLQKLYISKNHLVE-IPPNL--PS 123

Query: 236 SLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGL-NGTFPETILQVHTLQTLDLSGNS 294
           SL  + +  N +        +   N+  + +  + L N  F         L  L +S   
Sbjct: 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK 183

Query: 295 LLRGSLPDFPKN--SSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLA 352
           L        PK+   +L  L L +     +  + +     L RL L    +      SL+
Sbjct: 184 LTG-----IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238

Query: 353 KLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNAL----PGAISSTDWE-HLSNLVY 407
            L  L  L L +NK       L   K L  + L  N +            +    +    
Sbjct: 239 FLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNG 298

Query: 408 VDLRNNAL-NGSIPRSLFS-IPMLQQLLLANNK 438
           + L NN +    +  + F  +     +   N K
Sbjct: 299 ISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.0 bits (190), Expect = 3e-15
 Identities = 55/257 (21%), Positives = 89/257 (34%), Gaps = 48/257 (18%)

Query: 528 RTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSS 587
           R ++ +   LK +P   S      LDL +N IS E+    ++ G   L  L L +N +S 
Sbjct: 36  RVVQCSDLGLKAVPKEISPD-TTLLDLQNNDIS-ELRKDDFK-GLQHLYALVLVNNKISK 92

Query: 588 LQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTI 647
           +    + S L  +  L +  N L                        IP ++        
Sbjct: 93  IH-EKAFSPLRKLQKLYISKNHL----------------------VEIPPNL-------- 121

Query: 648 FFS------LSSNSITGVIPETICRAKYLLVLDLSNNKLSGKM--PTCLIKMSDILGVLN 699
             S      +  N I  V        + +  +++  N L      P     +   L  L 
Sbjct: 122 -PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK--LNYLR 178

Query: 700 LRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPC 759
           +    L+G           L  L L+ N++     + L    KL  L LG+N+IR     
Sbjct: 179 ISEAKLTGIPKDLPET---LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG 235

Query: 760 WLKNISSLRVLVLRSNS 776
            L  + +LR L L +N 
Sbjct: 236 SLSFLPTLRELHLDNNK 252

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 45/245 (18%), Positives = 78/245 (31%), Gaps = 54/245 (22%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFA 140
           L + +  I  ++        L+ +  + +  N    +    G  +   L +L +S A   
Sbjct: 128 LRIHDNRIR-KVPKGV-FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA--- 182

Query: 141 GQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNL-AELRALYLDGVNISAPG 199
                                             L+G+ ++L   L  L+LD   I A  
Sbjct: 183 ---------------------------------KLTGIPKDLPETLNELHLDHNKIQA-- 207

Query: 200 IEWCQALSSLVPKLRVLSLSSCYLSGPIHP-SLAKLQSLSVICLDQNDLSSPVPEFLADF 258
           IE  + L     KL  L L    +   I   SL+ L +L  + LD N LS  VP  L D 
Sbjct: 208 IE-LEDLLRY-SKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKLSR-VPAGLPDL 263

Query: 259 FNLTSLNLSSSGL----NGTFP--ETILQVHTLQTLDLSGNSLLRGSLPD--FPKNSSLR 310
             L  + L ++ +       F      ++      + L  N +    +    F   +   
Sbjct: 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323

Query: 311 TLMLS 315
            +   
Sbjct: 324 AIQFG 328

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 884 RLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSH 943
           R   LY L    N        ++  L  L  L L  N LS ++P  L +L  L V+ L  
Sbjct: 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHT 273

Query: 944 NNLEGNIPVST 954
           NN+   + V+ 
Sbjct: 274 NNIT-KVGVND 283

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  108 bits (271), Expect = 2e-24
 Identities = 62/389 (15%), Positives = 119/389 (30%), Gaps = 83/389 (21%)

Query: 456 TLDLSANRLEGPIPMSIF-ELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLT 514
           + +   N + G      F      +   L     N  V L     +     L+L+  NL+
Sbjct: 14  SQNSFYNTISG-TYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS 72

Query: 515 VNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGG 574
              S   + P Q+  L +    L  +P L +   L  LD  DN++S  +P       +  
Sbjct: 73  ---SLPDNLPPQITVLEITQNALISLPELPAS--LEYLDACDNRLS-TLPE---LPAS-- 121

Query: 575 LEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSS 634
           L++L++ +N L+ L  P   + L     ++  +NQL                        
Sbjct: 122 LKHLDVDNNQLTML--PELPALL---EYINADNNQLT----------------------M 154

Query: 635 IPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDI 694
           +P    +                            L VL + NN+L     T L ++ + 
Sbjct: 155 LPELPTS----------------------------LEVLSVRNNQL-----TFLPELPES 181

Query: 695 LGVLNLRGNSLSGTLSVTFPGNCGLQT----LDLNENQLGGTVPKSLANCRKLEVLDLGN 750
           L  L++  N L  +L      N   +         EN++   +P+++ +      + L +
Sbjct: 182 LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILED 239

Query: 751 NKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQK 810
           N +       L   ++          F    +  +   +     + D  +  F       
Sbjct: 240 NPLSSRIRESLSQQTAQPDYHGPRIYF----SMSDGQQNTLHRPLADAVTAWFPENKQSD 295

Query: 811 CITSWKAMMSDEDEAQSNFKDVHFELLTD 839
               W A   +E     +           
Sbjct: 296 VSQIWHAFEHEEHANTFSAFLDRLSDTVS 324

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.6 bits (201), Expect = 5e-16
 Identities = 57/336 (16%), Positives = 108/336 (32%), Gaps = 51/336 (15%)

Query: 81  LDLSEESISGRIDNSSPLL--SLKYLQSLNLAFNMFN--ATEIPSGLGNLTNLTHLNLSN 136
             LS+ S    I  +      +    +   L     N   + +   L  +   + L L+ 
Sbjct: 11  FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNR 68

Query: 137 AGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNIS 196
              +  +P  +    ++  L+++ +             L  L +  A L  L      + 
Sbjct: 69  LNLS-SLPDNLP--PQITVLEITQN------------ALISLPELPASLEYLDACDNRL- 112

Query: 197 APGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLA 256
                    L  L   L+ L + +  L+  +    A L+ ++    D N L+  +PE   
Sbjct: 113 -------STLPELPASLKHLDVDNNQLTM-LPELPALLEYIN---ADNNQLTM-LPELPT 160

Query: 257 DFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSY 316
              +L  L++ ++ L    PE      +L+ LD+S N L   SLP  P  +        +
Sbjct: 161 ---SLEVLSVRNNQLT-FLPELP---ESLEALDVSTNLL--ESLPAVPVRNHHSEETEIF 211

Query: 317 ANFSG----VLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIP 372
                     +P++I +L     + L    LS  I  SL++ T           +     
Sbjct: 212 FRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQP-DYHGPRIYFSMSD 270

Query: 373 SLHMSKNLTHLDLSNNALPGAIS---STDWEHLSNL 405
               + +    D      P       S  W    + 
Sbjct: 271 GQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHE 306

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 70.8 bits (173), Expect = 1e-12
 Identities = 61/329 (18%), Positives = 114/329 (34%), Gaps = 62/329 (18%)

Query: 634 SIPGDIGNSMNFTIFFSLSSNSITGVIPETICRA---KYLLVLDLSNNKLSGKMPTCLIK 690
           SI   I N  NF++  +   N+I+G   +        +   +   + N+    +  CLI 
Sbjct: 2   SIMLPINN--NFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN 59

Query: 691 MSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGN 750
                  L L   +LS +L    P    +  L++ +N L  ++P+  A+   LE LD  +
Sbjct: 60  Q---FSELQLNRLNLS-SLPDNLPPQ--ITVLEITQNALI-SLPELPAS---LEYLDACD 109

Query: 751 NKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQK 810
           N++  T P   +  +SL+ L + +N            +   +L+ ++  +N     +P+ 
Sbjct: 110 NRLS-TLP---ELPASLKHLDVDNNQL------TMLPELPALLEYINADNNQLT-MLPEL 158

Query: 811 CITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFS 870
             TS + +             V    LT                  L ++     ++D S
Sbjct: 159 -PTSLEVL------------SVRNNQLT-----------------FLPELPESLEALDVS 188

Query: 871 RNNFDGPIPEKIGRLKSL----YGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQI 926
            N  +  +P    R              +N     IP  I +L    ++ L  N LS +I
Sbjct: 189 TNLLES-LPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRI 246

Query: 927 PIQLANLTFLSVLNLSHNNLEGNIPVSTQ 955
              L+  T     +        +      
Sbjct: 247 RESLSQQTAQPDYHGPRIYFSMSDGQQNT 275

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 9/104 (8%)

Query: 871 RNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLES----LDLSMNHLSDQI 926
           RNN    +PE    L++L   + S N     +P+        E          N ++  I
Sbjct: 168 RNNQLTFLPELPESLEAL---DVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HI 222

Query: 927 PIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGL 970
           P  + +L     + L  N L   I  S   Q+  P         
Sbjct: 223 PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  101 bits (254), Expect = 1e-22
 Identities = 64/262 (24%), Positives = 100/262 (38%), Gaps = 19/262 (7%)

Query: 356 QLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNAL 415
           Q   +  +       +P   +  N  +L+L  N +   I +  + HL +L  + L  N++
Sbjct: 55  QFSKVVCTRRGLSE-VPQ-GIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSI 111

Query: 416 NGSIPRSLFS-IPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFE 474
              I    F+ +  L  L L +N     IP  +    S L  L L  N +E  IP   F 
Sbjct: 112 R-QIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPIES-IPSYAFN 168

Query: 475 -LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFP--SQVRTLR 531
            + +L  L L   K    +   A + L NL  L L   N+        +      +  L 
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD----MPNLTPLVGLEELE 224

Query: 532 LASCKLKVIPN--LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQ 589
           ++      I        S L  L + ++Q+S  I    ++ G   L  LNL+HN LSSL 
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFD-GLASLVELNLAHNNLSSLP 282

Query: 590 RPYSISDLNLMTVLDLHSNQLQ 611
                + L  +  L LH N   
Sbjct: 283 -HDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 97.1 bits (242), Expect = 3e-21
 Identities = 51/268 (19%), Positives = 95/268 (35%), Gaps = 25/268 (9%)

Query: 128 NLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRA 187
             + +  +  G + ++P  +   +    L+L  +        ++    +   ++L  L  
Sbjct: 55  QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMEN-------NIQMIQ-ADTFRHLHHLEV 103

Query: 188 LYLDGVNISA--PGIEWCQALSSLVPKLRVLSLSSCYLSGPIHP-SLAKLQSLSVICLDQ 244
           L L   +I     G     A + L   L  L L   +L+  I   +   L  L  + L  
Sbjct: 104 LQLGRNSIRQIEVG-----AFNGL-ASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRN 156

Query: 245 NDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQ-VHTLQTLDLSGNSLLRGSLPDF 303
           N + S          +L  L+L          E   + +  L+ L+L   ++    +P+ 
Sbjct: 157 NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK--DMPNL 214

Query: 304 PKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLS 363
                L  L +S  +F  + P S   L +L +L +    +S     +   L  LV L+L+
Sbjct: 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274

Query: 364 SNKFVG-PIPSLHMSKNLTHLDLSNNAL 390
            N     P       + L  L L +N  
Sbjct: 275 HNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 88.3 bits (219), Expect = 2e-18
 Identities = 57/328 (17%), Positives = 99/328 (30%), Gaps = 79/328 (24%)

Query: 451 YSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSY 510
            +    +  +   L   +P  I    N + L L  N +   +Q    + L +L  L+L  
Sbjct: 53  SNQFSKVVCTRRGLSE-VPQGIPS--NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGR 108

Query: 511 NNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEI 570
           N++                                 + L  L+L DN ++  IP+  +E 
Sbjct: 109 NSI-------RQIEVGA---------------FNGLASLNTLELFDNWLT-VIPSGAFE- 144

Query: 571 GNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDL-HSNQLQGNIPHPPRNAVLVDYSNN 629
               L  L L +N + S+   Y+ + +  +  LDL    +L                   
Sbjct: 145 YLSKLRELWLRNNPIESIP-SYAFNRVPSLMRLDLGELKKL------------------- 184

Query: 630 SFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLI 689
                I            F  L +                L  L+L    +   MP  L 
Sbjct: 185 ---EYISEGA--------FEGLFN----------------LKYLNLGMCNIK-DMPN-LT 215

Query: 690 KMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLG 749
            +   L  L + GN        +F G   L+ L +  +Q+      +      L  L+L 
Sbjct: 216 PLVG-LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274

Query: 750 NNKIRDTFPCWLKNISSLRVLVLRSNSF 777
           +N +          +  L  L L  N +
Sbjct: 275 HNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.1 bits (125), Expect = 6e-07
 Identities = 48/245 (19%), Positives = 75/245 (30%), Gaps = 56/245 (22%)

Query: 718 GLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVL------- 770
             + L+L EN +      +  +   LEVL LG N IR         ++SL  L       
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 771 -VLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNF 829
            V+ S +F               L+ + + +N                          + 
Sbjct: 136 TVIPSGAFEYL----------SKLRELWLRNNPI-----------------------ESI 162

Query: 830 KDVHFELLTDIFYQDVVTVTWKGREMELVKI-------LSIFTSIDFSRNNFDGPIPEKI 882
               F  +  +           G   +L  I       L     ++    N    +P  +
Sbjct: 163 PSYAFNRVPSL------MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-L 214

Query: 883 GRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLS 942
             L  L  L  S N F    P +   L  L+ L +  + +S         L  L  LNL+
Sbjct: 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274

Query: 943 HNNLE 947
           HNNL 
Sbjct: 275 HNNLS 279

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 99.2 bits (247), Expect = 1e-22
 Identities = 54/266 (20%), Positives = 89/266 (33%), Gaps = 32/266 (12%)

Query: 185 LRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQ 244
           L+ L +    I +  +     +  +   L+ L+L +  ++G   P L +     +  L+ 
Sbjct: 70  LKRLTVRAARIPSRILFGALRVLGI-SGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 245 NDLS-SPVPEFLADFFN-----LTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRG 298
            ++S +    +LA+        L  L+++ +       E +     L TLDLS N  L  
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 299 SLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLV 358
                                S + P     L+ L+  +      SG      A   QL 
Sbjct: 189 R-----------------GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ 231

Query: 359 YLDLSSNKFVGPIPSL--HMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALN 416
            LDLS N       +        L  L+LS   L            + L  +DL  N L+
Sbjct: 232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL----KQVPKGLPAKLSVLDLSYNRLD 287

Query: 417 GSIPRSLFSIPMLQQLLLANNKFGGP 442
              P     +P +  L L  N F   
Sbjct: 288 -RNPSPDE-LPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 95.0 bits (236), Expect = 3e-21
 Identities = 54/279 (19%), Positives = 93/279 (33%), Gaps = 23/279 (8%)

Query: 253 EFLADFFNLTSLNLSSSGLNGTFPET-ILQVHTLQTLDLSGNSLLRGSLPDFPKN---SS 308
           E      +L  L             T I++  +L+ L +    +    L    +    S 
Sbjct: 37  ELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISG 96

Query: 309 LRTLMLSYANFSGVLPDSIGNL--KNLSRLDLARCNLSGSIPTSLA----KLTQLVYLDL 362
           L+ L L     +G  P  +      +L+ L+L   + +                L  L +
Sbjct: 97  LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156

Query: 363 SSNKF-VGPIPSLHMSKNLTHLDLSNNALPGAIS---STDWEHLSNLVYVDLRNNALN-- 416
           +           + +   L+ LDLS+N   G      +        L  + LRN  +   
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216

Query: 417 -GSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFEL 475
            G       +   LQ L L++N         S    S L++L+LS   L+  +P  +   
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGLP-- 273

Query: 476 KNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLT 514
             L +L LS N+L+      +   L  +  L L  N   
Sbjct: 274 AKLSVLDLSYNRLDR---NPSPDELPQVGNLSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 94.2 bits (234), Expect = 6e-21
 Identities = 56/287 (19%), Positives = 89/287 (31%), Gaps = 20/287 (6%)

Query: 195 ISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEF 254
           + A  +E      SL   L+ +   +             L+ L+V               
Sbjct: 31  LGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALR 90

Query: 255 LADFFNLTSLNLSSSGLNGTFPETILQVH--TLQTLDLSGNSL--LRGSLPDFP--KNSS 308
           +     L  L L +  + GT P  +L+     L  L+L   S       L +        
Sbjct: 91  VLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPG 150

Query: 309 LRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLA----KLTQLVYLDLSS 364
           L+ L ++ A+      + +     LS LDL+     G      A    K   L  L L +
Sbjct: 151 LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN 210

Query: 365 NKF----VGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIP 420
                              L  LDLS+N+L  A  +   +  S L  ++L    L   +P
Sbjct: 211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVP 269

Query: 421 RSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGP 467
           + L     L  L L+ N+     P         +  L L  N     
Sbjct: 270 KGLP--AKLSVLDLSYNRLDR-NPSP--DELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.4 bits (206), Expect = 2e-17
 Identities = 57/318 (17%), Positives = 86/318 (27%), Gaps = 66/318 (20%)

Query: 286 QTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSR---LDLARCN 342
             L         G   D  K+ SL+ L +  A     +      +  +S    L L    
Sbjct: 47  YLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106

Query: 343 LSGSIPTSLAKLT--QLVYLDLSSNKFVGPIPSL-----HMSKNLTHLDLSNNALPGAIS 395
           ++G+ P  L + T   L  L+L +  +      L      +   L  L ++        S
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFS 165

Query: 396 STDWEHLSNLVYVDLRNNALNGSIPRS----LFSIPMLQQLLLANNKFGGPIPEFSNASY 451
                    L  +DL +N   G             P LQ L L N               
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM------------ 213

Query: 452 SALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYN 511
                         G           L+ L LS N L       +      L  L LS+ 
Sbjct: 214 ----------ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263

Query: 512 NLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIG 571
            L          P  +                   +KL  LDLS N++    P+      
Sbjct: 264 GLK-------QVPKGLP------------------AKLSVLDLSYNRLD-RNPS---PDE 294

Query: 572 NGGLEYLNLSHNLLSSLQ 589
              +  L+L  N     +
Sbjct: 295 LPQVGNLSLKGNPFLDSE 312

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.9 bits (184), Expect = 1e-14
 Identities = 73/324 (22%), Positives = 109/324 (33%), Gaps = 47/324 (14%)

Query: 58  WSQSTDCCTWCGVDCDEAGRVIGLDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNAT 117
           WS + +C     V+    GR +   L        +   + ++    L+ L +      + 
Sbjct: 24  WSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSR 83

Query: 118 EIPSGLG--NLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNL 175
            +   L    ++ L  L L N    G  P  +         DL+        L L N + 
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPPLL---EATGPDLNI-------LNLRNVSW 133

Query: 176 SGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQ 235
           +     LAEL+                      L P L+VLS++  +        +    
Sbjct: 134 ATRDAWLAELQQW--------------------LKPGLKVLSIAQAHSLNFSCEQVRVFP 173

Query: 236 SLSVICLDQNDLSSPVPEFLA----DFFNLTSLNLSSSGLN---GTFPETILQVHTLQTL 288
           +LS + L  N          A     F  L  L L ++G+    G           LQ L
Sbjct: 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233

Query: 289 DLSGNSLLRGSLPD--FPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGS 346
           DLS NS LR +         S L +L LS+     V     G    LS LDL+   L   
Sbjct: 234 DLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK---GLPAKLSVLDLSYNRLD-R 288

Query: 347 IPTSLAKLTQLVYLDLSSNKFVGP 370
            P S  +L Q+  L L  N F+  
Sbjct: 289 NP-SPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.2 bits (182), Expect = 3e-14
 Identities = 70/351 (19%), Positives = 111/351 (31%), Gaps = 63/351 (17%)

Query: 438 KFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAI 497
            F  P P++S    SA + L  +   L G         ++L+ L+   +      Q   I
Sbjct: 16  NFSDPKPDWS----SAFNCLGAADVELYGG-------GRSLEYLLKRVDTEADLGQFTDI 64

Query: 498 QRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDN 557
            +  +L RL +    +             +R L                S L  L L + 
Sbjct: 65  IKSLSLKRLTVRAARIP-----SRILFGALRVL--------------GISGLQELTLENL 105

Query: 558 QISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHP 617
           +++G  P  + E     L  LNL +   ++      +++L       L    +       
Sbjct: 106 EVTGTAPPPLLEATGPDLNILNLRNVSWATR--DAWLAELQQWLKPGLKVLSI------- 156

Query: 618 PRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIP--ETICRAKY--LLVL 673
                    +     +    +            LS N   G       +C  K+  L VL
Sbjct: 157 ---------AQAHSLN-FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206

Query: 674 DLSNNK---LSGKMPTCLIKMSDILGVLNLRGNSLSGTLSV-TFPGNCGLQTLDLNENQL 729
            L N      SG            L  L+L  NSL       +      L +L+L+   L
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQ-LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

Query: 730 GGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGS 780
              VPK L    KL VLDL  N++          +  +  L L+ N F  S
Sbjct: 266 K-QVPKGLP--AKLSVLDLSYNRLDRNPSPD--ELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.4 bits (180), Expect = 5e-14
 Identities = 48/271 (17%), Positives = 80/271 (29%), Gaps = 32/271 (11%)

Query: 374 LHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRS---LFSIPMLQ 430
               ++L +L    +        TD     +L  + +R   +   I      +  I  LQ
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 431 QLLLANNKFGGPIP-EFSNASYSALDTLDLSANRLEGPIP----MSIFELKNLKILMLSS 485
           +L L N +  G  P     A+   L+ L+L              +  +    LK+L ++ 
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158

Query: 486 NKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKS 545
                      ++    L  L+LS N         S+                       
Sbjct: 159 AHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALC------------------PLK 199

Query: 546 QSKLFNLDLSDNQ---ISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTV 602
              L  L L +      SG             L+ L+LSHN L       S    + +  
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQ--LQGLDLSHNSLRDAAGAPSCDWPSQLNS 257

Query: 603 LDLHSNQLQGNIPHPPRNAVLVDYSNNSFTS 633
           L+L    L+      P    ++D S N    
Sbjct: 258 LNLSFTGLKQVPKGLPAKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.9 bits (132), Expect = 5e-08
 Identities = 49/320 (15%), Positives = 84/320 (26%), Gaps = 60/320 (18%)

Query: 640 GNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGV-- 697
           G   +                   I ++  L  L +   ++  ++    +++  I G+  
Sbjct: 40  GGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQE 99

Query: 698 LNLRGNSLSGTLSVTFPGNCG--LQTLDLNENQLGG--TVPKSLANCRK--LEVLDLGNN 751
           L L    ++GT         G  L  L+L              L    K  L+VL +   
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159

Query: 752 KIRDTFPCWLKNISSLRVLVLRSNSFYGSITCREN--DDSWPMLQIVDIASNNFGGRVPQ 809
              +     ++   +L  L L  N   G            +P LQ++ + +         
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-------- 211

Query: 810 KCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDF 869
                                    E  + +                L         +D 
Sbjct: 212 -----------------------GMETPSGVCSA-------------LAAARVQLQGLDL 235

Query: 870 SRNNFDG-PIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPI 928
           S N+               L  LN S       +P  +    +L  LDLS N L    P 
Sbjct: 236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGL--PAKLSVLDLSYNRLDR-NP- 290

Query: 929 QLANLTFLSVLNLSHNNLEG 948
               L  +  L+L  N    
Sbjct: 291 SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 42/281 (14%), Positives = 77/281 (27%), Gaps = 54/281 (19%)

Query: 687 CLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVP-KSLANCRKLEV 745
           C    SD     +   N L       + G   L+ L    +          +     L+ 
Sbjct: 13  CSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKR 72

Query: 746 LDLGNNKIRDTFPCWLK---NISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNN 802
           L +   +I             IS L+ L L +    G+      + + P L I+++ + +
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 803 FGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILS 862
           +  R                    +   ++   L   +                      
Sbjct: 133 WATR-------------------DAWLAELQQWLKPGL---------------------- 151

Query: 863 IFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPI-------PSTIGNLQQLESL 915
               +  ++ +      E++    +L  L+ S N   G         P     LQ L   
Sbjct: 152 --KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209

Query: 916 DLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQL 956
           +  M   S       A    L  L+LSHN+L       +  
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 51/273 (18%), Positives = 77/273 (28%), Gaps = 60/273 (21%)

Query: 698 LNLRGNSLSGTLSVTFPGNCG---LQTLDLNENQLGGTVPKSLANC--RKLEVLDLGNNK 752
           L +R   +   +        G   LQ L L   ++ GT P  L       L +L+L N  
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 753 IRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSW---PMLQIVDIASNNFGGRVPQ 809
              T   WL  +       L+  S   + +   + +     P L  +D++ N   G    
Sbjct: 133 W-ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 810 KCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDF 869
                                                                    +  
Sbjct: 192 I-------------------------------------------SALCPLKFPTLQVLAL 208

Query: 870 SRNNF---DGPIPEKIGRLKSLYGLNFSQNAFGG-PIPSTIGNLQQLESLDLSMNHLSDQ 925
                    G           L GL+ S N+        +     QL SL+LS   L  Q
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-Q 267

Query: 926 IPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQS 958
           +P  L     LSVL+LS+N L+   P   +L  
Sbjct: 268 VPKGL--PAKLSVLDLSYNRLDR-NPSPDELPQ 297

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 96.6 bits (241), Expect = 5e-22
 Identities = 52/206 (25%), Positives = 79/206 (38%), Gaps = 7/206 (3%)

Query: 332 NLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVG-PIPSLHMSKNLTHLDLSNNAL 390
              R+ L    +S     S      L  L L SN        +      L  LDLS+NA 
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 391 PGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFS-IPMLQQLLLANNKFGGPIPEFSNA 449
             ++    +  L  L  + L    L   +   LF  +  LQ L L +N     +P+ +  
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQA-LPDDTFR 150

Query: 450 SYSALDTLDLSANRLEGPIPMSIFE-LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLEL 508
               L  L L  NR+   +P   F  L +L  L+L  N++   V   A + L  L+ L L
Sbjct: 151 DLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYL 208

Query: 509 SYNNLTVNASGDSSFPSQVRTLRLAS 534
             NNL+   +   +    ++ LRL  
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 83.1 bits (206), Expect = 2e-17
 Identities = 50/257 (19%), Positives = 89/257 (34%), Gaps = 37/257 (14%)

Query: 403 SNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSAN 462
              V        L  ++P  +      Q++ L  N+    +P  S  +   L  L L +N
Sbjct: 11  EPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISH-VPAASFRACRNLTILWLHSN 66

Query: 463 RLEGPIPMSIFE-LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDS 521
            L   I  + F  L  L+ L LS N    +V  A    L  L  L L    L        
Sbjct: 67  VLAR-IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ------- 118

Query: 522 SFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLS 581
                +                +  + L  L L DN +   +P+  +    G L +L L 
Sbjct: 119 ELGPGL---------------FRGLAALQYLYLQDNALQ-ALPDDTFR-DLGNLTHLFLH 161

Query: 582 HNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIP----HPPRNAVLVDYSNNSFTSSIPG 637
            N +SS+    +   L+ +  L LH N++  ++           + +    N+ + ++P 
Sbjct: 162 GNRISSVP-ERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPT 218

Query: 638 DIGNSMNFTIFFSLSSN 654
           +    +    +  L+ N
Sbjct: 219 EALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 55/212 (25%), Positives = 84/212 (39%), Gaps = 10/212 (4%)

Query: 183 AELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICL 242
           A  + ++L G  IS        +  +    L +L L S  L+     +   L  L  + L
Sbjct: 32  AASQRIFLHGNRISHVPA---ASFRAC-RNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 243 DQN-DLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLP 301
             N  L S  P        L +L+L   GL    P     +  LQ L L  N+L   +LP
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL--QALP 145

Query: 302 D--FPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVY 359
           D  F    +L  L L     S V   +   L +L RL L +  ++   P +   L +L+ 
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 360 LDLSSNKFVG-PIPSLHMSKNLTHLDLSNNAL 390
           L L +N     P  +L   + L +L L++N  
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 79.7 bits (197), Expect = 2e-16
 Identities = 53/260 (20%), Positives = 88/260 (33%), Gaps = 53/260 (20%)

Query: 521 SSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYL 578
              P+  + + L   ++  +P    ++   L  L L  N ++  I    +  G   LE L
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFT-GLALLEQL 85

Query: 579 NLSHNL-LSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPG 637
           +LS N  L S+  P +   L  +  L L    LQ                       +  
Sbjct: 86  DLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGLQ----------------------ELGP 122

Query: 638 DIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGV 697
            +        F  L++                L  L L +N L   +P    +    L  
Sbjct: 123 GL--------FRGLAA----------------LQYLYLQDNALQ-ALPDDTFRDLGNLTH 157

Query: 698 LNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTF 757
           L L GN +S      F G   L  L L++N++    P +  +  +L  L L  N +    
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217

Query: 758 PCWLKNISSLRVLVLRSNSF 777
              L  + +L+ L L  N +
Sbjct: 218 TEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 51/223 (22%), Positives = 77/223 (34%), Gaps = 34/223 (15%)

Query: 104 LQSLNLAFNMFNATEIPSG-LGNLTNLTHLNLSNAGFAGQIPIQV-SAMTRLVTLDLSSS 161
            Q + L  N    + +P+       NLT L L +   A +I     + +  L  LDLS  
Sbjct: 34  SQRIFLHGN--RISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD- 89

Query: 162 YSFGGPLKLENPNLS----GLLQNLAELRALYLDGVNISA--PGIEWCQALSSLVPKLRV 215
                     N  L          L  L  L+LD   +    PG         L   L+ 
Sbjct: 90  ----------NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG-----LFRGL-AALQY 133

Query: 216 LSLSSCYLSGPIHP-SLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGT 274
           L L    L   +   +   L +L+ + L  N +SS          +L  L L  + +   
Sbjct: 134 LYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 275 FPETILQVHTLQTLDLSGNSLLRGSLPD--FPKNSSLRTLMLS 315
            P     +  L TL L  N+L   +LP        +L+ L L+
Sbjct: 193 HPHAFRDLGRLMTLYLFANNL--SALPTEALAPLRALQYLRLN 233

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 43/192 (22%), Positives = 65/192 (33%), Gaps = 46/192 (23%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSG-LGNLTNLTHLNLSNAGF 139
           LDLS+ +    +D ++    L  L +L+L        E+  G    L  L +L L +   
Sbjct: 85  LDLSDNAQLRSVDPAT-FHGLGRLHTLHLDRCGL--QELGPGLFRGLAALQYLYLQD--- 138

Query: 140 AGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISA-- 197
                        L  L                       ++L  L  L+L G  IS+  
Sbjct: 139 -----------NALQALP------------------DDTFRDLGNLTHLFLHGNRISSVP 169

Query: 198 PGIEWCQALSSLVPKLRVLSLSSCYLSGPIHP-SLAKLQSLSVICLDQNDLSSPVPEFLA 256
                  A   L   L  L L    ++  +HP +   L  L  + L  N+LS+   E LA
Sbjct: 170 ER-----AFRGL-HSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLSALPTEALA 222

Query: 257 DFFNLTSLNLSS 268
               L  L L+ 
Sbjct: 223 PLRALQYLRLND 234

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 98.7 bits (246), Expect = 1e-21
 Identities = 61/259 (23%), Positives = 107/259 (41%), Gaps = 20/259 (7%)

Query: 235 QSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNS 294
           Q   VIC  + +L   VP+ +    N   LNL  + +      +   +  L+ L LS N 
Sbjct: 44  QFSKVIC-VRKNLRE-VPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 295 LLRGSLPD--FPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSL- 351
           +   ++    F   ++L TL L     + +   +   L  L  L L    +  SIP+   
Sbjct: 100 I--RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAF 156

Query: 352 AKLTQLVYLDLSSNKFVGPIP--SLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVD 409
            ++  L  LDL   K +  I   +     NL +L+L+   L       +   L  L  +D
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL---REIPNLTPLIKLDELD 213

Query: 410 LRNNALNGSIPRSLFS-IPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPI 468
           L  N L+ +I    F  +  LQ+L +  ++    I   +  +  +L  ++L+ N L   +
Sbjct: 214 LSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLVEINLAHNNLTL-L 270

Query: 469 PMSIFE-LKNLKILMLSSN 486
           P  +F  L +L+ + L  N
Sbjct: 271 PHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.4 bits (235), Expect = 2e-20
 Identities = 61/256 (23%), Positives = 108/256 (42%), Gaps = 34/256 (13%)

Query: 454 LDTLDLSANRLEGPIPMSIF-ELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNN 512
              L+L  N+++  I ++ F  L++L+IL LS N +  T+++ A   L NL  LEL  N 
Sbjct: 66  TRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR 123

Query: 513 LTVNASGDSSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSD-NQISGEIPNWVWE 569
           LT   +G   + S+++ L L +  ++ IP+        L  LDL +  ++S  I    +E
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS-YISEGAFE 182

Query: 570 IGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNN 629
            G   L YLNL+   L  +    +++ L  +  LDL  N L                   
Sbjct: 183 -GLSNLRYLNLAMCNLREIP---NLTPLIKLDELDLSGNHL------------------- 219

Query: 630 SFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLI 689
              S+I       +       +  + I  +        + L+ ++L++N L+  +P  L 
Sbjct: 220 ---SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLF 275

Query: 690 KMSDILGVLNLRGNSL 705
                L  ++L  N  
Sbjct: 276 TPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.0 bits (234), Expect = 2e-20
 Identities = 47/218 (21%), Positives = 79/218 (36%), Gaps = 10/218 (4%)

Query: 176 SGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHP-SLAKL 234
               ++L  L  L L   +I    IE   A + L   L  L L    L+  I   +   L
Sbjct: 81  VNSFKHLRHLEILQLSRNHIRT--IE-IGAFNGL-ANLNTLELFDNRLTT-IPNGAFVYL 135

Query: 235 QSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQ-VHTLQTLDLSGN 293
             L  + L  N + S          +L  L+L          E   + +  L+ L+L+  
Sbjct: 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195

Query: 294 SLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAK 353
           +L    +P+      L  L LS  + S + P S   L +L +L + +  +      +   
Sbjct: 196 NLR--EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253

Query: 354 LTQLVYLDLSSNKFVG-PIPSLHMSKNLTHLDLSNNAL 390
           L  LV ++L+ N     P        +L  + L +N  
Sbjct: 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 90.6 bits (225), Expect = 4e-19
 Identities = 56/280 (20%), Positives = 99/280 (35%), Gaps = 55/280 (19%)

Query: 501 RNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQ 558
            N   L L  N + +           +  L+L+   ++ I        + L  L+L DN+
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 559 ISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDL-HSNQLQGNIPHP 617
           ++  IPN  +      L+ L L +N + S+   Y+ + +  +  LDL    +L       
Sbjct: 124 LT-TIPNGAFV-YLSKLKELWLRNNPIESIP-SYAFNRIPSLRRLDLGELKRL------- 173

Query: 618 PRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSN 677
                          S I            F  LS+                L  L+L+ 
Sbjct: 174 ---------------SYISEGA--------FEGLSN----------------LRYLNLAM 194

Query: 678 NKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSL 737
             L  ++P  L  +   L  L+L GN LS     +F G   LQ L + ++Q+      + 
Sbjct: 195 CNLR-EIPN-LTPLIK-LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251

Query: 738 ANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSF 777
            N + L  ++L +N +          +  L  + L  N +
Sbjct: 252 DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 20/167 (11%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNA-TEIPSG-LGNLTNLTHLNLSNAG 138
           L L    I   I + +    +  L+ L+L        + I  G    L+NL +LNL+   
Sbjct: 141 LWLRNNPIE-SIPSYA-FNRIPSLRRLDLGEL--KRLSYISEGAFEGLSNLRYLNLAMCN 196

Query: 139 FAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAP 198
              +IP  ++ + +L  LDLS +        L      G  Q L  L+ L++    I   
Sbjct: 197 LR-EIP-NLTPLIKLDELDLSGN-------HLSAIR-PGSFQGLMHLQKLWMIQSQIQV- 245

Query: 199 GIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQN 245
            IE   A  +L   L  ++L+   L+   H     L  L  I L  N
Sbjct: 246 -IER-NAFDNL-QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 97.7 bits (244), Expect = 2e-21
 Identities = 96/469 (20%), Positives = 157/469 (33%), Gaps = 90/469 (19%)

Query: 153 LVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLV-- 210
           + +LD+          +L +   + LL  L + + + LD   ++      C+ +SS +  
Sbjct: 5   IQSLDIQCE-------ELSDARWAELLPLLQQCQVVRLDDCGLTEAR---CKDISSALRV 54

Query: 211 -PKLRVLSLSSCYLSGPIHPSLAKL-----QSLSVICLDQNDLSSPVPEFLADFF----N 260
            P L  L+L S  L       + +        +  + L    L+      L+        
Sbjct: 55  NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT 114

Query: 261 LTSLNLSSSGLNGT----FPETILQVHT-LQTLDLSGNSLLRGSLPDF----PKNSSLRT 311
           L  L+LS + L         E +L     L+ L L   SL   S              + 
Sbjct: 115 LQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE 174

Query: 312 LMLSYANFS--GV--LPDSIGNLK-NLSRLDLARCNLS----GSIPTSLAKLTQLVYLDL 362
           L +S  + +  GV  L   + +    L  L L  C ++      +   +A    L  L L
Sbjct: 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234

Query: 363 SSNKF----VGPIPS--LHMSKNLTHLDLSNNALPGAISSTDWEHLS-------NLVYVD 409
            SNK     +  +    LH S  L  L +        I++     L        +L  + 
Sbjct: 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG----ITAKGCGDLCRVLRAKESLKELS 290

Query: 410 LRNNALNGSIPRSL-----FSIPMLQQLLLANNKFGGP-IPEFSNA--SYSALDTLDLSA 461
           L  N L     R L          L+ L + +  F       FS+       L  L +S 
Sbjct: 291 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 350

Query: 462 NRLEGPIPMSIFEL-----KNLKILMLSSNKL--NGTVQLA-AIQRLRNLIRLELSYNNL 513
           NRLE      + +        L++L L+   +  +    LA  +    +L  L+LS N L
Sbjct: 351 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

Query: 514 TVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGE 562
                GD+     V ++R   C L+             L L D   S E
Sbjct: 411 -----GDAGILQLVESVRQPGCLLEQ------------LVLYDIYWSEE 442

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 93.1 bits (232), Expect = 7e-20
 Identities = 87/486 (17%), Positives = 152/486 (31%), Gaps = 98/486 (20%)

Query: 355 TQLVYLDLSSNKF--VGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLS-------NL 405
             +  LD+   +         L + +    + L +      ++    + +S        L
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG----LTEARCKDISSALRVNPAL 58

Query: 406 VYVDLRNNALNGSIPRSLFSI-----PMLQQLLLANNKFGGP-IPEFSNA--SYSALDTL 457
             ++LR+N L       +          +Q+L L N    G      S+   +   L  L
Sbjct: 59  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118

Query: 458 DLSANRLEGPIPMSIFEL-----KNLKILMLSSNKL--NGTVQLA-AIQRLRNLIRLELS 509
            LS N L       + E        L+ L L    L       LA  ++   +   L +S
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178

Query: 510 YNNLTVN-----ASGDSSFPSQVRTLRLASCKL------KVIPNLKSQSKLFNLDLSDNQ 558
            N++          G    P Q+  L+L SC +       +   + S++ L  L L  N+
Sbjct: 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238

Query: 559 ISGEIPNWVWEI---GNGGLEYLNLSHNLLSSLQRPY---SISDLNLMTVLDLHSNQLQG 612
           +       +       +  L  L +    +++         +     +  L L  N+L  
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG- 297

Query: 613 NIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTI-FFSLSSNSITGVIPETICRA---- 667
                       D        ++           +    + S S T              
Sbjct: 298 ------------DEGARLLCETLL-----EPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340

Query: 668 KYLLVLDLSNNKLSG----------KMPTCLIKMSDILGVLNLRGNSLS----GTLSVTF 713
           ++LL L +SNN+L              P  +++      VL L    +S     +L+ T 
Sbjct: 341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLR------VLWLADCDVSDSSCSSLAATL 394

Query: 714 PGNCGLQTLDLNENQLGGTVPKSLA-----NCRKLEVLDLGNNKIRDTFPCWL----KNI 764
             N  L+ LDL+ N LG      L          LE L L +    +     L    K+ 
Sbjct: 395 LANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 454

Query: 765 SSLRVL 770
            SLRV+
Sbjct: 455 PSLRVI 460

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 81.5 bits (202), Expect = 3e-16
 Identities = 83/439 (18%), Positives = 137/439 (31%), Gaps = 94/439 (21%)

Query: 376 MSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLA 435
           MS ++  LD+    L  A  +     L     V L +  L  +  + + S        L 
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-------ALR 53

Query: 436 NNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFE-LKN----LKILMLSSNKLN- 489
            N               AL  L+L +N L       + + L+     ++ L L +  L  
Sbjct: 54  VN--------------PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 99

Query: 490 -GTVQLA-AIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQS 547
            G   L+  ++ L  L  L LS N L     GD+        L    C+L+         
Sbjct: 100 AGCGVLSSTLRTLPTLQELHLSDNLL-----GDAGLQLLCEGLLDPQCRLE--------- 145

Query: 548 KLFNLDLSDNQISGEIPNWVWE--IGNGGLEYLNLSHNLLS-----SLQRPYSISDLNLM 600
               L L    +S      +          + L +S+N ++      L +    S   L 
Sbjct: 146 ---KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQL- 201

Query: 601 TVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVI 660
             L L S  +                  +     + G + +  +     +L SN +  V 
Sbjct: 202 EALKLESCGV-----------------TSDNCRDLCGIVASKASLR-ELALGSNKLGDVG 243

Query: 661 PETICRA-----KYLLVLDLSNNKLSGKMPTCL---IKMSDILGVLNLRGNSLSGT---- 708
              +C         L  L +    ++ K    L   ++  + L  L+L GN L       
Sbjct: 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303

Query: 709 LSVTFP-GNCGLQTLDLNENQLGGTVPKSLA----NCRKLEVLDLGNNKIRDTFPCWL-- 761
           L  T     C L++L +             +      R L  L + NN++ D     L  
Sbjct: 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 363

Query: 762 ---KNISSLRVLVLRSNSF 777
              +  S LRVL L     
Sbjct: 364 GLGQPGSVLRVLWLADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 50.7 bits (122), Expect = 2e-06
 Identities = 49/302 (16%), Positives = 90/302 (29%), Gaps = 63/302 (20%)

Query: 670 LLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGT----LSVTFPGNCGLQTLDLN 725
           +  LD+   +LS      L+ +     V+ L    L+      +S     N  L  L+L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 726 ENQLGGTVPKSLANC-----RKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGS 780
            N+LG      +         K++ L L N  +          +SS     LR+      
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA--GC-GVLSS----TLRTL----- 112

Query: 781 ITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFE--LLT 838
                     P LQ + ++ N  G           + +     + Q   + +  E   L+
Sbjct: 113 ----------PTLQELHLSDNLLGD-------AGLQLLCEGLLDPQCRLEKLQLEYCSLS 155

Query: 839 DIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGR-LK----SLYGLNF 893
               + +           +++    F  +  S N+ +      + + LK     L  L  
Sbjct: 156 AASCEPLA---------SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 206

Query: 894 SQNAFG----GPIPSTIGNLQQLESLDLSMNHLSDQ-----IPIQLANLTFLSVLNLSHN 944
                       +   + +   L  L L  N L D       P  L   + L  L +   
Sbjct: 207 ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266

Query: 945 NL 946
            +
Sbjct: 267 GI 268

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 50.3 bits (121), Expect = 3e-06
 Identities = 70/411 (17%), Positives = 111/411 (27%), Gaps = 99/411 (24%)

Query: 575 LEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSS 634
           ++ L++    LS  +    +  L    V+ L    L                   +    
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-----------------TEARCKD 47

Query: 635 IPGDIGNSMNFTIFFSLSSNSITGVIPETICRA-----KYLLVLDLSNNKLSGKMPTCL- 688
           I   +  +       +L SN +  V    + +        +  L L N  L+G     L 
Sbjct: 48  ISSALRVNPALA-ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106

Query: 689 --IKMSDILGVLNLRGNSLSGT-----LSVTFPGNCGLQTLDLNENQLGGTVPKSLA--- 738
             ++    L  L+L  N L                C L+ L L    L     + LA   
Sbjct: 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166

Query: 739 -NCRKLEVLDLGNNKIRDT-----FPCWLKNISSLRVLVLRSNSFYGSITCR---ENDDS 789
                 + L + NN I +            +   L  L L S     S  CR       S
Sbjct: 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV-TSDNCRDLCGIVAS 225

Query: 790 WPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVT 849
              L+ + + SN  G                          DV    L            
Sbjct: 226 KASLRELALGSNKLG--------------------------DVGMAELCP---------- 249

Query: 850 WKGREMELVKILSIFTSIDFSRNNFDGP----IPEKIGRLKSLYGLNFSQNAFGGPIPST 905
                  L+   S   ++              +   +   +SL  L+ + N  G      
Sbjct: 250 ------GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303

Query: 906 IGNL-----QQLESLDLSMNHLSDQ----IPIQLANLTFLSVLNLSHNNLE 947
           +         QLESL +     +          LA   FL  L +S+N LE
Sbjct: 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 94.4 bits (235), Expect = 4e-21
 Identities = 63/293 (21%), Positives = 115/293 (39%), Gaps = 22/293 (7%)

Query: 231 LAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDL 290
              L +   I   +++++  V    AD   +T+L+   +G+  T  E +  ++ L  L+L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLEL 70

Query: 291 SGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTS 350
             N +    L      + +  L LS      V   +I  L+++  LDL    ++   P  
Sbjct: 71  KDNQI--TDLAPLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP-- 124

Query: 351 LAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDL 410
           LA L+ L  L L  N+    I  L    NL +L + N  +      T   +LS L  +  
Sbjct: 125 LAGLSNLQVLYLDLNQITN-ISPLAGLTNLQYLSIGNAQV---SDLTPLANLSKLTTLKA 180

Query: 411 RNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPM 470
            +N ++  I   L S+P L ++ L NN+    +   +N   S L  + L+   +      
Sbjct: 181 DDNKIS-DIS-PLASLPNLIEVHLKNNQISD-VSPLANT--SNLFIVTLTNQTITNQ--- 232

Query: 471 SIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSF 523
            +F   NL +  +        +  A I          L++N  +   +   +F
Sbjct: 233 PVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTF 285

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.4 bits (204), Expect = 4e-17
 Identities = 52/286 (18%), Positives = 106/286 (37%), Gaps = 25/286 (8%)

Query: 400 EHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDL 459
             L+N + +    + +  ++      +  +  L          I        + L  L+L
Sbjct: 16  PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT-IEGVQY--LNNLIGLEL 70

Query: 460 SANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASG 519
             N++    P+    L  +  L LS N L     ++AI  L+++  L+L+   +T + + 
Sbjct: 71  KDNQITDLAPLK--NLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQIT-DVTP 124

Query: 520 DSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGN-GGLEYL 578
            +     ++ L L   ++  I  L   + L  L + + Q+S   P     + N   L  L
Sbjct: 125 LAGLS-NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-----LANLSKLTTL 178

Query: 579 NLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIP-HPPRNAVLVDYSNNSFTSSIPG 637
               N +S +     ++ L  +  + L +NQ+    P     N  +V  +N + T+    
Sbjct: 179 KADDNKISDIS---PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQ--- 232

Query: 638 DIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGK 683
            +  + N  +   +   S   + P TI         +L+ N  S  
Sbjct: 233 PVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 77.8 bits (192), Expect = 2e-15
 Identities = 59/346 (17%), Positives = 116/346 (33%), Gaps = 73/346 (21%)

Query: 474 ELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLA 533
            L N   +    + +  TV  A    L  +  L      +T    G       +  L L 
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT-TIEGVQYLN-NLIGLELK 71

Query: 534 SCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYS 593
             ++  +  LK+ +K+  L+LS N +   +       G   ++ L+L+   ++ +     
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLK-NVSA---IAGLQSIKTLDLTSTQITDVT---P 124

Query: 594 ISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSS 653
           ++ L+ + VL L  NQ+                      ++I   +    N     S+ +
Sbjct: 125 LAGLSNLQVLYLDLNQI----------------------TNISP-LAGLTNLQYL-SIGN 160

Query: 654 NSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTF 713
             ++ + P  +     L  L   +NK+S           DI  + +L             
Sbjct: 161 AQVSDLTP--LANLSKLTTLKADDNKIS-----------DISPLASLPN----------- 196

Query: 714 PGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVL--- 770
                L  + L  NQ+  +    LAN   L ++ L N  I +    +  N+    V+   
Sbjct: 197 -----LIEVHLKNNQI--SDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGP 249

Query: 771 ---VLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCIT 813
               +   +   + T    + +W +   ++  S  F   V  K  T
Sbjct: 250 SGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQSVTFKNTT 295

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 73.2 bits (180), Expect = 4e-14
 Identities = 55/283 (19%), Positives = 104/283 (36%), Gaps = 35/283 (12%)

Query: 91  RIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAM 150
            I+   P  +L     +    +  N T+      +L  +T L+    G      +Q   +
Sbjct: 8   AINVIFPDPALANAIKIAAGKS--NVTDT-VTQADLDGITTLSAFGTGVTTIEGVQ--YL 62

Query: 151 TRLVTLDLSSSYSFGGPLKLENPNLSGL--LQNLAELRALYLDGVNISAPGIEWCQALSS 208
             L+ L+L  +             ++ L  L+NL ++  L L G  +         A++ 
Sbjct: 63  NNLIGLELKDN------------QITDLAPLKNLTKITELELSGNPLKNV-----SAIAG 105

Query: 209 LVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSS 268
           L   ++ L L+S  ++      LA L +L V+ LD N +++  P  LA   NL  L++ +
Sbjct: 106 L-QSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGN 160

Query: 269 SGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIG 328
           + ++      +  +  L TL    N +    +       +L  + L     S V P  + 
Sbjct: 161 AQVSDL--TPLANLSKLTTLKADDNKIS--DISPLASLPNLIEVHLKNNQISDVSP--LA 214

Query: 329 NLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPI 371
           N  NL  + L    ++         L     +   S   + P 
Sbjct: 215 NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPA 257

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.3 bits (157), Expect = 4e-11
 Identities = 47/246 (19%), Positives = 95/246 (38%), Gaps = 28/246 (11%)

Query: 534 SCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYS 593
              + VI    + +    +    + ++  +     +    G+  L+     +++++    
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKSNVTDTVT----QADLDGITTLSAFGTGVTTIE---G 58

Query: 594 ISDLNLMTVLDLHSNQLQ--GNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFT--IFF 649
           +  LN +  L+L  NQ+     + +  +   L + S N        ++            
Sbjct: 59  VQYLNNLIGLELKDNQITDLAPLKNLTKITEL-ELSGNPLK-----NVSAIAGLQSIKTL 112

Query: 650 SLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTL 709
            L+S  IT V P  +     L VL L  N+++   P   +     L  L++    +S  L
Sbjct: 113 DLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVS-DL 166

Query: 710 SVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRV 769
           +        L TL  ++N++  +    LA+   L  + L NN+I D  P  L N S+L +
Sbjct: 167 T-PLANLSKLTTLKADDNKI--SDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFI 221

Query: 770 LVLRSN 775
           + L + 
Sbjct: 222 VTLTNQ 227

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 48/258 (18%), Positives = 97/258 (37%), Gaps = 55/258 (21%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFA 140
           L+L +  I+    + +PL +L  +  L L+ N      + S +  L ++  L+L++    
Sbjct: 68  LELKDNQIT----DLAPLKNLTKITELELSGN--PLKNV-SAIAGLQSIKTLDLTSTQIT 120

Query: 141 GQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGI 200
              P                                  L  L+ L+ LYLD   I+    
Sbjct: 121 DVTP----------------------------------LAGLSNLQVLYLDLNQITN--- 143

Query: 201 EWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFN 260
                L+ L   L+ LS+ +  +S      LA L  L+ +  D N +S      LA   N
Sbjct: 144 --ISPLAGL-TNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKISD--ISPLASLPN 196

Query: 261 LTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFS 320
           L  ++L ++ +  +    +     L  + L+  ++   + P F  N+ +   ++   + +
Sbjct: 197 LIEVHLKNNQI--SDVSPLANTSNLFIVTLTNQTIT--NQPVFYNNNLVVPNVVKGPSGA 252

Query: 321 GVLPDSIGNLKNLSRLDL 338
            + P +I +    +  +L
Sbjct: 253 PIAPATISDNGTYASPNL 270

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 37/229 (16%), Positives = 77/229 (33%), Gaps = 41/229 (17%)

Query: 719 LQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFY 778
              +   ++ +  TV    A+   +  L      +       ++ +++L  L L+ N   
Sbjct: 21  AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQ-- 74

Query: 779 GSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLT 838
             IT      +   +  ++++ N          + +  A                   L 
Sbjct: 75  --ITDLAPLKNLTKITELELSGNP---------LKNVSA----------------IAGLQ 107

Query: 839 DIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAF 898
            I   D+ +   +  ++  +  LS    +    N      P  +  L +L  L+      
Sbjct: 108 SIKTLDLTS--TQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQV 163

Query: 899 GGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLE 947
               P  + NL +L +L    N +SD  P  LA+L  L  ++L +N + 
Sbjct: 164 SDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS 208

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 92.5 bits (230), Expect = 3e-20
 Identities = 55/252 (21%), Positives = 101/252 (40%), Gaps = 16/252 (6%)

Query: 371 IPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFS-IPML 429
           IPS  +++ +  LDLSNN +   IS++D +   NL  + L +N +N +I    FS +  L
Sbjct: 46  IPS-GLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSL 102

Query: 430 QQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIF-ELKNLKILMLSSNKL 488
           + L L+ N     +        S+L  L+L  N  +     S+F  L  L+IL + +   
Sbjct: 103 EHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT 161

Query: 489 NGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPN--LKSQ 546
              +Q      L  L  LE+  ++L             V  L L   +  ++    +   
Sbjct: 162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT 221

Query: 547 SKLFNLDLSDNQISG----EIPNWVWE--IGNGGLEYLNLSHNLLSSLQRPYSISDLNLM 600
           S +  L+L D  +      E+        I       + ++   L  +     ++ ++ +
Sbjct: 222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV--MKLLNQISGL 279

Query: 601 TVLDLHSNQLQG 612
             L+   NQL+ 
Sbjct: 280 LELEFSRNQLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 87.1 bits (216), Expect = 2e-18
 Identities = 50/272 (18%), Positives = 105/272 (38%), Gaps = 19/272 (6%)

Query: 521 SSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYL 578
           S     V++L L++ ++  I N  L+    L  L L+ N I+  I    +    G LE+L
Sbjct: 48  SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFS-SLGSLEHL 105

Query: 579 NLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQ----GNIPHPPRNAVLVDYSNNSFTSS 634
           +LS+N LS+L        L+ +T L+L  N  +     ++        ++   N    + 
Sbjct: 106 DLSYNYLSNLS-SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK 164

Query: 635 IPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDI 694
           I       + F     + ++ +    P+++   + +  L L   +    +    + ++  
Sbjct: 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSS 223

Query: 695 LGVLNLRGN--------SLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVL 746
           +  L LR           LS   + +       + + + +  L   V K L     L  L
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLEL 282

Query: 747 DLGNNKIRDTFPCWLKNISSLRVLVLRSNSFY 778
           +   N+++         ++SL+ + L +N + 
Sbjct: 283 EFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 86.7 bits (215), Expect = 3e-18
 Identities = 51/273 (18%), Positives = 102/273 (37%), Gaps = 27/273 (9%)

Query: 183 AELRALYLDGVNISA--PGIEWCQALSSLVPKLRVLSLSSCYLSGPIHP-SLAKLQSLSV 239
             +++L L    I+           L      L+ L L+S  ++  I   S + L SL  
Sbjct: 52  EAVKSLDLSNNRITYISNS-----DLQRC-VNLQALVLTSNGINT-IEEDSFSSLGSLEH 104

Query: 240 ICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQ-VHTLQTLDLSGNSLLRG 298
           + L  N LS+    +     +LT LNL  +        ++   +  LQ L +        
Sbjct: 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT- 163

Query: 299 SLPD--FPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQ 356
            +    F   + L  L +  ++     P S+ +++N+S L L        +   +   + 
Sbjct: 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS 223

Query: 357 LVYLDLSSNKF---------VGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVY 407
           +  L+L               G   SL       ++ +++ +L   +   +   +S L+ 
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN--QISGLLE 281

Query: 408 VDLRNNALNGSIPRSLF-SIPMLQQLLLANNKF 439
           ++   N L  S+P  +F  +  LQ++ L  N +
Sbjct: 282 LEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 77.5 bits (191), Expect = 4e-15
 Identities = 58/294 (19%), Positives = 101/294 (34%), Gaps = 45/294 (15%)

Query: 104 LQSLNLAFNMFNATEIPSG-LGNLTNLTHLNLSNAGFAGQIPIQV-SAMTRLVTLDLSSS 161
           ++SL+L+ N    T I +  L    NL  L L++ G    I     S++  L  LDLS  
Sbjct: 54  VKSLDLSNN--RITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSY- 109

Query: 162 YSFGGPLKLENPNL-----SGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVL 216
                       N      S   + L+ L  L L G       +      S L  KL++L
Sbjct: 110 ------------NYLSNLSSSWFKPLSSLTFLNLLGNPYKT--LGETSLFSHL-TKLQIL 154

Query: 217 SLSSCYLSGPIHP-SLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTF 275
            + +      I     A L  L  + +D +DL S  P+ L    N++ L L         
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214

Query: 276 PETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSR 335
              +    +++ L+L    L      +     +                +S+        
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGET----------------NSLIKKFTFRN 258

Query: 336 LDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVG-PIPSLHMSKNLTHLDLSNN 388
           + +   +L   +   L +++ L+ L+ S N+    P        +L  + L  N
Sbjct: 259 VKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 53/326 (16%), Positives = 100/326 (30%), Gaps = 51/326 (15%)

Query: 624 VDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGK 683
              S+ S  S IP  +  +        LS+N IT +    + R   L  L L++N ++  
Sbjct: 36  CKGSSGSLNS-IPSGLTEA---VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI 91

Query: 684 MPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSL-ANCRK 742
                  +   L  L+L  N LS   S  F     L  L+L  N        SL ++  K
Sbjct: 92  EEDSFSSLGS-LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150

Query: 743 LEVLDLGNN-KIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASN 801
           L++L +GN              ++ L  L + ++         ++  S   +  + +   
Sbjct: 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL--QSYEPKSLKSIQNVSHLILHMK 208

Query: 802 NFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKI- 860
                                        ++  ++ + +              +EL    
Sbjct: 209 QH-----------------------ILLLEIFVDVTSSV------------ECLELRDTD 233

Query: 861 LSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMN 920
           L  F   + S    +  I     +  +   +  +  +    +   +  +  L  L+ S N
Sbjct: 234 LDTFHFSELSTGETNSLI-----KKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRN 287

Query: 921 HLSDQIPIQLANLTFLSVLNLSHNNL 946
            L          LT L  + L  N  
Sbjct: 288 QLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 40/239 (16%), Positives = 72/239 (30%), Gaps = 52/239 (21%)

Query: 100 SLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLS 159
            L  L  LNL  N +      S   +LT L  L + N             M     +   
Sbjct: 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN-------------MDTFTKIQ-- 166

Query: 160 SSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLS 219
                                 L  L  L +D  ++ +      ++L S+   +  L L 
Sbjct: 167 ----------------RKDFAGLTFLEELEIDASDLQSY---EPKSLKSI-QNVSHLILH 206

Query: 220 SCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETI 279
                  +   +    S+  + L   DL +         F+ + L   S+G   +     
Sbjct: 207 MKQHILLLEIFVDVTSSVECLELRDTDLDT---------FHFSEL---STGETNSLI--- 251

Query: 280 LQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDL 338
            +  T + + ++  SL +  +    + S L  L  S      V       L +L ++ L
Sbjct: 252 -KKFTFRNVKITDESLFQV-MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWL 308

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 94.8 bits (235), Expect = 4e-20
 Identities = 61/285 (21%), Positives = 120/285 (42%), Gaps = 26/285 (9%)

Query: 400 EHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSN-ASYSALDTLD 458
           +  +  +  +L+  ++  ++      +  + Q++  N+     I           +  L 
Sbjct: 18  DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD----IKSVQGIQYLPNVTKLF 71

Query: 459 LSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNAS 518
           L+ N+L    P++   LKNL  L L  NK+     L++++ L+ L  L L +N ++ + +
Sbjct: 72  LNGNKLTDIKPLT--NLKNLGWLFLDENKIK---DLSSLKDLKKLKSLSLEHNGIS-DIN 125

Query: 519 GDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYL 578
           G    P Q+ +L L + K+  I  L   +KL  L L DNQIS +I       G   L+ L
Sbjct: 126 GLVHLP-QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-DIVPLA---GLTKLQNL 180

Query: 579 NLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGD 638
            LS N +S L+   +++ L  + VL+L S +      +   N V+ +   N+      G 
Sbjct: 181 YLSKNHISDLR---ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD-----GS 232

Query: 639 IGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGK 683
           +      +        ++   +PE      ++    ++  K   +
Sbjct: 233 LVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 94.0 bits (233), Expect = 8e-20
 Identities = 53/318 (16%), Positives = 108/318 (33%), Gaps = 68/318 (21%)

Query: 478 LKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKL 537
           +   +  S  +    Q+         I+  L   ++T +A   +   S +  +   +  +
Sbjct: 1   MGETITVSTPIK---QIFPDDAFAETIKDNLKKKSVT-DAVTQNELNS-IDQIIANNSDI 55

Query: 538 KVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDL 597
           K +  ++    +  L L+ N+++ +I           L +L L  N +  L    S+ DL
Sbjct: 56  KSVQGIQYLPNVTKLFLNGNKLT-DIKPLT---NLKNLGWLFLDENKIKDLS---SLKDL 108

Query: 598 NLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSIT 657
             +  L L  N +                      S I G + +         L +N IT
Sbjct: 109 KKLKSLSLEHNGI----------------------SDING-LVHLPQLESL-YLGNNKIT 144

Query: 658 GVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNC 717
            +    + R   L  L L +N++S           DI+ +  L                 
Sbjct: 145 DI--TVLSRLTKLDTLSLEDNQIS-----------DIVPLAGLTK--------------- 176

Query: 718 GLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSF 777
            LQ L L++N +  +  ++LA  + L+VL+L + +  +       N+     +     S 
Sbjct: 177 -LQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

Query: 778 YGSITCRENDDSWPMLQI 795
             +     +D  +    +
Sbjct: 234 V-TPEIISDDGDYEKPNV 250

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.4 bits (195), Expect = 2e-15
 Identities = 46/252 (18%), Positives = 90/252 (35%), Gaps = 28/252 (11%)

Query: 121 SGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQ 180
                       NL        +    + +  +  +  ++S        +++  + G+ Q
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNS-------DIKS--VQGI-Q 62

Query: 181 NLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVI 240
            L  +  L+L+G  ++   I+    L++L   L  L L    +   +   L  L+ L  +
Sbjct: 63  YLPNVTKLFLNGNKLT--DIK---PLTNL-KNLGWLFLDENKIKD-LSS-LKDLKKLKSL 114

Query: 241 CLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSL 300
            L+ N +S      L     L SL L ++ +  T    + ++  L TL L  N +    +
Sbjct: 115 SLEHNGISDI--NGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQI--SDI 168

Query: 301 PDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYL 360
                 + L+ L LS  + S +   ++  LKNL  L+L             + L     +
Sbjct: 169 VPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

Query: 361 DLSSNKFVGPIP 372
             +    V P  
Sbjct: 227 KNTDGSLVTPEI 238

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.7 bits (162), Expect = 3e-11
 Identities = 53/219 (24%), Positives = 78/219 (35%), Gaps = 37/219 (16%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFA 140
           +  +   I     +   +  L  +  L L  N    T+I   L NL NL  L L      
Sbjct: 48  IIANNSDIK----SVQGIQYLPNVTKLFLNGN--KLTDI-KPLTNLKNLGWLFLDE---- 96

Query: 141 GQIP--IQVSAMTRLVTLDLSSSYSFGGPLKLENP--NLSGLLQNLAELRALYLDGVNIS 196
            +I     +  + +L +L L             N   +++G L +L +L +LYL    I+
Sbjct: 97  NKIKDLSSLKDLKKLKSLSLEH-----------NGISDING-LVHLPQLESLYLGNNKIT 144

Query: 197 APGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLA 256
                    LS L  KL  LSL    +S      LA L  L  + L +N +S      LA
Sbjct: 145 DI-----TVLSRL-TKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHISD--LRALA 194

Query: 257 DFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSL 295
              NL  L L S             +    T+  +  SL
Sbjct: 195 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.0 bits (155), Expect = 2e-10
 Identities = 52/306 (16%), Positives = 98/306 (32%), Gaps = 74/306 (24%)

Query: 651 LSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLS 710
             S  I  + P+        +  +L    ++        +++  +  +    + +    S
Sbjct: 6   TVSTPIKQIFPDDAF--AETIKDNLKKKSVTD--AVTQNELNS-IDQIIANNSDIK---S 57

Query: 711 VTFPGNC-GLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRV 769
           V        +  L LN N+L  T  K L N + L  L L  NKI+D     LK++  L+ 
Sbjct: 58  VQGIQYLPNVTKLFLNGNKL--TDIKPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKS 113

Query: 770 LVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNF 829
           L L  N     I+        P L+ + + +N                            
Sbjct: 114 LSLEHNG----ISDINGLVHLPQLESLYLGNNK--------------------------- 142

Query: 830 KDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLY 889
                  +TDI                ++  L+   ++    N     +P  +  L  L 
Sbjct: 143 -------ITDI---------------TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 178

Query: 890 GLNFSQNAFGGPIP--STIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLE 947
            L  S+N     I     +  L+ L+ L+L      ++     +NL   + +  +  +L 
Sbjct: 179 NLYLSKN----HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234

Query: 948 GNIPVS 953
               +S
Sbjct: 235 TPEIIS 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.8 bits (113), Expect = 2e-05
 Identities = 37/231 (16%), Positives = 73/231 (31%), Gaps = 45/231 (19%)

Query: 719 LQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFY 778
           +         +    P       +    +L    + D        ++S+  ++  ++   
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD-- 54

Query: 779 GSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLT 838
             I   +     P +  + +  N          +T                   + + L 
Sbjct: 55  --IKSVQGIQYLPNVTKLFLNGNK---------LTDI-----------KPLT--NLKNLG 90

Query: 839 DIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAF 898
            +F  +      K +++  +K L    S+    N         +  L  L  L    N  
Sbjct: 91  WLFLDEN-----KIKDLSSLKDLKKLKSLSLEHNGIS--DINGLVHLPQLESLYLGNN-- 141

Query: 899 GGPI--PSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLE 947
              I   + +  L +L++L L  N +SD +P  LA LT L  L LS N++ 
Sbjct: 142 --KITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 89.0 bits (221), Expect = 2e-19
 Identities = 51/281 (18%), Positives = 98/281 (34%), Gaps = 47/281 (16%)

Query: 329 NLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNN 388
                 + +L + +++ ++     +L  +  +  +++  +  +  +    N+T L L+ N
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGN 78

Query: 389 ALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSN 448
            L      TD + L+NL                       L  L L  NK    + + S+
Sbjct: 79  KL------TDIKPLANL---------------------KNLGWLFLDENK----VKDLSS 107

Query: 449 -ASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLE 507
                 L +L L  N +     +    L  L+ L L +NK+     +  + RL  L  L 
Sbjct: 108 LKDLKKLKSLSLEHNGISDINGLV--HLPQLESLYLGNNKIT---DITVLSRLTKLDTLS 162

Query: 508 LSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWV 567
           L  N ++ +    +     ++ L L+   +  +  L     L  L+L   +   +  N  
Sbjct: 163 LEDNQIS-DIVPLAGLTK-LQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINH- 219

Query: 568 WEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSN 608
                  L   N   N   SL  P  ISD       ++  +
Sbjct: 220 ----QSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 80.1 bits (198), Expect = 2e-16
 Identities = 58/238 (24%), Positives = 108/238 (45%), Gaps = 21/238 (8%)

Query: 400 EHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSN-ASYSALDTLD 458
           +  +  +  +L+  ++  ++      +  + Q++  N+     I           +  L 
Sbjct: 21  DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD----IKSVQGIQYLPNVTKLF 74

Query: 459 LSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNAS 518
           L+ N+L    P++   LKNL  L L  NK+     L++++ L+ L  L L +N ++ + +
Sbjct: 75  LNGNKLTDIKPLA--NLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGIS-DIN 128

Query: 519 GDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYL 578
           G    P Q+ +L L + K+  I  L   +KL  L L DNQIS +I       G   L+ L
Sbjct: 129 GLVHLP-QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-DIVPLA---GLTKLQNL 183

Query: 579 NLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIP 636
            LS N +S L+   +++ L  + VL+L S +      +   N V+ +   N+  S + 
Sbjct: 184 YLSKNHISDLR---ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 51/297 (17%), Positives = 102/297 (34%), Gaps = 67/297 (22%)

Query: 481 LMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVI 540
            +     +    Q+ +       I+  L   ++T +A   +   S +  +   +  +K +
Sbjct: 7   TITVPTPIK---QIFSDDAFAETIKDNLKKKSVT-DAVTQNELNS-IDQIIANNSDIKSV 61

Query: 541 PNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLM 600
             ++    +  L L+ N+++ +I           L +L L  N +  L    S+ DL  +
Sbjct: 62  QGIQYLPNVTKLFLNGNKLT-DIKPLA---NLKNLGWLFLDENKVKDLS---SLKDLKKL 114

Query: 601 TVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVI 660
             L L  N +                      S I G + +         L +N IT + 
Sbjct: 115 KSLSLEHNGI----------------------SDING-LVHLPQLES-LYLGNNKITDI- 149

Query: 661 PETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQ 720
              + R   L  L L +N++           SDI+ +  L                  LQ
Sbjct: 150 -TVLSRLTKLDTLSLEDNQI-----------SDIVPLAGLT----------------KLQ 181

Query: 721 TLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSF 777
            L L++N +  +  ++LA  + L+VL+L + +  +       N+     +     S 
Sbjct: 182 NLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.2 bits (180), Expect = 4e-14
 Identities = 55/284 (19%), Positives = 108/284 (38%), Gaps = 51/284 (17%)

Query: 427 PMLQQLLLANNKFGGPIPEFSN-ASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSS 485
           P+  + +         I +  +  +++     +L    +   +  +  EL ++  ++ ++
Sbjct: 2   PLGSETITVPTP----IKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANN 55

Query: 486 NKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKS 545
           + +     +  IQ L N+ +L L+ N LT +    ++  + +  L L   K+K + +LK 
Sbjct: 56  SDIK---SVQGIQYLPNVTKLFLNGNKLT-DIKPLANLKN-LGWLFLDENKVKDLSSLKD 110

Query: 546 QSKLFNLDLSDNQISGEIPNWVWEIGN-GGLEYLNLSHNLLSSLQRPYSISDLNLMTVLD 604
             KL +L L  N IS +I      + +   LE L L +N ++ +     +S L  +  L 
Sbjct: 111 LKKLKSLSLEHNGIS-DING----LVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLS 162

Query: 605 LHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFT--IFFSLSSNSITGVIPE 662
           L  NQ+                           DI      T      LS N I+ +   
Sbjct: 163 LEDNQIS--------------------------DIVPLAGLTKLQNLYLSKNHISDL--R 194

Query: 663 TICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLS 706
            +   K L VL+L + +   K       +     V N  G+ ++
Sbjct: 195 ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.0 bits (164), Expect = 4e-12
 Identities = 46/250 (18%), Positives = 90/250 (36%), Gaps = 28/250 (11%)

Query: 121 SGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQ 180
                       NL        +    + +  +  +  ++S        +++  + G+ Q
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNS-------DIKS--VQGI-Q 65

Query: 181 NLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVI 240
            L  +  L+L+G  ++   I+    L++L   L  L L    +   +   L  L+ L  +
Sbjct: 66  YLPNVTKLFLNGNKLTD--IK---PLANL-KNLGWLFLDENKVKD-LSS-LKDLKKLKSL 117

Query: 241 CLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSL 300
            L+ N +S      L     L SL L ++ +  T    + ++  L TL L  N +    +
Sbjct: 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS--DI 171

Query: 301 PDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYL 360
                 + L+ L LS  + S +   ++  LKNL  L+L             + L     +
Sbjct: 172 VPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229

Query: 361 DLSSNKFVGP 370
             +    V P
Sbjct: 230 KNTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 55/258 (21%), Positives = 94/258 (36%), Gaps = 55/258 (21%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFA 140
           +  +   I     +   +  L  +  L L  N    T+I   L NL NL  L L      
Sbjct: 51  IIANNSDIK----SVQGIQYLPNVTKLFLNGN--KLTDI-KPLANLKNLGWLFLDEN--- 100

Query: 141 GQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGI 200
                +V         DLSS                  L++L +L++L L+   IS   I
Sbjct: 101 -----KVK--------DLSS------------------LKDLKKLKSLSLEHNGISD--I 127

Query: 201 EWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFN 260
                L  L P+L  L L +  ++      L++L  L  + L+ N +S  VP  LA    
Sbjct: 128 N---GLVHL-PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTK 179

Query: 261 LTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFS 320
           L +L LS + ++      +  +  L  L+L     L   +          T+  +  +  
Sbjct: 180 LQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL- 236

Query: 321 GVLPDSIGNLKNLSRLDL 338
            V P+ I +  +  + ++
Sbjct: 237 -VTPEIISDDGDYEKPNV 253

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 49/235 (20%), Positives = 92/235 (39%), Gaps = 34/235 (14%)

Query: 91  RIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAM 150
           ++ +  PL +LK L  L L  N     ++ S L +L  L  L+L + G +    +    +
Sbjct: 79  KLTDIKPLANLKNLGWLFLDENKV--KDL-SSLKDLKKLKSLSLEHNGISDINGL--VHL 133

Query: 151 TRLVTLDLSSSYSFGGPLKLENPNLSGL--LQNLAELRALYLDGVNISAPGIEWCQALSS 208
            +L +L L             N  ++ +  L  L +L  L L+   IS         L+ 
Sbjct: 134 PQLESLYLG------------NNKITDITVLSRLTKLDTLSLEDNQISD-----IVPLAG 176

Query: 209 LVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSS 268
           L  KL+ L LS  ++S     +LA L++L V+ L   +  +      ++     ++    
Sbjct: 177 L-TKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN-- 231

Query: 269 SGLNGTF--PETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSG 321
              +G+   PE I      +  ++  +     +   F     + T+  + A F G
Sbjct: 232 --TDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPV-TIGKAKARFHG 283

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 40/253 (15%), Positives = 83/253 (32%), Gaps = 49/253 (19%)

Query: 698 LNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTF 757
            NL+  S++    VT      +  +  N + +     + +     +  L L  NK+ D  
Sbjct: 29  DNLKKKSVTDA--VTQNELNSIDQIIANNSDI--KSVQGIQYLPNVTKLFLNGNKLTDIK 84

Query: 758 PCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKA 817
           P  L N+ +L  L L  N     +    +      L+ + +  N          I+    
Sbjct: 85  P--LANLKNLGWLFLDENK----VKDLSSLKDLKKLKSLSLEHNG---------ISDING 129

Query: 818 MMSDEDEAQSNFKDVHFE--LLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFD 875
           +           + ++     +TDI                ++  L+   ++    N   
Sbjct: 130 L-----VHLPQLESLYLGNNKITDI---------------TVLSRLTKLDTLSLEDNQIS 169

Query: 876 GPIPEKIGRLKSLYGLNFSQNAFGGPIP--STIGNLQQLESLDLSMNHLSDQIPIQLANL 933
             +P  +  L  L  L  S+N     I     +  L+ L+ L+L      ++     +NL
Sbjct: 170 DIVP--LAGLTKLQNLYLSKN----HISDLRALAGLKNLDVLELFSQECLNKPINHQSNL 223

Query: 934 TFLSVLNLSHNNL 946
              + +  +  +L
Sbjct: 224 VVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 43/258 (16%), Positives = 81/258 (31%), Gaps = 56/258 (21%)

Query: 719 LQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFY 778
               +L +  +   V         ++ +   N+ I+      ++ + ++  L L  N   
Sbjct: 26  TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNK-- 79

Query: 779 GSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFK-----DVH 833
             +T  +   +   L  + +  N          +            +  + K      + 
Sbjct: 80  --LTDIKPLANLKNLGWLFLDENK---------VKDL--------SSLKDLKKLKSLSLE 120

Query: 834 FELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNF 893
              ++DI                 +  L    S+    N         + RL  L  L+ 
Sbjct: 121 HNGISDI---------------NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSL 163

Query: 894 SQNAFGGPIP--STIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIP 951
             N     I     +  L +L++L LS NH+SD     LA L  L VL L       N P
Sbjct: 164 EDN----QISDIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECL-NKP 216

Query: 952 VSTQLQSFSPTSFEGNEG 969
           ++ Q     P + +  +G
Sbjct: 217 INHQSNLVVPNTVKNTDG 234

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 83.5 bits (207), Expect = 2e-18
 Identities = 31/186 (16%), Positives = 69/186 (37%), Gaps = 10/186 (5%)

Query: 232 AKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLS 291
           +  ++     L Q+  ++      A   +LT + L++  +       I   H ++ L ++
Sbjct: 20  STFKAYLNGLLGQSSTANITE---AQMNSLTYITLANINVTDL--TGIEYAHNIKDLTIN 74

Query: 292 GNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSL 351
                  +       S+L  L +   + +     ++  L +L+ LD++      SI T +
Sbjct: 75  NIHA--TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 352 AKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLR 411
             L ++  +DLS N  +  I  L     L  L++  + +         E    L  +   
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGV---HDYRGIEDFPKLNQLYAF 189

Query: 412 NNALNG 417
           +  + G
Sbjct: 190 SQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 77.3 bits (191), Expect = 3e-16
 Identities = 33/212 (15%), Positives = 73/212 (34%), Gaps = 36/212 (16%)

Query: 352 AKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISS-TDWEHLSNLVYVDL 410
           +     +   L  +     I    M  +LT++ L+N      ++  T  E+  N+  + +
Sbjct: 20  STFKAYLNGLLGQSS-TANITEAQM-NSLTYITLANIN----VTDLTGIEYAHNIKDLTI 73

Query: 411 RNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPM 470
            N            +   +  L                   S L+ L +    +      
Sbjct: 74  NNIHAT--------NYNPISGL-------------------SNLERLRIMGKDVTSDKIP 106

Query: 471 SIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTL 530
           ++  L +L +L +S +  + +  L  I  L  +  ++LSYN    +     + P ++++L
Sbjct: 107 NLSGLTSLTLLDISHSAHDDS-ILTKINTLPKVNSIDLSYNGAITDIMPLKTLP-ELKSL 164

Query: 531 RLASCKLKVIPNLKSQSKLFNLDLSDNQISGE 562
            +    +     ++   KL  L      I G+
Sbjct: 165 NIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 28/198 (14%), Positives = 71/198 (35%), Gaps = 22/198 (11%)

Query: 125 NLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAE 184
                 +  L  +  A    I  + M  L  + L++         + +  L+G+ +    
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANI-------NVTD--LTGI-EYAHN 67

Query: 185 LRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQ 244
           ++ L ++ ++ +         +S L   L  L +    ++    P+L+ L SL+++ +  
Sbjct: 68  IKDLTINNIHAT--NYN---PISGL-SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 245 NDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFP 304
           +     +   +     + S++LS +G   T    +  +  L++L++  + +         
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYNGAI-TDIMPLKTLPELKSLNIQFDGV--HDYRGIE 178

Query: 305 KNSSLRTLMLSYANFSGV 322
               L  L        G 
Sbjct: 179 DFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 25/169 (14%), Positives = 62/169 (36%), Gaps = 22/169 (13%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFA 140
           + L+  +++    + + +     ++ L +     +AT   + +  L+NL  L +      
Sbjct: 49  ITLANINVT----DLTGIEYAHNIKDLTINNI--HATNY-NPISGLSNLERLRIMGKDVT 101

Query: 141 GQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGI 200
                 +S +T L  LD+S S         ++  L+  +  L ++ ++ L         I
Sbjct: 102 SDKIPNLSGLTSLTLLDISHS-------AHDDSILTK-INTLPKVNSIDLSYNG----AI 149

Query: 201 EWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSS 249
                L +L P+L+ L++    +       +     L+ +      +  
Sbjct: 150 TDIMPLKTL-PELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 8e-09
 Identities = 20/183 (10%), Positives = 56/183 (30%), Gaps = 35/183 (19%)

Query: 575 LEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSS 634
           L Y+ L++  ++ L     I   + +  L +++                           
Sbjct: 46  LTYITLANINVTDLT---GIEYAHNIKDLTINNIHAT----------------------- 79

Query: 635 IPGDIGNSMNFT--IFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMS 692
              +       +      +    +T      +     L +LD+S++     + T +  + 
Sbjct: 80  ---NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136

Query: 693 DILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNK 752
             +  ++L  N     +         L++L++  + +     + + +  KL  L   +  
Sbjct: 137 K-VNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV--HDYRGIEDFPKLNQLYAFSQT 192

Query: 753 IRD 755
           I  
Sbjct: 193 IGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 19/126 (15%), Positives = 48/126 (38%), Gaps = 6/126 (4%)

Query: 650 SLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTL 709
           ++++   T   P  I     L  L +    ++      L  ++  L +L++  ++   ++
Sbjct: 72  TINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTS-LTLLDISHSAHDDSI 128

Query: 710 SVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRV 769
                    + ++DL+ N    T    L    +L+ L++  + + D     +++   L  
Sbjct: 129 LTKINTLPKVNSIDLSYNGAI-TDIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQ 185

Query: 770 LVLRSN 775
           L   S 
Sbjct: 186 LYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 26/211 (12%), Positives = 62/211 (29%), Gaps = 31/211 (14%)

Query: 472 IFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLR 531
                  K  +      + T  +   Q + +L  + L+  N+T + +G       ++ L 
Sbjct: 16  NIPDSTFKAYLNGLLGQSSTANITEAQ-MNSLTYITLANINVT-DLTGIEYAH-NIKDLT 72

Query: 532 LASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRP 591
           + +        +   S L  L +    ++ +    +  + +  L  L++SH+        
Sbjct: 73  INNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTS--LTLLDISHSAHDDSI-L 129

Query: 592 YSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSL 651
             I+ L  +  +DL  N    +I                        +          ++
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDIMP----------------------LKTLPELKS-LNI 166

Query: 652 SSNSITGVIPETICRAKYLLVLDLSNNKLSG 682
             + +       I     L  L   +  + G
Sbjct: 167 QFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 865 TSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSD 924
             +  +  +     P  I  L +L  L              +  L  L  LD+S +   D
Sbjct: 69  KDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 925 QIPIQLANLTFLSVLNLSHNNLEGNI 950
            I  ++  L  ++ ++LS+N    +I
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 22/158 (13%), Positives = 55/158 (34%), Gaps = 21/158 (13%)

Query: 650 SLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDI-----LGVLNLRGNS 704
            L  +S   +   T  +   L  + L+N  ++         ++ I     +  L +    
Sbjct: 29  LLGQSSTANI---TEAQMNSLTYITLANINVT--------DLTGIEYAHNIKDLTINNIH 77

Query: 705 LSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNI 764
            +    ++  G   L+ L +    +      +L+    L +LD+ ++   D+    +  +
Sbjct: 78  ATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 765 SSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNN 802
             +  + L  N     I   +     P L+ ++I  + 
Sbjct: 136 PKVNSIDLSYNGAITDIMPLKT---LPELKSLNIQFDG 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 865 TSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSD 924
           T +D S +  D  I  KI  L  +  ++ S N     I   +  L +L+SL++  + + D
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD 173

Query: 925 QIPIQLANLTFLSVLNLSHNNL 946
                + +   L+ L      +
Sbjct: 174 YRG--IEDFPKLNQLYAFSQTI 193

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 83.9 bits (208), Expect = 8e-18
 Identities = 58/235 (24%), Positives = 92/235 (39%), Gaps = 36/235 (15%)

Query: 284 TLQTLDLSGNSLLRGSLP--DFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARC 341
           + + LDLS N L    L    F     L+ L LS      +   +  +L +LS L L   
Sbjct: 29  STKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 342 NLSGSIPTSL-AKLTQLVYLDLSSNKFV----GPIPSLHMSKNLTHLDLSNNALPGAISS 396
            +  S+     + L+ L  L             PI  L     L  L++++N +      
Sbjct: 87  PIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK---TLKELNVAHNLIQSFKLP 142

Query: 397 TDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDT 456
             + +L+NL ++DL +N +  SI  +     +L Q+ L N                    
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQ-SIYCTDLR--VLHQMPLLNLS------------------ 181

Query: 457 LDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYN 511
           LDLS N +   I    F+   LK L L +N+L  +V      RL +L ++ L  N
Sbjct: 182 LDLSLNPMNF-IQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.4 bits (186), Expect = 7e-15
 Identities = 58/234 (24%), Positives = 86/234 (36%), Gaps = 38/234 (16%)

Query: 454 LDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNL 513
              LDLS N L      S F    L++L LS  ++  T++  A Q L +L  L L+ N +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI 88

Query: 514 TVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNG 573
              A G  S  S ++ L      L  +      +      L                   
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLE-----NFPIG-HLKT----------------- 125

Query: 574 GLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPH---------PPRNAVLV 624
            L+ LN++HNL+ S + P   S+L  +  LDL SN++Q +I           P  N  L 
Sbjct: 126 -LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSL- 182

Query: 625 DYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNN 678
           D S N     I       +      +L +N +  V      R   L  + L  N
Sbjct: 183 DLSLNPMN-FIQPGAFKEIRLKE-LALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.1 bits (154), Expect = 7e-11
 Identities = 53/255 (20%), Positives = 91/255 (35%), Gaps = 54/255 (21%)

Query: 502 NLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQI 559
           +   L+LS+N L    S       +++ L L+ C+++ I +   +S S L  L L+ N I
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 560 SGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPR 619
              +    +  G   L+ L      L+SL+  + I  L  +  L++  N +Q +   P  
Sbjct: 89  Q-SLALGAFS-GLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQ-SFKLP-- 142

Query: 620 NAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNK 679
                                       F +L++                L  LDLS+NK
Sbjct: 143 --------------------------EYFSNLTN----------------LEHLDLSSNK 160

Query: 680 L---SGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKS 736
           +          L +M  +   L+L  N ++      F     L+ L L+ NQL       
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGI 219

Query: 737 LANCRKLEVLDLGNN 751
                 L+ + L  N
Sbjct: 220 FDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.4 bits (147), Expect = 7e-10
 Identities = 40/230 (17%), Positives = 89/230 (38%), Gaps = 32/230 (13%)

Query: 551 NLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQL 610
           NLDLS N +   + ++ +      L+ L+LS   + +++   +   L+ ++ L L  N +
Sbjct: 32  NLDLSFNPLR-HLGSYSFF-SFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPI 88

Query: 611 QGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYL 670
           Q                      S+     + ++          ++  +    I   K L
Sbjct: 89  Q----------------------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 671 LVLDLSNNKL-SGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQ----TLDLN 725
             L++++N + S K+P     +++ L  L+L  N +             +     +LDL+
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTN-LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 726 ENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSN 775
            N +   +        +L+ L L  N+++         ++SL+ + L +N
Sbjct: 186 LNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 41/200 (20%), Positives = 68/200 (34%), Gaps = 49/200 (24%)

Query: 575 LEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSS 634
            + L+LS N L  L   YS      + VLDL   ++Q                      +
Sbjct: 30  TKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQ----------------------T 66

Query: 635 IPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDI 694
           I            + SLS                 L  L L+ N +          +S  
Sbjct: 67  IEDGA--------YQSLSH----------------LSTLILTGNPIQSLALGAFSGLSS- 101

Query: 695 LGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGG-TVPKSLANCRKLEVLDLGNNKI 753
           L  L     +L+   +        L+ L++  N +    +P+  +N   LE LDL +NKI
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 754 RDTFPCWLKNISSLRVLVLR 773
           +  +   L+ +  + +L L 
Sbjct: 162 QSIYCTDLRVLHQMPLLNLS 181

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 54/250 (21%), Positives = 88/250 (35%), Gaps = 63/250 (25%)

Query: 104 LQSLNLAFNMFNATEIPSG-LGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSY 162
            ++L+L+FN      + S    +   L  L+LS                 + T++     
Sbjct: 30  TKNLDLSFN--PLRHLGSYSFFSFPELQVLDLSR--------------CEIQTIE----- 68

Query: 163 SFGGPLKLENPNLSGLLQNLAELRALYLDGVNISA--PGIEWCQALSSLVPKLRVLSLSS 220
                         G  Q+L+ L  L L G  I +   G       S L   L+ L    
Sbjct: 69  -------------DGAYQSLSHLSTLILTGNPIQSLALGA-----FSGL-SSLQKLVAVE 109

Query: 221 CYL----SGPIHPSLAKLQSLSVICLDQNDLSS-PVPEFLADFFNLTSLNLSSSGL---- 271
             L    + PI   L  L+ L+   +  N + S  +PE+ ++  NL  L+LSS+ +    
Sbjct: 110 TNLASLENFPIG-HLKTLKELN---VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165

Query: 272 NGTFPE-TILQVHTLQTLDLSGNSLLRGSLPD--FPKNSSLRTLMLSYANFSGVLPDSIG 328
                    + +  L  LDLS N +    +    F K   L+ L L       V      
Sbjct: 166 CTDLRVLHQMPLLNLS-LDLSLNPM--NFIQPGAF-KEIRLKELALDTNQLKSVPDGIFD 221

Query: 329 NLKNLSRLDL 338
            L +L ++ L
Sbjct: 222 RLTSLQKIWL 231

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.9 bits (125), Expect = 4e-07
 Identities = 38/188 (20%), Positives = 63/188 (33%), Gaps = 23/188 (12%)

Query: 100 SLKYLQSLNLAFNMFNATEIPSGL-GNLTNLTHLNLSNAGFAGQIPIQV-SAMTRLVTLD 157
           S   LQ L+L+        I  G   +L++L+ L L+       + +   S ++ L  L 
Sbjct: 50  SFPELQVLDLSRC--EIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV 106

Query: 158 LSS-------SYSFGGPLKLENPNLS----------GLLQNLAELRALYLDGVNISAPGI 200
                     ++  G    L+  N++              NL  L  L L    I +   
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

Query: 201 EWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFN 260
              + L  +      L LS   ++  I P   K   L  + LD N L S          +
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTS 225

Query: 261 LTSLNLSS 268
           L  + L +
Sbjct: 226 LQKIWLHT 233

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 82.5 bits (204), Expect = 3e-17
 Identities = 62/228 (27%), Positives = 80/228 (35%), Gaps = 34/228 (14%)

Query: 260 NLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANF 319
           +   +N     L    P  +        L LS N L   SL      + L  L L  A  
Sbjct: 11  SHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 320 SGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKN 379
           + +     G L  L  LDL+   L  S+P     L  L  LD+S N+             
Sbjct: 68  TKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR------------- 111

Query: 380 LTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLF-SIPMLQQLLLANNK 438
           LT L        GA+       L  L  + L+ N L  ++P  L    P L++L LANN 
Sbjct: 112 LTSLP------LGALR-----GLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN 159

Query: 439 FGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSN 486
               +P         LDTL L  N L   IP   F    L    L  N
Sbjct: 160 LTE-LPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 73.2 bits (180), Expect = 4e-14
 Identities = 50/210 (23%), Positives = 80/210 (38%), Gaps = 19/210 (9%)

Query: 307 SSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNK 366
           +S   +     N + + P  +   K+ + L L+   L      +L   T+L  L+L   +
Sbjct: 10  ASHLEVNCDKRNLTAL-PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 367 FVGPIPSLHMSKNLTHLDLSNN---ALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSL 423
            +  +        L  LDLS+N   +LP          L  L  +D+  N L  S+P   
Sbjct: 67  -LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ-----TLPALTVLDVSFNRLT-SLPLGA 119

Query: 424 F-SIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFE-LKNLKIL 481
              +  LQ+L L  N+    +P         L+ L L+ N L   +P  +   L+NL  L
Sbjct: 120 LRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTL 177

Query: 482 MLSSNKLNGTVQLAAIQRLRNLIRLELSYN 511
           +L  N L  T+          L    L  N
Sbjct: 178 LLQENSLY-TIPKGFFGSH-LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 50/198 (25%), Positives = 75/198 (37%), Gaps = 32/198 (16%)

Query: 242 LDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLP 301
           L +N L +     L  +  LT LNL  + L  T  +    +  L TLDLS N L   SLP
Sbjct: 38  LSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQL--QSLP 93

Query: 302 D-FPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSL-AKLTQLVY 359
                  +L  L +S+   + +   ++  L  L  L L    L  ++P  L     +L  
Sbjct: 94  LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEK 152

Query: 360 LDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSI 419
           L L++N     +  L                 G         L NL  + L+ N+L  +I
Sbjct: 153 LSLANNN----LTELP---------------AGL-----LNGLENLDTLLLQENSLY-TI 187

Query: 420 PRSLFSIPMLQQLLLANN 437
           P+  F   +L    L  N
Sbjct: 188 PKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 51/250 (20%), Positives = 76/250 (30%), Gaps = 76/250 (30%)

Query: 502 NLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISG 561
           +   L LS N L   +       +++  L L   +L  +    +   L  LDLS NQ+  
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ- 90

Query: 562 EIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNA 621
            +P     +    L  L++S N L+SL    ++  L  +  L L  N+L+          
Sbjct: 91  SLPLLGQTLPA--LTVLDVSFNRLTSLP-LGALRGLGELQELYLKGNELK---------- 137

Query: 622 VLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLS 681
                       ++P          +                      L  L L+NN L+
Sbjct: 138 ------------TLPPG--------LLTPTPK----------------LEKLSLANNNLT 161

Query: 682 GKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCR 741
                                  L   L     G   L TL L EN L  T+PK      
Sbjct: 162 ----------------------ELPAGL---LNGLENLDTLLLQENSL-YTIPKGFFGSH 195

Query: 742 KLEVLDLGNN 751
            L    L  N
Sbjct: 196 LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 43/201 (21%), Positives = 65/201 (32%), Gaps = 28/201 (13%)

Query: 575 LEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSS 634
              L+LS NLL +     ++     +T L+L   +L                        
Sbjct: 33  TTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAELT----------------------K 69

Query: 635 IPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDI 694
           +   +  ++       LS N +   +P        L VLD+S N+L+      L  + + 
Sbjct: 70  LQ--VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE- 125

Query: 695 LGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIR 754
           L  L L+GN L             L+ L L  N L       L     L+ L L  N + 
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185

Query: 755 DTFPCWLKNISSLRVLVLRSN 775
            T P        L    L  N
Sbjct: 186 -TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 18/157 (11%)

Query: 624 VDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLS-- 681
           V+    + T+ +P D+      T    LS N +      T+     L  L+L   +L+  
Sbjct: 15  VNCDKRNLTA-LPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70

Query: 682 ---GKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLA 738
              G +P         LG L+L  N L  +L +       L  LD++ N+L      +L 
Sbjct: 71  QVDGTLPV--------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 739 NCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSN 775
              +L+ L L  N+++   P  L     L  L L +N
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 43/177 (24%), Positives = 72/177 (40%), Gaps = 9/177 (5%)

Query: 601 TVLDLHSNQLQGNIPHP-PRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGV 659
             ++     L   +P   P++  ++  S N   +     +      T   +L    +T +
Sbjct: 13  LEVNCDKRNLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLT-QLNLDRAELTKL 70

Query: 660 IPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSV-TFPGNCG 718
             +       L  LDLS+N+L   +P     +   L VL++  N L+ +L +    G   
Sbjct: 71  --QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPA-LTVLDVSFNRLT-SLPLGALRGLGE 125

Query: 719 LQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSN 775
           LQ L L  N+L    P  L    KLE L L NN + +     L  + +L  L+L+ N
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 46/172 (26%), Positives = 71/172 (41%), Gaps = 23/172 (13%)

Query: 100 SLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLS 159
               L  LNL       T++    G L  L  L+LS+      +P+    +  L  LD+S
Sbjct: 53  PYTRLTQLNLDRA--ELTKLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108

Query: 160 SSYSFGGPLKLEN-PNLSGLLQNLAELRALYLDGVNISA--PGIEWCQALSSLVPKLRVL 216
            +       +L + P   G L+ L EL+ LYL G  +    PG      L+   PKL  L
Sbjct: 109 FN-------RLTSLP--LGALRGLGELQELYLKGNELKTLPPG-----LLTPT-PKLEKL 153

Query: 217 SLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSS 268
           SL++  L+      L  L++L  + L +N L + +P+       L    L  
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHG 204

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 79.7 bits (197), Expect = 1e-16
 Identities = 44/238 (18%), Positives = 91/238 (38%), Gaps = 36/238 (15%)

Query: 283 HTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCN 342
           H  +   ++   +    +P  P   S +TL L   +   +   +  NL N+SR+ ++   
Sbjct: 11  HQEEDFRVTCKDIQ--RIPSLP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 343 LSGSIPT-SLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEH 401
               + + S   L+++ ++++ +             +NLT++D      P A      + 
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNT------------RNLTYID------PDA-----LKE 103

Query: 402 LSNLVYVDLRNNALNGSIP--RSLFSIPMLQQLLLANNKFGGPIPE--FSNASYSALDTL 457
           L  L ++ + N  L    P    ++S  +   L + +N +   IP   F     +   TL
Sbjct: 104 LPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC-NETLTL 161

Query: 458 DLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIR-LELSYNNLT 514
            L  N     +    F    L  + L+ NK    +   A   + +    L++S  ++T
Sbjct: 162 KLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 29/211 (13%), Positives = 72/211 (34%), Gaps = 26/211 (12%)

Query: 500 LRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLAS-CKLKVIPN--LKSQSKLFNLDLSD 556
             +   L+L   +L    S   S    +  + ++    L+ + +    + SK+ ++++ +
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 557 NQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPH 616
            +    I     +     L++L + +  L        +   ++  +L++  N    +IP 
Sbjct: 90  TRNLTYIDPDALK-ELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP- 147

Query: 617 PPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLS 676
                       N+F            N T+   L +N  T  +         L  + L+
Sbjct: 148 -----------VNAFQ--------GLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187

Query: 677 NNKLSGKMPT-CLIKMSDILGVLNLRGNSLS 706
            NK    +       +     +L++   S++
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 35/255 (13%), Positives = 84/255 (32%), Gaps = 54/255 (21%)

Query: 522 SFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLN 579
           S P   +TL+L    L+ IP+    +   +  + +S +    ++ +  +      + ++ 
Sbjct: 28  SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY-NLSKVTHIE 86

Query: 580 LSHN-LLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGD 638
           + +   L+ +  P ++ +L L+  L + +  L+                        P  
Sbjct: 87  IRNTRNLTYID-PDALKELPLLKFLGIFNTGLK----------------------MFP-- 121

Query: 639 IGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPT-CLIKMSDILGV 697
                + T  +S                     +L++++N     +P      + +    
Sbjct: 122 -----DLTKVYSTDI----------------FFILEITDNPYMTSIPVNAFQGLCNETLT 160

Query: 698 LNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPK-SLAN-CRKLEVLDLGNNKIRD 755
           L L  N  +      F G   L  + LN+N+    + K +         +LD+    +  
Sbjct: 161 LKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219

Query: 756 TFPCWLKNISSLRVL 770
                L+++  L   
Sbjct: 220 LPSKGLEHLKELIAR 234

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 80.9 bits (200), Expect = 3e-16
 Identities = 61/330 (18%), Positives = 111/330 (33%), Gaps = 71/330 (21%)

Query: 284 TLQTLDLSGNSL----LRGSLPDFPKNSSLRTLMLSYANFSG----VLPDSIGNLKNLSR 335
           +++   L  +++     +       ++ S++ ++LS           L ++I + K+L  
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 336 LDLARCNLS----------GSIPTSLAKLTQLVYLDLSSNKFVGPI------PSLHMSKN 379
            + +                 +  +L K  +L  + LS N F GP         L     
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF-GPTAQEPLIDFLSKHTP 123

Query: 380 LTHLDLSNN------------ALPGAISSTDWEHLSNLVYVDLRNNALNG----SIPRSL 423
           L HL L NN            AL     +   ++   L  +    N L         ++ 
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183

Query: 424 FSIPMLQQLLLANNKFG--GPIPEFSNA--SYSALDTLDLSANRL--EG--PIPMSIFEL 475
            S  +L  + +  N     G              L  LDL  N     G   + +++   
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243

Query: 476 KNLKILMLSSNKL--NGTVQLA-AIQRLRN--LIRLELSYNNLTVNASGDSSFPSQVRTL 530
            NL+ L L+   L   G   +  A  +L N  L  L L YN + ++A             
Sbjct: 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA-----------VR 292

Query: 531 RLASCKLKVIPNLKSQSKLFNLDLSDNQIS 560
            L +   + +P+L        L+L+ N+ S
Sbjct: 293 TLKTVIDEKMPDLLF------LELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 72.8 bits (179), Expect = 1e-13
 Identities = 56/349 (16%), Positives = 105/349 (30%), Gaps = 76/349 (21%)

Query: 104 LQSLNLAFNMFN---ATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSS 160
           ++  +L  +         + + L    ++  + LS         I   A           
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNT------IGTEAARW-------- 51

Query: 161 SYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLV------PKLR 214
                         LS  + +  +L       +       E  +AL  L+      PKL 
Sbjct: 52  --------------LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 97

Query: 215 VLSLSSCYLSG----PIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSG 270
            + LS          P+   L+K   L  + L  N L       +A    L  L ++   
Sbjct: 98  TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQELAVNKKA 155

Query: 271 LNGTFPETILQVHTLQTLDLSGNSLLRGSLPD----FPKNSSLRTLMLSYANF-----SG 321
            N            L+++    N L  GS+ +    F  +  L T+ +            
Sbjct: 156 KNAP---------PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH 206

Query: 322 VLPDSIGNLKNLSRLDLARCNLSG----SIPTSLAKLTQLVYLDLSSN-------KFVGP 370
           +L + +   + L  LDL     +     ++  +L     L  L L+           V  
Sbjct: 207 LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266

Query: 371 IPSLHMSKNLTHLDLSNNALPG----AISSTDWEHLSNLVYVDLRNNAL 415
             S   +  L  L L  N +       + +   E + +L++++L  N  
Sbjct: 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 59/358 (16%), Positives = 104/358 (29%), Gaps = 98/358 (27%)

Query: 306 NSSLRTLMLSYANFSGV----LPDSIGNLKNLSRLDLARCNLSG----SIPTSLAKLTQL 357
             S+    L     +      +   +    ++  + L+   +       +  ++A    L
Sbjct: 3   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62

Query: 358 VYLDLSSNKFVGPI------------PSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNL 405
              + S   F G +             +L     L  + LS+N    A   T  E L + 
Sbjct: 63  EIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN----AFGPTAQEPLIDF 117

Query: 406 VYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFG------------GPIPEFSNASYSA 453
               L  +               L+ L L NN  G                     +   
Sbjct: 118 ----LSKH-------------TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP 160

Query: 454 LDTLDLSANRLEGP----IPMSIFELKNLKILMLSSNKLN--GTVQL--AAIQRLRNLIR 505
           L ++    NRLE         +    + L  + +  N +   G   L    +   + L  
Sbjct: 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV 220

Query: 506 LELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGE--- 562
           L+L  N  T   S             LA         LKS   L  L L+D  +S     
Sbjct: 221 LDLQDNTFTHLGS-----------SALAIA-------LKSWPNLRELGLNDCLLSARGAA 262

Query: 563 -IPNWVWEIGNGGLEYLNLSHN---------LLSSLQRPYSISDLNLMTVLDLHSNQL 610
            + +   ++ N GL+ L L +N         L + +           +  L+L+ N+ 
Sbjct: 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD-----LLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 70.5 bits (173), Expect = 7e-13
 Identities = 64/342 (18%), Positives = 109/342 (31%), Gaps = 70/342 (20%)

Query: 454 LDTLDLSANRL--EG--PIPMSIFELKNLKILMLSSNKLN--GTVQLA-AIQRLRNLIRL 506
           ++   L  + +  E    +   + E  ++K ++LS N +       L+  I   ++L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 507 ELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNW 566
           E S              P  +R L  A         L    KL  + LSDN         
Sbjct: 66  EFSDIFTG---RVKDEIPEALRLLLQA---------LLKCPKLHTVRLSDNAFGPTAQEP 113

Query: 567 VWEI--GNGGLEYLNLSHN------------LLSSLQRPYSISDLNLMTVLDLHSNQLQG 612
           + +    +  LE+L L +N             L  L       +   +  +    N+L+ 
Sbjct: 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE- 172

Query: 613 NIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSIT-----GVIPETICRA 667
                           N           +         +  N I       ++ E +   
Sbjct: 173 ----------------NGSMKEWAKTFQSHRLLH-TVKMVQNGIRPEGIEHLLLEGLAYC 215

Query: 668 KYLLVLDLSNNKLSGKMPTCL---IKMSDILGVLNLRGNSLS--GTLSV----TFPGNCG 718
           + L VLDL +N  +    + L   +K    L  L L    LS  G  +V    +   N G
Sbjct: 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG 275

Query: 719 LQTLDLNENQLGGTVPKSLA-----NCRKLEVLDLGNNKIRD 755
           LQTL L  N++     ++L          L  L+L  N+  +
Sbjct: 276 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.7 bits (158), Expect = 5e-11
 Identities = 55/377 (14%), Positives = 104/377 (27%), Gaps = 103/377 (27%)

Query: 470 MSIFELKNLKILMLSSNKLN--GTVQLA-AIQRLRNLIRLELSYNNLTVNASGDSSFPSQ 526
           M+ F ++      L  + +       +   +    ++  + LS N +   A+        
Sbjct: 1   MARFSIEGKS---LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAA-------- 49

Query: 527 VRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQIS---GEIPNWVWEIG-----NGGLEYL 578
                L+         + S+  L   + SD        EIP  +  +         L  +
Sbjct: 50  ---RWLSEN-------IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99

Query: 579 NLSHN---------LLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNN 629
            LS N         L+  L +   +        L LH+N L                   
Sbjct: 100 RLSDNAFGPTAQEPLIDFLSKHTPL------EHLYLHNNGL------------------- 134

Query: 630 SFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCL- 688
                  G    +    I  +L   ++     +    A  L  +    N+L         
Sbjct: 135 -------GPQAGAK---IARALQELAVN----KKAKNAPPLRSIICGRNRLENGSMKEWA 180

Query: 689 --IKMSDILGVLNLRGNSL-----SGTLSVTFPGNCGLQTLDLNENQLGGT----VPKSL 737
              +   +L  + +  N +        L         L+ LDL +N         +  +L
Sbjct: 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240

Query: 738 ANCRKLEVLDLGNNKIRDT----FPCWLKNIS--SLRVLVLRSNSFYGSITCRE----ND 787
            +   L  L L +  +              +    L+ L L+ N        R      D
Sbjct: 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI-ELDAVRTLKTVID 299

Query: 788 DSWPMLQIVDIASNNFG 804
           +  P L  +++  N F 
Sbjct: 300 EKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.7 bits (132), Expect = 9e-08
 Identities = 52/264 (19%), Positives = 86/264 (32%), Gaps = 44/264 (16%)

Query: 98  LLSLKYLQSLNLAFNMFN---------ATEIPSGLGNLTNLTHLNLS-NA-GFAGQIPI- 145
           + S K L+    +                 +   L     L  + LS NA G   Q P+ 
Sbjct: 56  IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI 115

Query: 146 -QVSAMTRLVTLDLSSSY--SFGGPL---KLENPNLSGLLQNLAELRALYLDGVNISAPG 199
             +S  T L  L L ++      G      L+   ++   +N   LR++      +    
Sbjct: 116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175

Query: 200 IE-WCQALSSLVPKLRVLSLSSCYL-----SGPIHPSLAKLQSLSVICLDQNDLSSPVPE 253
           ++ W +   S    L  + +    +        +   LA  Q L V+ L  N  +     
Sbjct: 176 MKEWAKTFQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS 234

Query: 254 FLADFF----NLTSLNLSSSGLNGTFPETILQV------HTLQTLDLSGNSL-------L 296
            LA       NL  L L+   L+      ++          LQTL L  N +       L
Sbjct: 235 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294

Query: 297 RGSLPDFPKNSSLRTLMLSYANFS 320
           +  + +  K   L  L L+   FS
Sbjct: 295 KTVIDE--KMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.0 bits (99), Expect = 9e-04
 Identities = 36/292 (12%), Positives = 92/292 (31%), Gaps = 51/292 (17%)

Query: 695 LGVLNLRGNSLSG----TLSVTFPGNCGLQTLDLNENQLGGT----VPKSLANCRKLEVL 746
           +   +L+ ++++     ++      +  ++ + L+ N +G      + +++A+ + LE+ 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 747 DLGNNKIRDTFPCW----------LKNISSLRVLVLRSNSF--YGSITCRENDDSWPMLQ 794
           +  +                    L     L  + L  N+F         +       L+
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 795 IVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFY-----QDVVTVT 849
            + + +N  G         +   +     E   N K  +   L  I       ++     
Sbjct: 126 HLYLHNNGLG-------PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178

Query: 850 WKGREMELVKILSIFTSIDFSRNNF-----DGPIPEKIGRLKSLYGLNFSQNAFGGP--- 901
           W     +  +   +  ++   +N       +  + E +   + L  L+   N F      
Sbjct: 179 W----AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS 234

Query: 902 -IPSTIGNLQQLESLDLSMNHLSDQIPIQLANL------TFLSVLNLSHNNL 946
            +   + +   L  L L+   LS +    + +         L  L L +N +
Sbjct: 235 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 77.2 bits (190), Expect = 3e-15
 Identities = 44/291 (15%), Positives = 84/291 (28%), Gaps = 24/291 (8%)

Query: 506 LELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEI 563
                + +T      S  P     LR    KL+VI          L  +++S N +   I
Sbjct: 14  FLCQESKVT---EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 564 PNWVWEIGNGGLEYLNLSH-NLLSSLQRPYSISDLNLMTVLDLHSNQLQ----GNIPHPP 618
              V+      L  + +   N L  +  P +  +L  +  L + +  ++     +  H  
Sbjct: 71  EADVFS-NLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128

Query: 619 RNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNN 678
           +  +L    N +  +            ++   L+ N I  +        +   +    NN
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNN 188

Query: 679 KLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLA 738
            L           S    +L++    +    S        L+       +    +P +L 
Sbjct: 189 NLEELPNDVFHGASG-PVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLP-TLE 243

Query: 739 NCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDS 789
               L    L        F  W + IS L       +        R+  D 
Sbjct: 244 KLVALMEASLTYPSHCCAFANWRRQISEL-------HPICNKSILRQEVDY 287

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.9 bits (166), Expect = 4e-12
 Identities = 47/282 (16%), Positives = 82/282 (29%), Gaps = 57/282 (20%)

Query: 117 TEIPSGLGNLTNLTHLNLSNAGFAGQIPIQV-SAMTRLVTLDLSSSYSFGGPLKLENPNL 175
           TEIPS L    N   L          I     S    L  +++S           +N  L
Sbjct: 22  TEIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEIS-----------QNDVL 67

Query: 176 S----GLLQNLAELRALYLDGVN----ISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPI 227
                 +  NL +L  + ++  N    I+       +A  +L P L+ L +S+  +    
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINP------EAFQNL-PNLQYLLISNTGIKHLP 120

Query: 228 HPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQT 287
                      ++ +  N     +      F  L+                         
Sbjct: 121 DVHKIHSLQKVLLDIQDNINIHTIERNS--FVGLSFE--------------------SVI 158

Query: 288 LDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSI 347
           L L+ N +       F         +    N   +  D          LD++R  +  S+
Sbjct: 159 LWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SL 217

Query: 348 PT-SLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNN 388
           P+  L  L +L      + K    +P+L     L    L+  
Sbjct: 218 PSYGLENLKKLRARSTYNLKK---LPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.5 bits (165), Expect = 5e-12
 Identities = 42/248 (16%), Positives = 83/248 (33%), Gaps = 24/248 (9%)

Query: 346 SIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMS-----KNLTHLDLSNNALPGAISSTDWE 400
            IP+ L      + L     K    +  +         +L  +++S N +   I +  + 
Sbjct: 23  EIPSDL--PRNAIELRFVLTK----LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 76

Query: 401 HLSNLVYVDLRNNALNGSIPRSLFS-IPMLQQLLLANNKFGGPIPEFSNASYSALDTLDL 459
           +L  L  + +        I    F  +P LQ LL++N      +P+           LD+
Sbjct: 77  NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDI 135

Query: 460 SANRLEGPIPMSIFE--LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNA 517
             N     I  + F        IL L+ N +   +  +A    +         NNL    
Sbjct: 136 QDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELP 194

Query: 518 SGDSSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGL 575
           +      S    L ++  ++  +P+  L++  KL      + +    +   V       L
Sbjct: 195 NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLV------AL 248

Query: 576 EYLNLSHN 583
              +L++ 
Sbjct: 249 MEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 33/250 (13%), Positives = 78/250 (31%), Gaps = 31/250 (12%)

Query: 698 LNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKS-LANCRKLEVLDLGN-NKIRD 755
           L      L       F G   L+ +++++N +   +     +N  KL  + +   N +  
Sbjct: 35  LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94

Query: 756 TFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSW 815
             P   +N+ +L+ L++ +      +       S     ++DI  N     + +      
Sbjct: 95  INPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHS-LQKVLLDIQDNINIHTIERNSFVGL 152

Query: 816 KAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFD 875
                     ++  +++H                             +        NN +
Sbjct: 153 SFESVILWLNKNGIQEIHNSAFNG---------------------TQLDELNLSDNNNLE 191

Query: 876 GPIPEKI-GRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLT 934
             +P  +         L+ S+          + NL++L +      +L  ++P  L  L 
Sbjct: 192 E-LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLPT-LEKLV 246

Query: 935 FLSVLNLSHN 944
            L   +L++ 
Sbjct: 247 ALMEASLTYP 256

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 72.7 bits (179), Expect = 4e-14
 Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 16/187 (8%)

Query: 332 NLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSL-----HMSKNLTHLDLS 386
           +  +LDL    LS     +  +LT+L  L L+ NK    + +L        KNL  L ++
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK----LQTLPAGIFKELKNLETLWVT 93

Query: 387 NNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLF-SIPMLQQLLLANNKFGGPIPE 445
           +N L  A+    ++ L NL  + L  N L  S+P  +F S+  L  L L  N+    +P+
Sbjct: 94  DNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQS-LPK 150

Query: 446 FSNASYSALDTLDLSANRLEGPIPMSIFE-LKNLKILMLSSNKLNGTVQLAAIQRLRNLI 504
                 ++L  L L  N+L+  +P   F+ L  LK L L +N+L   V   A   L  L 
Sbjct: 151 GVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLK 208

Query: 505 RLELSYN 511
            L+L  N
Sbjct: 209 MLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 72.3 bits (178), Expect = 6e-14
 Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 28/215 (13%)

Query: 284 TLQTLDLSGNSLLRGSLPD-FPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCN 342
              ++D S   L   ++P   P  +  + L L     S +   +   L  L  L L    
Sbjct: 17  NKNSVDCSSKKLT--AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72

Query: 343 LSGSIPTSL-AKLTQLVYLDLSSNK--------FVGPIPSLHMSKNLTHLDLSNNALPGA 393
           L  ++P  +  +L  L  L ++ NK        F           NL  L L  N L  +
Sbjct: 73  LQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQL-------VNLAELRLDRNQL-KS 123

Query: 394 ISSTDWEHLSNLVYVDLRNNALNGSIPRSLF-SIPMLQQLLLANNKFGGPIPEFSNASYS 452
           +    ++ L+ L Y+ L  N L  S+P+ +F  +  L++L L NN+    +PE +    +
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLT 181

Query: 453 ALDTLDLSANRLEGPIPMSIFE-LKNLKILMLSSN 486
            L TL L  N+L+  +P   F+ L+ LK+L L  N
Sbjct: 182 ELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 9/166 (5%)

Query: 454 LDTLDLSANRLEGPIPMSIFE-LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNN 512
              LDL +N+L   +P   F  L  L++L L+ NKL  T+     + L+NL  L ++ N 
Sbjct: 39  TKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96

Query: 513 LTVNASGDSSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEIPNWVWEI 570
           L     G       +  LRL   +LK +P     S +KL  L L  N++   +P  V++ 
Sbjct: 97  LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFD- 154

Query: 571 GNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPH 616
               L+ L L +N L  +    +   L  +  L L +NQL+  +P 
Sbjct: 155 KLTSLKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQLK-RVPE 198

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 44/164 (26%), Positives = 63/164 (38%), Gaps = 12/164 (7%)

Query: 230 SLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETIL-QVHTLQTL 288
            L KL+ L    L+ N L +       +  NL +L ++ + L    P  +  Q+  L  L
Sbjct: 59  RLTKLRLLY---LNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAEL 114

Query: 289 DLSGNSLLRGSLPD--FPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGS 346
            L  N L   SLP   F   + L  L L Y     +       L +L  L L    L   
Sbjct: 115 RLDRNQL--KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-R 171

Query: 347 IPTSL-AKLTQLVYLDLSSNKFVG-PIPSLHMSKNLTHLDLSNN 388
           +P     KLT+L  L L +N+    P  +    + L  L L  N
Sbjct: 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 43/201 (21%), Positives = 74/201 (36%), Gaps = 24/201 (11%)

Query: 575 LEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSS 634
            + L+L  N LSSL    +   L  + +L L+ N+LQ                      +
Sbjct: 39  TKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNKLQ----------------------T 75

Query: 635 IPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDI 694
           +P  I   +       ++ N +  +      +   L  L L  N+L    P     ++  
Sbjct: 76  LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK- 134

Query: 695 LGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIR 754
           L  L+L  N L       F     L+ L L  NQL      +     +L+ L L NN+++
Sbjct: 135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194

Query: 755 DTFPCWLKNISSLRVLVLRSN 775
                   ++  L++L L+ N
Sbjct: 195 RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 51/209 (24%), Positives = 74/209 (35%), Gaps = 42/209 (20%)

Query: 551 NLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISD-LNLMTVLDLHSNQ 609
            LDL  N++S  +P+  +      L  L L+ N L +L  P  I   L  +  L +  N+
Sbjct: 41  KLDLQSNKLS-SLPSKAFH-RLTKLRLLYLNDNKLQTL--PAGIFKELKNLETLWVTDNK 96

Query: 610 LQ---GNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICR 666
           LQ     +     N   +    N   S +P  +        F SL+              
Sbjct: 97  LQALPIGVFDQLVNLAELRLDRNQLKS-LPPRV--------FDSLTK------------- 134

Query: 667 AKYLLVLDLSNNKLSGKMP----TCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTL 722
              L  L L  N+L   +P      L      L  L L  N L       F     L+TL
Sbjct: 135 ---LTYLSLGYNELQ-SLPKGVFDKLTS----LKELRLYNNQLKRVPEGAFDKLTELKTL 186

Query: 723 DLNENQLGGTVPKSLANCRKLEVLDLGNN 751
            L+ NQL      +  +  KL++L L  N
Sbjct: 187 KLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 11/183 (6%)

Query: 502 NLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQI 559
           +  +L+L  N L+   S      +++R L L   KL+ +P    K    L  L ++DN++
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97

Query: 560 SGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPH--- 616
              +P  V++     L  L L  N L SL  P     L  +T L L  N+LQ ++P    
Sbjct: 98  Q-ALPIGVFD-QLVNLAELRLDRNQLKSLP-PRVFDSLTKLTYLSLGYNELQ-SLPKGVF 153

Query: 617 -PPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDL 675
               +   +   NN     +P    + +       L +N +  V        + L +L L
Sbjct: 154 DKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212

Query: 676 SNN 678
             N
Sbjct: 213 QEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 47/195 (24%), Positives = 69/195 (35%), Gaps = 23/195 (11%)

Query: 104 LQSLNLAFNMFNATEIPSG-LGNLTNLTHLNLSNAGFAGQIPIQV-SAMTRLVTLDLSSS 161
            + L+L  N    + +PS     LT L  L L++      +P  +   +  L TL ++ +
Sbjct: 39  TKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95

Query: 162 YSFGGPLKLEN-PNLSGLLQNLAELRALYLDGVNISA--PGIEWCQALSSLVPKLRVLSL 218
                  KL+  P   G+   L  L  L LD   + +  P         SL  KL  LSL
Sbjct: 96  -------KLQALP--IGVFDQLVNLAELRLDRNQLKSLPPR-----VFDSLT-KLTYLSL 140

Query: 219 SSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPET 278
               L         KL SL  + L  N L             L +L L ++ L       
Sbjct: 141 GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200

Query: 279 ILQVHTLQTLDLSGN 293
              +  L+ L L  N
Sbjct: 201 FDSLEKLKMLQLQEN 215

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 73.3 bits (180), Expect = 8e-14
 Identities = 49/214 (22%), Positives = 79/214 (36%), Gaps = 48/214 (22%)

Query: 371 IPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQ 430
           +P   +      LDLS+N L    +      L+NL  + L +N LN  I    F      
Sbjct: 33  VPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFV----- 85

Query: 431 QLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFE-LKNLKILMLSSNKLN 489
                                  L  LDLS+N L   +   +F  L+ L++L+L +N + 
Sbjct: 86  -------------------PVPNLRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNHIV 125

Query: 490 GTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKL 549
             V   A + +  L +L LS N ++        FP +            +I +     KL
Sbjct: 126 -VVDRNAFEDMAQLQKLYLSQNQIS-------RFPVE------------LIKDGNKLPKL 165

Query: 550 FNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHN 583
             LDLS N++       + ++       L L +N
Sbjct: 166 MLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 57/210 (27%), Positives = 80/210 (38%), Gaps = 16/210 (7%)

Query: 242 LDQNDLSSPVPE-FLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSL 300
           L  N+LS    E       NL SL LS + LN    E  + V  L+ LDLS N L   +L
Sbjct: 46  LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL--HTL 103

Query: 301 PD--FPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIP----TSLAKL 354
            +  F    +L  L+L   +   V  ++  ++  L +L L++  +S   P        KL
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKL 162

Query: 355 TQLVYLDLSSNKFVG-PIPSLHMSKNLTH--LDLSNNAL---PGAISSTDWEHLSNLVYV 408
            +L+ LDLSSNK    P+  L          L L NN L                 L  V
Sbjct: 163 PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSV 222

Query: 409 DLRNNALNGSIPRSLFSIPMLQQLLLANNK 438
                 L     + L +I  L     +  K
Sbjct: 223 MDFQEDLYCMHSKKLHNIFSLDFFNCSEYK 252

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.9 bits (140), Expect = 7e-09
 Identities = 34/159 (21%), Positives = 58/159 (36%), Gaps = 11/159 (6%)

Query: 624 VDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETI-CRAKYLLVLDLSNNKLSG 682
           +  S     + +P  + +    T    LS N+++ +  E    R   L  L LS+N L+ 
Sbjct: 23  LSCSKQQLPN-VPQSLPSY---TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF 78

Query: 683 KMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRK 742
                 + +   L  L+L  N L       F     L+ L L  N +      +  +  +
Sbjct: 79  ISSEAFVPVP-NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ 137

Query: 743 LEVLDLGNNKIR----DTFPCWLKNISSLRVLVLRSNSF 777
           L+ L L  N+I     +        +  L +L L SN  
Sbjct: 138 LQKLYLSQNQISRFPVELIKDG-NKLPKLMLLDLSSNKL 175

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 45/203 (22%), Positives = 67/203 (33%), Gaps = 52/203 (25%)

Query: 575 LEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSS 634
              L+LSHN LS L+  ++ + L  +  L L  N L                        
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN----------------------F 78

Query: 635 IPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDI 694
           I  +         F  + +                L  LDLS+N L          +   
Sbjct: 79  ISSE--------AFVPVPN----------------LRYLDLSSNHLHTLDEFLFSDLQA- 113

Query: 695 LGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVP----KSLANCRKLEVLDLGN 750
           L VL L  N +       F     LQ L L++NQ+    P    K      KL +LDL +
Sbjct: 114 LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSS 172

Query: 751 NKIRDTFPCWLKNISSLRVLVLR 773
           NK++      L+ + +     L 
Sbjct: 173 NKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.8 bits (132), Expect = 6e-08
 Identities = 35/164 (21%), Positives = 56/164 (34%), Gaps = 16/164 (9%)

Query: 183 AELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHP-SLAKLQSLSVIC 241
           +    L L   N+S   +      + L   L  L LS  +L+  I   +   + +L  + 
Sbjct: 39  SYTALLDLSHNNLSR--LRAEWTPTRL-TNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLD 94

Query: 242 LDQNDLSSPVPEFLADFFNLTSLNLSSSGL----NGTFPETILQVHTLQTLDLSGNSLLR 297
           L  N L +      +D   L  L L ++ +       F      +  LQ L LS N + R
Sbjct: 95  LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE----DMAQLQKLYLSQNQISR 150

Query: 298 ---GSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDL 338
                + D  K   L  L LS      +    +  L    +  L
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.2 bits (125), Expect = 5e-07
 Identities = 40/177 (22%), Positives = 63/177 (35%), Gaps = 26/177 (14%)

Query: 104 LQSLNLAFNMFNATEIPSG--LGNLTNLTHLNLSNAGFAGQIPIQV-SAMTRLVTLDLSS 160
              L+L+ N  N + + +      LTNL  L LS+      I  +    +  L  LDLSS
Sbjct: 41  TALLDLSHN--NLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 161 SYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSS 220
           +        L   +   L  +L  L  L L   +I    ++   A   +  +L+ L LS 
Sbjct: 98  N-------HLHTLD-EFLFSDLQALEVLLLYNNHIVV--VDR-NAFEDM-AQLQKLYLSQ 145

Query: 221 CYLSGPIHP----SLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNG 273
             +S            KL  L ++ L  N L         D   L +   +   L+ 
Sbjct: 146 NQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLT---DLQKLPAWVKNGLYLHN 198

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 74.0 bits (181), Expect = 1e-13
 Identities = 42/290 (14%), Positives = 85/290 (29%), Gaps = 59/290 (20%)

Query: 237 LSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSL- 295
           L    L+                +     L        +         L   +LS     
Sbjct: 304 LPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE-CWCRDSATDEQLFRCELSVEKST 362

Query: 296 -----------LRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLS 344
                      L+   P+         L++   +      +++     L  +D  R    
Sbjct: 363 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR---- 418

Query: 345 GSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSN 404
                           DL S   +          ++  L L++  L   +     E L  
Sbjct: 419 -----------AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL-TVLCHL--EQLLL 464

Query: 405 LVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRL 464
           + ++DL +N L  ++P +L ++  L+ L  ++N                L+ +D      
Sbjct: 465 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA---------------LENVD------ 502

Query: 465 EGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLT 514
                  +  L  L+ L+L +N+L  +  +  +     L+ L L  N+L 
Sbjct: 503 ------GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.2 bits (171), Expect = 2e-12
 Identities = 36/258 (13%), Positives = 82/258 (31%), Gaps = 13/258 (5%)

Query: 332 NLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALP 391
           +L    L       +               L  ++           + L   +LS     
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKS- 361

Query: 392 GAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASY 451
             +  ++ E    L  ++  N     +I   + ++  L                      
Sbjct: 362 -TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY----FSTLKAVDP 416

Query: 452 SALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYN 511
                LD   ++      +   E  ++++L L+   L     L  +++L  +  L+LS+N
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL---TVLCHLEQLLLVTHLDLSHN 473

Query: 512 NLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIG 571
            L       ++    +  L+ +   L+ +  + +  +L  L L +N++  +    +  + 
Sbjct: 474 RLRALPPALAALRC-LEVLQASDNALENVDGVANLPRLQELLLCNNRLQ-QSAA-IQPLV 530

Query: 572 N-GGLEYLNLSHNLLSSL 588
           +   L  LNL  N L   
Sbjct: 531 SCPRLVLLNLQGNSLCQE 548

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.8 bits (131), Expect = 1e-07
 Identities = 44/245 (17%), Positives = 87/245 (35%), Gaps = 35/245 (14%)

Query: 719 LQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFY 778
           L   +L+  +    +   L +C++L+ L+  N     T    ++ +  L           
Sbjct: 351 LFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPL----------- 398

Query: 779 GSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLT 838
             +  +E    +  L+ VD     +   +  K +     +  +  + +     +  + LT
Sbjct: 399 --LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVR--VLHLAHKDLT 454

Query: 839 DIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAF 898
            +                 ++ L + T +D S N     +P  +  L+ L  L  S NA 
Sbjct: 455 VL---------------CHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNAL 498

Query: 899 GGPIPSTIGNLQQLESLDLSMNHLSD-QIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQ 957
              +   + NL +L+ L L  N L        L +   L +LNL  N+L     +  +L 
Sbjct: 499 EN-VDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 556

Query: 958 SFSPT 962
              P+
Sbjct: 557 EMLPS 561

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.6 bits (128), Expect = 2e-07
 Identities = 45/321 (14%), Positives = 94/321 (29%), Gaps = 13/321 (4%)

Query: 482 MLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIP 541
           +L   + +  +    + R    + +  S      +  G          L +         
Sbjct: 235 LLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRN 294

Query: 542 NLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMT 601
                        S N    +    V   G+   +   L  +           +    + 
Sbjct: 295 RPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW--CRDSATDEQLF 352

Query: 602 VLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIP 661
             +L   +             L +    +    +   I   M           ++     
Sbjct: 353 RCELSVEKSTVLQSELESCKELQELEPENKWCLL--TIILLMRALDPLLYEKETLQYFST 410

Query: 662 ETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCG-LQ 720
                      LD   +K   +     ++ +D+  VL+L    L+    +        + 
Sbjct: 411 LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVR-VLHLAHKDLT---VLCHLEQLLLVT 466

Query: 721 TLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGS 780
            LDL+ N+L   +P +LA  R LEVL   +N + +     + N+  L+ L+L +N     
Sbjct: 467 HLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRL-QQ 522

Query: 781 ITCRENDDSWPMLQIVDIASN 801
               +   S P L ++++  N
Sbjct: 523 SAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.8 bits (126), Expect = 4e-07
 Identities = 42/288 (14%), Positives = 91/288 (31%), Gaps = 18/288 (6%)

Query: 666 RAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLN 725
              ++   +   +    +  T   +M  +L +++    S+             +   DL 
Sbjct: 246 CCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLP 305

Query: 726 ENQLGGTVPKSLANCRKLEVLDLGN-NKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCR 784
              L   +P+                  ++D   CW ++ ++   L     S   S   +
Sbjct: 306 AASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQ 365

Query: 785 ENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQD 844
              +S   LQ ++  +           +T    M + +          +F  L  +    
Sbjct: 366 SELESCKELQELEPEN-------KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 418

Query: 845 VVTVTWKGREMELVKILSIF-----TSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFG 899
              +     +  L   +          +  +  +    +   + +L  +  L+ S N   
Sbjct: 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR 476

Query: 900 GPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLE 947
             +P  +  L+ LE L  S N L + +   +ANL  L  L L +N L+
Sbjct: 477 A-LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQ 521

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.7 bits (167), Expect = 7e-12
 Identities = 102/674 (15%), Positives = 196/674 (29%), Gaps = 215/674 (31%)

Query: 356 QLVYLDLSS---NKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRN 412
           Q  Y D+ S   + FV          N    D+ +      +S  + +H+          
Sbjct: 15  QYQYKDILSVFEDAFV---------DNFDCKDVQD-MPKSILSKEEIDHIIMS------K 58

Query: 413 NALNGSIPRSLFSIPMLQQLLLANN---KFGGPIPEFSNASYSALDTLDLSANRLEGPIP 469
           +A++G+    LF   + +Q         KF   + E    +Y  L    +S  + E   P
Sbjct: 59  DAVSGT--LRLFWTLLSKQ----EEMVQKF---VEEVLRINYKFL----MSPIKTEQRQP 105

Query: 470 MSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRT 529
             +  +   +      ++L    Q+ A     N+ RL+                      
Sbjct: 106 SMMTRMYIEQR-----DRLYNDNQVFA---KYNVSRLQ------------------PYLK 139

Query: 530 LRLASCKLKVIPNL---------KSQSKLFNLDLSDNQISGEIPNWV-W-EIGNGGLEYL 578
           LR A  +L+   N+         K+   +        ++  ++   + W  + N      
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTW--VALDVCLSYKVQCKMDFKIFWLNLKN-----C 192

Query: 579 NLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGD 638
           N    +L  LQ+     D N  +  D  S     NI                        
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSS-----NIKLR--------------------- 226

Query: 639 IGNSMNFTIFFSLSSNSITGVIPETICRAKY---LLVLD-LSNNKLSGKMPTCLIKMSD- 693
                          +SI   +   +    Y   LLVL  + N K             + 
Sbjct: 227 --------------IHSIQAELRRLLKSKPYENCLLVLLNVQNAK--------AWNAFNL 264

Query: 694 ---ILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKS---LANCRKLEVLD 747
              IL  L  R   ++  LS     +     + L+ + +  T  +    L         D
Sbjct: 265 SCKIL--LTTRFKQVTDFLSAATTTH-----ISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 748 LGNNKIRDTFPCWLKNIS-SLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGR 806
           L   ++  T P  L  I+ S+R  +   +++       ++ +   +  I++ + N     
Sbjct: 318 L-PREVLTTNPRRLSIIAESIRDGLATWDNW-------KHVNCDKLTTIIESSLNVLEPA 369

Query: 807 VPQKC------------ITS------WKAMMSDEDE-----------AQSNFKDVHFELL 837
             +K             I +      W  ++  +              +   K+    + 
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429

Query: 838 TDIFYQDVVTVTWKGREM--ELV---KILSIFTSIDFSRNNFDGPI-------------P 879
             I Y ++         +   +V    I   F S D      D                P
Sbjct: 430 -SI-YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487

Query: 880 EKIGRLKSLYGLNFS--QN---AFGGPIPSTIGNLQQLESLDLSMNHLSDQIPI--QLAN 932
           E++   + ++ L+F   +           ++   L  L+ L     ++ D  P   +L N
Sbjct: 488 ERMTLFRMVF-LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546

Query: 933 --LTFLSVLNLSHN 944
             L FL    +  N
Sbjct: 547 AILDFL--PKIEEN 558

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.1 bits (155), Expect = 2e-10
 Identities = 111/556 (19%), Positives = 173/556 (31%), Gaps = 145/556 (26%)

Query: 146 QVSAMTRLVTLDLSSSYSF-GGPLKLENPNLSGLLQNLAELR-ALYLDG-------VNIS 196
           Q   + + V   L  +Y F   P+K E    S + +   E R  LY D        V+  
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134

Query: 197 APGIEWCQALSSLVPKLRVLSLSSCYLSGPIH--PSLAKLQSLSV-ICLDQNDLSSPVPE 253
            P ++  QAL  L P   VL          I       K   +++ +CL          +
Sbjct: 135 QPYLKLRQALLELRPAKNVL----------IDGVLGSGK-TWVALDVCLSY--------K 175

Query: 254 FLADF-FNLTSLNLSSSGLNGTFPETILQVHTLQTL--DLSGNSLLRGSLPDFPKN---- 306
                 F +  LNL     N   PET+L++  LQ L   +  N     S  D   N    
Sbjct: 176 VQCKMDFKIFWLNLK----NCNSPETVLEM--LQKLLYQIDPNWT---SRSDHSSNIKLR 226

Query: 307 -----SSLRTLMLS--YANFSGVLPDSIGNLKNLSRLDLARCN-LSGSIPTSLAKLTQLV 358
                + LR L+ S  Y N   VL  ++ N K  +  +L  C  L   + T   ++T   
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVL-LNVQNAKAWNAFNL-SCKIL---LTTRFKQVT--- 278

Query: 359 YLDLSSNKFVGPIPSLHMSKNLTH---LDLSNNALPGAISSTDWEHLSNLVYVDLRNNAL 415
             D  S      I   H S  LT      L    L             +    DL    L
Sbjct: 279 --DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-------------DCRPQDLPREVL 323

Query: 416 NGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDT-LDLSANRLEGPIP----- 469
             + PR L  I    +  LA          + + +   L T ++ S N LE   P     
Sbjct: 324 TTN-PRRLSIIAESIRDGLATWDN------WKHVNCDKLTTIIESSLNVLE---PAEYRK 373

Query: 470 ----MSIFELKNLKI----LMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDS 521
               +S+F   +  I    L L    +  +  +  + +L     +E      T+      
Sbjct: 374 MFDRLSVFP-PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI------ 426

Query: 522 SFPSQVRTLRLASCKL-----KVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIG----N 572
           S PS    L++           ++ +        + DL    +      +   IG    N
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY---FYSHIGHHLKN 483

Query: 573 GGLE---------YLNLS-------HNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPH 616
                        +L+         H    S     S S LN +  L  +   +  N P 
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRH---DSTAWNASGSILNTLQQLKFYKPYICDNDPK 540

Query: 617 PPRNAVLVDYSNNSFT 632
             R  ++    +    
Sbjct: 541 YER--LVNAILDFLPK 554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 65.8 bits (161), Expect = 8e-12
 Identities = 43/258 (16%), Positives = 81/258 (31%), Gaps = 67/258 (25%)

Query: 349 TSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYV 408
                L   V  +L     V  + S      + + +  N+ +    S    +  +NL  +
Sbjct: 13  FPDPGLANAVKQNLGKQS-VTDLVSQKELSGVQNFNGDNSNI---QSLAGMQFFTNLKEL 68

Query: 409 DLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPI 468
            L +N ++         +  L+ L                   + L+ L ++ NRL+   
Sbjct: 69  HLSHNQIS--------DLSPLKDL-------------------TKLEELSVNRNRLKN-- 99

Query: 469 PMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVR 528
            ++      L  L L +N+L       ++  L+NL  L +  N L               
Sbjct: 100 -LNGIPSACLSRLFLDNNELR---DTDSLIHLKNLEILSIRNNKLKS------------- 142

Query: 529 TLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSL 588
                      I  L   SKL  LDL  N+I+              + +++L+     + 
Sbjct: 143 -----------IVMLGFLSKLEVLDLHGNEIT-NTGGL---TRLKKVNWIDLTGQKCVNE 187

Query: 589 QRPYS--ISDLNLMTVLD 604
              Y   +   N +   D
Sbjct: 188 PVKYQPELYITNTVKDPD 205

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 42/246 (17%), Positives = 82/246 (33%), Gaps = 63/246 (25%)

Query: 525 SQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNL 584
           +      L    +  + + K  S + N +  ++ I   +           L+ L+LSHN 
Sbjct: 19  ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLAGMQ---FFTNLKELHLSHNQ 74

Query: 585 LSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMN 644
           +S L     + DL  +  L ++ N+L                       ++ G    S  
Sbjct: 75  ISDLS---PLKDLTKLEELSVNRNRL----------------------KNLNG--IPSAC 107

Query: 645 FTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNS 704
            +    L +N +     +++   K L +L + NNKL             I+ +  L    
Sbjct: 108 LSRL-FLDNNELRDT--DSLIHLKNLEILSIRNNKLK-----------SIVMLGFLSK-- 151

Query: 705 LSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNI 764
                         L+ LDL+ N++  T    L   +K+  +DL   K  +    +   +
Sbjct: 152 --------------LEVLDLHGNEI--TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPEL 195

Query: 765 SSLRVL 770
                +
Sbjct: 196 YITNTV 201

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 47/248 (18%), Positives = 91/248 (36%), Gaps = 30/248 (12%)

Query: 91  RIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAM 150
            I+   P   L      NL     + T++      L+ + + N  N+       +Q    
Sbjct: 8   PINQVFPDPGLANAVKQNLGKQ--SVTDL-VSQKELSGVQNFNGDNSNIQSLAGMQ--FF 62

Query: 151 TRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLV 210
           T L  L LS +       ++   +LS  L++L +L  L ++   +    +     + S  
Sbjct: 63  TNLKELHLSHN-------QIS--DLSP-LKDLTKLEELSVNRNRLKN--LN---GIPSA- 106

Query: 211 PKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSG 270
             L  L L +  L      SL  L++L ++ +  N L S V   L     L  L+L  + 
Sbjct: 107 -CLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNE 161

Query: 271 LNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNL 330
           +  T    + ++  +  +DL+G   +   +   P+     T+      +  + P  I N 
Sbjct: 162 I--TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW--ISPYYISNG 217

Query: 331 KNLSRLDL 338
            +     +
Sbjct: 218 GSYVDGCV 225

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 41/268 (15%), Positives = 83/268 (30%), Gaps = 52/268 (19%)

Query: 121 SGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQ 180
                L N    NL        +      ++ +   +  +S        +++  L+G+ Q
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQ--KELSGVQNFNGDNS-------NIQS--LAGM-Q 60

Query: 181 NLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVI 240
               L+ L+L    IS   +     L  L  KL  LS++   L      +L  + S    
Sbjct: 61  FFTNLKELHLSHNQISD--LS---PLKDL-TKLEELSVNRNRLK-----NLNGIPSA--- 106

Query: 241 CLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSL 300
                               L+ L L ++ L     ++++ +  L+ L +  N L   S+
Sbjct: 107 -------------------CLSRLFLDNNEL--RDTDSLIHLKNLEILSIRNNKL--KSI 143

Query: 301 PDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYL 360
                 S L  L L     +      +  LK ++ +DL              +L     +
Sbjct: 144 VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

Query: 361 DLSSNKFVGPIPSLHMSKNLTHLDLSNN 388
                +++ P   +    +     +   
Sbjct: 202 KDPDGRWISPY-YISNGGSYVDGCVLWE 228

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 27/152 (17%), Positives = 55/152 (36%), Gaps = 16/152 (10%)

Query: 651 LSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLS 710
                I  V P         +  +L    ++        ++S  +   N   +++     
Sbjct: 4   QRPTPINQVFP--DPGLANAVKQNLGKQSVTD--LVSQKELSG-VQNFNGDNSNIQSLAG 58

Query: 711 VTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVL 770
           + F  N  L+ L L+ NQ+  +    L +  KLE L +  N++++           L  L
Sbjct: 59  MQFFTN--LKELHLSHNQI--SDLSPLKDLTKLEELSVNRNRLKNLNGIPSAC---LSRL 111

Query: 771 VLRSNSFYGSITCRENDDSWPMLQIVDIASNN 802
            L +N     +   ++      L+I+ I +N 
Sbjct: 112 FLDNN----ELRDTDSLIHLKNLEILSIRNNK 139

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 64.7 bits (158), Expect = 4e-11
 Identities = 51/309 (16%), Positives = 100/309 (32%), Gaps = 74/309 (23%)

Query: 495 AAIQRLRNLIRLELSYNNLTVN-----ASGDSSFPSQVRTLRLASCKL-----KVIPNL- 543
                   +  L+LS NNL            ++ P+ V +L L+   L       +  + 
Sbjct: 16  EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75

Query: 544 -KSQSKLFNLDLSDNQISGEIPNWVWEIG------NGGLEYLNLSHN---------LLSS 587
               + + +L+LS N +S +      E+          +  L+L  N            +
Sbjct: 76  AAIPANVTSLNLSGNFLSYK---SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA 132

Query: 588 LQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTI 647
                +      +T L+L  N L                S++     +      ++   +
Sbjct: 133 FSNLPAS-----ITSLNLRGNDLG-------------IKSSDELIQILA-----AIPANV 169

Query: 648 -FFSLSSNSITGVIPETICRA-----KYLLVLDLSNNKLSGKMPTCLIKM----SDILGV 697
              +L  N++       + +        +  LDLS N L  K    L  +     + +  
Sbjct: 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS 229

Query: 698 LNLRGNSLSGT----LSVTFPGNCGLQTLDLNENQLGGTVPK-------SLANCRKLEVL 746
           LNL  N L G     L +       LQT+ L+ + +     +       +  N +K+ ++
Sbjct: 230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILV 289

Query: 747 DLGNNKIRD 755
           D    +I  
Sbjct: 290 DKNGKEIHP 298

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 49/286 (17%), Positives = 97/286 (33%), Gaps = 48/286 (16%)

Query: 175 LSGLLQNLAELRALYLDGVNISAPGIEW-CQALSSLVPKLRVLSLSSCYLSGPIHPSLAK 233
           +         + +L L   N+ +       QA ++    +  L+LS   L       L +
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 234 L-----QSLSVICLDQNDLSSPVPEFLADFF-----NLTSLNLSSSGLNGTFPETILQV- 282
           +      +++ + L  N LS    + L          +T L+L  +  +        Q  
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 283 ----HTLQTLDLSGNSL-------LRGSLPDFPKNSSLRTLMLSYANFS----GVLPDSI 327
                ++ +L+L GN L       L   L      +++ +L L   N +      L   +
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAI--PANVNSLNLRGNNLASKNCAELAKFL 191

Query: 328 GNL-KNLSRLDLARCNLSGSIPTSLAKL-----TQLVYLDLSSNKFVGP-----IPSLHM 376
            ++  +++ LDL+   L       LA +       +V L+L  N   GP           
Sbjct: 192 ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251

Query: 377 SKNLTHLDLSNNALPGAISSTDWEHL-------SNLVYVDLRNNAL 415
            K+L  + L  + +   +S    + L         ++ VD     +
Sbjct: 252 LKHLQTVYLDYDIV-KNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 56/320 (17%), Positives = 107/320 (33%), Gaps = 50/320 (15%)

Query: 116 ATEIPSGLGNLTNLTHLNLSN-----AGFAGQIPIQVSAMTRLVTLDLSS-SYSFGGPLK 169
           +  +         +T L+LS            I    +    + +L+LS  S  F    +
Sbjct: 11  SNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE 70

Query: 170 LENPNLSGLLQNLAELRALYLDGVNISAPGIEW-CQALSSLVPKLRVLSLSSCYLSGPIH 228
           L    +  L    A + +L L G  +S    +   + L+++   + VL L     S    
Sbjct: 71  L----VQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS 126

Query: 229 PSLAKL-----QSLSVICLDQNDLSSPVPEFLADFF-----NLTSLNLSSSGLNGTFPET 278
               +       S++ + L  NDL     + L         N+ SLNL  + L       
Sbjct: 127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAE 186

Query: 279 ILQV-----HTLQTLDLSGNSLLRGSLPDF-----PKNSSLRTLMLSYANFSGV----LP 324
           + +       ++ +LDLS N L   S  +         + + +L L      G     L 
Sbjct: 187 LAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK 246

Query: 325 DSIGNLKNLSRLDLARCNLSG-------SIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMS 377
               +LK+L  + L    +         ++  +   + +++ +D +  +   P  S+ +S
Sbjct: 247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI-HPSHSIPIS 305

Query: 378 K-------NLTHLDLSNNAL 390
                         L N  L
Sbjct: 306 NLIRELSGKADVPSLLNQCL 325

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 58.6 bits (142), Expect = 5e-09
 Identities = 47/280 (16%), Positives = 102/280 (36%), Gaps = 42/280 (15%)

Query: 374 LHMSKNLTHLDLSNNALPG----AISSTDWEHLSNLVYVDLRNNALN----GSIPRSLFS 425
             +   +T LDLS N L       +        +++  ++L  N+L       + + L +
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 426 IP-MLQQLLLANNKFGGP----IPEFSNASYSALDTLDLSANRLEGPIPMSIFEL----- 475
           IP  +  L L+ N         + +   A    +  LDL  N           +      
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 476 KNLKILMLSSNKLN--GTVQLAAIQRLRN--LIRLELSYNNLTVN-----ASGDSSFPSQ 526
            ++  L L  N L    + +L  I       +  L L  NNL        A   +S P+ 
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 527 VRTLRLASCKL------KVIPNLKS-QSKLFNLDLSDNQISGEIPNWVWEI--GNGGLEY 577
           V +L L++  L      ++     S  + + +L+L  N + G     +  +      L+ 
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257

Query: 578 LNLSHNLLSSLQRPY------SISDLNLMTVLDLHSNQLQ 611
           + L ++++ ++ +        +  ++  + ++D +  ++ 
Sbjct: 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 64.5 bits (157), Expect = 1e-10
 Identities = 61/488 (12%), Positives = 132/488 (27%), Gaps = 72/488 (14%)

Query: 99  LSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDL 158
             ++      +      A    + +     +  + L          +        V   +
Sbjct: 38  YEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWI 97

Query: 159 SSSYSFGGPLK--------LENPNLSGLLQNLAELRALYLDGV-NISAPGIEWCQALSSL 209
            +  S    L+        + +  L  + ++    + L L      S  G+    A+++ 
Sbjct: 98  EAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGL---AAIAAT 154

Query: 210 VPKLRVLSLSSCYLSGPIHPSLA-------KLQSLSVICLDQNDLSSPVPEFLADFFNLT 262
              L+ L L    +       L+        L SL++ CL      S +   +    NL 
Sbjct: 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK 214

Query: 263 SLNLSSSGLNGTFPETILQVHTLQTLDLSG------NSLLRGSLPDFPKNSSLRTLMLSY 316
           SL L+ +         + +   L+ L   G        +  G          LR L   +
Sbjct: 215 SLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFW 274

Query: 317 ANFSGVLPDSIGNLKNLSRLDLARCNLSG-SIPTSLAKLTQLVYLDLSSNKFVGPIPSLH 375
                 LP        L+ L+L+   +    +   L +  +L  L +        +  L 
Sbjct: 275 DAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA 334

Query: 376 MS-KNLTHLDLSNN---ALPGAISSTDW------EHLSNLVYVDLRNNAL-NGSIPRSLF 424
            + K+L  L +  +    +   ++ T+            L  V      + N ++     
Sbjct: 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIAR 394

Query: 425 SIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLE-----------GPIPMSIF 473
           + P + +  L   +   P              +      L                +  +
Sbjct: 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTY 454

Query: 474 E------------------------LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELS 509
                                      +L+ L +          LA   +L  +  L +S
Sbjct: 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS 514

Query: 510 YNNLTVNA 517
             +++  A
Sbjct: 515 SCSVSFGA 522

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 61.1 bits (148), Expect = 1e-09
 Identities = 64/468 (13%), Positives = 130/468 (27%), Gaps = 57/468 (12%)

Query: 100 SLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSA-MTRLVTLDL 158
                  +   +  +    I +   + T L  + L            ++        L L
Sbjct: 78  HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL 137

Query: 159 SSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSL 218
           SS   F          L+ +      L+ L L   ++      W          L  L++
Sbjct: 138 SSCEGFS------TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNI 191

Query: 219 SSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPET 278
           S    +  +  S   L+ L   C                  NL SL L+ +         
Sbjct: 192 SCL--ASEVSFSA--LERLVTRCP-----------------NLKSLKLNRAVPLEKLATL 230

Query: 279 ILQVHTLQTLDLSG------NSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKN 332
           + +   L+ L   G        +  G          LR L   +      LP        
Sbjct: 231 LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR 290

Query: 333 LSRLDLARCNLSG-SIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMS-KNLTHLDLSNN-- 388
           L+ L+L+   +    +   L +  +L  L +        +  L  + K+L  L +  +  
Sbjct: 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEP 350

Query: 389 -ALPGAISSTDW------EHLSNLVYVDLRNNAL-NGSIPRSLFSIPMLQQLLLANNKFG 440
             +   ++ T+            L  V      + N ++     + P + +  L   +  
Sbjct: 351 FVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPK 410

Query: 441 GPIPEFSNASYSALDTLDLSANRLE----------GPIPMSIFELKNLKILMLSSNKLNG 490
            P              +      L                     K +++L ++    + 
Sbjct: 411 APDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSD 470

Query: 491 TVQLAAIQRLRNLIRLELSYNNLTVNASGD-SSFPSQVRTLRLASCKL 537
                 +    +L +LE+        A    +S    +R+L ++SC +
Sbjct: 471 LGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.4 bits (128), Expect = 3e-07
 Identities = 78/544 (14%), Positives = 162/544 (29%), Gaps = 83/544 (15%)

Query: 233 KLQSLSVICLDQNDLSSPVPEFLADFF-NLTSLNLSSSGLNGTFPETILQVHTLQTLDLS 291
           +++      +   +  +  P  +   F  + S+ L        F             D  
Sbjct: 39  EIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFN---------LVPDGW 89

Query: 292 GNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIG-NLKNLSRLDLARCNL--SGSIP 348
           G  +           + L  + L     +    + I  + KN   L L+ C    +  + 
Sbjct: 90  GGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLA 149

Query: 349 TSLAKLTQLVYLDLSSNKFVGPIPS-----LHMSKNLTHLDLSNNALPGAISSTDWEHLS 403
              A    L  LDL  +                  +L  L++S   L   +S +  E L 
Sbjct: 150 AIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISC--LASEVSFSALERLV 207

Query: 404 ----NLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSA-----L 454
               NL  + L        +   L   P L++L             +S  S +      L
Sbjct: 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKEL 267

Query: 455 DTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLT 514
             L    + +   +P        L  L LS   +     +  + +   L RL +      
Sbjct: 268 RCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI-- 325

Query: 515 VNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGG 574
                D+       T            +L+       L +  ++     PN    +   G
Sbjct: 326 ----EDAGLEVLASTC----------KDLRE------LRVFPSEPFVMEPNV--ALTEQG 363

Query: 575 LEYLNLSHNLLSSL-QRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTS 633
           L  +++    L S+      +++  L+T+     N  +  +        +++     + +
Sbjct: 364 LVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRL-------CIIEPKAPDYLT 416

Query: 634 SIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSD 693
             P DIG       F ++  +             K L  L LS   L+ K+   +   + 
Sbjct: 417 LEPLDIG-------FGAIVEH------------CKDLRRLSLSGL-LTDKVFEYIGTYAK 456

Query: 694 ILGVLNLRGNSLSGT-LSVTFPGNCGLQTLDLNENQLGG-TVPKSLANCRKLEVLDLGNN 751
            + +L++     S   +     G   L+ L++ +   G   +  + +    +  L + + 
Sbjct: 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516

Query: 752 KIRD 755
            +  
Sbjct: 517 SVSF 520

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 27/155 (17%), Positives = 61/155 (39%), Gaps = 22/155 (14%)

Query: 457 LDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVN 516
           L      +E  +  ++  LK  K L LS+N +    +++++  + NL  L L  N +   
Sbjct: 30  LHGMIPPIEK-MDATLSTLKACKHLALSTNNI---EKISSLSGMENLRILSLGRNLIK-K 84

Query: 517 ASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQIS--------GEIPNWVW 568
                +    +  L ++  ++  +  ++    L  L +S+N+I+          +     
Sbjct: 85  IENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK--- 141

Query: 569 EIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVL 603
                 LE L L+ N L +  +  + +    + V+
Sbjct: 142 ------LEDLLLAGNPLYNDYKENNATSEYRIEVV 170

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 503 LIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGE 562
            + L      +    +  S+  +  + L L++  ++ I +L     L  L L  N I  +
Sbjct: 27  KVELHGMIPPIEKMDATLSTLKA-CKHLALSTNNIEKISSLSGMENLRILSLGRNLIK-K 84

Query: 563 IPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQ 611
           I N   +     LE L +S+N ++SL     I  L  + VL + +N++ 
Sbjct: 85  IENL--DAVADTLEELWISYNQIASLS---GIEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 30/147 (20%), Positives = 49/147 (33%), Gaps = 18/147 (12%)

Query: 650 SLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDI-----LGVLNLRGNS 704
                 I   +  T+   K    L LS N +         K+S +     L +L+L  N 
Sbjct: 31  HGMIPPIEK-MDATLSTLKACKHLALSTNNIE--------KISSLSGMENLRILSLGRNL 81

Query: 705 LSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFP-CWLKN 763
           +   +         L+ L ++ NQ+       +     L VL + NNKI +      L  
Sbjct: 82  IK-KIENLDAVADTLEELWISYNQI--ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAA 138

Query: 764 ISSLRVLVLRSNSFYGSITCRENDDSW 790
           +  L  L+L  N  Y           +
Sbjct: 139 LDKLEDLLLAGNPLYNDYKENNATSEY 165

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 38/203 (18%), Positives = 66/203 (32%), Gaps = 39/203 (19%)

Query: 340 RCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDW 399
                  + T      + V L            +L   K   HL LS N +         
Sbjct: 14  FEERKSVVATEA----EKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI------EKI 63

Query: 400 EHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSN--ASYSALDTL 457
             LS +                       L+ L L  N     I +  N  A    L+ L
Sbjct: 64  SSLSGM---------------------ENLRILSLGRNL----IKKIENLDAVADTLEEL 98

Query: 458 DLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNA 517
            +S N++     +   +L NL++L +S+NK+    ++  +  L  L  L L+ N L  + 
Sbjct: 99  WISYNQIASLSGIE--KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156

Query: 518 SGDSSFPSQVRTLRLASCKLKVI 540
             +++       +      LK +
Sbjct: 157 KENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 36/161 (22%), Positives = 57/161 (35%), Gaps = 36/161 (22%)

Query: 307 SSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNK 366
            + + L LS  N   +   S+  ++NL  L L R  +   I    A    L  L +S N+
Sbjct: 48  KACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQ 104

Query: 367 FVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWE------HLSNLVYVDLRNNALNGSIP 420
            +  +  +    NL  L +SNN +      T+W        L  L  + L  N L     
Sbjct: 105 -IASLSGIEKLVNLRVLYMSNNKI------TNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157

Query: 421 RS----------LFSIPMLQQL----------LLANNKFGG 441
            +          +  +P L++L            AN   GG
Sbjct: 158 ENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQANVARGG 198

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 28/170 (16%), Positives = 54/170 (31%), Gaps = 42/170 (24%)

Query: 99  LSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDL 158
           +     + + L   +    ++ + L  L    HL LS                       
Sbjct: 20  VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE------------------ 61

Query: 159 SSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSL 218
                     K+ +      L  +  LR L L    I        + L ++   L  L +
Sbjct: 62  ----------KISS------LSGMENLRILSLGRNLIKK-----IENLDAVADTLEELWI 100

Query: 219 SSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVP-EFLADFFNLTSLNLS 267
           S   ++  +   + KL +L V+ +  N +++    + LA    L  L L+
Sbjct: 101 SYNQIAS-LSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 60.1 bits (146), Expect = 5e-10
 Identities = 47/160 (29%), Positives = 65/160 (40%), Gaps = 16/160 (10%)

Query: 286 QTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSG 345
           + LDL    L   S   F   + L  L L Y     +      +L  L  L LA   L+ 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 346 SIPTSL-AKLTQLVYLDLSSNKFVGPIPSLHMSK--NLTHLDLSNN---ALP-GAISSTD 398
           S+P  +   LTQL  L L  N+    +PS    +   L  L L+ N   ++P GA     
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK-- 153

Query: 399 WEHLSNLVYVDLRNNALNGSIPRSLF-SIPMLQQLLLANN 437
              L+NL  + L  N L  S+P   F  +  LQ + L  N
Sbjct: 154 ---LTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 56.6 bits (137), Expect = 9e-09
 Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 7/154 (4%)

Query: 381 THLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPM-LQQLLLANNKF 439
             LDL +  L   +S   +  L+ L +++L  N L  ++   +F     L  L LANN+ 
Sbjct: 38  EKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQL 95

Query: 440 GGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFE-LKNLKILMLSSNKLNGTVQLAAIQ 498
              +P       + LD L L  N+L+  +P  +F+ L  LK L L++N+L  ++   A  
Sbjct: 96  AS-LPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFD 152

Query: 499 RLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRL 532
           +L NL  L LS N L     G      +++T+ L
Sbjct: 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%)

Query: 479 KILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLK 538
           + L L S  L  T+  A  + L  L  L L YN L   ++G     +++ TL LA+ +L 
Sbjct: 38  EKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96

Query: 539 VIPNL--KSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISD 596
            +P       ++L  L L  NQ+   +P+ V++     L+ L L+ N L S+  P    D
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFD-RLTKLKELRLNTNQLQSI--PAGAFD 152

Query: 597 -LNLMTVLDLHSNQLQGNIPH 616
            L  +  L L +NQLQ ++PH
Sbjct: 153 KLTNLQTLSLSTNQLQ-SVPH 172

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 33/131 (25%), Positives = 45/131 (34%), Gaps = 5/131 (3%)

Query: 624 VDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGK 683
           VD    S  S +P  I      T    L S  +  +   T      L  L+L  N+L   
Sbjct: 19  VDCQGKSLDS-VPSGIPAD---TEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-T 73

Query: 684 MPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKL 743
           +   +      LG L L  N L+      F     L  L L  NQL            KL
Sbjct: 74  LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL 133

Query: 744 EVLDLGNNKIR 754
           + L L  N+++
Sbjct: 134 KELRLNTNQLQ 144

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 41/180 (22%), Positives = 63/180 (35%), Gaps = 32/180 (17%)

Query: 576 EYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSI 635
           E L+L    L++L    +   L  +T L+L  NQLQ                      ++
Sbjct: 38  EKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQLQ----------------------TL 74

Query: 636 PGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMP----TCLIKM 691
              + + +       L++N +  +          L  L L  N+L   +P      L K 
Sbjct: 75  SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTK- 132

Query: 692 SDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNN 751
              L  L L  N L    +  F     LQTL L+ NQL      +     KL+ + L  N
Sbjct: 133 ---LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 61.0 bits (148), Expect = 6e-10
 Identities = 50/264 (18%), Positives = 105/264 (39%), Gaps = 22/264 (8%)

Query: 96  SPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVT 155
           +   S   +Q ++L+ ++   + +   L   + L +L+L     +  I   ++  + LV 
Sbjct: 87  AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 146

Query: 156 LDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDG-VNISAPGIEWCQALSSLVPKLR 214
           L+LS    F          L  LL + + L  L L    + +   ++   A++ +   + 
Sbjct: 147 LNLSGCSGFS------EFALQTLLSSCSRLDELNLSWCFDFTEKHVQ--VAVAHVSETIT 198

Query: 215 VLSLSSCYLS------GPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSS 268
            L+LS    +        +      L  L +       L +   +       L  L+LS 
Sbjct: 199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM--LKNDCFQEFFQLNYLQHLSLSR 256

Query: 269 -SGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSI 327
              +       + ++ TL+TL + G  +  G+L    +  +L  L ++ ++F+ +   +I
Sbjct: 257 CYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKE--ALPHLQINCSHFTTIARPTI 313

Query: 328 GNLKNLSRLDLARCNLSGSIPTSL 351
           GN KN     + +C L+   P+ L
Sbjct: 314 GNKKNQEIWGI-KCRLTLQKPSCL 336

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 44/231 (19%), Positives = 70/231 (30%), Gaps = 39/231 (16%)

Query: 292 GNSLLRGSLPDFPKNSSLRTLMLSYANFS-GVLPDSIGNLKNLSRLDLARCNLSGSIPTS 350
             S +   L +      ++ + LS +      L   +     L  L L    LS  I  +
Sbjct: 78  PRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT 137

Query: 351 LAKLTQLVYLDLSSNKFVGPIPSLHMS---KNLTHLDLSNNALPGAISSTDWEHLSNLVY 407
           LAK + LV L+LS            +      L  L+LS                     
Sbjct: 138 LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC------------------- 178

Query: 408 VDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSA-------LDTLDLS 460
            D     +  ++         + QL L+     G       +  S        L  LDLS
Sbjct: 179 FDFTEKHVQVAVAHVS---ETITQLNLS-----GYRKNLQKSDLSTLVRRCPNLVHLDLS 230

Query: 461 -ANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSY 510
            +  L+       F+L  L+ L LS         L  +  +  L  L++  
Sbjct: 231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 30/165 (18%)

Query: 371 IPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQ 430
           IP+ ++ + +T + L  N +   I    +     L  +DL NN ++  +    F     Q
Sbjct: 26  IPT-NLPETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAF-----Q 77

Query: 431 QLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFE-LKNLKILMLSSNKLN 489
            L                    +L++L L  N++   +P S+FE L +L++L+L++NK+N
Sbjct: 78  GL-------------------RSLNSLVLYGNKITE-LPKSLFEGLFSLQLLLLNANKIN 117

Query: 490 GTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLAS 534
             +++ A Q L NL  L L  N L   A G  S    ++T+ LA 
Sbjct: 118 -CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 5/133 (3%)

Query: 332 NLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVG-PIPSLHMSKNLTHLDLSNNAL 390
            ++ + L +  +    P + +   +L  +DLS+N+       +    ++L  L L  N +
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92

Query: 391 PGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLF-SIPMLQQLLLANNKFGGPIPEFSNA 449
              +  + +E L +L  + L  N +N  +    F  +  L  L L +NK    I + + +
Sbjct: 93  -TELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFS 149

Query: 450 SYSALDTLDLSAN 462
              A+ T+ L+ N
Sbjct: 150 PLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 16/139 (11%)

Query: 307 SSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPT-SLAKLTQLVYLDLSSN 365
            ++  + L       + P +    K L R+DL+   +S  +   +   L  L  L L  N
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGN 90

Query: 366 KFVGPIPS--LHMSKNLTHLDLSNNAL----PGAISSTDWEHLSNLVYVDLRNNALNGSI 419
           K    +P        +L  L L+ N +      A      + L NL  + L +N L  +I
Sbjct: 91  KITE-LPKSLFEGLFSLQLLLLNANKINCLRVDAF-----QDLHNLNLLSLYDNKLQ-TI 143

Query: 420 PRSLF-SIPMLQQLLLANN 437
            +  F  +  +Q + LA N
Sbjct: 144 AKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 31/139 (22%), Positives = 57/139 (41%), Gaps = 21/139 (15%)

Query: 455 DTLDLSANRLEGPIPMSIF-ELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNL 513
             + L  N ++  IP   F   K L+ + LS+N+++  +   A Q LR+L  L L  N +
Sbjct: 35  TEIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI 92

Query: 514 TVNASGDSSFPSQV-------RTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEIP 564
           T         P  +       + L L + K+  +     +    L  L L DN++   I 
Sbjct: 93  T-------ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIA 144

Query: 565 NWVWEIGNGGLEYLNLSHN 583
              +      ++ ++L+ N
Sbjct: 145 KGTFS-PLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 12/130 (9%)

Query: 242 LDQNDLSSPVPEFLADFFNLTSLNLSSSGL----NGTFPETILQVHTLQTLDLSGNSLLR 297
           L+QN +    P   + +  L  ++LS++ +       F      + +L +L L GN +  
Sbjct: 39  LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF----QGLRSLNSLVLYGNKI-- 92

Query: 298 GSLPD--FPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLT 355
             LP   F    SL+ L+L+    + +  D+  +L NL+ L L    L      + + L 
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 356 QLVYLDLSSN 365
            +  + L+ N
Sbjct: 153 AIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.0 bits (120), Expect = 8e-07
 Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 5/154 (3%)

Query: 624 VDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGK 683
           VD      T  IP ++  +        L  N+I  + P      K L  +DLSNN++S  
Sbjct: 16  VDCRGKGLTE-IPTNLPET---ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL 71

Query: 684 MPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKL 743
            P     +   L  L L GN ++      F G   LQ L LN N++      +  +   L
Sbjct: 72  APDAFQGLRS-LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNL 130

Query: 744 EVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSF 777
            +L L +NK++         + +++ + L  N F
Sbjct: 131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 6/98 (6%)

Query: 521 SSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYL 578
           ++ P  +  +RL    +KVIP        KL  +DLS+NQIS E+    ++ G   L  L
Sbjct: 28  TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQ-GLRSLNSL 85

Query: 579 NLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPH 616
            L  N ++ L        L  + +L L++N++   +  
Sbjct: 86  VLYGNKITELP-KSLFEGLFSLQLLLLNANKIN-CLRV 121

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 56/231 (24%), Positives = 96/231 (41%), Gaps = 37/231 (16%)

Query: 284 TLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNL 343
                +L   S+         + +S+  ++ +                          + 
Sbjct: 20  ETIKANLKKKSV--TDAVTQNELNSIDQIIANN-------------------------SD 52

Query: 344 SGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLS 403
             S+   +  L  + YL L  NK    I +L    NLT+L L+ N L  ++ +  ++ L+
Sbjct: 53  IKSVQ-GIQYLPNVRYLALGGNKLH-DISALKELTNLTYLILTGNQL-QSLPNGVFDKLT 109

Query: 404 NLVYVDLRNNALNGSIPRSLFSIPM-LQQLLLANNKFGGPIPEFSNASYSALDTLDLSAN 462
           NL  + L  N L  S+P  +F     L  L LA+N+    +P+      + L  LDLS N
Sbjct: 110 NLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYN 167

Query: 463 RLEGPIPMSIFE-LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNN 512
           +L+  +P  +F+ L  LK L L  N+L  +V      RL +L  + L ++N
Sbjct: 168 QLQS-LPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWL-HDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 56.9 bits (138), Expect = 8e-09
 Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 28/188 (14%)

Query: 262 TSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSG 321
              NL    +  T   T  +++++  +  + + +   S+       ++R L L       
Sbjct: 22  IKANLKKKSV--TDAVTQNELNSIDQIIANNSDI--KSVQGIQYLPNVRYLALGGNKLH- 76

Query: 322 VLPDSIG---NLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKF----VGPIPSL 374
                I     L NL+ L L    L         KLT L  L L  N+      G    L
Sbjct: 77  ----DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL 132

Query: 375 HMSKNLTHLDLSNN---ALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLF-SIPMLQ 430
               NLT+L+L++N   +LP  +    ++ L+NL  +DL  N L  S+P  +F  +  L+
Sbjct: 133 ---TNLTYLNLAHNQLQSLPKGV----FDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLK 184

Query: 431 QLLLANNK 438
            L L  N+
Sbjct: 185 DLRLYQNQ 192

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 14/160 (8%)

Query: 455 DTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLT 514
              +L    +   +  +  EL ++  ++ +++ +     +  IQ L N+  L L  N L 
Sbjct: 22  IKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS---VQGIQYLPNVRYLALGGNKLH 76

Query: 515 VNASGDSSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEIPNWVWEIGN 572
             ++      + +  L L   +L+ +PN      + L  L L +NQ+   +P+ V++   
Sbjct: 77  DISALKE--LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFD-KL 132

Query: 573 GGLEYLNLSHNLLSSLQRPYSISD-LNLMTVLDLHSNQLQ 611
             L YLNL+HN L SL  P  + D L  +T LDL  NQLQ
Sbjct: 133 TNLTYLNLAHNQLQSL--PKGVFDKLTNLTELDLSYNQLQ 170

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 56/196 (28%), Positives = 82/196 (41%), Gaps = 26/196 (13%)

Query: 229 PSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLN--GTFPETILQVHTLQ 286
            +  +L S+  I  + +D+ S V        N+  L L  + L+      E       L 
Sbjct: 35  VTQNELNSIDQIIANNSDIKS-VQGI-QYLPNVRYLALGGNKLHDISALKELT----NLT 88

Query: 287 TLDLSGNSLLRGSLPD--FPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLS 344
            L L+GN L   SLP+  F K ++L+ L+L       +       L NL+ L+LA   L 
Sbjct: 89  YLILTGNQL--QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ 146

Query: 345 GSIPTSL-AKLTQLVYLDLSSNKFVGPIPSLHMSK--NLTHLDLSNNALP----GAISST 397
            S+P  +  KLT L  LDLS N+    +P     K   L  L L  N L     G     
Sbjct: 147 -SLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR- 203

Query: 398 DWEHLSNLVYVDLRNN 413
               L++L Y+ L +N
Sbjct: 204 ----LTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 50/254 (19%), Positives = 80/254 (31%), Gaps = 56/254 (22%)

Query: 514 TVNASGDS--SFPSQV----RTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGE--IPN 565
           T+  S      FP           L    +         + +  +  +++ I     I  
Sbjct: 2   TITVSTPIKQIFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQY 61

Query: 566 WVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQ---GNIPHPPRNAV 622
                    + YL L  N L  +     +++L   T L L  NQLQ     +     N  
Sbjct: 62  LP------NVRYLALGGNKLHDISALKELTNL---TYLILTGNQLQSLPNGVFDKLTNLK 112

Query: 623 LVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSG 682
            +    N   S   G         +F  L++                L  L+L++N+L  
Sbjct: 113 ELVLVENQLQSLPDG---------VFDKLTN----------------LTYLNLAHNQLQ- 146

Query: 683 KMPT----CLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPK-SL 737
            +P      L      L  L+L  N L       F     L+ L L +NQL  +VP    
Sbjct: 147 SLPKGVFDKLTN----LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL-KSVPDGVF 201

Query: 738 ANCRKLEVLDLGNN 751
                L+ + L +N
Sbjct: 202 DRLTSLQYIWLHDN 215

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 60.1 bits (145), Expect = 1e-09
 Identities = 22/99 (22%), Positives = 31/99 (31%), Gaps = 1/99 (1%)

Query: 293 NSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPD-SIGNLKNLSRLDLARCNLSGSIPTSL 351
                 SL   P   +L  L +        L    +  L  L  L + +  L    P + 
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 352 AKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNAL 390
               +L  L+LS N             +L  L LS N L
Sbjct: 77  HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.7 bits (123), Expect = 7e-07
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 1/91 (1%)

Query: 468 IPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQV 527
               +   +NL  L + + +    ++L  ++ L  L  L +  + L   A     F  ++
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 528 RTLRLASCKLKVIP-NLKSQSKLFNLDLSDN 557
             L L+   L+ +         L  L LS N
Sbjct: 83  SRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 4/95 (4%)

Query: 276 PETILQVHTLQTLDLSGNSLLRGSLPD--FPKNSSLRTLMLSYANFSGVLPDSIGNLKNL 333
              +     L  L +     L+  L          LR L +  +    V PD+      L
Sbjct: 24  LHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 334 SRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFV 368
           SRL+L+   L  S+     +   L  L LS N   
Sbjct: 83  SRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 4e-06
 Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 26/130 (20%)

Query: 360 LDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSI 419
           L  + +  +  +  L  ++NLT L + N      +   D   L  L  + +  + L   +
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FV 71

Query: 420 PRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLK 479
               F                             L  L+LS N LE  +     +  +L+
Sbjct: 72  APDAFH------------------------FTPRLSRLNLSFNALES-LSWKTVQGLSLQ 106

Query: 480 ILMLSSNKLN 489
            L+LS N L+
Sbjct: 107 ELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 3e-05
 Identities = 24/128 (18%), Positives = 39/128 (30%), Gaps = 29/128 (22%)

Query: 486 NKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPN--L 543
            +      L  +    NL  L +                            L+ +    L
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQ-----------------------HLQHLELRDL 52

Query: 544 KSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVL 603
           +   +L NL +  + +   +    +      L  LNLS N L SL    ++  L+L   L
Sbjct: 53  RGLGELRNLTIVKSGLR-FVAPDAFH-FTPRLSRLNLSFNALESLS-WKTVQGLSL-QEL 108

Query: 604 DLHSNQLQ 611
            L  N L 
Sbjct: 109 VLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 3e-04
 Identities = 27/133 (20%), Positives = 39/133 (29%), Gaps = 36/133 (27%)

Query: 115 NATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPN 174
            A +    L    NLT L + N                L  L+                 
Sbjct: 19  GALDSLHHLPGAENLTELYIEN-------------QQHLQHLE----------------- 48

Query: 175 LSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKL 234
               L+ L ELR L +    +    +    A     P+L  L+LS   L   +     + 
Sbjct: 49  -LRDLRGLGELRNLTIVKSGLRF--VAP-DAFHFT-PRLSRLNLSFNALES-LSWKTVQG 102

Query: 235 QSLSVICLDQNDL 247
            SL  + L  N L
Sbjct: 103 LSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 7e-04
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 2/84 (2%)

Query: 695 LGVLNLRGNSLSGTL-SVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKI 753
           L  L +        L      G   L+ L + ++ L    P +     +L  L+L  N +
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92

Query: 754 RDTFPCWLKNISSLRVLVLRSNSF 777
                  ++   SL+ LVL  N  
Sbjct: 93  ESLSWKTVQG-LSLQELVLSGNPL 115

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 56/326 (17%), Positives = 102/326 (31%), Gaps = 56/326 (17%)

Query: 105 QSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSA--------MTRLVTL 156
           + L+  F  +           L++L  LNL+        P++ +            L  +
Sbjct: 50  ELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMT---PVKCTVVAAVLGSGRHALDEV 106

Query: 157 DLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEW-CQALSSLVPKLRV 215
           +L+S        +L+   L  LL      R L L   ++     +     L     ++  
Sbjct: 107 NLASC-------QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITT 159

Query: 216 LSLSSCYLSGP----IHPSLAKLQSLSVICLDQNDLSSPVPEFLADFF----NLTSLNLS 267
           L LS+  L+      +   LA   S++ + L    L     E LA        L  LN++
Sbjct: 160 LRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA 219

Query: 268 SSGLNGT----FPETILQVHTLQTLDLSGNSL-------LRGSLPDFPKNSSLRTLMLSY 316
            +G   T          +  +L+ L L  N L       LR         + +   +   
Sbjct: 220 YNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEG 279

Query: 317 ANFSGVLPDSIGN-LKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKF--VGPI-- 371
              S      +    +NL+  D AR            +  +L+  DL  ++   + P   
Sbjct: 280 TAVSEYWSVILSEVQRNLNSWDRARVQ----------RHLELLLRDLEDSRGATLNPWRK 329

Query: 372 -PSLHMSKNLTHLDLSNNAL--PGAI 394
              L +   +  L     +   P   
Sbjct: 330 AQLLRVEGEVRALLEQLGSSGSPSGS 355

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 52.4 bits (126), Expect = 5e-07
 Identities = 27/147 (18%), Positives = 47/147 (31%), Gaps = 18/147 (12%)

Query: 649 FSLSSNSITGVIPETICRA-----KYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGN 703
            +L+   +T V    +          L  ++L++ +L       L+ +      L L+ N
Sbjct: 77  LNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136

Query: 704 SLSGT----LSVTFPGN-CGLQTLDLNENQLGGTVPKSLA----NCRKLEVLDLGNNKIR 754
           SL       L      + C + TL L+ N L       L         +  L L +  + 
Sbjct: 137 SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196

Query: 755 DTFPCW----LKNISSLRVLVLRSNSF 777
           D         L     L+ L +  N  
Sbjct: 197 DEGLELLAAQLDRNRQLQELNVAYNGA 223

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 44/298 (14%), Positives = 92/298 (30%), Gaps = 62/298 (20%)

Query: 452 SALDTLDLSANRLEGPIPMSIFEL-----KNLKILMLSSNKLNGTVQLAAIQRLRNLIRL 506
           S+L  L+L+  R+       +  +       L  + L+S +L+       +       +L
Sbjct: 72  SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKL 131

Query: 507 ELSYNNLTVN-----ASGDSSFPSQVRTLRLASCKLKVI------PNLKSQSKLFNLDLS 555
            L  N+L                 Q+ TLRL++  L           L   + + +L L 
Sbjct: 132 GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL 191

Query: 556 DNQISGEIPNWVWEIG-----NGGLEYLNLSHN---------LLSSLQRPYSISDLNLMT 601
              +  E    +  +      N  L+ LN+++N         L  + +   S+       
Sbjct: 192 HTGLGDE---GLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSL------E 242

Query: 602 VLDLHSNQLQ----------GNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSL 651
           +L L+ N+L           G         V+      + +      +            
Sbjct: 243 LLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSE--------VQ 294

Query: 652 SSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCL---IKMSDILGVLNLRGNSLS 706
            +          + R   LL+ DL +++ +   P      +++   +  L  +  S  
Sbjct: 295 RNL--NSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 48.6 bits (116), Expect = 7e-06
 Identities = 30/154 (19%), Positives = 51/154 (33%), Gaps = 29/154 (18%)

Query: 650 SLSSNSITGVIPETICRA-----KYLLVLDLSNNKLSGKMPTCLIKMSDILGV------L 698
            L  NS+     + +          +  L LSNN L+      +  + + L        L
Sbjct: 132 GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT---AAGVAVLMEGLAGNTSVTHL 188

Query: 699 NLRGNSLSGT----LSVTFPGNCGLQTLDLNENQLGGTVPKSLA----NCRKLEVLDLGN 750
           +L    L       L+     N  LQ L++  N  G T   +LA        LE+L L  
Sbjct: 189 SLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF 248

Query: 751 NKIRDTFPCWL-------KNISSLRVLVLRSNSF 777
           N++       L       +  + + V +    + 
Sbjct: 249 NELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 57/337 (16%), Positives = 97/337 (28%), Gaps = 89/337 (26%)

Query: 283 HTLQTLDLSGNSL-----------LRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGN-L 330
            +L+ L+L+G  +           L           +L  + L+          ++    
Sbjct: 72  SSLRQLNLAGVRMTPVKCTVVAAVLGSG------RHALDEVNLASCQLDPAGLRTLLPVF 125

Query: 331 KNLSRLDLARCNLSGSIPTSLAKL-----TQLVYLDLSSNKF----VGPI-PSLHMSKNL 380
               +L L   +L       L  L      Q+  L LS+N      V  +   L  + ++
Sbjct: 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSV 185

Query: 381 THLDLSNNAL--PGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNK 438
           THL L +  L   G       E L+      L  N               LQ+L +A N 
Sbjct: 186 THLSLLHTGLGDEGL------ELLAAQ----LDRN-------------RQLQELNVAYNG 222

Query: 439 FGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKL--NGTVQLA- 495
            G       + +  AL       +              +L++L L  N+L   G   L  
Sbjct: 223 AG-------DTAALALARA-AREH-------------PSLELLHLYFNELSSEGRQVLRD 261

Query: 496 AIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLS 555
                    R+ +S       A  +          R  +        ++   +L   DL 
Sbjct: 262 LGGAAEGGARVVVS--LTEGTAVSEYWSVILSEVQR--NLNSWDRARVQRHLELLLRDLE 317

Query: 556 DNQISGEIPNWVWEIG-----NGGLEYLNLSHNLLSS 587
           D++ +   P   W         G +  L        S
Sbjct: 318 DSRGATLNP---WRKAQLLRVEGEVRALLEQLGSSGS 351

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 59.6 bits (143), Expect = 2e-09
 Identities = 30/201 (14%), Positives = 63/201 (31%), Gaps = 20/201 (9%)

Query: 173 PNLSGLLQNLAELRALYLDGVNISAPGIEWCQA--LSSLVPKLRVLSLSSCYLSGPIHPS 230
             +    +  A    L+   ++     I W +   LS ++  + +L+      +  +   
Sbjct: 129 DGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIG 188

Query: 231 LAKLQSLSVICLDQNDLSSPVPEFLA--DFFNLTSLNLSSSGLNGTFPETILQVH----- 283
                +L  + +    L   V E +   D  NL  L L     +  F   +         
Sbjct: 189 KKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248

Query: 284 ----TLQTLDLSGNSL---LRGSLPDFPKNSSLRTLMLSYANFSGV----LPDSIGNLKN 332
                L+ L +        +     +      L T+ +S    +      L D +  +K+
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308

Query: 333 LSRLDLARCNLSGSIPTSLAK 353
           L  +++    LS  +   L K
Sbjct: 309 LKFINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 51.1 bits (121), Expect = 1e-06
 Identities = 30/194 (15%), Positives = 59/194 (30%), Gaps = 29/194 (14%)

Query: 332 NLSRLDLARCNLS----GSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSN 387
               +D     +S      +   L  +  L  L +     +          NL  L++ +
Sbjct: 145 FWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPR--PNLKSLEIIS 202

Query: 388 NALPG-AISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEF 446
             LP   +       L NL  + L     +                   +       P F
Sbjct: 203 GGLPDSVVEDILGSDLPNLEKLVLYVGVED----------------YGFDGDMNVFRPLF 246

Query: 447 SNASYSALDTLDLSANRLEGPIPMSIFE---LKNLKILMLSSNKL--NGTVQLA-AIQRL 500
           S   +  L  L +     +  +     E   L  L+ + +S+  L   G   L   + ++
Sbjct: 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKI 306

Query: 501 RNLIRLELSYNNLT 514
           ++L  + + YN L+
Sbjct: 307 KHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.0 bits (118), Expect = 2e-06
 Identities = 29/177 (16%), Positives = 58/177 (32%), Gaps = 19/177 (10%)

Query: 82  DLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPS-GLGNLTNLTHLNL----SN 136
            L+   I G  + S        L+SL +       + +      +L NL  L L     +
Sbjct: 173 LLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVED 232

Query: 137 AGFAGQIP-----IQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQ--NLAELRALY 189
            GF G +              L  L +  +       + +N  +   L+   L +L  + 
Sbjct: 233 YGFDGDMNVFRPLFSKDRFPNLKWLGIVDA-------EEQNVVVEMFLESDILPQLETMD 285

Query: 190 LDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQND 246
           +    ++  G          +  L+ +++   YLS  +   L K   + +   D  +
Sbjct: 286 ISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQE 342

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.4 bits (114), Expect = 8e-06
 Identities = 26/157 (16%), Positives = 55/157 (35%), Gaps = 21/157 (13%)

Query: 285 LQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIG--NLKNLSRLDLARCN 342
           L  L + G + L       P    L++L +        + + I   +L NL +L L    
Sbjct: 174 LNNLKIKGTNNLSIGKKPRPN---LKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGV 230

Query: 343 LSGSIPTSLAKLT---------QLVYLDLSSNKFVGPIPSLHMS----KNLTHLDLSNNA 389
                   +              L +L +   +    +  + +       L  +D+S   
Sbjct: 231 EDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290

Query: 390 L--PGAISSTD-WEHLSNLVYVDLRNNALNGSIPRSL 423
           L   GA    D  + + +L +++++ N L+  + + L
Sbjct: 291 LTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL 327

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.6 bits (99), Expect = 4e-04
 Identities = 23/176 (13%), Positives = 50/176 (28%), Gaps = 33/176 (18%)

Query: 399 WEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGP-IPEFSNASYSALDTL 457
            + +  L  + ++      ++       P L+ L + +       + +   +    L+ L
Sbjct: 168 LDAMPLLNNLKIKGT---NNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKL 224

Query: 458 DLSANRLEGPIPMSIFEL---------KNLKILMLSSNKL--NGTVQLAAIQRLRNLIRL 506
            L     +      +             NLK L +   +              L  L  +
Sbjct: 225 VLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETM 284

Query: 507 ELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGE 562
           ++S   LT    G                 +  I +LK       +++  N +S E
Sbjct: 285 DISAGVLT--DEGARLLLDH----------VDKIKHLKF------INMKYNYLSDE 322

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.6 bits (99), Expect = 5e-04
 Identities = 12/92 (13%), Positives = 35/92 (38%), Gaps = 7/92 (7%)

Query: 670 LLVLDLSNNKLSGKMPTCLIKMSDI--LGVLNLRGNSLSGT----LSVTFPGNCGLQTLD 723
           L  L + + +    +    ++   +  L  +++    L+      L         L+ ++
Sbjct: 254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFIN 313

Query: 724 LNENQLGGTVPKSLANCRKLEVLDLGNNKIRD 755
           +  N L   + K L     +++ D+ +++  D
Sbjct: 314 MKYNYLSDEMKKELQKSLPMKI-DVSDSQEYD 344

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.2 bits (98), Expect = 6e-04
 Identities = 27/156 (17%), Positives = 56/156 (35%), Gaps = 23/156 (14%)

Query: 451 YSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKL-NGTVQLAAIQRLRNLIRLELS 509
             A+  L+    +    + +      NLK L + S  L +  V+      L NL +L L 
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227

Query: 510 YNNLTVNASGDSS------------FPSQVRTLRLASCKL-----KVIPNLKSQSKLFNL 552
                 +   D              FP+ ++ L +   +      ++        +L  +
Sbjct: 228 VG--VEDYGFDGDMNVFRPLFSKDRFPN-LKWLGIVDAEEQNVVVEMFLESDILPQLETM 284

Query: 553 DLSDNQISGEIPNWVWEI--GNGGLEYLNLSHNLLS 586
           D+S   ++ E    + +       L+++N+ +N LS
Sbjct: 285 DISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 60.0 bits (145), Expect = 3e-09
 Identities = 64/525 (12%), Positives = 148/525 (28%), Gaps = 88/525 (16%)

Query: 99  LSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDL 158
             +      ++   +              NL  L L     A    +        VT   
Sbjct: 45  FKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVT--- 101

Query: 159 SSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSL 218
                         P ++ +  NL +L++++   + +S   ++  +   +    L  L L
Sbjct: 102 --------------PWVTEISNNLRQLKSVHFRRMIVSDLDLD--RLAKARADDLETLKL 145

Query: 219 SSCYL--SGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFF----NLTSLNLSSSGLN 272
             C    +  +   +   + +  + ++++  S    ++L +      +L  LN   +   
Sbjct: 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFA 205

Query: 273 GTFPETILQV----HTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIG 328
              P+ +  +     +L ++ +    +L                          L     
Sbjct: 206 KISPKDLETIARNCRSLVSVKVGDFEILE-------------------------LVGFFK 240

Query: 329 NLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGP--IPSLH-MSKNLTHLDL 385
              NL        N    +P     L     L      ++GP  +P L   +  +  LDL
Sbjct: 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDL 300

Query: 386 SNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPE 445
               L      T  +   NL  ++ RN   +  +         L++L +        + +
Sbjct: 301 LYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMED 360

Query: 446 FSNA-----------SYSALDTLDLSANRL--EG--PIPMSIFELKNLKILMLSSNKLNG 490
                              L+ + +  + +  E    I   +  L + ++++L   +   
Sbjct: 361 EEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT 420

Query: 491 TVQL-----AAIQRLRNLIRLELSYNNLTVNASGD---SSFPSQVRTLRLASCKLK---V 539
            + L     + +   + L R         +   G      +   VR + L         +
Sbjct: 421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480

Query: 540 IPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNG--GLEYLNLSH 582
           +   +    L  L++     S      +         L YL +  
Sbjct: 481 MEFSRGCPNLQKLEMRGCCFSER---AIAAAVTKLPSLRYLWVQG 522

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 55.7 bits (134), Expect = 6e-08
 Identities = 74/544 (13%), Positives = 157/544 (28%), Gaps = 81/544 (14%)

Query: 233 KLQSLSVICLDQNDLSSPVPEFLAD-FFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLS 291
           K+ S +   +      +  P+ L+  F NL SL L        F    L           
Sbjct: 46  KIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFN---LIPENWGGYVTP 102

Query: 292 GNSLLRGSLPDFPKNSSLRTLMLSYANFS--GVLPDSIGNLKNLSRLDLARC-NLSGSIP 348
             + +  +L        L+++       S   +   +     +L  L L +C   +    
Sbjct: 103 WVTEISNNLR------QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGL 156

Query: 349 TSLAK-LTQLVYLDLSSNKFV--GPIPSLHMSKNLTHLDLSNNALPGAISSTD------W 399
            S+     ++  L +  + F          ++++ T L++ N  +      +        
Sbjct: 157 LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA 216

Query: 400 EHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDL 459
            +  +LV V +  +     +     +   L++    +      +PE             L
Sbjct: 217 RNCRSLVSVKV-GDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL 275

Query: 460 SANRLEGPIPMSIFEL-KNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNAS 518
             + +       +F     ++ L L    L        IQ+  NL  LE        N  
Sbjct: 276 GLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR------NVI 329

Query: 519 GDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNG--GLE 576
           GD       +  +    +LK +  ++  +    ++  +  +S      +  +  G   LE
Sbjct: 330 GDRGLEVLAQYCK----QLKRL-RIERGADEQGMEDEEGLVSQRG---LIALAQGCQELE 381

Query: 577 YLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIP 636
           Y+ +  +          I++ +L ++     N           +  LV        + +P
Sbjct: 382 YMAVYVS---------DITNESLESIGTYLKNL---------CDFRLVLLDREERITDLP 423

Query: 637 GDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNN--KLSGKMPTCLIKMSDI 694
            D G                   +   +   K L           L+    + + + S  
Sbjct: 424 LDNG-------------------VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPN 464

Query: 695 LGVLNLRGNSLSGT-LSVTFPGNCGLQTLDLNENQLGGTVPKSLA-NCRKLEVLDLGNNK 752
           +  + L     S   L     G   LQ L++           +       L  L +   +
Sbjct: 465 VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524

Query: 753 IRDT 756
              T
Sbjct: 525 ASMT 528

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 55.3 bits (133), Expect = 7e-08
 Identities = 46/349 (13%), Positives = 96/349 (27%), Gaps = 54/349 (15%)

Query: 64  CCTWCGVDCDEAGRVIGLD----LSEESISGRIDNSSPLLS--LKYLQSLNLAFNMFNAT 117
           C      D     + + L     L    +S    N  P+L      ++ L+L + +    
Sbjct: 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE 308

Query: 118 EIPSGLGNLTNLTHLNLSNA-GFAGQIPIQVSAMTRLVTLDLSSSYSFGG----PLKLEN 172
           +  + +    NL  L   N  G  G   +      +L  L +       G       +  
Sbjct: 309 DHCTLIQKCPNLEVLETRNVIGDRGLEVL-AQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367

Query: 173 PNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSC---------YL 223
             L  L Q   EL  + +   +I+   +E   ++ + +  L    L             L
Sbjct: 368 RGLIALAQGCQELEYMAVYVSDITNESLE---SIGTYLKNLCDFRLVLLDREERITDLPL 424

Query: 224 SGPIHPSLAKLQSLSVICL--DQNDLSSPVPEFLADFF-NLTSLNLSSSGLNGTFPETIL 280
              +   L   + L        Q  L+     ++  +  N+  + L   G +        
Sbjct: 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS 484

Query: 281 QV-HTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLA 339
           +    LQ L++ G               ++                 +  L +L  L + 
Sbjct: 485 RGCPNLQKLEMRGCCFS---------ERAIAAA--------------VTKLPSLRYLWVQ 521

Query: 340 RCNLSGSIPTSLAK---LTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDL 385
               S +    +        +  +       V     +   ++  H+  
Sbjct: 522 GYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILA 570

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 24/148 (16%), Positives = 60/148 (40%), Gaps = 15/148 (10%)

Query: 299 SLPDFPKN--SSLRTLMLSYANFSGVLPDSI-GNLKNLSRLDLARCNLSGSIPTSLAKLT 355
            L   P++       L L+   F+ +    I   L  L +++ +   ++     +    +
Sbjct: 22  KLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS 81

Query: 356 QLVYLDLSSNKFVGPIPSLHMS-----KNLTHLDLSNNALPGAISSTDWEHLSNLVYVDL 410
            +  + L+SN+    + ++        ++L  L L +N +   + +  +  LS++  + L
Sbjct: 82  GVNEILLTSNR----LENVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSL 136

Query: 411 RNNALNGSIPRSLF-SIPMLQQLLLANN 437
            +N +  ++    F ++  L  L L  N
Sbjct: 137 YDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.2 bits (136), Expect = 8e-09
 Identities = 35/145 (24%), Positives = 56/145 (38%), Gaps = 10/145 (6%)

Query: 421 RSLFSIPM-----LQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFE- 474
           + L  IP        +L L NN+F              L  ++ S N++   I    FE 
Sbjct: 21  QKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEG 79

Query: 475 LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLAS 534
              +  ++L+SN+L   VQ    + L +L  L L  N +T   +      S VR L L  
Sbjct: 80  ASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138

Query: 535 CKLKVIPN--LKSQSKLFNLDLSDN 557
            ++  +      +   L  L+L  N
Sbjct: 139 NQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 29/137 (21%), Positives = 58/137 (42%), Gaps = 5/137 (3%)

Query: 477 NLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCK 536
               L L++N+          ++L  L ++  S N +T    G     S V  + L S +
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92

Query: 537 LKVIPN--LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSI 594
           L+ + +   K    L  L L  N+I+  + N  +  G   +  L+L  N ++++    + 
Sbjct: 93  LENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFI-GLSSVRLLSLYDNQITTVAPG-AF 149

Query: 595 SDLNLMTVLDLHSNQLQ 611
             L+ ++ L+L +N   
Sbjct: 150 DTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 40/155 (25%), Positives = 59/155 (38%), Gaps = 6/155 (3%)

Query: 624 VDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRA-KYLLVLDLSNNKLSG 682
           VD SN      IP  I      T    L++N  T +    I +    L  ++ SNNK++ 
Sbjct: 16  VDCSNQKLNK-IPEHIPQY---TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD 71

Query: 683 KMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRK 742
                    S  +  + L  N L       F G   L+TL L  N++      S      
Sbjct: 72  IEEGAFEGASG-VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130

Query: 743 LEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSF 777
           + +L L +N+I    P     + SL  L L +N F
Sbjct: 131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 24/140 (17%), Positives = 51/140 (36%), Gaps = 16/140 (11%)

Query: 260 NLTSLNLSSSGLNGTFPETILQVHT-LQTLDLSGNSLLRGSLPD--FPKNSSLRTLMLSY 316
               L L+++         I +    L+ ++ S N +    + +  F   S +  ++L+ 
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI--TDIEEGAFEGASGVNEILLTS 90

Query: 317 ANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPT-SLAKLTQLVYLDLSSNKFVGPIPSLH 375
                V       L++L  L L    ++  +   S   L+ +  L L  N+    I ++ 
Sbjct: 91  NRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQ----ITTVA 145

Query: 376 MS-----KNLTHLDLSNNAL 390
                   +L+ L+L  N  
Sbjct: 146 PGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 7/128 (5%)

Query: 242 LDQNDLSS-PVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSL 300
           L+ N+ +             L  +N S++ +             +  + L+ N L   ++
Sbjct: 39  LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL--ENV 96

Query: 301 P--DFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPT-SLAKLTQL 357
               F    SL+TLML     + V  DS   L ++  L L    ++ ++   +   L  L
Sbjct: 97  QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSL 155

Query: 358 VYLDLSSN 365
             L+L +N
Sbjct: 156 STLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 1/134 (0%)

Query: 618 PRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSN 677
           P+    +  +NN FT      I   +      + S+N IT +       A  +  + L++
Sbjct: 31  PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90

Query: 678 NKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSL 737
           N+L          +   L  L LR N ++   + +F G   ++ L L +NQ+    P + 
Sbjct: 91  NRLENVQHKMFKGLES-LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149

Query: 738 ANCRKLEVLDLGNN 751
                L  L+L  N
Sbjct: 150 DTLHSLSTLNLLAN 163

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.7 bits (132), Expect = 9e-09
 Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 485 SNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLK 544
             +++  ++      +R L+ L+   +N        + F   +  L L +  L  + NL 
Sbjct: 11  KRRIHLELRNRTPAAVRELV-LDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISVSNLP 68

Query: 545 SQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLD 604
              KL  L+LS+N+I G +     ++ N  L +LNLS N L  +     +  L  +  LD
Sbjct: 69  KLPKLKKLELSENRIFGGLDMLAEKLPN--LTHLNLSGNKLKDISTLEPLKKLECLKSLD 126

Query: 605 LHSNQL 610
           L + ++
Sbjct: 127 LFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 3/104 (2%)

Query: 673 LDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGT 732
           L L N K +      L      L  L+L    L  ++S   P    L+ L+L+EN++ G 
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSENRIFGG 86

Query: 733 VPKSLANCRKLEVLDLGNNKIRDTFPCW-LKNISSLRVLVLRSN 775
           +         L  L+L  NK++D      LK +  L+ L L + 
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 5/108 (4%)

Query: 284 TLQTLDLSGNSLLRGSLPDFPKN-SSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCN 342
            ++ L L       G +        +L  L L       V   ++  L  L +L+L+   
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENR 82

Query: 343 LSGSIPTSLAKLTQLVYLDLSSNKF--VGPIPSLHMSKNLTHLDLSNN 388
           + G +     KL  L +L+LS NK   +  +  L   + L  LDL N 
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 6/118 (5%)

Query: 399 WEHLSNLVYVDLRNNALN-GSIPRSLFSIPMLQQLLLANNKFGGPIPEFSN-ASYSALDT 456
               + +  + L N   N G I         L+ L L N      +   SN      L  
Sbjct: 20  NRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG----LISVSNLPKLPKLKK 75

Query: 457 LDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLT 514
           L+LS NR+ G + M   +L NL  L LS NKL     L  +++L  L  L+L    +T
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.3 bits (110), Expect = 7e-06
 Identities = 32/139 (23%), Positives = 47/139 (33%), Gaps = 15/139 (10%)

Query: 350 SLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVD 409
           + A + +LV LD   +             NL  L L N  L    S ++   L  L  ++
Sbjct: 22  TPAAVRELV-LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---SVSNLPKLPKLKKLE 77

Query: 410 LRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASY----SALDTLDLSAN--- 462
           L  N + G +      +P L  L L+ NK    + + S          L +LDL      
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNK----LKDISTLEPLKKLECLKSLDLFNCEVT 133

Query: 463 RLEGPIPMSIFELKNLKIL 481
            L          L  L  L
Sbjct: 134 NLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 44/196 (22%), Positives = 65/196 (33%), Gaps = 55/196 (28%)

Query: 174 NLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAK 233
           +L    +  A +R L LD    +   IE    L++    L  LSL +  L      S++ 
Sbjct: 15  HLELRNRTPAAVRELVLDNCKSNDGKIE---GLTAEFVNLEFLSLINVGLI-----SVSN 66

Query: 234 LQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGN 293
           L  L                       L  L LS + + G       ++  L  L+LSGN
Sbjct: 67  LPKLP---------------------KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN 105

Query: 294 SLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLAR---CNLSGSIPTS 350
            L             + TL            + +  L+ L  LDL      NL+    + 
Sbjct: 106 KL-----------KDISTL------------EPLKKLECLKSLDLFNCEVTNLNDYRESV 142

Query: 351 LAKLTQLVYLDLSSNK 366
              L QL YLD    +
Sbjct: 143 FKLLPQLTYLDGYDRE 158

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 871 RNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQ---LESLDLSMNHLSDQIP 927
             + DG I        +L  L+            ++ NL +   L+ L+LS N +   + 
Sbjct: 34  CKSNDGKIEGLTAEFVNLEFLSLINVGL-----ISVSNLPKLPKLKKLELSENRIFGGLD 88

Query: 928 IQLANLTFLSVLNLSHNNLE 947
           +    L  L+ LNLS N L+
Sbjct: 89  MLAEKLPNLTHLNLSGNKLK 108

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 54.3 bits (131), Expect = 9e-09
 Identities = 35/139 (25%), Positives = 52/139 (37%), Gaps = 18/139 (12%)

Query: 257 DFFNLTSLNLSSSGLNGTFPETILQVHT-LQTLDLSGNSLLRGSLPDFPKNSSLRTLMLS 315
              ++  L L +S  N    E +      L+ L      L   S+ + PK + L+ L LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLKKLELS 72

Query: 316 YANFSGVLPDSIGNLKNLSRLDLARCNLSG-SIPTSLAKLTQLVYLDLSSN--------- 365
               SG L        NL+ L+L+   +   S    L KL  L  LDL +          
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYR 132

Query: 366 KFVGPIPSLHMSKNLTHLD 384
           + V       +   LT+LD
Sbjct: 133 ENV-----FKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 4/123 (3%)

Query: 486 NKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKS 545
            +++  ++      ++ L+ L+ S +N          F  ++  L   +  L  I NL  
Sbjct: 5   RRIHLELRNRTPSDVKELV-LDNSRSNEGKLEGLTDEFE-ELEFLSTINVGLTSIANLPK 62

Query: 546 QSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDL 605
            +KL  L+LSDN++SG +     +  N  L +LNLS N +  L     +  L  +  LDL
Sbjct: 63  LNKLKKLELSDNRVSGGLEVLAEKCPN--LTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120

Query: 606 HSN 608
            + 
Sbjct: 121 FNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.6 bits (124), Expect = 9e-08
 Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 5/106 (4%)

Query: 671 LVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLG 730
           LVLD S +   GK+     +  + L  L+     L+ +++   P    L+ L+L++N++ 
Sbjct: 22  LVLDNSRSNE-GKLEGLTDEFEE-LEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNRVS 77

Query: 731 GTVPKSLANCRKLEVLDLGNNKIRD-TFPCWLKNISSLRVLVLRSN 775
           G +      C  L  L+L  NKI+D +    LK + +L+ L L + 
Sbjct: 78  GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 5/110 (4%)

Query: 329 NLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNN 388
           ++K L  LD +R N  G +     +  +L +L   +      I +L     L  L+LS+N
Sbjct: 18  DVKELV-LDNSRSNE-GKLEGLTDEFEELEFLSTINVGLTS-IANLPKLNKLKKLELSDN 74

Query: 389 ALPGAISSTDWEHLSNLVYVDLRNNALNG-SIPRSLFSIPMLQQLLLANN 437
            + G       E   NL +++L  N +   S    L  +  L+ L L N 
Sbjct: 75  RVSG-GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 399 WEHLSNLVYVDLRNNALN-GSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASY-SALDT 456
               S++  + L N+  N G +         L+ L   N      +   +N    + L  
Sbjct: 13  NRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG----LTSIANLPKLNKLKK 68

Query: 457 LDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLT 514
           L+LS NR+ G + +   +  NL  L LS NK+     +  +++L NL  L+L    +T
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 8e-07
 Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 7/120 (5%)

Query: 445 EFSNASYSALDTLDLSANRL-EGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNL 503
           E  N + S +  L L  +R  EG +     E + L+ L   +  L     +A + +L  L
Sbjct: 10  ELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL---TSIANLPKLNKL 66

Query: 504 IRLELSYNNLTVNASGDSSFPSQVRTLRLASCK---LKVIPNLKSQSKLFNLDLSDNQIS 560
            +LELS N ++      +     +  L L+  K   L  I  LK    L +LDL + +++
Sbjct: 67  KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 9/85 (10%)

Query: 866 SIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQ---QLESLDLSMNHL 922
            +D SR+N +G +       + L  L+           ++I NL    +L+ L+LS N +
Sbjct: 23  VLDNSRSN-EGKLEGLTDEFEELEFLSTINVGL-----TSIANLPKLNKLKKLELSDNRV 76

Query: 923 SDQIPIQLANLTFLSVLNLSHNNLE 947
           S  + +       L+ LNLS N ++
Sbjct: 77  SGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 15/111 (13%)

Query: 650 SLSSNSIT-GVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDI-----LGVLNLRGN 703
            L ++    G +       + L  L   N  L+         ++++     L  L L  N
Sbjct: 23  VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--------SIANLPKLNKLKKLELSDN 74

Query: 704 SLSGTLSVTFPGNCGLQTLDLNENQLGG-TVPKSLANCRKLEVLDLGNNKI 753
            +SG L V       L  L+L+ N++   +  + L     L+ LDL N ++
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 3/95 (3%)

Query: 851 KGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQ 910
           +G+   L         +              + +L  L  L  S N   G +        
Sbjct: 31  EGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88

Query: 911 QLESLDLSMNHLSDQIPIQ-LANLTFLSVLNLSHN 944
            L  L+LS N + D   I+ L  L  L  L+L + 
Sbjct: 89  NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 5/107 (4%)

Query: 670 LLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQL 729
              LDL   K+   +   L    D    ++   N +   L   FP    L+TL +N N++
Sbjct: 21  DRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRI 76

Query: 730 GGTVPKSLANCRKLEVLDLGNNKIRD-TFPCWLKNISSLRVLVLRSN 775
                        L  L L NN + +      L ++ SL  L +  N
Sbjct: 77  CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 28/146 (19%), Positives = 46/146 (31%), Gaps = 30/146 (20%)

Query: 255 LADFFNLTSLNLSS------SGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSS 308
             +      L+L          L  T  +          +D S N +    L  FP    
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLGATLDQ-------FDAIDFSDNEI--RKLDGFPLLRR 65

Query: 309 LRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSG-SIPTSLAKLTQLVYLDLSSN-- 365
           L+TL+++      +       L +L+ L L   +L        LA L  L YL +  N  
Sbjct: 66  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

Query: 366 -------KFVGPIPSLHMSKNLTHLD 384
                   +V     ++    +  LD
Sbjct: 126 TNKKHYRLYV-----IYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 22/129 (17%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 480 ILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKV 539
           ++ L++  +    Q     R R L   +L    + V  +  ++   Q   +  +  +++ 
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDREL---DLRGYKIPVIENLGATLD-QFDAIDFSDNEIRK 56

Query: 540 IPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNL 599
           +       +L  L +++N+I          + +  L  L L++N L  L     ++ L  
Sbjct: 57  LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPD--LTELILTNNSLVELGDLDPLASLKS 114

Query: 600 MTVLDLHSN 608
           +T L +  N
Sbjct: 115 LTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 30/155 (19%), Positives = 55/155 (35%), Gaps = 30/155 (19%)

Query: 360 LDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSI 419
           + L++   +        +     LDL    +P  I +     L     +D  +N +    
Sbjct: 2   VKLTAEL-IEQAAQYTNAVRDRELDLRGYKIP-VIENLG-ATLDQFDAIDFSDNEI---- 54

Query: 420 PRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLK 479
            R L   P+L++L                       TL ++ NR+          L +L 
Sbjct: 55  -RKLDGFPLLRRL----------------------KTLLVNNNRICRIGEGLDQALPDLT 91

Query: 480 ILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLT 514
            L+L++N L     L  +  L++L  L +  N +T
Sbjct: 92  ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 7/110 (6%)

Query: 454 LDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNL 513
              LDL   ++     +    L     +  S N++    +L     LR L  L ++ N +
Sbjct: 21  DRELDLRGYKIPVIENLGA-TLDQFDAIDFSDNEIR---KLDGFPLLRRLKTLLVNNNRI 76

Query: 514 TVNASGDSSFPSQVRTLRLASCK---LKVIPNLKSQSKLFNLDLSDNQIS 560
                G       +  L L +     L  +  L S   L  L +  N ++
Sbjct: 77  CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 33/186 (17%), Positives = 54/186 (29%), Gaps = 57/186 (30%)

Query: 179 LQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLS 238
             N    R L L G  I    IE    L + + +   +  S   +       L     L 
Sbjct: 15  YTNAVRDRELDLRGYKIPV--IEN---LGATLDQFDAIDFSDNEIR-----KLDGFPLLR 64

Query: 239 VICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRG 298
                                 L +L ++++ +          +  L  L L+ NSL   
Sbjct: 65  ---------------------RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL--- 100

Query: 299 SLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLAR---CNLSGSIPTSLAKLT 355
                     L  L            D + +LK+L+ L + R    N        + K+ 
Sbjct: 101 --------VELGDL------------DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP 140

Query: 356 QLVYLD 361
           Q+  LD
Sbjct: 141 QVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 857 LVKILSIFTSIDFSRNNFDGPIP--EKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLES 914
           L   L  F +IDFS N     I   +    L+ L  L  + N            L  L  
Sbjct: 37  LGATLDQFDAIDFSDNE----IRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92

Query: 915 LDLSMNHLSDQIPIQ-LANLTFLSVLNLSHN 944
           L L+ N L +   +  LA+L  L+ L +  N
Sbjct: 93  LILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 28/229 (12%), Positives = 61/229 (26%), Gaps = 79/229 (34%)

Query: 530 LRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQ 589
           ++L +  ++      +  +   LDL   +I   I N    +     + ++ S N +  L 
Sbjct: 2   VKLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQ--FDAIDFSDNEIRKLD 58

Query: 590 RPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFF 649
                  L  +  L +++N++                        I   +  ++      
Sbjct: 59  ---GFPLLRRLKTLLVNNNRI----------------------CRIGEGLDQAL------ 87

Query: 650 SLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTL 709
                               L  L L+NN L            ++  +  L         
Sbjct: 88  ------------------PDLTELILTNNSL-----------VELGDLDPLASLK----- 113

Query: 710 SVTFPGNCGLQTLDLNEN---QLGGTVPKSLANCRKLEVLDLGNNKIRD 755
                    L  L +  N            +    ++ VLD    K+++
Sbjct: 114 --------SLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 15/110 (13%)

Query: 335 RLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSL------HMSKNLTHLDLSNN 388
            L L     +  +P  L+    L  +DLS+N+    I +L      +M+  L  L LS N
Sbjct: 35  ELYLDGNQFT-LVPKELSNYKHLTLIDLSNNR----ISTLSNQSFSNMT-QLLTLILSYN 88

Query: 389 ALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLF-SIPMLQQLLLANN 437
            L   I    ++ L +L  + L  N ++  +P   F  +  L  L +  N
Sbjct: 89  RL-RCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 9/96 (9%)

Query: 524 PSQVRTLRLASCKLKVIPN-LKSQSKLFNLDLSDNQISGEIPNWVW-EIGNGGLEYLNLS 581
           P  V  L L   +  ++P  L +   L  +DLS+N+IS  + N  +  +    L  L LS
Sbjct: 30  PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQ--LLTLILS 86

Query: 582 HNLLSSLQRPYSISD-LNLMTVLDLHSNQLQGNIPH 616
           +N L  +  P    D L  + +L LH N +   +P 
Sbjct: 87  YNRLRCI--PPRTFDGLKSLRLLSLHGNDIS-VVPE 119

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 6/118 (5%)

Query: 346 SIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNL 405
            +P  + +      L L  N+F      L   K+LT +DLSNN +   +S+  + +++ L
Sbjct: 24  VLPKGIPRDVT--ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQL 80

Query: 406 VYVDLRNNALNGSIPRSLF-SIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSAN 462
           + + L  N L   IP   F  +  L+ L L  N     +PE +    SAL  L + AN
Sbjct: 81  LTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 6/105 (5%)

Query: 409 DLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPI 468
            L  N     +P+ L +   L  + L+NN+    +   S ++ + L TL LS NRL   I
Sbjct: 37  YLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST-LSNQSFSNMTQLLTLILSYNRLRC-I 93

Query: 469 PMSIFE-LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNN 512
           P   F+ LK+L++L L  N ++  V   A   L  L  L +   N
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAI-GAN 136

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 38/135 (28%), Positives = 53/135 (39%), Gaps = 16/135 (11%)

Query: 335 RLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKF----VGPIPSLHMSKNLTHLDLSNN-- 388
            L L    ++   P     L  L  L L SN+     VG   SL     LT LDL  N  
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL---TQLTVLDLGTNQL 100

Query: 389 -ALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFS 447
             LP A+    ++ L +L  + +  N L   +PR +  +  L  L L  N+    IP  +
Sbjct: 101 TVLPSAV----FDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPHGA 154

Query: 448 NASYSALDTLDLSAN 462
               S+L    L  N
Sbjct: 155 FDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 39/149 (26%), Positives = 53/149 (35%), Gaps = 28/149 (18%)

Query: 242 LDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETIL-QVHTLQTLDLSGNSLLRGSL 300
           L  N ++   P       NL  L L S+ L    P  +   +  L  LDL  N L    L
Sbjct: 47  LHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT--VL 103

Query: 301 PDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYL 360
           P                  S V  D    L +L  L +  CN    +P  + +LT L +L
Sbjct: 104 P------------------SAVF-DR---LVHLKELFM-CCNKLTELPRGIERLTHLTHL 140

Query: 361 DLSSNKFVG-PIPSLHMSKNLTHLDLSNN 388
            L  N+    P  +     +LTH  L  N
Sbjct: 141 ALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 5/132 (3%)

Query: 284 TLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNL 343
             Q L L  N + +     F    +L+ L L       +      +L  L+ LDL    L
Sbjct: 41  NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100

Query: 344 SGSIPTSL-AKLTQLVYLDLSSNKFVGPIPS-LHMSKNLTHLDLSNNALPGAISSTDWEH 401
           +  +P+++  +L  L  L +  NK    +P  +    +LTHL L  N L  +I    ++ 
Sbjct: 101 T-VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLK-SIPHGAFDR 157

Query: 402 LSNLVYVDLRNN 413
           LS+L +  L  N
Sbjct: 158 LSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 9/115 (7%)

Query: 505 RLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGE 562
            L L  N +T    G       ++ L L S +L  +P     S ++L  LDL  NQ++  
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-V 102

Query: 563 IPNWVWE-IGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPH 616
           +P+ V++ + +  L+ L +  N L+ L  P  I  L  +T L L  NQL+ +IPH
Sbjct: 103 LPSAVFDRLVH--LKELFMCCNKLTEL--PRGIERLTHLTHLALDQNQLK-SIPH 152

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 9/97 (9%)

Query: 524 PSQVRTLRLASCKLKVIPN---LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNL 580
           P     L L   +L  I +         L  L+L  NQ++  I    +E G   ++ L L
Sbjct: 28  PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFE-GASHIQELQL 85

Query: 581 SHNLLSSLQRPYSISD-LNLMTVLDLHSNQLQGNIPH 616
             N +  +     +   L+ +  L+L+ NQ+   +  
Sbjct: 86  GENKIKEI--SNKMFLGLHQLKTLNLYDNQIS-CVMP 119

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 5/108 (4%)

Query: 381 THLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLF-SIPMLQQLLLANNKF 439
           T L L++N L    S   +  L +LV ++L+ N L   I  + F     +Q+L L  NK 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKI 90

Query: 440 GGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFE-LKNLKILMLSSN 486
              I          L TL+L  N++   +    FE L +L  L L+SN
Sbjct: 91  KE-ISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 8/100 (8%)

Query: 421 RSLFSIPM-----LQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFE- 474
           R L  IP        +LLL +N+ G    +        L  L+L  N+L G I  + FE 
Sbjct: 18  RGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEG 76

Query: 475 LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLT 514
             +++ L L  NK+   +       L  L  L L  N ++
Sbjct: 77  ASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQIS 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 16/124 (12%)

Query: 346 SIPTSLAKLTQLVYLDLSSNKF--VGPIPSLHMSKNLTHLDLSNNAL----PGAISSTDW 399
            IP  +   T    L L+ N+   +          +L  L+L  N L    P A      
Sbjct: 22  EIPRDIPLHTT--ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF----- 74

Query: 400 EHLSNLVYVDLRNNALNGSIPRSLF-SIPMLQQLLLANNKFGGPIPEFSNASYSALDTLD 458
           E  S++  + L  N +   I   +F  +  L+ L L +N+    +   S    ++L +L+
Sbjct: 75  EGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLN 132

Query: 459 LSAN 462
           L++N
Sbjct: 133 LASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 32/106 (30%), Positives = 49/106 (46%)

Query: 672 VLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGG 731
            L L++N+L       L      L  L L+ N L+G     F G   +Q L L EN++  
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92

Query: 732 TVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSF 777
              K      +L+ L+L +N+I    P   ++++SL  L L SN F
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 20/120 (16%), Positives = 41/120 (34%), Gaps = 8/120 (6%)

Query: 275 FPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSY-ANFSGVLPDSIGNLKNL 333
            P   L  + +Q +D + + ++            +  + L           + +  L+NL
Sbjct: 53  LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENL 112

Query: 334 SR----LDLARC-NLSGSIPTSLAKLTQLVYLDLSSNKFVGP--IPSLHMSKNLTHLDLS 386
            +    +++  C N++     +L     L YL LS    V            +L  L+L 
Sbjct: 113 QKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 39/137 (28%), Positives = 56/137 (40%), Gaps = 14/137 (10%)

Query: 284 TLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNL 343
               LDL  NSL       F + +SL  L L       +       L +L+ L+L+   L
Sbjct: 29  QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88

Query: 344 SGSIPTSL-AKLTQLVYLDLSSNKFVGPIPSLHMSK--NLTHLDLSNNALP----GAISS 396
             S+P  +  KLTQL  L L++N+    +P     K   L  L L  N L     G    
Sbjct: 89  Q-SLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146

Query: 397 TDWEHLSNLVYVDLRNN 413
                L++L Y+ L +N
Sbjct: 147 -----LTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 10/116 (8%)

Query: 505 RLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGE 562
            L+L  N+L    +G     + +  L L   KL+ +PN      + L  L+LS NQ+   
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-S 90

Query: 563 IPNWVWE-IGNGGLEYLNLSHNLLSSLQRPYSISD-LNLMTVLDLHSNQLQGNIPH 616
           +PN V++ +    L+ L L+ N L SL  P  + D L  +  L L+ NQL+ ++P 
Sbjct: 91  LPNGVFDKLTQ--LKELALNTNQLQSL--PDGVFDKLTQLKDLRLYQNQLK-SVPD 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1042
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-20
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-12
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-12
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-10
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-09
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	6e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	3e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	4e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 89.4 bits (220), Expect = 8e-20
 Identities = 78/351 (22%), Positives = 117/351 (33%), Gaps = 49/351 (13%)

Query: 30  CQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSTDCC--TWCGVDCDEAG---RVIGLDLS 84
           C    +  LLQ+K  L   ++LS     W  +TDCC  TW GV CD      RV  LDLS
Sbjct: 3   CNPQDKQALLQIKKDLGNPTTLS----SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLS 58

Query: 85  EESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIP 144
             ++       S L +L YL  L +         IP  +  LT L +L +++   +G IP
Sbjct: 59  GLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP 118

Query: 145 IQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQ 204
             +S +  LVTLD S +                                           
Sbjct: 119 DFLSQIKTLVTLDFSYNALS------------------------------------GTLP 142

Query: 205 ALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSL 264
              S +P L  ++     +SG I  S      L        +                + 
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLNLAF 201

Query: 265 NLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLP 324
              S  +       +              + L   L     + +L  L L      G LP
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP 261

Query: 325 DSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFV--GPIPS 373
             +  LK L  L+++  NL G IP     L +      ++NK +   P+P+
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 78.6 bits (192), Expect = 3e-16
 Identities = 59/324 (18%), Positives = 102/324 (31%), Gaps = 52/324 (16%)

Query: 657 TGVIPETICRAKYLLVLDLSNNKLSGKM--PTCLIKMSDILGVLNLRGNSLSGTLSVTFP 714
            GV+ +T  +   +  LDLS   L      P+ L  +  +  +     N+L G +     
Sbjct: 39  LGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA 98

Query: 715 GNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRS 774
               L  L +    + G +P  L+  + L  LD   N +  T P  + ++ +L  +    
Sbjct: 99  KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158

Query: 775 NSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHF 834
           N   G+I   ++  S+  L      S N           +      D             
Sbjct: 159 NRISGAI--PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL 216

Query: 835 ELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFS 894
                   +  +       ++  V +      +D   N   G +P+              
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ-------------- 262

Query: 895 QNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVST 954
                      +  L+ L SL++                        S NNL G IP   
Sbjct: 263 ----------GLTQLKFLHSLNV------------------------SFNNLCGEIPQGG 288

Query: 955 QLQSFSPTSFEGNEGLCGAPLNVC 978
            LQ F  +++  N+ LCG+PL  C
Sbjct: 289 NLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 71.7 bits (174), Expect = 6e-14
 Identities = 68/268 (25%), Positives = 104/268 (38%), Gaps = 8/268 (2%)

Query: 207 SSLVPKLRVLSLSSCYLSG--PIHPSLAKLQSLSVICLDQND-LSSPVPEFLADFFNLTS 263
            +   ++  L LS   L    PI  SLA L  L+ + +   + L  P+P  +A    L  
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 264 LNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVL 323
           L ++ + ++G  P+ + Q+ TL TLD S N+L     P      +L  +       SG +
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 324 PDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHL 383
           PDS G+   L        N              L ++DLS N   G    L  S   T  
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 384 DLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPI 443
                               NL  +DLRNN + G++P+ L  +  L  L ++ N   G I
Sbjct: 226 IHLAKNSLAFDLGKVGLS-KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 444 PEFSNASYSALDTLDLSANRL--EGPIP 469
           P+  N      D    + N+     P+P
Sbjct: 285 PQGGN--LQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.4 bits (155), Expect = 2e-11
 Identities = 52/263 (19%), Positives = 90/263 (34%), Gaps = 8/263 (3%)

Query: 447 SNASYSALDTLDLSANRLEG--PIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLI 504
           ++     ++ LDLS   L    PIP S+  L  L  L +            AI +L  L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 505 RLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVI--PNLKSQSKLFNLDLSDNQISGE 562
            L +++ N++       S    + TL  +   L     P++ S   L  +    N+ISG 
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 563 IPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAV 622
           IP+                + L    + P + ++LNL  V    +            +  
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTG--KIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 623 LVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSG 682
                    + +                L +N I G +P+ + + K+L  L++S N L G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 683 KMPTCLIKMSDILGVLNLRGNSL 705
           ++P           V     N  
Sbjct: 283 EIPQGGNLQR--FDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 62.8 bits (151), Expect = 5e-11
 Identities = 67/305 (21%), Positives = 114/305 (37%), Gaps = 34/305 (11%)

Query: 318 NFSGVLPDSIGNLKNLSRLDLARCNLSG--SIPTSLAKLTQLVYLDLSS--NKFVGPIPS 373
            + GVL D+      ++ LDL+  NL     IP+SLA L  L +L +    N      P+
Sbjct: 37  TWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA 96

Query: 374 LHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLL 433
           +     L +L +++              +  LV +D   NAL+G++P S+ S+P L  + 
Sbjct: 97  IAKLTQLHYLYITHTN-VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155

Query: 434 LANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQ 493
              N+  G IP+   +      ++ +S NRL G IP +   L    + +  +        
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASV 215

Query: 494 LAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLD 553
           L    +    I L  +     +   G S   + +                         D
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGL-------------------------D 250

Query: 554 LSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGN 613
           L +N+I G +P  + ++    L  LN+S N L          +L    V    +N+    
Sbjct: 251 LRNNRIYGTLPQGLTQLKF--LHSLNVSFNNLCG--EIPQGGNLQRFDVSAYANNKCLCG 306

Query: 614 IPHPP 618
            P P 
Sbjct: 307 SPLPA 311

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 88.9 bits (219), Expect = 3e-19
 Identities = 73/410 (17%), Positives = 146/410 (35%), Gaps = 51/410 (12%)

Query: 78  VIGLDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNA 137
            +   L + +++  +  +     L  + +L           I  G+  L NLT +N SN 
Sbjct: 24  KMKTVLGKTNVTDTVSQTD----LDQVTTLQADRL--GIKSI-DGVEYLNNLTQINFSNN 76

Query: 138 GFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISA 197
                 P+    +T+LV + ++++            N                       
Sbjct: 77  QLTDITPL--KNLTKLVDILMNNNQIADITPLANLTN----------------------- 111

Query: 198 PGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLAD 257
                    + +     + +L++         +++ + +LS +   Q          L  
Sbjct: 112 -LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP 170

Query: 258 FFNLTSLNLSSSGLN-GTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSY 316
             NLT+L       N  +    + ++  L++L  + N +    +      ++L  L L+ 
Sbjct: 171 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI--SDITPLGILTNLDELSLNG 228

Query: 317 ANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHM 376
                    ++ +L NL+ LDLA   +S   P  L+ LT+L  L L +N+     P   +
Sbjct: 229 NQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGL 284

Query: 377 SKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLAN 436
           +         N         +   +L NL Y+ L  N ++   P  + S+  LQ+L  AN
Sbjct: 285 TALTNLELNENQ----LEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFAN 338

Query: 437 NKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSN 486
           NK        +N   + ++ L    N++    P++   L  +  L L+  
Sbjct: 339 NKVSDV-SSLAN--LTNINWLSAGHNQISDLTPLA--NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 85.4 bits (210), Expect = 4e-18
 Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 13/179 (7%)

Query: 211 PKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSG 270
             L  LSL+   L      +LA L +L+ + L  N +S+  P  L+    LT L L ++ 
Sbjct: 219 TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 274

Query: 271 LNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNL 330
           ++   P   L   T        N      +       +L  L L + N S + P  + +L
Sbjct: 275 ISNISPLAGLTALTNL----ELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSL 328

Query: 331 KNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNA 389
             L RL  A   +S    +SLA LT + +L    N+     P  +++  +T L L++ A
Sbjct: 329 TKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLT-RITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 85.1 bits (209), Expect = 6e-18
 Identities = 78/445 (17%), Positives = 145/445 (32%), Gaps = 82/445 (18%)

Query: 500 LRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQI 559
           L   ++  L   N+T   +   +   QV TL+     +K I  ++  + L  ++ S+NQ+
Sbjct: 21  LAEKMKTVLGKTNVT--DTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL 78

Query: 560 SGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPR 619
           +   P                                 NL  ++D+  N  Q     P  
Sbjct: 79  TDITPLK-------------------------------NLTKLVDILMNNNQIADITPLA 107

Query: 620 NAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNK 679
           N   +             D   ++       LSSN+I+ +   +   +            
Sbjct: 108 NLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL--------QQL 159

Query: 680 LSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLAN 739
             G   T L  ++++  +  L  +S   +          L++L    NQ+    P     
Sbjct: 160 SFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG--I 217

Query: 740 CRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIA 799
              L+ L L  N+++D     L ++++L  L L +N                 L  + + 
Sbjct: 218 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPL----SGLTKLTELKLG 271

Query: 800 SNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVK 859
           +N      P   +T+   +  +E++ +      + + LT                     
Sbjct: 272 ANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLT--------------------- 310

Query: 860 ILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSM 919
                  +    NN     P  +  L  L  L F+ N       S++ NL  +  L    
Sbjct: 311 ------YLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGH 360

Query: 920 NHLSDQIPIQLANLTFLSVLNLSHN 944
           N +SD  P  LANLT ++ L L+  
Sbjct: 361 NQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.4 bits (197), Expect = 2e-16
 Identities = 78/399 (19%), Positives = 129/399 (32%), Gaps = 37/399 (9%)

Query: 354 LTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNN 413
           L + +   L        +    +   +T L        G  S    E+L+NL  ++  NN
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTDLD-QVTTLQADRL---GIKSIDGVEYLNNLTQINFSNN 76

Query: 414 ALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIF 473
            L    P  L ++  L  +L+ NN+     P  +  + + L   +     ++    ++  
Sbjct: 77  QLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134

Query: 474 ELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLA 533
               L    +S       +         N +       NLT     D S         LA
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194

Query: 534 SCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYS 593
                          L +L  ++NQIS   P  +       L+ L+L+ N L  +    +
Sbjct: 195 KLT-----------NLESLIATNNQISDITPLGILT----NLDELSLNGNQLKDIG---T 236

Query: 594 ISDLNLMTVLDLHSNQLQGNIP-HPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLS 652
           ++ L  +T LDL +NQ+    P         +    N  ++  P         T   +L 
Sbjct: 237 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-----LAGLTALTNLE 291

Query: 653 SNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVT 712
            N         I   K L  L L  N +S   P   +     L  L    N +S   S  
Sbjct: 292 LNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTK---LQRLFFANNKVSDVSS-- 346

Query: 713 FPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNN 751
                 +  L    NQ+    P  LAN  ++  L L + 
Sbjct: 347 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 79.3 bits (194), Expect = 5e-16
 Identities = 66/390 (16%), Positives = 135/390 (34%), Gaps = 29/390 (7%)

Query: 322 VLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLT 381
           +  D+   L    +  L + N++ ++  S   L Q+  L       +  I  +    NLT
Sbjct: 15  IFTDT--ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLG-IKSIDGVEYLNNLT 69

Query: 382 HLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGG 441
            ++ SNN L       +   L +++  + +   +      +  +   L    + +     
Sbjct: 70  QINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129

Query: 442 PIPEFSNASYSALDTLDLSANRLEGPIPMSIF--------ELKNLKILMLSSNKLNGTVQ 493
            +   +    S+    D+SA      +    F         L NL  L       N    
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189

Query: 494 LAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLD 553
           ++ + +L NL  L  + N ++          + +  L L   +LK I  L S + L +LD
Sbjct: 190 ISVLAKLTNLESLIATNNQIS--DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLD 247

Query: 554 LSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGN 613
           L++NQIS   P          L  L L  N +S++     ++ L  +      +     +
Sbjct: 248 LANNQISNLAPLSGLT----KLTELKLGANQISNISPLAGLTALTNLE--LNENQLEDIS 301

Query: 614 IPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVL 673
                +N   +    N+ +   P  + +       F  ++N ++     ++     +  L
Sbjct: 302 PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF-FANNKVSD--VSSLANLTNINWL 356

Query: 674 DLSNNKLSGKMPTCLIKMSDILGVLNLRGN 703
              +N++S   P   +     +  L L   
Sbjct: 357 SAGHNQISDLTPLANLTR---ITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 76.2 bits (186), Expect = 4e-15
 Identities = 63/383 (16%), Positives = 122/383 (31%), Gaps = 42/383 (10%)

Query: 422 SLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKIL 481
            +F+   L + +             S      + TL      ++      +  L NL  +
Sbjct: 14  QIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQI 71

Query: 482 MLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIP 541
             S+N+L     L  + +L +++       ++T  A+  +     +   ++         
Sbjct: 72  NFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 131

Query: 542 NLKSQSKLFNLDL---------SDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPY 592
              ++ +L +  +         +  Q                L  L       + +    
Sbjct: 132 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS 191

Query: 593 SISDLNLMTVLDLHSNQLQGNIPHP-PRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSL 651
            ++ L  +  L   +NQ+    P     N   +  + N       G + +  N T    L
Sbjct: 192 VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTD-LDL 248

Query: 652 SSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIK-------------------MS 692
           ++N I+ + P  +     L  L L  N++S   P   +                      
Sbjct: 249 ANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 306

Query: 693 DILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNK 752
             L  L L  N++S    V+      LQ L    N++      SLAN   +  L  G+N+
Sbjct: 307 KNLTYLTLYFNNISDISPVSSLTK--LQRLFFANNKVSD--VSSLANLTNINWLSAGHNQ 362

Query: 753 IRDTFPCWLKNISSLRVLVLRSN 775
           I D  P  L N++ +  L L   
Sbjct: 363 ISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 74.3 bits (181), Expect = 2e-14
 Identities = 70/388 (18%), Positives = 143/388 (36%), Gaps = 56/388 (14%)

Query: 229 PSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTL 288
            +LA+        L + +++  V +   D   +T+L     G+     + +  ++ L  +
Sbjct: 19  TALAEKMKTV---LGKTNVTDTVSQ--TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQI 71

Query: 289 DLSGNSLLRGSLPDFPKNSSLRTLMLS------------YANFSGVLPDSIGNLKNLSRL 336
           + S N L    +      + L  ++++              N +G+   +          
Sbjct: 72  NFSNNQL--TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129

Query: 337 DLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLH-MSKNLTHLDLSNNALPGAIS 395
           +L   N       +++ ++ L  L        G   +      NLT L+  + +      
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189

Query: 396 STDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALD 455
            +    L+NL  +   NN ++   P  +     L +L L  N+    I   ++ +   L 
Sbjct: 190 ISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD-IGTLASLTN--LT 244

Query: 456 TLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQ----------------- 498
            LDL+ N++    P+S   L  L  L L +N+++    LA +                  
Sbjct: 245 DLDLANNQISNLAPLS--GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP 302

Query: 499 --RLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSD 556
              L+NL  L L +NN++       S  ++++ L  A+ K+  + +L + + +  L    
Sbjct: 303 ISNLKNLTYLTLYFNNIS--DISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGH 360

Query: 557 NQISGEIPNWVWEIGN-GGLEYLNLSHN 583
           NQIS   P     + N   +  L L+  
Sbjct: 361 NQISDLTP-----LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 73.5 bits (179), Expect = 3e-14
 Identities = 67/405 (16%), Positives = 132/405 (32%), Gaps = 63/405 (15%)

Query: 168 LKLENPNLSGLLQ--NLAELRALYLDGVNI-SAPGIEWCQALSSLVPKLRVLSLSSCYLS 224
             L   N++  +   +L ++  L  D + I S  G+E+          L  ++ S+  L+
Sbjct: 27  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYL-------NNLTQINFSNNQLT 79

Query: 225 GPIH-PSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVH 283
                 +L KL  + +      D++            L +  ++                
Sbjct: 80  DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 139

Query: 284 TLQTLD-----------LSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKN 332
           +  T+               +   + +      N +    +   +N        +  L N
Sbjct: 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-ISVLAKLTN 198

Query: 333 LSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPG 392
           L  L      +S   P  +   T L  L L+ N+    I +L    NLT LDL+NN +  
Sbjct: 199 LESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISN 255

Query: 393 AISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYS 452
                    L+ L  + L  N ++   P     +  L  L                ++  
Sbjct: 256 LAP---LSGLTKLTELKLGANQISNISP-----LAGLTALTNLELNENQLEDISPISNLK 307

Query: 453 ALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNN 512
            L  L L  N +    P+S   L  L+ L  ++NK++    ++++  L N+  L   +N 
Sbjct: 308 NLTYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSD---VSSLANLTNINWLSAGHNQ 362

Query: 513 LTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDN 557
           ++                         +  L + +++  L L+D 
Sbjct: 363 IS------------------------DLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.3 bits (176), Expect = 8e-14
 Identities = 66/384 (17%), Positives = 134/384 (34%), Gaps = 56/384 (14%)

Query: 307 SSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNK 366
             + TL         +  D +  L NL++++ +   L+   P  L  LT+LV + +++N+
Sbjct: 44  DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ 99

Query: 367 FVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEH---------LSNLVYVDLRNNALNG 417
                P  +++        +N                       +S++  +    +    
Sbjct: 100 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 159

Query: 418 SIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALD---TLDLSANRLEGPIPMSIFE 474
           S    +  +  L  L                +  + L    +L  + N++    P+ I  
Sbjct: 160 SFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL- 218

Query: 475 LKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLAS 534
             NL  L L+ N+L     +  +  L NL  L+L+ N ++       S  +++  L+L +
Sbjct: 219 -TNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQIS--NLAPLSGLTKLTELKLGA 272

Query: 535 CKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSI 594
            ++  I  L   + L NL+L++NQ    + +         L YL L  N +S +     +
Sbjct: 273 NQISNISPLAGLTALTNLELNENQ----LEDISPISNLKNLTYLTLYFNNISDIS---PV 325

Query: 595 SDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSN 654
           S L  +  L   +N++                            + N  N     S   N
Sbjct: 326 SSLTKLQRLFFANNKVSD-----------------------VSSLANLTNINW-LSAGHN 361

Query: 655 SITGVIPETICRAKYLLVLDLSNN 678
            I+ + P  +     +  L L++ 
Sbjct: 362 QISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.1 bits (139), Expect = 3e-09
 Identities = 46/266 (17%), Positives = 96/266 (36%), Gaps = 24/266 (9%)

Query: 698 LNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTF 757
             L   +++ T+S T      + TL  +   +       +     L  ++  NN++ D  
Sbjct: 27  TVLGKTNVTDTVSQTDLDQ--VTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDIT 82

Query: 758 PCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQ-------- 809
           P  LKN++ L  +++ +N            +   +    +  ++    +           
Sbjct: 83  P--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS 140

Query: 810 ----KCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFT 865
                 I++   + S +  +  N       L      + +   + K  ++ ++  L+   
Sbjct: 141 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLE 200

Query: 866 SIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQ 925
           S+  + N      P  I    +L  L+ + N        T+ +L  L  LDL+ N +S+ 
Sbjct: 201 SLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL 256

Query: 926 IPIQLANLTFLSVLNLSHNNLEGNIP 951
            P  L+ LT L+ L L  N +    P
Sbjct: 257 AP--LSGLTKLTELKLGANQISNISP 280

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.5 bits (122), Expect = 3e-07
 Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 9/126 (7%)

Query: 35  QSLLLQMKSSLVFNSSLSFRMVQWSQSTDCCTWCGVDCDEAGRVIGLDLSEESISGRIDN 94
             L L        +       +   +  +              +  L L   +IS     
Sbjct: 266 TELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD---- 321

Query: 95  SSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLV 154
            SP+ SL  LQ L  A N        S L NLTN+  L+  +   +   P+  + +TR+ 
Sbjct: 322 ISPVSSLTKLQRLFFANNKV---SDVSSLANLTNINWLSAGHNQISDLTPL--ANLTRIT 376

Query: 155 TLDLSS 160
            L L+ 
Sbjct: 377 QLGLND 382

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.4 bits (202), Expect = 2e-17
 Identities = 60/328 (18%), Positives = 107/328 (32%), Gaps = 41/328 (12%)

Query: 285 LQTLDLSGNSLLRGSLP-DFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNL 343
           L+ +  S   L    +P D P +     L L     + +      NLKNL  L L    +
Sbjct: 12  LRVVQCSDLGLE--KVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 344 SGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPG-AISSTDWEHL 402
           S   P + A L +L  L LS N+       +  +     L +  N +     S  +  + 
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL--QELRVHENEITKVRKSVFNGLNQ 125

Query: 403 SNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSAN 462
             +V +       +G    +   +  L  + +A+      I         +L  L L  N
Sbjct: 126 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN----ITTIPQGLPPSLTELHLDGN 181

Query: 463 RLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSS 522
           ++      S+  L NL  L LS N ++      ++    +L  L L+ N L     G + 
Sbjct: 182 KITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLVKVPGGLAD 240

Query: 523 FPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGG----LEYL 578
                                     +  + L +N IS    N     G          +
Sbjct: 241 HKY-----------------------IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 277

Query: 579 NLSHNLLSSLQ-RPYSISDLNLMTVLDL 605
           +L  N +   + +P +   + +   + L
Sbjct: 278 SLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.2 bits (191), Expect = 5e-16
 Identities = 52/304 (17%), Positives = 104/304 (34%), Gaps = 15/304 (4%)

Query: 225 GPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHT 284
           GP+ P   +     V C D   L   VP+ L    +   L+L ++ +          +  
Sbjct: 1   GPVCPFRCQCHLRVVQCSDLG-LEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKN 56

Query: 285 LQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLS 344
           L TL L  N + + S   F     L  L LS      +       L+ L   +     + 
Sbjct: 57  LHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVR 116

Query: 345 GSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSN 404
            S+   L ++  +               +    K L+++ +++  +    ++       +
Sbjct: 117 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI----TTIPQGLPPS 172

Query: 405 LVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRL 464
           L  + L  N +      SL  +  L +L L+ N            +   L  L L+ N+L
Sbjct: 173 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA-NTPHLRELHLNNNKL 231

Query: 465 EGPIPMSIFELKNLKILMLSSNKL-----NGTVQLAAIQRLRNLIRLELSYNNLTVNASG 519
              +P  + + K ++++ L +N +     N         +  +   + L  N +      
Sbjct: 232 V-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 290

Query: 520 DSSF 523
            S+F
Sbjct: 291 PSTF 294

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.2 bits (160), Expect = 4e-12
 Identities = 49/269 (18%), Positives = 85/269 (31%), Gaps = 24/269 (8%)

Query: 104 LQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYS 163
              L+L  N            NL NL  L L N   +   P   + + +L  L LS    
Sbjct: 33  TALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS---- 87

Query: 164 FGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYL 223
                      L  L + + +     L         +            +  L  +    
Sbjct: 88  --------KNQLKELPEKMPKTLQ-ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 138

Query: 224 SGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVH 283
           SG  + +   ++ LS I +   ++++          +LT L+L  + +      ++  ++
Sbjct: 139 SGIENGAFQGMKKLSYIRIADTNITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLN 195

Query: 284 TLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNL 343
            L  L LS NS+             LR L L+      V P  + + K +  + L   N+
Sbjct: 196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNI 254

Query: 344 SG------SIPTSLAKLTQLVYLDLSSNK 366
           S         P    K      + L SN 
Sbjct: 255 SAIGSNDFCPPGYNTKKASYSGVSLFSNP 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.7 bits (156), Expect = 1e-11
 Identities = 44/259 (16%), Positives = 87/259 (33%), Gaps = 12/259 (4%)

Query: 695 LGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIR 754
             +L+L+ N ++      F     L TL L  N++    P + A   KLE L L  N+++
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 755 DTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITS 814
           +      K +  LRV          S+    N      L    + S+       Q     
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 815 WKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNF 874
               ++D     +N   +   L   +    +        +   +K L+    +  S N+ 
Sbjct: 153 SYIRIAD-----TNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 875 DGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSD------QIPI 928
                  +     L  L+ + N     +P  + + + ++ + L  N++S         P 
Sbjct: 208 SAVDNGSLANTPHLRELHLN-NNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 929 QLANLTFLSVLNLSHNNLE 947
                   S ++L  N ++
Sbjct: 267 YNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.0 bits (149), Expect = 9e-11
 Identities = 53/284 (18%), Positives = 97/284 (34%), Gaps = 23/284 (8%)

Query: 408 VDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGP 467
           V   +  L   +P+ L   P    L L NNK    I +    +   L TL L  N++   
Sbjct: 15  VQCSDLGLE-KVPKDLP--PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKI 70

Query: 468 IPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQV 527
            P +   L  L+ L LS N+L    +    +  + L  L +  N +T       +  +Q+
Sbjct: 71  SPGAFAPLVKLERLYLSKNQLKELPE----KMPKTLQELRVHENEITKVRKSVFNGLNQM 126

Query: 528 RTLRLASCKLKVIPN----LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHN 583
             + L +  LK         +   KL  + ++D  I+  IP  +       L  L+L  N
Sbjct: 127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP----SLTELHLDGN 181

Query: 584 LLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSM 643
            ++ +         NL  +    ++    +         L +   N+             
Sbjct: 182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH 241

Query: 644 NFTIFFSLSSNSITGVIPETICRAKY------LLVLDLSNNKLS 681
            +     L +N+I+ +     C   Y         + L +N + 
Sbjct: 242 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.8 bits (133), Expect = 1e-08
 Identities = 45/302 (14%), Positives = 78/302 (25%), Gaps = 19/302 (6%)

Query: 624 VDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGK 683
           V  S+      +P D+      T    L +N IT +        K L  L L NNK+S  
Sbjct: 15  VQCSDLGLEK-VPKDLPPD---TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 684 MPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKL 743
            P     +   L  L L  N L             L+  +    ++  +V   L     +
Sbjct: 71  SPGAFAPLVK-LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129

Query: 744 EVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNF 803
           E L     K         + +  L  + +   +              P L  + +  N  
Sbjct: 130 E-LGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-----TTIPQGLPPSLTELHLDGNKI 183

Query: 804 GGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSI 863
                                   +  D      T    +  +      +    +     
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY 243

Query: 864 FTSIDFSRNNFDG------PIPEKIGRLKSLYGLNFSQN--AFGGPIPSTIGNLQQLESL 915
              +    NN           P    +  S  G++   N   +    PST   +    ++
Sbjct: 244 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 303

Query: 916 DL 917
            L
Sbjct: 304 QL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.4 bits (119), Expect = 5e-07
 Identities = 43/268 (16%), Positives = 65/268 (24%), Gaps = 53/268 (19%)

Query: 719 LQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFY 778
              LDL  N++         N + L  L L NNKI    P     +  L  L L  N   
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL- 91

Query: 779 GSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLT 838
                +E  +  P          N   +V +        M+                   
Sbjct: 92  -----KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI------------------- 127

Query: 839 DIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAF 898
                                       +  +     G        +K L  +  +    
Sbjct: 128 -------------------------VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 162

Query: 899 GGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQS 958
              IP   G    L  L L  N ++      L  L  L+ L LS N++      S     
Sbjct: 163 T-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 219

Query: 959 FSPTSFEGNEGLCGAPLNVCPPNSSKAL 986
                   N  L   P  +      + +
Sbjct: 220 HLRELHLNNNKLVKVPGGLADHKYIQVV 247

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.9 bits (102), Expect = 7e-05
 Identities = 23/126 (18%), Positives = 37/126 (29%), Gaps = 3/126 (2%)

Query: 865 TSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSD 924
             +  S    +  +P+ +        L+   N           NL+ L +L L  N +S 
Sbjct: 13  RVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 925 QIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAPLNVCPPNSSK 984
             P   A L  L  L LS N L+       +              +  +  N        
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129

Query: 985 ALPSAP 990
            L + P
Sbjct: 130 ELGTNP 135

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (172), Expect = 8e-14
 Identities = 50/261 (19%), Positives = 88/261 (33%), Gaps = 6/261 (2%)

Query: 207 SSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNL 266
             +    + + L    +S     S    ++L+++ L  N L+            L  L+L
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 267 SSSGLNGT-FPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPD 325
           S +    +  P T   +  L TL L    L       F   ++L+ L L       +  D
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 326 SIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDL 385
           +  +L NL+ L L    +S     +   L  L  L L  N+     P             
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 386 SNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPE 445
                  A+ +     L  L Y+ L +N               LQ+   ++++    +P+
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFRGSSSEVPCSLPQ 266

Query: 446 FSNASYSALDTLDLSANRLEG 466
                 +  D   L+AN L+G
Sbjct: 267 ----RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (150), Expect = 5e-11
 Identities = 54/251 (21%), Positives = 88/251 (35%), Gaps = 5/251 (1%)

Query: 168 LKLENPNLSGLLQN-LAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGP 226
           + L    +S +        R L +  ++ +        A + L    ++    +  L   
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96

Query: 227 IHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQ 286
              +   L  L  + LD+  L    P        L  L L  + L     +T   +  L 
Sbjct: 97  DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156

Query: 287 TLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGS 346
            L L GN +       F    SL  L+L     + V P +  +L  L  L L   NLS  
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216

Query: 347 IPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLV 406
              +LA L  L YL L+ N +V    +  +   L     S++ +P ++     + L+   
Sbjct: 217 PTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP----QRLAGRD 272

Query: 407 YVDLRNNALNG 417
              L  N L G
Sbjct: 273 LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 7e-10
 Identities = 50/331 (15%), Positives = 92/331 (27%), Gaps = 57/331 (17%)

Query: 618 PRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSN 677
               V          + +P  I  +   +    L  N I+ V   +    + L +L L +
Sbjct: 10  NEPKVTTSCPQQGLQA-VPVGIPAA---SQRIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 678 NKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSL 737
           N L+         ++ +  +       L      TF G   L TL L+   L    P   
Sbjct: 66  NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF 125

Query: 738 ANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVD 797
                L+ L L +N ++       +++ +L  L L  N                 L  + 
Sbjct: 126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP--ERAFRGLHSLDRLL 183

Query: 798 IASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMEL 857
           +  N      P       + M                                       
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMT-------------------------------------- 205

Query: 858 VKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDL 917
                    +    NN      E +  L++L  L  + N +     +       L+    
Sbjct: 206 ---------LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRG 255

Query: 918 SMNHLSDQIPIQLANLTFLSVLNLSHNNLEG 948
           S + +   +P +LA      +  L+ N+L+G
Sbjct: 256 SSSEVPCSLPQRLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 2e-09
 Identities = 59/282 (20%), Positives = 98/282 (34%), Gaps = 17/282 (6%)

Query: 335 RLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIP-SLHMSKNLTHLDLSNNALPGA 393
                +  L  ++P  +   +Q   + L  N+       S    +NLT L L +N L   
Sbjct: 15  TTSCPQQGLQ-AVPVGIPAASQ--RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 394 ISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSA 453
            ++               N  L    P +   +  L  L L +      +        +A
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL-DRCGLQELGPGLFRGLAA 130

Query: 454 LDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNL 513
           L  L L  N L+     +  +L NL  L L  N+++  V   A + L +L RL L  N +
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRV 189

Query: 514 TVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQS--KLFNLDLSDNQISGEIPN-WVWEI 570
                       ++ TL L +  L  +P         L  L L+DN    +     +W  
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW 249

Query: 571 GNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQG 612
               L+    S + +     P  ++  +L     L +N LQG
Sbjct: 250 ----LQKFRGSSSEVPC-SLPQRLAGRDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 4e-09
 Identities = 59/285 (20%), Positives = 102/285 (35%), Gaps = 17/285 (5%)

Query: 403 SNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSAN 462
              V        L  ++P  +      Q++ L  N+    +P  S  +   L  L L +N
Sbjct: 11  EPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISH-VPAASFRACRNLTILWLHSN 66

Query: 463 RLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSS 522
            L      +   L  L+ L LS N    +V  A    L  L  L L    L     G   
Sbjct: 67  VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR 126

Query: 523 FPSQVRTLRLASCKLKVIPN--LKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNL 580
             + ++ L L    L+ +P+   +    L +L L  N+IS         + +  L+ L L
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS--LDRLLL 184

Query: 581 SHNLLSSLQRPYSISDLNLMTVLDLHSNQ---LQGNIPHPPRNAVLVDYSNNSFTSSIPG 637
             N ++ +  P++  DL  +  L L +N    L      P R    +  ++N +      
Sbjct: 185 HQNRVAHVH-PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC-- 241

Query: 638 DIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSG 682
                  +   F  SS+ +   +P+ +       +  L+ N L G
Sbjct: 242 RARPLWAWLQKFRGSSSEVPCSLPQRL---AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 1e-07
 Identities = 37/252 (14%), Positives = 70/252 (27%), Gaps = 6/252 (2%)

Query: 719 LQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFY 778
            Q + L+ N++      S   CR L +L L +N +          ++ L  L L  N+  
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 779 GSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQ-SNFKDVHFELL 837
            S+           L  + +         P               +       D  F  L
Sbjct: 94  RSV-DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 838 TDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNA 897
            ++ +  +             + L     +   +N      P     L  L  L    N 
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 898 FGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVS---T 954
                   +  L+ L+ L L+ N              +L     S + +  ++P      
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGR 271

Query: 955 QLQSFSPTSFEG 966
            L+  +    +G
Sbjct: 272 DLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 1e-07
 Identities = 43/235 (18%), Positives = 72/235 (30%), Gaps = 10/235 (4%)

Query: 572 NGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPH---PPRNAVLVDYSN 628
           N      +     L ++  P  I        + LH N++           RN  ++   +
Sbjct: 10  NEPKVTTSCPQQGLQAV--PVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 629 NSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCL 688
           N                       +  +  V P T      L  L L    L    P   
Sbjct: 66  NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL- 124

Query: 689 IKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDL 748
            +    L  L L+ N+L      TF     L  L L+ N++     ++      L+ L L
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184

Query: 749 GNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNF 803
             N++    P   +++  L  L L +N    S    E       LQ + +  N +
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFAN--NLSALPTEALAPLRALQYLRLNDNPW 237

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 5e-07
 Identities = 45/268 (16%), Positives = 71/268 (26%), Gaps = 8/268 (2%)

Query: 714 PGNC-----GLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLR 768
           PG C        T    +  L   VP  +      + + L  N+I        +   +L 
Sbjct: 3   PGACVCYNEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLT 59

Query: 769 VLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSN 828
           +L L SN             +      +   +                  +  +      
Sbjct: 60  ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE 119

Query: 829 FKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSL 888
                F  L  + Y  +     +    +  + L   T +    N            L SL
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179

Query: 889 YGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEG 948
             L   QN      P    +L +L +L L  N+LS      LA L  L  L L+ N    
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239

Query: 949 NIPVSTQLQSFSPTSFEGNEGLCGAPLN 976
           +                 +E  C  P  
Sbjct: 240 DCRARPLWAWLQKFRGSSSEVPCSLPQR 267

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (160), Expect = 3e-12
 Identities = 49/264 (18%), Positives = 88/264 (33%), Gaps = 18/264 (6%)

Query: 262 TSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSG 321
            +L+L+   L+      +L    +        S +   L +      ++ + LS +    
Sbjct: 3   QTLDLTGKNLHPDVTGRLLS-QGVIAFRCP-RSFMDQPLAEHFSPFRVQHMDLSNSVIEV 60

Query: 322 V-LPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNL 380
             L   +     L  L L    LS  I  +LAK + LV L+LS            +  + 
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 381 THLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFS--------IPMLQQL 432
           + LD  N +     +    +     V   +    L+G       S         P L  L
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 433 LLANNKFGGPIPEFSNASYSALDTLDLS-ANRLEGPIPMSIFELKNLKILMLSSNKLNGT 491
            L+++              + L  L LS    +     + + E+  LK L +      G 
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF-----GI 235

Query: 492 VQLAAIQRL-RNLIRLELSYNNLT 514
           V    +Q L   L  L+++ ++ T
Sbjct: 236 VPDGTLQLLKEALPHLQINCSHFT 259

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 38/276 (13%), Positives = 86/276 (31%), Gaps = 21/276 (7%)

Query: 673 LDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQL-GG 731
           LDL+   L   +   L+     +       + +   L+  F     +Q +DL+ + +   
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG--VIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVS 61

Query: 732 TVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWP 791
           T+   L+ C KL+ L L   ++ D     L   S+L  L L   S +     +    S  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 792 MLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWK 851
            L  ++++          +   +  +    +       K++    L+ +  +    V   
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 852 GREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQ-NAFGGPIPSTIGNLQ 910
             +                         ++  +L  L  L+ S+           +G + 
Sbjct: 182 LSDS----------------VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 225

Query: 911 QLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNL 946
            L++L +        + +    L  L +       +
Sbjct: 226 TLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTI 261

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 7e-09
 Identities = 35/264 (13%), Positives = 80/264 (30%), Gaps = 10/264 (3%)

Query: 335 RLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAI 394
            LDL   NL   +   L     ++      +    P+        + H+DLSN+ +  + 
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 395 SSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQL-------LLANNKFGGPIPEFS 447
                   S L  + L    L+  I  +L     L +L                      
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 448 NASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLE 507
               +     D +   ++  +      +  L +     N     +     +    +    
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 508 LSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWV 567
                L  +   +    + ++ L L+ C   +   L    ++  L      + G +P+  
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ--VFGIVPDGT 240

Query: 568 WEIGNGGLEYLNLSHNLLSSLQRP 591
            ++    L +L ++ +  +++ RP
Sbjct: 241 LQLLKEALPHLQINCSHFTTIARP 264

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 42/268 (15%), Positives = 93/268 (34%), Gaps = 11/268 (4%)

Query: 78  VIGLDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNA 137
           VI        +   +        ++++   +L+ ++   + +   L   + L +L+L   
Sbjct: 25  VIAFRCPRSFMDQPLAEHFSPFRVQHM---DLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81

Query: 138 GFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISA 197
             +  I   ++  + LV L+LS    F    +     L      L EL   +        
Sbjct: 82  RLSDPIVNTLAKNSNLVRLNLSGCSGFS---EFALQTLLSSCSRLDELNLSWCFDFTEKH 138

Query: 198 PGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLAD 257
             +       ++          +   S            + +   D   L +   +    
Sbjct: 139 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 198

Query: 258 FFNLTSLNLSS-SGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSY 316
              L  L+LS    +       + ++ TL+TL + G  +  G+L    +  +L  L ++ 
Sbjct: 199 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKE--ALPHLQINC 255

Query: 317 ANFSGVLPDSIGNLKNLSRLDLARCNLS 344
           ++F+ +   +IGN KN     + +C L+
Sbjct: 256 SHFTTIARPTIGNKKNQEIWGI-KCRLT 282

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 44/276 (15%), Positives = 87/276 (31%), Gaps = 11/276 (3%)

Query: 381 THLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFG 440
             LDL+   L   ++         ++      + ++  +    FS   +Q + L+N+   
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ--GVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIE 59

Query: 441 GPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQ-- 498
                   +  S L  L L   RL  PI  ++ +  NL  L LS         L  +   
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 499 --RLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSD 556
             RL  L                 +     +  L L+  +  +  +  S       +L  
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 557 NQISGEIPN----WVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQG 612
             +S  +      +        L++L+LS       +    + ++  +  L +      G
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 239

Query: 613 NIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIF 648
            +         +  + + FT+     IGN  N  I+
Sbjct: 240 TLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEIW 275

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 1e-04
 Identities = 12/90 (13%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 865 TSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSD 924
            ++D +  N    +  ++     +      ++    P+        +++ +DLS + +  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIA-FRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEV 60

Query: 925 -QIPIQLANLTFLSVLNLSHNNLEGNIPVS 953
             +   L+  + L  L+L    L   I  +
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNT 90

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 4e-04
 Identities = 39/327 (11%), Positives = 92/327 (28%), Gaps = 63/327 (19%)

Query: 624 VDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGK 683
           +D +  +    + G + +     I F    + +   + E     + +  +DLSN+ +   
Sbjct: 5   LDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS 61

Query: 684 MPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKL 743
                                                           T+   L+ C KL
Sbjct: 62  ------------------------------------------------TLHGILSQCSKL 73

Query: 744 EVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNF 803
           + L L   ++ D     L   S+L  L L   S +     +    S   L  ++++    
Sbjct: 74  QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 133

Query: 804 GGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSI 863
                 +   +  +    +       K++    L+ +  +    V     +  ++K    
Sbjct: 134 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF 193

Query: 864 F--------TSIDFSR-NNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLES 914
                      +  SR  +       ++G + +L  L        G +       + L  
Sbjct: 194 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLK---EALPH 250

Query: 915 LDLSMNHLSDQIPIQLANLTFLSVLNL 941
           L ++ +H +      + N     +  +
Sbjct: 251 LQINCSHFTTIARPTIGNKKNQEIWGI 277

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 7e-04
 Identities = 33/255 (12%), Positives = 77/255 (30%), Gaps = 17/255 (6%)

Query: 528 RTLRLASCKL--KVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLL 585
           +TL L    L   V   L SQ  +       + +   +           +++++LS++++
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAE---HFSPFRVQHMDLSNSVI 58

Query: 586 SSLQRPYSISDLNLMTVLDLHSNQLQGNIPHP----PRNAVLVDYSNNSFTSSIPGDIG- 640
                   +S  + +  L L   +L   I +          L     + F+      +  
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 641 -----NSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDIL 695
                + +N +  F  +   +   +         L +     N     + T + +  +++
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178

Query: 696 GVLNLRGNSLSGTLSVTFPGNCGLQTLDLNE-NQLGGTVPKSLANCRKLEVLDLGNNKIR 754
            +       L       F     LQ L L+    +       L     L+ L +      
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPD 238

Query: 755 DTFPCWLKNISSLRV 769
            T     + +  L++
Sbjct: 239 GTLQLLKEALPHLQI 253

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.3 bits (162), Expect = 4e-12
 Identities = 61/472 (12%), Positives = 124/472 (26%), Gaps = 38/472 (8%)

Query: 285 LQTLDLSGNSLLRGSLPD-FPKNSSLRTLMLSYANFSGV----LPDSIGNLKNLSRLDLA 339
           +Q+LD+    L      +  P     + + L     +      +  ++     L+ L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 340 RCNLSGSIPTSLAKL-----TQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAI 394
              L       + +       ++  L L +    G    +  S   T   L        +
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH----L 119

Query: 395 SSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSAL 454
           S          +  +   +         L    +               P+F   + S  
Sbjct: 120 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 179

Query: 455 DTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLT 514
           D  +     L   +  S  +L+ LK+        N       +    +L  L L  N L 
Sbjct: 180 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 239

Query: 515 VNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGG 574
                +        + RL +  +                L   +   E+     E+G+ G
Sbjct: 240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 299

Query: 575 LEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSS 634
              L  +            +   +       H + +           +  +   ++    
Sbjct: 300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 359

Query: 635 IPGDIGNSMNFTIFFSLSSNSITGV----IPETICRAKYLLVLDLSNNKLSGKMPTCLIK 690
           +   +G   +      L+   ++      +  T+     L  LDLSNN L       L++
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 691 MSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRK 742
                    +R               C L+ L L +      +   L    K
Sbjct: 420 S--------VRQP------------GCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.8 bits (145), Expect = 4e-10
 Identities = 48/483 (9%), Positives = 110/483 (22%), Gaps = 50/483 (10%)

Query: 477 NLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCK 536
           +++ L +   +L+       +  L+    + L    LT     D           ++S  
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKD-----------ISSA- 50

Query: 537 LKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEI---GNGGLEYLNLSHNLLSSLQRPYS 593
                 L+    L  L+L  N++     + V +     +  ++ L+L +  L+       
Sbjct: 51  ------LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 104

Query: 594 ISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSS 653
            S L  +  L               +               +  +  +    +     S 
Sbjct: 105 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 164

Query: 654 NSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTF 713
                   E       +    +       K   C ++   +        N       V  
Sbjct: 165 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 224

Query: 714 PGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLR 773
             +     L  N+    G              L                ++  +      
Sbjct: 225 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 284

Query: 774 SNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVH 833
                 +     ++ +  + + +            + C  +             N   + 
Sbjct: 285 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 344

Query: 834 FELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNF 893
            ++  +      V    +G       +      +  +  +                    
Sbjct: 345 LQISNNRLEDAGVRELCQGLGQPGSVL----RVLWLADCDVSDSSCS------------- 387

Query: 894 SQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLA-----NLTFLSVLNLSHNNLEG 948
                   + +T+     L  LDLS N L D   +QL          L  L L       
Sbjct: 388 -------SLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 440

Query: 949 NIP 951
            + 
Sbjct: 441 EME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (131), Expect = 3e-08
 Identities = 48/440 (10%), Positives = 93/440 (21%), Gaps = 16/440 (3%)

Query: 357 LVYLDLSSNKF--VGPIPSLHMSKNLTHLDLSNNAL----PGAISSTDWEHLSNLVYVDL 410
           +  LD+   +         L + +    + L +  L       ISS        L  ++L
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELNL 62

Query: 411 RNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPM 470
           R+N L       +          +            +     +     L   +       
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 471 SIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTL 530
            + +     +     +      +L       +    E   + L           S     
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 531 RLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQR 590
                 L                 S    S    +    + +          +       
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 591 PYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFS 650
              +    L     L +  +            L        +       GN +       
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 651 LSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLS 710
           L    +           K         +  S  +      +   +    L    +     
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 711 VTFPGNCGLQTLDLNENQLGGTVPKSLA----NCRKLEVLDLGNNKIRDTFPCWL----- 761
                   L+ L L +  +  +   SLA        L  LDL NN + D     L     
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 762 KNISSLRVLVLRSNSFYGSI 781
           +    L  LVL    +   +
Sbjct: 423 QPGCLLEQLVLYDIYWSEEM 442

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 2e-06
 Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 13/100 (13%)

Query: 684 MPTCLIKMSDILGVLNLRGNSLSGT----LSVTFPGNCGLQTLDLNENQLGGTVPKSLA- 738
           +   L +   +L VL L    +S +    L+ T   N  L+ LDL+ N LG      L  
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 739 ----NCRKLEVLDLGNNKIRDTFPCWL----KNISSLRVL 770
                   LE L L +    +     L    K+  SLRV+
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 4e-05
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 8/92 (8%)

Query: 377 SKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNG----SIPRSLFSIPMLQQL 432
           S ++  LD+    L  A  +     L     V L +  L       I  +L   P L +L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 433 LLANNKFGG----PIPEFSNASYSALDTLDLS 460
            L +N+ G      + +        +  L L 
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 2e-04
 Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 9/88 (10%)

Query: 81  LDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFN---ATEIPSGLGNLTNLTHLNLSNA 137
           LD+  E +S     +  L  L+  Q + L           +I S L     L  LNL + 
Sbjct: 7   LDIQCEELSD-ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 65

Query: 138 GFAGQIPIQVSAM-----TRLVTLDLSS 160
                    V         ++  L L +
Sbjct: 66  ELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 2e-04
 Identities = 20/120 (16%), Positives = 35/120 (29%), Gaps = 29/120 (24%)

Query: 104 LQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYS 163
           +QSL++     +       L  L     + L + G                         
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCK------------------ 45

Query: 164 FGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEW-CQALSSLVPKLRVLSLSSCY 222
                     ++S  L+    L  L L    +   G+    Q L +   K++ LSL +C 
Sbjct: 46  ----------DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 3e-04
 Identities = 24/117 (20%), Positives = 37/117 (31%), Gaps = 30/117 (25%)

Query: 104 LQSLNLAFNMFN---ATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSS 160
           L+ L LA    +    + + + L    +L  L+LSN        +Q+             
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV------------ 418

Query: 161 SYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLS 217
                            + Q    L  L L  +  S    +  QAL    P LRV+S
Sbjct: 419 ---------------ESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 6e-04
 Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 9/98 (9%)

Query: 153 LVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEW-CQALSSLVP 211
           + +LD+          +L +   + LL  L + + + LD   ++    +    AL    P
Sbjct: 4   IQSLDIQCE-------ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN-P 55

Query: 212 KLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSS 249
            L  L+L S  L       + +        + +  L +
Sbjct: 56  ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 0.001
 Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 14/97 (14%)

Query: 303 FPKNSSLRTLMLSYANFSGV----LPDSIGNLKNLSRLDLARCNLSGSIPTSLAK----- 353
               S LR L L+  + S      L  ++    +L  LDL+   L  +    L +     
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 354 LTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNAL 390
              L  L L    +   +        L  L+    +L
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDR-----LQALEKDKPSL 456

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.002
 Identities = 18/97 (18%), Positives = 27/97 (27%), Gaps = 9/97 (9%)

Query: 269 SGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFP----KNSSLRTLMLSYANFSGVLP 324
           +G+             L+ L L+   +   S          N SLR L LS         
Sbjct: 355 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 414

Query: 325 DSIG-----NLKNLSRLDLARCNLSGSIPTSLAKLTQ 356
             +          L +L L     S  +   L  L +
Sbjct: 415 LQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.003
 Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 9/92 (9%)

Query: 200 IEWCQALSSLVPKLRVLSLSSCYLSG----PIHPSLAKLQSLSVICLDQNDLSSPVPEFL 255
            E CQ L      LRVL L+ C +S      +  +L    SL  + L  N L       L
Sbjct: 358 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 417

Query: 256 ADFF-----NLTSLNLSSSGLNGTFPETILQV 282
            +        L  L L     +    + +  +
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.004
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 10/91 (10%)

Query: 213 LRVLSLSSCYLSGPIHPSLAK-LQSLSVICLDQNDLSSPVPEFLADFF----NLTSLNLS 267
           ++ L +    LS      L   LQ   V+ LD   L+    + ++        L  LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 268 SSGLNGTFPETILQV-----HTLQTLDLSGN 293
           S+ L       +LQ        +Q L L   
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (139), Expect = 8e-10
 Identities = 27/232 (11%), Positives = 54/232 (23%), Gaps = 6/232 (2%)

Query: 716 NCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSN 775
           +C  +     E+++   +P  L   R    L     K+R            L  + +  N
Sbjct: 7   HCSNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 63

Query: 776 SFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCI---TSWKAMMSDEDEAQSNFKDV 832
                I      +   + +I    +NN     P+           ++S+           
Sbjct: 64  DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 123

Query: 833 HFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLN 892
              L   +                 V +      +  ++N             +      
Sbjct: 124 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNL 183

Query: 893 FSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHN 944
              N                  LD+S   +       L NL  L   +  + 
Sbjct: 184 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 3e-06
 Identities = 25/207 (12%), Positives = 53/207 (25%), Gaps = 6/207 (2%)

Query: 575 LEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSS 634
              L      L  +Q   + S    +  +++  N +   I     + +   +      ++
Sbjct: 31  AIELRFVLTKLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 89

Query: 635 IPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLL-----VLDLSNNKLSGKMPTCLI 689
               I       +            I       K        +    N  +        +
Sbjct: 90  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 149

Query: 690 KMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLG 749
            +S    +L L  N +    +  F G    +    + N L               +LD+ 
Sbjct: 150 GLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 209

Query: 750 NNKIRDTFPCWLKNISSLRVLVLRSNS 776
             +I       L+N+  LR     +  
Sbjct: 210 RTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 32/227 (14%), Positives = 67/227 (29%), Gaps = 3/227 (1%)

Query: 528 RTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSS 587
           R       K+  IP+   ++    L     ++           G+     ++ +  L   
Sbjct: 11  RVFLCQESKVTEIPSDLPRN-AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 69

Query: 588 LQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDY--SNNSFTSSIPGDIGNSMNF 645
               +S         ++  +N L  N         L     SN            +S+  
Sbjct: 70  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 129

Query: 646 TIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSL 705
            +     + +I  +   +     +  V+   N     ++  C    + +  +     N+L
Sbjct: 130 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL 189

Query: 706 SGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNK 752
               +  F G  G   LD++  ++       L N +KL      N K
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 3/66 (4%)

Query: 309 LRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFV 368
               +    N   +  D          LD++R  +       L  L +L      + K  
Sbjct: 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK-- 236

Query: 369 GPIPSL 374
             +P+L
Sbjct: 237 -KLPTL 241

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.6 bits (135), Expect = 2e-09
 Identities = 33/222 (14%), Positives = 64/222 (28%), Gaps = 19/222 (8%)

Query: 722 LDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSI 781
           +   ++ +  TV  + A+   +  L      +       ++ +++L  L L+ N      
Sbjct: 24  IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA 79

Query: 782 TCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIF 841
             +       +    +   N       Q   T         D            L  D+ 
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 842 YQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGP 901
               ++       +              S  N        +  L  L  L    N     
Sbjct: 140 QITNISPLAGLTNL-----------QYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI 188

Query: 902 IPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSH 943
            P  + +L  L  + L  N +SD  P  LAN + L ++ L++
Sbjct: 189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 42/235 (17%), Positives = 82/235 (34%), Gaps = 20/235 (8%)

Query: 322 VLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLT 381
           + PD    L N  ++   + N++ ++  + A L  +  L          I  +    NL 
Sbjct: 12  IFPDP--ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IEGVQYLNNLI 66

Query: 382 HLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGG 441
            L+L +N +       D   L NL  +     + N     S  +     + L   +    
Sbjct: 67  GLELKDNQIT------DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT 120

Query: 442 PIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLR 501
            +   +  S             L+     +I  L  L  L   S        L  +  L 
Sbjct: 121 DVTPLAGLSNL-------QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLS 173

Query: 502 NLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSD 556
            L  L+   N ++ + S  +S P+ +  + L + ++  +  L + S LF + L++
Sbjct: 174 KLTTLKADDNKIS-DISPLASLPN-LIEVHLKNNQISDVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 5e-05
 Identities = 31/222 (13%), Positives = 68/222 (30%), Gaps = 21/222 (9%)

Query: 168 LKLENPNLSGL--LQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSG 225
           +     N++      +L  +  L   G  ++   IE  Q L      L  L L    ++ 
Sbjct: 24  IAAGKSNVTDTVTQADLDGITTLSAFGTGVT--TIEGVQYL----NNLIGLELKDNQITD 77

Query: 226 PIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTL 285
                     +   +  +     S +    +      +    +          +  ++  
Sbjct: 78  LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD 137

Query: 286 QTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSG 345
                + + L   +   +    + +   L+           + NL  L+ L      +S 
Sbjct: 138 LNQITNISPLAGLTNLQYLSIGNAQVSDLTP----------LANLSKLTTLKADDNKISD 187

Query: 346 SIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSN 387
             P  LA L  L+ + L +N+    +  L  + NL  + L+N
Sbjct: 188 ISP--LASLPNLIEVHLKNNQISD-VSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 5e-05
 Identities = 36/232 (15%), Positives = 77/232 (33%), Gaps = 22/232 (9%)

Query: 352 AKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLR 411
             L   + +    +     +    +   +T L      +    +    ++L+NL+ ++L+
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQADLD-GITTLSAFGTGV---TTIEGVQYLNNLIGLELK 71

Query: 412 NNAL-NGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPM 470
           +N + + +  ++L  I  L+                S  +     T       L G   +
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 471 SIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTL 530
            +  L   +I  +S       +Q  +I   +      L+  +             ++ TL
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLS-------------KLTTL 178

Query: 531 RLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSH 582
           +    K+  I  L S   L  + L +NQIS   P          L  + L++
Sbjct: 179 KADDNKISDISPLASLPNLIEVHLKNNQISDVSPLA----NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 2e-04
 Identities = 30/216 (13%), Positives = 58/216 (26%), Gaps = 17/216 (7%)

Query: 738 ANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVD 797
                   +  G + + DT      ++  +  L          +T  E       L  ++
Sbjct: 16  PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTG----VTTIEGVQYLNNLIGLE 69

Query: 798 IASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMEL 857
           +  N      P K +T    +                + ++ I     +           
Sbjct: 70  LKDNQITDLAPLKNLTKITELE---------LSGNPLKNVSAIAGLQSIKTLDLTSTQIT 120

Query: 858 VKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDL 917
                   S           I               S         + + NL +L +L  
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA 180

Query: 918 SMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVS 953
             N +SD  P  LA+L  L  ++L +N +    P++
Sbjct: 181 DDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA 214

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 31/199 (15%), Positives = 62/199 (31%), Gaps = 17/199 (8%)

Query: 500 LRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQI 559
           L N I++    +N+T   +   +    + TL      +  I  ++  + L  L+L DNQI
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI 75

Query: 560 SGEIPN--------WVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQ 611
           +   P                            + +L    +            +   L 
Sbjct: 76  TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135

Query: 612 GNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSL-----SSNSITGVIPETICR 666
            ++      + L   +N  + S     + +         L       N I+ + P  +  
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LAS 193

Query: 667 AKYLLVLDLSNNKLSGKMP 685
              L+ + L NN++S   P
Sbjct: 194 LPNLIEVHLKNNQISDVSP 212

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 36/216 (16%), Positives = 71/216 (32%), Gaps = 13/216 (6%)

Query: 78  VIGLDLSEESISGRIDNSSPLLSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNA 137
            I +   + +++  +        L  + +L+        T I  G+  L NL  L L + 
Sbjct: 21  AIKIAAGKSNVTDTV----TQADLDGITTLSAFGT--GVTTI-EGVQYLNNLIGLELKDN 73

Query: 138 GFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQN--LAELRALYLDGVNI 195
                 P++       + L  +   +      L++     L             L  + +
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 196 SAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFL 255
               +     +S L     +  LS           LA L  L+ +  D N +S   P  L
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--L 191

Query: 256 ADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLS 291
           A   NL  ++L ++ ++   P  +     L  + L+
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 4/84 (4%)

Query: 53  FRMVQWSQSTDCCTWCGVDCDEAGRVIGLDLSEESISGRIDNSSPLLSLKYLQSLNLAFN 112
              +   Q          D      +  L   +     +I + SPL SL  L  ++L  N
Sbjct: 147 LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD-DNKISDISPLASLPNLIEVHLKNN 205

Query: 113 MFNATEIPSGLGNLTNLTHLNLSN 136
               +++   L N +NL  + L+N
Sbjct: 206 QI--SDVSP-LANTSNLFIVTLTN 226

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 8e-09
 Identities = 47/213 (22%), Positives = 67/213 (31%), Gaps = 10/213 (4%)

Query: 278 TILQVHTLQTLDLSGNSLLRGSLP-DFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRL 336
            + +V +   ++    +L   +LP D PK+     L LS          ++     L++L
Sbjct: 5   EVSKVASHLEVNCDKRNLT--ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 337 DLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISS 396
           +L R  L+         L  L  LDLS N+             LT LD+S N L      
Sbjct: 61  NLDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 397 TDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDT 456
                          N            +  + +  L  NN    P    +      LDT
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN--LDT 176

Query: 457 LDLSANRLEGPIPMSIFELKNLKILMLSSNKLN 489
           L L  N L   IP   F    L    L  N   
Sbjct: 177 LLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 33/236 (13%), Positives = 64/236 (27%), Gaps = 32/236 (13%)

Query: 685 PTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLE 744
           P C +        +N    +L+  L    P +     L L+EN L      +L    +L 
Sbjct: 2   PICEVSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLT 58

Query: 745 VLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFG 804
            L+L   ++                                   + P+L  +D++ N   
Sbjct: 59  QLNLDRAELTKLQVDG----------------------------TLPVLGTLDLSHNQLQ 90

Query: 805 GRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIF 864
                        ++       ++        L ++    +     K     L+      
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 865 TSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMN 920
             +  + NN        +  L++L  L   +N+    IP        L    L  N
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSL-YTIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 9e-07
 Identities = 37/186 (19%), Positives = 49/186 (26%), Gaps = 7/186 (3%)

Query: 207 SSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNL 266
             L     +L LS   L      +L     L+ +     +L       L     L  L  
Sbjct: 27  PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQL-----NLDRAELTKLQVDGTLPVLGT 81

Query: 267 SSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLP--DFPKNSSLRTLMLSYANFSGVLP 324
                N      +L         L  +     SLP         L+ L L       + P
Sbjct: 82  LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141

Query: 325 DSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLD 384
             +     L +L LA  NL+      L  L  L  L L  N           S  L    
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF 201

Query: 385 LSNNAL 390
           L  N  
Sbjct: 202 LHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 1e-05
 Identities = 41/189 (21%), Positives = 60/189 (31%), Gaps = 12/189 (6%)

Query: 117 TEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLS 176
           T +P  L    + T L+LS           +   TRL  L+L  +      +    P L 
Sbjct: 23  TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLG 80

Query: 177 GLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCY--------LSGPIH 228
            L  +  +L++L L G  + A  +            L  L                  + 
Sbjct: 81  TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140

Query: 229 PSLAKLQSLSVI-CLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQT 287
           P L           L  N+L+      L    NL +L L  + L  T P+     H L  
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF 199

Query: 288 LDLSGNSLL 296
             L GN  L
Sbjct: 200 AFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 44/200 (22%), Positives = 69/200 (34%), Gaps = 27/200 (13%)

Query: 624 VDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGK 683
           V+    + T+ +P D+      T    LS N +      T+     L  L+L   +L+  
Sbjct: 15  VNCDKRNLTA-LPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70

Query: 684 MPTCLIK--------------------MSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLD 723
                +                         L VL++  N L+        G   LQ L 
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130

Query: 724 LNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITC 783
           L  N+L    P  L    KLE L L NN + +     L  + +L  L+L+ NS Y   T 
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY---TI 187

Query: 784 RENDDSWPMLQIVDIASNNF 803
            +      +L    +  N +
Sbjct: 188 PKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 7e-05
 Identities = 34/213 (15%), Positives = 66/213 (30%), Gaps = 12/213 (5%)

Query: 400 EHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDL 459
             +++ + V+     L  ++P  L        L L+ N         +   Y+ L  L+L
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYT-FSLATLMPYTRLTQLNL 62

Query: 460 SANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASG 519
              R E         L  L  L LS N+   ++ L         +         ++    
Sbjct: 63  D--RAELTKLQVDGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 520 DSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDL-SDNQISGEIPNWVWEIGNGGLEYL 578
                         +    + P L + +        ++N ++      +  + N  L+ L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN--LDTL 177

Query: 579 NLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQ 611
            L  N L ++  P      +L+    LH N   
Sbjct: 178 LLQENSLYTI--PKGFFGSHLLPFAFLHGNPWL 208

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.4 bits (121), Expect = 3e-07
 Identities = 55/336 (16%), Positives = 100/336 (29%), Gaps = 30/336 (8%)

Query: 285 LQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLS 344
              L+L+   L   SLP+ P +  L +L+ S  + +  LP+   +LK+L         + 
Sbjct: 40  AHELELNNLGL--SSLPELPPH--LESLVASCNSLT-ELPELPQSLKSL--------LVD 86

Query: 345 GSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSN 404
            +   +L+ L  L+     SN  +  +P L  S  L  +D+ NN+L              
Sbjct: 87  NNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIA 146

Query: 405 LVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRL 464
                L       ++P           L    +         +  +         +   L
Sbjct: 147 AGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFL 206

Query: 465 EGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFP 524
                 +        +             L  +  L   +       N+    S      
Sbjct: 207 TTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNL 266

Query: 525 SQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNL 584
             +                     L  L++S+N++  E+P          LE L  S N 
Sbjct: 267 YYLNASSNEIR-----SLCDLPPSLEELNVSNNKLI-ELPALP-----PRLERLIASFNH 315

Query: 585 LSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRN 620
           L+ +  P    +L     L +  N L+   P  P +
Sbjct: 316 LAEV--PELPQNL---KQLHVEYNPLRE-FPDIPES 345

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 1e-05
 Identities = 54/317 (17%), Positives = 90/317 (28%), Gaps = 46/317 (14%)

Query: 665 CRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLS------GTLSVTFPGNCG 718
           C  +    L+L+N  LS  +P         L  L    NSL+       +L      N  
Sbjct: 35  CLDRQAHELELNNLGLS-SLPELPPH----LESLVASCNSLTELPELPQSLKSLLVDNNN 89

Query: 719 LQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFY 778
           L+ L      L      +    +  E+ +    KI D     LK +  L   +    +  
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 779 GSITCRENDDSWPMLQIVDIASNNFGGRVP---------------------------QKC 811
             +       + P L  +   +N+                                    
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 812 ITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSR 871
                 + +  D   S       +       +   ++T+      +   LS      +  
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 872 NNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLA 931
           N     I        SL  LN S N     +P+    L   E L  S NHL+ ++P    
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRL---ERLIASFNHLA-EVPELPQ 324

Query: 932 NLTFLSVLNLSHNNLEG 948
           NL     L++ +N L  
Sbjct: 325 NLK---QLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 1e-05
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 241 CLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSL 300
               N  S+ +        +L  LN+S++ L    P    +   L+ L  S N L    +
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHL--AEV 319

Query: 301 PDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNL 333
           P+ P+N  L+ L + Y       PD   ++++L
Sbjct: 320 PELPQN--LKQLHVEYNPLRE-FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 1e-05
 Identities = 50/326 (15%), Positives = 91/326 (27%), Gaps = 24/326 (7%)

Query: 454 LDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELS---- 509
              L+L+   L   +P       +L+ L+ S N L    +L    +   +    L     
Sbjct: 40  AHELELNNLGLSS-LPELP---PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD 95

Query: 510 -YNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVW 568
               L      ++           +  K+  + N   +         +   +G       
Sbjct: 96  LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEEL 155

Query: 569 EIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHP----PRNAVLV 624
                      +  +  S  + P     L  +   +    +L      P          +
Sbjct: 156 PELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL 215

Query: 625 DYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKM 684
             +      S+          T    L  +     + E I      L  +L     S   
Sbjct: 216 LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE 275

Query: 685 PTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCG-LQTLDLNENQLGGTVPKSLANCRKL 743
              L  +   L  LN+  N L        P     L+ L  + N L   VP+   N   L
Sbjct: 276 IRSLCDLPPSLEELNVSNNKLI-----ELPALPPRLERLIASFNHL-AEVPELPQN---L 326

Query: 744 EVLDLGNNKIRDTFPCWLKNISSLRV 769
           + L +  N +R  FP   +++  LR+
Sbjct: 327 KQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.2 bits (105), Expect = 3e-05
 Identities = 58/323 (17%), Positives = 93/323 (28%), Gaps = 24/323 (7%)

Query: 331 KNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNAL 390
           +    L+L    LS S+P     L     L  S N            K+L   + +  AL
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHLE---SLVASCNSLTELPELPQSLKSLLVDNNNLKAL 93

Query: 391 PGAISSTDWEHLSNLVYVDL----------RNNALNGSIPRSLFSIPMLQQLLLANNKFG 440
                  ++  +SN     L            +  N S+ +     P L+ +   NN+  
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 441 GPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRL 500
                 +    +A+   + S  +L          +    IL       N           
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 501 RNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQIS 560
             L  L     +L      D+         +  +            S+L       N  S
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273

Query: 561 GEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRN 620
            EI +      +  LE LN+S+N L  L  P     L     L    N L   +P  P+N
Sbjct: 274 NEIRSLCDLPPS--LEELNVSNNKLIEL--PALPPRL---ERLIASFNHLA-EVPELPQN 325

Query: 621 AVLVDYSNNSFTS--SIPGDIGN 641
              +    N       IP  + +
Sbjct: 326 LKQLHVEYNPLREFPDIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 5e-05
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 9/90 (10%)

Query: 341 CNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWE 400
              S  I +       L  L++S+NK +  +P+L     L  L  S N L     +   E
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL--PPRLERLIASFNHL-----AEVPE 321

Query: 401 HLSNLVYVDLRNNALNGSIPRSLFSIPMLQ 430
              NL  + +  N L    P    S+  L+
Sbjct: 322 LPQNLKQLHVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 5e-05
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 9/93 (9%)

Query: 265 NLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLP 324
               +  +           +L+ L++S N L+   LP  P    L  L+ S+ + +  +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI--ELPALPPR--LERLIASFNHLAE-VP 320

Query: 325 DSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQL 357
           +   NLK   +L +    L    P     +  L
Sbjct: 321 ELPQNLK---QLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 0.001
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 11/97 (11%)

Query: 459 LSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNAS 518
              N     I        +L+ L +S+NKL     L        L RL  S+N+L     
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL-----PPRLERLIASFNHLA---- 317

Query: 519 GDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLS 555
                P  ++ L +    L+  P++     + +L ++
Sbjct: 318 EVPELPQNLKQLHVEYNPLREFPDIP--ESVEDLRMN 352

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 51.0 bits (120), Expect = 3e-07
 Identities = 42/313 (13%), Positives = 92/313 (29%), Gaps = 17/313 (5%)

Query: 454 LDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLN--GTVQLA-AIQRLRNLIRLELSY 510
           L    ++    +  +   + E  ++K ++LS N +       L+  I   ++L   E S 
Sbjct: 10  LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 511 NNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEI 570
                           +    L   KL  +    +       +   + +S   P     +
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 571 GNGGLEYLNLSHNLLSSLQRPYSISDLN--LMTVLDLHSNQLQGNIPHPPRNAVLVDYSN 628
            N GL     +    +  +   +    N   +  +    N+L+                 
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188

Query: 629 NSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCL 688
           ++      G     +   +   L+      V+        +     L ++ L+  + +  
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH-----LGSSALAIALKSWP 243

Query: 689 IKMSDILGVLNLRGNSLSGTLS-VTFPGNCGLQTLDLNENQLGGTVPKSLA-----NCRK 742
                 L    L     +  +   +   N GLQTL L  N++     ++L          
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303

Query: 743 LEVLDLGNNKIRD 755
           L  L+L  N+  +
Sbjct: 304 LLFLELNGNRFSE 316

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.4 bits (108), Expect = 1e-05
 Identities = 31/327 (9%), Positives = 71/327 (21%), Gaps = 27/327 (8%)

Query: 650 SLSSNSITGV----IPETICRAKYLLVLDLSNNKLSGKMPTCL---IKMSDILGVLNLRG 702
           SL  ++IT      +   +     +  + LS N +  +    L   I     L +     
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 703 NSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLK 762
                           L    L   +L        A     +   +              
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 763 NISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDE 822
           + + L        +                     I   N       K            
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188

Query: 823 DEAQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKI 882
              +     +  E +  +  + +              +  +    +   +     +   +
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQE---------LKVLDLQDNTFTHLGSSALAIAL 239

Query: 883 GRLKSLYGLNFSQNAFGGPIPSTIGN------LQQLESLDLSMNHLSDQIPIQLA----- 931
               +L  L  +         + + +         L++L L  N +       L      
Sbjct: 240 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 299

Query: 932 NLTFLSVLNLSHNNLEGNIPVSTQLQS 958
            +  L  L L+ N       V  +++ 
Sbjct: 300 KMPDLLFLELNGNRFSEEDDVVDEIRE 326

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.3 bits (100), Expect = 1e-04
 Identities = 45/331 (13%), Positives = 93/331 (28%), Gaps = 47/331 (14%)

Query: 473 FELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRL 532
            E K+LK+  +++         A +    ++  + LS N +   A               
Sbjct: 5   IEGKSLKLDAITTEDEKSV--FAVLLEDDSVKEIVLSGNTIGTEA--------------- 47

Query: 533 ASCKLKVIPN-LKSQSKLFNLDLSDNQ---ISGEIPNWVWEIGNGGLEYLNLSHNLLSSL 588
                + +   + S+  L   + SD     +  EIP  +  +    L+   L    LS  
Sbjct: 48  ----ARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 103

Query: 589 QRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIF 648
               +  +  +  +      +      +          +      ++     N+      
Sbjct: 104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI 163

Query: 649 FSLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDIL-----------GV 697
               +    G + E     +   +L       +G  P  +  +                 
Sbjct: 164 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQ 223

Query: 698 LNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANC------RKLEVLDLGNN 751
            N   +  S  L++       L+ L LN+  L      ++ +         L+ L L  N
Sbjct: 224 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 283

Query: 752 KIRDTFPCWL-----KNISSLRVLVLRSNSF 777
           +I       L     + +  L  L L  N F
Sbjct: 284 EIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 0.002
 Identities = 39/322 (12%), Positives = 94/322 (29%), Gaps = 25/322 (7%)

Query: 284 TLQTLDLSGNSLLRGSLPDFPK----NSSLRTLMLSYANFSG----VLPDSIGNLKNLSR 335
           +++   L  +++              + S++ ++LS           L ++I + K+L  
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 336 LDLA---RCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPG 392
            + +      +   IP +L  L Q +      +       +   +     +D  +   P 
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 393 AISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYS 452
                    L       +       ++ +   + P L+ ++   N+      +    ++ 
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 453 ALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNN 512
           +   L          + M    ++   I  L    L    +L  +    N      S   
Sbjct: 184 SHRLLHT--------VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 235

Query: 513 LTVNASGDSSFPSQVRTLRLASCKLKVIPN---LKSQSKLFNLDLSDNQISGEIPNWVWE 569
                S  +     +    L++     + +         L  L L  N+I  +    +  
Sbjct: 236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 295

Query: 570 I---GNGGLEYLNLSHNLLSSL 588
           +       L +L L+ N  S  
Sbjct: 296 VIDEKMPDLLFLELNGNRFSEE 317

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.4 bits (112), Expect = 5e-07
 Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 27/123 (21%)

Query: 336 LDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNL--------------- 380
           L LA  +L+  +   L +L  + +LDLS N+     P+L   + L               
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 381 -------THLDLSNNALPGAISSTDWEHLSNLVYVDLRNNAL---NGSIPRSLFSIPMLQ 430
                    L L NN L  + +         LV ++L+ N+L    G   R    +P + 
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120

Query: 431 QLL 433
            +L
Sbjct: 121 SIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 6e-06
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 19/111 (17%)

Query: 528 RTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVW------------------- 568
           R L LA   L V+ +L+    + +LDLS N++    P                       
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 569 EIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPR 619
                 L+ L L +N L        +     + +L+L  N L        R
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 111

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 7e-06
 Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 5/108 (4%)

Query: 577 YLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIP 636
            L+L+H  L+ L     +  L L+T LDL  N+L+   P       L     +       
Sbjct: 2   VLHLAHKDLTVLC---HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 637 GDIGNSMNFTIFFSLSSNSITGV-IPETICRAKYLLVLDLSNNKLSGK 683
             + N         L +N +      + +     L++L+L  N L  +
Sbjct: 59  DGVANLPRLQEL-LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 2e-05
 Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 5/111 (4%)

Query: 479 KILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLK 538
           ++L L+   L     L  +++L  +  L+LS+N L       ++    +  L+ +   L+
Sbjct: 1   RVLHLAHKDLTV---LCHLEQLLLVTHLDLSHNRLRALPPALAALRC-LEVLQASDNALE 56

Query: 539 VIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQ 589
            +  + +  +L  L L +N++          +    L  LNL  N L   +
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQEE 106

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 286 QTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSG 345
           + L L+   L    L    +   +  L LS+     + P ++  L+ L  L  +      
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNA--L 55

Query: 346 SIPTSLAKLTQLVYLDLSSNKF--VGPIPSLHMSKNLTHLDLSNNAL 390
                +A L +L  L L +N+      I  L     L  L+L  N+L
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 7e-05
 Identities = 19/106 (17%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 409 DLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPI 468
            L +  L  ++   L  + ++  L L++N+     P  +      +      A+      
Sbjct: 4   HLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVL----QASDNALEN 57

Query: 469 PMSIFELKNLKILMLSSNKLNGTVQLAAIQRLRNLIRLELSYNNLT 514
              +  L  L+ L+L +N+L  +  +  +     L+ L L  N+L 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 650 SLSSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTL 709
            L+   +T  +   + +   +  LDLS+N+L    P   +     L VL    N+L    
Sbjct: 4   HLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNALENVD 59

Query: 710 SVTFPGNCGLQTLDLNENQL-GGTVPKSLANCRKLEVLDLGNNKI 753
            V        Q L L  N+L      + L +C +L +L+L  N +
Sbjct: 60  GVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 0.001
 Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 4/103 (3%)

Query: 861 LSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMN 920
           L + T +D S N      P  +  L+ L  L  S NA        + NL +L+ L L  N
Sbjct: 19  LLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNAL--ENVDGVANLPRLQELLLCNN 75

Query: 921 HLSDQIPIQ-LANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPT 962
            L     IQ L +   L +LNL  N+L     +  +L    P+
Sbjct: 76  RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 46.0 bits (107), Expect = 6e-06
 Identities = 39/195 (20%), Positives = 67/195 (34%), Gaps = 9/195 (4%)

Query: 229 PSLAKLQSLSVICLDQNDLSSPVPEFLADFFNLTSLNLSSSGLNGTFPETILQVHT-LQT 287
           P++   +  +V C     L   +P  +    + T L L+ + L     + +      L  
Sbjct: 3   PAMCHCEGTTVDC-TGRGLKE-IPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVK 58

Query: 288 LDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLARCNLSGSI 347
           L+L  N L       F   S ++ L L       +       L  L  L+L    +S  +
Sbjct: 59  LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118

Query: 348 PTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVY 407
           P S   L  L  L+L+SN F         ++ L    L+  A            + ++  
Sbjct: 119 PGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGA----PSKVRDVQI 174

Query: 408 VDLRNNALNGSIPRS 422
            DL ++    S   S
Sbjct: 175 KDLPHSEFKCSSENS 189

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.2 bits (103), Expect = 3e-05
 Identities = 34/199 (17%), Positives = 66/199 (33%), Gaps = 30/199 (15%)

Query: 329 NLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNN 388
                 + +L + +++ ++  +  +L  +  +  +++     +  +    N+T L L+ N
Sbjct: 22  AFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQGIQYLPNVTKLFLNGN 78

Query: 389 ALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEF-- 446
            L      TD + L+NL  +       N     S        + L   +     I     
Sbjct: 79  KL------TDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVH 132

Query: 447 ----------SNASYSALDTLDLSANRLEGPIPMSIFE------LKNLKILMLSSNKLNG 490
                     +N          L+           I +      L  L+ L LS N ++ 
Sbjct: 133 LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD 192

Query: 491 TVQLAAIQRLRNLIRLELS 509
              L A+  L+NL  LEL 
Sbjct: 193 ---LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 4e-05
 Identities = 23/197 (11%), Positives = 62/197 (31%), Gaps = 17/197 (8%)

Query: 722 LDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSI 781
            +L +  +   V ++      ++ +   N+ I+      ++ + ++  L L  N      
Sbjct: 29  DNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTD-- 82

Query: 782 TCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIF 841
                    P+  + ++          +   +            + N       L+    
Sbjct: 83  -------IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ 135

Query: 842 YQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGP 901
            + +     K  ++ ++  L+   ++    N     +P  +  L  L  L  S+N     
Sbjct: 136 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD- 192

Query: 902 IPSTIGNLQQLESLDLS 918
               +  L+ L+ L+L 
Sbjct: 193 -LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 3e-04
 Identities = 36/204 (17%), Positives = 77/204 (37%), Gaps = 18/204 (8%)

Query: 547 SKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLH 606
           ++    +L    ++  +           ++ +  +++ + S+     I  L  +T L L+
Sbjct: 24  AETIKDNLKKKSVTDAVTQNELN----SIDQIIANNSDIKSV---QGIQYLPNVTKLFLN 76

Query: 607 SNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSLSSNSITGVIPETICR 666
            N+L    P     A L +        +   D+ +  +     SLS           +  
Sbjct: 77  GNKLTDIKPL----ANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVH 132

Query: 667 AKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNE 726
              L  L L NNK++       +   D L + + + + +         G   LQ L L++
Sbjct: 133 LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSK 187

Query: 727 NQLGGTVPKSLANCRKLEVLDLGN 750
           N +  +  ++LA  + L+VL+L +
Sbjct: 188 NHI--SDLRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 4/69 (5%)

Query: 885 LKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHN 944
                  N  + +    +  T   L  ++ +  + + +     IQ   L  ++ L L+ N
Sbjct: 23  FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGN 78

Query: 945 NLEGNIPVS 953
            L    P++
Sbjct: 79  KLTDIKPLA 87

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 28/149 (18%), Positives = 44/149 (29%), Gaps = 2/149 (1%)

Query: 283 HTLQTLDLSGNSLLRGSLPDFPKNSSLRTLMLSYANFSGVLP-DSIGNLKNLSRLDLARC 341
           H    L  + +  L  SL   P   +L  L +        L    +  L  L  L + + 
Sbjct: 8   HGSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 342 NLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEH 401
            L    P +     +L  L+LS N             +L  L LS N L  + +    + 
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQR 126

Query: 402 LSNLVYVDLRNNALNGSIPRSLFSIPMLQ 430
                   +    L       L  +P   
Sbjct: 127 WEEEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 3e-04
 Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 6/135 (4%)

Query: 350 SLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVD 409
                 +   LDL   K                +D S+N +        +  L  L  + 
Sbjct: 13  QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLL 69

Query: 410 LRNNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLS---ANRLEG 466
           + NN +         ++P L +L+L NN           AS  +L  L +        + 
Sbjct: 70  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 129

Query: 467 PIPMSIFELKNLKIL 481
                I+++  +++L
Sbjct: 130 YRLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 18/147 (12%), Positives = 49/147 (33%), Gaps = 2/147 (1%)

Query: 710 SVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCW-LKNISSLR 768
           +  +      + LDL   ++   +    A   + + +D  +N+IR       L+ + +L 
Sbjct: 11  AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLL 69

Query: 769 VLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSN 828
           V   R       +     D +  +L    +        +      ++  ++ +    + +
Sbjct: 70  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 129

Query: 829 FKDVHFELLTDIFYQDVVTVTWKGREM 855
           ++      +  +   D   V  K R+ 
Sbjct: 130 YRLYVIYKVPQVRVLDFQKVKLKERQE 156

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 21/149 (14%), Positives = 48/149 (32%), Gaps = 6/149 (4%)

Query: 531 RLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQR 590
           +L +  ++      +  +   LDL   +I   I N    +     + ++ S N +  L  
Sbjct: 2   KLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQ--FDAIDFSDNEIRKLDG 58

Query: 591 PYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFS 650
              +  L  + V +    ++   +     +   +  +NNS       D   S+    +  
Sbjct: 59  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 118

Query: 651 LSS---NSITGVIPETICRAKYLLVLDLS 676
           +      +        I +   + VLD  
Sbjct: 119 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 147

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 35/196 (17%), Positives = 71/196 (36%), Gaps = 21/196 (10%)

Query: 322 VLPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLT 381
           +  D+   L    +  L + N++ ++  S   L Q+  L          I  +    NLT
Sbjct: 11  IFTDT--ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKS-IDGVEYLNNLT 65

Query: 382 HLDLSNNALPGAISSTDWEHLSNLVYVDLRNNALNGSIPRSLFSIPM------------- 428
            ++ SNN L       +   L +++  + +   +      +  +                
Sbjct: 66  QINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 125

Query: 429 -LQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNK 487
            L  L              + +  ++L  L+ S+N++    P  +  L  L+ L +SSNK
Sbjct: 126 NLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNK 183

Query: 488 LNGTVQLAAIQRLRNL 503
           ++    LA +  L +L
Sbjct: 184 VSDISVLAKLTNLESL 199

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.003
 Identities = 23/145 (15%), Positives = 44/145 (30%), Gaps = 15/145 (10%)

Query: 251 VPEFLADFFNLTSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLPDFPKN-SSL 309
           +   ++  ++ +   L   GL       ++  +    L+   +  +  +L    +N   L
Sbjct: 12  LKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNRRSS--MAATLRIIEENIPEL 67

Query: 310 RTLMLSYANFSGV--LPDSIGNLKNLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKF 367
            +L LS      +  +   +    NL  L+L+   L         K  +L  L L  N  
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 368 VGPIPS--------LHMSKNLTHLD 384
                               L  LD
Sbjct: 128 SDTFRDQSTYISAIRERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.004
 Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 4/126 (3%)

Query: 495 AAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQ-SKLFNLD 553
             + +  +  +  L    L   +  D    +    L   S     +  ++    +L +L+
Sbjct: 14  LIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLN 71

Query: 554 LSDNQISGEIPNWVWEIGNGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGN 613
           LS+N++               L+ LNLS N L S +          +  L L  N L   
Sbjct: 72  LSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLSDT 130

Query: 614 IPHPPR 619
                 
Sbjct: 131 FRDQST 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1042
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	100.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.97
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.96
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.95
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.93
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.92
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.92
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.9
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.9
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.89
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.87
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.87
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.87
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.87
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.84
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.82
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.81
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.72
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.66
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.63
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.58
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.56
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.56
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.51
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.64
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.54
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.08

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=0  Score=295.77  Aligned_cols=273  Identities=34%  Similarity=0.523  Sum_probs=153.9

Q ss_pred             CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--CCCCEEECCC---CCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9968879999998831877987642346887899973--4571243999---9889997899998420279987434777
Q 001624           29 QCQSDQQSLLLQMKSSLVFNSSLSFRMVQWSQSTDCC--TWCGVDCDEA---GRVIGLDLSEESISGRIDNSSPLLSLKY  103 (1042)
Q Consensus        29 ~~~~~~~~~ll~~k~~~~~~~~~~~~l~~W~~~~~~c--~w~gv~C~~~---~~v~~L~L~~~~l~g~~~~~~~l~~l~~  103 (1042)
                      -|.++||+||++||+++.+ |.   .+++|..++|||  .|+||+|+..   +||++|+|+++++.|....|++++++++
T Consensus         2 ~c~~~e~~aLl~~k~~~~~-~~---~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~   77 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGN-PT---TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY   77 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTC-CG---GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred             CCCHHHHHHHHHHHHHCCC-CC---CCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHCCCC
T ss_conf             9898999999999997799-98---6778899999988948896974899947988998989988888879847846753


Q ss_pred             CCEEECCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf             88221888-88999888975689999989979898888877332223798809937798789998645799867997227
Q 001624          104 LQSLNLAF-NMFNATEIPSGLGNLTNLTHLNLSNAGFAGQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNL  182 (1042)
Q Consensus       104 L~~L~Ls~-n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~~l~~l  182 (1042)
                      |++|+|++ |.+.|. +|..++++++|++|++++|.+.+..+..+..+.+|+.++++.|                     
T Consensus        78 L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N---------------------  135 (313)
T d1ogqa_          78 LNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN---------------------  135 (313)
T ss_dssp             CSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS---------------------
T ss_pred             CCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCC---------------------
T ss_conf             352020265433300-2431145420011020356434433222220111001111224---------------------


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCC-
Q ss_conf             3454013898568875033678863049995299935876889998543699999889788999999834754189998-
Q 001624          183 AELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLAKLQSLSVICLDQNDLSSPVPEFLADFFNL-  261 (1042)
Q Consensus       183 ~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L-  261 (1042)
                                                             .+.+.+|..+.+++.++.+++++|.+.+.+|..+..+..+ 
T Consensus       136 ---------------------------------------~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~  176 (313)
T d1ogqa_         136 ---------------------------------------ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF  176 (313)
T ss_dssp             ---------------------------------------EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC
T ss_pred             ---------------------------------------CCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             ---------------------------------------55556851220674000000235533562031214431123


Q ss_pred             CEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             7999438889999415431689878997779999998999-999999885898577113644872356899999997217
Q 001624          262 TSLNLSSSGLNGTFPETILQVHTLQTLDLSGNSLLRGSLP-DFPKNSSLRTLMLSYANFSGVLPDSIGNLKNLSRLDLAR  340 (1042)
Q Consensus       262 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  340 (1042)
                      +.++++.|.+.+..+..+..+..+ .++++.+... +.++ .+..++.++.++++++.+.+.++ .++.+++|+.|++++
T Consensus       177 ~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~  253 (313)
T d1ogqa_         177 TSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLE-GDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRN  253 (313)
T ss_dssp             CEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEE-ECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCS
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCC
T ss_conf             231022464353324332222222-3333334332-2222222222221112222222222222-222455444444765


Q ss_pred             CCCCCCCCHHCCCCCCCCEEECCCCCCCC
Q ss_conf             87999852000189998999846885657
Q 001624          341 CNLSGSIPTSLAKLTQLVYLDLSSNKFVG  369 (1042)
Q Consensus       341 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  369 (1042)
                      |.+++.+|..++++++|++|++++|++++
T Consensus       254 N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g  282 (313)
T d1ogqa_         254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             SCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred             CEECCCCCHHHHCCCCCCEEECCCCCCCC
T ss_conf             70666087688479999989795883516

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=0  Score=267.14  Aligned_cols=259  Identities=28%  Similarity=0.476  Sum_probs=189.5

Q ss_pred             CCCEEECCCCCCCC--CCCHHHHHCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             88679855874754--46715765069652788889-8554546888888877759968897465557823528999959
Q 001624          669 YLLVLDLSNNKLSG--KMPTCLIKMSDILGVLNLRG-NSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEV  745 (1042)
Q Consensus       669 ~L~~L~Ls~N~l~~--~~p~~~~~~~~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  745 (1042)
                      +++.|++++|.++|  .+|..+.++ +.|++|++++ |.++|.+|..|+++++|++|+|++|++.+..+..+..+.+|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L-~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCCHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHCC
T ss_conf             9889989899888888798478467-533520202654333002431145420011020356434433222220111001


Q ss_pred             EECCCCCCCCCCCHHHHCCCCCCEEEECCCEEEEECCCCCCCCCCCCC-CEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf             978898245565811113899758981176210102688778999963-3994468978777874555222230046210
Q 001624          746 LDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPML-QIVDIASNNFGGRVPQKCITSWKAMMSDEDE  824 (1042)
Q Consensus       746 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i~~~~~~~~l~~L-~~Ldls~n~l~~~~p~~~~~~~~~~~~~~~~  824 (1042)
                      +++++|.+.+.+|.++.+++.++.+++++|.+.+.+  |..+..+..+ +.+++++|++.+..|....            
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~i--p~~~~~l~~l~~~l~~~~n~l~~~~~~~~~------------  195 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI--PDSYGSFSKLFTSMTISRNRLTGKIPPTFA------------  195 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC--CGGGGCCCTTCCEEECCSSEEEEECCGGGG------------
T ss_pred             CCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------
T ss_conf             111224555568512206740000002355335620--312144311232310224643533243322------------


Q ss_pred             CCCCCCCCEEEECCCCCEEEEEEEEECCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf             02466541011013410000368875173256665113420899227812214862435668885897778854456871
Q 001624          825 AQSNFKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPS  904 (1042)
Q Consensus       825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~  904 (1042)
                                                         . .....++++.+...|.+|..++.++.++.+++++|.+++.+| 
T Consensus       196 -----------------------------------~-l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-  238 (313)
T d1ogqa_         196 -----------------------------------N-LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-  238 (313)
T ss_dssp             -----------------------------------G-CCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-
T ss_pred             -----------------------------------C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
T ss_conf             -----------------------------------2-222233333343322222222222221112222222222222-


Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             222879998577658714344450132777688034557700025999986664488656799899999999999
Q 001624          905 TIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIPVSTQLQSFSPTSFEGNEGLCGAPLNVCP  979 (1042)
Q Consensus       905 ~l~~l~~L~~LdLs~N~l~g~ip~~l~~L~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~~~~~~c~  979 (1042)
                      .++.++.|+.|||++|+++|.+|+.+++++.|++|||++|+|+|.||...++.++....+.||+.+||.|++.|.
T Consensus       239 ~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp~c~  313 (313)
T d1ogqa_         239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSCCC
T ss_pred             CCCCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCC
T ss_conf             222455444444765706660876884799999897958835166898666799897886889500198988989

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=100.00  E-value=3.8e-38  Score=213.46  Aligned_cols=187  Identities=27%  Similarity=0.327  Sum_probs=110.3

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEEC
Q ss_conf             65278888985545468888888777599688974655578235289999599788982455658111138997589811
Q 001624          694 ILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLR  773 (1042)
Q Consensus       694 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  773 (1042)
                      .++.+++++|.+++..+  +...++|+.|++++|.++.  ...+..+++|+.+++++|++++..+  +..+++|+.|+++
T Consensus       198 ~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~  271 (384)
T d2omza2         198 NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG  271 (384)
T ss_dssp             TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred             CCCEEECCCCCCCCCCC--CCCCCCCCEEECCCCCCCC--CCHHHCCCCCCHHCCCCCCCCCCCC--CCCCCCCCEEECC
T ss_conf             32333035774478786--4445778788887777789--6134325653410044674478775--3554668775456


Q ss_pred             CCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEECCC
Q ss_conf             76210102688778999963399446897877787455522223004621002466541011013410000368875173
Q 001624          774 SNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGR  853 (1042)
Q Consensus       774 ~N~l~~~i~~~~~~~~l~~L~~Ldls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  853 (1042)
                      +|++.+..    .+..++.++.++++.|.+.+. + .                                           
T Consensus       272 ~~~l~~~~----~~~~~~~l~~l~~~~n~l~~~-~-~-------------------------------------------  302 (384)
T d2omza2         272 ANQISNIS----PLAGLTALTNLELNENQLEDI-S-P-------------------------------------------  302 (384)
T ss_dssp             SSCCCCCG----GGTTCTTCSEEECCSSCCSCC-G-G-------------------------------------------
T ss_pred             CCCCCCCC----CCCCCCCCCCCCCCCCCCCCC-C-C-------------------------------------------
T ss_conf             74457877----323565222233232333332-2-1-------------------------------------------


Q ss_pred             HHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf             25666511342089922781221486243566888589777885445687122287999857765871434445013277
Q 001624          854 EMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANL  933 (1042)
Q Consensus       854 ~~~~~~~~~~l~~ldLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~L  933 (1042)
                          ...++.++.+++++|++++..  .+..++.|+.|++++|++++ ++ .++++++|+.||+++|++++.+|  +.++
T Consensus       303 ----~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l  372 (384)
T d2omza2         303 ----ISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANL  372 (384)
T ss_dssp             ----GGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTC
T ss_pred             ----CCHHCCCCEEECCCCCCCCCC--CCCCCCCCCEEECCCCCCCC-CH-HHCCCCCCCEEECCCCCCCCCHH--HCCC
T ss_conf             ----000024676777788778984--53668988989898998999-74-67089999989897995899800--0039


Q ss_pred             CCCCEEECCCCC
Q ss_conf             768803455770
Q 001624          934 TFLSVLNLSHNN  945 (1042)
Q Consensus       934 ~~L~~L~ls~N~  945 (1042)
                      +.|+.|++++|-
T Consensus       373 ~~L~~L~L~~Na  384 (384)
T d2omza2         373 TRITQLGLNDQA  384 (384)
T ss_dssp             TTCSEEECCCEE
T ss_pred             CCCCEEECCCCC
T ss_conf             999996397895

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=100.00  E-value=1.3e-36  Score=205.44  Aligned_cols=55  Identities=18%  Similarity=0.359  Sum_probs=21.9

Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf             34208992278122148624356688858977788544568712228799985776587
Q 001624          862 SIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMN  920 (1042)
Q Consensus       862 ~~l~~ldLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N  920 (1042)
                      +.++.|++++|++++ +| .+.++++|+.|++++|++++.+|  ++++++|+.|+|++|
T Consensus       329 ~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         329 TKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             TTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCEEECCCCCCCC-CH-HHCCCCCCCEEECCCCCCCCCHH--HCCCCCCCEEECCCC
T ss_conf             988989898998999-74-67089999989897995899800--003999999639789

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.2e-33  Score=185.35  Aligned_cols=84  Identities=14%  Similarity=0.153  Sum_probs=37.6

Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC------CCCCCC
Q ss_conf             34208992278122148624356688858977788544568712228799985776587143444501------327776
Q 001624          862 SIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQ------LANLTF  935 (1042)
Q Consensus       862 ~~l~~ldLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~------l~~L~~  935 (1042)
                      +.++.+++++|.+++..+..+.+++.|++|+|++|+++ .+|+.+.++++|+.|+|++|+|+...+..      ...+..
T Consensus       195 ~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~  273 (305)
T d1xkua_         195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS  273 (305)
T ss_dssp             TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCHHHCCCCCHHCCCCC
T ss_conf             41330154455332223454334433224302554002-46311033467898989898657638100267210021588


Q ss_pred             CCEEECCCCCC
Q ss_conf             88034557700
Q 001624          936 LSVLNLSHNNL  946 (1042)
Q Consensus       936 L~~L~ls~N~l  946 (1042)
                      |+.+++++|.+
T Consensus       274 L~~L~L~~N~~  284 (305)
T d1xkua_         274 YSGVSLFSNPV  284 (305)
T ss_dssp             CSEEECCSSSS
T ss_pred             CCEEECCCCCC
T ss_conf             89788989957

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-33  Score=188.25  Aligned_cols=226  Identities=22%  Similarity=0.199  Sum_probs=144.3

Q ss_pred             EECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC-CC
Q ss_conf             98558747544671576506965278888985545468888888777599688974655578235289999599788-98
Q 001624          673 LDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLG-NN  751 (1042)
Q Consensus       673 L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls-~N  751 (1042)
                      ++.++.+++ .+|..+   ++.+++|+|++|+++.+.+..|.+++.|++|++++|++....+..+..+..++.++.. .|
T Consensus        16 v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EECCCCCCC-CCCCCC---CCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             984799989-449788---9998889774881798797786414213000013445433211121222222222222102


Q ss_pred             CCCCCCCHHHHCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             24556581111389975898117621010268877899996339944689787778745552222300462100246654
Q 001624          752 KIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKD  831 (1042)
Q Consensus       752 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i~~~~~~~~l~~L~~Ldls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~  831 (1042)
                      .++...+..|.++++|+.|++++|.+....  +......++|+.+++++|.+.+..+ ..+                   
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~l~l~~N~l~~i~~-~~f-------------------  149 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDNALQALPD-DTF-------------------  149 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCT-TTT-------------------
T ss_pred             CCCCCCCHHHCCCCCCCEEECCCCCCCCCC--CCCCCHHCCCCHHHHCCCCCCCCCH-HHH-------------------
T ss_conf             235446201010102778756885443201--3533200012110200143144580-574-------------------


Q ss_pred             CEEEECCCCCEEEEEEEEECCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             10110134100003688751732566651134208992278122148624356688858977788544568712228799
Q 001624          832 VHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQ  911 (1042)
Q Consensus       832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~  911 (1042)
                                                 ...+.++.|++++|++++..+..|.+++.|+.+++++|++++..|..|.++++
T Consensus       150 ---------------------------~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~  202 (284)
T d1ozna_         150 ---------------------------RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR  202 (284)
T ss_dssp             ---------------------------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             ---------------------------CCCCCHHHCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             ---------------------------04340502231417656625666546563413142114346628167665320


Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf             9857765871434445013277768803455770002599
Q 001624          912 LESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGNIP  951 (1042)
Q Consensus       912 L~~LdLs~N~l~g~ip~~l~~L~~L~~L~ls~N~l~g~iP  951 (1042)
                      |+.||+++|++++..|..+.+++.|+.+++++|++.+..+
T Consensus       203 L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
T ss_conf             0023333352210000023554656889811998878756

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.7e-32  Score=179.68  Aligned_cols=83  Identities=24%  Similarity=0.366  Sum_probs=30.7

Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             20899227812214862435668885897778854456871222879998577658714344450132777688034557
Q 001624          864 FTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSH  943 (1042)
Q Consensus       864 l~~ldLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~L~~L~~L~ls~  943 (1042)
                      ++.+++++|..++.++..+..++.++.|++++|++++..+..+.++++|+.|+|++|+|+ .+|..+.+++.|++|++++
T Consensus       173 L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~  251 (305)
T d1xkua_         173 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN  251 (305)
T ss_dssp             CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCS
T ss_pred             CCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC-CCCCCCCCCCCCCEEECCC
T ss_conf             678989788677888267641341330154455332223454334433224302554002-4631103346789898989


Q ss_pred             CCCC
Q ss_conf             7000
Q 001624          944 NNLE  947 (1042)
Q Consensus       944 N~l~  947 (1042)
                      |+|+
T Consensus       252 N~i~  255 (305)
T d1xkua_         252 NNIS  255 (305)
T ss_dssp             SCCC
T ss_pred             CCCC
T ss_conf             8657

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-32  Score=184.28  Aligned_cols=91  Identities=16%  Similarity=0.170  Sum_probs=45.4

Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             13420899227812214862435668885897778854456871222879998577658714344450132777688034
Q 001624          861 LSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLN  940 (1042)
Q Consensus       861 ~~~l~~ldLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~L~~L~~L~  940 (1042)
                      ++.++.+++++|++++..|..|..+++|+.|++++|.+.+..|..++.+.+|+.|++++|.+.+.-+. ..-...++.+.
T Consensus       176 l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~-~~l~~~l~~~~  254 (284)
T d1ozna_         176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFR  254 (284)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCC
T ss_pred             CCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC-HHHHHHHHHCC
T ss_conf             56341314211434662816766532000233333522100000235546568898119988787564-69999998673


Q ss_pred             CCCCCCCCCCCC
Q ss_conf             557700025999
Q 001624          941 LSHNNLEGNIPV  952 (1042)
Q Consensus       941 ls~N~l~g~iP~  952 (1042)
                      ...+++.+..|.
T Consensus       255 ~~~~~~~C~~p~  266 (284)
T d1ozna_         255 GSSSEVPCSLPQ  266 (284)
T ss_dssp             SEECCCBEEESG
T ss_pred             CCCCCEEECCCH
T ss_conf             888866747966

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.7e-31  Score=174.96  Aligned_cols=200  Identities=21%  Similarity=0.210  Sum_probs=120.6

Q ss_pred             CCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             88679855874754467157650696527888898554546888888877759968897465557823528999959978
Q 001624          669 YLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDL  748 (1042)
Q Consensus       669 ~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  748 (1042)
                      .+..+|.+++.++ .+|..+   ++.++.|+|++|.+++..+..|.++++|++|+|++|+++.. + .+..+++|+.|++
T Consensus        11 ~~~~v~C~~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEEC
T ss_pred             CCEEEECCCCCCC-EECCCC---CCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCCCCC
T ss_conf             9869980699988-619675---76889898849928985977863456552213566544443-1-1111223211111


Q ss_pred             CCCCCCCCCCHHHHCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf             89824556581111389975898117621010268877899996339944689787778745552222300462100246
Q 001624          749 GNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSN  828 (1042)
Q Consensus       749 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i~~~~~~~~l~~L~~Ldls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~  828 (1042)
                      ++|+++.. +..+..+++|+.|++                          ++|.+....+..                  
T Consensus        85 s~N~l~~~-~~~~~~l~~L~~L~l--------------------------~~~~~~~~~~~~------------------  119 (266)
T d1p9ag_          85 SHNQLQSL-PLLGQTLPALTVLDV--------------------------SFNRLTSLPLGA------------------  119 (266)
T ss_dssp             CSSCCSSC-CCCTTTCTTCCEEEC--------------------------CSSCCCCCCSST------------------
T ss_pred             CCCCCCCC-CCCCCCCCCCCCCCC--------------------------CCCCCCEEECCC------------------
T ss_conf             22222111-112122222222222--------------------------223110110011------------------


Q ss_pred             CCCCEEEECCCCCEEEEEEEEECCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf             65410110134100003688751732566651134208992278122148624356688858977788544568712228
Q 001624          829 FKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGN  908 (1042)
Q Consensus       829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~  908 (1042)
                                                   ...+..+..+++++|.+++..+..+..++.++.+++++|++++..++.++.
T Consensus       120 -----------------------------~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~  170 (266)
T d1p9ag_         120 -----------------------------LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG  170 (266)
T ss_dssp             -----------------------------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTT
T ss_pred             -----------------------------CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC
T ss_conf             -----------------------------222211112212434210221233322111000000015652237200134


Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf             79998577658714344450132777688034557700025
Q 001624          909 LQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNNLEGN  949 (1042)
Q Consensus       909 l~~L~~LdLs~N~l~g~ip~~l~~L~~L~~L~ls~N~l~g~  949 (1042)
                      +++|+.|||++|+|+ .+|.++..++.|+.|+|++|.+.+.
T Consensus       171 l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         171 LENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             CTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             CCCCCEEECCCCCCC-CCCHHHCCCCCCCEEEECCCCCCCC
T ss_conf             212423430139785-5686677788899998369998788

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.7e-28  Score=162.63  Aligned_cols=178  Identities=23%  Similarity=0.142  Sum_probs=100.1

Q ss_pred             CCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             88679855874754467157650696527888898554546888888877759968897465557823528999959978
Q 001624          669 YLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDL  748 (1042)
Q Consensus       669 ~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  748 (1042)
                      .++.|++++|++++..+..+..+ ++|+.|++++|+++...  .++.+++|+.|++++|+++. .+..+..+++|+.|++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l-~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTC-TTCCEEECTTSCCCEEE--CCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEEC
T ss_pred             CCCEEECCCCCCCCCCHHHHHCC-CCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC
T ss_conf             88989884992898597786345-65522135665444431--11112232111112222211-1112122222222222


Q ss_pred             CCCCCCCCCCHHHHCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf             89824556581111389975898117621010268877899996339944689787778745552222300462100246
Q 001624          749 GNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSN  828 (1042)
Q Consensus       749 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i~~~~~~~~l~~L~~Ldls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~  828 (1042)
                      ++|++....+..+..+.+++.|++++|.+....  +..+.                                        
T Consensus       108 ~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~--~~~~~----------------------------------------  145 (266)
T d1p9ag_         108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLP--PGLLT----------------------------------------  145 (266)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC--TTTTT----------------------------------------
T ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEC--CCCCC----------------------------------------
T ss_conf             223110110011222211112212434210221--23332----------------------------------------


Q ss_pred             CCCCEEEECCCCCEEEEEEEEECCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf             65410110134100003688751732566651134208992278122148624356688858977788544568712228
Q 001624          829 FKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGN  908 (1042)
Q Consensus       829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~  908 (1042)
                                                     .++.++.+++++|++++..+..|..++.|+.|+|++|+++ .+|+.+..
T Consensus       146 -------------------------------~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~  193 (266)
T d1p9ag_         146 -------------------------------PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG  193 (266)
T ss_dssp             -------------------------------TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred             -------------------------------CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHCC
T ss_conf             -------------------------------2111000000015652237200134212423430139785-56866777


Q ss_pred             CCCCCEEECCCCCCCC
Q ss_conf             7999857765871434
Q 001624          909 LQQLESLDLSMNHLSD  924 (1042)
Q Consensus       909 l~~L~~LdLs~N~l~g  924 (1042)
                      ++.|+.|+|++|.+..
T Consensus       194 ~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         194 SHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TCCCSEEECCSCCBCC
T ss_pred             CCCCCEEEECCCCCCC
T ss_conf             8889999836999878

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.95  E-value=6.5e-24  Score=138.43  Aligned_cols=312  Identities=23%  Similarity=0.250  Sum_probs=0.0

Q ss_pred             CCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf             99999721787999852000189998999846885657788657999846998659999998881000379986387434
Q 001624          332 NLSRLDLARCNLSGSIPTSLAKLTQLVYLDLSSNKFVGPIPSLHMSKNLTHLDLSNNALPGAISSTDWEHLSNLVYVDLR  411 (1042)
Q Consensus       332 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~  411 (1042)
                      ++++|+++++.++ .+|   ...++|++|++++|+++.....   ..+|+.|++++|.+. .++..    .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~-~lp---~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~-~l~~l----p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLP---ELPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCS-CCC---SCCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECC
T ss_pred             CCCEEEECCCCCC-CCC---CCCCCCCEEECCCCCCCCCCCC---HHHHHHHHHHHCCCC-HHHHH----CCCCCCCCCC
T ss_conf             9989993799988-788---9878988898999979633620---332033266551432-03210----2211111334


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHCCCCCCEEECCCCCCCCC
Q ss_conf             74258768701269987768985698788988843232357677555446667798872110338688998127736562
Q 001624          412 NNALNGSIPRSLFSIPMLQQLLLANNKFGGPIPEFSNASYSALDTLDLSANRLEGPIPMSIFELKNLKILMLSSNKLNGT  491 (1042)
Q Consensus       412 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  491 (1042)
                      +|.+. .+| .+..++.|+.+++.++.+......     ...+..+.+..+...  ....+..++.++.+.+..|... .
T Consensus       107 ~n~l~-~lp-~~~~l~~L~~L~l~~~~~~~~~~~-----~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~-~  176 (353)
T d1jl5a_         107 NNQLE-KLP-ELQNSSFLKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK-K  176 (353)
T ss_dssp             SSCCS-SCC-CCTTCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCS-S
T ss_pred             CCCCC-CCC-CHHHHCCCEEECCCCCCCCCCCCC-----CCCCCCHHHCCCCCC--CCCCCCCCCCCEECCCCCCCCC-C
T ss_conf             55432-221-001101312311356510013223-----333210000122222--3332000122200111233443-2


Q ss_pred             CCHHHHHHCCCCCEEECCCCEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHC
Q ss_conf             23588871346886874475104405999888655238981788898789988999504998789978897674576413
Q 001624          492 VQLAAIQRLRNLIRLELSYNNLTVNASGDSSFPSQVRTLRLASCKLKVIPNLKSQSKLFNLDLSDNQISGEIPNWVWEIG  571 (1042)
Q Consensus       492 i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~L~~~~l~~l~~l~~l~~L~~L~Ls~n~i~~~~p~~~~~~~  571 (1042)
                      ++                            ......+.+....+.+..++....++.++.+++++|... ..+.....  
T Consensus       177 ~~----------------------------~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~-~~~~~~~~--  225 (353)
T d1jl5a_         177 LP----------------------------DLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDLPPS--  225 (353)
T ss_dssp             CC----------------------------CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS-SCCSCCTT--
T ss_pred             CC----------------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC--
T ss_conf             22----------------------------212222223344432222122345553331222542223-45532334--


Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf             89731998557766567788654557874088547881123489999997389665884556899881243333204540
Q 001624          572 NGGLEYLNLSHNLLSSLQRPYSISDLNLMTVLDLHSNQLQGNIPHPPRNAVLVDYSNNSFTSSIPGDIGNSMNFTIFFSL  651 (1042)
Q Consensus       572 ~~~L~~L~ls~n~l~~l~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~l~ls~n~~~~~~~~~~~~~~~~L~~L~l  651 (1042)
                         +..+.+.++.+...+....     .+...++..+.+.                              .+..+.....
T Consensus       226 ---l~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~------------------------------~l~~l~~~~~  267 (353)
T d1jl5a_         226 ---LEALNVRDNYLTDLPELPQ-----SLTFLDVSENIFS------------------------------GLSELPPNLY  267 (353)
T ss_dssp             ---CCEEECCSSCCSCCCCCCT-----TCCEEECCSSCCS------------------------------EESCCCTTCC
T ss_pred             ---CCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCC------------------------------CCCCCCCHHC
T ss_conf             ---3332223333344433344-----3222222223332------------------------------2234530001


Q ss_pred             CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             36742345531112157886798558747544671576506965278888985545468888888777599688974655
Q 001624          652 SSNSITGVIPETICRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGG  731 (1042)
Q Consensus       652 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  731 (1042)
                      ..+.....++.....+++|+.|++++|+++ .+|..+    ++|+.|++++|+++.....    +.+|+.|++++|+++ 
T Consensus       268 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~----~~L~~L~L~~N~L~~l~~~----~~~L~~L~L~~N~L~-  337 (353)
T d1jl5a_         268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP----PRLERLIASFNHLAEVPEL----PQNLKQLHVEYNPLR-  337 (353)
T ss_dssp             EEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCCCC----TTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCS-
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCCCC----CCCCEEECCCCCCCCCCCC----CCCCCEEECCCCCCC-
T ss_conf             233335753234566898898979799168-356654----8799898999968754532----288898987699189-


Q ss_pred             CCCCCCCCCCCCC
Q ss_conf             5782352899995
Q 001624          732 TVPKSLANCRKLE  744 (1042)
Q Consensus       732 ~~p~~l~~l~~L~  744 (1042)
                      .+|.....+.+|+
T Consensus       338 ~lp~~~~~L~~L~  350 (353)
T d1jl5a_         338 EFPDIPESVEDLR  350 (353)
T ss_dssp             SCCCCCTTCCEEE
T ss_pred             CCCCCCCCCCEEE
T ss_conf             7776526567128

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.8e-29  Score=165.47  Aligned_cols=397  Identities=20%  Similarity=0.197  Sum_probs=0.0

Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC----CCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCHHH
Q ss_conf             778822188888999888975689999989979898888----8773322237988099377987899986457998679
Q 001624          102 KYLQSLNLAFNMFNATEIPSGLGNLTNLTHLNLSNAGFA----GQIPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSG  177 (1042)
Q Consensus       102 ~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~----~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~  177 (1042)
                      ..|++||++++.+++..+.+.+..+++++.|+|++|.++    ..++..+..+++|+.|++++|.+       ...++..
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i-------~~~~~~~   74 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL-------GDVGVHC   74 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC-------HHHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCC-------CHHHHHH
T ss_conf             987779820895886899999976779999982899998899999999985399988897959859-------7289999


Q ss_pred             HHHCCC----CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCC-----CCCCCCEEECCCCCCC
Q ss_conf             972273----4540138985688750336788630499952999358768899985436-----9999988978899999
Q 001624          178 LLQNLA----ELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSCYLSGPIHPSLA-----KLQSLSVICLDQNDLS  248 (1042)
Q Consensus       178 ~l~~l~----~L~~L~l~~~~l~~~~~~~l~~l~~~~~~L~~L~Ls~~~l~~~~~~~l~-----~l~~L~~L~Ls~n~i~  248 (1042)
                      ....+.    +|+.|+++++.+++.+...+......++.|++|++++|.++......+.     ................
T Consensus        75 l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  154 (460)
T d1z7xw1          75 VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS  154 (460)
T ss_dssp             HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             HHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf             99998437887788778887754322101211000034320024443320234555544301355433322222232220


Q ss_pred             CC----CHHHHHCCCCCCEEECCCCCCCCCCHHHH-----HCCCCCCEEECCCCCCCCCCCCCCCC----CCCCCEEECC
Q ss_conf             98----34754189998799943888999941543-----16898789977799999989999999----9988589857
Q 001624          249 SP----VPEFLADFFNLTSLNLSSSGLNGTFPETI-----LQVHTLQTLDLSGNSLLRGSLPDFPK----NSSLRTLMLS  315 (1042)
Q Consensus       249 ~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~~~~~~~~~~~~----l~~L~~L~L~  315 (1042)
                      ..    ....+.....++.+.++.+.........+     ........+++..+.........+..    .+.++.+.+.
T Consensus       155 ~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~  234 (460)
T d1z7xw1         155 AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG  234 (460)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHH
T ss_conf             01100112223333222223322221245555432343321122100124112454210110122332222221001002


Q ss_pred             CCCCCC-----CCCCCCCCCCCCCEEECCCCCCC----CCCCHHCCCCCCCCEEECCCCCCCCCCCCCC------CCCCC
Q ss_conf             711364-----48723568999999972178799----9852000189998999846885657788657------99984
Q 001624          316 YANFSG-----VLPDSIGNLKNLSRLDLARCNLS----GSIPTSLAKLTQLVYLDLSSNKFVGPIPSLH------MSKNL  380 (1042)
Q Consensus       316 ~n~l~~-----~~~~~l~~l~~L~~L~Ls~n~l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~------~~~~L  380 (1042)
                      .+.+..     ...........++.+++++|.+.    ......+...+.++.+++++|.+........      ....|
T Consensus       235 ~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L  314 (460)
T d1z7xw1         235 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL  314 (460)
T ss_dssp             SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC
T ss_pred             HCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCC
T ss_conf             11223344201100011111110000134543321233433221112343334444433322456421110123334443


Q ss_pred             CEEECCCCCCCCC----CCCCCCCCCCCCCEECCCCCCCCCCCCCCC-----CCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf             6998659999998----881000379986387434742587687012-----6998776898569878898884323235
Q 001624          381 THLDLSNNALPGA----ISSTDWEHLSNLVYVDLRNNALNGSIPRSL-----FSIPMLQQLLLANNKFGGPIPEFSNASY  451 (1042)
Q Consensus       381 ~~L~L~~n~l~~~----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~~~~~~~~  451 (1042)
                      +.++++.+.+...    +... +...++|++|++++|.++......+     ...+.|+.|++++|.+++.........+
T Consensus       315 ~~l~l~~~~l~~~~~~~l~~~-~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l  393 (460)
T d1z7xw1         315 ESLWVKSCSFTAACCSHFSSV-LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL  393 (460)
T ss_dssp             CEEECTTSCCBGGGHHHHHHH-HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHCCCC-CCCCCCHHHHHEEEECCCCCCCCHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHH
T ss_conf             333233341023344321332-2110111132012101357664001112204567778898979979759999999999


Q ss_pred             ---CCCCEEECCCCCCCCCCCCCHH-----CCCCCCEEECCCCCCCCCCCHHH---HHHCCCCCEE
Q ss_conf             ---7677555446667798872110-----33868899812773656223588---8713468868
Q 001624          452 ---SALDTLDLSANRLEGPIPMSIF-----ELKNLKILMLSSNKLNGTVQLAA---IQRLRNLIRL  506 (1042)
Q Consensus       452 ---~~L~~L~Ls~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~i~~~~---~~~l~~L~~L  506 (1042)
                         ++|++|++++|.++......+.     +...|+.|++.++.+........   ....|+|+.+
T Consensus       394 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         394 LANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             HHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             HCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf             629988989899996987999999999974788667898989878989999999999759998995

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.8e-25  Score=142.78  Aligned_cols=223  Identities=13%  Similarity=0.071  Sum_probs=150.7

Q ss_pred             CEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECC
Q ss_conf             679855874754467157650696527888898554546888888877759968897465557-8235289999599788
Q 001624          671 LVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTV-PKSLANCRKLEVLDLG  749 (1042)
Q Consensus       671 ~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls  749 (1042)
                      +.++.++..++ .+|..+.   ..++.|++++|+++...+.+|.++++|++|++++|.+...+ +..|.+++.++.+.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEECCCCC-CCCCCCC---CCCCEEECCCCCCCCCCHHHHHCCCHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf             99998189988-7688889---9889998769918964966861464323211022112420100112222222221111


Q ss_pred             -CCCCCCCCCHHHHCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf             -9824556581111389975898117621010268877899996339944689787778745552222300462100246
Q 001624          750 -NNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSN  828 (1042)
Q Consensus       750 -~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i~~~~~~~~l~~L~~Ldls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~  828 (1042)
                       .|++....+..|.++++|+.+++++|.+.... .......+..+......++.+.. ++...+.               
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~-~~~~~~~l~~l~~~~~~n~~l~~-i~~~~~~---------------  149 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLP-DVHKIHSLQKVLLDIQDNINIHT-IERNSFV---------------  149 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCC-CCTTTCBSSCEEEEEESCTTCCE-ECTTSST---------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC---------------
T ss_conf             123432222221222222222234211112554-33322211112222222121112-2222222---------------


Q ss_pred             CCCCEEEECCCCCEEEEEEEEECCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCE-EECCCCCCCCCCCCCCC
Q ss_conf             65410110134100003688751732566651134208992278122148624356688858-97778854456871222
Q 001624          829 FKDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYG-LNFSQNAFGGPIPSTIG  907 (1042)
Q Consensus       829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldLs~N~l~g~ip~~l~~l~~L~~-L~Ls~N~l~g~ip~~l~  907 (1042)
                                                    .....+..+++++|+++...+..+. ...++. +++++|+++...+..|.
T Consensus       150 ------------------------------~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~  198 (242)
T d1xwdc1         150 ------------------------------GLSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFH  198 (242)
T ss_dssp             ------------------------------TSBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTT
T ss_pred             ------------------------------CCCCCCEEEECCCCCCCCCCCCCCC-CHHHHCCCCCCCCCCCCCCHHHHC
T ss_conf             ------------------------------2233100122001233332222222-011101212354324642478866


Q ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf             87999857765871434445013277768803455770
Q 001624          908 NLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLSHNN  945 (1042)
Q Consensus       908 ~l~~L~~LdLs~N~l~g~ip~~l~~L~~L~~L~ls~N~  945 (1042)
                      ++++|+.||+++|+++...+..+.+++.|+.+++.+.+
T Consensus       199 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~l~  236 (242)
T d1xwdc1         199 GASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK  236 (242)
T ss_dssp             TSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEESSS
T ss_pred             CCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCC
T ss_conf             89999989897992894597797377134147678898

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.92  E-value=1.3e-23  Score=136.83  Aligned_cols=186  Identities=22%  Similarity=0.301  Sum_probs=113.9

Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEE
Q ss_conf             96527888898554546888888877759968897465557823528999959978898245565811113899758981
Q 001624          693 DILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVL  772 (1042)
Q Consensus       693 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  772 (1042)
                      .+|+.|++.+|.++..  ..+..+++|+.|++++|++++..|  +..+++++.+++++|.++..  ..+.+++.|+.+++
T Consensus        41 ~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCCC--HHHHCCCCCCEEECCCCEEECCCC--CCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCC
T ss_conf             8868997779999766--457448888376357853202543--11233432012111222222--22222222212212


Q ss_pred             CCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEECC
Q ss_conf             17621010268877899996339944689787778745552222300462100246654101101341000036887517
Q 001624          773 RSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKG  852 (1042)
Q Consensus       773 ~~N~l~~~i~~~~~~~~l~~L~~Ldls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  852 (1042)
                      +++...+.    ..+...+.+..+.++.+.+....+                                            
T Consensus       115 ~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~--------------------------------------------  146 (227)
T d1h6ua2         115 TSTQITDV----TPLAGLSNLQVLYLDLNQITNISP--------------------------------------------  146 (227)
T ss_dssp             TTSCCCCC----GGGTTCTTCCEEECCSSCCCCCGG--------------------------------------------
T ss_pred             CCCCCCCC----CHHCCCCCHHHHHCHHHHHCHHHH--------------------------------------------
T ss_conf             22443311----000002301222000000000000--------------------------------------------


Q ss_pred             CHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf             32566651134208992278122148624356688858977788544568712228799985776587143444501327
Q 001624          853 REMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLAN  932 (1042)
Q Consensus       853 ~~~~~~~~~~~l~~ldLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~  932 (1042)
                           ....+.++.+++++|.+.+..  .+++++.|+.|++++|++++ +| .++++++|+.|+|++|++++..|  +++
T Consensus       147 -----~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~  215 (227)
T d1h6ua2         147 -----LAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVSP--LAN  215 (227)
T ss_dssp             -----GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCGG--GTT
T ss_pred             -----HCCCCCCCCCCCCCCCCCCCH--HHCCCCCCEECCCCCCCCCC-CH-HHCCCCCCCEEECCCCCCCCCCC--CCC
T ss_conf             -----010211100233333333100--10564633564458884177-85-34479999989795996899802--036


Q ss_pred             CCCCCEEECCC
Q ss_conf             77688034557
Q 001624          933 LTFLSVLNLSH  943 (1042)
Q Consensus       933 L~~L~~L~ls~  943 (1042)
                      ++.|+.|++++
T Consensus       216 l~~L~~L~lsn  226 (227)
T d1h6ua2         216 TSNLFIVTLTN  226 (227)
T ss_dssp             CTTCCEEEEEE
T ss_pred             CCCCCEEEEEC
T ss_conf             99989897129

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.90  E-value=6e-23  Score=133.35  Aligned_cols=52  Identities=17%  Similarity=0.288  Sum_probs=18.5

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             42089922781221486243566888589777885445687122287999857765
Q 001624          863 IFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLS  918 (1042)
Q Consensus       863 ~l~~ldLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs  918 (1042)
                      .++.||+++|++++ +| .+.++++|+.|++++|++++..  .++++++|+.||++
T Consensus       174 ~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         174 KLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             TCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             CCEECCCCCCCCCC-CH-HHCCCCCCCEEECCCCCCCCCC--CCCCCCCCCEEEEE
T ss_conf             33564458884177-85-3447999998979599689980--20369998989712

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=5.3e-23  Score=133.62  Aligned_cols=135  Identities=23%  Similarity=0.278  Sum_probs=88.9

Q ss_pred             CEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             6798558747544671576506965278888985545-468888888777599688974655578235289999599788
Q 001624          671 LVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSG-TLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLG  749 (1042)
Q Consensus       671 ~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  749 (1042)
                      +.++.++++++ .+|..+   +..++.|+|++|++++ ..+..|.++++|+.|++++|.+....+..|..+++|+.|+++
T Consensus        11 ~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEECCCCC-CCCCCC---CCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf             99997089967-029898---97878898489877553020025787627213013632212121222112222101003


Q ss_pred             CCCCCCCCCHHHHCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCHHH
Q ss_conf             98245565811113899758981176210102688778999963399446897877787455
Q 001624          750 NNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKC  811 (1042)
Q Consensus       750 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i~~~~~~~~l~~L~~Ldls~n~l~~~~p~~~  811 (1042)
                      +|+++...+.+|.++++|++|+|++|.+.+..  +..+..+++|+++++++|++.+..+..+
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~--~~~f~~l~~L~~l~L~~N~~~~~~~~~~  146 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVM--PGSFEHLNSLTSLNLASNPFNCNCHLAW  146 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEEC--TTSSTTCTTCCEEECTTCCBCCSGGGHH
T ss_pred             CCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC--HHHHCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf             55344349799807974655245774535359--7785687533420003644343530277

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.89  E-value=6.4e-22  Score=127.94  Aligned_cols=77  Identities=31%  Similarity=0.418  Sum_probs=53.0

Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             13420899227812214862435668885897778854456871222879998577658714344450132777688034
Q 001624          861 LSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLN  940 (1042)
Q Consensus       861 ~~~l~~ldLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~L~~L~~L~  940 (1042)
                      ++.++.++++.|.+++  +..+..++.|+.+++++|++++. + .+.++++|+.|||++|+++. +| .++++++|++|+
T Consensus       133 l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~  206 (210)
T d1h6ta2         133 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLE  206 (210)
T ss_dssp             CTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEE
T ss_pred             CCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCEEECCCCCCCC-CH-HHCCCCCCCEEE
T ss_conf             1112221122233345--43100013321001346430256-4-53678989999897998998-72-116999989997


Q ss_pred             CCC
Q ss_conf             557
Q 001624          941 LSH  943 (1042)
Q Consensus       941 ls~  943 (1042)
                      +++
T Consensus       207 Ls~  209 (210)
T d1h6ta2         207 LFS  209 (210)
T ss_dssp             EEE
T ss_pred             CCC
T ss_conf             118

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.87  E-value=5.3e-21  Score=123.11  Aligned_cols=73  Identities=40%  Similarity=0.522  Sum_probs=48.2

Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             1342089922781221486243566888589777885445687122287999857765871434445013277768803
Q 001624          861 LSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVL  939 (1042)
Q Consensus       861 ~~~l~~ldLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~L~~L~~L  939 (1042)
                      ++.++.+++++|++.. + +.+..++.|+.|++++|++++..  .++++++|+.||+++|+++. ++ .+++++.|+.|
T Consensus       127 l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         127 LTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             HHHHHHHHHHHHHHCC-C-CCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCC-CC-CCCCCCCCCCC
T ss_conf             2236776431111002-3-43332111111223455556770--11679989999787997998-81-01278998949

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.87  E-value=4.2e-22  Score=128.88  Aligned_cols=81  Identities=32%  Similarity=0.437  Sum_probs=25.4

Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEECC
Q ss_conf             52788889855454688888887775996889746555782352899995997889824556581111389975898117
Q 001624          695 LGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRS  774 (1042)
Q Consensus       695 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  774 (1042)
                      |+.|++++|.+.+..+..|..+++|+.|+|++|+++...+.+|.++++|+.|+|++|++++..+.+|..+++|++|+|++
T Consensus        56 L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~  135 (192)
T d1w8aa_          56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC
T ss_conf             72130136322121212221122221010035534434979980797465524577453535977856875334200036


Q ss_pred             C
Q ss_conf             6
Q 001624          775 N  775 (1042)
Q Consensus       775 N  775 (1042)
                      |
T Consensus       136 N  136 (192)
T d1w8aa_         136 N  136 (192)
T ss_dssp             C
T ss_pred             C
T ss_conf             4

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.3e-21  Score=126.23  Aligned_cols=51  Identities=14%  Similarity=0.051  Sum_probs=24.7

Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             922781221486243566888589777885445687122287999857765
Q 001624          868 DFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLS  918 (1042)
Q Consensus       868 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs  918 (1042)
                      ++++|+++...+..|.++++|+.|++++|+++...+..+.+++.|+.+++.
T Consensus       183 ~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         183 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             CTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             CCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf             235432464247886689999989897992894597797377134147678

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.87  E-value=3e-21  Score=124.40  Aligned_cols=163  Identities=21%  Similarity=0.269  Sum_probs=90.7

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEEC
Q ss_conf             65278888985545468888888777599688974655578235289999599788982455658111138997589811
Q 001624          694 ILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLR  773 (1042)
Q Consensus       694 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  773 (1042)
                      +++.|++++|.++...  .+..+++|+.|++++|++++..  .+..+++|+.|++++|++++. | .+..+++|+.|+++
T Consensus        47 ~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEECT
T ss_pred             CCCEEECCCCCCCCCH--HHHHCCCCCEEECCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCCCCCC
T ss_conf             8458978279888744--4764899898769896025860--113586212014333332122-2-12122211122345


Q ss_pred             CCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEECCC
Q ss_conf             76210102688778999963399446897877787455522223004621002466541011013410000368875173
Q 001624          774 SNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNFKDVHFELLTDIFYQDVVTVTWKGR  853 (1042)
Q Consensus       774 ~N~l~~~i~~~~~~~~l~~L~~Ldls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  853 (1042)
                      +|.+..    ...+..++.++.++++.|.+....+                                             
T Consensus       121 ~~~~~~----~~~l~~l~~l~~l~~~~n~l~~~~~---------------------------------------------  151 (210)
T d1h6ta2         121 HNGISD----INGLVHLPQLESLYLGNNKITDITV---------------------------------------------  151 (210)
T ss_dssp             TSCCCC----CGGGGGCTTCCEEECCSSCCCCCGG---------------------------------------------
T ss_pred             CCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCC---------------------------------------------
T ss_conf             653221----1220111112221122233345431---------------------------------------------


Q ss_pred             HHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             256665113420899227812214862435668885897778854456871222879998577658
Q 001624          854 EMELVKILSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSM  919 (1042)
Q Consensus       854 ~~~~~~~~~~l~~ldLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~  919 (1042)
                          ...++.++.+++++|++++. + .+.+++.|+.|++++|+++. +| .+.++++|+.|||++
T Consensus       152 ----~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         152 ----LSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             ----GGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             ----CCCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCEEECCCCCCCC-CH-HHCCCCCCCEEECCC
T ss_conf             ----00013321001346430256-4-53678989999897998998-72-116999989997118

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.1e-21  Score=125.19  Aligned_cols=227  Identities=18%  Similarity=0.185  Sum_probs=0.0

Q ss_pred             CEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCCEEECC
Q ss_conf             67985587475446715765069652788889855454688888887775996889746555-78235289999599788
Q 001624          671 LVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGT-VPKSLANCRKLEVLDLG  749 (1042)
Q Consensus       671 ~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls  749 (1042)
                      +.+|++++.+.......+..  .....+.++...........+... +|++||+++|.++.. +...+..+++|+.|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~~~~~~~-~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCCSCCCCB-CCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCCHHHHHHHH--CCCEEEECCCCCCCCCHHHHCCCC-CCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf             77978999788147999874--554274652333455224425678-788788989845777999999748776514523


Q ss_pred             CCCCCCCCCHHHHCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             98245565811113899758981176210102688778999963399446897877787455522223004621002466
Q 001624          750 NNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWPMLQIVDIASNNFGGRVPQKCITSWKAMMSDEDEAQSNF  829 (1042)
Q Consensus       750 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i~~~~~~~~l~~L~~Ldls~n~l~~~~p~~~~~~~~~~~~~~~~~~~~~  829 (1042)
                      +|++++..+..+..+++|+.|++++|.-.+..........+++|+.|+++++..                          
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~--------------------------  133 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD--------------------------  133 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT--------------------------
T ss_pred             CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC--------------------------
T ss_conf             467986789998518997571510013412355403657887435652245332--------------------------


Q ss_pred             CCCEEEECCCCCEEEEEEEEECCCHHHHHHHCCCCCEEECCCCCCC---CCCCCCCCCCCCCCEEECCC-CCCCCCCCCC
Q ss_conf             5410110134100003688751732566651134208992278122---14862435668885897778-8544568712
Q 001624          830 KDVHFELLTDIFYQDVVTVTWKGREMELVKILSIFTSIDFSRNNFD---GPIPEKIGRLKSLYGLNFSQ-NAFGGPIPST  905 (1042)
Q Consensus       830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldLs~N~l~---g~ip~~l~~l~~L~~L~Ls~-N~l~g~ip~~  905 (1042)
                                        ..-.+.........+.++.+++++....   ..+.....+++.|+.|++++ ..+++..+..
T Consensus       134 ------------------~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~  195 (284)
T d2astb2         134 ------------------FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE  195 (284)
T ss_dssp             ------------------CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred             ------------------CCCCCCHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             ------------------33322000100011111012213554244444343423232221235532234778303333


Q ss_pred             CCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf             22879998577658-7143444501327776880345577
Q 001624          906 IGNLQQLESLDLSM-NHLSDQIPIQLANLTFLSVLNLSHN  944 (1042)
Q Consensus       906 l~~l~~L~~LdLs~-N~l~g~ip~~l~~L~~L~~L~ls~N  944 (1042)
                      ++++++|+.|++++ +.+++.....+++++.|+.|+++++
T Consensus       196 l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         196 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             HCCCCCCCEEECCCCCCCCHHHHHHHHCCCCCCEEEEECC
T ss_conf             2135768779899999787378999726999898964488

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=1.1e-18  Score=110.95  Aligned_cols=51  Identities=29%  Similarity=0.466  Sum_probs=25.5

Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             1342089922781221486243566888589777885445687122287999857
Q 001624          861 LSIFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESL  915 (1042)
Q Consensus       861 ~~~l~~ldLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L  915 (1042)
                      ++.++.+++++|++++. + .+++++.|+.|++++|++++ ++ .++++++|++|
T Consensus       149 ~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         149 LTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             CCCCCCCCCCCCCCCCC-C-CCCCCCCCCEEECCCCCCCC-CC-CCCCCCCCCCC
T ss_conf             11111122345555677-0-11679989999787997998-81-01278998949

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.81  E-value=5.4e-21  Score=123.06  Aligned_cols=13  Identities=31%  Similarity=0.376  Sum_probs=4.5

Q ss_pred             CCCCCEEECCCCC
Q ss_conf             3868899812773
Q 001624          475 LKNLKILMLSSNK  487 (1042)
Q Consensus       475 l~~L~~L~L~~n~  487 (1042)
                      ...++.|++++|.
T Consensus        30 ~~~l~~L~Ls~n~   42 (344)
T d2ca6a1          30 DDSVKEIVLSGNT   42 (344)
T ss_dssp             CSCCCEEECTTSE
T ss_pred             CCCCCEEECCCCC
T ss_conf             8997889784983

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=8.8e-18  Score=106.13  Aligned_cols=110  Identities=22%  Similarity=0.145  Sum_probs=52.7

Q ss_pred             HCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             21578867985587475446715765069652788889855454688888887775996889746555782352899995
Q 001624          665 CRAKYLLVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLE  744 (1042)
Q Consensus       665 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  744 (1042)
                      .++..++.|++++|+++ .++.....+ +.|+.|++++|.++..  +.|..+++|+.|++++|+++...+..+..+++|+
T Consensus        15 ~n~~~lr~L~L~~n~I~-~i~~~~~~l-~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIP-VIENLGATL-DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCCGGGGT-TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CCCCCCCEEECCCCCCC-CCCCCCCCC-CCCCEEECCCCCCCCC--CCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf             68574848978899788-657620041-4599898979978764--7744576130643102134577763223345344


Q ss_pred             EEECCCCCCCCCCC-HHHHCCCCCCEEEECCCEEE
Q ss_conf             99788982455658-11113899758981176210
Q 001624          745 VLDLGNNKIRDTFP-CWLKNISSLRVLVLRSNSFY  778 (1042)
Q Consensus       745 ~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~  778 (1042)
                      .|++++|+++.... ..+..+++|+.|++++|++.
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             CCEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
T ss_conf             34203000166542110013653206640799634

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.1e-16  Score=100.27  Aligned_cols=15  Identities=13%  Similarity=0.372  Sum_probs=5.0

Q ss_pred             CCCCCEEECCCCCCC
Q ss_conf             877759968897465
Q 001624          716 NCGLQTLDLNENQLG  730 (1042)
Q Consensus       716 l~~L~~L~Ls~N~l~  730 (1042)
                      +++|+.|+|++|+++
T Consensus        40 l~~L~~L~Ls~N~i~   54 (162)
T d1a9na_          40 LDQFDAIDFSDNEIR   54 (162)
T ss_dssp             TTCCSEEECCSSCCC
T ss_pred             CCCCCEEECCCCCCC
T ss_conf             145998989799787

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=1.2e-15  Score=94.95  Aligned_cols=120  Identities=24%  Similarity=0.293  Sum_probs=0.0

Q ss_pred             CEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             67985587475446715765069652788889855454688888887775996889746555782352899995997889
Q 001624          671 LVLDLSNNKLSGKMPTCLIKMSDILGVLNLRGNSLSGTLSVTFPGNCGLQTLDLNENQLGGTVPKSLANCRKLEVLDLGN  750 (1042)
Q Consensus       671 ~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  750 (1042)
                      ++|++++|+++ .++. +..+ +.|+.|++++|.++ .+|..+..+++|+.|++++|.++..  ..+..+++|+.|++++
T Consensus         1 R~L~Ls~n~l~-~l~~-l~~l-~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCH-LEQL-LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCCC-GGGG-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCS
T ss_pred             CEEECCCCCCC-CCCC-CCCC-CCCCEEECCCCCCC-CCHHHHHHHHCCCCCCCCCCCCCCC--CCCCCCCCCCEEECCC
T ss_conf             98986899898-8710-1058-98898979787168-6521565543135453243211235--7412335557688889


Q ss_pred             CCCCCCCC-HHHHCCCCCCEEEECCCEEEEECCCCCCC-CCCCCCCEE
Q ss_conf             82455658-11113899758981176210102688778-999963399
Q 001624          751 NKIRDTFP-CWLKNISSLRVLVLRSNSFYGSITCREND-DSWPMLQIV  796 (1042)
Q Consensus       751 N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~i~~~~~~-~~l~~L~~L  796 (1042)
                      |+++.... ..+..+++|+.|++++|++......+..+ ..+|+++.+
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHHHHHCCCCCEE
T ss_conf             865888882565379999999897996886826799999989673138

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=6.2e-15  Score=91.13  Aligned_cols=100  Identities=18%  Similarity=0.176  Sum_probs=46.8

Q ss_pred             CCCCCCCCEEECCCC-CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEECCCEEEEECCCCCCCCCCC
Q ss_conf             888877759968897-4655578235289999599788982455658111138997589811762101026887789999
Q 001624          713 FPGNCGLQTLDLNEN-QLGGTVPKSLANCRKLEVLDLGNNKIRDTFPCWLKNISSLRVLVLRSNSFYGSITCRENDDSWP  791 (1042)
Q Consensus       713 ~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~i~~~~~~~~l~  791 (1042)
                      +..+++|+.|++++| .++...+.+|.++++|+.|++++|+++.+.+.+|..+++|++|+|++|++...   +.......
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l---~~~~~~~~  103 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL---SWKTVQGL  103 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC---CSTTTCSC
T ss_pred             CCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCC---CHHHHCCC
T ss_conf             257656574316898664436921225666667216202124774201112455433332267878515---74563353


Q ss_pred             CCCEEECCCCCCCCCCCHHHHHHH
Q ss_conf             633994468978777874555222
Q 001624          792 MLQIVDIASNNFGGRVPQKCITSW  815 (1042)
Q Consensus       792 ~L~~Ldls~n~l~~~~p~~~~~~~  815 (1042)
                      .|+.+++++|++.+..--.++..|
T Consensus       104 ~l~~L~L~~Np~~C~C~~~~l~~~  127 (156)
T d2ifga3         104 SLQELVLSGNPLHCSCALRWLQRW  127 (156)
T ss_dssp             CCCEEECCSSCCCCCGGGHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             212433579863388117999999

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.56  E-value=2.8e-17  Score=103.50  Aligned_cols=17  Identities=29%  Similarity=0.239  Sum_probs=5.8

Q ss_pred             HCCCCCCEEECCCCCCC
Q ss_conf             21578867985587475
Q 001624          665 CRAKYLLVLDLSNNKLS  681 (1042)
Q Consensus       665 ~~l~~L~~L~Ls~N~l~  681 (1042)
                      ..+++|+.|++++|+++
T Consensus        45 ~~L~~L~~L~Ls~n~I~   61 (198)
T d1m9la_          45 STLKACKHLALSTNNIE   61 (198)
T ss_dssp             HHTTTCCEEECSEEEES
T ss_pred             HCCCCCCEEECCCCCCC
T ss_conf             62604615199446899

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.2e-14  Score=87.34  Aligned_cols=82  Identities=22%  Similarity=0.202  Sum_probs=31.3

Q ss_pred             CCEEECCCCC-CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             2089922781-221486243566888589777885445687122287999857765871434445013277768803455
Q 001624          864 FTSIDFSRNN-FDGPIPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQLANLTFLSVLNLS  942 (1042)
Q Consensus       864 l~~ldLs~N~-l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~l~~L~~L~~L~ls  942 (1042)
                      ++.|++++|+ ++...+..|.+++.|+.|+|++|+++...|.+|..+++|+.|||++|+|+...+..+..+ .|+.|+++
T Consensus        33 l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~  111 (156)
T d2ifga3          33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLS  111 (156)
T ss_dssp             CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEECC
T ss_pred             CCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHCCC-CCCCCCCC
T ss_conf             57431689866443692122566666721620212477420111245543333226787851574563353-21243357


Q ss_pred             CCCC
Q ss_conf             7700
Q 001624          943 HNNL  946 (1042)
Q Consensus       943 ~N~l  946 (1042)
                      +|++
T Consensus       112 ~Np~  115 (156)
T d2ifga3         112 GNPL  115 (156)
T ss_dssp             SSCC
T ss_pred             CCCC
T ss_conf             9863

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.51  E-value=2.7e-16  Score=98.27  Aligned_cols=61  Identities=25%  Similarity=0.244  Sum_probs=25.6

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCC
Q ss_conf             42089922781221486243566888589777885445687-1222879998577658714344
Q 001624          863 IFTSIDFSRNNFDGPIPEKIGRLKSLYGLNFSQNAFGGPIP-STIGNLQQLESLDLSMNHLSDQ  925 (1042)
Q Consensus       863 ~l~~ldLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip-~~l~~l~~L~~LdLs~N~l~g~  925 (1042)
                      .++.+++++|+++. + +.+..++.|+.|++++|+++.... ..+..+++|+.|++++|.+...
T Consensus        94 ~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_          94 TLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HCCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             CCCCCCCCCCCCCC-C-CCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCEEECCCCCCCCC
T ss_conf             23333333322222-2-22222223411123410212554221236777630234279843467

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=2.7e-09  Score=61.43  Aligned_cols=82  Identities=23%  Similarity=0.156  Sum_probs=0.0

Q ss_pred             HHCCCCCEEECCCCCCCCC--CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-------
Q ss_conf             5113420899227812214--8624356688858977788544568712228799985776587143444501-------
Q 001624          859 KILSIFTSIDFSRNNFDGP--IPEKIGRLKSLYGLNFSQNAFGGPIPSTIGNLQQLESLDLSMNHLSDQIPIQ-------  929 (1042)
Q Consensus       859 ~~~~~l~~ldLs~N~l~g~--ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l~g~ip~~-------  929 (1042)
                      ..++.++.||+|+|+++..  ++..+..++.|+.|+|++|.++...+-...+...|+.|++++|.++......       
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HHCCCCCEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHH
T ss_conf             74878788637776666773158898658856100043572134234422203310426648997676766615699999


Q ss_pred             CCCCCCCCEEE
Q ss_conf             32777688034
Q 001624          930 LANLTFLSVLN  940 (1042)
Q Consensus       930 l~~L~~L~~L~  940 (1042)
                      +..+++|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
T ss_conf             99889978799

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.54  E-value=9e-08  Score=53.37  Aligned_cols=119  Identities=12%  Similarity=0.097  Sum_probs=0.0

Q ss_pred             CCCCCCCEEECCCCCCCCC-----CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             8999998997989888887-----73322237988099377987899986457998679972273454013898568875
Q 001624          124 GNLTNLTHLNLSNAGFAGQ-----IPIQVSAMTRLVTLDLSSSYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAP  198 (1042)
Q Consensus       124 ~~l~~L~~L~Ls~n~~~~~-----lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~  198 (1042)
                      .+.++|+.|+|+++.-.+.     +-..+...+.|+.|++++|.+    .......+...+...+.|++|+++++.+.+.
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l----~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~   87 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAI----SDSEARGLIELIETSPSLRVLNVESNFLTPE   87 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCC----BHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             HCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCC----CHHHHHHHHHHHHHCCCCCCEEEEHHHCCHH
T ss_conf             289998197827999989899999999976377645401201562----1567988753100023433003301021459


Q ss_pred             CHHHHHHHHCCCCCCCEEECCCCCCCCC-------CCCCCCCCCCCCEEECCCCC
Q ss_conf             0336788630499952999358768899-------98543699999889788999
Q 001624          199 GIEWCQALSSLVPKLRVLSLSSCYLSGP-------IHPSLAKLQSLSVICLDQND  246 (1042)
Q Consensus       199 ~~~~l~~l~~~~~~L~~L~Ls~~~l~~~-------~~~~l~~l~~L~~L~Ls~n~  246 (1042)
                      +...+.......+.|++|+++++.+...       +...+...+.|+.|+++.+.
T Consensus        88 g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          88 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf             9999999998489389877887768886579999999999729985386486888

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.08  E-value=7e-07  Score=48.67  Aligned_cols=124  Identities=14%  Similarity=0.109  Sum_probs=0.0

Q ss_pred             CCHHHHCCCCCCEEECCC-CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCC
Q ss_conf             733222379880993779-8789998645799867997227345401389856887503367886304999529993587
Q 001624          143 IPIQVSAMTRLVTLDLSS-SYSFGGPLKLENPNLSGLLQNLAELRALYLDGVNISAPGIEWCQALSSLVPKLRVLSLSSC  221 (1042)
Q Consensus       143 lp~~l~~l~~L~~L~L~~-n~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~l~~~~~~~l~~l~~~~~~L~~L~Ls~~  221 (1042)
                      +.....+.+.|++|++++ +.+    .......+...+...++|++|+++++.+.+.+...+.......+.++.+++++|
T Consensus         9 l~~~~~~~~~L~~L~L~~~~~i----~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~   84 (166)
T d1io0a_           9 LKRIQNNDPDLEEVNLNNIMNI----PVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN   84 (166)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTC----CHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHHCCCCCCEEECCCCCCC----CHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCC
T ss_conf             9999955999868876899998----989999999888419825743015896117789999987752122101210254


Q ss_pred             CCCCC----CCCCCCCCCCCCE--EECCCCCCCC----CCHHHHHCCCCCCEEECCCCC
Q ss_conf             68899----9854369999988--9788999999----834754189998799943888
Q 001624          222 YLSGP----IHPSLAKLQSLSV--ICLDQNDLSS----PVPEFLADFFNLTSLNLSSSG  270 (1042)
Q Consensus       222 ~l~~~----~~~~l~~l~~L~~--L~Ls~n~i~~----~~~~~l~~l~~L~~L~L~~n~  270 (1042)
                      .++..    +...+...+.|+.  |+++.|.+..    .+...+...+.|+.|+++.+.
T Consensus        85 ~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          85 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             CCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf             32201478899999848652477321677867679999999999849984788581898