Citrus Sinensis ID: 001632
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1041 | 2.2.26 [Sep-21-2011] | |||||||
| O04647 | 1038 | Pentatricopeptide repeat- | yes | no | 0.967 | 0.970 | 0.578 | 0.0 | |
| Q9SZ52 | 1112 | Pentatricopeptide repeat- | no | no | 0.750 | 0.702 | 0.24 | 2e-53 | |
| Q9M907 | 871 | Pentatricopeptide repeat- | no | no | 0.642 | 0.768 | 0.252 | 5e-53 | |
| Q5G1S8 | 1440 | Pentatricopeptide repeat- | no | no | 0.818 | 0.591 | 0.222 | 5e-44 | |
| O64624 | 822 | Pentatricopeptide repeat- | no | no | 0.553 | 0.700 | 0.231 | 2e-37 | |
| Q0WPZ6 | 874 | Pentatricopeptide repeat- | no | no | 0.567 | 0.676 | 0.225 | 9e-36 | |
| Q9LVQ5 | 1096 | Pentatricopeptide repeat- | no | no | 0.692 | 0.657 | 0.214 | 4e-35 | |
| Q9FMQ1 | 816 | Pentatricopeptide repeat- | no | no | 0.610 | 0.779 | 0.228 | 4e-35 | |
| Q9FJE6 | 907 | Putative pentatricopeptid | no | no | 0.537 | 0.617 | 0.222 | 7e-35 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.603 | 0.793 | 0.213 | 8e-35 |
| >sp|O04647|PP399_ARATH Pentatricopeptide repeat-containing protein At5g27270 OS=Arabidopsis thaliana GN=EMB976 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 1196 bits (3095), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 602/1040 (57%), Positives = 768/1040 (73%), Gaps = 33/1040 (3%)
Query: 4 LSSTFIATTTHFQFQHWNPKPPKKNSKISLKSR-----VRPDPWSLSDGSDITKPKPRSK 58
+ S F+ +TTHF + PK P +NS+IS+KS VRPDPWSLSDG+ KPKPR +
Sbjct: 1 MKSDFLTSTTHFNPSIFLPKIPSRNSRISIKSSSSSSKVRPDPWSLSDGNP-EKPKPRYE 59
Query: 59 NRKRPLSDDNARRILKAKAQYLSVLRRNQGPTAATPKWIKRTPEQMVKYLEDDRNGHLYG 118
K PLSDD+ARRI+K KAQYLS LRRNQG A TPKWIKRTPEQMV+YLEDDRNG +YG
Sbjct: 60 RPKHPLSDDDARRIIKKKAQYLSTLRRNQGSQAMTPKWIKRTPEQMVQYLEDDRNGQMYG 119
Query: 119 KHVVAAIKAVRAM----DGSRNVRVVMGSFVGKLSFREMCVVLKEQKGWRQATEFFAWMK 174
KHVVAAIK VR + GS ++R VM SFV KLSFR+MCVVLKEQ+GWRQ +FF+WMK
Sbjct: 120 KHVVAAIKTVRGLSQRRQGSDDMRFVMSSFVAKLSFRDMCVVLKEQRGWRQVRDFFSWMK 179
Query: 175 LQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNH 234
LQLSYRP VV YTI+LRLYGQVGKIK+AE+TFLEMLE GCEPD +ACGTMLCTYARWG H
Sbjct: 180 LQLSYRPSVVVYTIVLRLYGQVGKIKMAEETFLEMLEVGCEPDAVACGTMLCTYARWGRH 239
Query: 235 KAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLV 294
AMLTFY AV+ER I+ ST+V+NFMLSSL KKS+H KVIDLW +M+++GV P +FTYTLV
Sbjct: 240 SAMLTFYKAVQERRILLSTSVYNFMLSSLQKKSFHGKVIDLWLEMVEEGVPPNEFTYTLV 299
Query: 295 ISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGL 354
+SS+ K EEALK F EMKS GF PEEVTYS +ISLS+K G ++A+ LY+DMRS+G+
Sbjct: 300 VSSYAKQGFKEEALKAFGEMKSLGFVPEEVTYSSVISLSVKAGDWEKAIGLYEDMRSQGI 359
Query: 355 IPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQK 414
+PSNYTCA++LSLYYK ENY KALSLF++ME+ K+ ADEVI GL+IRIYGKLGL+ DAQ
Sbjct: 360 VPSNYTCATMLSLYYKTENYPKALSLFADMERNKIPADEVIRGLIIRIYGKLGLFHDAQS 419
Query: 415 TFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYV 474
F ETE+L LL+DEKTYLAM+QVHL S NV KALDVIE+MK+R++ LSRFAYIVMLQCY
Sbjct: 420 MFEETERLNLLADEKTYLAMSQVHLNSGNVVKALDVIEMMKTRDIPLSRFAYIVMLQCYA 479
Query: 475 MKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEEL 534
+++ AE F+ L+KTGLPDA SCNDMLNLY +L+L EKAKGFI I DQV FD EL
Sbjct: 480 KIQNVDCAEEAFRALSKTGLPDASSCNDMLNLYTRLNLGEKAKGFIKQIMVDQVHFDIEL 539
Query: 535 YRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVAS 594
Y++ M++YCKEGMV +A+ + +MG+ +KD++F+QT + +H + + +
Sbjct: 540 YKTAMRVYCKEGMVAEAQDLIVKMGREARVKDNRFVQTLAESMH--IVNKHDKHEAVLNV 597
Query: 595 NQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDG----MRLT 650
+QLD+MALGLML+L L + N ++ + IL L+ T GSS V+++I F+R+G +
Sbjct: 598 SQLDVMALGLMLNLRLKEGNLNETKAILNLMFKTDLGSSAVNRVISSFVREGDVSKAEMI 657
Query: 651 FKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKC 710
+++LG +++E A+LI YG+ KLKEA+ ++ AA S PGK V+RSMIDAY +C
Sbjct: 658 ADIIIRLGLRMEEETIATLIAVYGRQHKLKEAKRLYLAAGESKTPGKSVIRSMIDAYVRC 717
Query: 711 GKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAY 770
G ED Y L+ E+ +GC AV ISILVN LTN GKH +AE I + N++LDTV Y
Sbjct: 718 GWLEDAYGLFMESAEKGCDPGAVTISILVNALTNRGKHREAEHISRTCLEKNIELDTVGY 777
Query: 771 NTCIKAMLGAGKLHFAASIYERM----------------LVYGRGRKLDKALEMFNTARS 814
NT IKAML AGKL A+ IYERM VYGRG +LDKA+E+F+ AR
Sbjct: 778 NTLIKAMLEAGKLQCASEIYERMHTSGVPCSIQTYNTMISVYGRGLQLDKAIEIFSNARR 837
Query: 815 LGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNE 874
GL LDEK Y N++ YGK GK EA LFSEMQ++GIKPG SYN+++ + A + L++E
Sbjct: 838 SGLYLDEKIYTNMIMHYGKGGKMSEALSLFSEMQKKGIKPGTPSYNMMVKICATSRLHHE 897
Query: 875 VEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLS 934
V++L+QAM+R+G + TYL+L+Q Y E+++++EAE+TI ++++GIP S +H + LLS
Sbjct: 898 VDELLQAMERNGRCTDLSTYLTLIQVYAESSQFAEAEKTITLVKEKGIPLSHSHFSSLLS 957
Query: 935 AFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEE-VRESSES 993
A KAG+M EA R Y + AGI PD AC RT+LKGYM G E+GI +E+ +R S E
Sbjct: 958 ALVKAGMMEEAERTYCKMSEAGISPDSACKRTILKGYMTCGDAEKGILFYEKMIRSSVED 1017
Query: 994 DKFIMSAAVHLYRYAGKEHE 1013
D+F+ S LY+ GKE +
Sbjct: 1018 DRFVSSVVEDLYKAVGKEQD 1037
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 198/825 (24%), Positives = 361/825 (43%), Gaps = 44/825 (5%)
Query: 181 PCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTF 240
P VV YT+L+ K+ A++ F +M +PD + T+L ++ + ++ F
Sbjct: 291 PDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQF 350
Query: 241 YSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVK 300
+S +++ G VP F ++ +L K + D M D+G+ P TY +I ++
Sbjct: 351 WSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLR 410
Query: 301 GSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYT 360
L++AL+ F M+S G P TY I K G S AL ++ M+++G+ P+
Sbjct: 411 VHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVA 470
Query: 361 C-ASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAET 419
C ASL SL + +A +F ++ + D V Y ++++ Y K+G ++A K +E
Sbjct: 471 CNASLYSLAKAGRD-REAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEM 529
Query: 420 EQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDL 479
+ G D ++ + V++A + MK + + Y +L +
Sbjct: 530 MENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKI 589
Query: 480 GSAEGTFQTLAKTGL-PDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSV 538
A F+ + + G P+ + N + + K D A + + D Y ++
Sbjct: 590 QEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTI 649
Query: 539 MKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTEN-AEFGDKFVAS--- 594
+ K G V +A F +M K L F+ T C +L G + E K + +
Sbjct: 650 IFGLVKNGQVKEAMCFFHQMKK---LVYPDFV-TLCTLLPGVVKASLIEDAYKIITNFLY 705
Query: 595 NQLDLMA-------LGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVS--QLICKFIR- 644
N D A +G +L+ D+ S E+++ + G S +V + CK
Sbjct: 706 NCADQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNV 765
Query: 645 DGMRLTF-KFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVF-KAATVSCKPGKLVLRS 702
G R F KF LG LIG + ++ AQDVF + + C P
Sbjct: 766 SGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNF 825
Query: 703 MIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQD- 761
++DAY K GK ++++ LYKE + C + + +I+++ L G + A + ++ D
Sbjct: 826 LLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDR 885
Query: 762 NLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDE 821
+ Y I + +G+L+ A ++E ML Y G +
Sbjct: 886 DFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDY-------------------GCRPNC 926
Query: 822 KAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQA 881
Y L++ +GKAG+ A LF M +EG++P L +Y+++++ G +E +
Sbjct: 927 AIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKE 986
Query: 882 MQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQ-KQGIPPSCTHVNHLLSAFSKAG 940
++ G +P+ Y ++ ++ + EA N M+ +GI P N L+ AG
Sbjct: 987 LKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAG 1046
Query: 941 LMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFE 985
++ EA ++YNE AG+ P++ + +++GY G E +++
Sbjct: 1047 MVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQ 1091
|
Plays a role in the stabilization of the primary polycistronic transcript of the petL operon encoding subunits of the cytochrome b6-f complex. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 210 bits (534), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 188/744 (25%), Positives = 322/744 (43%), Gaps = 75/744 (10%)
Query: 278 QMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHG 337
+M G P+ T ++ VK + L E M+ F P Y+ LI
Sbjct: 123 EMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVN 182
Query: 338 KSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYG 397
SD L+L++ M+ G P+ + +L+ + K ALSL EM+ + AD V+Y
Sbjct: 183 HSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYN 242
Query: 398 LLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSR 457
+ I +GK+G + A K F E E GL DE TY +M V + +++A+++ E ++
Sbjct: 243 VCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKN 302
Query: 458 NMWLSRFAYIVMLQCYVMKEDLGSAEGTF--------QTLAKTGLPDAGSCNDMLNLYIK 509
+AY M+ Y GSA G F + AK +P + N +L K
Sbjct: 303 RRVPCTYAYNTMIMGY------GSA-GKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRK 355
Query: 510 LDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSK- 568
+ ++A ++KD + Y ++ + C+ G + A + + M K G + +
Sbjct: 356 MGKVDEALKVFEEMKKDAAP-NLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRT 414
Query: 569 ---FIQTFCKI--LHGGCTENAEFGDKFVASNQLDLMAL--GLMLSLYLTDDNFSKREKI 621
+ CK L C E K +++ +L GL + DD + EK+
Sbjct: 415 VNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLG-KVGRVDDAYKVYEKM 473
Query: 622 LKLLLHTAGGSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKE 681
L T + V SLI ++ H + ++
Sbjct: 474 LDSDCRT---------------------------------NSIVYTSLIKNFFNHGRKED 500
Query: 682 AQDVFK-AATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVN 740
++K +C P +L + +D K G+ E +++E A+ DA + SIL++
Sbjct: 501 GHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIH 560
Query: 741 TLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERM------- 793
L G + + ++ + LDT AYN I GK++ A + E M
Sbjct: 561 GLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEP 620
Query: 794 --LVYG-------RGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLF 844
+ YG + +LD+A +F A+S + L+ Y +L+ +GK G+ EA L+
Sbjct: 621 TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLIL 680
Query: 845 SEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEA 904
E+ ++G+ P L ++N +++ A NE Q+M+ +PN TY L+ +
Sbjct: 681 EELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKV 740
Query: 905 AKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACY 964
K+++A MQKQG+ PS ++S +KAG +AEA +++ A G +PD ACY
Sbjct: 741 RKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACY 800
Query: 965 RTMLKGYMDHGYIEEGINLFEEVR 988
M++G + + +LFEE R
Sbjct: 801 NAMIEGLSNGNRAMDAFSLFEETR 824
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 180 bits (457), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 214/960 (22%), Positives = 394/960 (41%), Gaps = 108/960 (11%)
Query: 154 CVVLKE--QKGWRQATEFFAWMKLQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLE 211
C V+K Q+ W++A E F W+ L+ + P +L + G+ + LA + F
Sbjct: 160 CFVVKSVGQESWQRALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEIFTR--- 216
Query: 212 AGCEP---DEIAC-GTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKS 267
EP D + M+ Y+R G A+++RG VP FN ++++ K
Sbjct: 217 --AEPTVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSG 274
Query: 268 --YHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVT 325
++L + + G+ P TY ++S+ + S L+ A+K F +M++ P+ T
Sbjct: 275 GLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWT 334
Query: 326 YSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEME 385
Y+ +IS+ + G + EA L+ ++ +G P T SLL + + N K ++ +M+
Sbjct: 335 YNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQ 394
Query: 386 KFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQL-GLLSDEKTYLAMAQ-VHLTSRN 443
K DE+ Y +I +YGK G + A + + + + L G D TY + + +R
Sbjct: 395 KMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRT 454
Query: 444 VEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGL-PDAGSCND 502
VE A + E++ + + Y ++ Y AE TF + ++G PD + +
Sbjct: 455 VEAAALMSEMLDV-GIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSV 513
Query: 503 MLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNG 562
ML++ ++ + T KA G + D LY ++ KE D ++ + +M +
Sbjct: 514 MLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEELC 573
Query: 563 SLKDSKFIQTFCKILHGGCTENAEFGDKFVASN--QLDLMALGLMLSLYLTDDNFSKREK 620
+ + K G C + A K +N +L+ L +L Y + S+ +
Sbjct: 574 GMNPLEISSVLVK---GECFDLAARQLKVAITNGYELENDTLLSILGSYSSSGRHSEAFE 630
Query: 621 ILKLLLHTAGGSS--VVSQLI---CKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGK 675
+L+ L A GS + LI CK L Y D V GS
Sbjct: 631 LLEFLKEHASGSKRLITEALIVLHCKVNNLSAALD-------EYFADPCVHGWCFGSSTM 683
Query: 676 HQKL----------KEAQDVFKAATVS-CKPGKLVLRSMIDAYAKCGKAEDVYLLYKEAT 724
++ L EA VF +S C+ + V +SM+ Y K G E + + +A
Sbjct: 684 YETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAE 743
Query: 725 AQGCALDAVAISILVNTLTNHGKH---EQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAG 781
+G + + + +GK ++AE ++ N Q D +N+ + A G
Sbjct: 744 TKG--FHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCG 801
Query: 782 KLHFAASIYERML-------------------VYGR--------------GRKLDKAL-- 806
A +I+ M+ V GR G K+ K+
Sbjct: 802 CYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSIL 861
Query: 807 ----------------EMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEE 850
+++++ ++ G + Y ++ K + +A ++ SEM+E
Sbjct: 862 LMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEA 921
Query: 851 GIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEA 910
K L +N ++ +Y A Y + ++ Q ++ G P+ TY +L+ Y + E
Sbjct: 922 NFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEG 981
Query: 911 EETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKG 970
+ M+ G+ P L+SAF K + +A +++ E L+ G+ D + Y TM+K
Sbjct: 982 YLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKI 1041
Query: 971 YMDHGYIEEGINLFEEVRESSESDKFIMSAAVHL----YRYAGKEHEANDILDSMNSVRI 1026
D G + L + ++ + A +HL Y +G EA +L ++ +
Sbjct: 1042 SRDSGSDSKAEKLLQMMKNAGIEPTL---ATMHLLMVSYSSSGNPQEAEKVLSNLKDTEV 1098
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940 OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 148/638 (23%), Positives = 284/638 (44%), Gaps = 62/638 (9%)
Query: 291 YTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKS-DEALSLYKDM 349
YT ++ ++ + E+A+ F MK G +P VTY+ ++ + K G+S + L + +M
Sbjct: 213 YTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEM 272
Query: 350 RSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLY 409
RS+GL +TC+++LS + +A F+E++ V Y L++++GK G+Y
Sbjct: 273 RSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVY 332
Query: 410 EDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVM 469
+A E E+ +D TY + ++ + ++A VIE+M + + + Y +
Sbjct: 333 TEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTV 392
Query: 470 LQCY--VMKEDLGSAEGTFQTLAKTG-LPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKD 526
+ Y KED A F ++ + G +P+ + N +L+L K + + + ++ +
Sbjct: 393 IDAYGKAGKED--EALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSN 450
Query: 527 QVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAE 586
+ + +++ + +GM + EM G D T +G C +
Sbjct: 451 GCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISA-YGRCGSEVD 509
Query: 587 FGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDG 646
+ ++ ++ Y N R+ + G +V+S + K G
Sbjct: 510 ASKMY---GEMTRAGFNACVTTYNALLNALARKGDWR------SGENVISDMKSK----G 556
Query: 647 MRLTFKFLMKLGYILDDEVTA---SLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSM 703
+ T + Y L + A + +G ++KE Q +F P ++LR++
Sbjct: 557 FKPT-----ETSYSLMLQCYAKGGNYLGIERIENRIKEGQ-IF--------PSWMLLRTL 602
Query: 704 IDAYAKC---GKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQ 760
+ A KC +E + L+K+ G D V + +++ T + ++QAE I+ + +
Sbjct: 603 LLANFKCRALAGSERAFTLFKK---HGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIRE 659
Query: 761 DNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLD 820
D L D V YN+ M +Y R + KA E+ T L D
Sbjct: 660 DGLSPDLVTYNSL-------------------MDMYVRRGECWKAEEILKTLEKSQLKPD 700
Query: 821 EKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQ 880
+Y ++ + + G EA + SEM E GI+P + +YN ++ Y A G++ E+E +I+
Sbjct: 701 LVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIE 760
Query: 881 AMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQ 918
M ++ PN T+ +V Y A KYSEA + ++ ++
Sbjct: 761 CMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIK 798
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140 OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 153 bits (386), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 170/753 (22%), Positives = 301/753 (39%), Gaps = 162/753 (21%)
Query: 248 GIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEA 307
GI P T FN ++ +L S +L+ +M +KG P +FT+ +++ + K L ++
Sbjct: 142 GIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKG 201
Query: 308 LKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSL 367
L+ N M+S G P +V Y+ ++S + G++D++ + + MR GL+P T S +S
Sbjct: 202 LELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISA 261
Query: 368 YYKNENYSKALSLFSEMEKFKVAA----DEVIYGLLIRIYGKLGLYEDAQKTFAETEQLG 423
K A +FS+ME + + + Y L+++ + K+GL EDA+ F +
Sbjct: 262 LCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRE-- 319
Query: 424 LLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAE 483
D + ++S N+W LQ V AE
Sbjct: 320 ------------------------NDDLASLQSYNIW---------LQGLVRHGKFIEAE 346
Query: 484 GTFQTLAKTGL-PDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIY 542
+ + G+ P S N +++ KL + AK + ++++ V D Y ++ Y
Sbjct: 347 TVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGY 406
Query: 543 CKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMAL 602
C G V A+ ++EM +N L ++ C IL L +L
Sbjct: 407 CSVGKVDAAKSLLQEMMRNNCLPNA----YTCNIL---------------------LHSL 441
Query: 603 GLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDGMRLTFKFLMKLGYILD 662
M S+ E++L+ + G V+ C I DG
Sbjct: 442 WKM-------GRISEAEELLRKMNEKGYGLDTVT---CNIIVDG---------------- 475
Query: 663 DEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKE 722
L GS +L +A ++ K V G L ++ ++Y + L+
Sbjct: 476 ------LCGS----GELDKAIEIVKGMRVH---GSAALGNLGNSY--------IGLVDDS 514
Query: 723 ATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGK 782
C D + S L+N L G+ +A+ + + L D+VAYN I GK
Sbjct: 515 LIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGK 574
Query: 783 LHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASL 842
+ A + + M + K+LE +N+ LGL + + + E
Sbjct: 575 ISSAFRVLKDM----EKKGCHKSLETYNSL-ILGLGIKNQIF--------------EIHG 615
Query: 843 LFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYT 902
L EM+E+GI P + +YN I + L+ M + +PN F++ L++A+
Sbjct: 616 LMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFC 675
Query: 903 EAAKYSEAEETINSM-----QKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGI 957
+ + A+E + QK+G+ + ++NE LAAG
Sbjct: 676 KVPDFDMAQEVFETAVSICGQKEGL----------------------YSLMFNELLAAG- 712
Query: 958 IPDLACYRTMLKGYMDHGYIEEGINLFEEVRES 990
L +L+ +D G+ E G L++++ ES
Sbjct: 713 --QLLKATELLEAVLDRGF-ELGTFLYKDLVES 742
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 174/813 (21%), Positives = 328/813 (40%), Gaps = 92/813 (11%)
Query: 227 TYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAP 286
Y R G + L + + G PS N +L S+ K V ++M+ + + P
Sbjct: 132 VYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICP 191
Query: 287 TDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLY 346
T+ ++I+ E++ +M+ +G+AP VTY+ ++ K G+ A+ L
Sbjct: 192 DVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELL 251
Query: 347 KDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKL 406
M+S+G+ T L+ ++ +K L +M K + +EV Y LI +
Sbjct: 252 DHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNE 311
Query: 407 GLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAY 466
G A + E GL + T+ A+ H++ N ++AL + +M+++ + S +Y
Sbjct: 312 GKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSY 371
Query: 467 IVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKD 526
V+L G C + + DL A+GF ++++
Sbjct: 372 GVLLD--------------------------GLCKNA-----EFDL---ARGFYMRMKRN 397
Query: 527 QVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKD----SKFIQTFCKILHGGCT 582
V Y ++ CK G + +A + EM K+G D S I FCK+
Sbjct: 398 GVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKV------ 451
Query: 583 ENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKF 642
+F + ++ + +Y S I L++ ++ C
Sbjct: 452 ------GRFKTAKEI-------VCRIYRV--GLSPNGIIYSTLIYNC------CRMGC-- 488
Query: 643 IRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATV-SCKPGKLVLR 701
+++ +R+ ++ ++ G+ D L+ S K K+ EA++ + T P +
Sbjct: 489 LKEAIRI-YEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFD 547
Query: 702 SMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQD 761
+I+ Y G+ + ++ E T G L+ L G +AE + +
Sbjct: 548 CLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAV 607
Query: 762 NLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDE 821
+DTV YNT + AM +G L A S++ M+ RS+ D
Sbjct: 608 PAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMV-----------------QRSI--LPDS 648
Query: 822 KAYMNLVSFYGKAGKTHEASLLFSEMQEEG-IKPGLISYNIIINVYAAAGLYNEVEKLIQ 880
Y +L+S + GKT A L E + G + P + Y ++ AG + +
Sbjct: 649 YTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFRE 708
Query: 881 AMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAG 940
M G +P+ T +++ Y+ K + + + M Q P+ T N LL +SK
Sbjct: 709 QMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRK 768
Query: 941 LMAEATRVYNESLAAGIIPD-LACYRTMLKGYMDHGYIEEGINLFEE-VRESSESDKFIM 998
++ + +Y + GI+PD L C+ +L G + +E G+ + + + E D++
Sbjct: 769 DVSTSFLLYRSIILNGILPDKLTCHSLVL-GICESNMLEIGLKILKAFICRGVEVDRYTF 827
Query: 999 SAAVHLYRYAGKEHEANDILDSMNSVRIPFMKN 1031
+ + G+ + A D++ M S+ I K+
Sbjct: 828 NMLISKCCANGEINWAFDLVKVMTSLGISLDKD 860
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 170/744 (22%), Positives = 286/744 (38%), Gaps = 108/744 (14%)
Query: 240 FYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFV 299
+ A++ GI PS+ +L L K R I+++ +++ P+ F Y I + V
Sbjct: 131 LFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAV 190
Query: 300 KGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNY 359
K S + + L+ FN MK P Y+ LI K + ++A L+ +M +R L+PS
Sbjct: 191 KLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLI 250
Query: 360 TCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAET 419
T +L+ Y K N K+ + M+ + + + L++ K G+ EDA+ E
Sbjct: 251 TYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEM 310
Query: 420 EQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDL 479
+ LG + D F + ++ Y E
Sbjct: 311 KDLGFVPDA-----------------------------------FTFSILFDGYSSNEKA 335
Query: 480 GSAEGTFQTLAKTGLP-DAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSV 538
+A G ++T +G+ +A +C+ +LN K EKA+ + + +E +Y ++
Sbjct: 336 EAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTM 395
Query: 539 MKIYCKEGMVTDAEQFVEEMGKNGSLKD----SKFIQTFCKILHGGCTENAEFGDKFVAS 594
+ YC++G + A +E M K G D + I+ FC++ G ENAE
Sbjct: 396 IDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCEL---GEMENAE-----KEV 447
Query: 595 NQLDLMAL-------GLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDGM 647
N++ L + +++ Y F K ILK + +VVS
Sbjct: 448 NKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSY---------- 497
Query: 648 RLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFK-AATVSCKPGKLVLRSMIDA 706
+LI K KL EAQ V + P + +ID
Sbjct: 498 -------------------GTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDG 538
Query: 707 YAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLD 766
GK ED + KE +G L+ V + L++ L+ GK +AE ++ + L D
Sbjct: 539 CCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPD 598
Query: 767 TVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMN 826
YN+ I AG + ++YE M + G+ K Y
Sbjct: 599 VFTYNSLISGYGFAGNVQRCIALYEEM-------------------KRSGIKPTLKTYHL 639
Query: 827 LVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDG 886
L+S K G LF EM +KP L+ YN +++ YA G + L + M
Sbjct: 640 LISLCTKEG-IELTERLFGEMS---LKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKS 695
Query: 887 FSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEAT 946
+ TY SL+ + K E I+ M + + P N ++ + A
Sbjct: 696 IGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMSAY 755
Query: 947 RVYNESLAAGIIPDLACYRTMLKG 970
Y E G + D+ ++ G
Sbjct: 756 VWYREMQEKGFLLDVCIGNELVSG 779
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 144/648 (22%), Positives = 258/648 (39%), Gaps = 88/648 (13%)
Query: 251 PSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKT 310
PS A + ++ L K+ + ++L ++++D GV+P F Y +I S KG EA
Sbjct: 330 PSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELL 389
Query: 311 FNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYK 370
F+ M G P +VTYS LI + + GK D ALS +M GL S Y SL++ + K
Sbjct: 390 FDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCK 449
Query: 371 NENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKT 430
+ S A +EM K+ V Y L+ Y G A + + E G+ T
Sbjct: 450 FGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYT 509
Query: 431 YLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLA 490
+ + + + A+ + M N+ +R Y VM++ Y + D+ A + +
Sbjct: 510 FTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMT 569
Query: 491 KTGL-PDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVT 549
+ G+ PD S +++ +AK F+ + K + +E Y ++ +C+EG +
Sbjct: 570 EKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLE 629
Query: 550 DAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLY 609
+A +EM + G LDL+ G+++
Sbjct: 630 EALSVCQEMVQRGV--------------------------------DLDLVCYGVLI--- 654
Query: 610 LTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDGMRLTFKFLMKL---GYILDDEVT 666
D + +++ +L F L ++ G DD +
Sbjct: 655 --DGSLKHKDR---------------------------KLFFGLLKEMHDRGLKPDDVIY 685
Query: 667 ASLIGSYGKHQKLKEAQDVFK-AATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATA 725
S+I + K KEA ++ C P ++ ++I+ K G + +L +
Sbjct: 686 TSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQP 745
Query: 726 QGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHF 785
+ V ++ LT Q + +HN+ L +T YN I+ G++
Sbjct: 746 VSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEE 805
Query: 786 AASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFS 845
A+ + RM+ G+S D Y +++ + +A L++
Sbjct: 806 ASELITRMI-------------------GDGVSPDCITYTTMINELCRRNDVKKAIELWN 846
Query: 846 EMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFT 893
M E+GI+P ++YN +I+ AG + +L M R G PN+ T
Sbjct: 847 SMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKT 894
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 149 bits (377), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 154/720 (21%), Positives = 292/720 (40%), Gaps = 92/720 (12%)
Query: 181 PCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTML---CTYARWGNHKAM 237
P + Y IL+ + G++ L +++ G D IA +L C R + AM
Sbjct: 85 PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSD--AM 142
Query: 238 LTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDK---GVAPTDFTYTLV 294
+ E G +P+ +N +L L ++ ++ ++L M D G P +YT V
Sbjct: 143 DIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTV 202
Query: 295 ISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGL 354
I+ F K ++A T++EM G P+ VTY+ +I+ K D+A+ + M G+
Sbjct: 203 INGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGV 262
Query: 355 IPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQK 414
+P T S+L Y + +A+ +M V D V Y LL+ K G +A+K
Sbjct: 263 MPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARK 322
Query: 415 TFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYV 474
F + GL + TY + Q + T + + +++LM + + + +++ Y
Sbjct: 323 IFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYA 382
Query: 475 MKEDLGSAEGTFQTLAKTGL-PDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEE 533
+ + A F + + GL P+A +
Sbjct: 383 KQGKVDQAMLVFSKMRQQGLNPNAVT---------------------------------- 408
Query: 534 LYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENA-EFGDKFV 592
Y +V+ I CK G V DA + E+M G L + + ++HG CT N E ++ +
Sbjct: 409 -YGAVIGILCKSGRVEDAMLYFEQMIDEG-LSPGNIV--YNSLIHGLCTCNKWERAEELI 464
Query: 593 ASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDGMRLTFK 652
L+++ G+ L+ + H G + S+ + F+
Sbjct: 465 ----LEMLDRGICLNTIFFNSIIDS---------HCKEGRVIESEKL-----------FE 500
Query: 653 FLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKA-ATVSCKPGKLVLRSMIDAYAKCG 711
++++G + +LI Y K+ EA + +V KP + ++I+ Y K
Sbjct: 501 LMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKIS 560
Query: 712 KAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYN 771
+ ED +L+KE + G + D + +I++ L + A+ + + ++ YN
Sbjct: 561 RMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYN 620
Query: 772 TCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFY 831
+ + + + D AL+MF + L L+ + + ++
Sbjct: 621 IILHGLC-------------------KNKLTDDALQMFQNLCLMDLKLEARTFNIMIDAL 661
Query: 832 GKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNS 891
K G+ EA LF G+ P +Y ++ GL E+++L +M+ +G + +S
Sbjct: 662 LKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDS 721
|
Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1041 | ||||||
| 225454795 | 1071 | PREDICTED: pentatricopeptide repeat-cont | 0.990 | 0.962 | 0.658 | 0.0 | |
| 255557995 | 1040 | pentatricopeptide repeat-containing prot | 0.941 | 0.942 | 0.636 | 0.0 | |
| 224144700 | 1071 | predicted protein [Populus trichocarpa] | 0.974 | 0.946 | 0.649 | 0.0 | |
| 297737325 | 1005 | unnamed protein product [Vitis vinifera] | 0.926 | 0.960 | 0.632 | 0.0 | |
| 449444598 | 1062 | PREDICTED: pentatricopeptide repeat-cont | 0.987 | 0.967 | 0.615 | 0.0 | |
| 356528278 | 1079 | PREDICTED: pentatricopeptide repeat-cont | 0.966 | 0.932 | 0.624 | 0.0 | |
| 15240478 | 1038 | pentatricopeptide repeat-containing prot | 0.967 | 0.970 | 0.578 | 0.0 | |
| 297813013 | 1027 | pentatricopeptide repeat-containing prot | 0.957 | 0.970 | 0.568 | 0.0 | |
| 55295905 | 1013 | pentatricopeptide (PPR) repeat-containin | 0.897 | 0.922 | 0.511 | 0.0 | |
| 218197431 | 1013 | hypothetical protein OsI_21342 [Oryza sa | 0.897 | 0.922 | 0.511 | 0.0 |
| >gi|225454795|ref|XP_002274101.1| PREDICTED: pentatricopeptide repeat-containing protein At5g27270-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1425 bits (3689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 707/1073 (65%), Positives = 837/1073 (78%), Gaps = 42/1073 (3%)
Query: 1 MDSLSSTFIATTTHFQFQH-------WNPKPPKKNSKISLKSRVRPDPWSLSDGSDITKP 53
++ L ++FI TT + NPK P+ + + V PDPWSLS G+ +P
Sbjct: 5 IEPLKTSFICTTPPLPLKPSKNLKSCQNPKKPRN---LIIHCSVHPDPWSLSTGN---RP 58
Query: 54 KPRSKNRKRPLSDDNARRILKAKAQYLSVLRRNQGPTAATPKWIKRTPEQMVKYLEDDRN 113
KP SKN K PLSDDNARRI+K KA+YLSVLRRNQGP A TPKWIKRTPEQMV+YL+DDRN
Sbjct: 59 KPISKNPKNPLSDDNARRIIKGKARYLSVLRRNQGPQAQTPKWIKRTPEQMVQYLQDDRN 118
Query: 114 GHLYGKHVVAAIKAVRAM----DGSRNVRVVMGSFVGKLSFREMCVVLKEQKGWRQATEF 169
GHLYGKHVVAAI+ VR++ DGS N+R VMGSFV KLSFREMCVVLKEQ+GWRQA +F
Sbjct: 119 GHLYGKHVVAAIRIVRSLAARPDGSYNMREVMGSFVAKLSFREMCVVLKEQRGWRQARDF 178
Query: 170 FAWMKLQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYA 229
F WMKLQLSY+P V+ YTILLR+YGQVGKIKLAEQ FLEMLEAGCEPDE+ACGTMLCTYA
Sbjct: 179 FGWMKLQLSYQPSVIVYTILLRVYGQVGKIKLAEQAFLEMLEAGCEPDEVACGTMLCTYA 238
Query: 230 RWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDF 289
RWG HKAML+FYSAV+ERGI+PS AVFNFMLSSL KKS H KVIDLWR+M+DKGV P F
Sbjct: 239 RWGRHKAMLSFYSAVQERGIIPSIAVFNFMLSSLQKKSLHGKVIDLWREMVDKGVVPNSF 298
Query: 290 TYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDM 349
TYT+VISS VK L+EE+ KTF EMK+ GF PEEVTYS LISLS K G DEA+ LY+DM
Sbjct: 299 TYTVVISSLVKDGLVEESFKTFYEMKNLGFVPEEVTYSLLISLSSKTGNRDEAIKLYEDM 358
Query: 350 RSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLY 409
R R ++PSNYTCASLL+LYYKN +YS+A+SLFSEMEK K+ ADEVIYGLLIRIYGKLGLY
Sbjct: 359 RYRRIVPSNYTCASLLTLYYKNGDYSRAVSLFSEMEKNKIVADEVIYGLLIRIYGKLGLY 418
Query: 410 EDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVM 469
EDA+KTF ETEQLGLL++EKTY+AMAQVHL S N EKAL ++ELM+SRN+W SRF+YIV+
Sbjct: 419 EDAEKTFKETEQLGLLTNEKTYIAMAQVHLNSGNFEKALTIMELMRSRNIWFSRFSYIVL 478
Query: 470 LQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVD 529
LQCYVMKEDL SAE TFQ L+KTGLPDAGSCNDMLNLYIKLDL EKAK FI IRKD V+
Sbjct: 479 LQCYVMKEDLASAEATFQALSKTGLPDAGSCNDMLNLYIKLDLLEKAKDFIFQIRKDPVE 538
Query: 530 FDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGD 589
FD EL ++VMK+YCK+GM+ DA+Q ++EMG NG KDS+FIQT ++H D
Sbjct: 539 FDMELCKTVMKVYCKKGMLRDAKQLIQEMGTNGLFKDSEFIQTLSLVMHEESERPDYVDD 598
Query: 590 KFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDG--- 646
A NQ + +AL LML LY N K E+ILK+LL TAGG SV S LI KF R+G
Sbjct: 599 TVEALNQNNTLALELMLGLYSEVGNACKVEEILKMLLKTAGGLSVASHLISKFTREGDIS 658
Query: 647 --MRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMI 704
L + L+KLG +D ASLI YGK KLK+A +VF +A C GKL+ SMI
Sbjct: 659 KAQNLNDQ-LVKLGRGAEDASIASLITLYGKQHKLKKAIEVF-SAIEGCTSGKLIYISMI 716
Query: 705 DAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLD 764
DAYAKCGKAE+ Y LY+E T +G L V+IS +V+ L N+GKH++AE +I SF+D L+
Sbjct: 717 DAYAKCGKAEEAYHLYEEVTGKGIELGVVSISKVVHALANYGKHQEAENVIRRSFEDGLE 776
Query: 765 LDTVAYNTCIKAMLGAGKLHFAASIYERML----------------VYGRGRKLDKALEM 808
LDTVAYNT I AMLGAG+LHFA SIY+RM+ VYGRGRKLDKA+EM
Sbjct: 777 LDTVAYNTFINAMLGAGRLHFANSIYDRMVSLGVAPSIQTYNTMISVYGRGRKLDKAVEM 836
Query: 809 FNTAR--SLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVY 866
FN AR +G+SLDEK Y NL+S+YGKAGK+HEASLLF EMQEEGIKPG +SYNI+INVY
Sbjct: 837 FNKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEEGIKPGKVSYNIMINVY 896
Query: 867 AAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSC 926
A AGL++E ++L QAM RDG SP+S TYL+L++AYT++ K+ EAEETI SMQ +G+ PSC
Sbjct: 897 ATAGLHHEAQELFQAMLRDGCSPDSLTYLALIRAYTQSFKFLEAEETIMSMQNEGVLPSC 956
Query: 927 THVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEE 986
H N LLSAF+KAG EA RVY+ L+AG+ PD+ACYRTML+GY+D+G +E+GI FE+
Sbjct: 957 VHFNQLLSAFAKAGFTEEAERVYHTLLSAGLSPDVACYRTMLRGYLDYGCVEKGITFFEQ 1016
Query: 987 VRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRIPFMKNLEVGSKIK 1039
+RES E D+FIMS+AVH Y+ AGKE EA ILDSM S+ IPF+KNLEVGSK K
Sbjct: 1017 IRESVEPDRFIMSSAVHFYKLAGKELEAEGILDSMKSLGIPFLKNLEVGSKTK 1069
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255557995|ref|XP_002520026.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223540790|gb|EEF42350.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1365 bits (3533), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 674/1059 (63%), Positives = 812/1059 (76%), Gaps = 79/1059 (7%)
Query: 4 LSSTFIATTTHFQFQHWNPKPPKKNSKISLKSRVRPDPWSLSDGSDITKPKPRSKNRKRP 63
L STF+ + + + + K K NSK+++KS + DPWSLSDG+DI+KPKPRS+N K+P
Sbjct: 6 LKSTFLPPLPNRKPK--SQKASKANSKMTIKSSIHSDPWSLSDGNDISKPKPRSRNPKKP 63
Query: 64 LSDDNARRILKAKAQYLSVLRRNQGPTAATPKWIKRTPEQMVKYLEDDRNGHLYGKHVVA 123
LSDDNARRI+KAKAQYLS+LR+++GP TPKWIKRTPEQMVKYLEDDRNGHLYGKHVVA
Sbjct: 64 LSDDNARRIIKAKAQYLSLLRKHKGPHVQTPKWIKRTPEQMVKYLEDDRNGHLYGKHVVA 123
Query: 124 AIKAVRAMDG----SRNVRVVMGSFVGKLSFREMCVVLKEQKGWRQATEFFAWMKLQLSY 179
AIK VR + G RNVR+VM FVGKLSFREMCVVLKEQKGWR+A +FF WMKLQ+ Y
Sbjct: 124 AIKTVRGLAGKREEERNVRLVMSGFVGKLSFREMCVVLKEQKGWREARDFFYWMKLQICY 183
Query: 180 RPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLT 239
P V+ YTI+LR YGQVGKIKLAEQTFLEMLEAGCEPDE+ACGTMLC+YARWG HKAM +
Sbjct: 184 HPSVIVYTIVLRTYGQVGKIKLAEQTFLEMLEAGCEPDEVACGTMLCSYARWGRHKAMFS 243
Query: 240 FYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFV 299
FYSA++ERGI S +V+NFMLSSL KKS H +VI+LWRQM+DK VAP FTYT+VISS V
Sbjct: 244 FYSAIRERGITLSVSVYNFMLSSLQKKSLHGRVIELWRQMVDKAVAPNTFTYTVVISSLV 303
Query: 300 KGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNY 359
K L EEA K FNEMK+TG PEEVTYS LI+++ K G DEA LY+D+ S GL+PSN+
Sbjct: 304 KEGLHEEAFKVFNEMKNTGHVPEEVTYSLLITVNTKKGNWDEAGRLYEDLISHGLVPSNF 363
Query: 360 TCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAET 419
TCASLL++YYKN ++SKALSLF EM+ K+AADEVIYGLLIRIYGKLGLY+DAQKTF ET
Sbjct: 364 TCASLLTMYYKNGDFSKALSLFMEMQSKKIAADEVIYGLLIRIYGKLGLYDDAQKTFEET 423
Query: 420 EQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDL 479
EQLGLLSDEKTYLAMAQVHL S N EKAL VIE+MKSRN+WLSRFAYIV+LQCYVMKEDL
Sbjct: 424 EQLGLLSDEKTYLAMAQVHLNSGNSEKALSVIEVMKSRNIWLSRFAYIVLLQCYVMKEDL 483
Query: 480 GSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVM 539
AE T+Q L+KTGLPDAGSCNDMLNLY++LDLTEKAK F IRKDQVDFDEELY++V
Sbjct: 484 DCAEATYQALSKTGLPDAGSCNDMLNLYLRLDLTEKAKTFFIQIRKDQVDFDEELYKTVT 543
Query: 540 KIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDL 599
K+ CKEGM++D EQ EE+G N SLKD K I++ + +GG
Sbjct: 544 KVLCKEGMLSDVEQLTEEVGTNESLKD-KIIRSLL-VTYGGL------------------ 583
Query: 600 MALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDG----MRLTFKFLM 655
S V+QL+ IR+G + +
Sbjct: 584 ---------------------------------STVNQLVTNSIREGDVCKAEMINAQVT 610
Query: 656 KLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAED 715
LG L+++V ASLI Y K QKLK+AQ+VF A S GK ++ SMIDAYAKCGK+ED
Sbjct: 611 MLGGRLENDVIASLISLYAKQQKLKQAQEVFAAVADSPVCGKPIVNSMIDAYAKCGKSED 670
Query: 716 VYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIK 775
Y LY+E T +G L AV +SI+V L+N GKH++AE I+ S ++N+DLDTVAYN IK
Sbjct: 671 AYSLYREVTDRGLNLGAVGVSIIVKALSNRGKHQEAENIVRKSIRENMDLDTVAYNIFIK 730
Query: 776 AMLGAGKLHFAASIYERML----------------VYGRGRKLDKALEMFNTARSLGLSL 819
AML AG+LHFAASIYE ML VYGRG KLDKA+E+FNTA S G+SL
Sbjct: 731 AMLEAGRLHFAASIYEHMLSLGVTPSIQTYNTMISVYGRGEKLDKAVEIFNTACSSGVSL 790
Query: 820 DEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLI 879
DEKAYMN+VS+YGKAGK +EASLLF++MQEEGIKPG +SYNI+I V+A AGLY+E ++L
Sbjct: 791 DEKAYMNMVSYYGKAGKRNEASLLFTKMQEEGIKPGKVSYNIMIKVFAIAGLYHEAKELF 850
Query: 880 QAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKA 939
AMQRDG+ P+SFTYLSLVQAYTE+ KYSEAEETI+ M K+G+ PSC+H NHLLSA++KA
Sbjct: 851 HAMQRDGWPPDSFTYLSLVQAYTESLKYSEAEETIDGMPKKGVLPSCSHFNHLLSAYAKA 910
Query: 940 GLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMS 999
GLM EA RVY + L +G+ PDLACYR ML+GY+D+G +E+GIN FE++++ +ESD+FIMS
Sbjct: 911 GLMVEAERVYKKLLTSGLSPDLACYRAMLRGYLDYGQVEKGINFFEQIKKYAESDRFIMS 970
Query: 1000 AAVHLYRYAGKEHEANDILDSMNSVRIPFMKNLEVGSKI 1038
AAVHLY++AGKE A +L SMN+++I F+ NL+VGSKI
Sbjct: 971 AAVHLYKFAGKEPMAEVLLGSMNNLKISFLHNLQVGSKI 1009
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224144700|ref|XP_002325381.1| predicted protein [Populus trichocarpa] gi|222862256|gb|EEE99762.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1360 bits (3520), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 679/1046 (64%), Positives = 825/1046 (78%), Gaps = 32/1046 (3%)
Query: 22 PKPPKKN-SKISLKSRVRPDPWSLSDGSDITKPKPRSKNRKRPLSDDNARRILKAKAQYL 80
PKP N +K+ +KS + PDPWSLSDG++I+KPKP+SKN K PLSDDNARR++ A+A+YL
Sbjct: 21 PKPKSINPNKVPIKSSIHPDPWSLSDGNNISKPKPKSKNPKNPLSDDNARRMIIARARYL 80
Query: 81 SVLRRNQGPTAATPKWIKRTPEQMVKYLEDDRNGHLYGKHVVAAIKAVRAMDGSRN---- 136
S+LR++QGP A TPKWIKRTPEQMV YLEDDRNGHLYGKHVVAAIK VR + G +N
Sbjct: 81 SLLRKHQGPQAQTPKWIKRTPEQMVMYLEDDRNGHLYGKHVVAAIKRVRGLAGKKNEERD 140
Query: 137 VRVVMGSFVGKLSFREMCVVLKEQKGWRQATEFFAWMKLQLSYRPCVVAYTILLRLYGQV 196
+R++M FVGKLSFREMCVVLKEQKGWR+A +FF+WMKLQLSY P V+ YTILLR+YGQV
Sbjct: 141 MRLLMSGFVGKLSFREMCVVLKEQKGWREARDFFSWMKLQLSYHPSVIVYTILLRIYGQV 200
Query: 197 GKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVF 256
GKIKLAEQTFLEMLE GCEPDE+ACGTMLC+YARWG+HKAM +FYSA+KERGIV S AV+
Sbjct: 201 GKIKLAEQTFLEMLEVGCEPDEVACGTMLCSYARWGHHKAMFSFYSAIKERGIVVSIAVY 260
Query: 257 NFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKS 316
NFMLSSL KKS H KVI LWRQM+DK VAP +FTYT+VISS VK L +EA KTFNEM++
Sbjct: 261 NFMLSSLQKKSLHGKVIVLWRQMVDKRVAPNNFTYTVVISSLVKEGLHKEAFKTFNEMRT 320
Query: 317 TGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSK 376
G PEEV YS LI++S K+ EAL LY+DMRS ++PS +TCASLL++YYK ++YSK
Sbjct: 321 MGLVPEEVIYSLLITVSTKNSNWHEALKLYEDMRSHRIVPSKFTCASLLTMYYKIKDYSK 380
Query: 377 ALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQ 436
ALSLF +M+ +AADEVIYGLLIRIYGKLGLYEDAQKTF ETE+ GLLS+EKTYLAMAQ
Sbjct: 381 ALSLFIQMQSKNIAADEVIYGLLIRIYGKLGLYEDAQKTFEETERSGLLSNEKTYLAMAQ 440
Query: 437 VHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPD 496
VHL+S N EKAL VIE+MKSRN+WLSRFAYIV+LQCY MKEDL SAE TFQ L+K G PD
Sbjct: 441 VHLSSGNFEKALSVIEVMKSRNIWLSRFAYIVLLQCYCMKEDLDSAEVTFQALSKIGCPD 500
Query: 497 AGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVE 556
AGSC+DM+NLY++L TEKAK FI HIRK VDFDEEL+ +V+K++CKEGM+ DAEQ V
Sbjct: 501 AGSCSDMINLYVRLGFTEKAKDFIVHIRKYLVDFDEELFNTVIKVFCKEGMLKDAEQLVY 560
Query: 557 EMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFS 616
EMG N S KD++F +TF +++G EN E + V++ D ALGL+LSLYL + NF+
Sbjct: 561 EMGTNASFKDNRFFKTFSNVMYG---ENKELENIMVSA---DTTALGLILSLYLENGNFT 614
Query: 617 KREKILKLLLHTAGGSSVVSQLICKFIRDGMRLTFKF----LMKLGYILDDEVTASLIGS 672
K E+ LKL+L G SVVSQL+ FIR+G + L+KLG L+DE ASLI +
Sbjct: 615 KTEEFLKLILEAGSGLSVVSQLVNSFIREGDLFKAEAVNGQLIKLGSKLEDETIASLISA 674
Query: 673 YGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDA 732
YG+ KLK+AQ+VF A S G ++ SMIDA KCGK E+ YLLY+E +G L A
Sbjct: 675 YGRQNKLKQAQEVFAAVADSPILGNPIINSMIDACVKCGKFEEAYLLYEEVAQRGHNLGA 734
Query: 733 VAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYER 792
V I ++VN LTN GKH +AE II S QD ++LDTVAYN IKAML AG+LHFA SIYE
Sbjct: 735 VGIGMVVNALTNSGKHPEAENIIRRSIQDRMELDTVAYNIFIKAMLEAGRLHFATSIYEH 794
Query: 793 ML----------------VYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGK 836
ML VYGRGRKLDKA+E+FNTA S G+SLDEKAYMN++++YGKAGK
Sbjct: 795 MLLLGFTPSIQTYNTMISVYGRGRKLDKAVEVFNTACSSGVSLDEKAYMNMINYYGKAGK 854
Query: 837 THEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLS 896
HEASLLF++MQEEGIKPG++SYN++ VYA +GLY+EVE+L + M+RDG P+SFTYLS
Sbjct: 855 RHEASLLFAKMQEEGIKPGVVSYNVMAKVYAMSGLYHEVEELFKVMERDGCPPDSFTYLS 914
Query: 897 LVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAG 956
LVQAY+E++K EAEETIN+MQK+GIPPSC H HLL A KAGLM EA RVY E L+AG
Sbjct: 915 LVQAYSESSKCLEAEETINAMQKKGIPPSCAHFKHLLYALVKAGLMVEAERVYMELLSAG 974
Query: 957 IIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEAND 1016
+ PDL C R ML+GYMD+G++E+GI +E++RE ++D+FIMSAAVHLY+ AGK+ EA
Sbjct: 975 LNPDLVCCRAMLRGYMDYGHVEKGIKFYEQIRELVKADRFIMSAAVHLYKSAGKKLEAEV 1034
Query: 1017 ILDSMNSVRIPFMKNLEVGSKIK-PS 1041
+ +SM S+RI F+ LEVG KI+ PS
Sbjct: 1035 LFESMKSLRISFLNELEVGLKIQCPS 1060
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297737325|emb|CBI26526.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1337 bits (3461), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 679/1073 (63%), Positives = 801/1073 (74%), Gaps = 108/1073 (10%)
Query: 1 MDSLSSTFIATTTHFQFQH-------WNPKPPKKNSKISLKSRVRPDPWSLSDGSDITKP 53
++ L ++FI TT + NPK P+ + + V PDPWSLS G+ +P
Sbjct: 5 IEPLKTSFICTTPPLPLKPSKNLKSCQNPKKPRN---LIIHCSVHPDPWSLSTGN---RP 58
Query: 54 KPRSKNRKRPLSDDNARRILKAKAQYLSVLRRNQGPTAATPKWIKRTPEQMVKYLEDDRN 113
KP SKN K PLSDDNARRI+K KA+YLSVLRRNQGP A TPKWIKRTPEQMV+YL+DDRN
Sbjct: 59 KPISKNPKNPLSDDNARRIIKGKARYLSVLRRNQGPQAQTPKWIKRTPEQMVQYLQDDRN 118
Query: 114 GHLYGKHVVAAIKAVRAM----DGSRNVRVVMGSFVGKLSFREMCVVLKEQKGWRQATEF 169
GHLYGKHVVAAI+ VR++ DGS N+R VMGSFV KLSFREMCVVLKEQ+GWRQA +F
Sbjct: 119 GHLYGKHVVAAIRIVRSLAARPDGSYNMREVMGSFVAKLSFREMCVVLKEQRGWRQARDF 178
Query: 170 FAWMKLQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYA 229
F WMKLQLSY+P V+ YTILLR+YGQVGKIKLAEQ FLEMLEAGCEPDE+ACGTMLCTYA
Sbjct: 179 FGWMKLQLSYQPSVIVYTILLRVYGQVGKIKLAEQAFLEMLEAGCEPDEVACGTMLCTYA 238
Query: 230 RWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDF 289
RWG HKAML+FYSAV+ERGI+PS AVFNFMLSSL KKS H KVID
Sbjct: 239 RWGRHKAMLSFYSAVQERGIIPSIAVFNFMLSSLQKKSLHGKVIDF-------------- 284
Query: 290 TYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDM 349
S VK L+EE+ KTF EMK+ GF PEEVTYS LISLS K G DEA+ LY+DM
Sbjct: 285 -------SLVKDGLVEESFKTFYEMKNLGFVPEEVTYSLLISLSSKTGNRDEAIKLYEDM 337
Query: 350 RSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLY 409
R R ++PSNYTCASLL+LYYKN +YS+A+SLFSEMEK K+ ADEVIYGLLIRIYGKLGLY
Sbjct: 338 RYRRIVPSNYTCASLLTLYYKNGDYSRAVSLFSEMEKNKIVADEVIYGLLIRIYGKLGLY 397
Query: 410 EDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVM 469
EDA+KTF ETEQLGLL++EKTY+AMAQVHL S N EKAL ++ELM+SRN+W SRF+YIV+
Sbjct: 398 EDAEKTFKETEQLGLLTNEKTYIAMAQVHLNSGNFEKALTIMELMRSRNIWFSRFSYIVL 457
Query: 470 LQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVD 529
LQCYVMKEDL SAE TFQ L+KTGLPDAGSCNDMLNLYIKLDL EKAK FI IRKD V+
Sbjct: 458 LQCYVMKEDLASAEATFQALSKTGLPDAGSCNDMLNLYIKLDLLEKAKDFIFQIRKDPVE 517
Query: 530 FDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGD 589
FD EL ++VMK+YCK+GM+ DA+Q ++EMG NG KDS+FIQT
Sbjct: 518 FDMELCKTVMKVYCKKGMLRDAKQLIQEMGTNGLFKDSEFIQT----------------- 560
Query: 590 KFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDG--- 646
LSL ILK+LL TAGG SV S LI KF R+G
Sbjct: 561 ----------------LSL------------ILKMLLKTAGGLSVASHLISKFTREGDIS 592
Query: 647 --MRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMI 704
L + L+KLG +D ASLI YGK KLK+A +VF +A C GKL+ SMI
Sbjct: 593 KAQNLNDQ-LVKLGRGAEDASIASLITLYGKQHKLKKAIEVF-SAIEGCTSGKLIYISMI 650
Query: 705 DAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLD 764
DAYAKCGKAE+ Y LY+E T +G L V+IS +V+ L N+GKH++AE +I SF+D L+
Sbjct: 651 DAYAKCGKAEEAYHLYEEVTGKGIELGVVSISKVVHALANYGKHQEAENVIRRSFEDGLE 710
Query: 765 LDTVAYNTCIKAMLGAGKLHFAASIYERML----------------VYGRGRKLDKALEM 808
LDTVAYNT I AMLGAG+LHFA SIY+RM+ VYGRGRKLDKA+EM
Sbjct: 711 LDTVAYNTFINAMLGAGRLHFANSIYDRMVSLGVAPSIQTYNTMISVYGRGRKLDKAVEM 770
Query: 809 FNTAR--SLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVY 866
FN AR +G+SLDEK Y NL+S+YGKAGK+HEASLLF EMQEEGIKPG +SYNI+INVY
Sbjct: 771 FNKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEEGIKPGKVSYNIMINVY 830
Query: 867 AAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSC 926
A AGL++E ++L QAM RDG SP+S TYL+L++AYT++ K+ EAEETI SMQ +G+ PSC
Sbjct: 831 ATAGLHHEAQELFQAMLRDGCSPDSLTYLALIRAYTQSFKFLEAEETIMSMQNEGVLPSC 890
Query: 927 THVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEE 986
H N LLSAF+KAG EA RVY+ L+AG+ PD+ACYRTML+GY+D+G +E+GI FE+
Sbjct: 891 VHFNQLLSAFAKAGFTEEAERVYHTLLSAGLSPDVACYRTMLRGYLDYGCVEKGITFFEQ 950
Query: 987 VRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRIPFMKNLEVGSKIK 1039
+RES E D+FIMS+AVH Y+ AGKE EA ILDSM S+ IPF+KNLEVGSK K
Sbjct: 951 IRESVEPDRFIMSSAVHFYKLAGKELEAEGILDSMKSLGIPFLKNLEVGSKTK 1003
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444598|ref|XP_004140061.1| PREDICTED: pentatricopeptide repeat-containing protein At5g27270-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1311 bits (3393), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 662/1075 (61%), Positives = 803/1075 (74%), Gaps = 47/1075 (4%)
Query: 1 MDSLSSTFIATTTHFQFQHWNPKPPKKNSKISLKSR----------VRPDPWSLSDGSDI 50
M+SL ++F++ P P + ++ LKSR V PDPWSLSDG+
Sbjct: 1 MESLKTSFLSPILL-------PPPFIRTTRSPLKSRNAQIFIIRLSVTPDPWSLSDGNP- 52
Query: 51 TKPKPRSKNRKRPLSDDNARRILKAKAQYLSVLRRNQGPTAATPKWIKRTPEQMVKYLED 110
+PKPRSKN K+PLSDDNARRI+KAKAQYLSVLRRNQGP A TPKWIKRTPEQMV+YLED
Sbjct: 53 ARPKPRSKNAKKPLSDDNARRIIKAKAQYLSVLRRNQGPRAQTPKWIKRTPEQMVQYLED 112
Query: 111 DRNGHLYGKHVVAAIKAVRAM----DGSRNVRVVMGSFVGKLSFREMCVVLKEQKGWRQA 166
DRNGHLYGKHVVAAI+ VR++ +G N+R+ M SFV KL+FREMC+VLKEQKGWRQ
Sbjct: 113 DRNGHLYGKHVVAAIRHVRSLSQKTEGEYNMRMEMASFVEKLTFREMCIVLKEQKGWRQV 172
Query: 167 TEFFAWMKLQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLC 226
+ F WMKLQLSYRP V+ YTI+LR YGQVGKIKLAE+TFLEMLE G EPDE+ACGTMLC
Sbjct: 173 RDVFDWMKLQLSYRPSVIVYTIVLRAYGQVGKIKLAEETFLEMLEVGLEPDEVACGTMLC 232
Query: 227 TYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAP 286
TYARWG+HK ML+FYSAVK+RGIVP AVFNFMLSSL KK H KV +LW QM++ GV
Sbjct: 233 TYARWGHHKTMLSFYSAVKDRGIVPPIAVFNFMLSSLQKKGLHAKVKELWMQMVEIGVTF 292
Query: 287 TDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLY 346
+DFTYT+VI+S VK EEA K FNEMK+ GF PEEVTY+ LISLSIK SDE L LY
Sbjct: 293 SDFTYTVVINSLVKEGHSEEAFKVFNEMKNCGFIPEEVTYNLLISLSIKRENSDEVLRLY 352
Query: 347 KDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKL 406
KDMR + ++PSNYTC+SLL+L+YKN +YSKALSLFSEME KV DEVIYGLLIRIYGKL
Sbjct: 353 KDMRDKDIVPSNYTCSSLLTLFYKNGDYSKALSLFSEMESKKVVVDEVIYGLLIRIYGKL 412
Query: 407 GLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAY 466
GLYEDA KTF E EQLGLL+DEK+YLAMAQVHL SRN EKALD+IELMKSRN+WLSRFAY
Sbjct: 413 GLYEDAHKTFEEMEQLGLLTDEKSYLAMAQVHLNSRNFEKALDIIELMKSRNIWLSRFAY 472
Query: 467 IVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKD 526
IV LQCYVMKED+ SAE TFQ L+KTGLPDA SC +LNLY+KLDL KAK FIAHIRKD
Sbjct: 473 IVSLQCYVMKEDIRSAESTFQALSKTGLPDARSCIYILNLYLKLDLVNKAKDFIAHIRKD 532
Query: 527 QVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAE 586
V FDEELY+ V+++YCKEG+ DAE +E M K+ D+KF++TF + E E
Sbjct: 533 GVVFDEELYKLVLRVYCKEGLSEDAEILIELMKKDELFVDNKFMETFSFMFKLDGGEKNE 592
Query: 587 FGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDG 646
V +Q D +AL ++L LYL + + SKR KILK ++ GG +VVSQL+ IR+G
Sbjct: 593 --STIVGYDQPDHIALDMILRLYLANGDVSKRNKILKFII-GKGGVTVVSQLVANLIREG 649
Query: 647 MRLT----FKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRS 702
L K L+KL LDD + ASLI YGK +K+ +A +V A SC L+ S
Sbjct: 650 DSLKAGTLTKELLKLDCRLDDAIIASLISLYGKERKINQAAEVLAAVANSC-TSTLIFGS 708
Query: 703 MIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDN 762
MIDAY KC KAE+ LYKE +G L AVA+S +VNTLT GKH AE ++ S
Sbjct: 709 MIDAYIKCDKAEEASTLYKELIEKGYDLGAVAVSRIVNTLTVGGKHRVAENVVRASLNCG 768
Query: 763 LDLDTVAYNTCIKAMLGAGKLHFAASIYERML----------------VYGRGRKLDKAL 806
L+LDTVA+NT IKAML GKLHFA+ IYE M+ VYGRGRKLDKA+
Sbjct: 769 LELDTVAFNTFIKAMLEGGKLHFASRIYEHMIALGIVPSIQTYNTMISVYGRGRKLDKAV 828
Query: 807 EMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVY 866
EMFN ARS GLS DEKAY NL+S YGKAGKTHEASLLF EM EEG+KPG++SYNI++NVY
Sbjct: 829 EMFNAARSSGLSPDEKAYTNLISCYGKAGKTHEASLLFKEMLEEGVKPGMVSYNIMVNVY 888
Query: 867 AAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSC 926
A AGL+ E E L++AM++D P+SFTY SL++AYT++ KYSEAE+ INSMQ++GIP +C
Sbjct: 889 ANAGLHEETENLLKAMEQDAIVPDSFTYFSLIRAYTQSCKYSEAEKIINSMQEKGIPTTC 948
Query: 927 THVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEE 986
H + LLSA +KAG++ +A RVY+E AG+ PD+ C RT+++GY+D+GY+ EGI FE
Sbjct: 949 AHYDLLLSALAKAGMIRKAERVYDELQTAGLSPDVTCNRTLMRGYLDYGYVREGIKFFES 1008
Query: 987 VRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRIPFMKNLEVGSKIKPS 1041
+ + D+FIMSAAVH Y+ GKE EA +ILDSM ++ + F+K+L++G K++ +
Sbjct: 1009 TCKYA-GDRFIMSAAVHFYKAEGKEDEALNILDSMKTLGLSFLKDLQIGLKLESA 1062
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528278|ref|XP_003532731.1| PREDICTED: pentatricopeptide repeat-containing protein At5g27270-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1307 bits (3383), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 653/1045 (62%), Positives = 799/1045 (76%), Gaps = 39/1045 (3%)
Query: 22 PKPPKKNSKISLKSRVRPDPWSLSDGSDITKPKPRSKNRKRPLSDDNARRILKAKAQYLS 81
P+ P I ++ ++ DPWS + G D T+PKPRS+N K+PLSDDNARRI+K KA Y S
Sbjct: 37 PRVP-----IFIRCTIQRDPWSPTSG-DPTRPKPRSRNPKKPLSDDNARRIIKGKAAYQS 90
Query: 82 VLRRNQGPTAATPKWIKRTPEQMVKYLEDDRNGHLYGKHVVAAIKAVRAM----DGSRNV 137
+LRRNQGP A TP+WIKRTPEQMV+YL+DDRNG LYG+HV+AA+K VR++ DG ++
Sbjct: 91 ILRRNQGPQAQTPRWIKRTPEQMVRYLQDDRNGQLYGRHVLAAVKKVRSLSQRVDGDYDM 150
Query: 138 RVVMGSFVGKLSFREMCVVLKEQKGWRQATEFFAWMKLQLSYRPCVVAYTILLRLYGQVG 197
R+VM SFVGKLSF+EMCVVLKEQKGWRQ +FFAWMKLQLSYRP V+ YTI+LRLYGQVG
Sbjct: 151 RMVMASFVGKLSFKEMCVVLKEQKGWRQVRDFFAWMKLQLSYRPSVIVYTIVLRLYGQVG 210
Query: 198 KIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFN 257
K+KLAE+ FLEML+ GCEPDE+ACGTMLC+YARWG HKAML+FYSA+KERGI+ S AVFN
Sbjct: 211 KLKLAEEIFLEMLDVGCEPDEVACGTMLCSYARWGRHKAMLSFYSAIKERGIILSVAVFN 270
Query: 258 FMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKST 317
FM+SSL KKS HR+V+ +W+ M+ KGV P +FTYT+ ISSFVK L E+A KTF+EM++
Sbjct: 271 FMMSSLQKKSLHREVVHVWKDMLGKGVIPNNFTYTVAISSFVKEGLHEDAFKTFDEMRNY 330
Query: 318 GFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKA 377
G PEE+TYS LI+L+ K G DE LY+DMR RG+IPSNYTCASLLSLYYK E+Y +A
Sbjct: 331 GVVPEELTYSLLINLNAKSGNRDEVQRLYEDMRFRGIIPSNYTCASLLSLYYKYEDYPRA 390
Query: 378 LSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQV 437
LSLFSEM + K++ DEVIYGLLIRIYGKLGLYEDA KTF ET+ G L+ EKTYLAMAQV
Sbjct: 391 LSLFSEMVRNKISTDEVIYGLLIRIYGKLGLYEDAHKTFEETKNRGQLTSEKTYLAMAQV 450
Query: 438 HLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDA 497
HLTS NV+KAL+VIELMKS N+W SRFAYIV+LQCYVMKED+ SAEGTF L+KTG PDA
Sbjct: 451 HLTSGNVDKALEVIELMKSSNLWFSRFAYIVLLQCYVMKEDVASAEGTFLALSKTGPPDA 510
Query: 498 GSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEE 557
GSCNDML+LY+ L+LT KAK FI IR+++ +FD+ELYR+VMK+YCKEGM+ +AEQ +
Sbjct: 511 GSCNDMLSLYMGLNLTNKAKEFIVQIRENETNFDKELYRTVMKVYCKEGMLPEAEQLTNQ 570
Query: 558 MGKNGSLKDSKFIQTFCKIL--HGGCTENAEFGDKFVASNQLD---LMALGLMLSLYLTD 612
M K K+ KF TF IL H G + E D+ VA +D ALGLMLSLYL +
Sbjct: 571 MVKTEYFKNDKFFMTFYWILCEHKG---DMESDDELVAIEPIDKFNATALGLMLSLYLAN 627
Query: 613 DNFSKREKILKLLL-HTAGGSSVVSQLICKFIRDG----MRLTFKFLMKLGYILDDEVTA 667
NF+K + +LKLLL + AGGS +VSQLI ++G L L KLG +D+ A
Sbjct: 628 GNFNKTKILLKLLLGYAAGGSKIVSQLIINLSKEGEISKAELLNHQLTKLGCRMDEATVA 687
Query: 668 SLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQG 727
SLI YGK Q LK+A+D+F S K++ SMI+AYAKCGK E YLLYK+AT +G
Sbjct: 688 SLISHYGKQQMLKQAEDIFAEYINSPTSSKVLYNSMINAYAKCGKQEKAYLLYKQATGEG 747
Query: 728 CALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAA 787
L AV ISI VN+LTN GKH++AE I+ S ++NL+LDTVAYNT IKAML AGKLHFA+
Sbjct: 748 RDLGAVGISIAVNSLTNGGKHQEAENIVQRSLEENLELDTVAYNTFIKAMLEAGKLHFAS 807
Query: 788 SIYERML----------------VYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFY 831
SI+E M+ VYG+ +KLD+A+EMFN A S + LDEK YMNL+ +Y
Sbjct: 808 SIFEHMISSGVAPSIETFNTMISVYGQDQKLDRAVEMFNQASSCSVPLDEKTYMNLIGYY 867
Query: 832 GKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNS 891
GKAG EAS LFS+MQE GIKPG +SYNI+INVYA AG+ +E EKL MQR G+ P+S
Sbjct: 868 GKAGLMLEASQLFSKMQEGGIKPGKVSYNIMINVYANAGVLHETEKLFHTMQRQGYLPDS 927
Query: 892 FTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNE 951
FTYLSLVQAYT + YS+AEETI++MQ +GIPPSC H N LL AF KAGL+ EA RVY +
Sbjct: 928 FTYLSLVQAYTRSLNYSKAEETIHAMQSKGIPPSCVHFNILLHAFIKAGLIHEAKRVYED 987
Query: 952 SLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKE 1011
G++PDL C+RTML GY+ GY+EEGIN FE + ES++SD+FIMSAAVH Y+ AGK
Sbjct: 988 LSTFGLVPDLVCHRTMLNGYLKCGYVEEGINFFESICESTKSDRFIMSAAVHFYKSAGKG 1047
Query: 1012 HEANDILDSMNSVRIPFMKNLEVGS 1036
+A +IL+ MN++ IPF+K LEVGS
Sbjct: 1048 RQAKEILNLMNNMGIPFLKKLEVGS 1072
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240478|ref|NP_198079.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|223635757|sp|O04647.2|PP399_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27270; AltName: Full=Protein EMBRYO DEFECTIVE 976 gi|332006282|gb|AED93665.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1196 bits (3095), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 602/1040 (57%), Positives = 768/1040 (73%), Gaps = 33/1040 (3%)
Query: 4 LSSTFIATTTHFQFQHWNPKPPKKNSKISLKSR-----VRPDPWSLSDGSDITKPKPRSK 58
+ S F+ +TTHF + PK P +NS+IS+KS VRPDPWSLSDG+ KPKPR +
Sbjct: 1 MKSDFLTSTTHFNPSIFLPKIPSRNSRISIKSSSSSSKVRPDPWSLSDGNP-EKPKPRYE 59
Query: 59 NRKRPLSDDNARRILKAKAQYLSVLRRNQGPTAATPKWIKRTPEQMVKYLEDDRNGHLYG 118
K PLSDD+ARRI+K KAQYLS LRRNQG A TPKWIKRTPEQMV+YLEDDRNG +YG
Sbjct: 60 RPKHPLSDDDARRIIKKKAQYLSTLRRNQGSQAMTPKWIKRTPEQMVQYLEDDRNGQMYG 119
Query: 119 KHVVAAIKAVRAM----DGSRNVRVVMGSFVGKLSFREMCVVLKEQKGWRQATEFFAWMK 174
KHVVAAIK VR + GS ++R VM SFV KLSFR+MCVVLKEQ+GWRQ +FF+WMK
Sbjct: 120 KHVVAAIKTVRGLSQRRQGSDDMRFVMSSFVAKLSFRDMCVVLKEQRGWRQVRDFFSWMK 179
Query: 175 LQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNH 234
LQLSYRP VV YTI+LRLYGQVGKIK+AE+TFLEMLE GCEPD +ACGTMLCTYARWG H
Sbjct: 180 LQLSYRPSVVVYTIVLRLYGQVGKIKMAEETFLEMLEVGCEPDAVACGTMLCTYARWGRH 239
Query: 235 KAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLV 294
AMLTFY AV+ER I+ ST+V+NFMLSSL KKS+H KVIDLW +M+++GV P +FTYTLV
Sbjct: 240 SAMLTFYKAVQERRILLSTSVYNFMLSSLQKKSFHGKVIDLWLEMVEEGVPPNEFTYTLV 299
Query: 295 ISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGL 354
+SS+ K EEALK F EMKS GF PEEVTYS +ISLS+K G ++A+ LY+DMRS+G+
Sbjct: 300 VSSYAKQGFKEEALKAFGEMKSLGFVPEEVTYSSVISLSVKAGDWEKAIGLYEDMRSQGI 359
Query: 355 IPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQK 414
+PSNYTCA++LSLYYK ENY KALSLF++ME+ K+ ADEVI GL+IRIYGKLGL+ DAQ
Sbjct: 360 VPSNYTCATMLSLYYKTENYPKALSLFADMERNKIPADEVIRGLIIRIYGKLGLFHDAQS 419
Query: 415 TFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYV 474
F ETE+L LL+DEKTYLAM+QVHL S NV KALDVIE+MK+R++ LSRFAYIVMLQCY
Sbjct: 420 MFEETERLNLLADEKTYLAMSQVHLNSGNVVKALDVIEMMKTRDIPLSRFAYIVMLQCYA 479
Query: 475 MKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEEL 534
+++ AE F+ L+KTGLPDA SCNDMLNLY +L+L EKAKGFI I DQV FD EL
Sbjct: 480 KIQNVDCAEEAFRALSKTGLPDASSCNDMLNLYTRLNLGEKAKGFIKQIMVDQVHFDIEL 539
Query: 535 YRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVAS 594
Y++ M++YCKEGMV +A+ + +MG+ +KD++F+QT + +H + + +
Sbjct: 540 YKTAMRVYCKEGMVAEAQDLIVKMGREARVKDNRFVQTLAESMH--IVNKHDKHEAVLNV 597
Query: 595 NQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDG----MRLT 650
+QLD+MALGLML+L L + N ++ + IL L+ T GSS V+++I F+R+G +
Sbjct: 598 SQLDVMALGLMLNLRLKEGNLNETKAILNLMFKTDLGSSAVNRVISSFVREGDVSKAEMI 657
Query: 651 FKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKC 710
+++LG +++E A+LI YG+ KLKEA+ ++ AA S PGK V+RSMIDAY +C
Sbjct: 658 ADIIIRLGLRMEEETIATLIAVYGRQHKLKEAKRLYLAAGESKTPGKSVIRSMIDAYVRC 717
Query: 711 GKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAY 770
G ED Y L+ E+ +GC AV ISILVN LTN GKH +AE I + N++LDTV Y
Sbjct: 718 GWLEDAYGLFMESAEKGCDPGAVTISILVNALTNRGKHREAEHISRTCLEKNIELDTVGY 777
Query: 771 NTCIKAMLGAGKLHFAASIYERM----------------LVYGRGRKLDKALEMFNTARS 814
NT IKAML AGKL A+ IYERM VYGRG +LDKA+E+F+ AR
Sbjct: 778 NTLIKAMLEAGKLQCASEIYERMHTSGVPCSIQTYNTMISVYGRGLQLDKAIEIFSNARR 837
Query: 815 LGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNE 874
GL LDEK Y N++ YGK GK EA LFSEMQ++GIKPG SYN+++ + A + L++E
Sbjct: 838 SGLYLDEKIYTNMIMHYGKGGKMSEALSLFSEMQKKGIKPGTPSYNMMVKICATSRLHHE 897
Query: 875 VEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLS 934
V++L+QAM+R+G + TYL+L+Q Y E+++++EAE+TI ++++GIP S +H + LLS
Sbjct: 898 VDELLQAMERNGRCTDLSTYLTLIQVYAESSQFAEAEKTITLVKEKGIPLSHSHFSSLLS 957
Query: 935 AFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEE-VRESSES 993
A KAG+M EA R Y + AGI PD AC RT+LKGYM G E+GI +E+ +R S E
Sbjct: 958 ALVKAGMMEEAERTYCKMSEAGISPDSACKRTILKGYMTCGDAEKGILFYEKMIRSSVED 1017
Query: 994 DKFIMSAAVHLYRYAGKEHE 1013
D+F+ S LY+ GKE +
Sbjct: 1018 DRFVSSVVEDLYKAVGKEQD 1037
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297813013|ref|XP_002874390.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297320227|gb|EFH50649.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1166 bits (3017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 591/1039 (56%), Positives = 755/1039 (72%), Gaps = 42/1039 (4%)
Query: 4 LSSTFIATTTHFQFQHWNPKPPKKNSKISLKSR----VRPDPWSLSDGSDITKPKPRSKN 59
+ S F+ +TTHF + PK P +NSKIS+KS VRPDPWSLSDG+ KPKPR +
Sbjct: 1 MKSDFLTSTTHFNPSIFLPKIPSRNSKISIKSSSSSKVRPDPWSLSDGNP-EKPKPRYER 59
Query: 60 RKRPLSDDNARRILKAKAQYLSVLRRNQGPTAATPKWIKRTPEQMVKYLEDDRNGHLYGK 119
K PLSDD+ARRI+K KAQYLS LRRNQG A TPKWIKRTPEQMV+YLEDDRNG +YGK
Sbjct: 60 PKHPLSDDDARRIIKKKAQYLSTLRRNQGSHAMTPKWIKRTPEQMVQYLEDDRNGQMYGK 119
Query: 120 HVVAAIKAVRAM----DGSRNVRVVMGSFVGKLSFREMCVVLKEQKGWRQATEFFAWMKL 175
HVVAAIK VR + +GS ++R+VM SFV KLSFR+MCVVLKEQ+GWRQ +FF+WMKL
Sbjct: 120 HVVAAIKTVRGLSQRREGSDDMRLVMSSFVAKLSFRDMCVVLKEQRGWRQVRDFFSWMKL 179
Query: 176 QLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHK 235
QLSYRP VV YTI+LRLYGQVGKIK+AE+TFLEMLE GCEPD +ACGTMLCTYARWG H
Sbjct: 180 QLSYRPSVVVYTIVLRLYGQVGKIKMAEETFLEMLEVGCEPDGVACGTMLCTYARWGRHN 239
Query: 236 AMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVI 295
AMLTFY AV+ER I+ ST+V+NFMLSSL K QM+++GV P +FTYTLV+
Sbjct: 240 AMLTFYKAVQERRIILSTSVYNFMLSSLQKN-----------QMVEEGVPPNEFTYTLVV 288
Query: 296 SSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLI 355
SS+ K EEAL F EMKS GF PEEVTYS +I LS+K G D+A+ LY+DMRSRG++
Sbjct: 289 SSYAKQGFKEEALWAFGEMKSLGFIPEEVTYSSVIGLSVKAGDWDQAVGLYEDMRSRGIV 348
Query: 356 PSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKT 415
PSNYTCAS+LSLYYK ENY KALSLF++ME+ K+ ADEVI GL+IRIYGKLGL+ DAQ
Sbjct: 349 PSNYTCASMLSLYYKTENYPKALSLFADMERNKIPADEVIRGLIIRIYGKLGLFHDAQSI 408
Query: 416 FAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVM 475
F ETE+L LL+DEKTYLAM+QVHL S NV KALDVIE+MK+R++ LSRFAYIVMLQCY
Sbjct: 409 FEETERLNLLADEKTYLAMSQVHLNSGNVVKALDVIEMMKTRDIPLSRFAYIVMLQCYAK 468
Query: 476 KEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELY 535
+++ AE F+ L+ TGLPDA SCNDMLNLY +L+L EKAKGFI I DQV F+ ELY
Sbjct: 469 IQNVDCAEEAFRALSNTGLPDASSCNDMLNLYTRLNLGEKAKGFIKQITADQVQFNIELY 528
Query: 536 RSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASN 595
+ M++YCKEGMV +A + V++MG+ +KD +F+QT + ++ + + + + +
Sbjct: 529 KMAMRVYCKEGMVAEAIELVDKMGRVAVVKDDRFVQTLAEAMYIEINK-LDKHEAVLNVS 587
Query: 596 QLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDG----MRLTF 651
+LD+ ALG++L+L L + N + + IL L+ T GS V++++ F+R+G +
Sbjct: 588 RLDVTALGMLLNLRLKEGNLIETKAILNLMFQTDLGSLAVNRVLSTFVREGDVFKAEILA 647
Query: 652 KFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCG 711
++KLG +++E A+LI YG+ KLKEA+ ++ +A S GK V+ SMIDAY +CG
Sbjct: 648 DIIIKLGLRIEEETVATLIAVYGRQHKLKEAKRLYVSAGESKTLGKSVISSMIDAYVRCG 707
Query: 712 KAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYN 771
ED + L+ E+ +GC A+ ISILVN LTN GKH +AE I + N+ LDTV YN
Sbjct: 708 WLEDAFGLFMESAEKGCDPGAITISILVNALTNRGKHREAEHISRTCLEKNMALDTVGYN 767
Query: 772 TCIKAMLGAGKLHFAASIYERM----------------LVYGRGRKLDKALEMFNTARSL 815
T IKAML AGKL A+ IYERM VYGRG +LDKA+E+F+ AR
Sbjct: 768 TLIKAMLEAGKLQCASEIYERMHTSGVPCSIQTYNTMISVYGRGLQLDKAIEIFSNARRS 827
Query: 816 GLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEV 875
GL LDEK Y N++ YGKAGK EA LFSEMQ++GIKPG SYN+++ + A + L+ EV
Sbjct: 828 GLYLDEKIYTNMIMHYGKAGKMSEALSLFSEMQKKGIKPGTPSYNMVVKICATSRLHREV 887
Query: 876 EKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSA 935
++L+QAM+R G S TYLSL+QAY E+++++EAE+TI MQ++GIP +H + LLSA
Sbjct: 888 DELLQAMERTGICTESSTYLSLIQAYAESSQFAEAEKTITLMQEKGIPLFHSHFSLLLSA 947
Query: 936 FSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEV-RESSESD 994
F+KAG+M EA R+Y++ AGI PD AC RT+LKGYM G E+GI +++V R S E D
Sbjct: 948 FAKAGMMDEAERIYSKMSEAGISPDSACKRTILKGYMSCGDAEKGILFYKKVIRSSVEDD 1007
Query: 995 KFIMSAAVHLYRYAGKEHE 1013
+F+ S LY+ GKEH+
Sbjct: 1008 RFVSSVVQDLYKAVGKEHD 1026
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|55295905|dbj|BAD67773.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1003 bits (2593), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/1006 (51%), Positives = 679/1006 (67%), Gaps = 72/1006 (7%)
Query: 59 NRKRPLSDDNARRILKAKAQYLSVLRRNQGPTAATPKWIKRTPEQMVKYLEDDRNGHLYG 118
R+RP RR+L +AQ L RR QG A TP+W++RTP+QM +Y+EDDR GH+YG
Sbjct: 46 QRQRPY-----RRLLHDEAQRLRRERRGQGSGAHTPRWVRRTPDQMARYVEDDRAGHVYG 100
Query: 119 KHVVAAIKAVR-----AMDGSRNVRVVMGSFVGKLSFREMCVVLKEQKGWRQATEFFAWM 173
+HVVAA++A R + S ++R M SFV KL+FREMC VL E +GWRQA +FFAWM
Sbjct: 101 RHVVAAVRAARATASCSSPSSADMREAMASFVAKLTFREMCFVLHELRGWRQARDFFAWM 160
Query: 174 KLQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGN 233
KLQL Y P VVAYTILLRLYGQVGK+KLAE TFLEML+AGCEPD +ACGT+LC YARWG
Sbjct: 161 KLQLCYEPSVVAYTILLRLYGQVGKVKLAEVTFLEMLQAGCEPDAVACGTLLCAYARWGK 220
Query: 234 HKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTL 293
ML FY+AV+ R IVPS +VFNFM+SSL K+ H KVI LW QM++ VAP FTYT+
Sbjct: 221 LNDMLMFYAAVRRRDIVPSISVFNFMVSSLQKQKLHGKVIHLWEQMLEANVAPNQFTYTV 280
Query: 294 VISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRG 353
VI S+ K +LEEA+ F EMK F PEE TYS LISL KHGK +EAL LY +M+ +
Sbjct: 281 VIGSYAKEGMLEEAMDAFGEMKRRRFVPEEATYSLLISLCAKHGKGEEALGLYDEMKVKS 340
Query: 354 LIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQ 413
++PSNYTCAS+L+LYYKNE+YSKALSLFSEME+ K+ DEVIYG+L+RIYGKLGLYEDAQ
Sbjct: 341 IVPSNYTCASVLTLYYKNEDYSKALSLFSEMEQNKIVPDEVIYGILVRIYGKLGLYEDAQ 400
Query: 414 KTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCY 473
+ F E ++ GLLSDE+TY+AMAQVH+ +N ++AL V++ M++RN+ S+F+Y +L+C+
Sbjct: 401 RMFEEIDKAGLLSDEQTYVAMAQVHMNVQNYDRALQVLDAMRARNVKPSQFSYSALLRCH 460
Query: 474 VMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEE 533
V KED+ +AE TF+ L+ G PD CND+L LY++L +KA+ I +RK+ + FDE+
Sbjct: 461 VAKEDVDAAEDTFRALSNYGPPDVFCCNDLLRLYMRLGHLDKARALILKMRKEALQFDED 520
Query: 534 LYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVA 593
L +V+++ CK + D + E + GS SK +
Sbjct: 521 LCVTVLEVCCKTSINKDTDNLTEVIQNEGS--SSKVL----------------------- 555
Query: 594 SNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDG----MRL 649
N D L +M LK LL GG S VSQLI KF R+G +
Sbjct: 556 -NPTDSSTLSMM----------------LKSLLDKPGGLSSVSQLIMKFAREGSTDEAKF 598
Query: 650 TFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAK 709
++ L +LG DD A+LI YG+ Q+L++AQ +F+ A+ S G V +M+DA +
Sbjct: 599 LYEHLTELGAKPDDTAIATLIVQYGQAQQLEQAQKLFETASTSFPVGGSVYNAMVDALCR 658
Query: 710 CGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVA 769
CGK E+ Y L+ E QG DAV ISILV LT K ++AE II+ D +LDTV
Sbjct: 659 CGKTEEAYRLFMELIDQGHNGDAVTISILVTHLTKQEKFQEAENIIYRCLHDEAELDTVV 718
Query: 770 YNTCIKAMLGAGKLHFAASIYERML----------------VYGRGRKLDKALEMFNTAR 813
YNT IK+ML +GKL+ A SIY+RM+ VYG+G KL+KA+EMF+ A+
Sbjct: 719 YNTFIKSMLESGKLYSAVSIYDRMISSGIPRSMQTFNIMISVYGQGGKLEKAVEMFSAAQ 778
Query: 814 SLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYN 873
LGL +DEK Y N++SFYGKAGK HEASLLFS M+E+GI+PG IS+N +IN YA +GL+N
Sbjct: 779 ELGLPIDEKTYTNMLSFYGKAGKHHEASLLFSRMKEDGIRPGKISFNTMINAYATSGLHN 838
Query: 874 EVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLL 933
E E + Q MQ++ P+S TYL+L++AYTE YS+AEE I M + + PSCTH NHL+
Sbjct: 839 EAEIIFQEMQKNNHVPDSHTYLALIRAYTEGKCYSKAEEAIQMMLRSNMTPSCTHFNHLI 898
Query: 934 SAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSES 993
SAF K G + EA R+YN+ AGI DLAC RTM++ ++DHGY+++GI FE +
Sbjct: 899 SAFLKEGQIDEAQRMYNQMEEAGIPADLACCRTMMRMHLDHGYVDDGILFFETACRLLKP 958
Query: 994 DKFIMSAAVHLYRYAGKEHEANDILDSMNSVRIPFMKNLEVGSKIK 1039
D FI+SAA HLY ++G+E EA D+LD++N F++NL+VGSK++
Sbjct: 959 DSFILSAAFHLYEHSGRESEAGDVLDAINMSGASFLRNLKVGSKLE 1004
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218197431|gb|EEC79858.1| hypothetical protein OsI_21342 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 1000 bits (2586), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/1006 (51%), Positives = 678/1006 (67%), Gaps = 72/1006 (7%)
Query: 59 NRKRPLSDDNARRILKAKAQYLSVLRRNQGPTAATPKWIKRTPEQMVKYLEDDRNGHLYG 118
R+RP RR+L +AQ L RR QG A TP+W++RTP+QM +Y+EDDR GH+YG
Sbjct: 46 QRQRPY-----RRLLHDEAQRLRRERRGQGSGAHTPRWVRRTPDQMARYVEDDRAGHVYG 100
Query: 119 KHVVAAIKAVR-----AMDGSRNVRVVMGSFVGKLSFREMCVVLKEQKGWRQATEFFAWM 173
+HVVAA++A R + S ++R M SFV KL+FREMC VL E +GWRQA +FFAWM
Sbjct: 101 RHVVAAVRAARATASCSSPSSADMREAMASFVAKLTFREMCFVLHELRGWRQARDFFAWM 160
Query: 174 KLQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGN 233
KLQL Y P VVAYTILLRLYGQVGKIKLAE TFLEML+AGCEPD +ACGT+LC YARWG
Sbjct: 161 KLQLCYEPSVVAYTILLRLYGQVGKIKLAEVTFLEMLQAGCEPDAVACGTLLCAYARWGK 220
Query: 234 HKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTL 293
ML FY+AV+ R IVPS +VFNFM+SSL K+ H KVI LW QM++ VAP FTYT+
Sbjct: 221 LNDMLMFYAAVRRRDIVPSISVFNFMVSSLQKQKLHGKVIHLWEQMLEANVAPNQFTYTV 280
Query: 294 VISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRG 353
VI S+ K +LEEA+ F EMK F PEE TYS LISL KHGK +EAL LY +M+ +
Sbjct: 281 VIGSYAKEGMLEEAMDAFGEMKRRRFVPEEATYSLLISLCAKHGKGEEALGLYDEMKVKS 340
Query: 354 LIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQ 413
++PSNYTCAS+L+LYYKNE+YSKALSLFSEME+ K+ DEVIYG+L+RIYGKLGLYEDAQ
Sbjct: 341 IVPSNYTCASVLTLYYKNEDYSKALSLFSEMEQNKIVPDEVIYGILVRIYGKLGLYEDAQ 400
Query: 414 KTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCY 473
+ F E ++ GLLSDE+TY+AMAQVH+ +N ++AL V++ M++RN+ S+F+Y +L+C+
Sbjct: 401 RMFEEIDKAGLLSDEQTYVAMAQVHMNVQNYDRALQVLDAMRARNVKPSQFSYSALLRCH 460
Query: 474 VMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEE 533
V KED+ +AE TF+ L+ G PD CND+L LY++L +KA+ I +RK+ + FDE+
Sbjct: 461 VAKEDVDAAEDTFRALSNYGPPDVFCCNDLLRLYMRLGHLDKARALILKMRKEALQFDED 520
Query: 534 LYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVA 593
L +V+++ CK + D + E + GS SK +
Sbjct: 521 LCVTVLEVCCKTSINKDTDNLTEVIQNEGS--SSKVL----------------------- 555
Query: 594 SNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDG----MRL 649
N D L +M LK LL G S VSQLI KF R+G +
Sbjct: 556 -NPTDSSTLSMM----------------LKSLLDKPEGLSSVSQLIMKFAREGSTDEAKF 598
Query: 650 TFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAK 709
++ L +LG DD A+LI YG+ Q+L++AQ +F+ A+ S G V +M+DA +
Sbjct: 599 LYEHLTELGAKPDDTAIATLIVQYGQAQQLEQAQKLFETASTSFPVGGSVYNAMVDALCR 658
Query: 710 CGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVA 769
CGK E+ Y L+ E QG DAV ISILV LT K ++AE II+ D +LDTV
Sbjct: 659 CGKTEEAYRLFMELIDQGHNGDAVTISILVTHLTKQEKFQEAENIIYRCLHDEAELDTVV 718
Query: 770 YNTCIKAMLGAGKLHFAASIYERML----------------VYGRGRKLDKALEMFNTAR 813
YNT IK+ML +GKL+ A SIY+RM+ VYG+G KL+KA+EMF+ A+
Sbjct: 719 YNTFIKSMLESGKLYSAVSIYDRMISSGIPRSMQTFNIMISVYGQGGKLEKAVEMFSAAQ 778
Query: 814 SLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYN 873
LGL +DEK Y N++SFYGKAGK HEASLLFS M+E+GI+PG IS+N +IN YA +GL+N
Sbjct: 779 ELGLPIDEKTYTNMLSFYGKAGKHHEASLLFSRMKEDGIRPGKISFNTMINAYATSGLHN 838
Query: 874 EVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLL 933
E E + Q MQ++ P+S TYL+L++AYTE YS+AEE I M + + PSCTH NHL+
Sbjct: 839 EAEIIFQEMQKNNHVPDSHTYLALIRAYTEGKCYSKAEEAIQMMLRSNMTPSCTHFNHLI 898
Query: 934 SAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSES 993
SAF K G + EA R+YN+ AGI DLAC RTM++ ++DHGY+++GI FE +
Sbjct: 899 SAFLKEGQIDEAQRMYNQMEEAGIPADLACCRTMMRMHLDHGYVDDGILFFETACRLLKP 958
Query: 994 DKFIMSAAVHLYRYAGKEHEANDILDSMNSVRIPFMKNLEVGSKIK 1039
D FI+SAA HLY ++G+E EA D+LD++N F++NL+VGSK++
Sbjct: 959 DSFILSAAFHLYEHSGRESEAGDVLDAINMSGASFLRNLKVGSKLE 1004
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1041 | ||||||
| TAIR|locus:2181286 | 1038 | EMB976 "AT5G27270" [Arabidopsi | 0.779 | 0.781 | 0.565 | 1.8e-243 | |
| TAIR|locus:2116772 | 1112 | PGR3 "AT4G31850" [Arabidopsis | 0.749 | 0.701 | 0.242 | 1.5e-51 | |
| TAIR|locus:2027744 | 991 | AT1G73710 "AT1G73710" [Arabido | 0.222 | 0.234 | 0.291 | 7e-42 | |
| TAIR|locus:2077637 | 871 | AT3G06920 "AT3G06920" [Arabido | 0.722 | 0.863 | 0.217 | 1.6e-38 | |
| TAIR|locus:2827701 | 874 | AT2G17140 [Arabidopsis thalian | 0.536 | 0.638 | 0.209 | 4.7e-23 | |
| TAIR|locus:2168078 | 907 | AT5G59900 "AT5G59900" [Arabido | 0.669 | 0.768 | 0.223 | 1.8e-31 | |
| TAIR|locus:2175443 | 952 | AT5G04810 [Arabidopsis thalian | 0.371 | 0.406 | 0.223 | 4.5e-20 | |
| TAIR|locus:2056078 | 867 | LOJ "LATERAL ORGAN JUNCTION" [ | 0.641 | 0.770 | 0.220 | 4.8e-28 | |
| TAIR|locus:2054331 | 822 | EMB2654 "EMBRYO DEFECTIVE 2654 | 0.392 | 0.497 | 0.251 | 5e-34 | |
| TAIR|locus:2027166 | 862 | PTAC2 "plastid transcriptional | 0.423 | 0.511 | 0.214 | 2.3e-32 |
| TAIR|locus:2181286 EMB976 "AT5G27270" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2346 (830.9 bits), Expect = 1.8e-243, P = 1.8e-243
Identities = 472/834 (56%), Positives = 595/834 (71%)
Query: 4 LSSTFIATTTHFQFQHW-----NXXXXXXXXXXXXXXRVRPDPWSLSDGSDITXXXXXXX 58
+ S F+ +TTHF + + +VRPDPWSLSDG+
Sbjct: 1 MKSDFLTSTTHFNPSIFLPKIPSRNSRISIKSSSSSSKVRPDPWSLSDGNP-EKPKPRYE 59
Query: 59 XXXXXLSDDNARRILKAKAQYLSVLRRNQGPTAATPKWIKRTPEQMVKYLEDDRNGHLYG 118
LSDD+ARRI+K KAQYLS LRRNQG A TPKWIKRTPEQMV+YLEDDRNG +YG
Sbjct: 60 RPKHPLSDDDARRIIKKKAQYLSTLRRNQGSQAMTPKWIKRTPEQMVQYLEDDRNGQMYG 119
Query: 119 KHVVAAIKAVRAMD----GSRNVRVVMGSFVGKLSFREMCVVLKEQKGWRQATEFFAWMK 174
KHVVAAIK VR + GS ++R VM SFV KLSFR+MCVVLKEQ+GWRQ +FF+WMK
Sbjct: 120 KHVVAAIKTVRGLSQRRQGSDDMRFVMSSFVAKLSFRDMCVVLKEQRGWRQVRDFFSWMK 179
Query: 175 LQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNH 234
LQLSYRP VV YTI+LRLYGQVGKIK+AE+TFLEMLE GCEPD +ACGTMLCTYARWG H
Sbjct: 180 LQLSYRPSVVVYTIVLRLYGQVGKIKMAEETFLEMLEVGCEPDAVACGTMLCTYARWGRH 239
Query: 235 KAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLV 294
AMLTFY AV+ER I+ ST+V+NFMLSSL KKS+H KVIDLW +M+++GV P +FTYTLV
Sbjct: 240 SAMLTFYKAVQERRILLSTSVYNFMLSSLQKKSFHGKVIDLWLEMVEEGVPPNEFTYTLV 299
Query: 295 ISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGL 354
+SS+ K EEALK F EMKS GF PEEVTYS +ISLS+K G ++A+ LY+DMRS+G+
Sbjct: 300 VSSYAKQGFKEEALKAFGEMKSLGFVPEEVTYSSVISLSVKAGDWEKAIGLYEDMRSQGI 359
Query: 355 IPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQK 414
+PSNYTCA++LSLYYK ENY KALSLF++ME+ K+ ADEVI GL+IRIYGKLGL+ DAQ
Sbjct: 360 VPSNYTCATMLSLYYKTENYPKALSLFADMERNKIPADEVIRGLIIRIYGKLGLFHDAQS 419
Query: 415 TFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYV 474
F ETE+L LL+DEKTYLAM+QVHL S NV KALDVIE+MK+R++ LSRFAYIVMLQCY
Sbjct: 420 MFEETERLNLLADEKTYLAMSQVHLNSGNVVKALDVIEMMKTRDIPLSRFAYIVMLQCYA 479
Query: 475 MKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEEL 534
+++ AE F+ L+KTGLPDA SCNDMLNLY +L+L EKAKGFI I DQV FD EL
Sbjct: 480 KIQNVDCAEEAFRALSKTGLPDASSCNDMLNLYTRLNLGEKAKGFIKQIMVDQVHFDIEL 539
Query: 535 YRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVAS 594
Y++ M++YCKEGMV +A+ + +MG+ +KD++F+QT + +H + + +
Sbjct: 540 YKTAMRVYCKEGMVAEAQDLIVKMGREARVKDNRFVQTLAESMH--IVNKHDKHEAVLNV 597
Query: 595 NQXXXXXXXXXXXXXXTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDG----MRLT 650
+Q + N ++ + IL L+ T GSS V+++I F+R+G +
Sbjct: 598 SQLDVMALGLMLNLRLKEGNLNETKAILNLMFKTDLGSSAVNRVISSFVREGDVSKAEMI 657
Query: 651 FKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKC 710
+++LG +++E A+LI YG+ KLKEA+ ++ AA S PGK V+RSMIDAY +C
Sbjct: 658 ADIIIRLGLRMEEETIATLIAVYGRQHKLKEAKRLYLAAGESKTPGKSVIRSMIDAYVRC 717
Query: 711 GKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAY 770
G ED Y L+ E+ +GC AV ISILVN LTN GKH +AE I + N++LDTV Y
Sbjct: 718 GWLEDAYGLFMESAEKGCDPGAVTISILVNALTNRGKHREAEHISRTCLEKNIELDTVGY 777
Query: 771 NTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSL---GLSLDE 821
NT IKAML AGKL A+ IYERM G + +++ +NT S+ GL LD+
Sbjct: 778 NTLIKAMLEAGKLQCASEIYERMHTSG----VPCSIQTYNTMISVYGRGLQLDK 827
|
|
| TAIR|locus:2116772 PGR3 "AT4G31850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 567 (204.7 bits), Expect = 1.5e-51, P = 1.5e-51
Identities = 200/826 (24%), Positives = 359/826 (43%)
Query: 181 PCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTF 240
P VV YT+L+ K+ A++ F +M +PD + T+L ++ + ++ F
Sbjct: 291 PDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQF 350
Query: 241 YSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVK 300
+S +++ G VP F ++ +L K + D M D+G+ P TY +I ++
Sbjct: 351 WSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLR 410
Query: 301 GSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYT 360
L++AL+ F M+S G P TY I K G S AL ++ M+++G+ P+
Sbjct: 411 VHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVA 470
Query: 361 C-ASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAET 419
C ASL SL + +A +F ++ + D V Y ++++ Y K+G ++A K +E
Sbjct: 471 CNASLYSLAKAGRD-REAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEM 529
Query: 420 EQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDL 479
+ G D ++ + V++A + MK + + Y +L +
Sbjct: 530 MENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKI 589
Query: 480 GSAEGTFQTLAKTGLP-DAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSV 538
A F+ + + G P + + N + + K D A + + D Y ++
Sbjct: 590 QEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTI 649
Query: 539 MKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHG----GCTENA-EFGDKFV- 592
+ K G V +A F +M K L F+ T C +L G E+A + F+
Sbjct: 650 IFGLVKNGQVKEAMCFFHQMKK---LVYPDFV-TLCTLLPGVVKASLIEDAYKIITNFLY 705
Query: 593 -----ASNQXXXXXXXXXXXXXXTDDNFSKREKILKLLLHTAGGSSVVS--QLICKFIR- 644
+N D+ S E+++ + G S +V + CK
Sbjct: 706 NCADQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNV 765
Query: 645 DGMRLTF-KFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVF-KAATVSCKPGKLVLRS 702
G R F KF LG LIG + ++ AQDVF + + C P
Sbjct: 766 SGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNF 825
Query: 703 MIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDN 762
++DAY K GK ++++ LYKE + C + + +I+++ L G + A + ++ D
Sbjct: 826 LLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDR 885
Query: 763 LDLDTVA--YNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLD 820
D A Y I + +G+L+ A ++E ML YG R N A
Sbjct: 886 -DFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGC-RP--------NCA-------- 927
Query: 821 EKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQ 880
Y L++ +GKAG+ A LF M +EG++P L +Y+++++ G +E +
Sbjct: 928 --IYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFK 985
Query: 881 AMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQ-KQGIPPSCTHVNHLLSAFSKA 939
++ G +P+ Y ++ ++ + EA N M+ +GI P N L+ A
Sbjct: 986 ELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIA 1045
Query: 940 GLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFE 985
G++ EA ++YNE AG+ P++ + +++GY G E +++
Sbjct: 1046 GMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQ 1091
|
|
| TAIR|locus:2027744 AT1G73710 "AT1G73710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 293 (108.2 bits), Expect = 7.0e-42, Sum P(3) = 7.0e-42
Identities = 68/233 (29%), Positives = 114/233 (48%)
Query: 790 YERML-VYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQ 848
Y M+ YG+ + +KAL +F ++ G DE Y +L EA + +EM
Sbjct: 518 YNVMIKAYGKAKLHEKALSLFKGMKNQGTWPDECTYNSLFQMLAGVDLVDEAQRILAEML 577
Query: 849 EEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYS 908
+ G KPG +Y +I Y GL ++ L +AM++ G PN Y SL+ + E+
Sbjct: 578 DSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFAESGMVE 637
Query: 909 EAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTML 968
EA + M++ G+ + + L+ A+SK G + EA RVY++ + PD+A +ML
Sbjct: 638 EAIQYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSEGGPDVAASNSML 697
Query: 969 KGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSM 1021
D G + E ++F +RE D + ++LY+ G EA ++ + M
Sbjct: 698 SLCADLGIVSEAESIFNALREKGTCDVISFATMMYLYKGMGMLDEAIEVAEEM 750
|
|
| TAIR|locus:2077637 AT3G06920 "AT3G06920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 445 (161.7 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 173/795 (21%), Positives = 334/795 (42%)
Query: 148 LSFR---EMCV-VLKEQKGWRQATEFFAWMKLQLSYRPCVVAYTILLRLYGQVGKIKLAE 203
LSF+ E + VL+ K +A E+F W + + C +Y LL + + +
Sbjct: 59 LSFKPQPEFVIGVLRRLKDVNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALD 118
Query: 204 QTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSL 263
Q EM AG P C M+ + + +++ P+ + + ++ +
Sbjct: 119 QILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAF 178
Query: 264 HKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEE 323
++ ++ L++QM + G PT +T +I F K ++ AL +EMKS+ +
Sbjct: 179 SAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADI 238
Query: 324 VTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSE 383
V Y+ I K GK D A + ++ + GL P T S++ + K +A+ +F
Sbjct: 239 VLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEH 298
Query: 384 MEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRN 443
+EK + Y +I YG G +++A G + Y +
Sbjct: 299 LEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGK 358
Query: 444 VEKALDVIELMKSRNMW-LSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGL-PDAGSCN 501
V++AL V E MK LS + ++ + C K D +A ++ K GL P+ + N
Sbjct: 359 VDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLD--TAFELRDSMQKAGLFPNVRTVN 416
Query: 502 DMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEM--- 558
M++ K ++A + DE + S++ K G V DA + E+M
Sbjct: 417 IMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDS 476
Query: 559 -GKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASN-----QXXXXXXXXXXXXXXTD 612
+ S+ + I+ F HG + + + N Q +
Sbjct: 477 DCRTNSIVYTSLIKNFFN--HGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPE 534
Query: 613 DNFSKREKI-LKLLLHTAGGSSVVSQLICK--FIRDGMRLTFKFLMKLGYILDDEVTASL 669
+ E+I + + A S++ + K F + L F + + G +LD +
Sbjct: 535 KGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYEL-FYSMKEQGCVLDTRAYNIV 593
Query: 670 IGSYGKHQKLKEAQDVFKAA-TVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGC 728
I + K K+ +A + + T +P + S+ID AK + ++ Y+L++EA ++
Sbjct: 594 IDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRI 653
Query: 729 ALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAAS 788
L+ V S L++ G+ ++A +I+ Q L + +N+ + A++ A
Sbjct: 654 ELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKA-------- 705
Query: 789 IYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQ 848
++++AL F + + L + ++ Y L++ K K ++A + + EMQ
Sbjct: 706 -----------EEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQ 754
Query: 849 EEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYS 908
++G+KP ISY +I+ A AG E L + +G P+S Y ++++ + +
Sbjct: 755 KQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAM 814
Query: 909 EAEETINSMQKQGIP 923
+A +++G+P
Sbjct: 815 DAFSLFEETRRRGLP 829
|
|
| TAIR|locus:2827701 AT2G17140 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 303 (111.7 bits), Expect = 4.7e-23, P = 4.7e-23
Identities = 122/582 (20%), Positives = 242/582 (41%)
Query: 248 GIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEA 307
GI P T FN ++ +L S +L+ +M +KG P +FT+ +++ + K L ++
Sbjct: 142 GIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKG 201
Query: 308 LKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSL 367
L+ N M+S G P +V Y+ ++S + G++D++ + + MR GL+P T S +S
Sbjct: 202 LELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISA 261
Query: 368 YYKNENYSKALSLFSEMEKFKVAA----DEVIYGLLIRIYGKLGLYEDAQKTFAETEQLG 423
K A +FS+ME + + + Y L+++ + K+GL EDA+ F +
Sbjct: 262 LCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIREND 321
Query: 424 LLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAE 483
L+ ++Y Q + +A V++ M + + S ++Y +++ L A+
Sbjct: 322 DLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAK 381
Query: 484 GTFQTLAKTGL-PDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIY 542
+ + G+ PDA + +L+ Y + + AK + + ++ + ++
Sbjct: 382 TIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSL 441
Query: 543 CKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGD-----KFVASNQX 597
K G +++AE+ + +M + G D+ C I+ G + E K + +
Sbjct: 442 WKMGRISEAEELLRKMNEKGYGLDT----VTCNIIVDGLCGSGELDKAIEIVKGMRVHGS 497
Query: 598 XXXXXXXXXXXXXTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDGMRLTFKFLMKL 657
DD+ + + L+ + S++++ L CK R F +
Sbjct: 498 AALGNLGNSYIGLVDDSLIENNCLPDLITY----STLLNGL-CKAGRFAEAKNL-FAEMM 551
Query: 658 GYILD-DEVTASL-IGSYGKHQKLKEAQDVFK-AATVSCKPGKLVLRSMIDAYAKCGKAE 714
G L D V ++ I + K K+ A V K C S+I +
Sbjct: 552 GEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIF 611
Query: 715 DVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCI 774
+++ L E +G + + + + L K E A ++ Q N+ + ++ I
Sbjct: 612 EIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLI 671
Query: 775 KAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLG 816
+A A ++E + G+K MFN + G
Sbjct: 672 EAFCKVPDFDMAQEVFETAVSIC-GQKEGLYSLMFNELLAAG 712
|
|
| TAIR|locus:2168078 AT5G59900 "AT5G59900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 381 (139.2 bits), Expect = 1.8e-31, P = 1.8e-31
Identities = 166/743 (22%), Positives = 298/743 (40%)
Query: 170 FAWMKLQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDE-IACGTM--LC 226
F M ++S P V + LL + LA + F +M+ G PD I G + LC
Sbjct: 179 FKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLC 238
Query: 227 TYARWGNHKAMLTFYSAVK-ERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVA 285
K M+ A + IVP +N ++ L KK + + + + + K +
Sbjct: 239 ELKDLSRAKEMIAHMEATGCDVNIVP----YNVLIDGLCKKQKVWEAVGIKKDLAGKDLK 294
Query: 286 PTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSL 345
P TY ++ K E L+ +EM F+P E S L+ K GK +EAL+L
Sbjct: 295 PDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNL 354
Query: 346 YKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGK 405
K + G+ P+ + +L+ K + +A LF M K + ++V Y +LI ++ +
Sbjct: 355 VKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCR 414
Query: 406 LGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFA 465
G + A E GL Y ++ H ++ A + M ++ + +
Sbjct: 415 RGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVT 474
Query: 466 YIVMLQCYVMKEDLGSAEGTFQTLAKTGL-PDAGSCNDMLNLYIKLDLTEKAKGFIAHIR 524
Y ++ Y K + A + + G+ P + +L+ + L A +
Sbjct: 475 YTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMA 534
Query: 525 KDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGC-TE 583
+ V + Y +++ YC+EG ++ A +F++EM + G + D+ ++ ++HG C T
Sbjct: 535 EWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDT---YSYRPLIHGLCLTG 591
Query: 584 NAEFGDKFVASNQXXXXXXXXXXXXXXTDDNFSKREKILKLL--LHTAGGSSVVSQLICK 641
A FV F + K+ + L V L+C
Sbjct: 592 QASEAKVFVDGLHKGNCELNEICYTGLLH-GFCREGKLEEALSVCQEMVQRGVDLDLVCY 650
Query: 642 FIR-DGM------RLTFKFLMKL---GYILDDEVTASLIGSYGKHQKLKEAQDVFKAA-T 690
+ DG +L F L ++ G DD + S+I + K KEA ++
Sbjct: 651 GVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMIN 710
Query: 691 VSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQ 750
C P ++ ++I+ K G + +L + + V ++ LT Q
Sbjct: 711 EGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQ 770
Query: 751 AEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFN 810
+ +HN+ L +T YN I+ G++ A+ + RM+ G D
Sbjct: 771 KAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMI----G---D------- 816
Query: 811 TARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAG 870
G+S D Y +++ + +A L++ M E+GI+P ++YN +I+ AG
Sbjct: 817 -----GVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAG 871
Query: 871 LYNEVEKLIQAMQRDGFSPNSFT 893
+ +L M R G PN+ T
Sbjct: 872 EMGKATELRNEMLRQGLIPNNKT 894
|
|
| TAIR|locus:2175443 AT5G04810 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 276 (102.2 bits), Expect = 4.5e-20, P = 4.5e-20
Identities = 87/389 (22%), Positives = 166/389 (42%)
Query: 183 VVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTFYS 242
+ Y ++ Y V K F + E G P + G ++ Y + G L
Sbjct: 449 IAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSR 508
Query: 243 AVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGS 302
+KE G+ + ++ M++ K ++ M+ +G+ P Y +IS+F
Sbjct: 509 VMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMG 568
Query: 303 LLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCA 362
++ A++T EM+ P T+ +I K G +L ++ MR G +P+ +T
Sbjct: 569 NMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFN 628
Query: 363 SLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQL 422
L++ + KA+ + EM V+A+E Y +++ Y +G A + F +
Sbjct: 629 GLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNE 688
Query: 423 GLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSA 482
GL D TY A+ + S ++ AL V + M +RN+ + F Y +++ + + D+ A
Sbjct: 689 GLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEA 748
Query: 483 EGTFQTLAKTGL-PDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKI 541
Q + K G+ PD + ++ K +A I + V + + Y +++K
Sbjct: 749 ADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKG 808
Query: 542 YCKEGMVTDAEQFVEEMGKNGSLKDSKFI 570
+ + + A EEM G +K K +
Sbjct: 809 WARASLPEKALSCYEEMKAMG-IKPDKAV 836
|
|
| TAIR|locus:2056078 LOJ "LATERAL ORGAN JUNCTION" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 349 (127.9 bits), Expect = 4.8e-28, P = 4.8e-28
Identities = 156/707 (22%), Positives = 291/707 (41%)
Query: 213 GCEPDEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKV 272
G E A +L Y R + + + +R +VP N +LSSL + + +
Sbjct: 164 GFELTPRAFNYLLNAYIRNKRMDYAVDCFGLMVDRKVVPFVPYVNNVLSSLVRSNLIDEA 223
Query: 273 IDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISL 332
+++ +M+ GVA + T L++ + ++ EEA+K F + S G P+ + +S +
Sbjct: 224 KEIYNKMVLIGVAGDNVTTQLLMRASLRERKPEEAVKIFRRVMSRGAEPDGLLFSLAVQA 283
Query: 333 SIKHGKSDEALSLYKDMRSR-GLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAA 391
+ K AL L ++MR + G+ S T S++ + K N +A+ + EM F +
Sbjct: 284 ACKTPDLVMALDLLREMRGKLGVPASQETYTSVIVAFVKEGNMEEAVRVMDEMVGFGIPM 343
Query: 392 DEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVI 451
+ L+ Y K A F E+ GL D+ + M + + +EKA++
Sbjct: 344 SVIAATSLVNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMVEWFCKNMEMEKAIEFY 403
Query: 452 ELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLD 511
MKS + S M+Q + E +A F ++ + CN + L+ K
Sbjct: 404 MRMKSVRIAPSSVLVHTMIQGCLKAESPEAALEIFNDSFESWIAHGFMCNKIFLLFCKQG 463
Query: 512 LTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQ 571
+ A F+ + + ++ + Y ++M +C+ + A EM + G L+ + F
Sbjct: 464 KVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKG-LEPNNF-- 520
Query: 572 TFCKILHGGCTENAEFGDKFVASNQXXXXXXXXXXXXXXTDDN-------FSKREKILKL 624
T+ IL G +N + + + NQ T N SK +++L+
Sbjct: 521 TY-SILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTSKAKEMLQN 579
Query: 625 LLHTAGGS-SVVS--QLICKFIR----DGMRLTFKFLMKLGYILDDEVTASLIGSYGKHQ 677
L+ S S S +I F++ D T++ + + G + SLI + K
Sbjct: 580 LIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSN 639
Query: 678 KLKEAQDV-FKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAIS 736
++ A ++ + ++ K ++ID + K + Y L+ E G + +
Sbjct: 640 RMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYN 699
Query: 737 ILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVY 796
L++ N GK + A + D + D Y T I +L G ++ A+ +Y +L
Sbjct: 700 SLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNINLASDLYSELL-- 757
Query: 797 GRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGL 856
LG+ DE +M LV+ K G+ +AS + EM+++ + P +
Sbjct: 758 -----------------DLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDVTPNV 800
Query: 857 ISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTE 903
+ Y+ +I + G NE +L M G + + LV E
Sbjct: 801 LLYSTVIAGHHREGNLNEAFRLHDEMLEKGIVHDDTVFNLLVSGRVE 847
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| TAIR|locus:2054331 EMB2654 "EMBRYO DEFECTIVE 2654" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 351 (128.6 bits), Expect = 5.0e-34, Sum P(2) = 5.0e-34
Identities = 106/422 (25%), Positives = 187/422 (44%)
Query: 163 WRQATEFFAWMKLQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACG 222
WR A M L+ + P Y L+ G G + A + +M + G PD +
Sbjct: 194 WRWAMNLMDDM-LRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHN 252
Query: 223 TMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDK 282
+L Y + L+++ +K + P T FN ++ L K + +DL+ M +K
Sbjct: 253 IVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREK 312
Query: 283 GVA--PTDFTYTLVISSF-VKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKS 339
P T+T ++ + VKG + E F M + G P V+Y+ L+ HG S
Sbjct: 313 RAECRPDVVTFTSIMHLYSVKGEI-ENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMS 371
Query: 340 DEALSLYKDMRSRGLIPS--NYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYG 397
ALS+ D++ G+IP +YTC LL+ Y ++ KA +F M K + + V Y
Sbjct: 372 GTALSVLGDIKQNGIIPDVVSYTC--LLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYN 429
Query: 398 LLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSR 457
LI YG G +A + F + EQ G+ + + + S+ V+ +SR
Sbjct: 430 ALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSR 489
Query: 458 NMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLP-DAGSCNDMLNLYIKLDLTEKA 516
+ L+ AY + Y+ +L A +Q++ K + D+ + +++ ++ +A
Sbjct: 490 GINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEA 549
Query: 517 KGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKI 576
++ + + +E+Y SV+ Y K+G VT+AE +M G D + + +
Sbjct: 550 ISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPD---VIAYTSM 606
Query: 577 LH 578
LH
Sbjct: 607 LH 608
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| TAIR|locus:2027166 PTAC2 "plastid transcriptionally active 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 308 (113.5 bits), Expect = 2.3e-32, Sum P(2) = 2.3e-32
Identities = 98/456 (21%), Positives = 200/456 (43%)
Query: 117 YGKHVVAAIKAVRAMDGSRNVRVVMGSFVGKLSFREMCVVLKEQKG---WRQATEFFAWM 173
Y V + I + ++ ++ + F KLS + +V KE G W+++ F +M
Sbjct: 72 YSYDVESLINKLSSLPPRGSIARCLDIFKNKLSLNDFALVFKEFAGRGDWQRSLRLFKYM 131
Query: 174 KLQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGN 233
+ Q+ +P YTI++ L G+ G + + F EM G + ++ Y R G
Sbjct: 132 QRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGR 191
Query: 234 HKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRK-VIDLWRQMMDKGVAPTDFTYT 292
++ L +K I PS +N ++++ + + ++ L+ +M +G+ P TY
Sbjct: 192 YETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYN 251
Query: 293 LVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSR 352
++S+ L +EA F M G P+ TYS L+ K + ++ L +M S
Sbjct: 252 TLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASG 311
Query: 353 GLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDA 412
G +P + LL Y K+ + +A+ +F +M+ + Y +L+ ++G+ G Y+D
Sbjct: 312 GSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDV 371
Query: 413 QKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYI-VMLQ 471
++ F E + D TY + +V ++ + + M N+ Y ++
Sbjct: 372 RQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFA 431
Query: 472 CYV--MKEDLGSAEGTFQTLAKTGL-PDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQV 528
C + ED A Q + + P + + ++ + + L E+A +A +V
Sbjct: 432 CGKGGLHED---ARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEA--LVAFNTMHEV 486
Query: 529 DFDE--ELYRSVMKIYCKEGMVTDAEQFVEEMGKNG 562
+ E + S++ + + G+V ++E + + +G
Sbjct: 487 GSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSG 522
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O04647 | PP399_ARATH | No assigned EC number | 0.5788 | 0.9673 | 0.9701 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00014037001 | SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (1022 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1041 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-11 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-06 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 8e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-05 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 4e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 9e-15
Identities = 108/534 (20%), Positives = 208/534 (38%), Gaps = 110/534 (20%)
Query: 516 AKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCK 575
K H+ + D+ + V+ ++ K GM+ DA + +EM + + ++
Sbjct: 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM-------PERNLASWGT 194
Query: 576 ILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVV 635
I+ G + G+ A L ++ + R ++ L GS+
Sbjct: 195 IIGG----LVDAGNYR--------EAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242
Query: 636 -SQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCK 694
QL C ++K G + D V+ +LI Y K +++A+ VF
Sbjct: 243 GQQLHC------------CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD-----GM 285
Query: 695 PGKLVL--RSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAE 752
P K + SM+ YA G +E+ LY E G ++D SI++ + E A+
Sbjct: 286 PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK 345
Query: 753 IIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERM----------LV-----YG 797
+ LD VA + G++ A ++++RM L+ +G
Sbjct: 346 QAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHG 405
Query: 798 RGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQE-EGIKPGL 856
RG KA+EMF + G++ + ++ ++S +G + + +F M E IKP
Sbjct: 406 RG---TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462
Query: 857 ISYNIIINVYAAAGLYNEVEKLIQA------------------MQRD------------G 886
+ Y +I + GL +E +I+ + ++ G
Sbjct: 463 MHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG 522
Query: 887 FSPNSF-TYLSLVQAYTEAAKYSEAEETINSMQKQG--IPPSCTHV-----NHLLSAFSK 938
P Y+ L+ Y + + +EA + + +++++G + P+CT + +H S FS
Sbjct: 523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDH--SFFSG 580
Query: 939 AGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSE 992
L ++ +Y + ++K ++GY+ E L +V E E
Sbjct: 581 DRLHPQSREIYQK------------LDELMKEISEYGYVAEENELLPDVDEDEE 622
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 5e-12
Identities = 53/227 (23%), Positives = 97/227 (42%), Gaps = 8/227 (3%)
Query: 180 RPCVVAYTILLRLYGQVGKIKLAEQTFLEM-LEAG-CEPDEIACGTMLCTYARWGNHKAM 237
+P V + L+ GQ G + A EM E +PD I G ++ A G
Sbjct: 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598
Query: 238 LTFYSAVKERGIVPSTAVFNFMLSSLHKK---SYHRKVIDLWRQMMDKGVAPTDFTYTLV 294
Y + E I + V+ ++S +K + + D M KGV P + ++ +
Sbjct: 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD---DMKKKGVKPDEVFFSAL 655
Query: 295 ISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGL 354
+ L++A + + + G V+YS L+ +AL LY+D++S L
Sbjct: 656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL 715
Query: 355 IPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIR 401
P+ T +L++ + KAL + SEM++ + + + Y +L+
Sbjct: 716 RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 2e-11
Identities = 65/279 (23%), Positives = 125/279 (44%), Gaps = 31/279 (11%)
Query: 694 KPGKLVLRSMIDAYAKCG---KAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQ 750
KP ++V ++I A + G +A DV L +A D + + L+ N G+ ++
Sbjct: 539 KPDRVVFNALISACGQSGAVDRAFDV-LAEMKAETHPIDPDHITVGALMKACANAGQVDR 597
Query: 751 A----EIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKAL 806
A ++I + + ++ T+A N+C + G FA SIY+ M +K K
Sbjct: 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQK----GDWDFALSIYDDMK-----KKGVKPD 648
Query: 807 EMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVY 866
E+F +A LV G AG +A + + +++GIK G +SY+ ++
Sbjct: 649 EVFFSA--------------LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694
Query: 867 AAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSC 926
+ A + + +L + ++ P T +L+ A E + +A E ++ M++ G+ P+
Sbjct: 695 SNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754
Query: 927 THVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYR 965
+ LL A + + +++ GI P+L R
Sbjct: 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCR 793
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 7e-11
Identities = 42/182 (23%), Positives = 81/182 (44%)
Query: 186 YTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTFYSAVK 245
YTI + Q G A + +M + G +PDE+ ++ G+ +
Sbjct: 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676
Query: 246 ERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLE 305
++GI T ++ ++ + +K ++L+ + + PT T +I++ +G+ L
Sbjct: 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP 736
Query: 306 EALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLL 365
+AL+ +EMK G P +TYS L+ S + +D L L + G+ P+ C +
Sbjct: 737 KALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796
Query: 366 SL 367
L
Sbjct: 797 GL 798
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 1e-10
Identities = 89/414 (21%), Positives = 166/414 (40%), Gaps = 61/414 (14%)
Query: 125 IKAVRAMDG--SRNV---RVVMGSFVGKLSFREMCVVLKEQKGWRQATEFFAWMKLQLSY 179
I A R D RN+ ++G V ++RE A F M S
Sbjct: 175 IDARRLFDEMPERNLASWGTIIGGLVDAGNYRE-------------AFALFREMWEDGSD 221
Query: 180 RPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAG-CEPDEIACGTMLCTYARWGNHKAML 238
+ ++LR +G + +Q +L+ G ++C ++ Y++ G+ +
Sbjct: 222 AEPRT-FVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA-LIDMYSKCGDIEDAR 279
Query: 239 TFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSF 298
+ + E+ +T +N ML+ Y + + L+ +M D GV+ FT++++I F
Sbjct: 280 CVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335
Query: 299 VKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSN 358
+ +LLE A + + TGF + V + L+ L K G+ ++A +++ M + LI N
Sbjct: 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWN 395
Query: 359 YTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTF-A 417
+L++ Y + +KA+ +F M VA + V + ++ GL E + F +
Sbjct: 396 ----ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451
Query: 418 ETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIE---LMKSRNMW-------------- 460
+E + Y M ++ +++A +I + NMW
Sbjct: 452 MSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLE 511
Query: 461 LSRFA--------------YIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSC 500
L R A Y+V+L Y A +TL + GL +C
Sbjct: 512 LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPAC 565
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Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 1e-10
Identities = 65/331 (19%), Positives = 131/331 (39%), Gaps = 32/331 (9%)
Query: 695 PGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEII 754
P + ++ ++ + KCG D L+ E + + + ++ L + G + +A +
Sbjct: 156 PDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFAL 211
Query: 755 IHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARS 814
++D D + + ++A G G S G++L
Sbjct: 212 FREMWEDGSDAEPRTFVVMLRASAGLG------SARA-------GQQLHCC------VLK 252
Query: 815 LGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNE 874
G+ D L+ Y K G +A +F M E+ +++N ++ YA G E
Sbjct: 253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT----VAWNSMLAGYALHGYSEE 308
Query: 875 VEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLS 934
L M+ G S + FT+ +++ ++ A A++ + + G P L+
Sbjct: 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368
Query: 935 AFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEE-VRESSES 993
+SK G M +A V++ +I + ++ GY +HG + + +FE + E
Sbjct: 369 LYSKWGRMEDARNVFDRMPRKNLIS----WNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424
Query: 994 DKFIMSAAVHLYRYAGKEHEANDILDSMNSV 1024
+ A + RY+G + +I SM+
Sbjct: 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 2e-10
Identities = 61/283 (21%), Positives = 116/283 (40%), Gaps = 37/283 (13%)
Query: 186 YTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTFYSAVK 245
YT L+ + GK+ + F EM+ AG E + G ++ AR G Y ++
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534
Query: 246 ERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWR---------------------------- 277
+ + P VFN ++S+ + + D+
Sbjct: 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594
Query: 278 --------QMMDK-GVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQ 328
QM+ + + T YT+ ++S + + AL +++MK G P+EV +S
Sbjct: 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654
Query: 329 LISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFK 388
L+ ++ G D+A + +D R +G+ + +SL+ +N+ KAL L+ +++ K
Sbjct: 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714
Query: 389 VAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTY 431
+ LI + A + +E ++LGL + TY
Sbjct: 715 LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 3e-10
Identities = 76/382 (19%), Positives = 156/382 (40%), Gaps = 42/382 (10%)
Query: 640 CKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDV-FKAATVSCKPGKL 698
K IR+ TF LM V AS G + L+ Q+ KA CK
Sbjct: 429 AKLIRNPTLSTFNMLM--------SVCASSQDIDGALRVLRLVQEAGLKA---DCK---- 473
Query: 699 VLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQA----EII 754
+ ++I AK GK + ++ ++ E G + L++ G+ +A I+
Sbjct: 474 LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533
Query: 755 IHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERM-----------LVYG------ 797
N+ D V +N I A +G + A + M + G
Sbjct: 534 R----SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589
Query: 798 -RGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGL 856
++D+A E++ + + Y V+ + G A ++ +M+++G+KP
Sbjct: 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE 649
Query: 857 ISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINS 916
+ ++ +++V AG ++ +++Q ++ G + +Y SL+ A + A + +A E
Sbjct: 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED 709
Query: 917 MQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGY 976
++ + P+ + +N L++A + + +A V +E G+ P+ Y +L
Sbjct: 710 IKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD 769
Query: 977 IEEGINLFEEVRESSESDKFIM 998
+ G++L + +E +M
Sbjct: 770 ADVGLDLLSQAKEDGIKPNLVM 791
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 6e-10
Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 10/207 (4%)
Query: 808 MFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYA 867
++ S G D+ ++ + K G +A LF EM E L S+ II
Sbjct: 145 VYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLV 200
Query: 868 AAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCT 927
AG Y E L + M DG T++ +++A ++ + K G+
Sbjct: 201 DAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF 260
Query: 928 HVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEV 987
L+ +SK G + +A V++ + + +ML GY HGY EE + L+ E+
Sbjct: 261 VSCALIDMYSKCGDIEDARCVFDGMPEKTTV----AWNSMLAGYALHGYSEEALCLYYEM 316
Query: 988 RESSES-DKFIMSAAVHLY-RYAGKEH 1012
R+S S D+F S + ++ R A EH
Sbjct: 317 RDSGVSIDQFTFSIMIRIFSRLALLEH 343
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 2e-09
Identities = 62/304 (20%), Positives = 121/304 (39%), Gaps = 24/304 (7%)
Query: 164 RQATEFFAWMKLQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGT 223
R+A E F ++ + Y L+ + I+ + + + +G EPD+
Sbjct: 104 REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163
Query: 224 MLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKG 283
+L + + G + + ER + + ++ L +R+ L+R+M + G
Sbjct: 164 VLLMHVKCGMLIDARRLFDEMPERNLA----SWGTIIGGLVDAGNYREAFALFREMWEDG 219
Query: 284 VAPTDFTYTLVI-------SSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKH 336
T+ +++ S+ L LK TG + LI + K
Sbjct: 220 SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK-------TGVVGDTFVSCALIDMYSKC 272
Query: 337 GKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYS-KALSLFSEMEKFKVAADEVI 395
G ++A ++ M + + N A Y YS +AL L+ EM V+ D+
Sbjct: 273 GDIEDARCVFDGMPEKTTVAWNSMLAG-----YALHGYSEEALCLYYEMRDSGVSIDQFT 327
Query: 396 YGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMK 455
+ ++IRI+ +L L E A++ A + G D A+ ++ +E A +V + M
Sbjct: 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387
Query: 456 SRNM 459
+N+
Sbjct: 388 RKNL 391
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 3e-09
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 854 PGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAY 901
P +++YN +I+ Y G E KL M++ G PN +TY L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 1e-08
Identities = 22/46 (47%), Positives = 25/46 (54%)
Query: 286 PTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLIS 331
P TY +I + K +EEALK FNEMK G P TYS LI
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 3e-08
Identities = 62/322 (19%), Positives = 123/322 (38%), Gaps = 49/322 (15%)
Query: 149 SFREMCVVLKEQKGWRQATEFFAWMKLQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLE 208
F + C K R E F + KL + P + + +L+ + I A +
Sbjct: 411 KFFKAC------KKQRAVKEAFRFAKLIRN--PTLSTFNMLMSVCASSQDIDGALRVLRL 462
Query: 209 MLEAGCEPDEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSY 268
+ EAG + D T++ T A+ G AM + + G+ + F ++ +
Sbjct: 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522
Query: 269 HRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMK--STGFAPEEVTY 326
K + M K V P + +IS+ + ++ A EMK + P+ +T
Sbjct: 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITV 582
Query: 327 SQLISLSIKHGKSDEALSLYKDMRSRGL--IPSNYTCASLLSLYYKNENYSKALSLFSEM 384
L+ G+ D A +Y+ + + P YT A ++ + ++ ALS++ +M
Sbjct: 583 GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA--VNSCSQKGDWDFALSIYDDM 640
Query: 385 EKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNV 444
+K V DEV + L+ + G H + ++
Sbjct: 641 KKKGVKPDEVFFSALVDVAG---------------------------------H--AGDL 665
Query: 445 EKALDVIELMKSRNMWLSRFAY 466
+KA ++++ + + + L +Y
Sbjct: 666 DKAFEILQDARKQGIKLGTVSY 687
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 3e-08
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 181 PCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYAR 230
P VV Y L+ Y + GK++ A + F EM + G +P+ ++ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 4e-08
Identities = 134/649 (20%), Positives = 231/649 (35%), Gaps = 134/649 (20%)
Query: 304 LEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYK----DMRSRGLIPSNY 359
LE+ALK M+ +E Y L L +E + S G+ N
Sbjct: 67 LEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN- 125
Query: 360 TCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAET 419
++LS++ + A +F +M + + + V+ G Y K G +++A +
Sbjct: 126 ---AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGG----YAKAGYFDEALCLYHRM 178
Query: 420 EQLGLLSDEKTY------------LAMAQ---VHLTSRNVEKALDVIELMKSRNMWLSRF 464
G+ D T+ LA + H+ E +DV+
Sbjct: 179 LWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVN------------ 226
Query: 465 AYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIR 524
A I M YV D+ SA F + + D S N M++ Y + + +R
Sbjct: 227 ALITM---YVKCGDVVSARLVFDRMPRR---DCISWNAMISGYFENGECLEGLELFFTMR 280
Query: 525 KDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMG----KNGSLKDSKFIQTFCKI-LHG 579
+ VD D SV+ C ++ D E+ EM K G D + ++ L
Sbjct: 281 ELSVDPDLMTITSVI-SAC--ELLGD-ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336
Query: 580 GCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNF--SKREKILKLLLHTAGG------ 631
G AE F D ++ M+S Y + N K + L+
Sbjct: 337 GSWGEAE--KVFSRMETKDAVSWTAMISGY--EKNGLPDKALETYALMEQDNVSPDEITI 392
Query: 632 SSVVSQLICKFIRD-GMRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFK--- 687
+SV+S C D G++L + + G I V +LI Y K + + +A +VF
Sbjct: 393 ASVLSACACLGDLDVGVKL-HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP 451
Query: 688 ----------------------------AATVSCKPGKLVLRSMIDAYAK-----CGKAE 714
++ KP + L + + A A+ CGK
Sbjct: 452 EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEI 511
Query: 715 DVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCI 774
++L G D + L++ G+ A N F + + D V++N +
Sbjct: 512 HAHVL-----RTGIGFDGFLPNALLDLYVRCGRMNYA----WNQFNSH-EKDVVSWNILL 561
Query: 775 KAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKA 834
+ A +G+G A+E+FN G++ DE +++L+ ++
Sbjct: 562 TG--------YVA--------HGKG---SMAVELFNRMVESGVNPDEVTFISLLCACSRS 602
Query: 835 GKTHEASLLFSEMQEE-GIKPGLISYNIIINVYAAAGLYNEVEKLIQAM 882
G + F M+E+ I P L Y ++++ AG E I M
Sbjct: 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 1e-07
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 823 AYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYA 867
Y L+ Y K GK EA LF+EM++ GIKP + +Y+I+I+
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 2e-07
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 321 PEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYK 370
P+ VTY+ LI K GK +EAL L+ +M+ RG+ P+ YT + L+ K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 2e-07
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 251 PSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVK 300
P +N ++ KK + + L+ +M +G+ P +TY+++I K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 7e-07
Identities = 43/194 (22%), Positives = 87/194 (44%), Gaps = 5/194 (2%)
Query: 206 FLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHK 265
F M E +PD + +++ G+ + + V + G +V N ++
Sbjct: 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS 335
Query: 266 KSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVT 325
+ ++ +M K ++T +IS + K L ++AL+T+ M+ +P+E+T
Sbjct: 336 LGSWGEAEKVFSRMETKDAV----SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT 391
Query: 326 YSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEM- 384
+ ++S G D + L++ +GLI +L+ +Y K + KAL +F +
Sbjct: 392 IASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP 451
Query: 385 EKFKVAADEVIYGL 398
EK ++ +I GL
Sbjct: 452 EKDVISWTSIIAGL 465
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 1e-06
Identities = 56/274 (20%), Positives = 124/274 (45%), Gaps = 17/274 (6%)
Query: 290 TYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDM 349
TY ++ + + + + ++S+GF P++ ++++ + +K G +A L+ +M
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 350 RSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLY 409
R L + +++ NY +A +LF EM + A+ + +++R LG
Sbjct: 185 PERNL----ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240
Query: 410 EDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSR--NVEKALDVIELMKSRNMWLSRFAYI 467
Q+ + G++ D T+++ A + + S+ ++E A V + M + + A+
Sbjct: 241 RAGQQLHCCVLKTGVVGD--TFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWN 294
Query: 468 VMLQCYVMKEDLGSAEGTFQTLAKTGLP-DAGSCNDMLNLYIKLDLTEKAKGFIAHIRKD 526
ML Y + A + + +G+ D + + M+ ++ +L L E AK AH
Sbjct: 295 SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ--AHAGLI 352
Query: 527 QVDFDEELY--RSVMKIYCKEGMVTDAEQFVEEM 558
+ F ++ +++ +Y K G + DA + M
Sbjct: 353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 129/639 (20%), Positives = 241/639 (37%), Gaps = 92/639 (14%)
Query: 407 GLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAY 466
G E A K ++L + DE Y+A+ ++ R VE+ V S + L
Sbjct: 65 GQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLG 124
Query: 467 IVMLQCYVMKEDLGSAEGTFQTLAKT----------GLPDAGSCNDMLNLY-------IK 509
ML +V +L A F + + G AG ++ L LY ++
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR 184
Query: 510 LD-------------LTEKAKGFIAHIRKDQVDFDEEL--YRSVMKIYCKEGMVTDAEQF 554
D + + A+G H + F+ ++ +++ +Y K G V A
Sbjct: 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244
Query: 555 VEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQL----DLMALGLMLSL-- 608
+ M + + + I + + +G C E E F +L DLM + ++S
Sbjct: 245 FDRMPRRDCISWNAMISGYFE--NGECLEGLEL---FFTMRELSVDPDLMTITSVISACE 299
Query: 609 YLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDGM---------RLTFKFLMKLGY 659
L D+ + + A SV + LI ++ G R+ K +
Sbjct: 300 LLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSW-- 357
Query: 660 ILDDEVTASLIGSYGKHQKLKEAQDVFKAATV-SCKPGKLVLRSMIDAYAKCGKAEDVYL 718
++I Y K+ +A + + + P ++ + S++ A A G +
Sbjct: 358 -------TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410
Query: 719 LYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAML 778
L++ A +G V + L+ + ++A + HN + + V T I A L
Sbjct: 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD-----VISWTSIIAGL 465
Query: 779 GAGKLHFAASIYERMLVY----------------GRGRKLDKALEMFNTARSLGLSLDEK 822
F A I+ R ++ R L E+ G+ D
Sbjct: 466 RLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525
Query: 823 AYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAM 882
L+ Y + G+ + A F+ +++ ++S+NI++ Y A G + +L M
Sbjct: 526 LPNALLDLYVRCGRMNYAWNQFNSHEKD-----VVSWNILLTGYVAHGKGSMAVELFNRM 580
Query: 883 QRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQ-KQGIPPSCTHVNHLLSAFSKAGL 941
G +P+ T++SL+ A + + ++ E +SM+ K I P+ H ++ +AG
Sbjct: 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640
Query: 942 MAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEG 980
+ EA N+ I PD A + +L H ++E G
Sbjct: 641 LTEAYNFINK---MPITPDPAVWGALLNACRIHRHVELG 676
|
Length = 857 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.7 bits (114), Expect = 8e-06
Identities = 45/242 (18%), Positives = 86/242 (35%), Gaps = 4/242 (1%)
Query: 298 FVKGSLLEEALKTFNEM-KSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIP 356
L EAL+ E + + L +K G+ +EAL L + L+P
Sbjct: 33 LELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLP 92
Query: 357 SNYTCASLLSLYYK-NENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKT 415
+ L L + Y +AL L + D L + +LG YE+A +
Sbjct: 93 NLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALEL 152
Query: 416 FAETEQLG--LLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCY 473
+ + +L L + LA+ + E+AL+++E N A + + Y
Sbjct: 153 YEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLY 212
Query: 474 VMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEE 533
+ A ++ + +A + ++ L ++L E+A + + D
Sbjct: 213 LKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNL 272
Query: 534 LY 535
Sbjct: 273 GL 274
|
Length = 291 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 1e-05
Identities = 74/350 (21%), Positives = 135/350 (38%), Gaps = 46/350 (13%)
Query: 139 VVMGSFVGKLSFREMCVVLKEQKG-WRQATEFFAWMKLQLSYRPCVVAYTILLRLYGQVG 197
VV F +S + + G W +A + F+ M+ V++T ++ Y + G
Sbjct: 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKNG 368
Query: 198 KIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFN 257
A +T+ M + PDEI ++L A G+ + + + +G++ V N
Sbjct: 369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN 428
Query: 258 FMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKST 317
++ K K ++++ + +K V ++T +I+ + EAL F +M T
Sbjct: 429 ALIEMYSKCKCIDKALEVFHNIPEKDV----ISWTSIIAGLRLNNRCFEALIFFRQMLLT 484
Query: 318 GFAPEEVTYSQLISL-----SIKHGKSDEALSLYKDMRSRGLIPS------------NYT 360
P VT +S ++ GK A L + G +P+ NY
Sbjct: 485 -LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543
Query: 361 CAS-------------LLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLG 407
LL+ Y + S A+ LF+ M + V DEV + L+ + G
Sbjct: 544 WNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603
Query: 408 LYEDAQKTFAE-TEQLGLLSDEKTYLAMAQVHLTSR--NVEKALDVIELM 454
+ + F E+ + + K Y + V L R + +A + I M
Sbjct: 604 MVTQGLEYFHSMEEKYSITPNLKHYACV--VDLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 2e-05
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 930 NHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGY 971
N L+ + K G + EA +++NE GI P++ Y ++ G
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 12/178 (6%)
Query: 814 SLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYN 873
SLG+ L V F G+ A +F +M E L S+N+++ YA AG ++
Sbjct: 118 SLGVRLGNAMLSMFVRF----GELVHAWYVFGKMPERD----LFSWNVLVGGYAKAGYFD 169
Query: 874 EVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLL 933
E L M G P+ +T+ +++ + E + + G VN L+
Sbjct: 170 EALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229
Query: 934 SAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESS 991
+ + K G + A V++ I + M+ GY ++G EG+ LF +RE S
Sbjct: 230 TMYVKCGDVVSARLVFDRMPRRDCIS----WNAMISGYFENGECLEGLELFFTMRELS 283
|
Length = 857 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 4e-05
Identities = 37/168 (22%), Positives = 67/168 (39%), Gaps = 12/168 (7%)
Query: 328 QLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYY-KNENYSKALSLFSEMEK 386
L L ++ G +EA++ + ++ L P A L+ YY KAL++ +E
Sbjct: 538 ALAGLYLRTGNEEEAVAWLE--KAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD 595
Query: 387 FKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKT-YLAMAQVHLTSRNVE 445
+ E + +L R G A +F + L L D L +A + +N
Sbjct: 596 AAPDSPE-AWLMLGRAQLAAGDLNKAVSSF--KKLLALQPDSALALLLLADAYAVMKNYA 652
Query: 446 KALDVIE--LMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAK 491
KA+ ++ L + A I + Q + + SA+ ++L K
Sbjct: 653 KAITSLKRALELKPDNTE---AQIGLAQLLLAAKRTESAKKIAKSLQK 697
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 5e-05
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 184 VAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDE 218
V Y L+ + G+++ A + F EM E G EPD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 6e-05
Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 9/130 (6%)
Query: 863 INVYAAAGLYNEVEKLIQAMQ-RDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQG 921
I A G + E +L + ++ F+ + TY +LV+A + ++ G
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 922 IPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD--LACYRTMLKGYMDHGYIEE 979
P +N +L K G++ +A R+++E +P+ LA + T++ G +D G E
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDE------MPERNLASWGTIIGGLVDAGNYRE 207
Query: 980 GINLFEEVRE 989
LF E+ E
Sbjct: 208 AFALFREMWE 217
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 6e-05
Identities = 57/259 (22%), Positives = 93/259 (35%), Gaps = 36/259 (13%)
Query: 766 DTVAYNTCIKAMLGAGKLHFAASIYERML-------VY---------------GRGRKLD 803
D ++N + AG A +Y RML VY RGR++
Sbjct: 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210
Query: 804 KALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIII 863
+ F G LD L++ Y K G A L+F M IS+N +I
Sbjct: 211 AHVVRF------GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMI 260
Query: 864 NVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIP 923
+ Y G E +L M+ P+ T S++ A E + K G
Sbjct: 261 SGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFA 320
Query: 924 PSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINL 983
+ N L+ + G EA +V++ D + M+ GY +G ++ +
Sbjct: 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALET 376
Query: 984 FEEVRESSESDKFIMSAAV 1002
+ + + + S I A+V
Sbjct: 377 YALMEQDNVSPDEITIASV 395
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 7e-05
Identities = 37/227 (16%), Positives = 89/227 (39%), Gaps = 23/227 (10%)
Query: 181 PCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTF 240
P V ++ L+ + G G + A + + + G + ++ +++ + N K L
Sbjct: 647 PDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL 706
Query: 241 YSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVK 300
Y +K + P+ + N ++++L + + K +++ +M G+ P TY++++ + +
Sbjct: 707 YEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766
Query: 301 GSLLEEALKTFNEMKSTGFAPEEVTYSQLISL----------------SIKHGK------ 338
+ L ++ K G P V + L S G+
Sbjct: 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENK 826
Query: 339 -SDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEM 384
+ AL +Y++ S G +P+ + +L + + L +
Sbjct: 827 WTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENL 873
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 8e-05
Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 16/176 (9%)
Query: 704 IDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNL 763
+++ ++ G + +Y + +G D V S LV+ + G ++A I+ ++ + +
Sbjct: 621 VNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680
Query: 764 DLDTVAYNTCIKAMLGAGKLHFAASIYER----------------MLVYGRGRKLDKALE 807
L TV+Y++ + A A A +YE + G +L KALE
Sbjct: 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740
Query: 808 MFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIII 863
+ + + LGL + Y L+ + L S+ +E+GIKP L+ I
Sbjct: 741 VLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 1e-04
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 356 PSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIR 401
P T +L+ Y K +AL LF+EM+K + + Y +LI
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 2e-04
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 857 ISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNS 891
++YN +I+ AG E +L + M+ G P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 3e-04
Identities = 77/368 (20%), Positives = 137/368 (37%), Gaps = 101/368 (27%)
Query: 186 YTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWG------------- 232
++I++R++ ++ ++ A+Q ++ G D +A ++ Y++WG
Sbjct: 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387
Query: 233 ---------------NH----KAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVI 273
NH KA+ F + E G+ P+ F L+ L Y
Sbjct: 388 RKNLISWNALIAGYGNHGRGTKAVEMFERMIAE-GVAPNHVTF---LAVLSACRYSGLSE 443
Query: 274 DLWR--QMM--DKGVAPTDFTYTLVISSFVKGSLLEEA--------LKTFNEM------- 314
W Q M + + P Y +I + LL+EA K M
Sbjct: 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTA 503
Query: 315 ---------------KSTGFAPEEV-TYSQLISLSIKHGKSDEALSLYKDMRSRGL--IP 356
K G PE++ Y L++L G+ EA + + ++ +GL P
Sbjct: 504 CRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563
Query: 357 S---------NYTCASLLSLY-YKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKL 406
+ +++ S L+ E Y K L E+ ++ A+E LL +
Sbjct: 564 ACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEE--NELLPDVD--- 618
Query: 407 GLYEDAQKTFA--ETEQL----GLLS-DEKTYLAMAQVHLTSRNVEKALDVIELMKSRNM 459
ED +K +E+L GL++ E T L + Q H ++ K + I L+ R +
Sbjct: 619 ---EDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREI 675
Query: 460 WL---SRF 464
+ SRF
Sbjct: 676 VVRDASRF 683
|
Length = 697 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 4e-04
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 324 VTYSQLISLSIKHGKSDEALSLYKDMRSRGL 354
VTY+ LIS K GK +EAL L+K+M+ +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 5e-04
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 889 PNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSK 938
P+ TY +L+ Y + K EA + N M+K+GI P+ + L+ K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 5e-04
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 324 VTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPS 357
VTY+ LI K G+ +EAL L+K+M+ RG+ P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 5e-04
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 282 KGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMK 315
KG+ P TY +I + ++EA++ +EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 7e-04
Identities = 56/270 (20%), Positives = 103/270 (38%), Gaps = 47/270 (17%)
Query: 224 MLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKG 283
ML + R+G + + ER + +N ++ K Y + + L+ +M+ G
Sbjct: 127 MLSMFVRFGELVHAWYVFGKMPERDLFS----WNVLVGGYAKAGYFDEALCLYHRMLWAG 182
Query: 284 VAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEAL 343
V P +T+ V+ + L + + GF + + LI++ +K G A
Sbjct: 183 VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSAR 242
Query: 344 SLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKV-------------- 389
++ M R I N +++S Y++N + L LF M + V
Sbjct: 243 LVFDRMPRRDCISWN----AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC 298
Query: 390 ---------------------AADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDE 428
A D + LI++Y LG + +A+K F+ E +S
Sbjct: 299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVS-- 356
Query: 429 KTYLAMAQVHLTSRNVEKALDVIELMKSRN 458
+ AM + + +KAL+ LM+ N
Sbjct: 357 --WTAMISGYEKNGLPDKALETYALMEQDN 384
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 7e-04
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 289 FTYTLVISSFVKGSLLEEALKTFNEMKSTGFAP 321
TY +I K +EEAL+ F EMK G P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 9e-04
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 12/163 (7%)
Query: 827 LVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQ--- 883
++S Y + G+ E LF M+E + P L++ I +V +A L + E+L + M
Sbjct: 259 MISGYFENGECLEGLELFFTMRELSVDPDLMT---ITSVISACELLGD-ERLGREMHGYV 314
Query: 884 -RDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLM 942
+ GF+ + SL+Q Y + EAE+ + M+ + ++S + K GL
Sbjct: 315 VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTA----MISGYEKNGLP 370
Query: 943 AEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFE 985
+A Y + PD ++L G ++ G+ L E
Sbjct: 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.001
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 857 ISYNIIINVYAAAGLYNEVEKLIQAMQRDGF 887
++YN +I+ Y AG E +L + M+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.001
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 289 FTYTLVISSFVKGSLLEEALKTFNEMKSTGF 319
TY +IS + K LEEAL+ F EMK G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1041 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.95 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.82 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.82 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.82 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.82 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.82 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.81 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.81 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.81 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.79 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.76 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.72 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.71 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.64 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.62 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.62 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.61 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.6 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.59 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.58 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.57 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.56 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.56 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.52 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.52 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.52 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.51 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.5 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.49 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.49 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.49 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.46 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.44 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.43 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.42 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.4 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.39 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.39 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.38 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.37 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.37 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.36 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.36 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.35 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.33 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.32 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.32 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.32 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.32 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.31 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.29 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.28 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.26 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.26 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.23 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.23 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.21 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.16 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.16 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.16 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.16 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.12 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.1 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.1 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.08 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.07 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.07 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.05 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.03 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.01 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.0 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.98 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.94 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.92 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.92 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.91 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.9 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.81 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.79 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.74 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.73 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.73 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.69 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.69 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.66 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.66 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.65 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.64 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.62 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.61 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.59 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.58 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.58 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.58 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.56 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.5 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.5 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.49 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.48 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.48 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.47 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.45 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.42 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.41 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.41 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.4 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.36 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.36 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.35 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.34 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.33 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.3 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.25 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.18 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.18 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.16 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.12 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.1 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.03 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.98 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.91 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.9 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.89 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.88 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.84 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.84 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.77 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.73 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.72 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.72 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.7 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.64 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.61 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.6 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.6 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.6 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.6 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.59 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.59 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.56 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.55 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.54 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.53 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.5 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.5 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.49 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.49 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.46 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.46 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.45 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.43 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.43 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.41 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.41 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.4 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.39 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.38 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.38 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.36 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.36 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.35 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.34 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.33 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.28 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.27 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.27 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.26 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.25 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.23 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.22 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.2 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.18 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.14 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.11 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.1 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.09 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.06 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.03 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.03 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.03 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.02 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.01 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.97 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.94 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.91 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.9 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.89 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.86 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.83 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.8 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.79 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.79 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.74 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.73 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.58 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.58 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.52 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.47 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.42 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.42 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.41 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.4 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.38 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.35 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.27 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.26 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.25 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.18 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.17 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.11 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.08 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.07 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.04 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.02 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.0 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.99 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.95 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.91 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.79 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.72 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 95.59 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.57 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.55 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.48 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.45 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.44 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.4 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.38 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.3 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.27 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.24 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.22 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.83 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.74 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.71 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.7 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.6 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 94.52 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.52 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.47 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.46 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.39 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.39 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.37 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.19 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.17 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.04 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.89 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.88 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.73 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 93.63 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.54 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.41 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.38 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.38 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.35 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.29 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.06 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.99 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.73 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.72 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.45 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.18 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.14 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.04 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.73 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.42 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.35 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.29 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 91.28 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.25 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.74 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 90.69 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.38 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 89.99 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.72 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.58 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.48 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.48 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 89.36 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.35 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.84 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.44 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.33 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.88 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 87.56 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 87.33 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 87.31 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 86.57 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 86.33 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 85.82 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.8 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.52 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 83.89 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 83.87 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 83.76 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 83.72 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.67 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 83.56 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 82.99 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.87 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 82.85 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.45 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.29 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 81.7 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 81.29 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 81.25 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 80.86 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 80.59 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 80.58 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 80.36 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 80.18 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 80.12 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 80.09 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-82 Score=772.69 Aligned_cols=686 Identities=19% Similarity=0.215 Sum_probs=612.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001632 180 RPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFM 259 (1041)
Q Consensus 180 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 259 (1041)
.++..+++.++.+|++.|++++|.++|++|.+.|+.|+..+|..++.+|.+.+.++.+..++..+.+.+..++...+|.+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 45667788899999999999999999999998888889889999999988888899999999988888888888888999
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 001632 260 LSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKS 339 (1041)
Q Consensus 260 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 339 (1041)
+.+|++.|+++.|.++|++|.+ ||..+||.+|.+|++.|++++|.++|++|...|+.||..||+.++.+|+..+++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 9999999999999999988853 678889999999999999999999999998888889999999999998888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001632 340 DEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAET 419 (1041)
Q Consensus 340 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 419 (1041)
+.+.+++..|.+.|+.||..+|+.||.+|++.|+++.|.++|++|.+ +|..+|+.+|.+|++.|++++|.++|.+|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M 279 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTM 279 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 88999999888888888988999999999999999999999988864 57888999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhH
Q 001632 420 EQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGS 499 (1041)
Q Consensus 420 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 499 (1041)
.+.|+.||..||+.++.++++.|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. ++..+
T Consensus 280 ~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s 356 (857)
T PLN03077 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVS 356 (857)
T ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeee
Confidence 988899999999999999999999999999999998889999999999999999999999999999988753 78889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCHHHHHHHHHHHhc
Q 001632 500 CNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHG 579 (1041)
Q Consensus 500 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 579 (1041)
|+.++.+|.+.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.|.+.|
T Consensus 357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g----------------- 419 (857)
T PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG----------------- 419 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC-----------------
Confidence 999999999999999999999999999999999999999999999999999999999887774
Q ss_pred cCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHhhcCCchhHHHHHHHHHHHcCCHHHHHHHHHcCC
Q 001632 580 GCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDGMRLTFKFLMKLGY 659 (1041)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 659 (1041)
+
T Consensus 420 -------------------------------------------------------------------------------~ 420 (857)
T PLN03077 420 -------------------------------------------------------------------------------L 420 (857)
T ss_pred -------------------------------------------------------------------------------C
Confidence 4
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001632 660 ILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILV 739 (1041)
Q Consensus 660 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~ 739 (1041)
.++..++++++++|+++|++++|.++|+.+. .+|..+|++++.+|++.|+.++|+.+|++|.. ++.||..||+.++
T Consensus 421 ~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL 496 (857)
T PLN03077 421 ISYVVVANALIEMYSKCKCIDKALEVFHNIP---EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAAL 496 (857)
T ss_pred CcchHHHHHHHHHHHHcCCHHHHHHHHHhCC---CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHH
Confidence 5556677788888888888888888888876 46778888888888888888888888888875 4788888888888
Q ss_pred HHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCC
Q 001632 740 NTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSL 819 (1041)
Q Consensus 740 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 819 (1041)
.+|++.|. ++.+.+++..+.+.|+.+
T Consensus 497 ~a~~~~g~------------------------------------------------------l~~~~~i~~~~~~~g~~~ 522 (857)
T PLN03077 497 SACARIGA------------------------------------------------------LMCGKEIHAHVLRTGIGF 522 (857)
T ss_pred HHHhhhch------------------------------------------------------HHHhHHHHHHHHHhCCCc
Confidence 88777664 444555555666777788
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001632 820 DEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQ 899 (1041)
Q Consensus 820 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 899 (1041)
|..++|+|+++|+++|++++|.++|+++ .||.++||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 597 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Confidence 8999999999999999999999999988 47999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHH-HCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 001632 900 AYTEAAKYSEAEETINSMQ-KQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIE 978 (1041)
Q Consensus 900 ~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 978 (1041)
+|++.|++++|.++|+.|. +.|+.|+..+|+.++++|++.|++++|.+++++| .+.||..+|++|+.+|..+|+.+
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e 674 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVE 674 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChH
Confidence 9999999999999999999 6899999999999999999999999999999998 37899999999999999999999
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCc---cchhcccccccC
Q 001632 979 EGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRI---PFMKNLEVGSKI 1038 (1041)
Q Consensus 979 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~---~~~~~~~~~~~~ 1038 (1041)
.|....+++.+..|.++..|..++++|...|+|++|.++++.|++.|+ |.+.+++++.++
T Consensus 675 ~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~ 737 (857)
T PLN03077 675 LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKV 737 (857)
T ss_pred HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEE
Confidence 999999999999999999999999999999999999999999999998 578888888765
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-78 Score=733.04 Aligned_cols=748 Identities=18% Similarity=0.214 Sum_probs=669.6
Q ss_pred CCHHHHHHHHHhhcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001632 148 LSFREMCVVLKEQKGWRQATEFFAWMKLQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCT 227 (1041)
Q Consensus 148 ~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 227 (1041)
.++..++..+.+.|++++|..+|+.|.. .+..|+..+|..++.+|.+.+.++.|.+++..+.+.+..++...+|++|.+
T Consensus 52 ~~~n~~i~~l~~~g~~~~A~~l~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~ 130 (857)
T PLN03077 52 HDSNSQLRALCSHGQLEQALKLLESMQE-LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSM 130 (857)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHh-cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHH
Confidence 4456778899999999999999999975 478899999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 001632 228 YARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEA 307 (1041)
Q Consensus 228 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 307 (1041)
|++.|+.+.|+.+|++|. .||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|+..+++..+
T Consensus 131 ~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 131 FVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 999999999999999997 4788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001632 308 LKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKF 387 (1041)
Q Consensus 308 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 387 (1041)
.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|.+|.+.
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~ 282 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMREL 282 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999996 468889999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 001632 388 KVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYI 467 (1041)
Q Consensus 388 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 467 (1041)
|+.||..+|+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|+.|. .||..+|+
T Consensus 283 g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n 358 (857)
T PLN03077 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWT 358 (857)
T ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999996 46789999
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 001632 468 VMLQCYVMKEDLGSAEGTFQTLAKTGL-PDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEG 546 (1041)
Q Consensus 468 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 546 (1041)
.++.+|++.|++++|.++|++|.+.+. ||..+|+.++.+|++.|+++.|.++++.|.+.|+.++..+|+.|+.+|++.|
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 999999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHh
Q 001632 547 MVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLL 626 (1041)
Q Consensus 547 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 626 (1041)
++++|.++|++|.+.
T Consensus 439 ~~~~A~~vf~~m~~~----------------------------------------------------------------- 453 (857)
T PLN03077 439 CIDKALEVFHNIPEK----------------------------------------------------------------- 453 (857)
T ss_pred CHHHHHHHHHhCCCC-----------------------------------------------------------------
Confidence 999999999988643
Q ss_pred hcCCchhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 001632 627 HTAGGSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDA 706 (1041)
Q Consensus 627 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 706 (1041)
|..++++++.+|++.|+.++|..+|++|..+..||..+|+.++.+
T Consensus 454 -----------------------------------d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a 498 (857)
T PLN03077 454 -----------------------------------DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSA 498 (857)
T ss_pred -----------------------------------CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHH
Confidence 345778888999999999999999999888889999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHH
Q 001632 707 YAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFA 786 (1041)
Q Consensus 707 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 786 (1041)
|++.|..+.+.+++..+.+.|+.+|..++++++..|++.|++++|..+|..+ .+|.++||++|.+|.+
T Consensus 499 ~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~------- 566 (857)
T PLN03077 499 CARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVA------- 566 (857)
T ss_pred HhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999886 6899999999997554
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCcccHHHHHHH
Q 001632 787 ASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQ-EEGIKPGLISYNIIINV 865 (1041)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~ 865 (1041)
.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.++++
T Consensus 567 ------------~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~ 634 (857)
T PLN03077 567 ------------HGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL 634 (857)
T ss_pred ------------cCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 55666677777777899999999999999999999999999999999999 67999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHH
Q 001632 866 YAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEA 945 (1041)
Q Consensus 866 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 945 (1041)
|++.|++++|.+++++|. +.||..+|++|+.+|...|+.+.|+...+++.+.. |.+...|..|...|+..|+|++|
T Consensus 635 l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~-p~~~~~y~ll~n~ya~~g~~~~a 710 (857)
T PLN03077 635 LGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELD-PNSVGYYILLCNLYADAGKWDEV 710 (857)
T ss_pred HHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCcchHHHHHHHHHHCCChHHH
Confidence 999999999999999983 78999999999999999999999999999999853 44556788888999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHH----HHH----hcCChHHHHH----HHHHHHh-ccCChHH-HH-----HHHHHHHH
Q 001632 946 TRVYNESLAAGIIPDLACYRTMLK----GYM----DHGYIEEGIN----LFEEVRE-SSESDKF-IM-----SAAVHLYR 1006 (1041)
Q Consensus 946 ~~~~~~~~~~~~~p~~~~~~~l~~----~~~----~~g~~~~A~~----~~~~~~~-~~~~~~~-~~-----~~l~~~~~ 1006 (1041)
.++.+.|.+.|+.+++.+...-+. .+. .+-+.++-.. +..++.+ +..||.. .+ ..--.++.
T Consensus 711 ~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~~~~~ 790 (857)
T PLN03077 711 ARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCG 790 (857)
T ss_pred HHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccccHHHHHHHHHh
Confidence 999999999999987754322111 111 1112233333 3333433 2333321 11 11223566
Q ss_pred hcCChhHHHHHHHHhhccCccchhcccccc
Q 001632 1007 YAGKEHEANDILDSMNSVRIPFMKNLEVGS 1036 (1041)
Q Consensus 1007 ~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~ 1036 (1041)
|.-+..-|..++..=....|.+.|||+||.
T Consensus 791 hse~la~a~~l~~~~~~~~i~i~knlr~c~ 820 (857)
T PLN03077 791 HSERLAIAFGLINTVPGMPIWVTKNLYMCE 820 (857)
T ss_pred ccHHHHHHHhhhcCCCCCeEEEeCCCEeCc
Confidence 777788888888876666678999999986
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-65 Score=599.01 Aligned_cols=537 Identities=15% Similarity=0.221 Sum_probs=294.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 001632 217 DEIACGTMLCTYARWGNHKAMLTFYSAVKERGI-VPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVI 295 (1041)
Q Consensus 217 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 295 (1041)
+...|..++..|++.|++++|+++|++|.+.|+ .++..+++.++.+|.+.|.+++|..+|+.|.. |+..+|+.++
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL 444 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLM 444 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHH
Confidence 344444555555555555555555555555443 23444444445555555555555555544432 4455555555
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 001632 296 SSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYS 375 (1041)
Q Consensus 296 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 375 (1041)
.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001632 376 KALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQ--LGLLSDEKTYLAMAQVHLTSRNVEKALDVIEL 453 (1041)
Q Consensus 376 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 453 (1041)
+|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|+.
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555543 34444555555555555555555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 001632 454 MKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEE 533 (1041)
Q Consensus 454 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 533 (1041)
|.+.++.|+..+|+.++.+|++. |++++|.++|++|.+.|+.||..
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~----------------------------------G~~deAl~lf~eM~~~Gv~PD~~ 650 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQK----------------------------------GDWDFALSIYDDMKKKGVKPDEV 650 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhc----------------------------------CCHHHHHHHHHHHHHcCCCCCHH
Confidence 54444444444444444444444 44444444444444444555555
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcc
Q 001632 534 LYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDD 613 (1041)
Q Consensus 534 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (1041)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G--------------------------------------------------- 679 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQG--------------------------------------------------- 679 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC---------------------------------------------------
Confidence 55555555555555555555555544442
Q ss_pred cHHHHHHHHHHHhhcCCchhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh-cC
Q 001632 614 NFSKREKILKLLLHTAGGSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAAT-VS 692 (1041)
Q Consensus 614 ~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~ 692 (1041)
+.|+..+|++++.+|+++|++++|.++|+.|. .+
T Consensus 680 ---------------------------------------------~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g 714 (1060)
T PLN03218 680 ---------------------------------------------IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714 (1060)
T ss_pred ---------------------------------------------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 22333344444444444555555555555443 34
Q ss_pred CCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHH
Q 001632 693 CKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNT 772 (1041)
Q Consensus 693 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 772 (1041)
..||..+||.||.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|++++|..++..|.+.|+.||..+|+.
T Consensus 715 ~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tyns 794 (1060)
T PLN03218 715 LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC 794 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 46778888888888999999999999999998888889999999999999999999999999999988899999989988
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHh------ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001632 773 CIKAMLGAGKLHFAASIYERMLVYG------RGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSE 846 (1041)
Q Consensus 773 li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 846 (1041)
++..|. +++++|.++.+.+..+. ..+..+.|..+|++|.+.|+.||..+|+.++.++++.+..+.+..+++.
T Consensus 795 LIglc~--~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~ 872 (1060)
T PLN03218 795 ITGLCL--RRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIEN 872 (1060)
T ss_pred HHHHHH--HHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 886543 23444444443333221 1112234555555555555555555555555544445555555555555
Q ss_pred HHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 001632 847 MQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNS 891 (1041)
Q Consensus 847 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 891 (1041)
|...+..|+..+|+++++++.+. .++|..+|++|.+.|+.|+.
T Consensus 873 m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 873 LGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred hccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 54444444455555555544211 23455555555555555544
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-64 Score=594.82 Aligned_cols=422 Identities=13% Similarity=0.226 Sum_probs=291.1
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001632 150 FREMCVVLKEQKGWRQATEFFAWMKLQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYA 229 (1041)
Q Consensus 150 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 229 (1041)
+..++..|.+.|++++|+++|++|....-..++...++.++.+|.+.|.+++|.++|+.|.. ||..+|+.+|.+|+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCA 448 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHH
Confidence 34444555556677777777777765433455666666666777777777777776666652 66677777777777
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 001632 230 RWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALK 309 (1041)
Q Consensus 230 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 309 (1041)
+.|++++|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 77777777777777777777777777777777777777777777777777766767777777777777777777777777
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001632 310 TFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRS--RGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKF 387 (1041)
Q Consensus 310 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 387 (1041)
+|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 529 lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 777777667677777777777777777777777777777754 456667777777777777777777777777777777
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 001632 388 KVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYI 467 (1041)
Q Consensus 388 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 467 (1041)
|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++++.|.+.|+.|+..+|+
T Consensus 609 gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyn 688 (1060)
T PLN03218 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS 688 (1060)
T ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 76677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 001632 468 VMLQCYVMKEDLGSAEGTFQTLAKTGL-PDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEG 546 (1041)
Q Consensus 468 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 546 (1041)
.|+.+|++.|++++|.++|++|.+.+. |+..+|+.|+.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|
T Consensus 689 sLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G 768 (1060)
T PLN03218 689 SLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 777777777777777777777766665 6667777777777777777777777777766667777777777777777777
Q ss_pred ChhhHHHHHHHHhhCCCCCCHHHHHHHHH
Q 001632 547 MVTDAEQFVEEMGKNGSLKDSKFIQTFCK 575 (1041)
Q Consensus 547 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 575 (1041)
+++.|.++|.+|.+.|+.||..+++.++.
T Consensus 769 ~le~A~~l~~~M~k~Gi~pd~~tynsLIg 797 (1060)
T PLN03218 769 DADVGLDLLSQAKEDGIKPNLVMCRCITG 797 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 77777777777766666666555555443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-58 Score=544.21 Aligned_cols=484 Identities=20% Similarity=0.277 Sum_probs=400.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001632 392 DEVIYGLLIRIYGKLGLYEDAQKTFAETEQLG-LLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVML 470 (1041)
Q Consensus 392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 470 (1041)
+..+|+.+|..|.+.|++++|.++|+.|...+ ..||..+|+.++.++.+.++.+.+..++..|.+.|+.||..+|+.|+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 44456666666666666666666666666543 45666666666666666666666666666666666666666666666
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 001632 471 QCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTD 550 (1041)
Q Consensus 471 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 550 (1041)
.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|..+.
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 666666666666666666643 67777777788888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHhhcCC
Q 001632 551 AEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAG 630 (1041)
Q Consensus 551 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 630 (1041)
+.+++..+.+.
T Consensus 243 ~~~l~~~~~~~--------------------------------------------------------------------- 253 (697)
T PLN03081 243 GQQLHCCVLKT--------------------------------------------------------------------- 253 (697)
T ss_pred HHHHHHHHHHh---------------------------------------------------------------------
Confidence 88887776665
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhc
Q 001632 631 GSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKC 710 (1041)
Q Consensus 631 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 710 (1041)
|+.+|..++++++++|+++|++++|.++|+.+. .+|+.+||+|+.+|++.
T Consensus 254 ---------------------------g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~ 303 (697)
T PLN03081 254 ---------------------------GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALH 303 (697)
T ss_pred ---------------------------CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhC
Confidence 344555667777777788888888888887776 46788888888888888
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 001632 711 GKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIY 790 (1041)
Q Consensus 711 g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 790 (1041)
|++++|.++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 304 g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~------------------------------------------- 340 (697)
T PLN03081 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL------------------------------------------- 340 (697)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc-------------------------------------------
Confidence 8888888888888888888888888888888777664
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcC
Q 001632 791 ERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAG 870 (1041)
Q Consensus 791 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 870 (1041)
+++|.+++..+.+.|+.||..+|++|+++|+++|++++|.++|++|. +||.++||+||.+|++.|
T Consensus 341 -----------~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G 405 (697)
T PLN03081 341 -----------LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHG 405 (697)
T ss_pred -----------hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcC
Confidence 44455555666677788999999999999999999999999999996 479999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 001632 871 LYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQK-QGIPPSCTHVNHLLSAFSKAGLMAEATRVY 949 (1041)
Q Consensus 871 ~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 949 (1041)
+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++
T Consensus 406 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~ 485 (697)
T PLN03081 406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 689999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCc---
Q 001632 950 NESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRI--- 1026 (1041)
Q Consensus 950 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~--- 1026 (1041)
++| ++.|+..+|++|+.+|..+|+++.|..+++++.+..|.+..+|..++++|++.|++++|.+++++|.+.|+
T Consensus 486 ~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 486 RRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 876 58899999999999999999999999999999988888889999999999999999999999999999998
Q ss_pred cchhcccccccC
Q 001632 1027 PFMKNLEVGSKI 1038 (1041)
Q Consensus 1027 ~~~~~~~~~~~~ 1038 (1041)
+.+.+++++.++
T Consensus 563 ~g~s~i~~~~~~ 574 (697)
T PLN03081 563 PACTWIEVKKQD 574 (697)
T ss_pred CCeeEEEECCeE
Confidence 566677776653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-57 Score=533.41 Aligned_cols=397 Identities=17% Similarity=0.259 Sum_probs=284.0
Q ss_pred CHHHHHHHHHhhcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001632 149 SFREMCVVLKEQKGWRQATEFFAWMKLQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTY 228 (1041)
Q Consensus 149 ~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 228 (1041)
++..++..+.+.|++++|+++|++|....++.|+..+|+.++.+|++.++++.|.+++..|.+.|+.||..+||.++.+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 44566667777777777777777777655566777777777777777777777777777777777777777777777777
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 001632 229 ARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEAL 308 (1041)
Q Consensus 229 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 308 (1041)
++.|++++|.++|++|.+ ||..+||.++.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|++.|..+.+.
T Consensus 169 ~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred hcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 777777777777777753 6777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001632 309 KTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFK 388 (1041)
Q Consensus 309 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 388 (1041)
+++..+.+.|+.||..+|++||.+|++.|++++|.++|++|.. +|..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 7777777777777777777777777777777777777777743 466677777777777777777777777777777
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001632 389 VAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIV 468 (1041)
Q Consensus 389 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 468 (1041)
+.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|+.|.+ +|..+|+.
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~ 396 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNA 396 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777776643 45566666
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcC
Q 001632 469 MLQCYVMKEDLGSAEGTFQTLAKTGL-PDAGSCNDMLNLYIKLDLTEKAKGFIAHIRK-DQVDFDEELYRSVMKIYCKEG 546 (1041)
Q Consensus 469 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~g 546 (1041)
++.+|++.|+.++|.++|++|.+.|. ||..+|+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++..|++.|
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 66666666666666666666666555 5666666666666666666666666666643 355566666666666666666
Q ss_pred ChhhHHHHHHH
Q 001632 547 MVTDAEQFVEE 557 (1041)
Q Consensus 547 ~~~~A~~~~~~ 557 (1041)
++++|.+++++
T Consensus 477 ~~~eA~~~~~~ 487 (697)
T PLN03081 477 LLDEAYAMIRR 487 (697)
T ss_pred CHHHHHHHHHH
Confidence 66666555543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-45 Score=460.13 Aligned_cols=819 Identities=12% Similarity=0.041 Sum_probs=611.3
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 001632 153 MCVVLKEQKGWRQATEFFAWMKLQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWG 232 (1041)
Q Consensus 153 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 232 (1041)
+..++..+|++++|...|+.+.... +++......+.+++...|++++|...+.+........+...+..+...+...|
T Consensus 62 l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (899)
T TIGR02917 62 LGKIYLALGDYAAAEKELRKALSLG--YPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLG 139 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC--CChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcC
Confidence 4456677788888888887775432 23344455666777777888888777766543333344566677777777778
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 001632 233 NHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFN 312 (1041)
Q Consensus 233 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 312 (1041)
++++|...|+++.+.. +.+...+..+...+...|++++|.++++++.... +.+...+..+...+...|++++|...|+
T Consensus 140 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 217 (899)
T TIGR02917 140 QLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYR 217 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 8888888888777654 3455667777777777888888888887776642 4456677777777777888888888888
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 001632 313 EMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAAD 392 (1041)
Q Consensus 313 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 392 (1041)
+..+.+ +.+..++..++..+...|++++|...++.+.+.... +...+......+...|++++|...++++.+.+.. +
T Consensus 218 ~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~ 294 (899)
T TIGR02917 218 KAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-Y 294 (899)
T ss_pred HHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-c
Confidence 777664 335666777777777788888888888777665432 2223333344455677788888888777765422 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001632 393 EVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQC 472 (1041)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 472 (1041)
...+..+...+...|++++|...|..+.+... .+...+..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 295 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 372 (899)
T TIGR02917 295 LPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEA 372 (899)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 33444455666777888888888877776532 345566677777777888888888887776654 3455667777777
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 001632 473 YVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAE 552 (1041)
Q Consensus 473 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 552 (1041)
+...|++++|.+.|+++.+..+.+...+..+..++...|++++|...++.+.+.... .......++..+.+.|++++|.
T Consensus 373 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 451 (899)
T TIGR02917 373 YLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKAL 451 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHH
Confidence 778888888888888777776666777777777777888888888888777665322 2344555667777788888888
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHhhcC-Cc
Q 001632 553 QFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTA-GG 631 (1041)
Q Consensus 553 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~ 631 (1041)
.++..+.... | .+...+..++..|...|++++|.+.+++.++.. .+
T Consensus 452 ~~~~~~~~~~--~-------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 498 (899)
T TIGR02917 452 AAAKKLEKKQ--P-------------------------------DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDF 498 (899)
T ss_pred HHHHHHHHhC--C-------------------------------CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc
Confidence 8877776541 1 122344455566666777888888888877653 34
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHc---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 001632 632 SSVVSQLICKFIRDGMRLTFKFLMKL---GYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYA 708 (1041)
Q Consensus 632 ~~~~~~li~~~~~~g~~~~a~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 708 (1041)
...+..++..+...|+.++|....+. ..+.+..++..+...+.+.|+.++|..+++.+....+.+...+..++..|.
T Consensus 499 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 578 (899)
T TIGR02917 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYL 578 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHH
Confidence 44666677777788888877773322 123456677777777888888888888888866556667777777888888
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 001632 709 KCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAAS 788 (1041)
Q Consensus 709 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 788 (1041)
..|++++|..+++++.... ..+..+|..+...+...|++++|...++.+.+..+ .+...+..+...+...|++++|..
T Consensus 579 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 656 (899)
T TIGR02917 579 GKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAIT 656 (899)
T ss_pred HCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888877653 33566777778888888888888888887776553 244567777777888888888888
Q ss_pred HHHHHH---------------HHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001632 789 IYERML---------------VYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIK 853 (1041)
Q Consensus 789 ~~~~~~---------------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 853 (1041)
.++++. .+...|++++|..+++.+.+.. +.+...+..+...|.+.|++++|...|+++.+. .
T Consensus 657 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~ 733 (899)
T TIGR02917 657 SLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--A 733 (899)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 887765 5677889999999999998876 567788889999999999999999999999987 4
Q ss_pred CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHH
Q 001632 854 PGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLL 933 (1041)
Q Consensus 854 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 933 (1041)
|+..++..++.++.+.|++++|.+.++++.+. .+.+...+..++..|...|++++|.++|+++.+.+ +++...++.++
T Consensus 734 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~ 811 (899)
T TIGR02917 734 PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLA 811 (899)
T ss_pred CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 56677888999999999999999999999886 56788889999999999999999999999999875 66778999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhH
Q 001632 934 SAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHE 1013 (1041)
Q Consensus 934 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~e 1013 (1041)
..+...|+ .+|+++++++++. .+.++.++..+..++...|++++|+.+++++.+..|.++.++..++.+|.+.|++++
T Consensus 812 ~~~~~~~~-~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 889 (899)
T TIGR02917 812 WLYLELKD-PRALEYAEKALKL-APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAE 889 (899)
T ss_pred HHHHhcCc-HHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH
Confidence 99999999 8899999999885 344677888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 001632 1014 ANDILDSMNS 1023 (1041)
Q Consensus 1014 A~~~~~~~~~ 1023 (1041)
|.+++++|.+
T Consensus 890 A~~~~~~~~~ 899 (899)
T TIGR02917 890 ARKELDKLLN 899 (899)
T ss_pred HHHHHHHHhC
Confidence 9999999863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=452.20 Aligned_cols=823 Identities=14% Similarity=0.087 Sum_probs=701.9
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 001632 153 MCVVLKEQKGWRQATEFFAWMKLQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWG 232 (1041)
Q Consensus 153 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 232 (1041)
....+..+|+++.|...|+..... .+.+...+..+..++.+.|++++|...++.+.+.+. ++...+..+..++...|
T Consensus 28 ~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~g 104 (899)
T TIGR02917 28 AAKSYLQKNKYKAAIIQLKNALQK--DPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGY-PKNQVLPLLARAYLLQG 104 (899)
T ss_pred HHHHHHHcCChHhHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-ChhhhHHHHHHHHHHCC
Confidence 345677899999999999988754 345667788899999999999999999999998765 34556677888999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 001632 233 NHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFN 312 (1041)
Q Consensus 233 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 312 (1041)
++++|...+........+.+...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.++++
T Consensus 105 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 183 (899)
T TIGR02917 105 KFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDEARALID 183 (899)
T ss_pred CHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999876544445566788888899999999999999999998764 3456788899999999999999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 001632 313 EMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAAD 392 (1041)
Q Consensus 313 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 392 (1041)
++.+.+ +++...|..+...+...|++++|...|++..+.+. .+..++..++..+...|++++|...++.+.+.... +
T Consensus 184 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~ 260 (899)
T TIGR02917 184 EVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRP-NNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-S 260 (899)
T ss_pred HHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C
Confidence 998874 45677888889999999999999999999987643 36778888999999999999999999999886433 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001632 393 EVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQC 472 (1041)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 472 (1041)
...+......+...|++++|...|+++.+.+.. +...+..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 261 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 338 (899)
T TIGR02917 261 PLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASI 338 (899)
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 344444555667889999999999999876532 23445556777889999999999999998764 3456677888899
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 001632 473 YVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAE 552 (1041)
Q Consensus 473 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 552 (1041)
+...|++++|...+..+....+.+...+..+...+.+.|++++|..+|+++.+.. +.+...+..+..++...|++++|.
T Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 417 (899)
T TIGR02917 339 QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAI 417 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHH
Confidence 9999999999999999998888888999999999999999999999999998763 346777888899999999999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHhhcC-Cc
Q 001632 553 QFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTA-GG 631 (1041)
Q Consensus 553 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~ 631 (1041)
..+..+.+.+ |+. ......++..|...|++++|.++++.+.... .+
T Consensus 418 ~~~~~a~~~~--~~~-------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 464 (899)
T TIGR02917 418 ADLETAAQLD--PEL-------------------------------GRADLLLILSYLRSGQFDKALAAAKKLEKKQPDN 464 (899)
T ss_pred HHHHHHHhhC--Ccc-------------------------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Confidence 9999987763 221 1123345566778899999999999998864 45
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHcC---CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 001632 632 SSVVSQLICKFIRDGMRLTFKFLMKLG---YILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYA 708 (1041)
Q Consensus 632 ~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 708 (1041)
...+..+...+...|+.++|....+.. .+.+...+..++..+...|++++|.+.|+.+....+.+..++..+...+.
T Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 544 (899)
T TIGR02917 465 ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYL 544 (899)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 568889999999999999999854432 34456678888999999999999999999988777888999999999999
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 001632 709 KCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAAS 788 (1041)
Q Consensus 709 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 788 (1041)
+.|+.++|...++++...+ ..+...+..+...+...|++++|..+++.+.+..+ .+...|..++..+...|++++|..
T Consensus 545 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 622 (899)
T TIGR02917 545 RTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVS 622 (899)
T ss_pred HcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998864 23566788889999999999999999999987654 466789999999999999999999
Q ss_pred HHHHHH---------------HHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001632 789 IYERML---------------VYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIK 853 (1041)
Q Consensus 789 ~~~~~~---------------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 853 (1041)
.++++. .|.+.|++++|...|+++.+.. +.+..++..++..+...|++++|..+++.+.+.+ .
T Consensus 623 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 700 (899)
T TIGR02917 623 SFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-P 700 (899)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 999876 6778999999999999998865 5668899999999999999999999999999874 3
Q ss_pred CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHH
Q 001632 854 PGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLL 933 (1041)
Q Consensus 854 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 933 (1041)
.+...+..+...+...|++++|++.|+++.+. .|+..++..++.++.+.|++++|.+.++.+.+.. +.+...+..++
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la 777 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALA 777 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 45677888999999999999999999999885 4555778888999999999999999999999864 66778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhH
Q 001632 934 SAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHE 1013 (1041)
Q Consensus 934 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~e 1013 (1041)
..|...|++++|++.|+++++. .+.++.++..++..+...|+ .+|+.+++++.+..|.++..+..++.+|...|++++
T Consensus 778 ~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 855 (899)
T TIGR02917 778 ELYLAQKDYDKAIKHYRTVVKK-APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADR 855 (899)
T ss_pred HHHHHCcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999986 45678899999999999999 889999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCcc
Q 001632 1014 ANDILDSMNSVRIP 1027 (1041)
Q Consensus 1014 A~~~~~~~~~~~~~ 1027 (1041)
|.++++++.+.+..
T Consensus 856 A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 856 ALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHHhhCCC
Confidence 99999999987653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-26 Score=283.66 Aligned_cols=667 Identities=11% Similarity=0.073 Sum_probs=336.0
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHH----------
Q 001632 153 MCVVLKEQKGWRQATEFFAWMKLQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDE-IAC---------- 221 (1041)
Q Consensus 153 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~---------- 221 (1041)
-.......++.+.|.+.++.+.... +-++..+..+++.+.+.|+.++|.+.+++..+.. |+. ...
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcC
Confidence 3445556777888888877665322 2345566777777788888888888888877664 322 211
Q ss_pred ------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 001632 222 ------GTMLCTYARWGNHKAMLTFYSAVKERGIVPSTA-VFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLV 294 (1041)
Q Consensus 222 ------~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 294 (1041)
..+...+.+.|++++|.+.|+.+.+.+ +++.. ............|+.++|++.++++.+.. +-+...+..+
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~L 187 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTL 187 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 112223445555555555555554432 22211 11111111122355555555555555432 2233444455
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 001632 295 ISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPS-NYTCASLLSLYYKNEN 373 (1041)
Q Consensus 295 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~ 373 (1041)
...+...|+.++|+..|+++.... +.. ...+...+..+...+..++ ...+...+..+-....
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~--~~~---------------~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~ 250 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSP--AGR---------------DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDS 250 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCC--Cch---------------HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchH
Confidence 555555555555555555554321 100 0001111111111111111 1111111211111222
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001632 374 YSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIEL 453 (1041)
Q Consensus 374 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 453 (1041)
...|...+..+......|+.. .......+...|++++|...|++..+... .+...+..+...|.+.|++++|+..|++
T Consensus 251 ~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~ 328 (1157)
T PRK11447 251 VAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEK 328 (1157)
T ss_pred HHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334444454443332222221 12234555667777777777777766432 2566666777777777777777777777
Q ss_pred HHhCCCCC-CHHHH------------HHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 001632 454 MKSRNMWL-SRFAY------------IVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFI 520 (1041)
Q Consensus 454 ~~~~~~~~-~~~~~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 520 (1041)
..+..... ....+ ......+.+.|++++|+..|+++....+.+...+..+..++...|++++|.+.|
T Consensus 329 Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y 408 (1157)
T PRK11447 329 ALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYY 408 (1157)
T ss_pred HHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 66543211 11111 112334556677777777777777666656666666667777777777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhh
Q 001632 521 AHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLM 600 (1041)
Q Consensus 521 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (1041)
+++.+.. +.+...+..+...+. .++.++|..+++.+....
T Consensus 409 ~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~-------------------------------------- 448 (1157)
T PRK11447 409 QQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQ-------------------------------------- 448 (1157)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHH--------------------------------------
Confidence 7766542 223444444555443 345566665555432210
Q ss_pred HHHHhhhhccCcccHHHHHHHHHHHhhcCCchhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 001632 601 ALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLK 680 (1041)
Q Consensus 601 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 680 (1041)
+. .... . .. ......+..+...+...|+++
T Consensus 449 -----------------------------~~--~~~~-------------~----~~--~l~~~~~~~~a~~~~~~g~~~ 478 (1157)
T PRK11447 449 -----------------------------RR--SIDD-------------I----ER--SLQNDRLAQQAEALENQGKWA 478 (1157)
T ss_pred -----------------------------HH--HHHH-------------H----HH--HhhhhHHHHHHHHHHHCCCHH
Confidence 00 0000 0 00 001123445667778889999
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhcc
Q 001632 681 EAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQ 760 (1041)
Q Consensus 681 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 760 (1041)
+|.+.|+++....|.+..++..+...|.+.|++++|...++++.+.... +...+..+...+...++.++|+..++.+..
T Consensus 479 eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~ 557 (1157)
T PRK11447 479 QAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPR 557 (1157)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCc
Confidence 9999999977777778888888999999999999999999998875322 334444444456677888888888877654
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001632 761 DNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEA 840 (1041)
Q Consensus 761 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 840 (1041)
....++......-+. . ...+.....+...|+.++|+++++. .+.+...+..+...|.+.|++++|
T Consensus 558 ~~~~~~~~~l~~~l~-------~---~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A 622 (1157)
T PRK11447 558 AQWNSNIQELAQRLQ-------S---DQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAA 622 (1157)
T ss_pred hhcChhHHHHHHHHh-------h---hHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHH
Confidence 332222111110000 0 0011111123344445555444431 123333444455555555555555
Q ss_pred HHHHHHHHHcCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 841 SLLFSEMQEEGIKP-GLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQK 919 (1041)
Q Consensus 841 ~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 919 (1041)
+..|++..+. .| +...+..++..|...|++++|++.++...+. .+.+......+..++...|++++|.++++.+++
T Consensus 623 ~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 623 RAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT-ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 5555555543 22 2334444555555555555555555544432 122233334444445555555555555555544
Q ss_pred CCC--CC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001632 920 QGI--PP---SCTHVNHLLSAFSKAGLMAEATRVYNESL 953 (1041)
Q Consensus 920 ~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 953 (1041)
..- +| +...+..++.++...|++++|++.|++.+
T Consensus 700 ~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 700 QAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred hCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 210 11 11233344445555555555555555543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-26 Score=289.69 Aligned_cols=654 Identities=12% Similarity=0.066 Sum_probs=412.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHH---------
Q 001632 221 CGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTY--------- 291 (1041)
Q Consensus 221 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~--------- 291 (1041)
.-..++.+...++.+.|.+.++++.... +.++..+..++..+...|+.++|.+.+++..+.. |+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~ 107 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHh
Confidence 4455777888889999999999887764 4567788888888888999999999999888754 432221
Q ss_pred --------HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 001632 292 --------TLVISSFVKGSLLEEALKTFNEMKSTGFAPEEV-TYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCA 362 (1041)
Q Consensus 292 --------~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 362 (1041)
..+...+.+.|++++|.+.|+.+.+.+ +|+.. ....+.......|+.++|++.|+++.+.... +...+.
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~ 185 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRN 185 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 222335666777777777777776553 22221 1111111222347777777777777665322 445566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 001632 363 SLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSD-EKTYLAMAQVHLTS 441 (1041)
Q Consensus 363 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~ 441 (1041)
.+...+...|+.++|...++++.+.. +.. ...+...+..+...+..+. ...+...+..+-..
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~--~~~---------------~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~ 248 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSP--AGR---------------DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDG 248 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCC--Cch---------------HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCc
Confidence 66667777777777777777765532 110 0111111111111111111 11122222222222
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 001632 442 RNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIA 521 (1041)
Q Consensus 442 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 521 (1041)
...+.|...+.........|... .......+...|++++|+..|++..+..+.+...+..+..++.+.|++++|...|+
T Consensus 249 ~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~ 327 (1157)
T PRK11447 249 DSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFE 327 (1157)
T ss_pred hHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33445555555544432233322 12334556677888888888888887777777778888888888888888888888
Q ss_pred HHHHcCCCCC-HHHHHH------------HHHHHHhcCChhhHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCCccccc
Q 001632 522 HIRKDQVDFD-EELYRS------------VMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFG 588 (1041)
Q Consensus 522 ~~~~~~~~~~-~~~~~~------------ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~ 588 (1041)
+..+...... ...+.. ....+.+.|++++|...|+++.+.
T Consensus 328 ~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--------------------------- 380 (1157)
T PRK11447 328 KALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV--------------------------- 380 (1157)
T ss_pred HHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------------------------
Confidence 7766432211 111111 122334444444454444444433
Q ss_pred chhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHhhcCCchhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHH
Q 001632 589 DKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTAS 668 (1041)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 668 (1041)
.+ .+...+..
T Consensus 381 ----------------------------------------~P------------------------------~~~~a~~~ 390 (1157)
T PRK11447 381 ----------------------------------------DN------------------------------TDSYAVLG 390 (1157)
T ss_pred ----------------------------------------CC------------------------------CCHHHHHH
Confidence 11 23344555
Q ss_pred HHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--------CCHHHHHHHHH
Q 001632 669 LIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCA--------LDAVAISILVN 740 (1041)
Q Consensus 669 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--------~~~~~~~~l~~ 740 (1041)
+...|...|++++|++.|+++....+.+...+..+...|. .++.++|..+++.+...... .....+..+..
T Consensus 391 Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~ 469 (1157)
T PRK11447 391 LGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAE 469 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 6667777777777777777766555666666666666664 34667777776654322100 01123444556
Q ss_pred HHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCC
Q 001632 741 TLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLD 820 (1041)
Q Consensus 741 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 820 (1041)
.+...|++++|+..+++.++..+. +...+..+... |.+.|++++|...|+++.+.. +.+
T Consensus 470 ~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~-------------------~~~~G~~~~A~~~l~~al~~~-P~~ 528 (1157)
T PRK11447 470 ALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQD-------------------LRQAGQRSQADALMRRLAQQK-PND 528 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH-------------------HHHcCCHHHHHHHHHHHHHcC-CCC
Confidence 677778888888888887776654 23334444443 344555556666666655543 334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc---------ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 001632 821 EKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGL---------ISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNS 891 (1041)
Q Consensus 821 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~---------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 891 (1041)
...+..+...+.+.++.++|...++++......++. ..+..+++.+...|+.++|+++++. .+.+.
T Consensus 529 ~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~ 603 (1157)
T PRK11447 529 PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPST 603 (1157)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCc
Confidence 555555566677788888888888776432111111 1123456778899999999999872 35566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 001632 892 FTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGY 971 (1041)
Q Consensus 892 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 971 (1041)
..+..+...+.+.|++++|++.|+++++.. |.+...+..++.+|...|++++|++.++.+++. .+.+...+..+..++
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-~p~~~~~~~~la~~~ 681 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT-ANDSLNTQRRVALAW 681 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-CCCChHHHHHHHHHH
Confidence 677888899999999999999999999864 556678899999999999999999999998764 223566777788889
Q ss_pred HhcCChHHHHHHHHHHHhccCCh------HHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 001632 972 MDHGYIEEGINLFEEVRESSESD------KFIMSAAVHLYRYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 972 ~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 1023 (1041)
...|++++|+.+++++....+.+ +.++..++.++...|++++|++.+++...
T Consensus 682 ~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 682 AALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999988765433 34667779999999999999999998864
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-24 Score=254.50 Aligned_cols=224 Identities=10% Similarity=0.052 Sum_probs=167.7
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHHHcCCHHHHH
Q 001632 798 RGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLI-SYNIIINVYAAAGLYNEVE 876 (1041)
Q Consensus 798 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~ 876 (1041)
..|++++|+..|+++... +|+...+..+...+.+.|+.++|...+++..+.. |+.. .+..+...+...|++++|+
T Consensus 521 ~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 521 QVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHH
Confidence 345555555555555443 3444455666777888888888888888888753 3332 2222233344558999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001632 877 KLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAG 956 (1041)
Q Consensus 877 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 956 (1041)
..+++..+. .|+...+..+..++.+.|++++|+..+++.++.. |.+...++.++.++...|+.++|++.+++.++.
T Consensus 597 ~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l- 672 (987)
T PRK09782 597 NDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG- 672 (987)
T ss_pred HHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 999888874 5677778888888889999999999999988864 445567888888888899999999999988874
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCccch
Q 001632 957 IIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRIPFM 1029 (1041)
Q Consensus 957 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~ 1029 (1041)
.+-+...+..+..++...|++++|+..++++.+..|.++.+....+++..+..+++.|.+-+++.-.....-+
T Consensus 673 ~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 673 LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 2336778888888888999999999999998888888888888888888888888888888877766555544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-24 Score=252.40 Aligned_cols=628 Identities=10% Similarity=-0.004 Sum_probs=399.5
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001632 335 KHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQK 414 (1041)
Q Consensus 335 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 414 (1041)
..|++++|+..|++..+.... +..++..|...|...|++++|+..+++..+.. |+...|..++..+ ++.++|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHH
Confidence 448888888888888776543 36677778888888888888888888888763 3433343333222 77888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHH--------HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHhHHHHH
Q 001632 415 TFAETEQLGLLSDEKTYLAMAQV--------HLTSRNVEKALDVIELMKSRNMWLSRFAYIVM-LQCYVMKEDLGSAEGT 485 (1041)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~li~~--------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~ 485 (1041)
+++++.+.... +..++..+... |.+. +.|.+.++ .......|+..+.... .+.|...+++++|++.
T Consensus 130 ~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 130 TVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 88888876433 34444444443 5554 44444444 3333334445545544 7888888888888888
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 001632 486 FQTLAKTGLPDAGSCNDMLNLYIK-LDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSL 564 (1041)
Q Consensus 486 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~ 564 (1041)
+.++.+.++.+......|...|.. .++ +.+..+++. .++-+...+..+...|.+.|+.++|..++.++......
T Consensus 205 L~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 205 YNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC
Confidence 888888887777777777777777 366 777777553 23357788888888899999999999888887766433
Q ss_pred -CCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHhhcCCchhHHHHHHHHHH
Q 001632 565 -KDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFI 643 (1041)
Q Consensus 565 -p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~ 643 (1041)
|+..++...+....... ..+-........+.-......++..+..+++++.+.++ ++..+..+....-.....
T Consensus 280 ~~~~~~~~~~l~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~r~~~~~ 353 (987)
T PRK09782 280 DAQEKSWLYLLSKYSANP--VQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL----LATLPANEMLEERYAVSV 353 (987)
T ss_pred CCccHHHHHHHHhccCch--hhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH----hcCCCcchHHHHHHhhcc
Confidence 66666665555444332 11111112222233333334456777777777766544 223333332211111112
Q ss_pred HcCCHHHHHHHHH---cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcC---CCCChHHHHHHHHHHHhcCChh---
Q 001632 644 RDGMRLTFKFLMK---LGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVS---CKPGKLVLRSMIDAYAKCGKAE--- 714 (1041)
Q Consensus 644 ~~g~~~~a~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~--- 714 (1041)
..+...++..... ...+.+.....-+.....+.|+.++|..++...... ...+.....-++..|.+.+...
T Consensus 354 ~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred ccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 2233333333111 111224444444444555556666666666654321 0112233445555555555522
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH---HHHHHhccCCCC-CChhhHHHHHHHHHhcCChhHHHHHH
Q 001632 715 DVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAE---IIIHNSFQDNLD-LDTVAYNTCIKAMLGAGKLHFAASIY 790 (1041)
Q Consensus 715 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~ 790 (1041)
++..+-..+-. ..- +.-.|+..++. ..+.......+. -+...|..+...+.
T Consensus 434 ~~~~l~~~~~~-------~~~------~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~------------ 488 (987)
T PRK09782 434 KVAILSKPLPL-------AEQ------RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYR------------ 488 (987)
T ss_pred HHHHhcccccc-------chh------HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHH------------
Confidence 22222211111 111 11112222222 222222222111 13444555554332
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcC
Q 001632 791 ERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAG 870 (1041)
Q Consensus 791 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 870 (1041)
. ++.++|+..|.+..... |+......+...+...|++++|...|+++... .|+...+..+..++.+.|
T Consensus 489 -------~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~G 556 (987)
T PRK09782 489 -------D-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAG 556 (987)
T ss_pred -------h-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCC
Confidence 2 56666777666665543 55444444555567899999999999998664 455566777888899999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 001632 871 LYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYN 950 (1041)
Q Consensus 871 ~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 950 (1041)
+.++|.+.+++..+.+ +.+...+..+.......|++++|+..+++.++. .|+...+..++.++.+.|+.++|+..++
T Consensus 557 d~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~ 633 (987)
T PRK09782 557 NGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLR 633 (987)
T ss_pred CHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998853 333333444444555679999999999999985 4778899999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccC
Q 001632 951 ESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVR 1025 (1041)
Q Consensus 951 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 1025 (1041)
+.++. .+.+...+..+...+...|++++|+..++++.+..|.++.++..++.+|...|++++|+..+++..+..
T Consensus 634 ~AL~l-~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 634 AALEL-EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99985 233677888888899999999999999999999999999999999999999999999999999987654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-21 Score=214.44 Aligned_cols=688 Identities=13% Similarity=0.084 Sum_probs=403.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCCHH-HHHHHHHHHHhcC-----------ChHHHHHHHHH
Q 001632 182 CVVAYTILLRLYGQVGKIKLAEQTFLEMLEA------GCEPDEI-ACGTMLCTYARWG-----------NHKAMLTFYSA 243 (1041)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~-~~~~li~~~~~~g-----------~~~~a~~~~~~ 243 (1041)
-..+|..+...|.+.|..++...+++.-... ++..+.. .++.+...|...+ .+..|..+|+.
T Consensus 40 ~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~ 119 (1018)
T KOG2002|consen 40 PLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDL 119 (1018)
T ss_pred chhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhH
Confidence 3456888888999999999999988876511 1111111 1222222222221 12223333333
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CC
Q 001632 244 VKERGIVPSTAVFNFMLSSLHKKSY--HRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKST--GF 319 (1041)
Q Consensus 244 m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~ 319 (1041)
.-......+.. +..--..|...|. .+.|.+.|....+.. +++.-.+-.-.......|++..|+.+|...+.. ..
T Consensus 120 A~ki~m~~~~~-l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~ 197 (1018)
T KOG2002|consen 120 ADKIDMYEDSH-LLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPAC 197 (1018)
T ss_pred HHHhhccCcch-hhhhhhhhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCccc
Confidence 22211111110 1001111222232 466666666666542 233222222222333456777777777775543 22
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHH
Q 001632 320 APEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKN---ENYSKALSLFSEMEKFKVAADEVIY 396 (1041)
Q Consensus 320 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~ 396 (1041)
.||... .+..++.+.|+.+.|...|.+..+.+.. ++.++..|.-.-... ..+..+.+++...-... .-|++..
T Consensus 198 ~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp~-~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l 273 (1018)
T KOG2002|consen 198 KADVRI--GIGHCFWKLGMSEKALLAFERALQLDPT-CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVAL 273 (1018)
T ss_pred CCCccc--hhhhHHHhccchhhHHHHHHHHHhcChh-hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHH
Confidence 334322 2334555677777777777777664321 233333332222222 23445555555554432 2255666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001632 397 GLLIRIYGKLGLYEDAQKTFAETEQLGLL--SDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYV 474 (1041)
Q Consensus 397 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 474 (1041)
+.|...|.-.|++..++.+...+...... .-...|..+.++|-..|++++|...|-+..+..-.--...+..|.+.+.
T Consensus 274 ~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 274 NHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI 353 (1018)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH
Confidence 77777777777777777777766654211 1123456677777777777777777766655432112234445666777
Q ss_pred hcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 001632 475 MKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLD----LTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTD 550 (1041)
Q Consensus 475 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 550 (1041)
+.|+++.+...|+.+.+..+.+..+...|...|...+ ..+.|..++....+.. +.|...|..+...+... +...
T Consensus 354 ~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~ 431 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWA 431 (1018)
T ss_pred HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHH
Confidence 7777777777777777776666666666666666554 3344444444444331 23444444444333332 2222
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHhhcCC
Q 001632 551 AEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAG 630 (1041)
Q Consensus 551 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 630 (1041)
++.+|......
T Consensus 432 sL~~~~~A~d~--------------------------------------------------------------------- 442 (1018)
T KOG2002|consen 432 SLDAYGNALDI--------------------------------------------------------------------- 442 (1018)
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 23333322211
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcC----CCCCh------HHH
Q 001632 631 GSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVS----CKPGK------LVL 700 (1041)
Q Consensus 631 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~------~~~ 700 (1041)
+...+..+.+.+.+.+.......|.+.+|...|...... ..++. .+-
T Consensus 443 -----------------------L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~ 499 (1018)
T KOG2002|consen 443 -----------------------LESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLK 499 (1018)
T ss_pred -----------------------HHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHH
Confidence 222333455556666666666666666666666554321 11111 112
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhc
Q 001632 701 RSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGA 780 (1041)
Q Consensus 701 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 780 (1041)
..+...+-..++.+.|.+.|..++. ..+. .|++|.+.
T Consensus 500 YNlarl~E~l~~~~~A~e~Yk~Ilk-----------------------------------ehp~--------YId~ylRl 536 (1018)
T KOG2002|consen 500 YNLARLLEELHDTEVAEEMYKSILK-----------------------------------EHPG--------YIDAYLRL 536 (1018)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHH-----------------------------------HCch--------hHHHHHHh
Confidence 2233333344444445555554444 3321 33333333
Q ss_pred CChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCcccH
Q 001632 781 GKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEE-GIKPGLISY 859 (1041)
Q Consensus 781 g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~ 859 (1041)
|. +-...++..+|...+..+...+ ..|+.++.-+.+.|.+..++..|.+-|....+. ...+|..+.
T Consensus 537 ~~------------ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysl 603 (1018)
T KOG2002|consen 537 GC------------MARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSL 603 (1018)
T ss_pred hH------------HHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHH
Confidence 31 1122356666677777766654 466677777778888888898898877777664 223677777
Q ss_pred HHHHHHHHH------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 001632 860 NIIINVYAA------------AGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCT 927 (1041)
Q Consensus 860 ~~l~~~~~~------------~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 927 (1041)
.+|.+.|.+ .+..++|+++|++.++. .+-|.+.-+-++-+++..|++++|..+|.++.+.. .....
T Consensus 604 iaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~-dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~d 681 (1018)
T KOG2002|consen 604 IALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN-DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFED 681 (1018)
T ss_pred HHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc-CcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCc
Confidence 778887763 34578899999999886 56788888889999999999999999999999864 34667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 001632 928 HVNHLLSAFSKAGLMAEATRVYNESLAAGI-IPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYR 1006 (1041)
Q Consensus 928 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 1006 (1041)
+|-+++++|..+|++..|+++|+..++.-. ..+......|.+++++.|++.+|...+..++...|.|+.....++-+..
T Consensus 682 v~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~k 761 (1018)
T KOG2002|consen 682 VWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLK 761 (1018)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHH
Confidence 899999999999999999999999776533 3367888999999999999999999999999999999877666654433
Q ss_pred -------------------hcCChhHHHHHHHHhhccCcc
Q 001632 1007 -------------------YAGKEHEANDILDSMNSVRIP 1027 (1041)
Q Consensus 1007 -------------------~~g~~~eA~~~~~~~~~~~~~ 1027 (1041)
..+..++|.++|..|...+-.
T Consensus 762 kla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 762 KLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 345677888888888776654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-19 Score=195.20 Aligned_cols=568 Identities=15% Similarity=0.161 Sum_probs=352.2
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001632 339 SDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKF--KVAADEVIYGLLIRIYGKLGLYEDAQKTF 416 (1041)
Q Consensus 339 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 416 (1041)
.+.|...|....+.. ++|.-.+-.-.......+++..|..+|..+... ...+|..+ .+..++.+.|+.+.|...|
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence 467777777766543 223333333333344567777788887775442 23344322 2234556777777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 001632 417 AETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPD 496 (1041)
Q Consensus 417 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 496 (1041)
.+..+.++ -++.++..|...-....+. ..+..+..++.........+
T Consensus 223 ~ralqLdp-~~v~alv~L~~~~l~~~d~--------------------------------~s~~~~~~ll~~ay~~n~~n 269 (1018)
T KOG2002|consen 223 ERALQLDP-TCVSALVALGEVDLNFNDS--------------------------------DSYKKGVQLLQRAYKENNEN 269 (1018)
T ss_pred HHHHhcCh-hhHHHHHHHHHHHHHccch--------------------------------HHHHHHHHHHHHHHhhcCCC
Confidence 77776543 1233333222222222221 12223333333333333344
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCHHHHHHHH
Q 001632 497 AGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVD--FDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFC 574 (1041)
Q Consensus 497 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 574 (1041)
+.+.+.|.+.|...|+++.++.+...+...... .-...|-.+.++|...|+++.|..+|.+..+. .+|..
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~------ 341 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNF------ 341 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCc------
Confidence 444444445555555555555555444433110 11223445555555566666665555554443 11110
Q ss_pred HHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHhhcCCchhHHHHHHHHHHHcCCHHHHHHH
Q 001632 575 KILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDGMRLTFKFL 654 (1041)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 654 (1041)
.-+...+++.|+..|+++.+...|++++...|+
T Consensus 342 ------------------------~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~----------------------- 374 (1018)
T KOG2002|consen 342 ------------------------VLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN----------------------- 374 (1018)
T ss_pred ------------------------cccccchhHHHHHhchHHHHHHHHHHHHHhCcc-----------------------
Confidence 122334555556666666666666666553322
Q ss_pred HHcCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHH----Hc
Q 001632 655 MKLGYILDDEVTASLIGSYGKHQ----KLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEAT----AQ 726 (1041)
Q Consensus 655 ~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~ 726 (1041)
+..+...|...|...+ ..+.|..+..+.....+.|...|..+...+....-+ .++..|..+. ..
T Consensus 375 -------~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~ 446 (1018)
T KOG2002|consen 375 -------NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESK 446 (1018)
T ss_pred -------hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHc
Confidence 2334444444444443 456677777776666677888888887777655443 3477776554 34
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccC---CCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCh
Q 001632 727 GCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQD---NLDLDTV-AYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKL 802 (1041)
Q Consensus 727 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 802 (1041)
+-.+.....|.+.......|++.+|...|...... ...+|.. +.+ ...-|.........+++
T Consensus 447 ~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~--------------lt~~YNlarl~E~l~~~ 512 (1018)
T KOG2002|consen 447 GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTN--------------LTLKYNLARLLEELHDT 512 (1018)
T ss_pred CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccch--------------hHHHHHHHHHHHhhhhh
Confidence 55567778888888888899999998888877655 1222221 000 00011111234556788
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 001632 803 DKALEMFNTARSLGLSLD-EKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQA 881 (1041)
Q Consensus 803 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 881 (1041)
+.|.++|..+.+.. |+ +..|--++-..-..+...+|...+.+..+. ..-++..+..+.+.|.+...+..|.+-|..
T Consensus 513 ~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~~ 589 (1018)
T KOG2002|consen 513 EVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFET 589 (1018)
T ss_pred hHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHHH
Confidence 88999999988763 43 223333332222346788999999998875 234566677778888888888888887776
Q ss_pred HHHc-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 001632 882 MQRD-GFSPNSFTYLSLVQAYTE------------AAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRV 948 (1041)
Q Consensus 882 m~~~-g~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 948 (1041)
..+. ...+|.++..+|++.|.+ .+..++|+++|.++++.+ |.|..+-|.++-+++..|++.+|..+
T Consensus 590 i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dI 668 (1018)
T KOG2002|consen 590 ILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDI 668 (1018)
T ss_pred HHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHH
Confidence 6553 233788998899887643 245688999999999874 67788899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc--CChHHHHHHHHHHHHhcCChhHHHHHHHHhhcc
Q 001632 949 YNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESS--ESDKFIMSAAVHLYRYAGKEHEANDILDSMNSV 1024 (1041)
Q Consensus 949 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 1024 (1041)
|.+..+.. .-+..+|-.+...|...|+|..|+++|+...... ..++.++..|+.++...|++.+|.+.+......
T Consensus 669 FsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 669 FSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99998863 3356678889999999999999999999976643 456889999999999999999999988776543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-21 Score=200.28 Aligned_cols=308 Identities=17% Similarity=0.168 Sum_probs=236.8
Q ss_pred ccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHH
Q 001632 675 KHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALD-AVAISILVNTLTNHGKHEQAEI 753 (1041)
Q Consensus 675 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~ 753 (1041)
..|++.+|...+.++....+--...|..|.-.+..+|+...|++.|++.++. .|+ ...|..|-..|...+.+++|+.
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHH
Confidence 4456666666666655444555566777777777777777777777777664 333 2355556666666666666666
Q ss_pred HHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001632 754 IIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGK 833 (1041)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 833 (1041)
.+.+.....+.. .+++..+.- +|...|.++-|+..|++.++.. +.-...|+.|.+++-.
T Consensus 274 ~Y~rAl~lrpn~-A~a~gNla~-------------------iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd 332 (966)
T KOG4626|consen 274 CYLRALNLRPNH-AVAHGNLAC-------------------IYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKD 332 (966)
T ss_pred HHHHHHhcCCcc-hhhccceEE-------------------EEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHh
Confidence 666555443321 122222222 5677788888888888888764 3345789999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 001632 834 AGKTHEASLLFSEMQEEGIKPGL-ISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPN-SFTYLSLVQAYTEAAKYSEAE 911 (1041)
Q Consensus 834 ~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~ 911 (1041)
.|++.+|...+.+.... .|+. .+.+.|.+.|...|.+++|..+|....+ +.|. ...++.|...|-.+|++++|+
T Consensus 333 ~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai 408 (966)
T KOG4626|consen 333 KGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAI 408 (966)
T ss_pred ccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHH
Confidence 99999999999999885 4543 6788999999999999999999999888 4454 556899999999999999999
Q ss_pred HHHHHHHHCCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 001632 912 ETINSMQKQGIPPSCT-HVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD-LACYRTMLKGYMDHGYIEEGINLFEEVRE 989 (1041)
Q Consensus 912 ~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 989 (1041)
..|++.+. +.|+.. .|++++..|-..|+++.|++.|.+++. +.|. ....+.|...|-++|++.+|+.-|+++..
T Consensus 409 ~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 409 MCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 99999998 678865 899999999999999999999999998 5665 56788999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHhcCChhH
Q 001632 990 SSESDKFIMSAAVHLYRYAGKEHE 1013 (1041)
Q Consensus 990 ~~~~~~~~~~~l~~~~~~~g~~~e 1013 (1041)
..|+.+.++-.+.+++.-..+|.+
T Consensus 485 lkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 485 LKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred cCCCCchhhhHHHHHHHHHhcccc
Confidence 888888999999888766555555
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.7e-21 Score=195.63 Aligned_cols=331 Identities=19% Similarity=0.164 Sum_probs=267.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 001632 665 VTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALD-AVAISILVNTLT 743 (1041)
Q Consensus 665 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~l~~~~~ 743 (1041)
.+..+..++...|+.+.|.+.|.......|...-....+...+...|+.++|..-|.+.++. .|. .+.|+.|...+.
T Consensus 152 a~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~ 229 (966)
T KOG4626|consen 152 AYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFN 229 (966)
T ss_pred HHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHh
Confidence 44556666667777777777777755555545555566777778899999999999998875 343 457888888899
Q ss_pred ccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHH
Q 001632 744 NHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKA 823 (1041)
Q Consensus 744 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 823 (1041)
..|++..|+..+++..+-.+..- -.|-.|... |...+.+++|+..|.++.... +....+
T Consensus 230 ~~Gei~~aiq~y~eAvkldP~f~-dAYiNLGnV-------------------~ke~~~~d~Avs~Y~rAl~lr-pn~A~a 288 (966)
T KOG4626|consen 230 AQGEIWLAIQHYEEAVKLDPNFL-DAYINLGNV-------------------YKEARIFDRAVSCYLRALNLR-PNHAVA 288 (966)
T ss_pred hcchHHHHHHHHHHhhcCCCcch-HHHhhHHHH-------------------HHHHhcchHHHHHHHHHHhcC-Ccchhh
Confidence 99999999999999887655321 133344443 344455566666666666543 334457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001632 824 YMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGL-ISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYT 902 (1041)
Q Consensus 824 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 902 (1041)
+..|...|-.+|.++-|+..+++.++. .|+. ..|+.|.+++-..|+..+|+..|.+.+.. .+--....+.|.++|.
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-CPNHADAMNNLGNIYR 365 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-CCccHHHHHHHHHHHH
Confidence 888888899999999999999999986 6665 78999999999999999999999999885 3344567888999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHH
Q 001632 903 EAAKYSEAEETINSMQKQGIPPSCT-HVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD-LACYRTMLKGYMDHGYIEEG 980 (1041)
Q Consensus 903 ~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 980 (1041)
+.|++++|..+|....+ +.|... .+++|+..|-.+|++++|+.-|++.+. +.|. ...|+.+...|-..|+..+|
T Consensus 366 E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHH
Confidence 99999999999999999 557654 789999999999999999999999987 7887 45899999999999999999
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccC
Q 001632 981 INLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVR 1025 (1041)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 1025 (1041)
++.+.+++...|.-+.+.+.|+.+|...|+..+|..-.+..+...
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 999999999888889999999999999999999999998876644
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-17 Score=195.08 Aligned_cols=257 Identities=19% Similarity=0.167 Sum_probs=160.1
Q ss_pred cCChhHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHH
Q 001632 710 CGKAEDVYLLYKEATAQG-CAL-DAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAA 787 (1041)
Q Consensus 710 ~g~~~~A~~~~~~~~~~g-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 787 (1041)
.+++++|...|++..+.+ ..| ....+..+...+...|++++|+..+++.+...+. ....|..+...+
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~---------- 375 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMN---------- 375 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHH----------
Confidence 345666666666666543 112 2234444455555566666666666655554332 122333333332
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHH
Q 001632 788 SIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPG-LISYNIIINVY 866 (1041)
Q Consensus 788 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~ 866 (1041)
...|++++|+..|+++.+.. +.+..+|..+...|...|++++|...|++.++. .|+ ...+..+..++
T Consensus 376 ---------~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 376 ---------LELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQ 443 (615)
T ss_pred ---------HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHH
Confidence 33344555555555554443 445667777888888888888888888888775 343 45566677777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-h-------HHHHHHHHHHh
Q 001632 867 AAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSC-T-------HVNHLLSAFSK 938 (1041)
Q Consensus 867 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~-------~~~~l~~~~~~ 938 (1041)
.+.|++++|+..|++.++. .+.+...++.+..++...|++++|++.|++.++.. |+. . .++..+..+..
T Consensus 444 ~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CccccccccHHHHHHHHHHHHHH
Confidence 8888888888888887764 34456677777788888888888888888877743 221 1 11112223334
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCh
Q 001632 939 AGLMAEATRVYNESLAAGIIP-DLACYRTMLKGYMDHGYIEEGINLFEEVRESSESD 994 (1041)
Q Consensus 939 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 994 (1041)
.|++++|++++++.++. .| +..++..++..+.+.|++++|+.+|+++.+..+..
T Consensus 521 ~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 521 KQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred hhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 67888888888887764 34 44567777788888888888888888877655543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-14 Score=155.76 Aligned_cols=545 Identities=16% Similarity=0.085 Sum_probs=304.7
Q ss_pred HHhhcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 001632 157 LKEQKGWRQATEFFAWMKLQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKA 236 (1041)
Q Consensus 157 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 236 (1041)
|...|+.++|.+++.++.++. +.+...|-.|..+|-..|+.+.+...+-...-.. +.|...|..+.....+.|++..
T Consensus 149 lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHH
Confidence 334566666666666665543 2344556666666666666666665554433222 2244566666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHcCCCHHHHHHHHH
Q 001632 237 MLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDF----TYTLVISSFVKGSLLEEALKTFN 312 (1041)
Q Consensus 237 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~ 312 (1041)
|.-.|.+..+.. +++...+---+..|-+.|+...|...|.++.....+.|.. +--.+++.+...++-+.|.+.++
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 666666666554 3444444445555666666666666666665543211211 22233444555555566666665
Q ss_pred HHHHCC-CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 001632 313 EMKSTG-FAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAA 391 (1041)
Q Consensus 313 ~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 391 (1041)
.....+ -.-+...++.++..+.+...++.|......+..+...+|..-+.+- ..++. .-..++ . ...++.+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~-----~~~~~-~~~~~~-~-~~~~~s~ 376 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD-----ERRRE-EPNALC-E-VGKELSY 376 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh-----hhccc-cccccc-c-CCCCCCc
Confidence 555421 1223344555666666666666666666555543333332222110 00000 000000 0 0112333
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001632 392 DEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLL--SDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVM 469 (1041)
Q Consensus 392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 469 (1041)
+..++. +.-++......+....+.....+.... -+...|.-+..+|.+.|++..|+.++..+......-+...|-.+
T Consensus 377 ~l~v~r-l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 377 DLRVIR-LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred cchhHh-HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 444422 222333444444444455555555533 34567888999999999999999999999887666678899999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH--------cCCCCCHHHHHHHHHH
Q 001632 470 LQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRK--------DQVDFDEELYRSVMKI 541 (1041)
Q Consensus 470 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~~ll~~ 541 (1041)
..+|...|..+.|.+.|..++...+.+..+...|...+.+.|+.++|.+.+..+.. .+..|+..........
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~ 535 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI 535 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence 99999999999999999999999998899999999999999999999999988542 2345556666666777
Q ss_pred HHhcCChhhHHHHHHHHhhCCC-----CCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHH
Q 001632 542 YCKEGMVTDAEQFVEEMGKNGS-----LKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFS 616 (1041)
Q Consensus 542 ~~~~g~~~~A~~~~~~m~~~~~-----~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (1041)
+.+.|+.++-+.....|+...+ .|+..- .......-...+.
T Consensus 536 l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k--------------------------------~r~~~~~~~~~~~-- 581 (895)
T KOG2076|consen 536 LFQVGKREEFINTASTLVDDFLKKRYIFPRNKK--------------------------------KRRRAIAGTTSKR-- 581 (895)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHH--------------------------------HHHHhhccccccc--
Confidence 8888888886666666655310 010000 0000000000111
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHcCCHHHHHH----------HHHcCCCCCHH--HHHHHHHHHhccCCHHHHHH
Q 001632 617 KREKILKLLLHTAGGSSVVSQLICKFIRDGMRLTFKF----------LMKLGYILDDE--VTASLIGSYGKHQKLKEAQD 684 (1041)
Q Consensus 617 ~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----------~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~ 684 (1041)
.+....+++....+.++...... ....++..+.+ .+..++..+++.+..++|..
T Consensus 582 --------------~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~ 647 (895)
T KOG2076|consen 582 --------------YSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALS 647 (895)
T ss_pred --------------cchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 11222222222222222111111 22233333332 45667778888899999988
Q ss_pred HHHHhh--cCCCCChH----HHHHHHHHHHhcCChhHHHHHHHHHHHc-CCC--C-CHHHHHHHHHHHHccCCHHHHHHH
Q 001632 685 VFKAAT--VSCKPGKL----VLRSMIDAYAKCGKAEDVYLLYKEATAQ-GCA--L-DAVAISILVNTLTNHGKHEQAEII 754 (1041)
Q Consensus 685 ~~~~~~--~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~--~-~~~~~~~l~~~~~~~g~~~~A~~~ 754 (1041)
+...+. ..+..+.. .-..++.+.+..+++..|.+.++.|... +.. | -...|+...+.+.+.++-.--..+
T Consensus 648 vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~ 727 (895)
T KOG2076|consen 648 VVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRL 727 (895)
T ss_pred HHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887744 12222222 3345666777788999999988888765 111 1 123445455555555544333444
Q ss_pred HHHhccCC
Q 001632 755 IHNSFQDN 762 (1041)
Q Consensus 755 ~~~~~~~~ 762 (1041)
+..+....
T Consensus 728 ~~~~~~~~ 735 (895)
T KOG2076|consen 728 IMRLLVKN 735 (895)
T ss_pred HHHHhccC
Confidence 44443333
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-18 Score=188.65 Aligned_cols=297 Identities=15% Similarity=0.104 Sum_probs=198.5
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCC---hhhHHHHHHHHHhcCCh
Q 001632 707 YAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLD---TVAYNTCIKAMLGAGKL 783 (1041)
Q Consensus 707 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~ 783 (1041)
+...|++++|...|.++.+.+. .+..++..+...+...|++++|..+++.+......++ ...+..++..+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~------ 117 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY------ 117 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH------
Confidence 3445555555555555555421 1233455555555555555555555555554322111 12334444433
Q ss_pred hHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc----ccH
Q 001632 784 HFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGL----ISY 859 (1041)
Q Consensus 784 ~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~ 859 (1041)
.+.|++++|..+|+++.+.. +.+..+++.++..|.+.|++++|.+.++.+.+.+..+.. ..+
T Consensus 118 -------------~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 183 (389)
T PRK11788 118 -------------LKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFY 183 (389)
T ss_pred -------------HHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 34445555555555555432 456678888888888889999999888888876433221 134
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHH
Q 001632 860 NIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPS--CTHVNHLLSAFS 937 (1041)
Q Consensus 860 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~ 937 (1041)
..++..+.+.|++++|++.|+++.+. .+.+...+..++..|.+.|++++|.++++++.+.+ |+ ...++.++.+|.
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~l~~~~~ 260 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAA-DPQCVRASILLGDLALAQGDYAAAIEALERVEEQD--PEYLSEVLPKLMECYQ 260 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhH-CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--hhhHHHHHHHHHHHHH
Confidence 55677778888999999999888875 23445677778888888999999999999888753 33 346778888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHh---cCChhHH
Q 001632 938 KAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRY---AGKEHEA 1014 (1041)
Q Consensus 938 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~eA 1014 (1041)
..|++++|.+.++++.+. .|+...+..++..+.+.|++++|+.+++++.+..|.+. .+..+...+.. .|+.++|
T Consensus 261 ~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a 337 (389)
T PRK11788 261 ALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKES 337 (389)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhH
Confidence 999999999999988874 56666667788888889999999999988887766655 44444444443 5588889
Q ss_pred HHHHHHhhccCccchh
Q 001632 1015 NDILDSMNSVRIPFMK 1030 (1041)
Q Consensus 1015 ~~~~~~~~~~~~~~~~ 1030 (1041)
..++++|.+.++...+
T Consensus 338 ~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 338 LLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999988887764433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.3e-17 Score=187.79 Aligned_cols=335 Identities=12% Similarity=0.006 Sum_probs=234.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHH---cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHh
Q 001632 633 SVVSQLICKFIRDGMRLTFKFLMK---LGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAK 709 (1041)
Q Consensus 633 ~~~~~li~~~~~~g~~~~a~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 709 (1041)
.-...++....+.|+..+|..+.. ...+.+......++......|++++|...++.+....|.+...+..+...+..
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK 122 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 345566777778888887777432 22344455666666667778888888888888776667777778888888888
Q ss_pred cCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 001632 710 CGKAEDVYLLYKEATAQGCAL-DAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAAS 788 (1041)
Q Consensus 710 ~g~~~~A~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 788 (1041)
.|++++|...++++... .| +...+..+...+...|++++|...++.+....+.+....+. +.
T Consensus 123 ~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~-~~-------------- 185 (656)
T PRK15174 123 SKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIAT-CL-------------- 185 (656)
T ss_pred cCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHH-HH--------------
Confidence 88888888888888775 23 34566667777788888888888777776655543332221 11
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHH
Q 001632 789 IYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAA 868 (1041)
Q Consensus 789 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 868 (1041)
.+...|++++|...++.+.+....++...+..+...+.+.|++++|+..+++..+... .+...+..+...|..
T Consensus 186 ------~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~ 258 (656)
T PRK15174 186 ------SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQ 258 (656)
T ss_pred ------HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 1345678888888888877664334445555566777888888888888888877532 234566677888888
Q ss_pred cCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHH
Q 001632 869 AGLYNE----VEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAE 944 (1041)
Q Consensus 869 ~g~~~~----A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 944 (1041)
.|++++ |+..|++..+. .+.+...+..+...+...|++++|...++++.+.. +.+...+..++.+|...|++++
T Consensus 259 ~G~~~eA~~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~e 336 (656)
T PRK15174 259 SGRSREAKLQAAEHWRHALQF-NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTA 336 (656)
T ss_pred cCCchhhHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 888775 78888888774 34456677788888888888888888888888753 3344567778888888888888
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhccCChH
Q 001632 945 ATRVYNESLAAGIIPDL-ACYRTMLKGYMDHGYIEEGINLFEEVRESSESDK 995 (1041)
Q Consensus 945 A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 995 (1041)
|+..++++++. .|+. ..+..+..++...|++++|+..|+++.+..|.+.
T Consensus 337 A~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 337 ASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 88888888763 4443 3334455677788888888888888777666553
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.4e-16 Score=185.62 Aligned_cols=334 Identities=11% Similarity=0.049 Sum_probs=212.2
Q ss_pred HHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 001632 669 LIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKH 748 (1041)
Q Consensus 669 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 748 (1041)
++..+...|+.++|...++++....|.+.. +..+..++...|+.++|+..++++.+..+. +...+..+...+...+..
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCh
Confidence 333444444455555555544433444555 555555666666666666666666554221 223333444455555555
Q ss_pred HHHHHHHHHhccCCCCCCh------hhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCh---HHHHHHHHHHHHC-CCC
Q 001632 749 EQAEIIIHNSFQDNLDLDT------VAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKL---DKALEMFNTARSL-GLS 818 (1041)
Q Consensus 749 ~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~A~~~~~~~~~~-~~~ 818 (1041)
++|+..++.+.. . |+. ......+...... .....+.+ ++|++.++.+.+. ...
T Consensus 167 e~Al~~l~~~~~-~--p~~~~~l~~~~~~~~~r~~~~~--------------~~~~~~r~~~ad~Al~~~~~ll~~~~~~ 229 (765)
T PRK10049 167 APALGAIDDANL-T--PAEKRDLEADAAAELVRLSFMP--------------TRSEKERYAIADRALAQYDALEALWHDN 229 (765)
T ss_pred HHHHHHHHhCCC-C--HHHHHHHHHHHHHHHHHhhccc--------------ccChhHHHHHHHHHHHHHHHHHhhcccC
Confidence 556555554433 1 110 0000000000000 00111223 6677777777753 112
Q ss_pred CCHH-H----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 001632 819 LDEK-A----YMNLVSFYGKAGKTHEASLLFSEMQEEGIK-PGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSP--- 889 (1041)
Q Consensus 819 ~~~~-~----~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~--- 889 (1041)
|+.. . ....+..+...|++++|+..|+++.+.+.. |+. ....+..+|...|++++|+++|+++.+.....
T Consensus 230 p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~ 308 (765)
T PRK10049 230 PDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADL 308 (765)
T ss_pred CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCC
Confidence 2211 1 111133456779999999999999887432 332 12235778999999999999999987642111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------------CCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 890 NSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIP------------PSC---THVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 890 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
.......|..++...|++++|.+.++.+.+.. | |+. ..+..++..+...|+.++|++.+++++.
T Consensus 309 ~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~-P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~ 387 (765)
T PRK10049 309 SDEELADLFYSLLESENYPGALTVTAHTINNS-PPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY 387 (765)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC-CceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 13445666777889999999999999998752 2 221 2455677888999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhcc
Q 001632 955 AGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSV 1024 (1041)
Q Consensus 955 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 1024 (1041)
. .+.+...+..++..+...|++++|+..++++.+..|.+...+...+..+...|++++|+++++++.+.
T Consensus 388 ~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 388 N-APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred h-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 5 44467788888889999999999999999999989999999999999999999999999999988764
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.6e-16 Score=184.71 Aligned_cols=305 Identities=12% Similarity=0.018 Sum_probs=200.3
Q ss_pred HHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHH
Q 001632 669 LIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDA------VAISILVNTL 742 (1041)
Q Consensus 669 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~------~~~~~l~~~~ 742 (1041)
+...+...|+.++|...++++....|.+...+..+..++...|..++|+..++.+.. .|+. .....++...
T Consensus 122 la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~ 198 (765)
T PRK10049 122 LAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLS 198 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhh
Confidence 334444455555555555554444455555555556666666666666666654443 1211 0111111111
Q ss_pred -----HccCCH---HHHHHHHHHhccCC-CCCChh-hHH-HHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHH
Q 001632 743 -----TNHGKH---EQAEIIIHNSFQDN-LDLDTV-AYN-TCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNT 811 (1041)
Q Consensus 743 -----~~~g~~---~~A~~~~~~~~~~~-~~~~~~-~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~ 811 (1041)
...+++ ++|+..++.+.+.. ..|+.. .+. ..+ +.+..+...|++++|+..|+.
T Consensus 199 ~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~----------------d~l~~Ll~~g~~~eA~~~~~~ 262 (765)
T PRK10049 199 FMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI----------------DRLGALLARDRYKDVISEYQR 262 (765)
T ss_pred cccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH----------------HHHHHHHHhhhHHHHHHHHHH
Confidence 112233 66777777776541 122211 111 101 001122345678888888888
Q ss_pred HHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc-----ccHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 001632 812 ARSLGLS-LDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGL-----ISYNIIINVYAAAGLYNEVEKLIQAMQRD 885 (1041)
Q Consensus 812 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 885 (1041)
+.+.+.+ |+. ....+...|...|++++|+..|+++.+.. |.. .....+..++.+.|++++|+++++++.+.
T Consensus 263 ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 263 LKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINN 339 (765)
T ss_pred hhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence 8876532 322 22235778999999999999999988752 322 34556677889999999999999999874
Q ss_pred C-----------CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 001632 886 G-----------FSPN---SFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNE 951 (1041)
Q Consensus 886 g-----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 951 (1041)
. -.|+ ...+..+...+...|+.++|++.++++.+.. |.+...+..++.++...|++++|++.+++
T Consensus 340 ~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~ 418 (765)
T PRK10049 340 SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKK 418 (765)
T ss_pred CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 2 0122 1245567778899999999999999999863 56667889999999999999999999999
Q ss_pred HHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHH
Q 001632 952 SLAAGIIPD-LACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIM 998 (1041)
Q Consensus 952 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 998 (1041)
.++. .|+ ...+..++..+.+.|++++|+..++++.+..|.|+.+.
T Consensus 419 al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 419 AEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9984 564 66777777788999999999999999999999988553
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.1e-15 Score=158.94 Aligned_cols=763 Identities=13% Similarity=0.068 Sum_probs=410.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 001632 177 LSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVF 256 (1041)
Q Consensus 177 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 256 (1041)
.|..|+-++|..+|.-||..|+.+.|- +|.-|.-...+.+...++.++.+..+.++.+.+. .|...+|
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDty 86 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTY 86 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHH
Confidence 378899999999999999999999988 8888887777777788888888888888777764 5778888
Q ss_pred HHHHHHHHhcCChhHHHHHHHH-Hh-------hCCCCCCHHHH--------------HHHHHHHHcCCCHHHHHHHHHHH
Q 001632 257 NFMLSSLHKKSYHRKVIDLWRQ-MM-------DKGVAPTDFTY--------------TLVISSFVKGSLLEEALKTFNEM 314 (1041)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~~~-m~-------~~~~~~~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m 314 (1041)
..|..+|...|+... ++..++ |. ..|+.....-+ ..++....-.|.++.+++++..+
T Consensus 87 t~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 888888888887654 222222 21 12221111111 11222223334444444444433
Q ss_pred HHCCCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 001632 315 KSTGFA-PEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADE 393 (1041)
Q Consensus 315 ~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 393 (1041)
+-.... |-.+ .++-+.. ......++......-.-.|+..+|..++......|+.+.|..++.+|.+.|++.+.
T Consensus 166 Pvsa~~~p~~v----fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 166 PVSAWNAPFQV----FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred CcccccchHHH----HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 322100 1101 1221111 12223333333222111578888998888888899999999999999999888888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHH
Q 001632 394 VIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRF----AYIVM 469 (1041)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l 469 (1041)
+-|-.|+-+ .++...++.++.-|.+.|+.|+..|+...+..+..+|.... .+.+.+.+.. .+..+
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~--------~~e~sq~~hg~tAavrsaa 308 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKY--------GEEGSQLAHGFTAAVRSAA 308 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhh--------cccccchhhhhhHHHHHHH
Confidence 766666655 77888888888888888999998888877666666544221 1122222221 12222
Q ss_pred HHHHHhcC-----CHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHH
Q 001632 470 LQCYVMKE-----DLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKD--QV-DFDEELYRSVMKI 541 (1041)
Q Consensus 470 l~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~~ll~~ 541 (1041)
+.+..... ........+.+..-.|.....+.-.+..-...+|.-++..++-..+..- .. .-++..|..++.-
T Consensus 309 ~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrq 388 (1088)
T KOG4318|consen 309 CRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQ 388 (1088)
T ss_pred hcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHH
Confidence 22211111 1111222222222223311112222222223366666666666655321 11 1234455555555
Q ss_pred HHhcCChhhHHHHHH--HHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHH
Q 001632 542 YCKEGMVTDAEQFVE--EMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKRE 619 (1041)
Q Consensus 542 ~~~~g~~~~A~~~~~--~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 619 (1041)
|++.-+......++. +..+.. -+. .+.+....++....++..+.+..
T Consensus 389 yFrr~e~~~~~~i~~~~qgls~~--l~s-----------------------------e~tp~vsell~~lrkns~lr~lv 437 (1088)
T KOG4318|consen 389 YFRRIERHICSRIYYAGQGLSLN--LNS-----------------------------EDTPRVSELLENLRKNSFLRQLV 437 (1088)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhh--hch-----------------------------hhhHHHHHHHHHhCcchHHHHHh
Confidence 554322211111111 111110 000 00000111111111111000000
Q ss_pred HHHH----HHhhc-----CCchhHHHHHHHHHHHcCCHHHHHH---HHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 001632 620 KILK----LLLHT-----AGGSSVVSQLICKFIRDGMRLTFKF---LMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFK 687 (1041)
Q Consensus 620 ~~~~----~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 687 (1041)
.+.. +.... .+-....++++..+++.-+...+.. +.+...-+ ..|..+++.+....+++.|..+.+
T Consensus 438 ~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~--g~ya~Li~l~~~hdkle~Al~~~~ 515 (1088)
T KOG4318|consen 438 GLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA--GLYALLIKLMDLHDKLEYALSFVD 515 (1088)
T ss_pred hhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHhhhHHHHHHHHHHHhchh
Confidence 0000 00000 0112234555666666655555553 22222111 578888888888899999999888
Q ss_pred Hhh---cCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhccCC
Q 001632 688 AAT---VSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALD--AVAISILVNTLTNHGKHEQAEIIIHNSFQDN 762 (1041)
Q Consensus 688 ~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 762 (1041)
++. .....|..-+..+.+.+.+.+...++..++.++.+.-...+ ..++-.+++.....|+.+.-.++.+-+...|
T Consensus 516 e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslg 595 (1088)
T KOG4318|consen 516 EIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLG 595 (1088)
T ss_pred hhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhh
Confidence 865 34455666788888999999999999999988876422222 3345556666677787777777777666555
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCCHHH
Q 001632 763 LDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNL---VSFYGKAGKTHE 839 (1041)
Q Consensus 763 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~ 839 (1041)
..-. ..++....+.++...|.+.++.. +.+-.-+-.+.+.+-++..++-..++.....+ +..|.+.|+..+
T Consensus 596 l~et----gPl~~vhLrkdd~s~a~ea~e~~--~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~ 669 (1088)
T KOG4318|consen 596 LSET----GPLWMVHLRKDDQSAAQEAPEPE--EQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVD 669 (1088)
T ss_pred hhhc----ccceEEEeeccchhhhhhcchHH--HHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccc
Confidence 4331 22333344556666666666653 34444445555555555543333333322221 334677777777
Q ss_pred HHHHHHHHHH---cCC---------CC---------CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001632 840 ASLLFSEMQE---EGI---------KP---------GLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLV 898 (1041)
Q Consensus 840 A~~~~~~m~~---~g~---------~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 898 (1041)
|..+.+.--- .|- .| +......|+..|.+.|+++.|..+|.+++ +.|+..+...|.
T Consensus 670 a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LA 746 (1088)
T KOG4318|consen 670 AGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLA 746 (1088)
T ss_pred hhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHH
Confidence 7665532100 000 00 00111336778888999999999999887 677888888887
Q ss_pred HHHHhcCC---HHHHHHHHHHHHHCC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001632 899 QAYTEAAK---YSEAEETINSMQKQG--IPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMD 973 (1041)
Q Consensus 899 ~~~~~~g~---~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 973 (1041)
..+.+... +-++....+...+.. .+.+...|...+...++-.+.+.|.+.+++..++....+..++...++.+..
T Consensus 747 sIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k~L~~ 826 (1088)
T KOG4318|consen 747 SILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTADELSDFLKCLVK 826 (1088)
T ss_pred HHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHh
Confidence 77765543 334444444444421 1222223333344444445566888999998887555577788888887776
Q ss_pred cCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHH
Q 001632 974 HGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEAND 1016 (1041)
Q Consensus 974 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~ 1016 (1041)
.. -..|....+ +.......-..++..+.+.-.+.||..
T Consensus 827 nd-~~aa~sha~----Ges~~~l~tsRli~~llRrlgl~EA~~ 864 (1088)
T KOG4318|consen 827 ND-QLAAQSHAS----GESSKELLTSRLINILLRRLGLAEALS 864 (1088)
T ss_pred cC-HHHHHhccc----ccchhhhhhHHHHHHHHHHhhHHHHHH
Confidence 65 122221111 111122233345555566666666665
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-13 Score=142.16 Aligned_cols=613 Identities=9% Similarity=0.026 Sum_probs=395.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001632 302 SLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLF 381 (1041)
Q Consensus 302 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 381 (1041)
+++..|.-++....+.+ +-+...|-+-...--..|.+..|..+...=.+. ++-+...|.-- ++....+.|..+.
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLea----iRLhp~d~aK~vv 338 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEA----IRLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHH----HhcCChHHHHHHH
Confidence 56778888888888875 224456655555555677777777665543332 22234444332 3556667777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 001632 382 SEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWL 461 (1041)
Q Consensus 382 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~ 461 (1041)
...++.- +-....|- .+---..+...-.+++.+..+. ++.++..|- +-....+.+.|.-++.+..+-- +.
T Consensus 339 A~Avr~~-P~Sv~lW~---kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWK----aAVelE~~~darilL~rAvecc-p~ 408 (913)
T KOG0495|consen 339 ANAVRFL-PTSVRLWL---KAADLESDTKNKKRVLRKALEH-IPRSVRLWK----AAVELEEPEDARILLERAVECC-PQ 408 (913)
T ss_pred HHHHHhC-CCChhhhh---hHHhhhhHHHHHHHHHHHHHHh-CCchHHHHH----HHHhccChHHHHHHHHHHHHhc-cc
Confidence 7777652 22222332 2222223344455666666654 333444443 3344556666887887776642 22
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCCCCHHHHHH
Q 001632 462 SRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHI----RKDQVDFDEELYRS 537 (1041)
Q Consensus 462 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~~ 537 (1041)
+.. |.-++.+...++.|..++++..+.-+.+...|.+-...--.+|+.+...+++++- ...|+..+...|..
T Consensus 409 s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~ 484 (913)
T KOG0495|consen 409 SMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLK 484 (913)
T ss_pred hHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHH
Confidence 333 3445667777888999999988887778888888888778888888888887764 44577778777777
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHH
Q 001632 538 VMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSK 617 (1041)
Q Consensus 538 ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1041)
=...|-..|..-.+..++...+..|+.- +...+.|..-...+.+.+.++-
T Consensus 485 eAe~~e~agsv~TcQAIi~avigigvEe------------------------------ed~~~tw~~da~~~~k~~~~~c 534 (913)
T KOG0495|consen 485 EAEACEDAGSVITCQAIIRAVIGIGVEE------------------------------EDRKSTWLDDAQSCEKRPAIEC 534 (913)
T ss_pred HHHHHhhcCChhhHHHHHHHHHhhcccc------------------------------chhHhHHhhhHHHHHhcchHHH
Confidence 6666766666666555555555544321 1122233333344444444555
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCCh
Q 001632 618 REKILKLLLHTAGGSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGK 697 (1041)
Q Consensus 618 a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 697 (1041)
|..++...+.. ++.+...+......--..|..++-..+|.++...+|...
T Consensus 535 arAVya~alqv------------------------------fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae 584 (913)
T KOG0495|consen 535 ARAVYAHALQV------------------------------FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAE 584 (913)
T ss_pred HHHHHHHHHhh------------------------------ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcch
Confidence 55554444432 122233334444444455666666666666665556666
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHH
Q 001632 698 LVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAM 777 (1041)
Q Consensus 698 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 777 (1041)
..|-..+..+-..|+...|..++.++.+.... +...|-..+........+++|..+|.+....... ..+|.--+..
T Consensus 585 ~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgT--eRv~mKs~~~- 660 (913)
T KOG0495|consen 585 ILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGT--ERVWMKSANL- 660 (913)
T ss_pred hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc--chhhHHHhHH-
Confidence 66666666666666666666666666665322 4445555566666666666666666665554332 2222222221
Q ss_pred HhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc-
Q 001632 778 LGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGL- 856 (1041)
Q Consensus 778 ~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 856 (1041)
-.-.++.++|+++++..++. ++.-...|..+...+-+.++++.|...|..=.+. -|+.
T Consensus 661 ------------------er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~i 719 (913)
T KOG0495|consen 661 ------------------ERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSI 719 (913)
T ss_pred ------------------HHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCc
Confidence 11245677777777776664 2344557888888888888888888887765554 3444
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 001632 857 ISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAF 936 (1041)
Q Consensus 857 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 936 (1041)
..|..|.+.-.+.|.+-.|..+|++..-. -+.+...|...|..-.+.|+.+.|..+..+.++. ++.+-..|..-|.+.
T Consensus 720 pLWllLakleEk~~~~~rAR~ildrarlk-NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le 797 (913)
T KOG0495|consen 720 PLWLLLAKLEEKDGQLVRARSILDRARLK-NPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLE 797 (913)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHhc-CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhc
Confidence 55777777778888888999998888765 4667788888888888999999998888887765 466666777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHH
Q 001632 937 SKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEAND 1016 (1041)
Q Consensus 937 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~ 1016 (1041)
-+.++-.+.+..+++ +..|+.....+...+....++++|...|+++....|.+..++.-+...+...|..++-.+
T Consensus 798 ~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~ke 872 (913)
T KOG0495|consen 798 PRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKE 872 (913)
T ss_pred cCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHH
Confidence 777775555554444 677888888888899999999999999999999999998999888999999999999999
Q ss_pred HHHHhhccCc
Q 001632 1017 ILDSMNSVRI 1026 (1041)
Q Consensus 1017 ~~~~~~~~~~ 1026 (1041)
++++-..+.-
T Consensus 873 v~~~c~~~EP 882 (913)
T KOG0495|consen 873 VLKKCETAEP 882 (913)
T ss_pred HHHHHhccCC
Confidence 9988766544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-16 Score=182.57 Aligned_cols=265 Identities=11% Similarity=0.082 Sum_probs=188.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001632 664 EVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLT 743 (1041)
Q Consensus 664 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~ 743 (1041)
..+..+...+...|++++|...++.+....|.+...+..++.++...|++++|...++++......+ ...+.. +..+.
T Consensus 111 ~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~-~~~l~ 188 (656)
T PRK15174 111 EDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIAT-CLSFL 188 (656)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHH-HHHHH
Confidence 3445556667777777788887777666566777788888888888888888888888776653322 222222 23467
Q ss_pred ccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHH
Q 001632 744 NHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKA 823 (1041)
Q Consensus 744 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 823 (1041)
..|++++|+..++.+.+..+.++...+..+...+. ..|++++|+..|+++.+.. +.+...
T Consensus 189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~-------------------~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLC-------------------AVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH-------------------HCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 77888888888888776654444444433344333 4455556666666666554 456777
Q ss_pred HHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001632 824 YMNLVSFYGKAGKTHE----ASLLFSEMQEEGIKPG-LISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLV 898 (1041)
Q Consensus 824 ~~~l~~~~~~~g~~~~----A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 898 (1041)
+..+...|...|++++ |...|++..+. .|+ ...+..+...+.+.|++++|+..+++..+. .+.+...+..+.
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-~P~~~~a~~~La 325 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT-HPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 8888888888998885 78888888875 444 456778888888999999999999988875 344455677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001632 899 QAYTEAAKYSEAEETINSMQKQGIPPSCT-HVNHLLSAFSKAGLMAEATRVYNESLAA 955 (1041)
Q Consensus 899 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 955 (1041)
.+|.+.|++++|...|+.+.+.+ |+.. .+..++.++...|+.++|+..|+++++.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 88888999999999998888753 5543 3445677888889999999999988774
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.4e-17 Score=181.66 Aligned_cols=66 Identities=8% Similarity=0.105 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChhhHHHHHHHHhhCCCCCCHH
Q 001632 501 NDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCK---EGMVTDAEQFVEEMGKNGSLKDSK 568 (1041)
Q Consensus 501 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~ 568 (1041)
..++..+.+.|++++|..+++++.+. .|+...+..++..++. .|+.+++..++++|.+.++.|++.
T Consensus 286 ~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 286 LALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444432 3444455544444443 335555555555555554444443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-15 Score=175.24 Aligned_cols=435 Identities=11% Similarity=0.035 Sum_probs=286.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001632 186 YTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHK 265 (1041)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 265 (1041)
+......+.+.|++++|.+.|.+.++. .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 444556677788888888888887764 5667778888888888888888888888877764 3456678888888888
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 001632 266 KSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSL 345 (1041)
Q Consensus 266 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 345 (1041)
.|++++|+..|......+-..+......+...+. ..+........+.. +++...+..+.. +...........-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK-----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH-----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence 8888888887766654322122111111111111 12223333333321 223333333322 2222222222211
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001632 346 YKDMRSRGLIPS-NYTCASLLSL---YYKNENYSKALSLFSEMEKFK-VAA-DEVIYGLLIRIYGKLGLYEDAQKTFAET 419 (1041)
Q Consensus 346 ~~~m~~~~~~p~-~~~~~~li~~---~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 419 (1041)
+....+ ..++ ...+..+... ....+++++|.+.|+...+.+ ..| ....+..+...+...|++++|...|++.
T Consensus 280 ~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 280 LEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 221111 1111 0111111111 123467889999999888764 222 4456777788888899999999999998
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhH
Q 001632 420 EQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGS 499 (1041)
Q Consensus 420 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 499 (1041)
.+... .....|..+...+...|++++|...++...+.. +.+..++..+...+...|++++|...|++..+..+.+...
T Consensus 358 l~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~ 435 (615)
T TIGR00990 358 IELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS 435 (615)
T ss_pred HHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHH
Confidence 87532 245677888888889999999999999887764 3456788888889999999999999999999988888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCHHHHHHHHHHHhc
Q 001632 500 CNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHG 579 (1041)
Q Consensus 500 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 579 (1041)
+..+..++.+.|++++|...|+...+. .+.+...+..+..++...|++++|+..|+...... |+...
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~---------- 502 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETKP---------- 502 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--Ccccc----------
Confidence 888999999999999999999998875 34467788888899999999999999998877652 11000
Q ss_pred cCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHhhcCCchhHHHHHHHHHHHcCCHHHHHHHHHcCC
Q 001632 580 GCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDGMRLTFKFLMKLGY 659 (1041)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 659 (1041)
.
T Consensus 503 -------------------------------------------------------------------------------~ 503 (615)
T TIGR00990 503 -------------------------------------------------------------------------------M 503 (615)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred CCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 001632 660 ILDD-EVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQ 726 (1041)
Q Consensus 660 ~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 726 (1041)
..+. ..+...+..+...|++++|..+++++....+.+...+..+...+...|++++|+..|++..+.
T Consensus 504 ~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 504 YMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 0000 011112222334578888888888865555666677888888888888888888888887664
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-13 Score=149.50 Aligned_cols=660 Identities=13% Similarity=0.090 Sum_probs=334.0
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChH
Q 001632 261 SSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSD 340 (1041)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 340 (1041)
+.+...|+.++|..++.+.++.. +.....|..|...|-..|+.+.+...+-.....+ +.|...|..+.......|+++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 33444577777777777776652 3455667777777777777777766655444432 335566666666666777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHhcCCHHHHHHHH
Q 001632 341 EALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGL----LIRIYGKLGLYEDAQKTF 416 (1041)
Q Consensus 341 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~ 416 (1041)
.|.-.|.+..+... ++...+---+..|-+.|+...|..-|.++.....+.|...+.. .++.+...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77777777666532 2344444445566667777777777777666533223322222 244455555556666666
Q ss_pred HHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC--
Q 001632 417 AETEQL-GLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTG-- 493 (1041)
Q Consensus 417 ~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-- 493 (1041)
+..... +-..+...++.++..+.+...++.|......+..+...+|..-+.+= .+ + ...+......+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~----~~-~-----~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD----ER-R-----REEPNALCEVGKE 373 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh----hh-c-----cccccccccCCCC
Confidence 655542 12234455666666666666777766666665553333332211100 00 0 00000000011
Q ss_pred C-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCHHHH
Q 001632 494 L-PDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQ--VDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFI 570 (1041)
Q Consensus 494 ~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 570 (1041)
. .+..++ -+.-++.+.+..+....+.....+.. +.-+...|.-+..+|...|++++|+.+|..+......
T Consensus 374 ~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~------ 446 (895)
T KOG2076|consen 374 LSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY------ 446 (895)
T ss_pred CCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc------
Confidence 0 222231 11222223333233333333333333 3344566777777777777777777777777665110
Q ss_pred HHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHhhcCCchhHHHHHHHHHHHcCCHHH
Q 001632 571 QTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDGMRLT 650 (1041)
Q Consensus 571 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 650 (1041)
.....|..++..|...+.+++|.+.++.++...|
T Consensus 447 --------------------------~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p-------------------- 480 (895)
T KOG2076|consen 447 --------------------------QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP-------------------- 480 (895)
T ss_pred --------------------------cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC--------------------
Confidence 0112333333444444444444444444333211
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhc---------CCCCChHHHHHHHHHHHhcCChhHHHHHHH
Q 001632 651 FKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATV---------SCKPGKLVLRSMIDAYAKCGKAEDVYLLYK 721 (1041)
Q Consensus 651 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 721 (1041)
.+..+-.+|...+-+.|+.++|.+.++.+.. ..+++..+.-...+.+.+.|+.++-+.+..
T Consensus 481 ----------~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~ 550 (895)
T KOG2076|consen 481 ----------DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAS 550 (895)
T ss_pred ----------CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 1333444555555555566655555555321 112222333333444444455444333333
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCC
Q 001632 722 EATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRK 801 (1041)
Q Consensus 722 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 801 (1041)
.|+..+.. ...+ + .+..++... .....+..........++.+..+.++......-.
T Consensus 551 ~Lv~~~~~------~~~~--f---~~~~k~r~~--~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l----------- 606 (895)
T KOG2076|consen 551 TLVDDFLK------KRYI--F---PRNKKKRRR--AIAGTTSKRYSELLKQIIRAREKATDDNVMEKAL----------- 606 (895)
T ss_pred HHHHHHHH------HHHh--c---chHHHHHHH--hhccccccccchhHHHHHHHHhccCchHHhhhcc-----------
Confidence 33321100 0000 0 000000000 0000000111111111222222221111000000
Q ss_pred hHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCcc----cHHHHHHHHHHcCCHHH
Q 001632 802 LDKALEMFNTARSLGLSLDE--KAYMNLVSFYGKAGKTHEASLLFSEMQEEGI-KPGLI----SYNIIINVYAAAGLYNE 874 (1041)
Q Consensus 802 ~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----~~~~l~~~~~~~g~~~~ 874 (1041)
... ..+......++..+. ..+.-++..+++.+++++|+.+...+..... .-+.. .-...+.+....+++..
T Consensus 607 -~d~-~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~ 684 (895)
T KOG2076|consen 607 -SDG-TEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGD 684 (895)
T ss_pred -cch-hhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHH
Confidence 000 111222223332222 2445678889999999999999998887522 11222 12345667788999999
Q ss_pred HHHHHHHHHHc-CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHHhcCCHHHHHHH
Q 001632 875 VEKLIQAMQRD-GF--SPN-SFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSC--THVNHLLSAFSKAGLMAEATRV 948 (1041)
Q Consensus 875 A~~~~~~m~~~-g~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~ 948 (1041)
|...+..|... ++ .|. ...|+...+...+.|+-.-=...+..+... +|+. ..+...++.+...+.+.-|+..
T Consensus 685 a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~--~~~~~~~l~~i~gh~~~~~~s~~~Al~~ 762 (895)
T KOG2076|consen 685 AFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVK--NKDDTPPLALIYGHNLFVNASFKHALQE 762 (895)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CccCCcceeeeechhHhhccchHHHHHH
Confidence 99999999874 11 122 223454444445555433333333333332 2322 3333445666778999999998
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHH----------hcCChHHHHHHHHHHHhccCC--hHHHHHHHHHHHHhcCChhHHH
Q 001632 949 YNESLAAGIIPD-LACYRTMLKGYM----------DHGYIEEGINLFEEVRESSES--DKFIMSAAVHLYRYAGKEHEAN 1015 (1041)
Q Consensus 949 ~~~~~~~~~~p~-~~~~~~l~~~~~----------~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~eA~ 1015 (1041)
|-++... .|| +.+-.++.-++. ++-..-+++.++.+..+.... --.+++.++.+|...|-.--|.
T Consensus 763 y~ra~~~--~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~ 840 (895)
T KOG2076|consen 763 YMRAFRQ--NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAV 840 (895)
T ss_pred HHHHHHh--CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHH
Confidence 8887763 555 433333333332 344577888998887765554 5689999999999999999999
Q ss_pred HHHHHhhccCc
Q 001632 1016 DILDSMNSVRI 1026 (1041)
Q Consensus 1016 ~~~~~~~~~~~ 1026 (1041)
...++.++...
T Consensus 841 ~YYekvL~~~p 851 (895)
T KOG2076|consen 841 SYYEKVLEVSP 851 (895)
T ss_pred HHHHHHhCCCc
Confidence 99999988754
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.3e-15 Score=172.56 Aligned_cols=194 Identities=10% Similarity=0.054 Sum_probs=96.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHH
Q 001632 827 LVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDG-----FSPNSFTYLSLVQAY 901 (1041)
Q Consensus 827 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-----~~~~~~~~~~l~~~~ 901 (1041)
.+-++.+.|++.+++..++.+...|.+.....-....++|...+..++|+.+|+++.... .+++......|..+|
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 344445555555555555555554432222233445555555555555555555554321 112222234455555
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-----------CCCh--h-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001632 902 TEAAKYSEAEETINSMQKQGI-----------PPSC--T-HVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTM 967 (1041)
Q Consensus 902 ~~~g~~~~A~~~~~~~~~~~~-----------~p~~--~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 967 (1041)
...+++++|..+++.+.+..- .|+. . .+..++..+...|+..+|++.+++++.. -|-|......+
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~ 456 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIAL 456 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHH
Confidence 555555555555555554200 0111 1 2223444455555555555555555543 23355555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 001632 968 LKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSM 1021 (1041)
Q Consensus 968 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 1021 (1041)
...+...|...+|+..++.+....|.+..+....+.++...|+|++|..+++.+
T Consensus 457 A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 457 ASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-14 Score=166.68 Aligned_cols=205 Identities=12% Similarity=0.074 Sum_probs=168.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCcccHHHHHHH
Q 001632 791 ERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGI-----KPGLISYNIIINV 865 (1041)
Q Consensus 791 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~~~~~l~~~ 865 (1041)
+++.+..+.++..++++.|+.+...+.+....+-.++.++|...++.++|..+++++..... .++......|.-+
T Consensus 297 Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA 376 (822)
T PRK14574 297 DRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS 376 (822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence 45556778889999999999999888776677888999999999999999999999976421 1122334678999
Q ss_pred HHHcCCHHHHHHHHHHHHHcC-------------CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHH
Q 001632 866 YAAAGLYNEVEKLIQAMQRDG-------------FSPNSFT-YLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNH 931 (1041)
Q Consensus 866 ~~~~g~~~~A~~~~~~m~~~g-------------~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 931 (1041)
|...+++++|..+++++.+.. ..||-.. +..++..+.-.|+..+|++.++++.... |-|......
T Consensus 377 ~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~ 455 (822)
T PRK14574 377 LNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIA 455 (822)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 999999999999999998731 1123333 3456677889999999999999999864 667788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHH
Q 001632 932 LLSAFSKAGLMAEATRVYNESLAAGIIP-DLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIM 998 (1041)
Q Consensus 932 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 998 (1041)
+++++...|...+|++.++.++. ..| +..+...++..+.+.|++.+|..+.+.+.+..|.|+.+-
T Consensus 456 ~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 456 LASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 99999999999999999987776 455 566777888899999999999999999999999988543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-12 Score=133.70 Aligned_cols=621 Identities=10% Similarity=0.076 Sum_probs=416.9
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 001632 232 GNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTF 311 (1041)
Q Consensus 232 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 311 (1041)
++..+|..+++...+.+ +-++..|-.-.+.=-..|++..|..+...--+. ++.+...|--- ++....+.|..+.
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLea----iRLhp~d~aK~vv 338 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEA----IRLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHH----HhcCChHHHHHHH
Confidence 46777888888877765 334445544444444555665555544333222 22333333222 2334455566666
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 001632 312 NEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAA 391 (1041)
Q Consensus 312 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 391 (1041)
-..... -|+.+. ..+.+.--..+...-.+++++..+. .|+.. .|-.+.....+.+.|.-++.+..+. ++.
T Consensus 339 A~Avr~--~P~Sv~--lW~kA~dLE~~~~~K~RVlRKALe~--iP~sv---~LWKaAVelE~~~darilL~rAvec-cp~ 408 (913)
T KOG0495|consen 339 ANAVRF--LPTSVR--LWLKAADLESDTKNKKRVLRKALEH--IPRSV---RLWKAAVELEEPEDARILLERAVEC-CPQ 408 (913)
T ss_pred HHHHHh--CCCChh--hhhhHHhhhhHHHHHHHHHHHHHHh--CCchH---HHHHHHHhccChHHHHHHHHHHHHh-ccc
Confidence 655554 343332 1222222223333444556655553 34332 2233445556677788888888775 232
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCCHHHHH
Q 001632 392 DEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELM----KSRNMWLSRFAYI 467 (1041)
Q Consensus 392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~ 467 (1041)
... |.-+|.+..-++.|.++++...+. ++.+..+|.+-...--.+|+.+....++.+- ...|+..+...|-
T Consensus 409 s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl 483 (913)
T KOG0495|consen 409 SMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWL 483 (913)
T ss_pred hHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHH
Confidence 333 334566677788888888888775 5567777877777777788888888777654 4467788888887
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCC---CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 001632 468 VMLQCYVMKEDLGSAEGTFQTLAKTGL---PDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCK 544 (1041)
Q Consensus 468 ~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 544 (1041)
.=...|-+.|..-.+..+...+...|. ....+|..-...|.+.+.++-|+.+|....+. ++-+...|......--.
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKS 562 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHh
Confidence 777778777888778888887777776 34567777778888888888888888887765 33455666666665566
Q ss_pred cCChhhHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHH
Q 001632 545 EGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKL 624 (1041)
Q Consensus 545 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 624 (1041)
.|..+.-..+|++.... .|
T Consensus 563 hgt~Esl~Allqkav~~--~p----------------------------------------------------------- 581 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQ--CP----------------------------------------------------------- 581 (913)
T ss_pred cCcHHHHHHHHHHHHHh--CC-----------------------------------------------------------
Confidence 66666666666666554 11
Q ss_pred HhhcCCchhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHH
Q 001632 625 LLHTAGGSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMI 704 (1041)
Q Consensus 625 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 704 (1041)
..+..+.-....+-..|+...|+.++..+-...+.+..+|-+-+
T Consensus 582 ------------------------------------kae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaav 625 (913)
T KOG0495|consen 582 ------------------------------------KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAV 625 (913)
T ss_pred ------------------------------------cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 11122222334444567888888888887766677888999888
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChh
Q 001632 705 DAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLH 784 (1041)
Q Consensus 705 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 784 (1041)
........++.|..+|.+.... .|+...|.--+....-.++.++|..++++.++..+..+ ..|-.+.+
T Consensus 626 Kle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~-Kl~lmlGQ--------- 693 (913)
T KOG0495|consen 626 KLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFH-KLWLMLGQ--------- 693 (913)
T ss_pred HHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH-HHHHHHhH---------
Confidence 8888999999999999888775 46777777777777778889999999988887754322 12333333
Q ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Q 001632 785 FAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIIN 864 (1041)
Q Consensus 785 ~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 864 (1041)
++.+.++++.|.+.|..-.+. .+..+-.|-.|...=.+.|.+-.|..+|++..-++.+ +...|...|+
T Consensus 694 ----------i~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir 761 (913)
T KOG0495|consen 694 ----------IEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIR 761 (913)
T ss_pred ----------HHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHH
Confidence 234455677777777666654 2445567888888888899999999999999887543 6788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHH
Q 001632 865 VYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAE 944 (1041)
Q Consensus 865 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 944 (1041)
+-.+.|+.+.|..+..+.++. ++.+...|.--|....+-++-.+....+++ +.-|+.+...++..|....++++
T Consensus 762 ~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~k 835 (913)
T KOG0495|consen 762 MELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEK 835 (913)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHH
Confidence 999999999999998888775 666777787777766666664444444333 45677888888999999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHH
Q 001632 945 ATRVYNESLAAGIIP-DLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVH 1003 (1041)
Q Consensus 945 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 1003 (1041)
|.+.|++.++. .| ...+|..+..-+.++|.-+.-.+++.+.....|.....+..+..
T Consensus 836 ar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 836 AREWFERAVKK--DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 99999999985 44 35567677778889998888888888877666665555544443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.3e-14 Score=150.91 Aligned_cols=733 Identities=14% Similarity=0.063 Sum_probs=405.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 001632 204 QTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKG 283 (1041)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 283 (1041)
.++..+...|+.|+-+||..+|.-||..|+.+.|- +|.-|+-...+.+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45667888899999999999999999999999998 9999999988889999999999999888887765
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHH---HHHHHHHHHH----CCCC-CCHhh-------------HHHHHHHHHhcCChHHH
Q 001632 284 VAPTDFTYTLVISSFVKGSLLEE---ALKTFNEMKS----TGFA-PEEVT-------------YSQLISLSIKHGKSDEA 342 (1041)
Q Consensus 284 ~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~----~~~~-p~~~~-------------~~~li~~~~~~g~~~~A 342 (1041)
.|...||..|..+|...||+.. .++.+..+.. .|+- |.... -.+.+......|.++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 5778899999999999999765 2222222111 1211 11111 11223333444555555
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 343 LSLYKDMRSRG-LIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQ 421 (1041)
Q Consensus 343 ~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 421 (1041)
++++..+.... ..|... .++-+.... ...++++.......-.++..+|..+++.-...|+.+.|..++.+|.+
T Consensus 159 lkll~~~Pvsa~~~p~~v----fLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQV----FLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHhhCCcccccchHHH----HHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 55554442211 011111 233322222 22333333333221147888888888888888888888888888888
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCh----
Q 001632 422 LGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDA---- 497 (1041)
Q Consensus 422 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---- 497 (1041)
.|++.+..-|-.|+-+ .++..-+..++.-|.+.|+.|+..|+.--+..+..+|....+. .+.+..
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~--------e~sq~~hg~t 301 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE--------EGSQLAHGFT 301 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc--------cccchhhhhh
Confidence 8888777777776655 6777777778888888888888888877666666644422211 122222
Q ss_pred -hHHHHHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCHHHHH
Q 001632 498 -GSCNDMLNLYIKLDLT-----EKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQ 571 (1041)
Q Consensus 498 -~~~~~l~~~~~~~~~~-----~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 571 (1041)
..+..+.++....... .-....+....-.|+......|...+. ....|.-++..++...|..--...+
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s----- 375 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDS----- 375 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccC-----
Confidence 2233333221111111 111111111111233333333332222 2225666666666655544311111
Q ss_pred HHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCccc--HHHHHHHHHHHhhcCCchhHHHHHHHHHHHcCCHH
Q 001632 572 TFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDN--FSKREKILKLLLHTAGGSSVVSQLICKFIRDGMRL 649 (1041)
Q Consensus 572 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 649 (1041)
...+.+.......|....+ ..+-.....+.+....++.....++....+. +..
T Consensus 376 ------------------------~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-rkn 430 (1088)
T KOG4318|consen 376 ------------------------GQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-RKN 430 (1088)
T ss_pred ------------------------cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-Ccc
Confidence 1111122222222211110 1111111111111111111111111111100 000
Q ss_pred HHH---------HHHHcC------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChh
Q 001632 650 TFK---------FLMKLG------YILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAE 714 (1041)
Q Consensus 650 ~a~---------~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 714 (1041)
.+. ++.+.- ..+-..+...++..+....+..+++..-++..... -...|..|++.++...+.+
T Consensus 431 s~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~l--f~g~ya~Li~l~~~hdkle 508 (1088)
T KOG4318|consen 431 SFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLL--FAGLYALLIKLMDLHDKLE 508 (1088)
T ss_pred hHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHhhhHHHHHHHH
Confidence 000 111110 11112244555566666666666665555544211 1267899999999999999
Q ss_pred HHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCC--hhhHHHHHHHHHhcCChhHHHHHH
Q 001632 715 DVYLLYKEATAQ--GCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLD--TVAYNTCIKAMLGAGKLHFAASIY 790 (1041)
Q Consensus 715 ~A~~~~~~~~~~--g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~ 790 (1041)
.|..+..+.... .+..|..-+..+.+.+.+.+....+..+++++...-...+ ..+.-.+..+....|+.+.-..++
T Consensus 509 ~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~ 588 (1088)
T KOG4318|consen 509 YALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLA 588 (1088)
T ss_pred HHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHH
Confidence 999999988653 2445666788899999999999999999998877432222 233444555666677777777766
Q ss_pred HHHH------------HHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHH---HcCC-
Q 001632 791 ERML------------VYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGK--AGKTHEASLLFSEMQ---EEGI- 852 (1041)
Q Consensus 791 ~~~~------------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~m~---~~g~- 852 (1041)
+-.. +..+.++...|++.++..... ..|.+.....+...+-+ ...++++..+-..+. +.|-
T Consensus 589 d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qk-yk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~ 667 (1088)
T KOG4318|consen 589 DILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQK-YKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSC 667 (1088)
T ss_pred HHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHH-hcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccc
Confidence 6554 334556777777777766543 24555555444444432 233444433322221 1110
Q ss_pred --------CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001632 853 --------KPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPP 924 (1041)
Q Consensus 853 --------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 924 (1041)
.|...+-+.- +.|...|...-.+.+.+.+.+.| ...-|+..|.+.|+++.|..++.++. +.|
T Consensus 668 ~~a~di~etpG~r~r~~R-Dr~~de~e~~~lEll~elt~~lg------~~dRLL~sy~~~g~~erA~glwnK~Q---V~k 737 (1088)
T KOG4318|consen 668 VDAGDITETPGVRCRNGR-DRDTDEGEIVPLELLLELTHELG------KNDRLLQSYLEEGRIERASGLWNKDQ---VSK 737 (1088)
T ss_pred cchhhccccCcccccCCC-ccccccCccccHHHHHHHHhHhH------HHHHHHHHHHhhhHHHHHHhHHhhCc---CCc
Confidence 0111100000 22333333333444444444432 22227888999999999999999988 678
Q ss_pred ChhHHHHHHHHHHhcC---CHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCChHHHH
Q 001632 925 SCTHVNHLLSAFSKAG---LMAEATRVYNESLAAG--IIPDLACYRTMLKGYMDHGYIEEGINLFEEVRES-SESDKFIM 998 (1041)
Q Consensus 925 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~ 998 (1041)
+......|+..+.+.. +.-++...-++..+.. .+.+...|.--+....+-.+.+.|.+.|++..+. .+.+...+
T Consensus 738 ~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~tad~l 817 (1088)
T KOG4318|consen 738 SPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTADEL 817 (1088)
T ss_pred chHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcHHHH
Confidence 8888889999887765 3444444444443321 1223333333233334556677899999997664 55677888
Q ss_pred HHHHHHHHhcC
Q 001632 999 SAAVHLYRYAG 1009 (1041)
Q Consensus 999 ~~l~~~~~~~g 1009 (1041)
..+.+++....
T Consensus 818 s~f~k~L~~nd 828 (1088)
T KOG4318|consen 818 SDFLKCLVKND 828 (1088)
T ss_pred HHHHHHHHhcC
Confidence 88888887654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.1e-14 Score=140.89 Aligned_cols=333 Identities=14% Similarity=0.129 Sum_probs=209.2
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCChh-HHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 001632 230 RWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHK--KSYHR-KVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEE 306 (1041)
Q Consensus 230 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~~-~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 306 (1041)
.+|.+.++.-+|+.|+..|++.+...-..|....+- ..++- .-.+.|-.|.+.|-. +..+| +.|++.+
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--------K~G~vAd 197 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--------KSGAVAD 197 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--------ccccHHH
Confidence 345555555666666666655555554444443332 22221 112334444443321 11222 3344433
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001632 307 ALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEK 386 (1041)
Q Consensus 307 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 386 (1041)
-+|+.. +.+..+|.+||.++|+-...+.|.++|++......+.+..+||.+|.+-. +....+++.+|..
T Consensus 198 --L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMis 266 (625)
T KOG4422|consen 198 --LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMIS 266 (625)
T ss_pred --HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHH
Confidence 223322 23456777777777777777777777777766666667777777776543 2223667777777
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHH----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHH----HhC
Q 001632 387 FKVAADEVIYGLLIRIYGKLGLYEDA----QKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEK-ALDVIELM----KSR 457 (1041)
Q Consensus 387 ~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-A~~~~~~~----~~~ 457 (1041)
..+.||..|+|.++.+..+.|+++.| .+++.+|.+.|+.|...+|..+|..+++.++..+ |..++.++ ..+
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK 346 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGK 346 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccC
Confidence 77777777777777777777766543 4555667777777777777777777777666543 33333333 222
Q ss_pred CCCC----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-----CC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 458 NMWL----SRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGL-----PD---AGSCNDMLNLYIKLDLTEKAKGFIAHIRK 525 (1041)
Q Consensus 458 ~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 525 (1041)
.++| +...+...+..|.+..|.+-|.++..-+..... ++ ...|..+....+.....+....+|+.|.-
T Consensus 347 ~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP 426 (625)
T KOG4422|consen 347 TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP 426 (625)
T ss_pred cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222 344566667777777777777776655443211 22 23466777888888889999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCC
Q 001632 526 DQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCT 582 (1041)
Q Consensus 526 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 582 (1041)
.-.-|+..+...++++..-.|.++-.-+++.++...|..-+......++..+++...
T Consensus 427 ~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~ 483 (625)
T KOG4422|consen 427 SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL 483 (625)
T ss_pred ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC
Confidence 777788888889999888889999888899998888877777777777777766553
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-15 Score=148.53 Aligned_cols=491 Identities=13% Similarity=0.087 Sum_probs=315.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHhHHHHHHHHHHHcCC-C----ChhHHHHH
Q 001632 430 TYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAY-IVMLQCYVMKEDLGSAEGTFQTLAKTGL-P----DAGSCNDM 503 (1041)
Q Consensus 430 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~----~~~~~~~l 503 (1041)
+...|.+-|.......+|+..++-+.+...-|+.-.+ ..+...+.+..++..|++.|+..+..-+ . .+...+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 3344556666667777888888877776666665433 2345567788888889998888877655 2 34456666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCC
Q 001632 504 LNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTE 583 (1041)
Q Consensus 504 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 583 (1041)
...+.+.|+++.|...|+...+. .|+..+-..|+-+++.-|+-+.-.+.|.+|......||..-|
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddky------------- 347 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKY------------- 347 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccc-------------
Confidence 67788999999999999998875 578777666777777789999999999999887555553221
Q ss_pred cccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHhhcCCchhHHHHHHHHHHHcCCHHHHHH-------HHH
Q 001632 584 NAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDGMRLTFKF-------LMK 656 (1041)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~-------~~~ 656 (1041)
+...++.+....... .-+..+...-+..+. .|.. ++.
T Consensus 348 -------i~~~ddp~~~ll~ea----------------------------i~nd~lk~~ek~~ka-~aek~i~ta~kiia 391 (840)
T KOG2003|consen 348 -------IKEKDDPDDNLLNEA----------------------------IKNDHLKNMEKENKA-DAEKAIITAAKIIA 391 (840)
T ss_pred -------cCCcCCcchHHHHHH----------------------------HhhHHHHHHHHhhhh-hHHHHHHHHHHHhc
Confidence 111111111000000 000001111111110 1111 111
Q ss_pred cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 001632 657 LGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAIS 736 (1041)
Q Consensus 657 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 736 (1041)
.-+.|+-.. +| +-..+.+..-. ..+.-...-..-...|.++|+++.|+++++-...+.-+.....-+
T Consensus 392 pvi~~~fa~------g~------dwcle~lk~s~-~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~ 458 (840)
T KOG2003|consen 392 PVIAPDFAA------GC------DWCLESLKASQ-HAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAAN 458 (840)
T ss_pred cccccchhc------cc------HHHHHHHHHhh-hhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhh
Confidence 112221110 00 11111111100 000011111122345778889999988888777653222222222
Q ss_pred HHHHH--HHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 001632 737 ILVNT--LTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARS 814 (1041)
Q Consensus 737 ~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 814 (1041)
.|-.. +....++..|.++....+.. --||.. ++...|+ .....|++++|.+.|++.+.
T Consensus 459 nl~~l~flqggk~~~~aqqyad~aln~------dryn~~--a~~nkgn------------~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 459 NLCALRFLQGGKDFADAQQYADIALNI------DRYNAA--ALTNKGN------------IAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred hhHHHHHHhcccchhHHHHHHHHHhcc------cccCHH--HhhcCCc------------eeeecCcHHHHHHHHHHHHc
Confidence 22111 11223455555554433221 112211 1222232 23467899999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 001632 815 LGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTY 894 (1041)
Q Consensus 815 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 894 (1041)
.+..-....||.=+ .+.+.|++++|+..|-++... +.-+......+.+.|....+...|++++-+.... ++.|....
T Consensus 519 ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 519 NDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred CchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 65545555565433 467789999999999888653 2235667778899999999999999999887665 77788899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-h
Q 001632 895 LSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYM-D 973 (1041)
Q Consensus 895 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~ 973 (1041)
..|...|-+.|+-..|.+.+=.--+. +|-+..+...|...|....-+++|+.+|++..- +.|+..-|..|+..|. +
T Consensus 596 skl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHh
Confidence 99999999999999999887666554 577888999999999999999999999999754 7999999999998765 6
Q ss_pred cCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCC
Q 001632 974 HGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGK 1010 (1041)
Q Consensus 974 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 1010 (1041)
.|++.+|..+|..+..+.|.|...+-.|+.+....|-
T Consensus 673 sgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 8999999999999999999999988888888776663
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.5e-14 Score=138.30 Aligned_cols=346 Identities=14% Similarity=0.119 Sum_probs=260.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 001632 215 EPDEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLV 294 (1041)
Q Consensus 215 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 294 (1041)
+.+..+|..||.++|+--..+.|.++|++-.+...+.+..+||.+|.+-.-.. ..+++.+|....+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHH
Confidence 44678999999999999999999999999999888999999999998755332 38899999999999999999999
Q ss_pred HHHHHcCCCHHH----HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHH-HHHHHHHHHh----CCCCC----CHHHH
Q 001632 295 ISSFVKGSLLEE----ALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDE-ALSLYKDMRS----RGLIP----SNYTC 361 (1041)
Q Consensus 295 i~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~~~~p----~~~~~ 361 (1041)
+++.++.|+++. |.+++.+|++.|+.|...+|..+|..+++-++..+ |..++.++.. +..+| |..-|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998875 56778889999999999999999999998887644 4444444432 22333 45667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 001632 362 ASLLSLYYKNENYSKALSLFSEMEKFK----VAADE---VIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAM 434 (1041)
Q Consensus 362 ~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 434 (1041)
..-+..|.+..|.+.|.++........ +.|+. .-|..+....|+...++.....|+.|+-.-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 788889999999999999887765421 22332 34666778888889999999999999987777888888999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-C--------HhH-----HHHHHHHHHHc------CC
Q 001632 435 AQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKE-D--------LGS-----AEGTFQTLAKT------GL 494 (1041)
Q Consensus 435 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~--------~~~-----a~~~~~~~~~~------~~ 494 (1041)
+++.--.+.++-.-+++..++.-|...+.....-++..+++.. . +.. |..+++..... ..
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~ 519 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD 519 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc
Confidence 9999889999999999988888775555554444555555443 1 100 11111111111 11
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 001632 495 PDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQV-D---FDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSL 564 (1041)
Q Consensus 495 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~ 564 (1041)
......++.+-.+.+.|..++|++++..+.+.+. . |......-+++...+.+....|..+++-|...+..
T Consensus 520 ~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 520 WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 3556678888888999999999999999965542 2 33333445667777888899999999988776543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.3e-14 Score=141.37 Aligned_cols=137 Identities=13% Similarity=0.169 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHhhCCCCCC----HHHH
Q 001632 217 DEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFN-FMLSSLHKKSYHRKVIDLWRQMMDKGVAPT----DFTY 291 (1041)
Q Consensus 217 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~ 291 (1041)
+-.....|.+-|..+....+|+..|+-+.+....|+..... .+.+.+.+...+.+|++.|+-.++.-...+ ....
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 33445566667777788889999998888777777665443 344667788889999999987776421111 3456
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 001632 292 TLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLI 355 (1041)
Q Consensus 292 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 355 (1041)
+.+.-.+.+.|.++.|+..|+...+. .|+..+-..|+-++..-|+-++..+.|.+|..-...
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~ 341 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGE 341 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCC
Confidence 77777788999999999999998877 688887667777777788999999999998765433
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.1e-11 Score=128.08 Aligned_cols=98 Identities=13% Similarity=0.181 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHh-ccCChHHHHHHHHH-HH
Q 001632 929 VNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLK-GYMDHGYIEEGINLFEEVRE-SSESDKFIMSAAVH-LY 1005 (1041)
Q Consensus 929 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~-~~ 1005 (1041)
....++.+..+|+|++|++...+ ++.+|-..-|-++-. .+.+.|+...|+.++++--. ..|.|..+|-.+.. .+
T Consensus 1295 viaaidl~ien~qwdk~idtak~---qnykpil~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~i~ed~l 1371 (1636)
T KOG3616|consen 1295 VIAAIDLMIENDQWDKAIDTAKK---QNYKPILDKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKLIFEDML 1371 (1636)
T ss_pred HHHHHHHHHhcccHHHHHHHHHh---cccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHHHHHHHh
Confidence 44567888999999999876543 456665555555443 45678999999999988432 35556666665543 44
Q ss_pred HhcC-ChhHHHHHHHHhhccCccch
Q 001632 1006 RYAG-KEHEANDILDSMNSVRIPFM 1029 (1041)
Q Consensus 1006 ~~~g-~~~eA~~~~~~~~~~~~~~~ 1029 (1041)
.+-| +..||-.-+..+++.-.-..
T Consensus 1372 akpgt~~~eay~e~a~lrdv~~dl~ 1396 (1636)
T KOG3616|consen 1372 AKPGTNCAEAYHEIADLRDVHFDLC 1396 (1636)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHH
Confidence 5544 67777666666655444333
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-09 Score=120.47 Aligned_cols=228 Identities=12% Similarity=0.142 Sum_probs=130.1
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 001632 176 QLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAV 255 (1041)
Q Consensus 176 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 255 (1041)
+.|+.|+. -.+++.+.+ -.++.+.++...|.... +...-++.+.+.+...+....+..++-...... .|+...
T Consensus 506 KvGyTPdy---mflLq~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~-~Pd~g~ 578 (1666)
T KOG0985|consen 506 KVGYTPDY---MFLLQQLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLIQQCTSFLLDALKLN-SPDEGH 578 (1666)
T ss_pred HcCCCccH---HHHHHHHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCC-Chhhhh
Confidence 33677774 345565555 56778877777776532 233345666666666666666666666655443 333332
Q ss_pred HHH-HHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhH----HHHH
Q 001632 256 FNF-MLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTY----SQLI 330 (1041)
Q Consensus 256 ~~~-li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~li 330 (1041)
..+ ++..- .. .|-++.+..+.++. -+.+-+..+.+.|.++|-+..|++.+..+.+. .-..+.- --.+
T Consensus 579 LQTrLLE~N-L~----~aPqVADAILgN~m-FtHyDra~IAqLCEKAGL~qraLehytDl~DI--KR~vVhth~L~pEwL 650 (1666)
T KOG0985|consen 579 LQTRLLEMN-LV----HAPQVADAILGNDM-FTHYDRAEIAQLCEKAGLLQRALEHYTDLYDI--KRVVVHTHLLNPEWL 650 (1666)
T ss_pred HHHHHHHHH-hc----cchHHHHHHHhccc-cccccHHHHHHHHHhcchHHHHHHhcccHHHH--HHHHHHhccCCHHHH
Confidence 221 11111 11 12222233333322 12223677888888899999998888776543 1111110 1123
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----------CCCCCHHHHHHH
Q 001632 331 SLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKF-----------KVAADEVIYGLL 399 (1041)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l 399 (1041)
-.|...-.++++.+.++.|...++.-+..+...+..-|...=-.+...++|+....- ++.-|..+.-.-
T Consensus 651 v~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KY 730 (1666)
T KOG0985|consen 651 VNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKY 730 (1666)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHH
Confidence 455566678888888888888777777666666665555544445555555554321 134455566667
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 001632 400 IRIYGKLGLYEDAQKTFAE 418 (1041)
Q Consensus 400 i~~~~~~g~~~~A~~~~~~ 418 (1041)
|.+-|+.|++.+.+++.++
T Consensus 731 IqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 731 IQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHHhhccHHHHHHHHhc
Confidence 8888888888887777543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-11 Score=125.25 Aligned_cols=220 Identities=16% Similarity=0.142 Sum_probs=174.3
Q ss_pred HhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHH
Q 001632 796 YGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEV 875 (1041)
Q Consensus 796 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 875 (1041)
+.-.|+...|.+-|+.+++....++ ..|--+...|+...+.++-.+.|++..+.+.. |+.+|..=...+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 3456788888888888888764333 33666777899999999999999999886432 556777777778888899999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001632 876 EKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAA 955 (1041)
Q Consensus 876 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 955 (1041)
+.=|++.+.. -+-+.+.|..+.-+..+.++++++...|++.+++ +|..+.+|+..+.++..++++++|.+.|+..++
T Consensus 414 ~aDF~Kai~L-~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~- 490 (606)
T KOG0547|consen 414 IADFQKAISL-DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE- 490 (606)
T ss_pred HHHHHHHhhc-ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence 9999999874 2445677888888888999999999999999987 566677999999999999999999999999887
Q ss_pred CCCCC-------HH--HHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 001632 956 GIIPD-------LA--CYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMN 1022 (1041)
Q Consensus 956 ~~~p~-------~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 1022 (1041)
+.|+ .. +...++-. .=.+++..|++++.++.+..|..-.++..|+.+-..+|+.++|.++|++..
T Consensus 491 -LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 491 -LEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred -hccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444 11 11111111 124899999999999999999888999999999999999999999998754
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-15 Score=157.71 Aligned_cols=219 Identities=18% Similarity=0.216 Sum_probs=118.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHH
Q 001632 799 GRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKL 878 (1041)
Q Consensus 799 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 878 (1041)
.++++.|.+.++++...+ +-+...+..++.. ...+++++|.+++++..++ .++...+..++..+.+.++++++..+
T Consensus 57 ~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~ 132 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEEL 132 (280)
T ss_dssp -----------------------------------------------------------------H-HHHTT-HHHHHHH
T ss_pred cccccccccccccccccc-ccccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHH
Confidence 345555666666665544 2355567777776 6889999999999887765 35666778888899999999999999
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001632 879 IQAMQRDG-FSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGI 957 (1041)
Q Consensus 879 ~~~m~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 957 (1041)
++++.... .+.+...|..+...+.+.|+.++|++.+++.++.. |.|....+.++..+...|+.+++.++++...+. .
T Consensus 133 l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-~ 210 (280)
T PF13429_consen 133 LEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKA-A 210 (280)
T ss_dssp HHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--
T ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-C
Confidence 99987642 35677788889999999999999999999999964 445778889999999999999999999998875 3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 001632 958 IPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 958 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 1023 (1041)
+.|+..+..+..+|...|+.++|+.+++++....|.|+.++..+++++...|+.++|.++.++...
T Consensus 211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 567778889999999999999999999999999999999999999999999999999999988643
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-08 Score=112.86 Aligned_cols=784 Identities=13% Similarity=0.123 Sum_probs=410.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 001632 185 AYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLH 264 (1041)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 264 (1041)
.|-.-...+...|++++|-++-..-++ |+-.+..|.+.+=..=+..|...=.+.+|..+...| +.|..----+++--.
T Consensus 362 Lfv~rFneLfaqG~Y~eAAkvAAsSPr-gILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETLEL~RpVL 439 (1666)
T KOG0985|consen 362 LFVRRFNELFAQGEYEEAAKVAASSPR-GILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETLELCRPVL 439 (1666)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHhCch-hhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHHHHHHHHH
Confidence 344445566678999999888776654 566777777777666667778777888888888888 555544444555556
Q ss_pred hcCChhHHHHHHHHHh-----hCC--CCCC-----HHHH------HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhH
Q 001632 265 KKSYHRKVIDLWRQMM-----DKG--VAPT-----DFTY------TLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTY 326 (1041)
Q Consensus 265 ~~g~~~~a~~~~~~m~-----~~~--~~~~-----~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 326 (1041)
.+|+.+...+|+.+=+ +.| +.|- ..+| +.++..|+..|+++.+.-.. .+.|..|| |
T Consensus 440 ~Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~---kKvGyTPd---y 513 (1666)
T KOG0985|consen 440 QQGRKQLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYA---KKVGYTPD---Y 513 (1666)
T ss_pred hhhHHHHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHH---HHcCCCcc---H
Confidence 6777777777765521 122 1121 1222 33455555556655544332 34577777 4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHh
Q 001632 327 SQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIY-GLLIRIYGK 405 (1041)
Q Consensus 327 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~ 405 (1041)
-.+++.+.+ -..|.+.++...|.+... ...-++.+...+...+....+..++-.+.+.. .|+.... ..++..-.
T Consensus 514 mflLq~l~r-~sPD~~~qFa~~l~Q~~~--~~~die~I~DlFme~N~iQq~TSFLLdaLK~~-~Pd~g~LQTrLLE~NL- 588 (1666)
T KOG0985|consen 514 MFLLQQLKR-SSPDQALQFAMMLVQDEE--PLADIEQIVDLFMELNLIQQCTSFLLDALKLN-SPDEGHLQTRLLEMNL- 588 (1666)
T ss_pred HHHHHHHHc-cChhHHHHHHHHhhccCC--CcccHHHHHHHHHHHHhhhhhHHHHHHHhcCC-ChhhhhHHHHHHHHHh-
Confidence 445666555 678888888888776432 23345666666666666677777666665543 3343322 22222211
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C-CCCHHHHHHHHHHHHhcCCHhHH
Q 001632 406 LGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRN--M-WLSRFAYIVMLQCYVMKEDLGSA 482 (1041)
Q Consensus 406 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~~ll~~~~~~~~~~~a 482 (1041)
.+-.+-| +.+.-.+.... .-+-.+.+.|-+.|-+..|++.+.++.+-. + ..+...- --+-.|...-..+.+
T Consensus 589 ~~aPqVA----DAILgN~mFtH-yDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~p-EwLv~yFg~lsve~s 662 (1666)
T KOG0985|consen 589 VHAPQVA----DAILGNDMFTH-YDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNP-EWLVNYFGSLSVEDS 662 (1666)
T ss_pred ccchHHH----HHHHhcccccc-ccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCH-HHHHHHHHhcCHHHH
Confidence 1112222 22222222111 114556666777777777776666553310 0 0000000 011233344456677
Q ss_pred HHHHHHHHHcCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----------CCCCCHHHHHHHHHHHHhcCChhh
Q 001632 483 EGTFQTLAKTGL-PDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKD-----------QVDFDEELYRSVMKIYCKEGMVTD 550 (1041)
Q Consensus 483 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~~~~~ll~~~~~~g~~~~ 550 (1041)
.++++.|...+. .+..+.-.+..-|..+=..+...++|+..... ++.-|+...-..|.+.|+.|++.+
T Consensus 663 ~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikE 742 (1666)
T KOG0985|consen 663 LECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKE 742 (1666)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHH
Confidence 777777777666 56665555555555544445555555544321 344566666778889999999888
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccc---hhhh-hhhhhhhHHHHhhhhccCcccHHHHHHHHHHHh
Q 001632 551 AEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGD---KFVA-SNQLDLMALGLMLSLYLTDDNFSKREKILKLLL 626 (1041)
Q Consensus 551 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 626 (1041)
..++.++ .++--...+-+.+-.+-.....+...+-. +.+. ....--......+..|...-++.+.-.+.-.++
T Consensus 743 vERicre---sn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LL 819 (1666)
T KOG0985|consen 743 VERICRE---SNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALL 819 (1666)
T ss_pred HHHHHhc---cccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhh
Confidence 7776553 11111111111111110000000000000 0000 000001111222333444434444444444444
Q ss_pred hcCCchhHHHHHHHHHHHcCCHHHHHH-----------------HHHcCCCCCHHHHHHHHHHHhccCCHHHH-H---HH
Q 001632 627 HTAGGSSVVSQLICKFIRDGMRLTFKF-----------------LMKLGYILDDEVTASLIGSYGKHQKLKEA-Q---DV 685 (1041)
Q Consensus 627 ~~~~~~~~~~~li~~~~~~g~~~~a~~-----------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~---~~ 685 (1041)
+..-+......+|......-..++-.. .+..| ..|+.+++++.+.|...++-.+- . ..
T Consensus 820 D~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~y 898 (1666)
T KOG0985|consen 820 DVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPY 898 (1666)
T ss_pred cCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCc
Confidence 443344444444433322222222111 22333 45788999999998765542221 0 01
Q ss_pred HHH------hhcC-----------CCCC---------hHHHHHHHHHHHhcCChhHHH-----------HHHHHHHHcCC
Q 001632 686 FKA------ATVS-----------CKPG---------KLVLRSMIDAYAKCGKAEDVY-----------LLYKEATAQGC 728 (1041)
Q Consensus 686 ~~~------~~~~-----------~~~~---------~~~~~~l~~~~~~~g~~~~A~-----------~~~~~~~~~g~ 728 (1041)
++. ..+. ..-| -..|....+-+.+..+.+--. .+.++.++-++
T Consensus 899 YDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal 978 (1666)
T KOG0985|consen 899 YDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTAL 978 (1666)
T ss_pred chhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcC
Confidence 111 0000 0001 122333444444444433222 23333333322
Q ss_pred C--CCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCC--CChhhHHHHH---------------------------HHH
Q 001632 729 A--LDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLD--LDTVAYNTCI---------------------------KAM 777 (1041)
Q Consensus 729 ~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li---------------------------~~~ 777 (1041)
. .|+...+..+.++...+-+.+-+++++++.-.+.. -+...-|.+| ...
T Consensus 979 ~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~ia 1058 (1666)
T KOG0985|consen 979 PETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIA 1058 (1666)
T ss_pred CccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHH
Confidence 1 24555667788888888888988888887654421 1111222222 223
Q ss_pred HhcCChhHHHHHHHHHH--------HHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 778 LGAGKLHFAASIYERML--------VYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQE 849 (1041)
Q Consensus 778 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 849 (1041)
..++-+++|..+|++.. ....-+++++|.+.-++.- .+.+|..+..+-.+.|.+.+|++-|-+.
T Consensus 1059 i~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika-- 1130 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA-- 1130 (1666)
T ss_pred hhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc--
Confidence 33455566666665533 2223455666665554432 3567888888888888888887766443
Q ss_pred cCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHH
Q 001632 850 EGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHV 929 (1041)
Q Consensus 850 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 929 (1041)
-|+..|.-.++...+.|.+++-++.+....+..-+|...+ .|+-+|++.++..+-++++. -|+....
T Consensus 1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi~-------gpN~A~i 1197 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFIA-------GPNVANI 1197 (1666)
T ss_pred ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHhc-------CCCchhH
Confidence 2566788888888888888888888887777655565544 46677888888766554432 3666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh--------------------
Q 001632 930 NHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRE-------------------- 989 (1041)
Q Consensus 930 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------------- 989 (1041)
..+++-|...|.++.|.-+|... ..|.-|...+...|++..|+.-..++..
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH
Confidence 66676666666666665555432 1233333333344444444433333211
Q ss_pred -----ccCChHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 001632 990 -----SSESDKFIMSAAVHLYRYAGKEHEANDILDSM 1021 (1041)
Q Consensus 990 -----~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 1021 (1041)
.....+.-+..++..|...|-++|-..+++.-
T Consensus 1269 QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1269 QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 11223445666777888888888877776653
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-08 Score=106.72 Aligned_cols=527 Identities=15% Similarity=0.117 Sum_probs=287.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 001632 400 IRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDL 479 (1041)
Q Consensus 400 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 479 (1041)
...+...|+++.|...|-+... ....+.+.....++.+|+.+++.+.++.. ..--|..+.+.|...|++
T Consensus 713 g~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~df 781 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDF 781 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhH
Confidence 3445567777777776644321 22345666778899999999998877643 334577888999999999
Q ss_pred hHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHh
Q 001632 480 GSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMG 559 (1041)
Q Consensus 480 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 559 (1041)
+.|+++|.+ ...++.-+.+|.+.|+++.|.++-.+.. |.+.....|.+-..-+-+.|++.+|.+++-.+.
T Consensus 782 e~ae~lf~e--------~~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~ 851 (1636)
T KOG3616|consen 782 EIAEELFTE--------ADLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG 851 (1636)
T ss_pred HHHHHHHHh--------cchhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc
Confidence 999999864 3457778899999999999988876653 344455667666677778888888887765432
Q ss_pred hCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHhhcCCchhHHHHHH
Q 001632 560 KNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLI 639 (1041)
Q Consensus 560 ~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li 639 (1041)
.. + ..+.+|-+.|..|..+.+.++-... .-...+..+.
T Consensus 852 ~p----~-------------------------------------~aiqmydk~~~~ddmirlv~k~h~d-~l~dt~~~f~ 889 (1636)
T KOG3616|consen 852 EP----D-------------------------------------KAIQMYDKHGLDDDMIRLVEKHHGD-HLHDTHKHFA 889 (1636)
T ss_pred Cc----h-------------------------------------HHHHHHHhhCcchHHHHHHHHhChh-hhhHHHHHHH
Confidence 21 1 1234455556666665555443211 1122455666
Q ss_pred HHHHHcCCHHHHHH-HHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhc-------------CCCCC--hHHH---
Q 001632 640 CKFIRDGMRLTFKF-LMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATV-------------SCKPG--KLVL--- 700 (1041)
Q Consensus 640 ~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------~~~~~--~~~~--- 700 (1041)
..+-..|++..|.+ .++.| -+.+-+.+|...+-+++|..+-..--. +...+ +...
T Consensus 890 ~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~ 963 (1636)
T KOG3616|consen 890 KELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKH 963 (1636)
T ss_pred HHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhh
Confidence 67777787777776 33333 344555666666666666665433110 00000 0111
Q ss_pred ---HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHH-----
Q 001632 701 ---RSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNT----- 772 (1041)
Q Consensus 701 ---~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----- 772 (1041)
..-++.-+..+.++-|.++-+-..+.. .+.. -..+..-+...|++++|.+-+-+.++.+.- ..+|..
T Consensus 964 gll~~~id~a~d~~afd~afdlari~~k~k-~~~v--hlk~a~~ledegk~edaskhyveaiklnty--nitwcqavpsr 1038 (1636)
T KOG3616|consen 964 GLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEV--HLKLAMFLEDEGKFEDASKHYVEAIKLNTY--NITWCQAVPSR 1038 (1636)
T ss_pred hhHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccc--hhHHhhhhhhccchhhhhHhhHHHhhcccc--cchhhhcccch
Confidence 112222333344444444433333221 1111 112333456778888887777766654311 011111
Q ss_pred --------------HHHHHHhcCChhHHHHHHHHHH-------------HHhccCChHHHHHHHHHHHHCCCCCCHHHHH
Q 001632 773 --------------CIKAMLGAGKLHFAASIYERML-------------VYGRGRKLDKALEMFNTARSLGLSLDEKAYM 825 (1041)
Q Consensus 773 --------------li~~~~~~g~~~~A~~~~~~~~-------------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 825 (1041)
.+..+.+.++|..|..+-+.-. .....|++.+|..++-+.. .|+.
T Consensus 1039 fd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllran----kp~i---- 1110 (1636)
T KOG3616|consen 1039 FDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRAN----KPDI---- 1110 (1636)
T ss_pred hhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeecC----CCch----
Confidence 1122333344444433332210 1112233444433332222 2332
Q ss_pred HHHHHHHhcCCHHHHHHHHHH----------------HHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 001632 826 NLVSFYGKAGKTHEASLLFSE----------------MQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSP 889 (1041)
Q Consensus 826 ~l~~~~~~~g~~~~A~~~~~~----------------m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 889 (1041)
.++.|..++.|.+|+++.+. ..++|.+ .+..+..-..-+.+.|++.+|+..+-++.+.....
T Consensus 1111 -~l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~gar-gvd~fvaqak~weq~gd~rkav~~~lkinrdst~n 1188 (1636)
T KOG3616|consen 1111 -ALNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKGAR-GVDGFVAQAKEWEQAGDWRKAVDALLKINRDSTDN 1188 (1636)
T ss_pred -HHHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhcccc-ccHHHHHHHHHHHhcccHHHHHHHHhhhccCCCCc
Confidence 45566777777777766432 1222432 45667777777888899988888776653321111
Q ss_pred C---------------------H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHH
Q 001632 890 N---------------------S--FTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEAT 946 (1041)
Q Consensus 890 ~---------------------~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 946 (1041)
| . ......+.++...|..+.|-+++-..- .....++++|+...|.+|.
T Consensus 1189 d~l~e~~~~kaadl~ikfl~~d~nme~i~aa~~al~~~~~~e~aael~l~f~---------~~keaida~~~~eewakak 1259 (1636)
T KOG3616|consen 1189 DALAEHCTEKAADLSIKFLMGDENMEVIGAAGGALDEAGCHEAAAELLLLFD---------LSKEAIDAFCEAEEWAKAK 1259 (1636)
T ss_pred HHHHHHHHHHHHhhhhhhcCCccchhhHHhcchhhhcccccHHHHHHHHHhh---------hHHHHHHHHHhHHHHHHHH
Confidence 1 1 111122222233333333333322111 1133467888888888887
Q ss_pred HHHHHH---------------HHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHH-HHHHHHh
Q 001632 947 RVYNES---------------LAAGIIPDL---ACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSA-AVHLYRY 1007 (1041)
Q Consensus 947 ~~~~~~---------------~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~ 1007 (1041)
++.+++ ++..-+.+. +-..+.+..+...|++++|+.-..+ +...|-..-|.. .+..+.+
T Consensus 1260 qvake~~p~~~~~idk~yke~lknegkl~eli~vdviaaidl~ien~qwdk~idtak~--qnykpil~kyva~yaa~li~ 1337 (1636)
T KOG3616|consen 1260 QVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVDVIAAIDLMIENDQWDKAIDTAKK--QNYKPILDKYVALYAAHLIH 1337 (1636)
T ss_pred HHHHHhCchhhHHHHHHHHHHHhccCccccccchhHHHHHHHHHhcccHHHHHHHHHh--cccHHHHHHHHHHHHHHHHh
Confidence 776654 221111111 1123446778899999999877654 223332223332 2445778
Q ss_pred cCChhHHHHHHHHh
Q 001632 1008 AGKEHEANDILDSM 1021 (1041)
Q Consensus 1008 ~g~~~eA~~~~~~~ 1021 (1041)
.|+..+|+.++.+-
T Consensus 1338 ~~d~aq~lal~~q~ 1351 (1636)
T KOG3616|consen 1338 EGDLAQALALLEQH 1351 (1636)
T ss_pred cCcHHHHHHHHHHh
Confidence 99999999988764
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.4e-09 Score=107.89 Aligned_cols=163 Identities=11% Similarity=0.091 Sum_probs=82.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHH
Q 001632 180 RPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTA-VFNF 258 (1041)
Q Consensus 180 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~ 258 (1041)
+.+...|-....-=..++++..|+.+|+..+..+ ..+...|..-+..=.++..+..|..+++..... .|.+. .|--
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyK 146 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYK 146 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHH
Confidence 3455556555555556677788888888887654 345566666666666667777777777665543 22221 1111
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 001632 259 MLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGK 338 (1041)
Q Consensus 259 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 338 (1041)
.+..=-..|++..|.++|+.-.+ ..|+...|.+.|+.=.+...++.|..++++..-. .|++.+|--....--++|.
T Consensus 147 Y~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 147 YIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCc
Confidence 12222223444444444444433 2344444444444444444444444444444332 3444444444444444444
Q ss_pred hHHHHHHHHHH
Q 001632 339 SDEALSLYKDM 349 (1041)
Q Consensus 339 ~~~A~~~~~~m 349 (1041)
...|..+|+..
T Consensus 223 ~~~aR~VyerA 233 (677)
T KOG1915|consen 223 VALARSVYERA 233 (677)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.7e-09 Score=106.27 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=26.8
Q ss_pred cCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 001632 691 VSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQ 726 (1041)
Q Consensus 691 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 726 (1041)
...|.|-.+|--.++.-...|+.+...++|++.+.+
T Consensus 316 ~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan 351 (677)
T KOG1915|consen 316 SKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN 351 (677)
T ss_pred HhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Confidence 344667777777777777778888888888887765
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.3e-13 Score=141.37 Aligned_cols=203 Identities=13% Similarity=0.135 Sum_probs=173.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHH
Q 001632 818 SLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKP-GLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNS-FTYL 895 (1041)
Q Consensus 818 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~ 895 (1041)
+..+.+|.++.++|.-+++.+.|++.|++.++. .| ...+|+.+..-+.....+|.|...|+..+. +.|+. ..|.
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwY 493 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWY 493 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHH
Confidence 567889999999999999999999999999986 55 567888888888888999999999998875 33433 3466
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001632 896 SLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHG 975 (1041)
Q Consensus 896 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 975 (1041)
-|+..|.+.++++.|+-.|+++++-+ |-+.+...+++..+.+.|+.|+|+++++++.... +-|+.+---.+..+...+
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~ 571 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLG 571 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhc
Confidence 67888999999999999999999954 4456677888999999999999999999998752 336666666677888999
Q ss_pred ChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCc
Q 001632 976 YIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRI 1026 (1041)
Q Consensus 976 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 1026 (1041)
++++|+..++++.+..|.++.++..++.+|.+.|+.+.|+.-+.-+.+..-
T Consensus 572 ~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 572 RYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred chHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 999999999999999999999999999999999999999988887766443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-10 Score=118.02 Aligned_cols=290 Identities=12% Similarity=0.111 Sum_probs=194.5
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCC--CCChhhHHHHHHHHHhcCCh
Q 001632 706 AYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNL--DLDTVAYNTCIKAMLGAGKL 783 (1041)
Q Consensus 706 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~ 783 (1041)
++-...+.++++.-.....+.|+......-+....+.-...++|+|+.+|+++.+..+ --|.-+|..++-.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv------- 308 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV------- 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH-------
Confidence 3444445555555555555555443333333333344455566666666666665543 1233344333322
Q ss_pred hHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-cccHHHH
Q 001632 784 HFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPG-LISYNII 862 (1041)
Q Consensus 784 ~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 862 (1041)
+..+-.-+ -+-..+.+-+ +--+.|...+.+.|+-.++.++|...|++.++. .|. ...|+.|
T Consensus 309 --------------~~~~skLs-~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLm 370 (559)
T KOG1155|consen 309 --------------KNDKSKLS-YLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLM 370 (559)
T ss_pred --------------HhhhHHHH-HHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHh
Confidence 11111100 0001111110 123346667788888888999999999999886 344 3667788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCH
Q 001632 863 INVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLM 942 (1041)
Q Consensus 863 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 942 (1041)
..-|...++...|++-++..++- .+-|-..|-.|+++|.-.+...=|+-.|++..+.. |-|...|..|+.+|.+.++.
T Consensus 371 GHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~ 448 (559)
T KOG1155|consen 371 GHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRL 448 (559)
T ss_pred hHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccH
Confidence 88899999999999999998885 46678889999999999999999999999999863 55677899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-------cCChHHHHHHHHHHHHhcCChhHHH
Q 001632 943 AEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRES-------SESDKFIMSAAVHLYRYAGKEHEAN 1015 (1041)
Q Consensus 943 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~eA~ 1015 (1041)
++|++-|......| ..+...+..|...|-+.++.++|..+|++..+. .+....+..-|+..+.+.+++++|.
T Consensus 449 ~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 449 EEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred HHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHH
Confidence 99999999988764 335677888889999999999999999986652 2223445555777788888888888
Q ss_pred HHHHHhhc
Q 001632 1016 DILDSMNS 1023 (1041)
Q Consensus 1016 ~~~~~~~~ 1023 (1041)
........
T Consensus 528 ~Ya~~~~~ 535 (559)
T KOG1155|consen 528 YYATLVLK 535 (559)
T ss_pred HHHHHHhc
Confidence 76665544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.1e-08 Score=102.34 Aligned_cols=575 Identities=14% Similarity=0.124 Sum_probs=300.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 001632 254 AVFNFMLSSLHKKSYHRKVIDLWRQMMDK-GVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISL 332 (1041)
Q Consensus 254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 332 (1041)
..|-..+..+.++|++......|+..+.. -+.-....|...+......|-.+.+.+++++.++. .| ..-..-|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHHHHH
Confidence 35666677777888888888888776543 23334457888888888888888999999888865 33 336667788
Q ss_pred HHhcCChHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCC--HHHHHHHHH
Q 001632 333 SIKHGKSDEALSLYKDMRSRG------LIPSNYTCASLLSLYYKNENYS---KALSLFSEMEKFKVAAD--EVIYGLLIR 401 (1041)
Q Consensus 333 ~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~~~~~---~a~~~~~~~~~~~~~~~--~~~~~~li~ 401 (1041)
++..+++++|.+.+......+ .+-+...|..+-+...++.+.- ....++..+... -+| ...|..|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 888899999988888875432 1223344444444444433321 123333333332 122 235666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhH
Q 001632 402 IYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGS 481 (1041)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 481 (1041)
.|.+.|+++.|..+|++....-. ...-|..+.+.|....+..-+..+= ...+.+..+. ..-+++-
T Consensus 257 YYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~~dl~~ 321 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DDVDLEL 321 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hhhhHHH
Confidence 67777777777777666554311 2223333444443322111111100 0000000000 0001111
Q ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 001632 482 AEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKN 561 (1041)
Q Consensus 482 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 561 (1041)
....|+.+....+ .+++ ...-..-+-++..|..-+ -+..|+..+-...+.+....
T Consensus 322 ~~a~~e~lm~rr~-------~~lN----------------sVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~ 376 (835)
T KOG2047|consen 322 HMARFESLMNRRP-------LLLN----------------SVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT 376 (835)
T ss_pred HHHHHHHHHhccc-------hHHH----------------HHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc
Confidence 2222222222111 0000 000000112233333222 22334455555555554443
Q ss_pred CCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHhhcCCchhHHHHHHHH
Q 001632 562 GSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICK 641 (1041)
Q Consensus 562 ~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~ 641 (1041)
+.|..
T Consensus 377 -vdP~k-------------------------------------------------------------------------- 381 (835)
T KOG2047|consen 377 -VDPKK-------------------------------------------------------------------------- 381 (835)
T ss_pred -cCccc--------------------------------------------------------------------------
Confidence 11110
Q ss_pred HHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCC----hHHHHHHHHHHHhcCChhHHH
Q 001632 642 FIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPG----KLVLRSMIDAYAKCGKAEDVY 717 (1041)
Q Consensus 642 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~ 717 (1041)
....-...+..+.+.|-..|+++.|+.+|++.....-+. ..+|.....+-.++.+++.|+
T Consensus 382 ----------------a~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al 445 (835)
T KOG2047|consen 382 ----------------AVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAAL 445 (835)
T ss_pred ----------------CCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 000011234555666667777777777777744221111 245666666666677777777
Q ss_pred HHHHHHHHcCCC-----------------CCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhc
Q 001632 718 LLYKEATAQGCA-----------------LDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGA 780 (1041)
Q Consensus 718 ~~~~~~~~~g~~-----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 780 (1041)
.+.++....--. .....|...++..-..|-++....+++.+++..+.......|-.+
T Consensus 446 ~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm------ 519 (835)
T KOG2047|consen 446 KLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM------ 519 (835)
T ss_pred HHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH------
Confidence 777766542100 011233333444344444455555555544443322111111110
Q ss_pred CChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCc
Q 001632 781 GKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEK-AYMNLVSFYGKA---GKTHEASLLFSEMQEEGIKPGL 856 (1041)
Q Consensus 781 g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~---g~~~~A~~~~~~m~~~g~~p~~ 856 (1041)
-.....-++++.++|++-+..--.|+.. .|+..+.-+.+. -+++.|..+|++.++ |..|..
T Consensus 520 --------------fLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~ 584 (835)
T KOG2047|consen 520 --------------FLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEH 584 (835)
T ss_pred --------------HHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHH
Confidence 1123445667777776666554445554 788877777653 468999999999998 665544
Q ss_pred cc--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhH---H
Q 001632 857 IS--YNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNS--FTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTH---V 929 (1041)
Q Consensus 857 ~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~ 929 (1041)
.- |......-.+.|....|+.++++.... +++.. ..|+..|.--...=-+.....+|++.++. -|+... .
T Consensus 585 aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mc 661 (835)
T KOG2047|consen 585 AKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMC 661 (835)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHH
Confidence 22 222233334678889999999997664 44432 34666664333332334557788888874 354433 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 001632 930 NHLLSAFSKAGLMAEATRVYNESLAAGIIP--DLACYRTMLKGYMDHGYIEEGINLFEEVRESS 991 (1041)
Q Consensus 930 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 991 (1041)
--..++=++.|.++.|..+|.-.-+- ++| +...|.+.=.--.++|+-+--.+++ +++...
T Consensus 662 lrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGnedT~keML-RikRsv 723 (835)
T KOG2047|consen 662 LRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGNEDTYKEML-RIKRSV 723 (835)
T ss_pred HHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCCHHHHHHHH-HHHHHH
Confidence 33455667889999999999887664 455 5667777766667899833333333 344433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-11 Score=133.70 Aligned_cols=218 Identities=11% Similarity=0.020 Sum_probs=155.0
Q ss_pred hccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcc-------cHHHHHHHHHHc
Q 001632 797 GRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLI-------SYNIIINVYAAA 869 (1041)
Q Consensus 797 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------~~~~l~~~~~~~ 869 (1041)
...|++++|.+.++.+.+.. +.+..++..+...|.+.|++++|.+++..+.+.+..++.. .|..++......
T Consensus 164 l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 164 LARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666666666666654 5567778888888888889999988888888875432221 222233333344
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 001632 870 GLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVY 949 (1041)
Q Consensus 870 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 949 (1041)
.+.+...++++.+.+. .+.+......+..++...|+.++|.+++++..+. +|+.... ++.+....|+.+++++.+
T Consensus 243 ~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~ 317 (398)
T PRK10747 243 QGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVL 317 (398)
T ss_pred cCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHH
Confidence 4556666666666443 4567777888888889999999999999888873 4555322 233334558889999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 001632 950 NESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMN 1022 (1041)
Q Consensus 950 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 1022 (1041)
+++++. .+-|+..+.++.+.|.+.|++++|...|+++.+..| +...+..++.++.+.|+.++|.+++++-.
T Consensus 318 e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 318 RQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP-DAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 998875 444666778888889999999999999999887544 44556678999999999999988888653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-11 Score=134.20 Aligned_cols=287 Identities=11% Similarity=0.046 Sum_probs=185.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 001632 710 CGKAEDVYLLYKEATAQGCALDAV-AISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAAS 788 (1041)
Q Consensus 710 ~g~~~~A~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 788 (1041)
.|+++.|.+.+.+..+.. |+.. .+-....+....|+++.|..++.+..+..+.+..........
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~------------- 161 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTR------------- 161 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHH-------------
Confidence 455555555555544432 2222 222223344455555555555555544433322212111222
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHH----HHHH
Q 001632 789 IYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYN----IIIN 864 (1041)
Q Consensus 789 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~----~l~~ 864 (1041)
++...|+++.|.+.++.+.+.. |.+..++..+...|.+.|++++|.+++..+.+.+.. +...+. ....
T Consensus 162 ------l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~ 233 (409)
T TIGR00540 162 ------ILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEI 233 (409)
T ss_pred ------HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 2334556666666666666664 556778888999999999999999999999987643 222221 1112
Q ss_pred HHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhH---HHHHHHHHHh
Q 001632 865 VYAAAGLYNEVEKLIQAMQRDG---FSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTH---VNHLLSAFSK 938 (1041)
Q Consensus 865 ~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~ 938 (1041)
++...+..+++.+.+..+.+.. .+.+...+..++..+...|+.++|.+++++..+.. |+... ..........
T Consensus 234 ~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~ 311 (409)
T TIGR00540 234 GLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLK 311 (409)
T ss_pred HHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcC
Confidence 2233334444445555555531 12377888889999999999999999999999863 44432 1222223344
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHH--HHhccCChHHHHHHHHHHHHhcCChhHH
Q 001632 939 AGLMAEATRVYNESLAAGIIPDL--ACYRTMLKGYMDHGYIEEGINLFEE--VRESSESDKFIMSAAVHLYRYAGKEHEA 1014 (1041)
Q Consensus 939 ~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~eA 1014 (1041)
.++.+++++.+++.++. .+-|+ ....++.+.+.+.|++++|.++|++ ..+. .|++.++.+++.++.+.|+.++|
T Consensus 312 ~~~~~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-~p~~~~~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 312 PEDNEKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE-QLDANDLAMAADAFDQAGDKAEA 389 (409)
T ss_pred CCChHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 57889999999998874 33356 6778999999999999999999995 4443 55666777999999999999999
Q ss_pred HHHHHHhhc
Q 001632 1015 NDILDSMNS 1023 (1041)
Q Consensus 1015 ~~~~~~~~~ 1023 (1041)
.+++++-..
T Consensus 390 ~~~~~~~l~ 398 (409)
T TIGR00540 390 AAMRQDSLG 398 (409)
T ss_pred HHHHHHHHH
Confidence 999998544
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-08 Score=108.10 Aligned_cols=310 Identities=13% Similarity=0.097 Sum_probs=183.7
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhc
Q 001632 680 KEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSF 759 (1041)
Q Consensus 680 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 759 (1041)
.++.+.+++.....+.|......+.--|+..++.+.|.+..++...-+..-+...|..+.-.+...+++.+|+.+++...
T Consensus 461 ~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 45566666655444555555555566677788888888888888887666677788888778888888888888887766
Q ss_pred cCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001632 760 QDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHE 839 (1041)
Q Consensus 760 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 839 (1041)
..-...-.... .-+.--...++.+.|......++ .+|+.... ....++-..
T Consensus 541 ~E~~~N~~l~~-~~~~i~~~~~~~e~~l~t~~~~L------------~~we~~~~----------------~q~~~~~g~ 591 (799)
T KOG4162|consen 541 EEFGDNHVLMD-GKIHIELTFNDREEALDTCIHKL------------ALWEAEYG----------------VQQTLDEGK 591 (799)
T ss_pred HHhhhhhhhch-hhhhhhhhcccHHHHHHHHHHHH------------HHHHhhhh----------------Hhhhhhhhh
Confidence 54322110000 00111112344444444444433 11110000 000011111
Q ss_pred HHHHHHHHHHc-CCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCC------HHHHHHHHHHHHhcCCHHHH
Q 001632 840 ASLLFSEMQEE-GIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGF--SPN------SFTYLSLVQAYTEAAKYSEA 910 (1041)
Q Consensus 840 A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~--~~~------~~~~~~l~~~~~~~g~~~~A 910 (1041)
.++....+.-. +-.-+.+.-..-+..... -+...+.--.. +..... .|+ ...|......+.+.+..++|
T Consensus 592 ~~~lk~~l~la~~q~~~a~s~sr~ls~l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a 669 (799)
T KOG4162|consen 592 LLRLKAGLHLALSQPTDAISTSRYLSSLVA-SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEA 669 (799)
T ss_pred hhhhhcccccCcccccccchhhHHHHHHHH-hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHH
Confidence 12222211110 000011111111111111 00000000000 111111 112 23344556677888888999
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHH--HHHHH
Q 001632 911 EETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD-LACYRTMLKGYMDHGYIEEGIN--LFEEV 987 (1041)
Q Consensus 911 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~ 987 (1041)
..-+.+..... +-....|...+..+...|++++|.+.|...+. +.|+ +.+..++...+.+.|+-.-|.. ++..+
T Consensus 670 ~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~da 746 (799)
T KOG4162|consen 670 RSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDA 746 (799)
T ss_pred HHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 88888877742 45556788888899999999999999999887 5664 6688889999999998877777 99999
Q ss_pred HhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 001632 988 RESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 988 ~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 1023 (1041)
.+..|.++.+++.++.++.+.|+.++|.+.++...+
T Consensus 747 lr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 747 LRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 999999999999999999999999999999987654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.9e-08 Score=102.93 Aligned_cols=540 Identities=13% Similarity=0.111 Sum_probs=298.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001632 466 YIVMLQCYVMKEDLGSAEGTFQTLAKTGL--PDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYC 543 (1041)
Q Consensus 466 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 543 (1041)
+..-++....++++..-...|+..+..-+ .....|...+......+-.+.+..+|++..+. ++..-+-.+..++
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~ 180 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLA 180 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHH
Confidence 44444455555566666666655554443 34455555555555666666666666665543 3334555556666
Q ss_pred hcCChhhHHHHHHHHhhCC------CCCCHHHHHHHHHHHhccCCCcc--cccchhhh----hhhhhhhHHHHhhhhccC
Q 001632 544 KEGMVTDAEQFVEEMGKNG------SLKDSKFIQTFCKILHGGCTENA--EFGDKFVA----SNQLDLMALGLMLSLYLT 611 (1041)
Q Consensus 544 ~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~l~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~ 611 (1041)
+.+++++|.+.+...+... .+.+...+..+...+.+..+... +++..+.. ..+.--..|+.++..|..
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIR 260 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHH
Confidence 6666666666666555432 12222333333333332221110 11222222 223334678889999999
Q ss_pred cccHHHHHHHHHHHhhcCCchhHHHHHHHHHHHcCCHHHHHHHH----HcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 001632 612 DDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDGMRLTFKFLM----KLGYILDDEVTASLIGSYGKHQKLKEAQDVFK 687 (1041)
Q Consensus 612 ~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 687 (1041)
.|.+++|..+++..+..-.+..-+.++.+.|.+-.....+..|. +.+-..+...+..-+..+...- +.--.+.+
T Consensus 261 ~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm--~rr~~~lN 338 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLM--NRRPLLLN 338 (835)
T ss_pred hhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHH--hccchHHH
Confidence 99999999999999998888888888888887766555555443 1111111111111111110000 00000111
Q ss_pred H-hhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHccCCHHHHHHHHHHhcc
Q 001632 688 A-ATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALD------AVAISILVNTLTNHGKHEQAEIIIHNSFQ 760 (1041)
Q Consensus 688 ~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 760 (1041)
. +....+.++..|..-+..+ .|+..+-...|.+++.. +.|. ...|..+...|...|+.+.|..+|++..+
T Consensus 339 sVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 1 2234466677776655543 56777888888888765 3332 23677788888899999999999998887
Q ss_pred CCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHhcC
Q 001632 761 DNLDLD---TVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTAR--SLGLSLDEKAYMNLVSFYGKAG 835 (1041)
Q Consensus 761 ~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g 835 (1041)
-..+-- ..+|......-.+..+++.|.++.++....-+.. . ++.|+... +..+..+..+|..+++.....|
T Consensus 416 V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~--~--~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 416 VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNP--E--LEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCch--h--hhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 765433 4567777777777788888888877765111110 0 11121110 0001124556777777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHh---cCCHHHHH
Q 001632 836 KTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSF-TYLSLVQAYTE---AAKYSEAE 911 (1041)
Q Consensus 836 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l~~~~~~---~g~~~~A~ 911 (1041)
-++....+++++++..+- .+.........+..+..++++.+.|++-+..=-.|+.+ .|++.+..+.+ ..+.+.|.
T Consensus 492 tfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred cHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 788888888888775442 22222223334455666777777777655531123332 35555544432 23678888
Q ss_pred HHHHHHHHCCCCCChhHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHH-HhcCChHHHHHHHHH
Q 001632 912 ETINSMQKQGIPPSCTHVNHLL--SAFSKAGLMAEATRVYNESLAAGIIPD--LACYRTMLKGY-MDHGYIEEGINLFEE 986 (1041)
Q Consensus 912 ~~~~~~~~~~~~p~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~-~~~g~~~~A~~~~~~ 986 (1041)
.+|++.++ |+||...-+-.|+ ..=-+.|....|+.+|+++-.. .++. ...|+..+.-- .-.| +..-..+|++
T Consensus 571 dLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yG-v~~TR~iYek 647 (835)
T KOG2047|consen 571 DLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYG-VPRTREIYEK 647 (835)
T ss_pred HHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhC-CcccHHHHHH
Confidence 88888887 5666544332222 2223457778888888886542 4332 22344433211 1112 2334566777
Q ss_pred HHhccCChH--HHHHHHHHHHHhcCChhHHHHHHHHhh
Q 001632 987 VRESSESDK--FIMSAAVHLYRYAGKEHEANDILDSMN 1022 (1041)
Q Consensus 987 ~~~~~~~~~--~~~~~l~~~~~~~g~~~eA~~~~~~~~ 1022 (1041)
+++.+|.+- ......+++=++.|..+.|..++.--.
T Consensus 648 aIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~s 685 (835)
T KOG2047|consen 648 AIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGS 685 (835)
T ss_pred HHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 766655543 233445566667777777777765543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=145.04 Aligned_cols=187 Identities=16% Similarity=0.155 Sum_probs=112.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCcccHHHHHHHHHHcCCHHHHHH
Q 001632 799 GRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEG-IKPGLISYNIIINVYAAAGLYNEVEK 877 (1041)
Q Consensus 799 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~ 877 (1041)
.+++++|.+++....+. .++...+..++..+...++++++..++++..... ..++...|..+...+.+.|+.++|++
T Consensus 90 ~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 34555555555554443 2455667778888999999999999999987642 34566778888899999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001632 878 LIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGI 957 (1041)
Q Consensus 878 ~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 957 (1041)
.+++..+. .+.|......++..+...|+.+++.++++...+.. +.|+..+..++.+|...|+.++|+.++++..+. .
T Consensus 168 ~~~~al~~-~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~ 244 (280)
T PF13429_consen 168 DYRKALEL-DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-N 244 (280)
T ss_dssp HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-S
T ss_pred HHHHHHHc-CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-c
Confidence 99999885 34457778889999999999999999998888753 566778889999999999999999999998874 3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 001632 958 IPDLACYRTMLKGYMDHGYIEEGINLFEEVRES 990 (1041)
Q Consensus 958 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 990 (1041)
+.|+.....++.++...|+.++|..+..++.+.
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp TT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 447888888899999999999999999887653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-09 Score=111.58 Aligned_cols=56 Identities=16% Similarity=0.390 Sum_probs=33.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 364 LLSLYYKNENYSKALSLFSEMEKFKVAAD-EVIYGLLIRIYGKLGLYEDAQKTFAETEQ 421 (1041)
Q Consensus 364 li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 421 (1041)
..+-|.++|++++|++++.+.++. .|| .+-|.....+|...|+|+...+--.+..+
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALE 177 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALE 177 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh
Confidence 334456666677777777666664 344 55566666666666666666555554444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.5e-09 Score=106.39 Aligned_cols=314 Identities=14% Similarity=0.094 Sum_probs=224.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhh-cCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHcc
Q 001632 669 LIGSYGKHQKLKEAQDVFKAAT-VSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCA--LDAVAISILVNTLTNH 745 (1041)
Q Consensus 669 l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~l~~~~~~~ 745 (1041)
+..++-...+.+++..-.+... .+++.+..+-+....+.....++++|..+|+++.++.+- -|..+|+.++-.-...
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 3455666667777777766644 668888877777888888899999999999999998421 1556776666443332
Q ss_pred CCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHH
Q 001632 746 GKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYM 825 (1041)
Q Consensus 746 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 825 (1041)
.+..--....-.+ ..+.|. |...+.+ -|.-.++.++|+..|+++++.+ +....+|+
T Consensus 313 skLs~LA~~v~~i--dKyR~E--TCCiIaN-------------------YYSlr~eHEKAv~YFkRALkLN-p~~~~aWT 368 (559)
T KOG1155|consen 313 SKLSYLAQNVSNI--DKYRPE--TCCIIAN-------------------YYSLRSEHEKAVMYFKRALKLN-PKYLSAWT 368 (559)
T ss_pred HHHHHHHHHHHHh--ccCCcc--ceeeehh-------------------HHHHHHhHHHHHHHHHHHHhcC-cchhHHHH
Confidence 2221111111111 112222 1111222 2455668889999999998876 45567899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 001632 826 NLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAA 905 (1041)
Q Consensus 826 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 905 (1041)
.+.+-|...++...|++-+++.++-. +-|...|-.|.++|.-.+.+.=|+-.|++..+- -+-|...|.+|++.|.+.+
T Consensus 369 LmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~ 446 (559)
T KOG1155|consen 369 LMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLN 446 (559)
T ss_pred HhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhc
Confidence 99999999999999999999999863 237789999999999999999999999999885 4568899999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHH--HHHHHHHHHhcCChHH
Q 001632 906 KYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAA----GIIPDLAC--YRTMLKGYMDHGYIEE 979 (1041)
Q Consensus 906 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~--~~~l~~~~~~~g~~~~ 979 (1041)
+.++|++-|......| ..+...+..|+.+|-+.++.++|..+|++.++. |...+... .--|..-+.+.+++++
T Consensus 447 ~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~ 525 (559)
T KOG1155|consen 447 RLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDE 525 (559)
T ss_pred cHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHH
Confidence 9999999999999876 345678999999999999999999999997762 22222111 1113334456677777
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCc
Q 001632 980 GINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRI 1026 (1041)
Q Consensus 980 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 1026 (1041)
|-.+....... .-..+||..++++++....
T Consensus 526 As~Ya~~~~~~-----------------~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 526 ASYYATLVLKG-----------------ETECEEAKALLREIRKIQA 555 (559)
T ss_pred HHHHHHHHhcC-----------------CchHHHHHHHHHHHHHhcC
Confidence 76665554332 2345777778777766543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-09 Score=112.66 Aligned_cols=288 Identities=13% Similarity=0.090 Sum_probs=217.1
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHH
Q 001632 694 KPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTC 773 (1041)
Q Consensus 694 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 773 (1041)
..+..+...-.+-+...+++.+...+++...+.. ++....+..-|..+...|+..+-..+-.++.+..|. ..++|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhH
Confidence 4566677777888888999999999999998873 456666777777888888887777777777776554 45566666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001632 774 IKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIK 853 (1041)
Q Consensus 774 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 853 (1041)
.-.|.- .|+..+|++.|.+....+ +.-...|-.+.+.|+-.|..++|+..+....+. +.
T Consensus 319 g~YYl~-------------------i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~ 377 (611)
T KOG1173|consen 319 GCYYLM-------------------IGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MP 377 (611)
T ss_pred HHHHHH-------------------hcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-cc
Confidence 654443 455555555555554433 222347889999999999999999999888764 11
Q ss_pred CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC----Chh
Q 001632 854 PGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQ--GIPP----SCT 927 (1041)
Q Consensus 854 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p----~~~ 927 (1041)
-....+--+..-|.+.++.+-|.+.|.+.... .+-|...++-+.-+....+.+.+|...|+..++. .+.+ -..
T Consensus 378 G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p 456 (611)
T KOG1173|consen 378 GCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEP 456 (611)
T ss_pred CCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhH
Confidence 11222333455578899999999999988875 5667888888888888899999999999888841 1111 224
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 001632 928 HVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYR 1006 (1041)
Q Consensus 928 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 1006 (1041)
++++|+++|.+.+.+++|+..+++.+.. .+.|..++.++.-.|...|+++.|+..|.++....|.|..+-..|..+..
T Consensus 457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 457 TLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 6899999999999999999999999885 45588899999999999999999999999999888888777666665443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-10 Score=126.92 Aligned_cols=230 Identities=14% Similarity=0.080 Sum_probs=144.3
Q ss_pred HHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHccCCH
Q 001632 670 IGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILV-NTLTNHGKH 748 (1041)
Q Consensus 670 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~-~~~~~~g~~ 748 (1041)
...+...|++++|...++.+....|.+..++..+..++...|++++|.+++..+.+.++. +...+..+- .+. .+..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~--~~~l 236 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE--IGLL 236 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH--HHHH
Confidence 344455666666666666666555777778888888888888888888888888887543 222221111 100 0000
Q ss_pred HHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCC---CCCCHHHHH
Q 001632 749 EQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLG---LSLDEKAYM 825 (1041)
Q Consensus 749 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~ 825 (1041)
++ +..+++.+.+..+.+.. .+.+...+.
T Consensus 237 ~~-------------------------------------------------~~~~~~~~~L~~~~~~~p~~~~~~~~l~~ 267 (409)
T TIGR00540 237 DE-------------------------------------------------AMADEGIDGLLNWWKNQPRHRRHNIALKI 267 (409)
T ss_pred HH-------------------------------------------------HHHhcCHHHHHHHHHHCCHHHhCCHHHHH
Confidence 00 00111112222222221 124778888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHH
Q 001632 826 NLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISY---NIIINVYAAAGLYNEVEKLIQAMQRDGFSPNS--FTYLSLVQA 900 (1041)
Q Consensus 826 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~l~~~ 900 (1041)
.++..+...|+.++|.+++++..+. .||.... ....-.....++.+.+++.+++..+. .+.|. ....++...
T Consensus 268 ~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l 344 (409)
T TIGR00540 268 ALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-VDDKPKCCINRALGQL 344 (409)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-CCCChhHHHHHHHHHH
Confidence 8889999999999999999999886 3454321 11122223456777788888777664 33344 556678888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 901 YTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 901 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
+.+.|++++|.+.|+........|+...+..++..+.+.|+.++|.+++++.+.
T Consensus 345 ~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 345 LMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888433322457777777888888888888888888887643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-07 Score=100.05 Aligned_cols=585 Identities=14% Similarity=0.108 Sum_probs=305.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001632 370 KNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALD 449 (1041)
Q Consensus 370 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 449 (1041)
..+++.....+.+.+.+. .+-...+.....-.+...|+-++|......-...++. +.+.|..+.-.+....++++|+.
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHH
Confidence 445555555555555552 2223444444444555666666766666555544332 45556666666666666777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C
Q 001632 450 VIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQ-V 528 (1041)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 528 (1041)
.+......+ +.|...+.-+.-.-.+.++++..........+..+.....|..+..++.-.|+...|..+++...+.. .
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 766665543 33445555555555566677777777777777666677777888888888888888888888776653 2
Q ss_pred CCCHHHHHHHHH------HHHhcCChhhHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHH
Q 001632 529 DFDEELYRSVMK------IYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMAL 602 (1041)
Q Consensus 529 ~~~~~~~~~ll~------~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (1041)
.|+...|..... ...+.|.++.|.+.+..-... ........
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~---------------------------------i~Dkla~~ 222 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ---------------------------------IVDKLAFE 222 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH---------------------------------HHHHHHHh
Confidence 456555544332 234556666666555443222 01111222
Q ss_pred HHhhhhccCcccHHHHHHHHHHHhhcCCchhHHHHHH-HHHHHcCCHHHHHH-H--HHcCCCCCHHHHHHHHHHHhccCC
Q 001632 603 GLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLI-CKFIRDGMRLTFKF-L--MKLGYILDDEVTASLIGSYGKHQK 678 (1041)
Q Consensus 603 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~a~~-~--~~~~~~~~~~~~~~l~~~~~~~~~ 678 (1041)
...+.++.+.++.++|..++..++...|+...++... .++.+-.+..++.. + ......|.......+--.......
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~ee 302 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEE 302 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcch
Confidence 3345667778899999999999998777655443333 33322222222221 1 111111111111111111111122
Q ss_pred HHHHHH-HHHH-hhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHc------CC------------CCCHH--HHH
Q 001632 679 LKEAQD-VFKA-ATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQ------GC------------ALDAV--AIS 736 (1041)
Q Consensus 679 ~~~A~~-~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~------------~~~~~--~~~ 736 (1041)
+.+... ++.. +..|.|+ ++..+...|-.-. ++- ++++++.. |. .|... ++.
T Consensus 303 l~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~---k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y 375 (700)
T KOG1156|consen 303 LKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPE---KVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLY 375 (700)
T ss_pred hHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchh---HhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHH
Confidence 222221 1111 2233221 2222232222111 111 22222110 00 12222 223
Q ss_pred HHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCC
Q 001632 737 ILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLG 816 (1041)
Q Consensus 737 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 816 (1041)
.++..+-..|+++.|+.+++..+...+..- -.|-.=.. ++.-.|+++.|..+++.+.+.+
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdHTPTli-Ely~~KaR-------------------I~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDHTPTLI-ELYLVKAR-------------------IFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhccCchHH-HHHHHHHH-------------------HHHhcCChHHHHHHHHHHHhcc
Confidence 334445555555555555555554432100 00000001 5566778888888888888776
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcc--------cHHHH--HHHHHHcCCHHHHHHHHHHHHHc-
Q 001632 817 LSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLI--------SYNII--INVYAAAGLYNEVEKLIQAMQRD- 885 (1041)
Q Consensus 817 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------~~~~l--~~~~~~~g~~~~A~~~~~~m~~~- 885 (1041)
.+|...-.--+....++.+.++|.++.......|. +.+ +|-.+ ..+|.+.|++..|++-|..+.+.
T Consensus 436 -~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~ 512 (700)
T KOG1156|consen 436 -TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHY 512 (700)
T ss_pred -chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence 46666655677778889999999999999988865 332 23222 45678888888888766665442
Q ss_pred -CCCCCHHHHHHH------HHHHHhcC----------C----HHHHHHHHHHHHHCC-CC-CChhHHHHHH----HHHHh
Q 001632 886 -GFSPNSFTYLSL------VQAYTEAA----------K----YSEAEETINSMQKQG-IP-PSCTHVNHLL----SAFSK 938 (1041)
Q Consensus 886 -g~~~~~~~~~~l------~~~~~~~g----------~----~~~A~~~~~~~~~~~-~~-p~~~~~~~l~----~~~~~ 938 (1041)
.+..|.+-|.+. ..+|...= . ...|+++|=.|.+.. .. +.......+. ....+
T Consensus 513 ~~~~~dqfDfhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k 592 (700)
T KOG1156|consen 513 KTWSEDQFDFHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAAKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKK 592 (700)
T ss_pred HHHhhhhhhHHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHH
Confidence 122233322221 01111110 1 134666776666531 00 1111111111 11111
Q ss_pred c-CCHHHHHHHHHHHH---------HCCCC--CCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 001632 939 A-GLMAEATRVYNESL---------AAGII--PDLACYRTMLKGYMDH-GYIEEGINLFEEVRESSESDKFIMSAAVHLY 1005 (1041)
Q Consensus 939 ~-g~~~~A~~~~~~~~---------~~~~~--p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 1005 (1041)
+ .+-.+|.+--+.+. +.|.+ +|.. -+..-+.+. .-.++|..++..+....+.+..++.....+|
T Consensus 593 ~rk~~kk~~~e~~~~~~~~~~~~~s~~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely 669 (700)
T KOG1156|consen 593 QRKAKKKAKKEAKKKKDKKKKEAKSQSGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNLQHKGKEKGETYILSFELY 669 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHHHHhcccchhhhhhhHHHH
Confidence 1 11222222222221 11322 3333 234444444 4478899999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHhhc
Q 001632 1006 RYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 1006 ~~~g~~~eA~~~~~~~~~ 1023 (1041)
.+.|++.-|.+.+++...
T Consensus 670 ~rk~k~~l~~~~~~~~~~ 687 (700)
T KOG1156|consen 670 YRKGKFLLALACLNNAEG 687 (700)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 999999999998887654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.2e-10 Score=122.35 Aligned_cols=284 Identities=12% Similarity=0.022 Sum_probs=194.9
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHH--HHHHHHHhcCChHHHH
Q 001632 266 KSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYS--QLISLSIKHGKSDEAL 343 (1041)
Q Consensus 266 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~A~ 343 (1041)
.|++++|.+.+....+..-.| ...|........+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 577777776666544432111 222333344446778888888888887765 44543332 2245667788888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHH
Q 001632 344 SLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEV-------IYGLLIRIYGKLGLYEDAQKTF 416 (1041)
Q Consensus 344 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~ 416 (1041)
..++++.+.... +...+..+...|.+.|+++.|.+++..+.+.+..++.. .|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888887766533 45667777778888888888888888887765442221 2222233333334455555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 001632 417 AETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPD 496 (1041)
Q Consensus 417 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 496 (1041)
+.+.+. .+.+......+...+...|+.++|..+++...+. .++.. ..++.+.+..++.+++.+..+...+..+.|
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 555432 2346777778888888888888888888888774 33442 123444455688888888888888888888
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 001632 497 AGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGK 560 (1041)
Q Consensus 497 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 560 (1041)
...+.++...+.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888889999999999999999999988874 68888888899999999999999888887544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.1e-11 Score=128.74 Aligned_cols=291 Identities=14% Similarity=0.031 Sum_probs=219.0
Q ss_pred CCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCCHHHHHHH
Q 001632 677 QKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGC--ALDAVAISILVNTLTNHGKHEQAEII 754 (1041)
Q Consensus 677 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 754 (1041)
-+..+|...|..+.........+...+..+|...+++++|..+|+.+..... .-+..+|.+.+-.+- +. -++..
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~-v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DE-VALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hh-HHHHH
Confidence 3567889999886655555556777899999999999999999999987521 114456666554443 22 23333
Q ss_pred HHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001632 755 IHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKA 834 (1041)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 834 (1041)
+.+-+-..-+..+.+|.++...|.- +++.+.|++.|+++...+ +....+|+.+.+-+...
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSL-------------------Qkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ 468 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSL-------------------QKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIAT 468 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhh-------------------hhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhh
Confidence 3332222334467789999886544 456666666666666543 23677899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001632 835 GKTHEASLLFSEMQEEGIKPGL-ISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEET 913 (1041)
Q Consensus 835 g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 913 (1041)
..+|+|+..|+..+.. .|.. -.|-.|...|.+.++++.|+-.|++..+- -+-+.+....++..+.+.|+.++|+.+
T Consensus 469 ee~d~a~~~fr~Al~~--~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I-NP~nsvi~~~~g~~~~~~k~~d~AL~~ 545 (638)
T KOG1126|consen 469 EEFDKAMKSFRKALGV--DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI-NPSNSVILCHIGRIQHQLKRKDKALQL 545 (638)
T ss_pred HHHHhHHHHHHhhhcC--CchhhHHHHhhhhheeccchhhHHHHHHHhhhcC-CccchhHHhhhhHHHHHhhhhhHHHHH
Confidence 9999999999998764 2322 34555678899999999999999999885 245677777888899999999999999
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 001632 914 INSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSES 993 (1041)
Q Consensus 914 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 993 (1041)
++++...+ +.|+..-...+..+...+++++|+..++++++. .+-+...+-.++..|.+.|+.+.|+.-|.-+.+..|+
T Consensus 546 ~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 546 YEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 99999865 566666677888899999999999999999984 3335677888889999999999999999999887776
Q ss_pred hHH
Q 001632 994 DKF 996 (1041)
Q Consensus 994 ~~~ 996 (1041)
-..
T Consensus 624 g~~ 626 (638)
T KOG1126|consen 624 GAQ 626 (638)
T ss_pred cch
Confidence 443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.4e-09 Score=110.54 Aligned_cols=403 Identities=15% Similarity=0.133 Sum_probs=251.7
Q ss_pred HHhhhhccCcccHHHHHHHHHHHhhcC-CchhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHh--ccCCH
Q 001632 603 GLMLSLYLTDDNFSKREKILKLLLHTA-GGSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYG--KHQKL 679 (1041)
Q Consensus 603 ~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~ 679 (1041)
..-+..+...+++++|.+...+++... .+...+.+-+-++++.+++++|..+++.....+......+=.+|| +.+..
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccH
Confidence 334566778899999999999999874 456678889999999999999998665543222221111344554 78999
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 001632 680 KEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCAL-DAVAISILVNTLTNHGKHEQAEIIIHNS 758 (1041)
Q Consensus 680 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 758 (1041)
++|...++.+. +.+..+...-...+.+.|++++|+++|+.+.+++..- |...-..++.+-.. ..+ . +.+.
T Consensus 96 Dealk~~~~~~---~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~-~-~~q~ 166 (652)
T KOG2376|consen 96 DEALKTLKGLD---RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV-Q-LLQS 166 (652)
T ss_pred HHHHHHHhccc---ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH-H-HHHh
Confidence 99999998444 4455567777788899999999999999998874321 11111111111110 011 0 1111
Q ss_pred ccCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHH------------------------------HHhccCChHHHHH
Q 001632 759 FQDNLDLD-TVAYNTCIKAMLGAGKLHFAASIYERML------------------------------VYGRGRKLDKALE 807 (1041)
Q Consensus 759 ~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~------------------------------~~~~~~~~~~A~~ 807 (1041)
....+..+ ...||. .-.+...|+|.+|+++++... ++...|+.++|..
T Consensus 167 v~~v~e~syel~yN~-Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNT-ACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred ccCCCcchHHHHHHH-HHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 11111111 122332 234567888989988888773 6778899999999
Q ss_pred HHHHHHHCCCCCCHH----HHHHHHHHHHhc---------------CCH-HHHHHHH-----------------------
Q 001632 808 MFNTARSLGLSLDEK----AYMNLVSFYGKA---------------GKT-HEASLLF----------------------- 844 (1041)
Q Consensus 808 ~~~~~~~~~~~~~~~----~~~~l~~~~~~~---------------g~~-~~A~~~~----------------------- 844 (1041)
+|..++.... +|.. .-|.|+..-... +.+ +.+..-|
T Consensus 246 iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~ 324 (652)
T KOG2376|consen 246 IYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMD 324 (652)
T ss_pred HHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 9999988763 3332 222222211000 000 0000000
Q ss_pred --HHHHHc--CCCCCcccHHHHHHH-H-HHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH--
Q 001632 845 --SEMQEE--GIKPGLISYNIIINV-Y-AAAGLYNEVEKLIQAMQRDGFSPN-SFTYLSLVQAYTEAAKYSEAEETIN-- 915 (1041)
Q Consensus 845 --~~m~~~--g~~p~~~~~~~l~~~-~-~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~-- 915 (1041)
++.... +..|... +.+++.. + .+...+.+|.+++...-+. .+.. ......+++....+|+++.|.+++.
T Consensus 325 q~r~~~a~lp~~~p~~~-~~~ll~~~t~~~~~~~~ka~e~L~~~~~~-~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 325 QVRELSASLPGMSPESL-FPILLQEATKVREKKHKKAIELLLQFADG-HPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHHHhCCccCchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhcc-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 111111 2233322 2333332 2 2333578888888877664 3333 4556667778889999999999999
Q ss_pred ------HHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHH----HHHHhcCChHHHHHH
Q 001632 916 ------SMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAA--GIIPDLACYRTML----KGYMDHGYIEEGINL 983 (1041)
Q Consensus 916 ------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~----~~~~~~g~~~~A~~~ 983 (1041)
.+.+.+..| .+...+...+.+.++.+-|..++.+.+.. .-.+.....++++ .--.++|+-++|...
T Consensus 403 ~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 403 LESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred hhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 666655445 45566777888888777777777776532 0122233333333 334578999999999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 001632 984 FEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSM 1021 (1041)
Q Consensus 984 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 1021 (1041)
++++.+..|+|..++..++-+|+.. +.+.|..+=+.+
T Consensus 481 leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 481 LEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999999999999999999974 557777765544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-08 Score=100.21 Aligned_cols=190 Identities=12% Similarity=0.088 Sum_probs=119.3
Q ss_pred HHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHH
Q 001632 795 VYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSF-----YGKAGKTHEASLLFSEMQEEGIKPGL-ISYNIIINVYAA 868 (1041)
Q Consensus 795 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~ 868 (1041)
-|.+.+++.+|..+.+.+.. ..|-....-.++.+ ......+.-|.+.|+-.-+.+..-|. ....++...+.-
T Consensus 294 YyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL 371 (557)
T KOG3785|consen 294 YYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL 371 (557)
T ss_pred eecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence 35666777777766655432 12333333333322 12223456677777766665554444 335567777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 001632 869 AGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRV 948 (1041)
Q Consensus 869 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 948 (1041)
..++++++..++.+...=...|.+.+| +.++++..|++.+|+++|-.+....++.+..-...|+++|.++|..+-|-++
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 788888888888877753334444444 6788888999999999888777654444444445677888888888877666
Q ss_pred HHHHHHCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHhc
Q 001632 949 YNESLAAGIIPDLACYRTM-LKGYMDHGYIEEGINLFEEVRES 990 (1041)
Q Consensus 949 ~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~ 990 (1041)
+-++ .-+.+......+ ...|++.+++=-|-+.|+.+...
T Consensus 451 ~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 451 MLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 6554 233344444333 45788888887777777766543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.7e-09 Score=110.61 Aligned_cols=495 Identities=13% Similarity=0.069 Sum_probs=303.7
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001632 461 LSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMK 540 (1041)
Q Consensus 461 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 540 (1041)
.+..-+..+++-+.....+..|.-+-+++...+ .++...-.+..++.-.++++.|..++..-.-. ..|..+......
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 345667777777777778888888888777666 55566666788888888888888777654221 236677777778
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHH
Q 001632 541 IYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREK 620 (1041)
Q Consensus 541 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 620 (1041)
++.+..++++|..++..-... -+... ..+....+.+..-..........-.+.+.-+|.
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~---~~~f~------------yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk------ 149 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVE---TNPFS------------YYEKDAANTLELNSAGEDLMINLESSICYLRGK------ 149 (611)
T ss_pred HHHHHHHHHHHHHHhcccchh---hcchh------------hcchhhhceeccCcccccccccchhceeeeeee------
Confidence 888888899888887742100 00000 000000000000000000000000001111111
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHhh--cCCCCCh
Q 001632 621 ILKLLLHTAGGSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKH-QKLKEAQDVFKAAT--VSCKPGK 697 (1041)
Q Consensus 621 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~--~~~~~~~ 697 (1041)
.|....++++|....+.++..|...+.++...-... --.++-.++|+.+. .....++
T Consensus 150 --------------------~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~ 209 (611)
T KOG1173|consen 150 --------------------VYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDV 209 (611)
T ss_pred --------------------hhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHH
Confidence 111222233333333333333333333222211110 01112222222211 0111122
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHH
Q 001632 698 LVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAM 777 (1041)
Q Consensus 698 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 777 (1041)
.....+.....-...-++....-.+..-.+..-+.........-+...+++.+..++...+.+..+- ....+..-|..+
T Consensus 210 e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpf-h~~~~~~~ia~l 288 (611)
T KOG1173|consen 210 ERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPF-HLPCLPLHIACL 288 (611)
T ss_pred HHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCC-CcchHHHHHHHH
Confidence 2222222211111111111111111111233446666777777788889999999999998876542 222233333333
Q ss_pred HhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc-
Q 001632 778 LGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGL- 856 (1041)
Q Consensus 778 ~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 856 (1041)
. +.|+..+-..+-.++.+. .|....+|-++.-.|.-.|+..+|++.|.+...- .|.-
T Consensus 289 ~-------------------el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--D~~fg 346 (611)
T KOG1173|consen 289 Y-------------------ELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--DPTFG 346 (611)
T ss_pred H-------------------HhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--Ccccc
Confidence 3 344445555555555554 3566778999999999999999999999998764 3332
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 001632 857 ISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAF 936 (1041)
Q Consensus 857 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 936 (1041)
..|..+...|+-.|..+.|+..+...-+. ++-....+..+.--|.+.++.+.|.++|.+..... |.|+...+-++-..
T Consensus 347 paWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvva 424 (611)
T KOG1173|consen 347 PAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVA 424 (611)
T ss_pred HHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhhee
Confidence 57888999999999999999999887764 44455566667777999999999999999999853 66777888888888
Q ss_pred HhcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCC
Q 001632 937 SKAGLMAEATRVYNESLAA--GIIP----DLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGK 1010 (1041)
Q Consensus 937 ~~~g~~~~A~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 1010 (1041)
...+.+.+|..+|+..++. ...+ =..+++.|..+|.+.+.+++|+..++++....|.|+.++..++.+|...|+
T Consensus 425 y~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn 504 (611)
T KOG1173|consen 425 YTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN 504 (611)
T ss_pred ehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC
Confidence 8899999999999998732 0111 234688899999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhcc
Q 001632 1011 EHEANDILDSMNSV 1024 (1041)
Q Consensus 1011 ~~eA~~~~~~~~~~ 1024 (1041)
.+.|.+.+.+.+-.
T Consensus 505 ld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 505 LDKAIDHFHKALAL 518 (611)
T ss_pred hHHHHHHHHHHHhc
Confidence 99999999887653
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.2e-09 Score=111.26 Aligned_cols=413 Identities=17% Similarity=0.150 Sum_probs=278.1
Q ss_pred cCcccHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHH---HHHHHHHHHhccCCHHHHHHH
Q 001632 610 LTDDNFSKREKILKLLLHTAG-GSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDE---VTASLIGSYGKHQKLKEAQDV 685 (1041)
Q Consensus 610 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~ 685 (1041)
...+++.+-++.++.++...+ ...+.....-.+...|+.++|......|+..|.. .+..+.-.+-...++++|++.
T Consensus 18 yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 345889999999999988533 3445555556788899999999988888776653 455666667778899999999
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCC-CC
Q 001632 686 FKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDN-LD 764 (1041)
Q Consensus 686 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 764 (1041)
|..+....+.|..+|.-+.-.-++.++++...+......+.. ......|..+.-+..-.|+...|..+++...+.. -.
T Consensus 98 y~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 98 YRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999887778999999999988999999999999988888752 1244567777778888899999999999887765 24
Q ss_pred CChhhHHHHH------HHHHhcCChhHHHHHHHHHH---------------HHhccCChHHHHHHHHHHHHCCCCCCHHH
Q 001632 765 LDTVAYNTCI------KAMLGAGKLHFAASIYERML---------------VYGRGRKLDKALEMFNTARSLGLSLDEKA 823 (1041)
Q Consensus 765 ~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~---------------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 823 (1041)
|+...|.... ..+..+|.++.|.+.....- .+.+.+++++|..+|..++... +.|...
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Y 255 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDY 255 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHH
Confidence 4444443322 23455677777766554322 5667778888888888877764 233334
Q ss_pred HHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCcccHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001632 824 YMNLVSFYGKAGKTHEAS-LLFSEMQEEGIKPGLISYN-IIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAY 901 (1041)
Q Consensus 824 ~~~l~~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 901 (1041)
|..+..++.+-.+.-++. .+|....+. .|-...-. .=++......-.+..-+.+..+.+.|+++--..+.+| |
T Consensus 256 y~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---y 330 (700)
T KOG1156|consen 256 YEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---Y 330 (700)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH---H
Confidence 444455554333333444 555555443 11111111 1111111112233334555666666765543333333 3
Q ss_pred HhcCCHHHHHHHHHHHHH----CC----------CCCChhHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHH
Q 001632 902 TEAAKYSEAEETINSMQK----QG----------IPPSCTHV--NHLLSAFSKAGLMAEATRVYNESLAAGIIPD-LACY 964 (1041)
Q Consensus 902 ~~~g~~~~A~~~~~~~~~----~~----------~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~ 964 (1041)
-.-...+-.+++...+.. .| -+|....| ..++..|-+.|+++.|+.+++.++.. -|+ ..-|
T Consensus 331 k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly 408 (700)
T KOG1156|consen 331 KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELY 408 (700)
T ss_pred hchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHH
Confidence 222122211222222221 10 14555544 46677888999999999999999874 454 4467
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCccchhc
Q 001632 965 RTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRIPFMKN 1031 (1041)
Q Consensus 965 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~ 1031 (1041)
..-.+.+...|++++|..+++++++...+|..+....+....++.+.++|.++....-..|.....+
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~ 475 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNN 475 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhh
Confidence 7777889999999999999999999999999999999999999999999999999998888644333
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-09 Score=106.26 Aligned_cols=225 Identities=15% Similarity=0.167 Sum_probs=146.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHHHH
Q 001632 336 HGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFK-VAAD--EVIYGLLIRIYGKLGLYEDA 412 (1041)
Q Consensus 336 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~A 412 (1041)
+.+.++|.++|-+|.+.+.. +..+--+|-+.|-+.|..+.|+++.+.+.++. ..-+ ....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 34555555555555543211 23334445555555566666666665555431 1101 11223345556666777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHH
Q 001632 413 QKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSR----FAYIVMLQCYVMKEDLGSAEGTFQT 488 (1041)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~ 488 (1041)
+.+|..+.+.+.. -......|+..|-...++++|++.-+++.+.+-.+.. ..|.-|...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 7777766654321 2345556677777777777777777776665443332 2556666666677788888888888
Q ss_pred HHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 001632 489 LAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNG 562 (1041)
Q Consensus 489 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 562 (1041)
..+.++..+.+--.+.+.+...|+++.|.+.++.+.+.+...-..+...|..+|.+.|+.++....+..+.+..
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 88877777777777788888888888888888888887666667778888888888898888888888887763
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-07 Score=100.91 Aligned_cols=249 Identities=14% Similarity=0.144 Sum_probs=146.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-C--------CCCCHHHHHHHHHH
Q 001632 192 LYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTFYSAVKER-G--------IVPSTAVFNFMLSS 262 (1041)
Q Consensus 192 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~--------~~~~~~~~~~li~~ 262 (1041)
.|...|+.+.|.+-.+-+. +...|..|.+.|.+..+.+-|.-.+-.|... | -.++ .+-.-+...
T Consensus 737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 3445566666655554443 2355666666666666666555555444321 1 0111 111112222
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHH
Q 001632 263 LHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEA 342 (1041)
Q Consensus 263 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 342 (1041)
....|..++|+.+|++-++ |..|=..|-..|.+++|.++-+.=-... =..||..-..-+-..++.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHH
Confidence 3356777778887777655 3445555666788888877664422211 124566666666667778888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001632 343 LSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQL 422 (1041)
Q Consensus 343 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 422 (1041)
++.|++-.. |-...+. ++ ..++...+++.+.+. |...|......+-..|+.+.|+.+|....+
T Consensus 878 leyyEK~~~----hafev~r-mL-----~e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D- 940 (1416)
T KOG3617|consen 878 LEYYEKAGV----HAFEVFR-ML-----KEYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD- 940 (1416)
T ss_pred HHHHHhcCC----hHHHHHH-HH-----HhChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh-
Confidence 887776421 1111111 11 122333333333332 456677777777788889988888876554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 001632 423 GLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLA 490 (1041)
Q Consensus 423 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 490 (1041)
|-.+++..|-+|+.++|-++-++-. |....-.|.+.|-..|++.+|...|.+..
T Consensus 941 --------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 --------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred --------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5667777888888888888877632 44566678888888888888888887554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-10 Score=116.95 Aligned_cols=202 Identities=13% Similarity=0.101 Sum_probs=168.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001632 819 LDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLV 898 (1041)
Q Consensus 819 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 898 (1041)
.....+..+...|...|++++|...+++..+.. ..+...+..+...|...|++++|++.+++..+. .+.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL-NPNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHH
Confidence 335677788899999999999999999998763 123567788889999999999999999999886 345667788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 001632 899 QAYTEAAKYSEAEETINSMQKQGI-PPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYI 977 (1041)
Q Consensus 899 ~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 977 (1041)
..+...|++++|.+.++++.+... +.....+..++.++...|++++|.+.+++.++. .+.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI-DPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCChHHHHHHHHHHHHcCCH
Confidence 899999999999999999987432 233456778899999999999999999999875 333567788888999999999
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 001632 978 EEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 978 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 1023 (1041)
++|...++++.+..+.++..+..++.++...|+.++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999998887777888888899999999999999999888754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-07 Score=92.61 Aligned_cols=166 Identities=16% Similarity=0.069 Sum_probs=87.7
Q ss_pred HHHHHhccCCHHHHHHHHHHhhcC-C-CCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 001632 669 LIGSYGKHQKLKEAQDVFKAATVS-C-KPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHG 746 (1041)
Q Consensus 669 l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 746 (1041)
+..-.+....+.-|.+.|..+-.+ . ...+.--.++...+.-..++++.+..++.+..--..-|...+ .+..+.+..|
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atg 407 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATG 407 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhc
Confidence 333344444566777877775421 1 223334556777777777888888777777665333333333 3445555556
Q ss_pred CHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 001632 747 KHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMN 826 (1041)
Q Consensus 747 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 826 (1041)
++.+|+++|-.+.. ..+..+..-...
T Consensus 408 ny~eaEelf~~is~------------------------------------------------------~~ikn~~~Y~s~ 433 (557)
T KOG3785|consen 408 NYVEAEELFIRISG------------------------------------------------------PEIKNKILYKSM 433 (557)
T ss_pred ChHHHHHHHhhhcC------------------------------------------------------hhhhhhHHHHHH
Confidence 55555555544332 222222222334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 001632 827 LVSFYGKAGKTHEASLLFSEMQEEGIKPGLISY-NIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTY 894 (1041)
Q Consensus 827 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 894 (1041)
|..+|..+++.+-|..++-++-. .-+..+. ..+.+.|.+.+.+--|.+.|+.+.. ..|+...|
T Consensus 434 LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 434 LARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 56667777777776555544422 1122222 2334556666666666666665554 34555444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-09 Score=104.46 Aligned_cols=295 Identities=13% Similarity=0.102 Sum_probs=200.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 001632 710 CGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASI 789 (1041)
Q Consensus 710 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 789 (1041)
++++++|.++|-+|.+... -...+--+|-+.|.+.|..|.|+.+.+.+.+..-- |+..-. ..+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdl----T~~qr~------------lAl 110 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDL----TFEQRL------------LAL 110 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCC----chHHHH------------HHH
Confidence 5788899999999988521 12234456677788889999999998887765311 111111 111
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcc----cHHHHHHH
Q 001632 790 YERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLI----SYNIIINV 865 (1041)
Q Consensus 790 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~l~~~ 865 (1041)
++-..-|-..|-+++|.++|..+.+.+ .--....-.|+..|-+..+|++|+..-+++.+.|-.+..+ -|.-|...
T Consensus 111 ~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~ 189 (389)
T COG2956 111 QQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHH
Confidence 111114666777888888888887754 3345567778999999999999999999998875443322 23344555
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHH
Q 001632 866 YAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEA 945 (1041)
Q Consensus 866 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 945 (1041)
+....+.+.|..++++..+.+ +.....-..+...+...|++..|.+.++.+.+.+..--..+...|..+|...|+.++.
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 190 ALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 556788999999999988862 3334445567788999999999999999999976222335778899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHh---cCChhHHHHHHHHhh
Q 001632 946 TRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRY---AGKEHEANDILDSMN 1022 (1041)
Q Consensus 946 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~eA~~~~~~~~ 1022 (1041)
+..+.++.+. .+....-..+...-....-.+.|..++.+-.. ..|+...+..++..... .|++.+.+.+++.|.
T Consensus 269 ~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~-r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 269 LNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLR-RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHh-hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 9999999874 34444444444433333334555555544333 25666677777776543 566788888888886
Q ss_pred ccCc
Q 001632 1023 SVRI 1026 (1041)
Q Consensus 1023 ~~~~ 1026 (1041)
...+
T Consensus 346 ge~l 349 (389)
T COG2956 346 GEQL 349 (389)
T ss_pred HHHH
Confidence 5433
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-06 Score=97.66 Aligned_cols=274 Identities=12% Similarity=0.035 Sum_probs=140.1
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHH----HHHHHHccCCHHHHHHHHH
Q 001632 682 AQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQ-GCALDAVAISI----LVNTLTNHGKHEQAEIIIH 756 (1041)
Q Consensus 682 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~ 756 (1041)
|.-..+..-.+.|.+...|.......-+.+.+.+|.++..+.+.- ..+.|..+|+. +...++..|.++.|...+.
T Consensus 952 As~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~ 1031 (1238)
T KOG1127|consen 952 ASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASW 1031 (1238)
T ss_pred hHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhc
Confidence 333344444566778888888888888888888888877775421 01223444442 2334555566665533322
Q ss_pred HhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhc
Q 001632 757 NSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSL-GLSLD-EKAYMNLVSFYGKA 834 (1041)
Q Consensus 757 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~ 834 (1041)
..-. .++...+. .+- ...-.++++++.+.|++++.. .-..+ +.....++-+...+
T Consensus 1032 ~~~~-------evdEdi~g-------t~l---------~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~ 1088 (1238)
T KOG1127|consen 1032 KEWM-------EVDEDIRG-------TDL---------TLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLA 1088 (1238)
T ss_pred ccch-------hHHHHHhh-------hhH---------HHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhc
Confidence 1110 00000000 000 011135677777777777653 11223 23455566666778
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCCHHHH
Q 001632 835 GKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRD----GFSPNSFTYLSLVQAYTEAAKYSEA 910 (1041)
Q Consensus 835 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~~~~~~~~l~~~~~~~g~~~~A 910 (1041)
+.-+.|...+-+.... -+|+..+.-.+...+.-..+-.....+++++.+. -+.-+..-... ..|.+.|+-.-.
T Consensus 1089 ~~k~~A~~lLfe~~~l-s~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e--~i~~~~~r~~~v 1165 (1238)
T KOG1127|consen 1089 RQKNDAQFLLFEVKSL-SKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKE--LIYALQGRSVAV 1165 (1238)
T ss_pred ccchHHHHHHHHHHHh-CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHH--HHHHHhhhhHHH
Confidence 8888888887777664 2455555555555554444433333344443331 01111111222 236788888888
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 001632 911 EETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRES 990 (1041)
Q Consensus 911 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 990 (1041)
.+.+++.+-.. |.|+..|..|-.-|.. +-.+ +.++-+-+-.+|+-. ..++-.+++.-.
T Consensus 1166 k~~~qr~~h~~-P~~~~~WslL~vrya~------------~n~~-----n~v~a~~~~k~y~~t----~~l~~iQ~a~~L 1223 (1238)
T KOG1127|consen 1166 KKQIQRAVHSN-PGDPALWSLLSVRYAQ------------RNAK-----NGVVANHGKKAYLYT----AVLKTIQKAALL 1223 (1238)
T ss_pred HHHHHHHHhcC-CCChHHHHHHHHHHHH------------Hhcc-----CCeehhHHHHHHHHH----HHHHHHHHHHhc
Confidence 88888888753 4555566554422221 1111 111113344444322 235555565566
Q ss_pred cCChHHHHHHHHH
Q 001632 991 SESDKFIMSAAVH 1003 (1041)
Q Consensus 991 ~~~~~~~~~~l~~ 1003 (1041)
.|-|+.++-.|..
T Consensus 1224 ~Pwd~a~wkaL~~ 1236 (1238)
T KOG1127|consen 1224 SPWDPAIWKALMA 1236 (1238)
T ss_pred CCCCHHHHHHHhh
Confidence 7888877766643
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.2e-10 Score=130.40 Aligned_cols=177 Identities=12% Similarity=-0.041 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHcCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001632 837 THEASLLFSEMQEEGIKP-GLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETIN 915 (1041)
Q Consensus 837 ~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 915 (1041)
+++|...+++..+. .| +...+..+..++...|++++|+..|++..+. .+.+...+..+..++...|++++|...++
T Consensus 320 ~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 320 MIKAKEHAIKATEL--DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL-SPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44555555555443 22 2233444444445555555555555555443 12233344444455555555555555555
Q ss_pred HHHHCCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 001632 916 SMQKQGIPPSCT-HVNHLLSAFSKAGLMAEATRVYNESLAAGIIP-DLACYRTMLKGYMDHGYIEEGINLFEEVRESSES 993 (1041)
Q Consensus 916 ~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 993 (1041)
++.+.+ |+.. .+..++..+...|++++|+..++++++. .+| ++..+..+...|...|++++|...++++....|.
T Consensus 397 ~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 397 ECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ-HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 555532 3221 2222333344445555555555554432 122 2333344444444555555555555554444344
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 001632 994 DKFIMSAAVHLYRYAGKEHEANDILDSM 1021 (1041)
Q Consensus 994 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 1021 (1041)
+......++..|...| ++|...++++
T Consensus 474 ~~~~~~~l~~~~~~~g--~~a~~~l~~l 499 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS--ERALPTIREF 499 (553)
T ss_pred hHHHHHHHHHHHhccH--HHHHHHHHHH
Confidence 4444444444444444 2444444443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3e-07 Score=100.33 Aligned_cols=358 Identities=14% Similarity=0.071 Sum_probs=227.1
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 001632 658 GYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISI 737 (1041)
Q Consensus 658 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 737 (1041)
.+..|..++..+.-++..+|+++.+.+.|++.....-.....|..+...|..+|.-..|..+++........|+..+...
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 45578889999999999999999999999997766666778899999999999999999999998876644465555555
Q ss_pred HHHHHH--ccCCHHHHHHHHHHhccC--C--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHH
Q 001632 738 LVNTLT--NHGKHEQAEIIIHNSFQD--N--LDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNT 811 (1041)
Q Consensus 738 l~~~~~--~~g~~~~A~~~~~~~~~~--~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~ 811 (1041)
++...| +.+..++++.+..+++.. + -......|-.+.-+|...- .+|..-. .+.....++++.+++
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--~~a~~~s------eR~~~h~kslqale~ 469 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--RQANLKS------ERDALHKKSLQALEE 469 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--hcCCChH------HHHHHHHHHHHHHHH
Confidence 554433 557888888888887762 2 1223333444333332110 0000000 011123455666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 001632 812 ARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNS 891 (1041)
Q Consensus 812 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 891 (1041)
..+.+. .|..+.--+.--|+..++++.|+...++..+-+-.-+...|..++-++...+++.+|+.+.+...+. +..|.
T Consensus 470 av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~ 547 (799)
T KOG4162|consen 470 AVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNH 547 (799)
T ss_pred HHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhh
Confidence 655442 2222222233346666777777777777777644556677777777777777777777776665542 11111
Q ss_pred --------------------HHHHHHHHHHH-----------------------hcCCHHHHHHHHHHHHH--------C
Q 001632 892 --------------------FTYLSLVQAYT-----------------------EAAKYSEAEETINSMQK--------Q 920 (1041)
Q Consensus 892 --------------------~~~~~l~~~~~-----------------------~~g~~~~A~~~~~~~~~--------~ 920 (1041)
.|...++..+. ..++..+|.+....+.. .
T Consensus 548 ~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 548 VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 11111111111 00111122222211110 0
Q ss_pred C----CC-------CCh------hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 001632 921 G----IP-------PSC------THVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINL 983 (1041)
Q Consensus 921 ~----~~-------p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 983 (1041)
| ++ |+. ..|....+.+.+.+..++|.--+.++.+. .+-....|......+...|++++|.+.
T Consensus 628 ~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~a 706 (799)
T KOG4162|consen 628 GSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEA 706 (799)
T ss_pred ccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHH
Confidence 1 11 111 13445667788888889998888887763 333566777777788899999999999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcCChhHHHH--HHHHhhccCc
Q 001632 984 FEEVRESSESDKFIMSAAVHLYRYAGKEHEAND--ILDSMNSVRI 1026 (1041)
Q Consensus 984 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~--~~~~~~~~~~ 1026 (1041)
|..+....|.+..+...++.++...|+..-|.. ++..+.+.+-
T Consensus 707 f~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 707 FLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 999999999999999999999999998888887 8888877664
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.4e-09 Score=104.58 Aligned_cols=285 Identities=11% Similarity=0.072 Sum_probs=170.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 001632 710 CGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASI 789 (1041)
Q Consensus 710 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 789 (1041)
.|++.+|..+..+-.+.+-. ....|..-..+-...|+.+.+-.++.++.+....+...++-+........|+
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d------- 168 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD------- 168 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC-------
Confidence 45555555555554443311 1122223333444555555555555555554444444444444443333333
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc-------ccHHHH
Q 001632 790 YERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGL-------ISYNII 862 (1041)
Q Consensus 790 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~l 862 (1041)
+..|..-..++.+.+ +.+..+......+|.+.|++.....++.++.+.|.--|. .+|+.+
T Consensus 169 ------------~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 169 ------------YPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred ------------chhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 333333333344444 455667777777788888888888888887777654332 234444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCH
Q 001632 863 INVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLM 942 (1041)
Q Consensus 863 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 942 (1041)
++-....+..+.-...|+....+ ..-+...-.+++.-+.+.|+.++|.++.++..+++-.|+ ...+ -...+-|+.
T Consensus 236 L~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~ 310 (400)
T COG3071 236 LQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDP 310 (400)
T ss_pred HHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCc
Confidence 44444444444444555555443 444556666677777788888888888888877654444 1111 223355677
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 001632 943 AEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMN 1022 (1041)
Q Consensus 943 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 1022 (1041)
+.-++..++.++. .+-++..+.+|...|.+++.|.+|..+|+.+.. ..++...+.-+++++.+.|+.++|.++.++..
T Consensus 311 ~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~-~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 311 EPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK-LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 7777777777664 444567777888888888888888888887665 56667778888888888888888888777655
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.3e-08 Score=97.59 Aligned_cols=287 Identities=15% Similarity=0.050 Sum_probs=213.6
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 001632 266 KSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSL 345 (1041)
Q Consensus 266 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 345 (1041)
.|+|.+|+++...-.+.+-.| ...|..-+.+.-..|+.+.+-+++.+..+..-.++...+-+....+...|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588888888888766655433 3456666677777888888888888888763355666677777788888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHH
Q 001632 346 YKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEV-------IYGLLIRIYGKLGLYEDAQKTFAE 418 (1041)
Q Consensus 346 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~ 418 (1041)
++++.+.+.. +........++|.+.|++.....++..+.+.|.-.|.. +|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 8888776544 45677778888888888888888888888887655543 445555544444555554455555
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChh
Q 001632 419 TEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAG 498 (1041)
Q Consensus 419 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 498 (1041)
.... .+.+...-.+++.-+.+.|+.++|.+++++..+++..++. ...-.+.+-++...-++..++-.+..+.++.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 5433 3446667777888888889999999998888887766652 1222455667777777777777777777778
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 001632 499 SCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKN 561 (1041)
Q Consensus 499 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 561 (1041)
.+.+|...|.+.+.+.+|...|+...+ ..|+..+|+.+.++|.+.|+...|.++.++....
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 889999999999999999999997766 4788999999999999999999999888876543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-07 Score=102.77 Aligned_cols=84 Identities=15% Similarity=0.132 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001632 463 RFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIY 542 (1041)
Q Consensus 463 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 542 (1041)
...|.-..+..-..|+.+.|+.+|....+ |.++++..|-+|+.++|-.+-++- -|....-.|.+.|
T Consensus 912 ~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~Y 977 (1416)
T KOG3617|consen 912 ESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMY 977 (1416)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHh
Confidence 34455555556667888888888876543 677788888889999988776553 3566677788999
Q ss_pred HhcCChhhHHHHHHHHhh
Q 001632 543 CKEGMVTDAEQFVEEMGK 560 (1041)
Q Consensus 543 ~~~g~~~~A~~~~~~m~~ 560 (1041)
-..|++.+|..+|.+.+.
T Consensus 978 En~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 978 ENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 999999999999887653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.3e-10 Score=127.46 Aligned_cols=226 Identities=14% Similarity=0.005 Sum_probs=172.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHHHcCCHHHHHH
Q 001632 799 GRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPG-LISYNIIINVYAAAGLYNEVEK 877 (1041)
Q Consensus 799 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~ 877 (1041)
.+++++|...++++.+.+ +.+...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|+.
T Consensus 317 ~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 317 QNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred chHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 456788888898888876 567788889999999999999999999999987 455 4567888999999999999999
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001632 878 LIQAMQRDGFSPNS-FTYLSLVQAYTEAAKYSEAEETINSMQKQGIPP-SCTHVNHLLSAFSKAGLMAEATRVYNESLAA 955 (1041)
Q Consensus 878 ~~~~m~~~g~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 955 (1041)
.+++..+. .|+. ..+..++.++...|++++|+..++++.+.. +| +...+..++.+|...|++++|...++++...
T Consensus 394 ~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 394 TINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 99999885 3443 333445556777899999999999998764 34 4456788999999999999999999997663
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCccchhcccc
Q 001632 956 GIIPD-LACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRIPFMKNLEV 1034 (1041)
Q Consensus 956 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~ 1034 (1041)
.|+ ....+.+...|...| ++|...++++.+.....+........+|.-.|+.+.|.-. +++.+.+--+.+.+++
T Consensus 471 --~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~ 545 (553)
T PRK12370 471 --EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDNIWFKRWKQ 545 (553)
T ss_pred --cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccchHhhhhhhc
Confidence 444 445556666777777 4888888887664433333333366777778887777555 9998887766666654
Q ss_pred c
Q 001632 1035 G 1035 (1041)
Q Consensus 1035 ~ 1035 (1041)
-
T Consensus 546 d 546 (553)
T PRK12370 546 D 546 (553)
T ss_pred C
Confidence 3
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.9e-08 Score=96.52 Aligned_cols=280 Identities=13% Similarity=0.131 Sum_probs=164.5
Q ss_pred hcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHhccCCCCCChh
Q 001632 690 TVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVA-ISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTV 768 (1041)
Q Consensus 690 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 768 (1041)
...++.|+.....+.+.+...|+.++|...|++.... .|+..+ +....-.+...|+.++-.++...+....-. ...
T Consensus 225 ~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~ 301 (564)
T KOG1174|consen 225 NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY-TAS 301 (564)
T ss_pred hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc-chh
Confidence 3445566666666666666666666666666665543 232221 111122234455555555555554432200 000
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001632 769 AYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQ 848 (1041)
Q Consensus 769 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 848 (1041)
.|-.-... ....+++..|+.+-++.++.+ +.+...|-.-...+...|+.++|.-.|+..+
T Consensus 302 ~wfV~~~~-------------------l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 302 HWFVHAQL-------------------LYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred hhhhhhhh-------------------hhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 11111111 112234555555555555543 2344445445566667777888877777776
Q ss_pred HcCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHCCCCCC
Q 001632 849 EEGIKP-GLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLV-QAYTE-AAKYSEAEETINSMQKQGIPPS 925 (1041)
Q Consensus 849 ~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~p~ 925 (1041)
.. .| +..+|..|+..|...|.+.+|.-+-.+..+. ++.+..+...+. .++.. -.--++|.++++..+. +.|+
T Consensus 362 ~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~ 436 (564)
T KOG1174|consen 362 ML--APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPI 436 (564)
T ss_pred hc--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCc
Confidence 64 32 4567777888888888888877777666554 444555555442 33322 2223777777777776 3466
Q ss_pred hh-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHH
Q 001632 926 CT-HVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMS 999 (1041)
Q Consensus 926 ~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 999 (1041)
.. ..+.+...+...|..++++.++++.+. ..||....+.|...+...+.+.+|...|..+....|.|-.+..
T Consensus 437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~ 509 (564)
T KOG1174|consen 437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLR 509 (564)
T ss_pred cHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHH
Confidence 44 566777777778888888888888776 5677777777777777777888888888887777777665543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-05 Score=90.74 Aligned_cols=658 Identities=10% Similarity=-0.023 Sum_probs=343.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001632 304 LEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSE 383 (1041)
Q Consensus 304 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 383 (1041)
...|...|-+..+.+ ..=...|..|...|+...+...|.+.|+...+-+.. |......+...|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 556666665555542 112345777777777766777777777777655432 556667777778888888887777433
Q ss_pred HHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 001632 384 MEKFKV-AADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLS 462 (1041)
Q Consensus 384 ~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~ 462 (1041)
..+... ..-..-|....-.|...++...|..-|+...+..+. |...|..+..+|...|.+..|.+.|.+.... .|+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH
Confidence 322110 001112222444556677777777777777665432 6777778888888888888888888776553 232
Q ss_pred HH-HHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-------ChhHHHHHHHHHHhcCCHHHHHHHHHH-------HHHcC
Q 001632 463 RF-AYIVMLQCYVMKEDLGSAEGTFQTLAKTGLP-------DAGSCNDMLNLYIKLDLTEKAKGFIAH-------IRKDQ 527 (1041)
Q Consensus 463 ~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~-------~~~~~ 527 (1041)
.. .--...-..+..|.+.++.+.+..+...... -..++-.+...+...|-..+|.++++. .....
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 21 1112223345667777777777766543221 122222222222223333333333333 22222
Q ss_pred CCCCHHHHHHHHHHH---HhcCChhhHH----HHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhh
Q 001632 528 VDFDEELYRSVMKIY---CKEGMVTDAE----QFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLM 600 (1041)
Q Consensus 528 ~~~~~~~~~~ll~~~---~~~g~~~~A~----~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (1041)
...+...|..+-.+| +....---+. -++.++...+..|+......-...+. .+...-..+.
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~------------~hlsl~~~~~ 776 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGI------------AHLSLAIHMY 776 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhh------------HHHHHhhccc
Confidence 122222232222221 1111000000 11112222233333331110000000 0111122244
Q ss_pred HHHHhhhhccC--------cccHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHcCCHHHHHH-HHH--cCCCCCHHHHHH
Q 001632 601 ALGLMLSLYLT--------DDNFSKREKILKLLLHT-AGGSSVVSQLICKFIRDGMRLTFKF-LMK--LGYILDDEVTAS 668 (1041)
Q Consensus 601 ~~~~~~~~~~~--------~~~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~-~~~--~~~~~~~~~~~~ 668 (1041)
.|.-++..|.. ..+-..|+..+++.+.- ..+...|+.+... ...|.+.-+.. .++ .-.+....++..
T Consensus 777 ~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~N 855 (1238)
T KOG1127|consen 777 PWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLN 855 (1238)
T ss_pred hHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheec
Confidence 55555544443 23345777777777764 4555667776555 55577777766 222 223345567778
Q ss_pred HHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHH--HH--cCCCCCHHHHHHHHHHHHc
Q 001632 669 LIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEA--TA--QGCALDAVAISILVNTLTN 744 (1041)
Q Consensus 669 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~--~g~~~~~~~~~~l~~~~~~ 744 (1041)
+...+.+..+++.|...|.++....|.+...|-.........|+.-++..+|..- .. .|--++..-|.........
T Consensus 856 lgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~ 935 (1238)
T KOG1127|consen 856 LGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQ 935 (1238)
T ss_pred cceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHh
Confidence 8888889999999999999999888999999988888888889888888888762 22 2333343333333333445
Q ss_pred cCCHHHHHHHHHHhcc---------CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHC
Q 001632 745 HGKHEQAEIIIHNSFQ---------DNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSL 815 (1041)
Q Consensus 745 ~g~~~~A~~~~~~~~~---------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 815 (1041)
+|++++-+...+.+-. .+.+.+...|........+.+.++.|.+...+.+ .+++.-
T Consensus 936 Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli------------glLe~k--- 1000 (1238)
T KOG1127|consen 936 NGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI------------GLLELK--- 1000 (1238)
T ss_pred ccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH------------HHHHHH---
Confidence 5655554444333222 1233355666666666666666777666666543 222221
Q ss_pred CCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCC
Q 001632 816 GLSLDEKAYM----NLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRD-GFSPN 890 (1041)
Q Consensus 816 ~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~~~ 890 (1041)
-+...|| .+...++..|.++.|...+...... .+.....+-+.. .-.|+++++++.|++...- .-.-|
T Consensus 1001 ---~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e---vdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d 1073 (1238)
T KOG1127|consen 1001 ---LDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME---VDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESD 1073 (1238)
T ss_pred ---HhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh---HHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccc
Confidence 1222233 2334455556666555444322111 011111111111 3357788888888887652 11223
Q ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--HHH
Q 001632 891 S-FTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACY--RTM 967 (1041)
Q Consensus 891 ~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~l 967 (1041)
. +....+.......+.-+.|...+-+..... +++..+.-.|.-.+.-..+-....-+.+++.+. ......+| ..+
T Consensus 1074 ~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls-~~~~~sll~L~A~~ild~da~~ssaileel~kl-~k~e~~~~~~~ll 1151 (1238)
T KOG1127|consen 1074 KVVLLCKVAVCMGLARQKNDAQFLLFEVKSLS-KVQASSLLPLPAVYILDADAHGSSAILEELEKL-LKLEWFCWPPGLL 1151 (1238)
T ss_pred hhhhhHHHHHHHhhcccchHHHHHHHHHHHhC-ccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHh-hhhHHhccChhHH
Confidence 2 223334444456667777777777766642 455555555544444333333333333333321 11111111 011
Q ss_pred H-HHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHH
Q 001632 968 L-KGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVH 1003 (1041)
Q Consensus 968 ~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 1003 (1041)
+ ..|.+.|+-....+.+++.....|.|+..+..|..
T Consensus 1152 ~e~i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL~v 1188 (1238)
T KOG1127|consen 1152 KELIYALQGRSVAVKKQIQRAVHSNPGDPALWSLLSV 1188 (1238)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 2 23456777778888888888888888888777764
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.7e-09 Score=115.85 Aligned_cols=202 Identities=20% Similarity=0.245 Sum_probs=149.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCC
Q 001632 824 YMNLVSFYGKAGKTHEASLLFSEMQEE-----GI-KPGL-ISYNIIINVYAAAGLYNEVEKLIQAMQRD-----G-FSPN 890 (1041)
Q Consensus 824 ~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g-~~~~ 890 (1041)
.+.+...|...+++++|..+|+++... |- .|.+ .+++.|...|.+.|++++|..++++..+- | ..|+
T Consensus 244 l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~ 323 (508)
T KOG1840|consen 244 LNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPE 323 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHH
Confidence 445778888899999999999888763 32 1222 45667777899999998888877776541 2 2333
Q ss_pred HHH-HHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----C-
Q 001632 891 SFT-YLSLVQAYTEAAKYSEAEETINSMQKQ---GIPPSC----THVNHLLSAFSKAGLMAEATRVYNESLAAG----I- 957 (1041)
Q Consensus 891 ~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~- 957 (1041)
..+ ++.++..+...+++++|..+++...+. -..++. .+++.|+..|.+.|++++|+++++++++.- -
T Consensus 324 v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~ 403 (508)
T KOG1840|consen 324 VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK 403 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC
Confidence 333 556677788999999999999887752 112222 478999999999999999999999987531 1
Q ss_pred -CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh-------ccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccC
Q 001632 958 -IP-DLACYRTMLKGYMDHGYIEEGINLFEEVRE-------SSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVR 1025 (1041)
Q Consensus 958 -~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 1025 (1041)
.+ ....++.|...|.+.+++++|..+|.+... ..|....+|..|+.+|...|++++|.++.+.+....
T Consensus 404 ~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 404 KDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAR 480 (508)
T ss_pred cChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 12 234677888899999999999998888544 123345789999999999999999999999887543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.4e-09 Score=108.08 Aligned_cols=192 Identities=13% Similarity=0.082 Sum_probs=155.7
Q ss_pred HHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHH
Q 001632 795 VYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNE 874 (1041)
Q Consensus 795 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 874 (1041)
.|...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.+++..+... .+...+..+...+...|++++
T Consensus 40 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~g~~~~ 117 (234)
T TIGR02521 40 GYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLCQQGKYEQ 117 (234)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcccHHH
Confidence 3555666777777777766654 45577888899999999999999999999988632 244667788899999999999
Q ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001632 875 VEKLIQAMQRDGF-SPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESL 953 (1041)
Q Consensus 875 A~~~~~~m~~~g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 953 (1041)
|++.+++..+... ......+..+..++...|++++|...+++..+.. +.+...+..++..+...|++++|.+.+++.+
T Consensus 118 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 196 (234)
T TIGR02521 118 AMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQ 196 (234)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999987422 2344567778888999999999999999999864 4456688899999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 001632 954 AAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRES 990 (1041)
Q Consensus 954 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 990 (1041)
+. .+.+...+..++..+...|+.++|..+.+.+...
T Consensus 197 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 197 QT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred Hh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 86 3456777777888888999999999998887654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.5e-07 Score=97.68 Aligned_cols=147 Identities=12% Similarity=0.098 Sum_probs=95.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHH--------HHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 001632 836 KTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQ--------AMQRDGFSPNSFTYLSLVQAYTEAAKY 907 (1041)
Q Consensus 836 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~--------~m~~~g~~~~~~~~~~l~~~~~~~g~~ 907 (1041)
.+.+|.+++...-+....-..+..-.++......|+++.|++++. .+.+.+..|.. ..++...|.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCC
Confidence 467777777777665221123444556667778888888888888 55554444544 34455567777777
Q ss_pred HHHHHHHHHHHH--CCCCCChh----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 001632 908 SEAEETINSMQK--QGIPPSCT----HVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGI 981 (1041)
Q Consensus 908 ~~A~~~~~~~~~--~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 981 (1041)
+-|..++.+.++ ....+... .+.-++.+-.+.|+-++|..+++++++. .++|..+...++.+|.+. |.++|+
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHH
Confidence 777777777764 11122222 3344445556678889999999998875 466788888888888766 467777
Q ss_pred HHHHH
Q 001632 982 NLFEE 986 (1041)
Q Consensus 982 ~~~~~ 986 (1041)
.+-..
T Consensus 512 ~l~k~ 516 (652)
T KOG2376|consen 512 SLSKK 516 (652)
T ss_pred HHhhc
Confidence 66554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-09 Score=105.60 Aligned_cols=218 Identities=12% Similarity=0.067 Sum_probs=175.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccH-HHHHHHHHHcCCHHHHHHHH
Q 001632 801 KLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISY-NIIINVYAAAGLYNEVEKLI 879 (1041)
Q Consensus 801 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~ 879 (1041)
-+.+|.+.|+..+.. .|-+.||-.|...|.+-.+...|+.++.+-.+. .|..+|| ..+.+.+...++.++|+++|
T Consensus 238 m~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~~~~~a~~lY 313 (478)
T KOG1129|consen 238 MPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAMEQQEDALQLY 313 (478)
T ss_pred ChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHHhHHHHHHHH
Confidence 333444444444443 356677777888899999999999999988876 4555554 56788889999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001632 880 QAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIP 959 (1041)
Q Consensus 880 ~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 959 (1041)
+...+. .+.+.....++...|.-.++++-|+.+|+++++.| -.++..|++++-+|.-.+++|-++.-|++.+..--.|
T Consensus 314 k~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~ 391 (478)
T KOG1129|consen 314 KLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQP 391 (478)
T ss_pred HHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCc
Confidence 998885 45566667777778888999999999999999988 4677889999999999999999999999988754445
Q ss_pred C--HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhcc
Q 001632 960 D--LACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSV 1024 (1041)
Q Consensus 960 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 1024 (1041)
+ ..+|-.+.......||+.-|..-|.-+....+.+...++.|+.+-.+.|+.++|..++....+.
T Consensus 392 ~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 392 GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred chhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 4 4567777777888999999999999988889999999999999999999999999999876553
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.2e-09 Score=111.81 Aligned_cols=254 Identities=24% Similarity=0.244 Sum_probs=172.1
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChh-hHHH
Q 001632 694 KPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTV-AYNT 772 (1041)
Q Consensus 694 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ 772 (1041)
|.-..+...+...|...|++++|..+++..++. .+-..|. ..+... ..+.
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~--------------l~k~~G~---------------~hl~va~~l~~ 246 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRI--------------LEKTSGL---------------KHLVVASMLNI 246 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------------HHHccCc---------------cCHHHHHHHHH
Confidence 333445555777777788888887777776653 0000010 001111 1123
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--
Q 001632 773 CIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEE-- 850 (1041)
Q Consensus 773 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-- 850 (1041)
+...|...+++++|..+|++ |+.+++...-...+--..+++.|..+|.+.|++++|...+++..+-
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~------------AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~ 314 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEE------------ALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYE 314 (508)
T ss_pred HHHHHHHhccHHHHHHHHHH------------HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence 44555666666666666654 3344544443333333457888999999999999998888876542
Q ss_pred ---CCC-CCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001632 851 ---GIK-PGL-ISYNIIINVYAAAGLYNEVEKLIQAMQRD---GFSPN----SFTYLSLVQAYTEAAKYSEAEETINSMQ 918 (1041)
Q Consensus 851 ---g~~-p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 918 (1041)
|.. |.+ ..++.++..|...+.+++|..+++...+. -+.++ ..+++.|...|.+.|++++|++++++++
T Consensus 315 ~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai 394 (508)
T KOG1840|consen 315 KLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAI 394 (508)
T ss_pred HhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 222 222 23566778889999999999999987652 12233 3578899999999999999999999998
Q ss_pred HC----CC--CC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHH
Q 001632 919 KQ----GI--PP-SCTHVNHLLSAFSKAGLMAEATRVYNESLA----AGII-PD-LACYRTMLKGYMDHGYIEEGINLFE 985 (1041)
Q Consensus 919 ~~----~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 985 (1041)
.. +- .+ .-..++.|+..|.+.+.+.+|.++|.+... .|.. |+ ..+|..|...|...|++|+|+++.+
T Consensus 395 ~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 395 QILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred HHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 53 11 12 234788999999999999999999998643 2222 23 4689999999999999999999999
Q ss_pred HHH
Q 001632 986 EVR 988 (1041)
Q Consensus 986 ~~~ 988 (1041)
.+.
T Consensus 475 ~~~ 477 (508)
T KOG1840|consen 475 KVL 477 (508)
T ss_pred HHH
Confidence 965
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.1e-07 Score=96.29 Aligned_cols=104 Identities=21% Similarity=0.270 Sum_probs=71.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCH
Q 001632 366 SLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSD-EKTYLAMAQVHLTSRNV 444 (1041)
Q Consensus 366 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~ 444 (1041)
++.+..|+++.|...|.+.+.... +|.+.|+.-..+|.+.|++++|.+=-.+-.+. .|+ ...|+....++...|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 456677888888888888777653 37777888888888888888776655554443 333 45677777777777888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001632 445 EKALDVIELMKSRNMWLSRFAYIVMLQCY 473 (1041)
Q Consensus 445 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 473 (1041)
++|+.-|.+-.+.. +.|...++.+.+++
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 88887777766553 33455566666655
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.6e-09 Score=99.10 Aligned_cols=195 Identities=11% Similarity=0.049 Sum_probs=132.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001632 823 AYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGL-ISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAY 901 (1041)
Q Consensus 823 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 901 (1041)
+...|.-.|...|+...|..-+++.++. .|+. .+|..+...|-+.|..+.|.+.|++..+. -+.+-...|....-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-~p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL-APNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-CCCccchhhhhhHHH
Confidence 4555666777777777777777777776 3433 56667777777777777777777777764 233445566677777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 001632 902 TEAAKYSEAEETINSMQKQGIPPS-CTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEG 980 (1041)
Q Consensus 902 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 980 (1041)
|..|++++|.+.|++..+.-.-+. ..+|.+++.+..++|+.+.|.+++++.++. .+..+.....+...+++.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~-dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL-DPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh-CcCCChHHHHHHHHHHhcccchHH
Confidence 777777777777777776311122 246777777777777777777777777764 222455666777777777777777
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 001632 981 INLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSM 1021 (1041)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 1021 (1041)
..+++......+.+...+-..+.+=...|+-+.|-+.=..+
T Consensus 193 r~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 193 RLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 77777777766777777777777777777766665544443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.7e-09 Score=101.11 Aligned_cols=240 Identities=15% Similarity=0.046 Sum_probs=195.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-
Q 001632 388 KVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAY- 466 (1041)
Q Consensus 388 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~- 466 (1041)
+...|..+-+.+.++|.+.|.+.+|++.|+.-.+. .|-+.||..|-.+|.+..+++.|+.++.+-.+. .|-.+||
T Consensus 218 ~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l 293 (478)
T KOG1129|consen 218 GCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYL 293 (478)
T ss_pred cchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhh
Confidence 34446667788899999999999999999987765 456778888999999999999999999988775 3444444
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 001632 467 IVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEG 546 (1041)
Q Consensus 467 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 546 (1041)
.-..+.+-..++.++|.++|+...+..+.+++...++...|.-.++.+-|+..|+++.+.|+. +...|..+.-+|.-.+
T Consensus 294 ~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaq 372 (478)
T KOG1129|consen 294 LGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQ 372 (478)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhc
Confidence 456678888899999999999999999899999999999999999999999999999999875 8899999999999999
Q ss_pred ChhhHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhhhhhhHHHHhhhhccCcccHHHHHHHHHHHh
Q 001632 547 MVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLL 626 (1041)
Q Consensus 547 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 626 (1041)
+++.++.-|.+....--.|+
T Consensus 373 Q~D~~L~sf~RAlstat~~~------------------------------------------------------------ 392 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTATQPG------------------------------------------------------------ 392 (478)
T ss_pred chhhhHHHHHHHHhhccCcc------------------------------------------------------------
Confidence 99999988887665411111
Q ss_pred hcCCchhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 001632 627 HTAGGSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDA 706 (1041)
Q Consensus 627 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 706 (1041)
.-..++..+.......|++..|.+.|.-.....+.+...+|.|.-.
T Consensus 393 ----------------------------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL 438 (478)
T KOG1129|consen 393 ----------------------------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVL 438 (478)
T ss_pred ----------------------------------hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHH
Confidence 0112344455555667888888888888776777788888888888
Q ss_pred HHhcCChhHHHHHHHHHHHc
Q 001632 707 YAKCGKAEDVYLLYKEATAQ 726 (1041)
Q Consensus 707 ~~~~g~~~~A~~~~~~~~~~ 726 (1041)
-.+.|+.++|..+++.....
T Consensus 439 ~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 439 AARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HhhcCchHHHHHHHHHhhhh
Confidence 88899999999998887764
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.2e-08 Score=105.16 Aligned_cols=200 Identities=19% Similarity=0.115 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-cccHHHHH
Q 001632 785 FAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPG-LISYNIII 863 (1041)
Q Consensus 785 ~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~ 863 (1041)
.+...+.....|...|++++|+..|+++.+.. +.+...|+.+...|...|++++|...|++..+. .|+ ...|..+.
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg 139 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRG 139 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 34445555555555666666666666655543 334555555666666666666666666665553 333 23445555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHH
Q 001632 864 NVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMA 943 (1041)
Q Consensus 864 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 943 (1041)
.++...|++++|++.|++..+. .|+..........+...++.++|...+++..... +|+...+ . ......|++.
T Consensus 140 ~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~--~~~~~lg~~~ 213 (296)
T PRK11189 140 IALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-N--IVEFYLGKIS 213 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-H--HHHHHccCCC
Confidence 5555556666666666555553 2222111111112233455566666654444321 2221111 1 1222233332
Q ss_pred HHHHHHHHHHHC---C--CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCh
Q 001632 944 EATRVYNESLAA---G--IIP-DLACYRTMLKGYMDHGYIEEGINLFEEVRESSESD 994 (1041)
Q Consensus 944 ~A~~~~~~~~~~---~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 994 (1041)
++ +.++.+.+. . +.| ....|..+...+.+.|++++|+..|+++.+..|+|
T Consensus 214 ~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 214 EE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred HH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 22 223332211 0 001 12345555555556666666666666655555433
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.3e-06 Score=86.38 Aligned_cols=224 Identities=11% Similarity=0.017 Sum_probs=166.5
Q ss_pred HhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHH
Q 001632 796 YGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEV 875 (1041)
Q Consensus 796 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 875 (1041)
.+..|++++...+-..+.... .-....|-.-...+...++++.|..+-++.++... -+...|..-.+.+...|++++|
T Consensus 276 L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A 353 (564)
T KOG1174|consen 276 LGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQA 353 (564)
T ss_pred HHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHH
Confidence 345677777766666665532 12222333333444567789999999999887622 1345555556788999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHH-HHHHhcC-CHHHHHHHHHHHH
Q 001632 876 EKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLL-SAFSKAG-LMAEATRVYNESL 953 (1041)
Q Consensus 876 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g-~~~~A~~~~~~~~ 953 (1041)
.-.|...+.. -+.+...|.-|+..|...|++.||..+-+...+. ++.+..+...++ ..+..-- --++|.+++++.+
T Consensus 354 ~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L 431 (564)
T KOG1174|consen 354 VIAFRTAQML-APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL 431 (564)
T ss_pred HHHHHHHHhc-chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh
Confidence 9999998874 3467889999999999999999999988887764 455666666664 4443332 3489999999988
Q ss_pred HCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCc
Q 001632 954 AAGIIPD-LACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRI 1026 (1041)
Q Consensus 954 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 1026 (1041)
. +.|+ ......+...|...|.++.++.++++..... +|-.....|++++...+.+++|++.+...+...-
T Consensus 432 ~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~-~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 432 K--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF-PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred c--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc-cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 7 5675 4566777888999999999999999988754 4556778899999999999999999988876554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.2e-07 Score=102.76 Aligned_cols=291 Identities=15% Similarity=0.164 Sum_probs=190.2
Q ss_pred HHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH------
Q 001632 670 IGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLT------ 743 (1041)
Q Consensus 670 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~------ 743 (1041)
...+...|++++|.+.++...................+.+.|+.++|..+|..++..+ |+...|...+..+.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 3456778999999999988666656666777888889999999999999999999874 66666655554443
Q ss_pred ccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHCCCCCCHH
Q 001632 744 NHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKL-DKALEMFNTARSLGLSLDEK 822 (1041)
Q Consensus 744 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~ 822 (1041)
.....+....+++++....+..+.+-.-.|.. .....+ ..+..+.......|+|+
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~---------------------~~g~~F~~~~~~yl~~~l~KgvPs--- 144 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDF---------------------LEGDEFKERLDEYLRPQLRKGVPS--- 144 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhccc---------------------CCHHHHHHHHHHHHHHHHhcCCch---
Confidence 11245666777777766654433322221111 111111 13344555566777643
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC----------CCCcc--cHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 001632 823 AYMNLVSFYGKAGKTHEASLLFSEMQEE----GI----------KPGLI--SYNIIINVYAAAGLYNEVEKLIQAMQRDG 886 (1041)
Q Consensus 823 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~----------~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 886 (1041)
+++.|-..|....+.+-..+++...... |. .|... ++.-+...|-..|++++|++++++.++.
T Consensus 145 lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h- 223 (517)
T PF12569_consen 145 LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH- 223 (517)
T ss_pred HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-
Confidence 5666666677666666666666665433 11 12222 3345567777888888888888888875
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHH-
Q 001632 887 FSPN-SFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIP--DLA- 962 (1041)
Q Consensus 887 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~- 962 (1041)
.|+ ...|..-...|-+.|++.+|.+.++...+.+ .-|...-+-.+..+.++|++++|++++......+..| |..
T Consensus 224 -tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~ 301 (517)
T PF12569_consen 224 -TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLND 301 (517)
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHH
Confidence 344 5567777788888888888888888888865 3444555556677788888888888888876554333 211
Q ss_pred ---HH--HHHHHHHHhcCChHHHHHHHHHHHh
Q 001632 963 ---CY--RTMLKGYMDHGYIEEGINLFEEVRE 989 (1041)
Q Consensus 963 ---~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 989 (1041)
.| .--+.+|.+.|++..|+..|..+.+
T Consensus 302 mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 302 MQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 2234577888888888888887665
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.1e-10 Score=81.98 Aligned_cols=47 Identities=26% Similarity=0.623 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 001632 217 DEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSL 263 (1041)
Q Consensus 217 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 263 (1041)
|..+||++|++|++.|++++|+++|++|.+.|+.||..||+.||++|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.9e-07 Score=87.25 Aligned_cols=319 Identities=16% Similarity=0.139 Sum_probs=235.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHcc
Q 001632 667 ASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISI-LVNTLTNH 745 (1041)
Q Consensus 667 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-l~~~~~~~ 745 (1041)
..+...+...|++..|..-|..+..+.|.+-.++..-...|...|+...|+.-+.+.++. +||-..-.. -...+.+.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhc
Confidence 456677778899999999999988777777777777788899999999999999998885 566543221 23457899
Q ss_pred CCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHH
Q 001632 746 GKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYM 825 (1041)
Q Consensus 746 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 825 (1041)
|.+++|..-|..+++..+..... ..+..+.-..++-..+...+..+...|+...|+++...+++-. +=|...|.
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~-----~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~ 193 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLV-----LEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQ 193 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchh-----HHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHH
Confidence 99999999999998876643221 1111111122233333444446778899999999999999864 35677788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH----HHH----
Q 001632 826 NLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTY----LSL---- 897 (1041)
Q Consensus 826 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~----~~l---- 897 (1041)
.-..+|...|++..|+.=++...+.. .-+..++--+...+...|+.+.++....+.++ +.||.... ..|
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHH
Confidence 88999999999999988887776642 22445566677778899999999999998887 56775432 111
Q ss_pred -----HHHHHhcCCHHHHHHHHHHHHHCCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 001632 898 -----VQAYTEAAKYSEAEETINSMQKQGIPPSC-----THVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD-LACYRT 966 (1041)
Q Consensus 898 -----~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 966 (1041)
+....+.+++.++++..+...+.+ |.. ..+..+..+|...|++.+|++.+.+.++ +.|| ..++.-
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~e--p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~d 346 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNE--PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCD 346 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcC--CcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHH
Confidence 122356678888888888888754 442 2345566778888999999999999998 5665 677777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCChHHHHHH
Q 001632 967 MLKGYMDHGYIEEGINLFEEVRESSESDKFIMSA 1000 (1041)
Q Consensus 967 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 1000 (1041)
=..+|.-...++.|+.-|+++.+..+.|..+..-
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG 380 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALELNESNTRAREG 380 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 7889999999999999999999988887655443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.9e-10 Score=81.45 Aligned_cols=49 Identities=22% Similarity=0.620 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 001632 251 PSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFV 299 (1041)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 299 (1041)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.4e-08 Score=88.97 Aligned_cols=204 Identities=15% Similarity=0.047 Sum_probs=148.9
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHH
Q 001632 787 ASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPG-LISYNIIINV 865 (1041)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~ 865 (1041)
..-+...+.|...|+...|..-++++++.+ +.+..+|..+...|.+.|..+.|.+.|++..+. .|+ -...|.....
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~F 112 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHH
Confidence 333444557888888888888888888876 455667888888888888888888888888775 343 3567777788
Q ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHH
Q 001632 866 YAAAGLYNEVEKLIQAMQRDG-FSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAE 944 (1041)
Q Consensus 866 ~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 944 (1041)
+|..|.+++|.+.|++....- ..--..+|..++.+..++|+.+.|...|++.++.+ +......-.+.....+.|++..
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchH
Confidence 888888888888888877641 22234567777777778888888888888888864 3344567777888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChH
Q 001632 945 ATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDK 995 (1041)
Q Consensus 945 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 995 (1041)
|.-+++.....+. +........++.--+.||...+-.+=.++....|...
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 8888888776543 6766666666777777887777777666766666554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.9e-07 Score=95.51 Aligned_cols=363 Identities=14% Similarity=0.077 Sum_probs=216.2
Q ss_pred HHHHHcCCHHHHHHHHHcC--CC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHH
Q 001632 640 CKFIRDGMRLTFKFLMKLG--YI-LDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDV 716 (1041)
Q Consensus 640 ~~~~~~g~~~~a~~~~~~~--~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 716 (1041)
+..+..|+++.|....... +. ++...|+.-..+|.+.|++++|.+=-.+.....|.-...|+-...++.-.|++++|
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 4556778888888743322 22 24556666777888888888887777776666666677888888888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH---HHHHHHhccCC---CCCChhhHHHHHHHHHhc----------
Q 001632 717 YLLYKEATAQGCALDAVAISILVNTLTNHGKHEQA---EIIIHNSFQDN---LDLDTVAYNTCIKAMLGA---------- 780 (1041)
Q Consensus 717 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~~~---~~~~~~~~~~li~~~~~~---------- 780 (1041)
+.-|.+-++.. ..+...++.+..++.......+. -.++..+.... .......|..++..+-+.
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 88888877753 12445556666655211000000 00000000000 000000011111100000
Q ss_pred CChhH--------------------------------------------------HHHHHHHHHHHhccCChHHHHHHHH
Q 001632 781 GKLHF--------------------------------------------------AASIYERMLVYGRGRKLDKALEMFN 810 (1041)
Q Consensus 781 g~~~~--------------------------------------------------A~~~~~~~~~~~~~~~~~~A~~~~~ 810 (1041)
.++.. |...-+......+..+++.|++-+.
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 00000 0000000015566778888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHH-------HHHHHHHcCCHHHHHHHHHHHH
Q 001632 811 TARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNI-------IINVYAAAGLYNEVEKLIQAMQ 883 (1041)
Q Consensus 811 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-------l~~~~~~~g~~~~A~~~~~~m~ 883 (1041)
..++.. -+..-++....+|...|++.++........+.|.. ...-|+. +.++|.+.++++.|+..|++..
T Consensus 249 ~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 249 KALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 888765 56666777888899999988888888777776542 2222333 3445666778888888888876
Q ss_pred HcCCCCCHHHHH-------------------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 001632 884 RDGFSPNSFTYL-------------------------SLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSK 938 (1041)
Q Consensus 884 ~~g~~~~~~~~~-------------------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 938 (1041)
.....||..+-. .-.+.+.+.|++..|...|.++++.+ |.|...|.+...+|.+
T Consensus 326 te~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~k 404 (539)
T KOG0548|consen 326 TEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLK 404 (539)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHH
Confidence 543444422111 11345566777888888888877765 5556677778888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhc
Q 001632 939 AGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYA 1008 (1041)
Q Consensus 939 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1008 (1041)
.|.+..|+.=++..++. -++....|.--..++.-..++++|.+.|++.++..|.+..+...+..++...
T Consensus 405 L~~~~~aL~Da~~~ieL-~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 405 LGEYPEALKDAKKCIEL-DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HhhHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 88888777777777764 2223344544455555666777888888877777777777777777776653
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-06 Score=96.69 Aligned_cols=312 Identities=12% Similarity=-0.032 Sum_probs=182.8
Q ss_pred CChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHH-HHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHH
Q 001632 695 PGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGC-ALDAVAI-SILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNT 772 (1041)
Q Consensus 695 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 772 (1041)
.....|..+...+...|+.+++...+.+..+... .++.... ......+...|++++|...++++.+..+... ..+..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~-~a~~~ 82 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL-LALKL 82 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-HHHHH
Confidence 3444555566666666666666555555544321 1122111 1122234556777777777777666544322 22221
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001632 773 CIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGI 852 (1041)
Q Consensus 773 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 852 (1041)
...+...|. ..+....+.+.+.. .....+........+...+...|++++|...+++..+...
T Consensus 83 -~~~~~~~~~---------------~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p 145 (355)
T cd05804 83 -HLGAFGLGD---------------FSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP 145 (355)
T ss_pred -hHHHHHhcc---------------cccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 112222221 12333334444433 1112233344556677888999999999999999998632
Q ss_pred CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhH
Q 001632 853 KPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGF-SPNS--FTYLSLVQAYTEAAKYSEAEETINSMQKQGI-PPSCTH 928 (1041)
Q Consensus 853 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~ 928 (1041)
.+...+..+..+|...|++++|+.++++...... .++. ..|..+...+...|++++|..+++++..... .+....
T Consensus 146 -~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~ 224 (355)
T cd05804 146 -DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALD 224 (355)
T ss_pred -CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHH
Confidence 2345677888899999999999999999887421 2333 2455778889999999999999999875321 122211
Q ss_pred H-H--HHHHHHHhcCCHHHHHHH---HHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC--------
Q 001632 929 V-N--HLLSAFSKAGLMAEATRV---YNESLAAGI-IPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSES-------- 993 (1041)
Q Consensus 929 ~-~--~l~~~~~~~g~~~~A~~~---~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------- 993 (1041)
. + .++..+...|....+.+. ......... ..........+.++...|+.++|...++.+......
T Consensus 225 ~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 304 (355)
T cd05804 225 LLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPA 304 (355)
T ss_pred HhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhH
Confidence 1 1 334444555543333332 121111100 111222235667788899999999999997663322
Q ss_pred -hHHHHHHHHHHHHhcCChhHHHHHHHHhhccC
Q 001632 994 -DKFIMSAAVHLYRYAGKEHEANDILDSMNSVR 1025 (1041)
Q Consensus 994 -~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 1025 (1041)
...+....+.++...|++++|.+++......+
T Consensus 305 ~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 305 RDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 23445556777889999999999999986554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.9e-07 Score=98.89 Aligned_cols=290 Identities=15% Similarity=0.106 Sum_probs=153.6
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHhc-----
Q 001632 263 LHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYS-QLISLSIKH----- 336 (1041)
Q Consensus 263 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~----- 336 (1041)
+...|++++|++.++.-... +......+......+.+.|+.++|..++..+++.+ |+...|. .+..++...
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccccc
Confidence 34455555555555443222 22223344455555555666666666666666553 3333332 233332111
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001632 337 GKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENY-SKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKT 415 (1041)
Q Consensus 337 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 415 (1041)
.+.+....+|+++...- |.......+.-.+.....+ ..+..++..+...|++ .+++.|-..|....+..-..++
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 13444555555554432 2222222221111111122 2244444455555543 2344444444444444444444
Q ss_pred HHHHHHc----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 001632 416 FAETEQL----G----------LLSDE--KTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDL 479 (1041)
Q Consensus 416 ~~~~~~~----~----------~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 479 (1041)
+...... + -.|.. .++.-+.+.|-..|++++|++.++...+.. +..+..|..-.+.+-+.|++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCH
Confidence 4443321 0 12232 234555666777777777777777776653 22355666677777777777
Q ss_pred hHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--------HHHHHHHHhcCChhhH
Q 001632 480 GSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELY--------RSVMKIYCKEGMVTDA 551 (1041)
Q Consensus 480 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--------~~ll~~~~~~g~~~~A 551 (1041)
.+|.+.++........|...-+..+..+.+.|++++|.+++....+.+..|-...+ .-...+|.+.|++..|
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 77777777777777666666666777777777777777777777665432222111 2345678888999999
Q ss_pred HHHHHHHhhC
Q 001632 552 EQFVEEMGKN 561 (1041)
Q Consensus 552 ~~~~~~m~~~ 561 (1041)
+..|..+.++
T Consensus 325 Lk~~~~v~k~ 334 (517)
T PF12569_consen 325 LKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHH
Confidence 8888777655
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.1e-07 Score=97.79 Aligned_cols=216 Identities=15% Similarity=0.088 Sum_probs=156.8
Q ss_pred ChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHHHcCCHHHHH
Q 001632 801 KLDKALEMFNTARSLG-LSL--DEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKP-GLISYNIIINVYAAAGLYNEVE 876 (1041)
Q Consensus 801 ~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 876 (1041)
..+.++.-+.+++... ..| ....|..+...|...|+.++|...|++..+. .| +...|+.+...|...|++++|+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4455555555565432 122 2356888888999999999999999999986 44 4578999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001632 877 KLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAG 956 (1041)
Q Consensus 877 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 956 (1041)
..|++..+. -+.+...+..++.++...|++++|.+.++...+.+ |+..........+...++.++|++.+++....
T Consensus 119 ~~~~~Al~l-~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 119 EAFDSVLEL-DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 999999884 23456778888999999999999999999999854 55432222223345678899999999876643
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-------hccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCc
Q 001632 957 IIPDLACYRTMLKGYMDHGYIEEGINLFEEVR-------ESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRI 1026 (1041)
Q Consensus 957 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 1026 (1041)
..|+...+ . ......|+..++ ..++.+. +..+..+.++..++.+|...|++++|...+++..+...
T Consensus 195 ~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33443222 2 233345555444 3444444 23344567899999999999999999999999988775
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2e-06 Score=82.73 Aligned_cols=94 Identities=12% Similarity=0.043 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHh
Q 001632 466 YIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRS-VMKIYCK 544 (1041)
Q Consensus 466 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-ll~~~~~ 544 (1041)
+.+++..+.+..++.+|++++..-.+..+.+....+.|..+|....++..|-.+|+++... -|...-|.. -...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 4556666677777888888888777777667777788888888888888888888888764 334433332 2456677
Q ss_pred cCChhhHHHHHHHHhhC
Q 001632 545 EGMVTDAEQFVEEMGKN 561 (1041)
Q Consensus 545 ~g~~~~A~~~~~~m~~~ 561 (1041)
.+.+.+|+.+...|.+.
T Consensus 91 A~i~ADALrV~~~~~D~ 107 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN 107 (459)
T ss_pred hcccHHHHHHHHHhcCC
Confidence 88888899888887664
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.4e-05 Score=76.11 Aligned_cols=212 Identities=12% Similarity=0.092 Sum_probs=139.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 001632 665 VTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTN 744 (1041)
Q Consensus 665 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 744 (1041)
.....+..+...|+...|+.....+....+-|...+..-..+|...|.+..|+.-++...+.. .-+..++.-+-..+..
T Consensus 157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~ 235 (504)
T KOG0624|consen 157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYT 235 (504)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHh
Confidence 445556667778999999999999888888999999999999999999999988887776542 1234455555667778
Q ss_pred cCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHH
Q 001632 745 HGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAY 824 (1041)
Q Consensus 745 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 824 (1041)
.|+...++..++++++-++.-. ..|. . |+ ++.+..+.++.|
T Consensus 236 vgd~~~sL~~iRECLKldpdHK-~Cf~-~----------------YK---------klkKv~K~les~------------ 276 (504)
T KOG0624|consen 236 VGDAENSLKEIRECLKLDPDHK-LCFP-F----------------YK---------KLKKVVKSLESA------------ 276 (504)
T ss_pred hhhHHHHHHHHHHHHccCcchh-hHHH-H----------------HH---------HHHHHHHHHHHH------------
Confidence 8999999888888887654311 1111 0 00 011111111111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCccc---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001632 825 MNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLIS---YNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAY 901 (1041)
Q Consensus 825 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 901 (1041)
......++|.++.+-.+...+.......+. +..+..++...|++.+|++.-.+.++. .+.|..++.--..+|
T Consensus 277 ----e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~-d~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 277 ----EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI-DPDDVQVLCDRAEAY 351 (504)
T ss_pred ----HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc-CchHHHHHHHHHHHH
Confidence 123345667777777777666522211222 334556667777888888888877763 233466777777788
Q ss_pred HhcCCHHHHHHHHHHHHHCC
Q 001632 902 TEAAKYSEAEETINSMQKQG 921 (1041)
Q Consensus 902 ~~~g~~~~A~~~~~~~~~~~ 921 (1041)
.-...++.|+.-|+...+.+
T Consensus 352 l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 352 LGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred hhhHHHHHHHHHHHHHHhcC
Confidence 87788888888888888754
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.3e-07 Score=93.56 Aligned_cols=235 Identities=10% Similarity=0.046 Sum_probs=181.0
Q ss_pred CChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCcccH
Q 001632 781 GKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAG-KTHEASLLFSEMQEEGIKPGLISY 859 (1041)
Q Consensus 781 g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~ 859 (1041)
+++.+|...|..+ +.+.+..++|+....+++... +-+..+|+....++.+.| ++++++..++++.+...+ +...|
T Consensus 34 ~~~~~a~~~~ra~--l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW 109 (320)
T PLN02789 34 PEFREAMDYFRAV--YASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIW 109 (320)
T ss_pred HHHHHHHHHHHHH--HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHh
Confidence 4556666666664 467788999999999998865 345567777777777777 589999999999987433 44567
Q ss_pred HHHHHHHHHcCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 001632 860 NIIINVYAAAGLY--NEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFS 937 (1041)
Q Consensus 860 ~~l~~~~~~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 937 (1041)
+.-...+.+.|+. ++++.+++++.+. -+-|...|.....++.+.|+++++++.++++++.+ +.+..+|+....++.
T Consensus 110 ~~R~~~l~~l~~~~~~~el~~~~kal~~-dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~ 187 (320)
T PLN02789 110 HHRRWLAEKLGPDAANKELEFTRKILSL-DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVIT 187 (320)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHH
Confidence 7666666666663 6789999899875 35678889999999999999999999999999976 566678888887776
Q ss_pred hc---CC----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 001632 938 KA---GL----MAEATRVYNESLAAGIIPDLACYRTMLKGYMDH----GYIEEGINLFEEVRESSESDKFIMSAAVHLYR 1006 (1041)
Q Consensus 938 ~~---g~----~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 1006 (1041)
+. |. .++++++..++++. .+-|...|+.+...+... ++..+|...+.++....+.++.++..|+++|+
T Consensus 188 ~~~~l~~~~~~~e~el~y~~~aI~~-~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 188 RSPLLGGLEAMRDSELKYTIDAILA-NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLC 266 (320)
T ss_pred hccccccccccHHHHHHHHHHHHHh-CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 65 22 35788888888874 344677888888888773 45577999999988878888999999999998
Q ss_pred hcC------------------ChhHHHHHHHHhh
Q 001632 1007 YAG------------------KEHEANDILDSMN 1022 (1041)
Q Consensus 1007 ~~g------------------~~~eA~~~~~~~~ 1022 (1041)
... ..++|.++++.+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 267 EGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 732 3467888888883
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.1e-08 Score=103.20 Aligned_cols=151 Identities=19% Similarity=0.176 Sum_probs=95.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHH--hcC-
Q 001632 864 NVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFS--KAG- 940 (1041)
Q Consensus 864 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g- 940 (1041)
..+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...|+.++. ..|
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCc
Confidence 4455667777777766532 345555566677777777777777777777632 33 22333333322 233
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCh-hHHHHHH
Q 001632 941 -LMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKE-HEANDIL 1018 (1041)
Q Consensus 941 -~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~eA~~~~ 1018 (1041)
.+.+|..+|+++.+. ..+++.+.+.++.+++..|++++|...++++.+..|.|+.++..++.+....|+. +.+.+++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 577777777776554 5567777777777777777777777777777777777777777777777777777 5566777
Q ss_pred HHhhcc
Q 001632 1019 DSMNSV 1024 (1041)
Q Consensus 1019 ~~~~~~ 1024 (1041)
.++...
T Consensus 260 ~qL~~~ 265 (290)
T PF04733_consen 260 SQLKQS 265 (290)
T ss_dssp HHCHHH
T ss_pred HHHHHh
Confidence 777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.4e-06 Score=79.90 Aligned_cols=195 Identities=17% Similarity=0.147 Sum_probs=101.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHH-HHHHH
Q 001632 256 FNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQL-ISLSI 334 (1041)
Q Consensus 256 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~~~~ 334 (1041)
+.+.+..+.+..+++.|++++..-.+.. +.+....+.|...|-...++..|...++++-.. .|...-|... ...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4444445555555666666555544432 224555666666666666666666666666554 4444444332 44555
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001632 335 KHGKSDEALSLYKDMRSRGLIPSNYTCASLLS--LYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDA 412 (1041)
Q Consensus 335 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 412 (1041)
+.+.+.+|+.+...|.+. |+...-..-+. .....+++..+..+.++....| +..+.+.......+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 666666666666666432 11111111111 1234556666666666554322 333344444444566667777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 001632 413 QKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMW 460 (1041)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 460 (1041)
.+-|+...+-+--.....||.-+ +..+.++++.|++...++.++|++
T Consensus 164 vqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 66666666543333444555333 333456666666666666666654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.8e-07 Score=85.52 Aligned_cols=159 Identities=15% Similarity=0.143 Sum_probs=122.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc
Q 001632 860 NIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKA 939 (1041)
Q Consensus 860 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 939 (1041)
..+...+...|+-+....+....... .+.|......++....+.|++.+|+..+++..... ++|...|+.++-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 55666677778877777777665443 34455566667778888888888888888888764 67778888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHH
Q 001632 940 GLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILD 1019 (1041)
Q Consensus 940 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~ 1019 (1041)
|+.++|..-|.+.++. .+.++..++.|...|.-.|+++.|..++......-+.|+.+...++-+....|++++|+.+..
T Consensus 148 Gr~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 8888888888888874 333677778888888888888888888888887777788888888888888888888887765
Q ss_pred Hh
Q 001632 1020 SM 1021 (1041)
Q Consensus 1020 ~~ 1021 (1041)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 53
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.79 E-value=0.00042 Score=73.19 Aligned_cols=210 Identities=15% Similarity=0.121 Sum_probs=150.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHc-CCCCCcccHHHHHHHHHHcCCHHHHHH
Q 001632 802 LDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGK---THEASLLFSEMQEE-GIKPGLISYNIIINVYAAAGLYNEVEK 877 (1041)
Q Consensus 802 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~ 877 (1041)
.+++..+++...+.-..-+..+|.++.+.--..-+ .+.....+++.... .++|+ .+|..+++.-.+..-+..|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHH
Confidence 45667777777665434455555555443222222 56667777777664 33444 457788888888888999999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001632 878 LIQAMQRDGFSP-NSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAG 956 (1041)
Q Consensus 878 ~~~~m~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 956 (1041)
+|.+..+.+..+ +.+.+.+++.-|+ .++.+-|..+|+--+++ +..+..-....++.+...|+-..|..+|++.+..+
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 999999987777 7788888888555 67889999999987775 34555566788999999999999999999999887
Q ss_pred CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChH----HHHHHHHHHHHhcCChhHH
Q 001632 957 IIPD--LACYRTMLKGYMDHGYIEEGINLFEEVRESSESDK----FIMSAAVHLYRYAGKEHEA 1014 (1041)
Q Consensus 957 ~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~eA 1014 (1041)
+++| ...|..++.--..-|+...++++-++.....|.+. .....+++-|.-.+.+..-
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~ 529 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCS 529 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccccc
Confidence 7776 46899999888889999999999888666565221 1233345555555544433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.0011 Score=74.78 Aligned_cols=165 Identities=13% Similarity=0.109 Sum_probs=101.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 770 YNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQE 849 (1041)
Q Consensus 770 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 849 (1041)
.+.+++.+.+.++.. .+-+|+-+++...... +.|..+--.+|..|+--|-+..|.++|..+--
T Consensus 439 v~~Lid~~rktnd~~----------------~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdI 501 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLT----------------DLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDI 501 (932)
T ss_pred HHHHHHHHHhcCcHH----------------HHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcch
Confidence 455666665555543 2234445555555543 45666777789999999999999999998877
Q ss_pred cCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCh
Q 001632 850 EGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQ---GIPPSC 926 (1041)
Q Consensus 850 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~ 926 (1041)
+.+.-|...|. +.+.+...|++..+...+....+- +..+..----+|..-.+.|.+.+..++..-=.+. .....+
T Consensus 502 K~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~ 579 (932)
T KOG2053|consen 502 KNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWAC 579 (932)
T ss_pred HHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 66776766654 345556778888887777776552 1112111222233345677887776654332221 111222
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001632 927 THVNHLLSAFSKAGLMAEATRVYNESL 953 (1041)
Q Consensus 927 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 953 (1041)
.+-+..++.++..++.++-...++.|.
T Consensus 580 ~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 580 RVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 344667778888888888888888775
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.1e-05 Score=83.36 Aligned_cols=269 Identities=8% Similarity=-0.017 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001632 184 VAYTILLRLYGQVGKIKLAEQTFLEMLEAGC-EPDEIA-CGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLS 261 (1041)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 261 (1041)
..|..+...+...|+.+.+.+.+....+... ..+... .......+...|++++|..++++..+.. +.+...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 3455555666666777776666666544321 223221 1222334566778888888888777653 334444442 22
Q ss_pred HHHh----cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 001632 262 SLHK----KSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHG 337 (1041)
Q Consensus 262 ~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 337 (1041)
.+.. .+....+.+.++. .....+........+...+...|++++|.+.+++..+.. +.+...+..+..++...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 2222 3444444444443 111122233455566677788888888888888888774 334556777778888888
Q ss_pred ChHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCCHH
Q 001632 338 KSDEALSLYKDMRSRGL-IPSN--YTCASLLSLYYKNENYSKALSLFSEMEKFKV-AADEVIY-G--LLIRIYGKLGLYE 410 (1041)
Q Consensus 338 ~~~~A~~~~~~m~~~~~-~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~~~ 410 (1041)
++++|...+++...... .|+. ..|..+...+...|++++|..++++...... .+..... + .++..+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 88888888888765432 1222 2345677778888888888888888754322 1111111 1 2223333334322
Q ss_pred HHHHH--H-HHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001632 411 DAQKT--F-AETEQLGL-LSDEKTYLAMAQVHLTSRNVEKALDVIELMKS 456 (1041)
Q Consensus 411 ~A~~~--~-~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 456 (1041)
.+.+. . ........ ............++...|+.+.|..+++.+..
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 22222 1 11111100 01111112455566677777777777777654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.5e-07 Score=95.97 Aligned_cols=219 Identities=16% Similarity=0.134 Sum_probs=172.4
Q ss_pred HHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHHHcCCHH
Q 001632 795 VYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPG-LISYNIIINVYAAAGLYN 873 (1041)
Q Consensus 795 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~ 873 (1041)
.+.+.|++.+|.-.|+.....+ |-+...|--|....+..++-..|+..+++.++. .|+ ......|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHH
Confidence 3456678888888888888876 556778999998899999999999999999986 454 466777888899999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH-----------HHHhcCCHHHHHHHHHHHH-HCCCCCChhHHHHHHHHHHhcCC
Q 001632 874 EVEKLIQAMQRDGFSPNSFTYLSLVQ-----------AYTEAAKYSEAEETINSMQ-KQGIPPSCTHVNHLLSAFSKAGL 941 (1041)
Q Consensus 874 ~A~~~~~~m~~~g~~~~~~~~~~l~~-----------~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~ 941 (1041)
+|++.|+..+.... . |..+.. .+..........++|-++. +.+..+|+.+...|+-.|...|+
T Consensus 371 ~Al~~L~~Wi~~~p--~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKP--K---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCc--c---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 99999998876421 1 111110 1122223344555555554 44445788899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHH
Q 001632 942 MAEATRVYNESLAAGIIP-DLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDS 1020 (1041)
Q Consensus 942 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 1020 (1041)
+++|++-|+.++.. +| |...||-|...+....+.++|+..|.++.+.-|.-..+.+.|+-.|...|-++||.+.+-.
T Consensus 446 fdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 446 FDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 99999999999984 55 6789999999999999999999999999998888888999999999999999999988876
Q ss_pred hhc
Q 001632 1021 MNS 1023 (1041)
Q Consensus 1021 ~~~ 1023 (1041)
.+.
T Consensus 524 AL~ 526 (579)
T KOG1125|consen 524 ALS 526 (579)
T ss_pred HHH
Confidence 544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.6e-05 Score=94.65 Aligned_cols=340 Identities=12% Similarity=0.022 Sum_probs=195.5
Q ss_pred HHHhccCCHHHHHHHHHHhhcC-CCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC------CCH--HHHHHHHHH
Q 001632 671 GSYGKHQKLKEAQDVFKAATVS-CKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCA------LDA--VAISILVNT 741 (1041)
Q Consensus 671 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~------~~~--~~~~~l~~~ 741 (1041)
..+...|+...+...+..+... ...+..........+...|++++|...+......--. +.. .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 3444567777777777665311 1122223344555667788999998888877543110 111 112222334
Q ss_pred HHccCCHHHHHHHHHHhccCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCC
Q 001632 742 LTNHGKHEQAEIIIHNSFQDNLDLDT----VAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGL 817 (1041)
Q Consensus 742 ~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 817 (1041)
+...|++++|...++.........+. ...+.+...+...|+++.|...+++.. .... ..|.
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al------------~~~~---~~g~ 526 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTE------------QMAR---QHDV 526 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------HHHh---hhcc
Confidence 56788999999998887664222221 233444444455555555555554432 1111 1111
Q ss_pred C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC
Q 001632 818 S-LDEKAYMNLVSFYGKAGKTHEASLLFSEMQEE----GIKP---GLISYNIIINVYAAAGLYNEVEKLIQAMQRD--GF 887 (1041)
Q Consensus 818 ~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~ 887 (1041)
. ....++..+...+...|++++|...+++..+. |... ....+..+...+...|++++|...+.+.... ..
T Consensus 527 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 606 (903)
T PRK04841 527 YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY 606 (903)
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc
Confidence 0 11234556677778889999998888776552 2111 1122344556677779999998888876552 11
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001632 888 SPN--SFTYLSLVQAYTEAAKYSEAEETINSMQKQGI-PPSCTHV-----NHLLSAFSKAGLMAEATRVYNESLAAGIIP 959 (1041)
Q Consensus 888 ~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 959 (1041)
.+. ...+..+..++...|++++|...++.+..... ......+ ...+..+...|+.+.|.+.+..........
T Consensus 607 ~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~ 686 (903)
T PRK04841 607 QPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFAN 686 (903)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCcc
Confidence 121 23344456677788999999888888765210 1111111 112244556788888888877754321111
Q ss_pred CH---HHHHHHHHHHHhcCChHHHHHHHHHHHhcc-----C-ChHHHHHHHHHHHHhcCChhHHHHHHHHhhccC
Q 001632 960 DL---ACYRTMLKGYMDHGYIEEGINLFEEVRESS-----E-SDKFIMSAAVHLYRYAGKEHEANDILDSMNSVR 1025 (1041)
Q Consensus 960 ~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~-~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 1025 (1041)
.. ..+..+..++...|++++|...++++.... + ....++..++.+|...|+.++|...+.+..+..
T Consensus 687 ~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 687 NHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 11 113456667788889999998888866531 1 123456677888888999999988888776643
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-06 Score=89.64 Aligned_cols=184 Identities=16% Similarity=0.119 Sum_probs=124.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc----ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--
Q 001632 818 SLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGL----ISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNS-- 891 (1041)
Q Consensus 818 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-- 891 (1041)
+.....+..+...|.+.|++++|...|+++.+. .|+. ..+..+..+|...|++++|+..++++.+.. +.+.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~ 106 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDA 106 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCch
Confidence 345566777778888888888888888888775 3432 355667788888888888888888887742 2111
Q ss_pred -HHHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 001632 892 -FTYLSLVQAYTEA--------AKYSEAEETINSMQKQGIPPSCT-HVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDL 961 (1041)
Q Consensus 892 -~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 961 (1041)
.++..+..++... |++++|.+.++.+.+.. |+.. .+..+..... .... ..
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~-------~~------- 166 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNR-------LA------- 166 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHH-------HH-------
Confidence 2455555566554 67788888888888743 4432 2222211110 0000 00
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhccCC---hHHHHHHHHHHHHhcCChhHHHHHHHHhhcc
Q 001632 962 ACYRTMLKGYMDHGYIEEGINLFEEVRESSES---DKFIMSAAVHLYRYAGKEHEANDILDSMNSV 1024 (1041)
Q Consensus 962 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 1024 (1041)
.....+...|.+.|++++|+..++++.+..|. .+..+..++.+|.+.|++++|..+++.+...
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 01124566788999999999999998887554 3578889999999999999999998887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-06 Score=84.93 Aligned_cols=124 Identities=13% Similarity=0.100 Sum_probs=67.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHH-HhcCC--HHHH
Q 001632 869 AGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAF-SKAGL--MAEA 945 (1041)
Q Consensus 869 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A 945 (1041)
.++.++++..++...+. -+.|...|..|...|...|++++|...|++..+.+ +.+...+..++.++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 44455555555555543 34455556666666666666666666666666543 33444555555543 44454 3566
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChH
Q 001632 946 TRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDK 995 (1041)
Q Consensus 946 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 995 (1041)
.+++++.++. .+.+...+..+...+.+.|++++|+..++++.+..|++.
T Consensus 130 ~~~l~~al~~-dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 130 REMIDKALAL-DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHh-CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 6666666553 122445555555556666666666666666655555543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-06 Score=89.11 Aligned_cols=246 Identities=13% Similarity=0.117 Sum_probs=101.2
Q ss_pred ccCCHHHHHHHHHHhhc-CCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 001632 675 KHQKLKEAQDVFKAATV-SCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEI 753 (1041)
Q Consensus 675 ~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 753 (1041)
-.|.+..+..-.+ +.. ....+......+.+++...|+++.++ .++... ..|....+..+...+...++-+.++.
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchHHHHH
Confidence 3566666664444 221 11122334445666777777765433 333322 24555555444443333334444444
Q ss_pred HHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001632 754 IIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGK 833 (1041)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 833 (1041)
-+.+...........++.. +.+. ++...|++++|++++... .+.......+..|.+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~-~~A~-----------------i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~ 143 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQL-LAAT-----------------ILFHEGDYEEALKLLHKG------GSLELLALAVQILLK 143 (290)
T ss_dssp HHHHCCCTS---CHHHHHH-HHHH-----------------HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccHHHHH-HHHH-----------------HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHH
Confidence 4444433332211111111 1111 233334444444433221 233344444555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 001632 834 AGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAA----AGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSE 909 (1041)
Q Consensus 834 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~ 909 (1041)
.++++.|.+.++.|.+. ..| .+...++.++.. .+.+.+|.-+|+++.+. +.++..+.+.+..++...|++++
T Consensus 144 ~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~e 219 (290)
T PF04733_consen 144 MNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEE 219 (290)
T ss_dssp TT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHH
T ss_pred cCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHH
Confidence 55555555555555543 112 222223332221 12355555555554433 34444555555555555555555
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 001632 910 AEETINSMQKQGIPPSCTHVNHLLSAFSKAGLM-AEATRVYNESLA 954 (1041)
Q Consensus 910 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 954 (1041)
|++++++..+.+ +.+..+..+++-+....|+. +.+.+++.++..
T Consensus 220 Ae~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 220 AEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 555555554432 23333444444444444544 444444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-06 Score=80.36 Aligned_cols=125 Identities=12% Similarity=-0.011 Sum_probs=91.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001632 877 KLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAG 956 (1041)
Q Consensus 877 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 956 (1041)
.+|++.++ ..|+. +..+..++...|++++|...|+.++..+ +.+...|..++.++...|++++|+..|+++++.
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l- 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML- 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 45555555 23443 4456677788888888888888888754 456667788888888888888888888888874
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 001632 957 IIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRY 1007 (1041)
Q Consensus 957 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1007 (1041)
.+.+...+..+..++...|++++|+..|+++.+..|.++..+...+.+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 334677777788888888888888888888888888887777666665543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.8e-05 Score=92.49 Aligned_cols=335 Identities=12% Similarity=0.066 Sum_probs=184.0
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC--C----CCC--HHHHHHHHHHH
Q 001632 227 TYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKG--V----APT--DFTYTLVISSF 298 (1041)
Q Consensus 227 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~----~~~--~~~~~~li~~~ 298 (1041)
.+...|++..+..+++.+.......+..........+...|+++++..++.+....- . .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 344566666666666554211111122222334444556677777777776654320 0 111 11222333445
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHH
Q 001632 299 VKGSLLEEALKTFNEMKSTGFAPEE----VTYSQLISLSIKHGKSDEALSLYKDMRSR----GL-IPSNYTCASLLSLYY 369 (1041)
Q Consensus 299 ~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~li~~~~ 369 (1041)
...|++++|...+++..+.-...+. ..++.+...+...|++++|...+++.... |. .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 5677888888777776653111111 23445555666778888887777776432 11 111234455566677
Q ss_pred hcCCHHHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHH
Q 001632 370 KNENYSKALSLFSEMEK----FKVA--A-DEVIYGLLIRIYGKLGLYEDAQKTFAETEQLG--LLS--DEKTYLAMAQVH 438 (1041)
Q Consensus 370 ~~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~li~~~ 438 (1041)
..|+++.|...+.+... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 77888887777766543 2211 1 22334455556666788888877777654421 111 123344455667
Q ss_pred HhcCCHHHHHHHHHHHHhC--CCCCCHH--H-H-HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCh----hHHHHHHHHHH
Q 001632 439 LTSRNVEKALDVIELMKSR--NMWLSRF--A-Y-IVMLQCYVMKEDLGSAEGTFQTLAKTGLPDA----GSCNDMLNLYI 508 (1041)
Q Consensus 439 ~~~~~~~~A~~~~~~~~~~--~~~~~~~--~-~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~ 508 (1041)
...|+++.|.+.++..... ....... . . ...+..+...|+.+.|...+........... ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 7778888887777766432 1111110 1 1 1122344456777777777666543222111 11345666777
Q ss_pred hcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 001632 509 KLDLTEKAKGFIAHIRKD----QVDFD-EELYRSVMKIYCKEGMVTDAEQFVEEMGKN 561 (1041)
Q Consensus 509 ~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 561 (1041)
..|+.++|...++..... |...+ ..++..+..++.+.|+.++|...+.+..+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888776543 22222 235566667788888888888888888776
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.2e-06 Score=88.81 Aligned_cols=246 Identities=13% Similarity=0.157 Sum_probs=174.2
Q ss_pred HHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCH
Q 001632 742 LTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDE 821 (1041)
Q Consensus 742 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 821 (1041)
+.+.|.+.+|.-.|+..+++.+. +.-.|..|... ....++-..|+..+.++.+.+ +.|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~-------------------qaENE~E~~ai~AL~rcl~Ld-P~Nl 353 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGIT-------------------QAENENEQNAISALRRCLELD-PTNL 353 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhH-------------------hhhccchHHHHHHHHHHHhcC-CccH
Confidence 34555666666666666655543 34445555543 344556667777777777776 5678
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHH-----------HHHHHcCCHHHHHHHHHHHH-HcCCCC
Q 001632 822 KAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIII-----------NVYAAAGLYNEVEKLIQAMQ-RDGFSP 889 (1041)
Q Consensus 822 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~-----------~~~~~~g~~~~A~~~~~~m~-~~g~~~ 889 (1041)
.+..+|.-.|...|.-.+|...|+..+...+ . |..+. ........+....++|-++. ..+..+
T Consensus 354 eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p--~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~ 428 (579)
T KOG1125|consen 354 EALMALAVSYTNEGLQNQALKMLDKWIRNKP--K---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKI 428 (579)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc--c---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCC
Confidence 8999999999999999999999999876521 1 11010 11122223444555555554 445457
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 001632 890 NSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDL-ACYRTML 968 (1041)
Q Consensus 890 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~ 968 (1041)
|......|.-.|.-.|++++|...|+.++..+ |.|...||-|+..++-..+.++|+..|+++++ +.|.- ..+-.|.
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlg 505 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLG 505 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhh
Confidence 88888888888999999999999999999854 45566899999999999999999999999998 67863 3556677
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCC----------hHHHHHHHHHHHHhcCChhHHHH
Q 001632 969 KGYMDHGYIEEGINLFEEVRESSES----------DKFIMSAAVHLYRYAGKEHEAND 1016 (1041)
Q Consensus 969 ~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~eA~~ 1016 (1041)
-.|+..|.|++|..+|-.++...+. +-.++..|=.++...++.|-+.+
T Consensus 506 IS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 506 ISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 8899999999999999887663322 12567777777777777664433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.0026 Score=71.85 Aligned_cols=519 Identities=14% Similarity=0.114 Sum_probs=273.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHH
Q 001632 439 LTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQC--YVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKA 516 (1041)
Q Consensus 439 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 516 (1041)
...+++.+|+.....+.++. |+. .|..++.+ ..+.|..++|..+++.....+..|..+...+..+|...++.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 34566667776666666552 332 23333333 34667777777777766665556777777777778888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCCCHHHHHHHHHHHhccCCCcccccchhhhhhh
Q 001632 517 KGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCKILHGGCTENAEFGDKFVASNQ 596 (1041)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 596 (1041)
..+|++..+. .|+......+..+|.+.+++..-.+.--+|-+ +++-....+-.+++........+.+....
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~------ 167 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDP------ 167 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccc------
Confidence 8888877654 45677777777777777766543333333322 23444555566666555444432222110
Q ss_pred hhhhHHHHhhhhccCcccHHHHHHHHHHHhhcCCchhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 001632 597 LDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKH 676 (1041)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 676 (1041)
.- ..-|...++++++. .|.-.+..-..-....+...
T Consensus 168 i~----------------l~LA~~m~~~~l~~----------------------------~gk~~s~aE~~Lyl~iL~~~ 203 (932)
T KOG2053|consen 168 IL----------------LALAEKMVQKLLEK----------------------------KGKIESEAEIILYLLILELQ 203 (932)
T ss_pred hh----------------HHHHHHHHHHHhcc----------------------------CCccchHHHHHHHHHHHHhc
Confidence 00 01122222222221 11111111122223445567
Q ss_pred CCHHHHHHHHHH--hhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----------
Q 001632 677 QKLKEAQDVFKA--ATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLT----------- 743 (1041)
Q Consensus 677 ~~~~~A~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~----------- 743 (1041)
|+.++|.+++.. .....+.+...-+.-++.+...+++.+..++-.++...| +|. |...+...+
T Consensus 204 ~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~--~Dd--y~~~~~sv~klLe~~~~~~a 279 (932)
T KOG2053|consen 204 GKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG--NDD--YKIYTDSVFKLLELLNKEPA 279 (932)
T ss_pred ccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC--Ccc--hHHHHHHHHHHHHhcccccc
Confidence 788888888844 333334555666777888888999999999988888876 332 222222111
Q ss_pred -----ccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH-----------HHhccCChHHHHH
Q 001632 744 -----NHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERML-----------VYGRGRKLDKALE 807 (1041)
Q Consensus 744 -----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~~A~~ 807 (1041)
..+..+...+..++.+.....-.-..+--+..-+-.-|+.+++...|-+-. .|.-.=+.+.-..
T Consensus 280 ~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~ 359 (932)
T KOG2053|consen 280 EAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKS 359 (932)
T ss_pred hhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHH
Confidence 111222222222222222111111111112222224466666555443311 3333334444444
Q ss_pred HHHHHHHCCCCCCHH----H---HHHHHHHHHhcCC-----HHHHHHHHHHHH---HcC------CCCCcc---------
Q 001632 808 MFNTARSLGLSLDEK----A---YMNLVSFYGKAGK-----THEASLLFSEMQ---EEG------IKPGLI--------- 857 (1041)
Q Consensus 808 ~~~~~~~~~~~~~~~----~---~~~l~~~~~~~g~-----~~~A~~~~~~m~---~~g------~~p~~~--------- 857 (1041)
++....... ++.. . +...+....-.|. -+.-..++++.. ++| .-|...
T Consensus 360 l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llL 437 (932)
T KOG2053|consen 360 LMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLL 437 (932)
T ss_pred HHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHH
Confidence 544443321 1111 0 1111111111221 122222232222 122 223322
Q ss_pred cHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 001632 858 SYNIIINVYAAAGLYN---EVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLS 934 (1041)
Q Consensus 858 ~~~~l~~~~~~~g~~~---~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 934 (1041)
+.+.|++.|.+.++.. +|+-+++..... -+-|..+-..||..|+-.|-+..|.++|+.+.-+.+..|...|- +..
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~ 515 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFR 515 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHH
Confidence 2367788888888754 566666665553 23455556678889999999999999999988776766655442 334
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH---HHhccCCh-HHHHHHHHHHHHhcCC
Q 001632 935 AFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEE---VRESSESD-KFIMSAAVHLYRYAGK 1010 (1041)
Q Consensus 935 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~-~~~~~~l~~~~~~~g~ 1010 (1041)
.+...|++..+...+...+.- +..+..----++..-++.|.|.+-.++..- +....... ..+-....+.++..++
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~ 594 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADR 594 (932)
T ss_pred HHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 556678888888888877652 111111111123333477777766665432 22222111 2344556778888999
Q ss_pred hhHHHHHHHHhh
Q 001632 1011 EHEANDILDSMN 1022 (1041)
Q Consensus 1011 ~~eA~~~~~~~~ 1022 (1041)
.++-...+..|.
T Consensus 595 ~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 595 GTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHhccc
Confidence 999999988887
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.7e-06 Score=85.14 Aligned_cols=187 Identities=13% Similarity=0.103 Sum_probs=133.3
Q ss_pred hHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcc---
Q 001632 784 HFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDE---KAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLI--- 857 (1041)
Q Consensus 784 ~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--- 857 (1041)
..+...+.....+...|++++|...|+++.... +.+. ..+..+..+|.+.|++++|...++++.+. .|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~ 107 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDAD 107 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchH
Confidence 455667777778899999999999999998864 2222 46778899999999999999999999986 34332
Q ss_pred -cHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhH
Q 001632 858 -SYNIIINVYAAA--------GLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTH 928 (1041)
Q Consensus 858 -~~~~l~~~~~~~--------g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 928 (1041)
.+..+..++... |+.++|++.|+++.+. .+.+......+..... ... ... ..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~a~~~~~~----~~~------~~~--------~~ 168 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-YPNSEYAPDAKKRMDY----LRN------RLA--------GK 168 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-CCCChhHHHHHHHHHH----HHH------HHH--------HH
Confidence 355566666654 7899999999999885 2333333332221111 000 000 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccC
Q 001632 929 VNHLLSAFSKAGLMAEATRVYNESLAAGI-IP-DLACYRTMLKGYMDHGYIEEGINLFEEVRESSE 992 (1041)
Q Consensus 929 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 992 (1041)
...++..|.+.|++++|+..++++++... .| ....+..++.++...|++++|..+++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 23577788999999999999999987521 12 346788889999999999999999988776543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2e-06 Score=93.61 Aligned_cols=206 Identities=17% Similarity=0.124 Sum_probs=98.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH-------HHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001632 771 NTCIKAMLGAGKLHFAASIYERML-------VYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLL 843 (1041)
Q Consensus 771 ~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 843 (1041)
..+...+.+.|-...|..++++.- -|...|+..+|.++..+..+. +|+...|..+.+......-+++|.++
T Consensus 402 ~~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawEl 479 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWEL 479 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHH
Confidence 344555556666666666666532 233444444444444444442 35555555555554444445555555
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 001632 844 FSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIP 923 (1041)
Q Consensus 844 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 923 (1041)
++..-.+ .-..+.......++++++.+.|+.-.+. .+.-..+|-.+..+..+.+++..|.+.|...+... |
T Consensus 480 sn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~-nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-P 550 (777)
T KOG1128|consen 480 SNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI-NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-P 550 (777)
T ss_pred hhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc-CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-C
Confidence 5443221 0000111112245555555555554443 22334445555555555555555555555555532 2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001632 924 PSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVR 988 (1041)
Q Consensus 924 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 988 (1041)
.+...||++..+|.+.|+-.+|...+++.++.. .-+...|-..+-...+.|.+++|+..++++.
T Consensus 551 d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 551 DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 223355555555555555555555555555543 2233334344444445555555555555544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.5e-05 Score=91.06 Aligned_cols=181 Identities=10% Similarity=0.083 Sum_probs=134.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHH
Q 001632 801 KLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQ 880 (1041)
Q Consensus 801 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 880 (1041)
.-+...++|+++.+. .....+|..|...|.+.+++++|.++|+.|.++ +.-....|..++..+.+.++-+.|..+++
T Consensus 1512 ~eesl~kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~ 1588 (1710)
T KOG1070|consen 1512 TEESLKKVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLK 1588 (1710)
T ss_pred cHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 344455566666653 233567889999999999999999999999987 44456789999999999999999999999
Q ss_pred HHHHcCCCCC--HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001632 881 AMQRDGFSPN--SF-TYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGI 957 (1041)
Q Consensus 881 ~m~~~g~~~~--~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 957 (1041)
+.++. -|. .. .....++.-.+.|+.+.+..+|+..+... |.....|+.+++.=.++|+.+.+..+|++.+..++
T Consensus 1589 rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1589 RALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 98884 344 22 23344555678999999999999999752 55567899999999999999999999999999888
Q ss_pred CCCH--HHHHHHHHHHHhcCChHHHHHHHHHH
Q 001632 958 IPDL--ACYRTMLKGYMDHGYIEEGINLFEEV 987 (1041)
Q Consensus 958 ~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~ 987 (1041)
.|-. ..|.-.+..--.+|+-+.+..+=.++
T Consensus 1666 ~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1666 SIKKMKFFFKKWLEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred ChhHhHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 7743 34444444444556644444433333
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.8e-06 Score=94.60 Aligned_cols=214 Identities=14% Similarity=0.136 Sum_probs=170.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----cccHHHHHHHHHHcCCHHHHHHHHHHH
Q 001632 808 MFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPG-----LISYNIIINVYAAAGLYNEVEKLIQAM 882 (1041)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m 882 (1041)
-|+++.... |.+...|-.+|....+.++.++|++++++.+.. +.+. .-.|.++++.....|.-+...++|++.
T Consensus 1446 Dferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1446 DFERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 344444432 344567889999999999999999999999875 3221 235777788777888888889999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CH
Q 001632 883 QRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIP-DL 961 (1041)
Q Consensus 883 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~ 961 (1041)
.+. ......|..|...|.+.+++++|.++|+.|.++ +......|..+++.+.++.+-++|.++++++++. .+- ..
T Consensus 1524 cqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lPk~eH 1599 (1710)
T KOG1070|consen 1524 CQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS-LPKQEH 1599 (1710)
T ss_pred HHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cchhhh
Confidence 875 223345888999999999999999999999986 3567789999999999999999999999999885 332 12
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCcc
Q 001632 962 -ACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRIP 1027 (1041)
Q Consensus 962 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 1027 (1041)
....-.+..-+++|+-+.+..+|+-.....|.-...|+..++.=.+.|..+.++.+|+++.+.+++
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 233444556678999999999999988889988899999999999999999999999999988875
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.3e-06 Score=93.77 Aligned_cols=133 Identities=11% Similarity=0.056 Sum_probs=74.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHH
Q 001632 887 FSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSC-THVNHLLSAFSKAGLMAEATRVYNESLAAGIIP-DLACY 964 (1041)
Q Consensus 887 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~ 964 (1041)
.+.+...+..|..+..+.|++++|+..++.+.+. .|+. .....++.++.+.+++++|...+++.+.. .| +....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHH
Confidence 3444555555555555666666666666666653 2433 24445555566666666666666665552 33 33344
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 001632 965 RTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 965 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 1023 (1041)
..+..++.+.|++++|+.+|+++....|.++.++..+++++...|+.++|...+++..+
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445555566666666666665555555555666666666666666666666655543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.0008 Score=71.21 Aligned_cols=156 Identities=10% Similarity=0.113 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC-CCCCChhHHHHHHHHHHhcCCHHHHHH
Q 001632 872 YNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEA---AKYSEAEETINSMQKQ-GIPPSCTHVNHLLSAFSKAGLMAEATR 947 (1041)
Q Consensus 872 ~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~ 947 (1041)
.+++..+++..++.-..-+..+|..+..--... ...+..-.++++++.. ...|+ .+|..++..-.+..=++.|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHH
Confidence 345555565555432222334444433211111 1355666777777753 23343 456777777777777889999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCc
Q 001632 948 VYNESLAAGIIP-DLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRI 1026 (1041)
Q Consensus 948 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 1026 (1041)
+|.++.+.+..+ +..++.+++.-|+ .+|.+-|..+|+--....++++......++.+.+.|+-..|..+|+++...++
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 999998876665 5666777766554 56789999999998888899998888889999999999999999999998877
Q ss_pred cch
Q 001632 1027 PFM 1029 (1041)
Q Consensus 1027 ~~~ 1029 (1041)
+..
T Consensus 467 ~~~ 469 (656)
T KOG1914|consen 467 SAD 469 (656)
T ss_pred Chh
Confidence 633
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.1e-06 Score=78.77 Aligned_cols=111 Identities=12% Similarity=0.015 Sum_probs=96.7
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 001632 911 EETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRES 990 (1041)
Q Consensus 911 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 990 (1041)
+.++++.++. .|+. +..++..+...|++++|...|+.++.. -+.+...|..+..++...|++++|+..|+++.+.
T Consensus 13 ~~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMA-QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4567777763 4653 567889999999999999999999985 3447888999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCc
Q 001632 991 SESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRI 1026 (1041)
Q Consensus 991 ~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 1026 (1041)
.|.++..+..++.++...|++++|.+.+++..+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999877544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.9e-05 Score=76.75 Aligned_cols=120 Identities=7% Similarity=0.028 Sum_probs=62.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--hHHH
Q 001632 904 AAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGY-MDHGY--IEEG 980 (1041)
Q Consensus 904 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A 980 (1041)
.++.+++...++..++.+ +.+...|..|+..|...|++++|+..|+++++. .+.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL-RGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 444455555555555443 344445555555555555555555555555552 122344444444432 34444 3555
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccC
Q 001632 981 INLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVR 1025 (1041)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 1025 (1041)
..+++++.+..|.++.++..++..+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 555555555555555555555555555555555555555554443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00011 Score=69.97 Aligned_cols=197 Identities=13% Similarity=0.142 Sum_probs=151.2
Q ss_pred cCChHHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHH-HHHHHHcCCH
Q 001632 799 GRKLDKALEMFNTARS---LG-LSLDEK-AYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNII-INVYAAAGLY 872 (1041)
Q Consensus 799 ~~~~~~A~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-~~~~~~~g~~ 872 (1041)
..+.++..+++..+.. .| ..++.- +|..++-+....|+.+.|...++++.++ + |...-...| ..-+...|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 3455666666666543 23 445554 4666677777889999999999999887 3 555333333 3345678999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001632 873 NEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNES 952 (1041)
Q Consensus 873 ~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 952 (1041)
++|+++|+.+++.. +.|.+++.--+.+.-..|+.-+|++.+..-.+. +..|...|..|.+.|...|++++|.--++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999999874 677888887777778889989999999998887 6789999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhccCChHHHHHH
Q 001632 953 LAAGIIPDLACYRTMLKGYMDHG---YIEEGINLFEEVRESSESDKFIMSA 1000 (1041)
Q Consensus 953 ~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~ 1000 (1041)
+-. -|.++..+..+...++-.| +++-|.++|+++.+..+.+...+.-
T Consensus 181 ll~-~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 181 LLI-QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred HHc-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 873 3447778888888766544 6888999999999988866655443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.2e-05 Score=88.22 Aligned_cols=240 Identities=9% Similarity=0.100 Sum_probs=147.1
Q ss_pred CCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHH
Q 001632 693 CKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVA-ISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYN 771 (1041)
Q Consensus 693 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 771 (1041)
.+.+...+..|+..|...+++++|.++.+...+. .|+... |..+...+...++.+++..+ .+.
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l------------ 90 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLI------------ 90 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhh------------
Confidence 4566778888888888889999999988877765 455443 33333345555555544333 111
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001632 772 TCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEG 851 (1041)
Q Consensus 772 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 851 (1041)
+ .+....++.-...++..+... .-+...+..|..+|-+.|+.++|..+++++++..
T Consensus 91 ---~-------------------~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D 146 (906)
T PRK14720 91 ---D-------------------SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD 146 (906)
T ss_pred ---h-------------------hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 1 122233443333344444443 3455577778888888888888888888888864
Q ss_pred CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-HHH
Q 001632 852 IKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCT-HVN 930 (1041)
Q Consensus 852 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~ 930 (1041)
. -|....|.++-.|+.. +.++|++++.+.... |...+++.++.++++++.+.. |+.. .+.
T Consensus 147 ~-~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d~f~ 207 (906)
T PRK14720 147 R-DNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFDFFL 207 (906)
T ss_pred c-ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccchHHH
Confidence 2 2556777788888877 888888888777653 566667888888888888753 3322 222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 001632 931 HLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYR 1006 (1041)
Q Consensus 931 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 1006 (1041)
.+.......-...++ ..++-.+..-|...+++++++.+++.+.+..+.|..+...++.+|.
T Consensus 208 ~i~~ki~~~~~~~~~---------------~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 208 RIERKVLGHREFTRL---------------VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhhhccchh---------------HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 222221111011111 1222223344455667778888888877777777777777777776
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.1e-05 Score=81.03 Aligned_cols=190 Identities=9% Similarity=0.017 Sum_probs=148.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-
Q 001632 831 YGKAGKTHEASLLFSEMQEEGIKPGL-ISYNIIINVYAAAG-LYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKY- 907 (1041)
Q Consensus 831 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~- 907 (1041)
+...++.++|+.+..++++. .|+. ..|+.-..++...| ++++++..++++.+. .+.+..+|+....++.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~-npknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 47 YASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED-NPKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH-CCcchHHhHHHHHHHHHcCchh
Confidence 44567889999999999986 4554 45666666677777 689999999999886 355666788777777777763
Q ss_pred -HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CC----hHH
Q 001632 908 -SEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDH---GY----IEE 979 (1041)
Q Consensus 908 -~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~ 979 (1041)
++++.+++.+++.+ +.+..+|+....++...|++++|++.++++++.+ +.+..+|+.....+.+. |. .++
T Consensus 124 ~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHH
Confidence 77899999999865 5677899999999999999999999999999864 33666777666655544 22 357
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHh----cCChhHHHHHHHHhhccC
Q 001632 980 GINLFEEVRESSESDKFIMSAAVHLYRY----AGKEHEANDILDSMNSVR 1025 (1041)
Q Consensus 980 A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~ 1025 (1041)
++.+..+++...|.|..++..+..+|.. .++..+|.++..+..+.+
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 8888889999999999999999999988 355677888888876644
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.7e-05 Score=72.37 Aligned_cols=107 Identities=19% Similarity=0.215 Sum_probs=48.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 001632 901 YTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKA----GLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGY 976 (1041)
Q Consensus 901 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 976 (1041)
+.+..+++-|.+.++.|.+- .+..+.+.|+.+|.+. +.+.+|.-+|++|-++ .+|++.+.+.++..++..|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 34444444444444444441 2223344444433321 2344444455554432 44444444444444444455
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCh
Q 001632 977 IEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKE 1011 (1041)
Q Consensus 977 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 1011 (1041)
+++|..+++.+..+.+.++.++..++.+-.+.|+-
T Consensus 223 ~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 55555555554444444444444444444444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.5e-05 Score=77.85 Aligned_cols=142 Identities=21% Similarity=0.190 Sum_probs=84.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCcccH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCH
Q 001632 830 FYGKAGKTHEASLLFSEMQEEGIKPGLISY-NIIINVYAAAGLYNEVEKLIQAMQRDGFSPN-SFTYLSLVQAYTEAAKY 907 (1041)
Q Consensus 830 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~ 907 (1041)
.+...|++++|+..++.++.. .|+...| ......+.+.|+.++|.+.++++... .|+ ......+.++|.+.|++
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCCh
Confidence 344556666666666666654 3444333 34455666666666666666666663 343 44455566666666666
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001632 908 SEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEV 987 (1041)
Q Consensus 908 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 987 (1041)
.+|+.+++...... +.|+..|..|..+|...|+..+|..-+.+.. .-.|++++|+..+..+
T Consensus 391 ~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~------------------~~~G~~~~A~~~l~~A 451 (484)
T COG4783 391 QEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY------------------ALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH------------------HhCCCHHHHHHHHHHH
Confidence 66666666666543 5555666666666666666666666655542 2456666666666666
Q ss_pred HhccCCh
Q 001632 988 RESSESD 994 (1041)
Q Consensus 988 ~~~~~~~ 994 (1041)
.+....+
T Consensus 452 ~~~~~~~ 458 (484)
T COG4783 452 SQQVKLG 458 (484)
T ss_pred HHhccCC
Confidence 6554443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.9e-05 Score=71.21 Aligned_cols=188 Identities=16% Similarity=0.177 Sum_probs=146.8
Q ss_pred cCCHHHHHHHHHHHHHc---C-CCCCcc-cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 001632 834 AGKTHEASLLFSEMQEE---G-IKPGLI-SYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYS 908 (1041)
Q Consensus 834 ~g~~~~A~~~~~~m~~~---g-~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~ 908 (1041)
..+.++..+++.++... | ..++.. .|-.++-+....|..+.|...++++... ++-+...-..-.--+...|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 34677888888877653 4 455543 3445566677889999999999999886 5333333222233356789999
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001632 909 EAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVR 988 (1041)
Q Consensus 909 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 988 (1041)
+|+++|+.+++.+ |.|.+++.--+-+.-..|+--+|++-+.+.++. +..|...|.-+...|...|++++|.--++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999999976 666677777777777889888999999999986 77899999999999999999999999999998
Q ss_pred hccCChHHHHHHHHHHHHhcC---ChhHHHHHHHHhhcc
Q 001632 989 ESSESDKFIMSAAVHLYRYAG---KEHEANDILDSMNSV 1024 (1041)
Q Consensus 989 ~~~~~~~~~~~~l~~~~~~~g---~~~eA~~~~~~~~~~ 1024 (1041)
-..|-++..+..++++++-.| +.+-|.+.+.+..+.
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 888999999999999977666 556677777666553
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.6e-07 Score=58.73 Aligned_cols=32 Identities=34% Similarity=0.668 Sum_probs=14.6
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 001632 283 GVAPTDFTYTLVISSFVKGSLLEEALKTFNEM 314 (1041)
Q Consensus 283 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 314 (1041)
|+.||..||+.||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.7e-05 Score=73.25 Aligned_cols=165 Identities=11% Similarity=0.032 Sum_probs=137.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001632 820 DEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQ 899 (1041)
Q Consensus 820 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 899 (1041)
|..+ ..+-..+.-.|+-+.+..+..+.... ..-|....+.++....+.|++.+|+..|.+.... -++|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHH
Confidence 4444 66777888889988888888876543 1224445566889999999999999999999885 6889999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 001632 900 AYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEE 979 (1041)
Q Consensus 900 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 979 (1041)
+|.+.|++++|..-|.+..+.. +-++..+++|+..|.-.|+.+.|..++...... ..-|..+-..+..+....|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~-~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS-PAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC-CCCchHHHHHHHHHHhhcCChHH
Confidence 9999999999999999999963 456678999999999999999999999998875 23378888888888899999999
Q ss_pred HHHHHHHHHh
Q 001632 980 GINLFEEVRE 989 (1041)
Q Consensus 980 A~~~~~~~~~ 989 (1041)
|..+..+-+.
T Consensus 221 A~~i~~~e~~ 230 (257)
T COG5010 221 AEDIAVQELL 230 (257)
T ss_pred HHhhcccccc
Confidence 9998877443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.4e-07 Score=57.94 Aligned_cols=32 Identities=44% Similarity=0.564 Sum_probs=18.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001632 816 GLSLDEKAYMNLVSFYGKAGKTHEASLLFSEM 847 (1041)
Q Consensus 816 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 847 (1041)
|+.||..+||.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.7e-05 Score=84.04 Aligned_cols=213 Identities=10% Similarity=0.055 Sum_probs=142.2
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 001632 658 GYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISI 737 (1041)
Q Consensus 658 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 737 (1041)
+++|--..-..+.+.+...|-..+|..+|+++. .|...+.+|+..|+..+|..+..+-.++ +||+..|..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 333333444444555555555555555555432 3444555555555555555555554442 344444444
Q ss_pred HHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH---------HHhccCChHHHHHH
Q 001632 738 LVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERML---------VYGRGRKLDKALEM 808 (1041)
Q Consensus 738 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~A~~~ 808 (1041)
+.+... ...-+++|.++++... ...+.++++++.+.
T Consensus 463 LGDv~~-----------------------------------d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~h 507 (777)
T KOG1128|consen 463 LGDVLH-----------------------------------DPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKH 507 (777)
T ss_pred hhhhcc-----------------------------------ChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHH
Confidence 444443 3334444444443322 12346788888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 001632 809 FNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGL-ISYNIIINVYAAAGLYNEVEKLIQAMQRDGF 887 (1041)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 887 (1041)
|+.-.+.. +....+|-.+..+..+.++++.|.+.|.....- .||. ..||.+..+|.+.|+-.+|...+++..+.+
T Consensus 508 le~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn- 583 (777)
T KOG1128|consen 508 LERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN- 583 (777)
T ss_pred HHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-
Confidence 88887765 566778888888888999999999999988875 5655 789999999999999999999999998875
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 888 SPNSFTYLSLVQAYTEAAKYSEAEETINSMQK 919 (1041)
Q Consensus 888 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 919 (1041)
..+...|...+......|.+++|.+.+.++.+
T Consensus 584 ~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 584 YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 34444566666667889999999999999886
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=8e-05 Score=78.05 Aligned_cols=143 Identities=23% Similarity=0.164 Sum_probs=118.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHhcC
Q 001632 862 IINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPS-CTHVNHLLSAFSKAG 940 (1041)
Q Consensus 862 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 940 (1041)
..-.+...|.+++|++.++.+... .+.|..-.....+.+.+.++..+|.+.++.++.. .|+ ....-+++.+|.+.|
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcC
Confidence 344456789999999999999886 5667777778888999999999999999999996 365 567788999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHH
Q 001632 941 LMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDS 1020 (1041)
Q Consensus 941 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 1020 (1041)
+..+|+.+++..... .+-|+..|..|..+|...|+..+|.... +..|...|++++|...+.+
T Consensus 389 ~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 389 KPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFLMR 450 (484)
T ss_pred ChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHHHH
Confidence 999999999998875 5668999999999999999988776654 4455667888888888777
Q ss_pred hhccC
Q 001632 1021 MNSVR 1025 (1041)
Q Consensus 1021 ~~~~~ 1025 (1041)
.++..
T Consensus 451 A~~~~ 455 (484)
T COG4783 451 ASQQV 455 (484)
T ss_pred HHHhc
Confidence 76643
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.4e-05 Score=89.72 Aligned_cols=186 Identities=15% Similarity=0.132 Sum_probs=137.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-------
Q 001632 819 LDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLIS-YNIIINVYAAAGLYNEVEKLIQAMQRDGFSPN------- 890 (1041)
Q Consensus 819 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~------- 890 (1041)
.+...+..|+..|...+++++|.++.+...+. .|+... |-.+...+.+.+++.++..+ .+... +..+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve 103 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVE 103 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHH
Confidence 45567888888888889999999998877765 455533 33444466677776666555 33332 2222
Q ss_pred ------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 001632 891 ------------SFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGII 958 (1041)
Q Consensus 891 ------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 958 (1041)
...+..|..+|.+.|+.++|..+|+++++.+ +.|..+.|.++..|... +.++|++++.++++.
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--- 178 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--- 178 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---
Confidence 3677778889999999999999999999987 67788999999999999 999999999998763
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHH--------------------HHHHHHHHHHhcCChhHHHHHH
Q 001632 959 PDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKF--------------------IMSAAVHLYRYAGKEHEANDIL 1018 (1041)
Q Consensus 959 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------------------~~~~l~~~~~~~g~~~eA~~~~ 1018 (1041)
+...+++.++..+++++.+..+.|.. .+..+...|....+|+++.+++
T Consensus 179 ------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 179 ------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred ------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 44555666666666666665555432 3344446777888999999999
Q ss_pred HHhhccCc
Q 001632 1019 DSMNSVRI 1026 (1041)
Q Consensus 1019 ~~~~~~~~ 1026 (1041)
+.+++..-
T Consensus 247 K~iL~~~~ 254 (906)
T PRK14720 247 KKILEHDN 254 (906)
T ss_pred HHHHhcCC
Confidence 99987654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.33 E-value=8.5e-06 Score=74.75 Aligned_cols=115 Identities=13% Similarity=0.049 Sum_probs=74.3
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001632 878 LIQAMQRDGFSP-NSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAG 956 (1041)
Q Consensus 878 ~~~~m~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 956 (1041)
+|++.... .| +......+...+...|++++|...++.+.+.+ +.+...+..++.+|...|++++|..++++.++.
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~- 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL- 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 44555542 33 33345556666677777777777777777653 445566777777777777777777777777664
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHH
Q 001632 957 IIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKF 996 (1041)
Q Consensus 957 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 996 (1041)
.+.+...+..+...|...|++++|+..++++.+..|.+..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 2334556666666777777777777777777776665543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.9e-05 Score=86.24 Aligned_cols=131 Identities=9% Similarity=0.084 Sum_probs=70.7
Q ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 001632 856 LISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPN-SFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLS 934 (1041)
Q Consensus 856 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 934 (1041)
...+-.|.....+.|.+++|+.+++...+ +.|| ......++.++.+.+++++|+..+++..+.+ +.+......++.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 44455555555556666666666665555 2333 2334455555556666666666666655543 233344555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 001632 935 AFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRES 990 (1041)
Q Consensus 935 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 990 (1041)
++.+.|++++|+.+|++++.. .+-+..++..+..++...|+.++|...|+++.+.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555666666666666665542 2223455555555555566666666666665543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.4e-05 Score=70.67 Aligned_cols=93 Identities=18% Similarity=0.147 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc
Q 001632 860 NIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKA 939 (1041)
Q Consensus 860 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 939 (1041)
..+...+...|++++|...|+.+... .+.+...+..+...+...|++++|...++...+.+ +.+...+..++.+|...
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAY-DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHc
Confidence 34444555555555555555555443 23344445555555555555555555555555532 33344455555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 001632 940 GLMAEATRVYNESLA 954 (1041)
Q Consensus 940 g~~~~A~~~~~~~~~ 954 (1041)
|++++|+..+++.++
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00079 Score=64.80 Aligned_cols=137 Identities=15% Similarity=0.229 Sum_probs=76.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----c
Q 001632 366 SLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLT----S 441 (1041)
Q Consensus 366 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 441 (1041)
..|+..+++++|++...... +......-+..+.+..+++-|.+.++.|.+.. +..|.+.|..++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccc
Confidence 34556666666666554411 23333333444555566666666666666532 44455555555543 2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCC
Q 001632 442 RNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDL 512 (1041)
Q Consensus 442 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 512 (1041)
+....|..+|++|.++ ..|+..+.+....++...|++++|+.+++..+.....+..+...++.+-...|.
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGK 256 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence 3455666666666554 356666666666666666666666666666666655555555555554444444
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.9e-05 Score=68.19 Aligned_cols=125 Identities=18% Similarity=0.221 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 001632 894 YLSLVQAYTEAAKYSEAEETINSMQKQGIPPS---CTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD--LACYRTML 968 (1041)
Q Consensus 894 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~ 968 (1041)
|..++..+ ..++...+.+.++.+.+.. +.+ ....-.++..+...|++++|...|+..++....|+ ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 44444444 4788888888888888753 333 12344566788888999999999999887642222 23445567
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 001632 969 KGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSM 1021 (1041)
Q Consensus 969 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 1021 (1041)
..+...|++++|+..++.+. ..+..+......+++|.+.|++++|...+++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 78888999999999987743 34445677888899999999999999888763
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.4e-05 Score=80.13 Aligned_cols=122 Identities=19% Similarity=0.153 Sum_probs=76.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001632 896 SLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHG 975 (1041)
Q Consensus 896 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 975 (1041)
+|+..+...++++.|+++++++.+.+ |+ ....++..+...++-.+|++++++.++. .+.|...+...+.-|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 34444455566666666666666643 43 2334566666666666777777776653 3335555555555666777
Q ss_pred ChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 001632 976 YIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMN 1022 (1041)
Q Consensus 976 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 1022 (1041)
+++.|+.+++++.+..|.+...+..|+.+|...|++++|+-.++.+.
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777777777777777777777777777777776666554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.6e-05 Score=74.16 Aligned_cols=108 Identities=19% Similarity=0.228 Sum_probs=65.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCh
Q 001632 899 QAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD-LACYRTMLKGYMDHGYI 977 (1041)
Q Consensus 899 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 977 (1041)
+-+.+.++|.+|+..|.++++.. |.|.+.|.....+|++.|.++.|++-++..+. +.|. ..+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcH
Confidence 33556666666666666666643 34445556666666666666666666666665 3332 44666666666666666
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHhcC
Q 001632 978 EEGINLFEEVRESSESDKFIMSAAVHLYRYAG 1009 (1041)
Q Consensus 978 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 1009 (1041)
++|++.|+++.+..|.+...-..|-.+-.+.+
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 66666666666666666655555544444333
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.2e-05 Score=67.90 Aligned_cols=95 Identities=11% Similarity=0.008 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 001632 927 THVNHLLSAFSKAGLMAEATRVYNESLAAGIIP-DLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLY 1005 (1041)
Q Consensus 927 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 1005 (1041)
.....++..+...|++++|+++|+-+.. +.| +...|..|...+-..|++++|+..|+++....|.|+..+..++.+|
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3445556666666777777777766655 233 4555566666666667777777777776666666677777777777
Q ss_pred HhcCChhHHHHHHHHhhc
Q 001632 1006 RYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 1006 ~~~g~~~eA~~~~~~~~~ 1023 (1041)
...|+.++|.+-|+...+
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777766665544
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00017 Score=66.62 Aligned_cols=114 Identities=17% Similarity=0.257 Sum_probs=55.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCc----ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCH
Q 001632 834 AGKTHEASLLFSEMQEEGIKPGL----ISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPN--SFTYLSLVQAYTEAAKY 907 (1041)
Q Consensus 834 ~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~g~~ 907 (1041)
.++...+...++.+.+. .|+. ...-.+...+...|++++|...|++.......++ ......|...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 45555555555555554 1222 1122233445555666666666666555431111 11233344555556666
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 001632 908 SEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNE 951 (1041)
Q Consensus 908 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 951 (1041)
++|+..++..... ......+..++++|...|++++|...|++
T Consensus 102 d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666665443221 12233444555566666666666665554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.3e-05 Score=64.31 Aligned_cols=81 Identities=23% Similarity=0.276 Sum_probs=55.4
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHH
Q 001632 939 AGLMAEATRVYNESLAAGII-PDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDI 1017 (1041)
Q Consensus 939 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~ 1017 (1041)
.|++++|+.+++++++.... ++...+..+...|.+.|++++|+.++++ .+..+.+......++.+|...|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57778888888887764221 1344555577778888888888888877 444555666666678888888888888887
Q ss_pred HHH
Q 001632 1018 LDS 1020 (1041)
Q Consensus 1018 ~~~ 1020 (1041)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00028 Score=62.87 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHH
Q 001632 893 TYLSLVQAYTEAAKYSEAEETINSMQKQGIPPS----CTHVNHLLSAFSKAGLMAEATRVYNESLAAGII--PDLACYRT 966 (1041)
Q Consensus 893 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~ 966 (1041)
++..++..+.+.|++++|.+.++.+.+.. |+ ...+..++.++.+.|++++|++.++++...... .....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 34455666667777777777777776642 22 234556677777777777777777776653111 11345556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCChHHHH
Q 001632 967 MLKGYMDHGYIEEGINLFEEVRESSESDKFIM 998 (1041)
Q Consensus 967 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 998 (1041)
+..++.+.|++++|+..++++.+..|.+..+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 66667777777777777777777666665443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00037 Score=74.39 Aligned_cols=124 Identities=17% Similarity=0.156 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001632 823 AYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYT 902 (1041)
Q Consensus 823 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 902 (1041)
...+|+..+...++++.|..+|+++.+. .|+ ....+++.+...++-.+|++++++..+. .+-|...+......+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~--~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER--DPE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc--CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 3445677777789999999999999987 355 4456888888899999999999999875 4556666777777788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001632 903 EAAKYSEAEETINSMQKQGIPPSC-THVNHLLSAFSKAGLMAEATRVYNESL 953 (1041)
Q Consensus 903 ~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 953 (1041)
..++++.|+++.+++.+. .|+. .+|..|+.+|...|+++.|+-.++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999995 4554 599999999999999999999888754
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0015 Score=66.82 Aligned_cols=163 Identities=13% Similarity=0.029 Sum_probs=108.1
Q ss_pred CCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 001632 819 LDEKAYMNL-VSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINV--YAAAGLYNEVEKLIQAMQRDGFSPNSFTYL 895 (1041)
Q Consensus 819 ~~~~~~~~l-~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 895 (1041)
|....|..| ..++.-.|++++|.++--...+.. + .-.+..++++ +--.++.+.|...|++.+. ..||...-.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--A-TNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--c-chhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHH
Confidence 333444433 455667788888888877776641 1 1223333433 3356788889998888876 346644332
Q ss_pred HH-------------HHHHHhcCCHHHHHHHHHHHHHCC---CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001632 896 SL-------------VQAYTEAAKYSEAEETINSMQKQG---IPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIP 959 (1041)
Q Consensus 896 ~l-------------~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 959 (1041)
.. .+-..+.|++.+|.+.|.+.+..+ ..|+...|........+.|+.++|+.-+++.++ +
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--i-- 316 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--I-- 316 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--c--
Confidence 22 334567899999999999999732 334445677778888899999999999999876 2
Q ss_pred CHH-HHHHHHH--HHHhcCChHHHHHHHHHHHhc
Q 001632 960 DLA-CYRTMLK--GYMDHGYIEEGINLFEEVRES 990 (1041)
Q Consensus 960 ~~~-~~~~l~~--~~~~~g~~~~A~~~~~~~~~~ 990 (1041)
|+. +.-.+.+ ++...++|++|++.++++.+.
T Consensus 317 D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 317 DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 433 2333333 455678999999999997664
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00015 Score=61.62 Aligned_cols=93 Identities=20% Similarity=0.202 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhc
Q 001632 929 VNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYA 1008 (1041)
Q Consensus 929 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1008 (1041)
+..++..+...|++++|+..++++++. .+.+...+..+...+...|++++|+..++++....+.+...+..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 344555555666666666666666553 2223344555555566666666666666666655555555666666666666
Q ss_pred CChhHHHHHHHHhh
Q 001632 1009 GKEHEANDILDSMN 1022 (1041)
Q Consensus 1009 g~~~eA~~~~~~~~ 1022 (1041)
|++++|...+++..
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 66666666666554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0016 Score=68.05 Aligned_cols=121 Identities=17% Similarity=0.204 Sum_probs=52.8
Q ss_pred HHHhc-CCHHHHHHHHHHHHHC----CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HH-HHHH
Q 001632 900 AYTEA-AKYSEAEETINSMQKQ----GIPPS--CTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD-----LA-CYRT 966 (1041)
Q Consensus 900 ~~~~~-g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~-~~~~ 966 (1041)
.|... |++++|.+.|++..+. + .+. ..++..++.++.+.|++++|+++|++........+ .. .+-.
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 34444 5666666666665541 1 111 12344555666666666666666666554321111 10 1111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCC-----hHHHHHHHHHHHHh--cCChhHHHHHHHHh
Q 001632 967 MLKGYMDHGYIEEGINLFEEVRESSES-----DKFIMSAAVHLYRY--AGKEHEANDILDSM 1021 (1041)
Q Consensus 967 l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~--~g~~~eA~~~~~~~ 1021 (1041)
.+-.+...||...|...+++.....|. .......|+.++.. ...+.+|+.-++++
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 122333456666666666665543321 12344445555543 22344444444433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00039 Score=74.97 Aligned_cols=108 Identities=11% Similarity=-0.020 Sum_probs=78.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 001632 898 VQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYI 977 (1041)
Q Consensus 898 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 977 (1041)
...+...|++++|+..|+++++.+ +.+...|..++.+|...|++++|+..++++++. .+.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l-~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL-DPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHhCCH
Confidence 445667788888888888888754 445567777788888888888888888888774 223566777777788888888
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 001632 978 EEGINLFEEVRESSESDKFIMSAAVHLYRY 1007 (1041)
Q Consensus 978 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1007 (1041)
++|+..|+++.+..|.++.+...+..+..+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 888888888888777777766666555433
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00039 Score=61.95 Aligned_cols=98 Identities=14% Similarity=0.081 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCh---HHHHH
Q 001632 927 THVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD----LACYRTMLKGYMDHGYIEEGINLFEEVRESSESD---KFIMS 999 (1041)
Q Consensus 927 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~ 999 (1041)
.++..++..+...|++++|++.++++++. .|+ ...+..+...+.+.|++++|+..++.+....|.+ +.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 35677888899999999999999999874 232 3466678889999999999999999988866654 56789
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhccCc
Q 001632 1000 AAVHLYRYAGKEHEANDILDSMNSVRI 1026 (1041)
Q Consensus 1000 ~l~~~~~~~g~~~eA~~~~~~~~~~~~ 1026 (1041)
.++.++.+.|++++|.+.++++.+...
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 999999999999999999999987643
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00044 Score=58.64 Aligned_cols=92 Identities=24% Similarity=0.312 Sum_probs=48.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001632 896 SLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHG 975 (1041)
Q Consensus 896 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 975 (1041)
.++..+...|++++|...++.+.+.. +.+...+..++.++...|++++|++.+++..+. .+.+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL-DPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHHHH
Confidence 34444555555566665555555532 222344555555555556666666666655543 1223344555555555566
Q ss_pred ChHHHHHHHHHHHh
Q 001632 976 YIEEGINLFEEVRE 989 (1041)
Q Consensus 976 ~~~~A~~~~~~~~~ 989 (1041)
++++|...+.++.+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 66666666555544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00071 Score=58.73 Aligned_cols=88 Identities=19% Similarity=0.186 Sum_probs=48.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHH
Q 001632 898 VQAYTEAAKYSEAEETINSMQKQGIPPS--CTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD----LACYRTMLKGY 971 (1041)
Q Consensus 898 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~ 971 (1041)
..++...|+.++|+.+|++..+.|+... ...+..+...|...|++++|+.++++.... . |+ ......+.-++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE-F-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-C-CCccccHHHHHHHHHHH
Confidence 4455666666666666666666654433 224555666666666666666666666553 1 22 11122223345
Q ss_pred HhcCChHHHHHHHHHH
Q 001632 972 MDHGYIEEGINLFEEV 987 (1041)
Q Consensus 972 ~~~g~~~~A~~~~~~~ 987 (1041)
...|+.++|+..+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 5666666666666553
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.72 E-value=6.2e-05 Score=49.44 Aligned_cols=33 Identities=45% Similarity=0.651 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001632 823 AYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPG 855 (1041)
Q Consensus 823 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 855 (1041)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.70 E-value=7.5e-05 Score=49.02 Aligned_cols=33 Identities=30% Similarity=0.545 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 001632 858 SYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPN 890 (1041)
Q Consensus 858 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 890 (1041)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677777777777777777777777777777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0016 Score=62.20 Aligned_cols=128 Identities=16% Similarity=0.185 Sum_probs=69.6
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 001632 858 SYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPN--SFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSA 935 (1041)
Q Consensus 858 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 935 (1041)
.+..+...|...|++++|+..|++..+.+..+. ...+..++..|.+.|++++|...+++..+.. +.+...+..++.+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 345555566666666666666666655321111 2345555666666666666666666666532 2234455555666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCC
Q 001632 936 FSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGK 1010 (1041)
Q Consensus 936 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 1010 (1041)
|...|+...+..-++..+. .+++|++.++++....|.+ +..++..+...|+
T Consensus 116 ~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666655554443333321 1567777777776666655 3334444444443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.05 Score=59.70 Aligned_cols=118 Identities=11% Similarity=0.064 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 001632 390 AADEVIYGLLIRIYGKLGLYEDAQKTFAETEQL-GLLS--------DEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMW 460 (1041)
Q Consensus 390 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~--------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 460 (1041)
.|....|..|...-...-.++.|+..|-+..+- |++. +...-.+-|.+ --|++++|.+++-++-.+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh-
Confidence 466777887777766666777777776554431 2210 00011111111 13666777777666654432
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC--C---ChhHHHHHHHHHHhcCCHHHHHHHHH
Q 001632 461 LSRFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGL--P---DAGSCNDMLNLYIKLDLTEKAKGFIA 521 (1041)
Q Consensus 461 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~A~~~~~ 521 (1041)
.+..+.+.||+-.+.++++. .|. . -...|+.+...+.....+++|.+.|.
T Consensus 766 --------Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666655555431 111 1 12344555555554445555544443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00077 Score=55.73 Aligned_cols=78 Identities=21% Similarity=0.439 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHhhCCCCCCHHHHH
Q 001632 222 GTMLCTYARWGNHKAMLTFYSAVKERGI-VPSTAVFNFMLSSLHKKS--------YHRKVIDLWRQMMDKGVAPTDFTYT 292 (1041)
Q Consensus 222 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~~~~~~~~ 292 (1041)
...|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. +.-..+.+|++|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445555555777777777777777777 677777777777666432 2334556666666666666666666
Q ss_pred HHHHHHH
Q 001632 293 LVISSFV 299 (1041)
Q Consensus 293 ~li~~~~ 299 (1041)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 6666554
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0012 Score=63.22 Aligned_cols=91 Identities=15% Similarity=0.123 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001632 893 TYLSLVQAYTEAAKYSEAEETINSMQKQGIPPS--CTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKG 970 (1041)
Q Consensus 893 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 970 (1041)
.+..+...+...|++++|...+++.++.+-.+. ...+..++.++.+.|++++|+..++++++. .+.+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL-NPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcccHHHHHHHHHH
Confidence 455555566666666666666666665321111 235566666666666666666666666653 12234445555555
Q ss_pred HHhcCChHHHHHHH
Q 001632 971 YMDHGYIEEGINLF 984 (1041)
Q Consensus 971 ~~~~g~~~~A~~~~ 984 (1041)
+...|+...+...+
T Consensus 116 ~~~~g~~~~a~~~~ 129 (172)
T PRK02603 116 YHKRGEKAEEAGDQ 129 (172)
T ss_pred HHHcCChHhHhhCH
Confidence 55555444444333
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.60 E-value=9.6e-05 Score=48.07 Aligned_cols=32 Identities=41% Similarity=0.559 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 001632 185 AYTILLRLYGQVGKIKLAEQTFLEMLEAGCEP 216 (1041)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 216 (1041)
+|+.+|++|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00067 Score=73.11 Aligned_cols=94 Identities=12% Similarity=-0.007 Sum_probs=84.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCC
Q 001632 931 HLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGK 1010 (1041)
Q Consensus 931 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 1010 (1041)
..+..+...|++++|++.|+++++. .+.+...|..+..+|...|++++|+..++++.+..|.++..+..++.+|...|+
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~-~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL-DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 3456777899999999999999985 334678888889999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhccC
Q 001632 1011 EHEANDILDSMNSVR 1025 (1041)
Q Consensus 1011 ~~eA~~~~~~~~~~~ 1025 (1041)
+++|...+++..+..
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999987654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.023 Score=59.34 Aligned_cols=95 Identities=20% Similarity=0.235 Sum_probs=43.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHH
Q 001632 703 MIDAYAKCGKAEDVYLLYKEATAQGCALD-----AVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAM 777 (1041)
Q Consensus 703 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 777 (1041)
....|...|++++|.+.|.+...-....+ ...|......+ +..++++|+..+.+ .+..|
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~---------------A~~~y 104 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEK---------------AIEIY 104 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHH---------------HHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHH---------------HHHHH
Confidence 34566667777777777776643210000 01112212222 22244444444333 34455
Q ss_pred HhcCChhHHHHHHHHHH-HHhcc-CChHHHHHHHHHHH
Q 001632 778 LGAGKLHFAASIYERML-VYGRG-RKLDKALEMFNTAR 813 (1041)
Q Consensus 778 ~~~g~~~~A~~~~~~~~-~~~~~-~~~~~A~~~~~~~~ 813 (1041)
...|++..|...+.++. +|... |++++|++.|+++.
T Consensus 105 ~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~ 142 (282)
T PF14938_consen 105 REAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAA 142 (282)
T ss_dssp HHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56666666555555544 44444 55555555555544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0019 Score=64.23 Aligned_cols=106 Identities=14% Similarity=0.124 Sum_probs=63.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC-CHH
Q 001632 887 FSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAG---LMAEATRVYNESLAAGIIP-DLA 962 (1041)
Q Consensus 887 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p-~~~ 962 (1041)
.+-|...|..|..+|...|+++.|...|....+.. +++...+..++.++.... +..++.+++++++.. .| |..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ir 228 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIR 228 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHH
Confidence 35566666666666666666666666666666642 344555556665554432 346666666666653 33 444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccCChH
Q 001632 963 CYRTMLKGYMDHGYIEEGINLFEEVRESSESDK 995 (1041)
Q Consensus 963 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 995 (1041)
....|...+...|++.+|...++.+.+..|+|.
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 445555566666666666666666666666553
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0014 Score=62.47 Aligned_cols=95 Identities=17% Similarity=0.135 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001632 891 SFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPP--SCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTML 968 (1041)
Q Consensus 891 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 968 (1041)
...+..++..+...|++++|+..+++.+.....+ ...++..++.+|...|++++|+..+++.++. .+.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-~~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-NPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHHH
Confidence 3445566666777788888888888777642111 1236777778888888888888888887763 222344555555
Q ss_pred HHHH-------hcCChHHHHHHHHH
Q 001632 969 KGYM-------DHGYIEEGINLFEE 986 (1041)
Q Consensus 969 ~~~~-------~~g~~~~A~~~~~~ 986 (1041)
..+. ..|++++|+..+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 5555 66776655444444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00037 Score=54.58 Aligned_cols=64 Identities=19% Similarity=0.194 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcC-ChhHHHHHHHHhhc
Q 001632 960 DLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAG-KEHEANDILDSMNS 1023 (1041)
Q Consensus 960 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~eA~~~~~~~~~ 1023 (1041)
++.+|..+...+...|++++|+..|+++.+..|.++.++..++.+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34566666677777777777777777777777777777777777777777 57777777766543
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00035 Score=53.89 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=30.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 001632 968 LKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMN 1022 (1041)
Q Consensus 968 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 1022 (1041)
...+.+.|++++|+..|+++.+..|.++.++..++.++...|++++|...++++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555555543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00016 Score=46.94 Aligned_cols=31 Identities=42% Similarity=0.648 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001632 823 AYMNLVSFYGKAGKTHEASLLFSEMQEEGIK 853 (1041)
Q Consensus 823 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 853 (1041)
+|+.++.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0034 Score=56.51 Aligned_cols=95 Identities=12% Similarity=0.037 Sum_probs=59.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001632 894 YLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMD 973 (1041)
Q Consensus 894 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 973 (1041)
.-.+...+...|++++|.++|+.+...+ +-+...|..|+-++-..|++++|+..|..+.... +.|+..+-.+...+..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 3344445566777777777777776643 3334456667777777777777777777766642 2355566666666677
Q ss_pred cCChHHHHHHHHHHHhc
Q 001632 974 HGYIEEGINLFEEVRES 990 (1041)
Q Consensus 974 ~g~~~~A~~~~~~~~~~ 990 (1041)
.|+.+.|..-|+.+...
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 77777777777765553
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0012 Score=70.84 Aligned_cols=121 Identities=16% Similarity=0.156 Sum_probs=68.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 001632 250 VPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDK--GVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYS 327 (1041)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 327 (1041)
+.+......+++.+....+++.+..++-..... ....-..|..++++.|.+.|..+.+..++..=...|+.||.+++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445555555555555555556666655555443 111222344566666666666666666666666666666666666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 001632 328 QLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYK 370 (1041)
Q Consensus 328 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 370 (1041)
.||+.+.+.|++..|.++...|...+...+..|+..-+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666666666555544444555554544444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00044 Score=53.35 Aligned_cols=62 Identities=16% Similarity=0.254 Sum_probs=32.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCh
Q 001632 932 LLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESD 994 (1041)
Q Consensus 932 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 994 (1041)
++..+...|++++|++.|+++++.. +-+...+..+..++...|++++|+.+|+++.+..|.|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3445555556666666666655531 2234455555555555566666666666555555544
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.018 Score=52.27 Aligned_cols=138 Identities=16% Similarity=0.218 Sum_probs=102.0
Q ss_pred CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhHH
Q 001632 853 KPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPS---CTHV 929 (1041)
Q Consensus 853 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~ 929 (1041)
-|.+.....|.+++...|++.+|..+|++...--+..|......+.++....+++..|...++.+-+.+ |+ +...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 566666667888888899999999999888775566788888888888888889999999998888843 32 2234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCh
Q 001632 930 NHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESD 994 (1041)
Q Consensus 930 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 994 (1041)
-.+.+.|...|...+|+.-|+..+. +.|++.........+.+.|+..+|..-+..+.+....+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~ 226 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKRS 226 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc
Confidence 5567888888888889888888887 46666544445556677887777777666655543333
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00088 Score=66.05 Aligned_cols=92 Identities=16% Similarity=0.092 Sum_probs=82.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhH
Q 001632 934 SAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHE 1013 (1041)
Q Consensus 934 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~e 1013 (1041)
.-+.+.+++.+|+..|.++++. .+-|++.|..-..+|.+.|.++.|++-.+.++...|..+.+|..|+.+|...|++++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 4557889999999999999985 344788888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCc
Q 001632 1014 ANDILDSMNSVRI 1026 (1041)
Q Consensus 1014 A~~~~~~~~~~~~ 1026 (1041)
|.+.+++.++..-
T Consensus 168 A~~aykKaLeldP 180 (304)
T KOG0553|consen 168 AIEAYKKALELDP 180 (304)
T ss_pred HHHHHHhhhccCC
Confidence 9999999877554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0047 Score=63.42 Aligned_cols=278 Identities=17% Similarity=0.071 Sum_probs=177.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC
Q 001632 702 SMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAG 781 (1041)
Q Consensus 702 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 781 (1041)
.....+.+..++.+|+..+...++..+. +..-|.--...+...|++++|..-.+.-++....... +..+-+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k--------~~~r~~ 124 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSK--------GQLREG 124 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccc--------cccchh
Confidence 3567788888899999999998887432 3445555566677777777776555444332211000 000000
Q ss_pred ChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCcccHH
Q 001632 782 KLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGI-KPGLISYN 860 (1041)
Q Consensus 782 ~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~ 860 (1041)
+ .+...++..+|.+.++ |...| ....|...++....... +|...+|-
T Consensus 125 ~------------c~~a~~~~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~ 172 (486)
T KOG0550|consen 125 Q------------CHLALSDLIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAK 172 (486)
T ss_pred h------------hhhhhHHHHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHH
Confidence 0 1122223333333332 01011 12233333343333222 24445555
Q ss_pred HH-HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh------------
Q 001632 861 II-INVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCT------------ 927 (1041)
Q Consensus 861 ~l-~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------------ 927 (1041)
.+ ..++.-.|++++|.+.--..++. -..+......-..++.-.++.+.|...|++.+..+ |+..
T Consensus 173 ~lka~cl~~~~~~~~a~~ea~~ilkl-d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~l 249 (486)
T KOG0550|consen 173 LLKAECLAFLGDYDEAQSEAIDILKL-DATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKL 249 (486)
T ss_pred HhhhhhhhhcccchhHHHHHHHHHhc-ccchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHH
Confidence 44 34567789999999888877764 23333333333445667889999999999999854 6543
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHH
Q 001632 928 -HVNHLLSAFSKAGLMAEATRVYNESLAAGIIP-----DLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAA 1001 (1041)
Q Consensus 928 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 1001 (1041)
.+..-+.-..+.|++.+|.+.|.+.+. +.| +...|........+.|+.++|+.--+.+.+..+.-...+..-
T Consensus 250 e~~k~~gN~~fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~r 327 (486)
T KOG0550|consen 250 EVKKERGNDAFKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRR 327 (486)
T ss_pred HHHHhhhhhHhhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHH
Confidence 233445667789999999999999986 444 355666666777899999999999999988777767778888
Q ss_pred HHHHHhcCChhHHHHHHHHhhccC
Q 001632 1002 VHLYRYAGKEHEANDILDSMNSVR 1025 (1041)
Q Consensus 1002 ~~~~~~~g~~~eA~~~~~~~~~~~ 1025 (1041)
+.++...++|++|++-+++..+..
T Consensus 328 a~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 328 ANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 889999999999999998876643
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00025 Score=58.15 Aligned_cols=80 Identities=18% Similarity=0.266 Sum_probs=46.3
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHH
Q 001632 904 AAKYSEAEETINSMQKQGI-PPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD-LACYRTMLKGYMDHGYIEEGI 981 (1041)
Q Consensus 904 ~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 981 (1041)
.|++++|+.+++++.+... .++...+..++.+|.+.|++++|++++++ .+ ..+. ..+.-.++.+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4667777777777776431 01334455567777777777777777766 22 2222 233334456677777777777
Q ss_pred HHHHH
Q 001632 982 NLFEE 986 (1041)
Q Consensus 982 ~~~~~ 986 (1041)
..+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77765
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.045 Score=55.25 Aligned_cols=57 Identities=12% Similarity=0.153 Sum_probs=46.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCChH---HHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 001632 967 MLKGYMDHGYIEEGINLFEEVRESSESDK---FIMSAAVHLYRYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 967 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 1023 (1041)
+..-|.+.|.+..|+.-++.+.+..|..+ .++..++..|.+.|..++|.+....+..
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 45568889999999999999998777654 6677788889999999999988876643
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00056 Score=53.38 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=26.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHH
Q 001632 938 KAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFI 997 (1041)
Q Consensus 938 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 997 (1041)
..|++++|++.|+++++. .+.+...+..++..|.+.|++++|..+++++....|.++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred hccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 344455555555554442 12234444444445555555555555555544444444333
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0034 Score=65.20 Aligned_cols=136 Identities=10% Similarity=0.127 Sum_probs=102.1
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 001632 857 ISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQA-YTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSA 935 (1041)
Q Consensus 857 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 935 (1041)
.+|..+++...+.+..+.|.++|++..+.+ ......|...... |...++.+.|.++|+..++. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 357888899999999999999999998642 2334445444444 33356777799999999986 56777888999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhccCChH
Q 001632 936 FSKAGLMAEATRVYNESLAAGIIPDL---ACYRTMLKGYMDHGYIEEGINLFEEVRESSESDK 995 (1041)
Q Consensus 936 ~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 995 (1041)
+.+.|+.+.|..+|++.+.. +.++. ..|...+.--.+.|+.+....+.+++.+..+.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999875 44433 4888888888889999999999999988777754
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.029 Score=51.04 Aligned_cols=133 Identities=14% Similarity=0.142 Sum_probs=101.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHH
Q 001632 818 SLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDG---FSPNSFTY 894 (1041)
Q Consensus 818 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~ 894 (1041)
.|++..-..|..++...|+..+|...|++...--+--|......+.++....++...|...++++.+.+ -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 566666667888888999999999999888764334466677778888888899999999998887742 2333 34
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 895 LSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 895 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
..+...|...|++++|+..|+..... -|+...-......+.++|+.++|..-+....+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 45667788889999999999988884 57777777777888888888777776666544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0021 Score=61.24 Aligned_cols=115 Identities=11% Similarity=0.040 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHH-CCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHH
Q 001632 907 YSEAEETINSMQK-QGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIP--DLACYRTMLKGYMDHGYIEEGINL 983 (1041)
Q Consensus 907 ~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~ 983 (1041)
+..+...+..+.+ .+..-....+..++..+...|++++|+..+++.+.....+ ...++..+...+...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444445555532 2211223467788888999999999999999998742222 235788888999999999999999
Q ss_pred HHHHHhccCChHHHHHHHHHHHH-------hcCChhHHHHHHHHh
Q 001632 984 FEEVRESSESDKFIMSAAVHLYR-------YAGKEHEANDILDSM 1021 (1041)
Q Consensus 984 ~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~eA~~~~~~~ 1021 (1041)
++++....|.....+..++.+|. ..|++++|...+++.
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 99999888888888888888888 888888666655543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00038 Score=54.36 Aligned_cols=56 Identities=18% Similarity=0.266 Sum_probs=50.5
Q ss_pred HHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCc
Q 001632 971 YMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRI 1026 (1041)
Q Consensus 971 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 1026 (1041)
+.+.|++++|+..|+++.+..|.+..+...++.+|.+.|++++|.++++++....-
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 35789999999999999999999999999999999999999999999999876543
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.032 Score=56.28 Aligned_cols=182 Identities=9% Similarity=0.049 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHH
Q 001632 786 AASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAY---MNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNII 862 (1041)
Q Consensus 786 A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 862 (1041)
+...|.....+.+.|++++|++.|+.+...... +.... -.++.+|-+.+++++|...+++.++....-....+...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 444555555566778888888888888875422 23332 35677888999999999999999886222112334444
Q ss_pred HHHHHH--cC---------------C---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001632 863 INVYAA--AG---------------L---YNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGI 922 (1041)
Q Consensus 863 ~~~~~~--~g---------------~---~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 922 (1041)
..+.+. .+ | ..+|++.|+++++. |-...-..+|...+..+.+.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH--
Confidence 444331 11 1 23444555555543 22233344554444444331
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001632 923 PPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIP---DLACYRTMLKGYMDHGYIEEGINLFEEVR 988 (1041)
Q Consensus 923 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 988 (1041)
- ...--.++..|.+.|.+..|+.-++.+++. .+- .....-.++.+|...|..++|......+.
T Consensus 174 -l-a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~-Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 -L-AKYELSVAEYYTKRGAYVAVVNRVEQMLRD-YPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -H-HHHHHHHHHHHHHcCchHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0 012236678899999999999999999874 332 34456677789999999999988876653
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.002 Score=69.19 Aligned_cols=119 Identities=11% Similarity=0.148 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 001632 217 DEIACGTMLCTYARWGNHKAMLTFYSAVKER--GIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLV 294 (1041)
Q Consensus 217 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 294 (1041)
+......+++.+....+.+.+..++.+.+.. ....-..|..++++.|.+.|..+.++.+++.-...|+-||.+++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3334444444444444445555554444433 11122234456666666666666666666666666666666666666
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 001632 295 ISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIK 335 (1041)
Q Consensus 295 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 335 (1041)
+..+.+.|++..|.++...|...+...+..|+..-+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666666666655544454554444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0071 Score=61.84 Aligned_cols=155 Identities=14% Similarity=0.058 Sum_probs=101.6
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHH----cCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-CCh
Q 001632 857 ISYNIIINVYAAAGLYNEVEKLIQAMQR----DGF-SPNSFTYLSLVQAYTEAAKYSEAEETINSMQK----QGIP-PSC 926 (1041)
Q Consensus 857 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p~~ 926 (1041)
..|..|.+.|.-.|+++.|+...+.-+. -|- ......+..|.++|.-.|+++.|.+.|+.... .|-. -..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3466677777778889998876655332 221 12345677788889999999999998887653 3311 122
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cCC----hH
Q 001632 927 THVNHLLSAFSKAGLMAEATRVYNESLAA----G-IIPDLACYRTMLKGYMDHGYIEEGINLFEEVRES--SES----DK 995 (1041)
Q Consensus 927 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----~~ 995 (1041)
....+|+..|.-..++++|++++.+-+.- + ..-....+.+|..++-..|..++|+.+.+...+. ... ..
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgel 355 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGEL 355 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhh
Confidence 35678888888888999999998875431 1 1123456778888888899999999888885542 111 22
Q ss_pred HHHHHHHHHHHhcCCh
Q 001632 996 FIMSAAVHLYRYAGKE 1011 (1041)
Q Consensus 996 ~~~~~l~~~~~~~g~~ 1011 (1041)
.....+.+.-...|..
T Consensus 356 Tar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 356 TARDNLSDLILELGQE 371 (639)
T ss_pred hhhhhhHHHHHHhCCC
Confidence 3455555555555543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.026 Score=61.24 Aligned_cols=55 Identities=13% Similarity=-0.007 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 891 SFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 891 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
..+...+..-+-+...+..|-++|..|-+. ..++......|+|++|..+.++..+
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 334444444444556666677777666542 2455666677778888777777654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0024 Score=52.88 Aligned_cols=76 Identities=20% Similarity=0.331 Sum_probs=43.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHcCCC--------HHHHHHHHHHHHHCCCCCCHhhHHH
Q 001632 258 FMLSSLHKKSYHRKVIDLWRQMMDKGV-APTDFTYTLVISSFVKGSL--------LEEALKTFNEMKSTGFAPEEVTYSQ 328 (1041)
Q Consensus 258 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~--------~~~A~~~~~~m~~~~~~p~~~~~~~ 328 (1041)
..|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++... +-..+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555677777777777777776 6677777777666655421 2234445555555555555555555
Q ss_pred HHHHH
Q 001632 329 LISLS 333 (1041)
Q Consensus 329 li~~~ 333 (1041)
++..+
T Consensus 110 vl~~L 114 (120)
T PF08579_consen 110 VLGSL 114 (120)
T ss_pred HHHHH
Confidence 55444
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0035 Score=65.06 Aligned_cols=131 Identities=10% Similarity=0.112 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001632 822 KAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAA-AGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQA 900 (1041)
Q Consensus 822 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 900 (1041)
.+|..++...-+.+..+.|..+|.+..+.+ .-+...|...+..-.. .++.+.|.++|+...+. ++.+...|...++-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 478889999999999999999999998642 1233445555555334 56777799999999887 77788889999998
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001632 901 YTEAAKYSEAEETINSMQKQGIPPSC---THVNHLLSAFSKAGLMAEATRVYNESLAA 955 (1041)
Q Consensus 901 ~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 955 (1041)
+.+.|+.+.|..+|++.+.. ++++. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999975 44443 48899999999999999999999999884
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0081 Score=67.72 Aligned_cols=136 Identities=15% Similarity=0.044 Sum_probs=70.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHHcC--------CHHHHHHHHH
Q 001632 815 LGLSLDEKAYMNLVSFYGKAG-----KTHEASLLFSEMQEEGIKPGL-ISYNIIINVYAAAG--------LYNEVEKLIQ 880 (1041)
Q Consensus 815 ~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g--------~~~~A~~~~~ 880 (1041)
...+.|...|..++.+..... ..+.|..+|++.++. .|+. ..|..+..+|.... +...+.+..+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 344667777777777654422 266788888888875 5554 33343333332211 1122222222
Q ss_pred HHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 881 AMQRD-GFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 881 ~m~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
+.... ..+.+...|..+...+...|++++|...++++++.+ |+...|..++.++...|+.++|++.|+++..
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 22221 122233445544444445566666666666666533 4555555666666666666666666666554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0011 Score=51.92 Aligned_cols=64 Identities=20% Similarity=0.237 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcc
Q 001632 927 THVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHG-YIEEGINLFEEVRESS 991 (1041)
Q Consensus 927 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 991 (1041)
..|..++..+...|++++|+..|++.++. .+.+...|..+..+|...| ++++|+..++++.+..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIEL-DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHH-STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 45555666666666666666666666553 1223445555555666666 4666666666655543
|
... |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00037 Score=44.07 Aligned_cols=26 Identities=27% Similarity=0.570 Sum_probs=11.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001632 859 YNIIINVYAAAGLYNEVEKLIQAMQR 884 (1041)
Q Consensus 859 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 884 (1041)
|++++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.01 Score=59.34 Aligned_cols=99 Identities=17% Similarity=0.122 Sum_probs=51.8
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCChhHHHH
Q 001632 855 GLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEA---AKYSEAEETINSMQKQGIPPSCTHVNH 931 (1041)
Q Consensus 855 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~ 931 (1041)
|...|-.|..+|...|+.+.|..-|.+..+. -.++...+..+..++..+ ....++..++++++..+ +.+......
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 4455666666666666666666666555553 233344444444443322 12345555666666543 334444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 001632 932 LLSAFSKAGLMAEATRVYNESLAA 955 (1041)
Q Consensus 932 l~~~~~~~g~~~~A~~~~~~~~~~ 955 (1041)
|...+...|++.+|...++.|++.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 555555666666666666666553
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.028 Score=54.21 Aligned_cols=152 Identities=8% Similarity=0.034 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 001632 803 DKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAM 882 (1041)
Q Consensus 803 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 882 (1041)
+..++.|++-. ..+-+.++.++-..|.+.-...++.+.+++..+-++.....|.+.-.+.||.+.|...|++.
T Consensus 166 ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 166 ESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred hhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 44555555433 34566788888888889999999999998755556677778888888999999999999988
Q ss_pred HHcCCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001632 883 QRDGFSPNSFTYLSLV-----QAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGI 957 (1041)
Q Consensus 883 ~~~g~~~~~~~~~~l~-----~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 957 (1041)
.+.....|..+++.++ ..|.-++++.+|...+.++.+.+ +.++...|+-+-++.-.|+..+|++.++.+++.
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~-- 315 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ-- 315 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 7654444544444433 45667788999999999999865 556667777777777799999999999999984
Q ss_pred CCCHHHH
Q 001632 958 IPDLACY 964 (1041)
Q Consensus 958 ~p~~~~~ 964 (1041)
.|.+.+.
T Consensus 316 ~P~~~l~ 322 (366)
T KOG2796|consen 316 DPRHYLH 322 (366)
T ss_pred CCccchh
Confidence 4544433
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.013 Score=66.06 Aligned_cols=140 Identities=10% Similarity=0.081 Sum_probs=99.7
Q ss_pred CCCCcccHHHHHHHHHH--cC---CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 001632 852 IKPGLISYNIIINVYAA--AG---LYNEVEKLIQAMQRDGFSPN-SFTYLSLVQAYTEA--------AKYSEAEETINSM 917 (1041)
Q Consensus 852 ~~p~~~~~~~l~~~~~~--~g---~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~ 917 (1041)
...|...|..++++... .+ +...|..+|++..+. .|+ ...+..+..+|... ++...+.+..+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 44566788888777543 32 377899999999984 455 44455554444322 1233444444444
Q ss_pred HHC-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChH
Q 001632 918 QKQ-GIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDK 995 (1041)
Q Consensus 918 ~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 995 (1041)
... ..+.+...|..++-.....|++++|...++++++. .|+...|..+...+...|+.++|+..++++....|.++
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 442 12345567777877777889999999999999984 57888899999999999999999999999998887776
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.37 Score=50.58 Aligned_cols=234 Identities=14% Similarity=0.036 Sum_probs=129.3
Q ss_pred HHHHHhhc-CCchhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHH
Q 001632 621 ILKLLLHT-AGGSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLV 699 (1041)
Q Consensus 621 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 699 (1041)
++++.+.- +-...+|..--..+...++...|..-...|..-.+..-..+...|.-..+-++....|++.... ...
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~----L~r 365 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQD----LKR 365 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhcccHHHHhhhHHHHHHH----HHH
Confidence 34444432 2233455555566677777777777777776666654444555555555666656656553310 000
Q ss_pred HHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCC-CCCChhhHHHHHH
Q 001632 700 LRSMIDAYAK---CGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDN-LDLDTVAYNTCIK 775 (1041)
Q Consensus 700 ~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~ 775 (1041)
-.+++..-+. .|+++.--+++-+-.. .=...|...++...+..-...|..+|-++.+.+ ..+++..+++++.
T Consensus 366 ~ys~~~s~~~s~~D~N~e~~~Ell~kr~~----k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E 441 (660)
T COG5107 366 KYSMGESESASKVDNNFEYSKELLLKRIN----KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIE 441 (660)
T ss_pred HHhhhhhhhhccccCCccccHHHHHHHHh----hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHH
Confidence 0111111111 2223222222211111 123456666776666666778888888888777 4677777777777
Q ss_pred HHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001632 776 AMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPG 855 (1041)
Q Consensus 776 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 855 (1041)
. ...|+...|..+|+.-...- +.+..-.+-.+..+..-++-+.|..+|+..+.+ +..+
T Consensus 442 ~--------------------~~~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~ 499 (660)
T COG5107 442 Y--------------------YATGDRATAYNIFELGLLKF-PDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKT 499 (660)
T ss_pred H--------------------HhcCCcchHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHh
Confidence 3 33455556666665554431 233333455666777777777888888755543 1112
Q ss_pred --cccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001632 856 --LISYNIIINVYAAAGLYNEVEKLIQAMQR 884 (1041)
Q Consensus 856 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 884 (1041)
...|..+|.--..-|+...+..+=+.|.+
T Consensus 500 q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 500 QLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred hhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 24566666666677777777766666665
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00036 Score=44.11 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=9.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 001632 186 YTILLRLYGQVGKIKLAEQTFLEML 210 (1041)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~~~ 210 (1041)
|+.+|++|++.|++++|.++|++|.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3333333333333333333333333
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0067 Score=54.91 Aligned_cols=92 Identities=10% Similarity=-0.010 Sum_probs=58.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCC
Q 001632 931 HLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGK 1010 (1041)
Q Consensus 931 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 1010 (1041)
..+.-+...|++++|+.+|+-+.-.+ .-+...|..|...+...+++++|+..|..+....+.|+.....++.+|...|+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 44444556677777777777655431 22455556666666666777777777777666666666666667777777777
Q ss_pred hhHHHHHHHHhhc
Q 001632 1011 EHEANDILDSMNS 1023 (1041)
Q Consensus 1011 ~~eA~~~~~~~~~ 1023 (1041)
.++|+..|....+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 7777776665554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0057 Score=62.49 Aligned_cols=291 Identities=15% Similarity=0.058 Sum_probs=163.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHhcc----CCCC-CChhhHHHHH
Q 001632 704 IDAYAKCGKAEDVYLLYKEATAQGCALDAV----AISILVNTLTNHGKHEQAEIIIHNSFQ----DNLD-LDTVAYNTCI 774 (1041)
Q Consensus 704 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~li 774 (1041)
..-+|+.|+.....++|+..++.|.. |.. +|..|-++|.-.+++.+|+++...-+. .|-+ -...+...+.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 34588999999999999999988744 433 445555666667777777776542110 0000 0000111122
Q ss_pred HHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001632 775 KAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKP 854 (1041)
Q Consensus 775 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 854 (1041)
..+--.|.+++|+....+ .++-|.++=+++.+ ...+..|.+.|...|+.-.. +.-.+.|-.|
T Consensus 103 NtlKv~G~fdeA~~cc~r--------hLd~areLgDrv~e------~RAlYNlgnvYhakGk~~g~----~~pee~g~f~ 164 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFR--------HLDFARELGDRVLE------SRALYNLGNVYHAKGKCTGL----EAPEEKGAFN 164 (639)
T ss_pred chhhhhcccchHHHHHHH--------HhHHHHHHhHHHhh------hHHHhhhhhhhhhcccccCC----CChhhccccc
Confidence 222223333444333333 23333333333332 12333455555555442110 0001112222
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHH----cCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC-C
Q 001632 855 GLISYNIIINVYAAAGLYNEVEKLIQAMQR----DGF-SPNSFTYLSLVQAYTEAAKYSEAEETINSMQK----QGIP-P 924 (1041)
Q Consensus 855 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p 924 (1041)
+.++ ..++.|++.|.+=++ .|- ..--..|..|.+.|.-.|+++.|+...+.=++ .|-. .
T Consensus 165 ~ev~-----------~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAa 233 (639)
T KOG1130|consen 165 AEVT-----------SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAA 233 (639)
T ss_pred HHHH-----------HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHH
Confidence 2111 112334444443221 110 01123567777888888999999887765443 3322 1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh------ccCC
Q 001632 925 SCTHVNHLLSAFSKAGLMAEATRVYNESL----AAGIIP-DLACYRTMLKGYMDHGYIEEGINLFEEVRE------SSES 993 (1041)
Q Consensus 925 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~ 993 (1041)
....+.+|+.++...|+++.|++.|+..+ +.|-+. .....-+|...|.-..++++|+.++.+=.. ....
T Consensus 234 eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriG 313 (639)
T KOG1130|consen 234 ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIG 313 (639)
T ss_pred HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 23478899999999999999999999854 333322 234455777888888889999999988221 1233
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhcc
Q 001632 994 DKFIMSAAVHLYRYAGKEHEANDILDSMNSV 1024 (1041)
Q Consensus 994 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 1024 (1041)
...++..|+.+|...|..++|+.+...-++.
T Consensus 314 e~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 314 ELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4567888999999999999999988876554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.25 Score=50.54 Aligned_cols=199 Identities=19% Similarity=0.131 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001632 821 EKAYMNLVSFYGKAGKTHEASLLFSEMQEE-GIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQ 899 (1041)
Q Consensus 821 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 899 (1041)
...+......+...+.+..+...+...... ........+..+...+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 445555666666677777777666666542 112233445555556666666777777777666532222 112222222
Q ss_pred -HHHhcCCHHHHHHHHHHHHHCCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 001632 900 -AYTEAAKYSEAEETINSMQKQGIPP----SCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIP-DLACYRTMLKGYMD 973 (1041)
Q Consensus 900 -~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 973 (1041)
.+...|++++|...+++.... .| ....+......+...++.++|+..+.+.... .+. ....+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKALKL-NPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-CcccchHHHHHhhHHHHH
Confidence 566777777777777776552 22 2223334444455667777777777777663 222 24556666666666
Q ss_pred cCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 001632 974 HGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 974 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 1023 (1041)
.+++++|...+..+....+.....+..+...+...|+.++|...+.+...
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777666655445555555555566667777766665543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.44 Score=49.17 Aligned_cols=226 Identities=12% Similarity=0.058 Sum_probs=145.3
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCccc--HHHHHHHHH---HcCC
Q 001632 798 RGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEE-GIKPGLIS--YNIIINVYA---AAGL 871 (1041)
Q Consensus 798 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~--~~~l~~~~~---~~g~ 871 (1041)
+.|..+.|+.+-+..-..- +.-.-.+.+.+...+..|+++.|+++++.-.+. -+.++..- -..|+.+-+ -..+
T Consensus 166 r~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 4556666666666655542 223446778889999999999999999877654 23455432 222332221 1234
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 001632 872 YNEVEKLIQAMQRDGFSPNSFTYL-SLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYN 950 (1041)
Q Consensus 872 ~~~A~~~~~~m~~~g~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 950 (1041)
...|...-.+..+ +.||-..-. .-..++.+.|+..++-.+++.+.+..-.|+ .+ ++..+.+.|+. ++.-++
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia--~lY~~ar~gdt--a~dRlk 316 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IA--LLYVRARSGDT--ALDRLK 316 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HH--HHHHHhcCCCc--HHHHHH
Confidence 5566666555554 567755433 334678999999999999999999653443 32 34445566764 222222
Q ss_pred HH--HHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhc-CChhHHHHHHHHhhccCc
Q 001632 951 ES--LAAGIIPD-LACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYA-GKEHEANDILDSMNSVRI 1026 (1041)
Q Consensus 951 ~~--~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~eA~~~~~~~~~~~~ 1026 (1041)
+. ++. ++|| .....++..+-...|++..|..-.+.+.. ..|...+|..|+++=... |+-.++...+.+-.....
T Consensus 317 Ra~~L~s-lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r-~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APr 394 (531)
T COG3898 317 RAKKLES-LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR-EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPR 394 (531)
T ss_pred HHHHHHh-cCccchHHHHHHHHHHHhccchHHHHHHHHHHhh-hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence 22 222 5664 55666777888899999999998888765 455567788888887765 999999998887766443
Q ss_pred -cchhcccc
Q 001632 1027 -PFMKNLEV 1034 (1041)
Q Consensus 1027 -~~~~~~~~ 1034 (1041)
|-|-..-+
T Consensus 395 dPaW~adg~ 403 (531)
T COG3898 395 DPAWTADGV 403 (531)
T ss_pred CCcccccCc
Confidence 44544433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.019 Score=50.01 Aligned_cols=90 Identities=19% Similarity=0.156 Sum_probs=49.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhHHHHHHHH
Q 001632 862 IINVYAAAGLYNEVEKLIQAMQRDGFSPN--SFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPS----CTHVNHLLSA 935 (1041)
Q Consensus 862 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~ 935 (1041)
+..++-..|+.++|+.+|++....|...+ ...+..+...+...|++++|+.++++..+.. |+ ......+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 34455566666666666666666554443 2234455556666666666666666666531 22 1222233445
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 001632 936 FSKAGLMAEATRVYNESL 953 (1041)
Q Consensus 936 ~~~~g~~~~A~~~~~~~~ 953 (1041)
+...|+.++|++.+-..+
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 556666666666665544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0058 Score=62.07 Aligned_cols=104 Identities=10% Similarity=0.058 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHH
Q 001632 891 SFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSC----THVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD---LAC 963 (1041)
Q Consensus 891 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~ 963 (1041)
...|..-+..+.+.|++++|...|+.+++. .|+. ..+..++.+|...|++++|+..|+.+++. .+-+ ...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-YPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCCcchhHH
Confidence 334555555456678999999999999985 3543 47778889999999999999999998874 2222 334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCChHHH
Q 001632 964 YRTMLKGYMDHGYIEEGINLFEEVRESSESDKFI 997 (1041)
Q Consensus 964 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 997 (1041)
+-.++..+...|++++|...|+++.+..|.+...
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 4445667778899999999999988888876643
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.11 Score=51.00 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=37.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCChH---HHHHHHHHHHHhcCChhHHHH
Q 001632 967 MLKGYMDHGYIEEGINLFEEVRESSESDK---FIMSAAVHLYRYAGKEHEAND 1016 (1041)
Q Consensus 967 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~eA~~ 1016 (1041)
++.-|.+.|.+..|+..++.+.+..|... ..+..++..|.+.|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 45668889999999999999888887765 456677888999998885543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.015 Score=59.08 Aligned_cols=97 Identities=16% Similarity=0.157 Sum_probs=65.4
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChhHHHHH
Q 001632 858 SYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPN---SFTYLSLVQAYTEAAKYSEAEETINSMQKQG--IPPSCTHVNHL 932 (1041)
Q Consensus 858 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l 932 (1041)
.|...+..+.+.|++++|+..|+.+++. .+-+ ...+.-++.+|...|++++|...|+.+++.- .+.....+..+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~-yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK-YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3444444445668888888888888775 2222 2355667777888888888888888888642 11123455556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 001632 933 LSAFSKAGLMAEATRVYNESLAA 955 (1041)
Q Consensus 933 ~~~~~~~g~~~~A~~~~~~~~~~ 955 (1041)
+.++...|+.++|.++|+++++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777888888888888888764
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.58 Score=49.22 Aligned_cols=131 Identities=11% Similarity=0.120 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001632 821 EKAYMNLVSFYGKAGKTHEASLLFSEMQEEG-IKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQ 899 (1041)
Q Consensus 821 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 899 (1041)
..+|..+++.--+..-++.|..+|-+..+.| ..+++..+++++..++ .|+...|.++|+--... ++.+..-.+..+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 3456666666666666777777777777776 4566677777776665 56667777777665443 3333333334444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 900 AYTEAAKYSEAEETINSMQKQGIPPS--CTHVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 900 ~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
-+..-++-+.|..+|+..++. +..+ ...|..+++-=..-|++..+..+=+++.+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 456667777777777765543 2222 34666666666666777666666666655
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.096 Score=50.67 Aligned_cols=135 Identities=11% Similarity=0.047 Sum_probs=84.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCChhHHHHHHH
Q 001632 860 NIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQ-----GIPPSCTHVNHLLS 934 (1041)
Q Consensus 860 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~ 934 (1041)
+.+++++.-.|.+.-.+.++.+.++..-+.+......|+..-.+.|+.+.|...++...+. ++.....+..+...
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 4566666666777777777777777655566666777777777778887777777765542 22223333344445
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChH
Q 001632 935 AFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDK 995 (1041)
Q Consensus 935 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 995 (1041)
.|.-++++..|...+.+.+.. -+.|+..-|.-.-.+.-.|+...|++.++.+.+..|...
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~-D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRM-DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred heecccchHHHHHHHhhcccc-CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 555566777777777776654 223455555444444456777778888777777666543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.79 Score=50.60 Aligned_cols=327 Identities=9% Similarity=0.028 Sum_probs=189.2
Q ss_pred ccCCHHHHHHHHHHhhc---CCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hc---
Q 001632 675 KHQKLKEAQDVFKAATV---SCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTL----TN--- 744 (1041)
Q Consensus 675 ~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~----~~--- 744 (1041)
..|+.+..+..|+.+.. ..-.+...|...+..-..++++.....+|+++.+. |. .-++....-| ..
T Consensus 126 ~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~-~~~~~~f~~f~~~l~~~~~ 201 (577)
T KOG1258|consen 126 NNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PL-HQLNRHFDRFKQLLNQNEE 201 (577)
T ss_pred cCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hh-hHhHHHHHHHHHHHhcCCh
Confidence 45666777777777552 22245567888888888889999999999998874 21 1222222211 11
Q ss_pred --cCCHHHHHHHHHHhccC----CCCCChhhHHHHHH-HHHhcCChhHHHHHHHHHH-----HHhccCChHHHHHHHHHH
Q 001632 745 --HGKHEQAEIIIHNSFQD----NLDLDTVAYNTCIK-AMLGAGKLHFAASIYERML-----VYGRGRKLDKALEMFNTA 812 (1041)
Q Consensus 745 --~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~A~~~~~~~ 812 (1041)
.-..+++..+-...... ......-.+...++ ....++.++.+..+..+.. +|-........+..|+..
T Consensus 202 ~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~ 281 (577)
T KOG1258|consen 202 KILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEG 281 (577)
T ss_pred hhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhh
Confidence 12233433333332211 01111122222222 1122334444444444433 455555566666666665
Q ss_pred HHCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 001632 813 RSLG-------LSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRD 885 (1041)
Q Consensus 813 ~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 885 (1041)
.+.. .+++..+|+..+..-.+.|+.+.+.-+|++..-. +.-=..-|--.++-....|+.+-|-.++....+-
T Consensus 282 IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i 360 (577)
T KOG1258|consen 282 IKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKI 360 (577)
T ss_pred ccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh
Confidence 5531 1245668999999999999999999999988642 0001123444444445558888888887766654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-HHHHHHHHHHhcCCHHHHHH---HHHHHHHCCCC-CC
Q 001632 886 GFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCT-HVNHLLSAFSKAGLMAEATR---VYNESLAAGII-PD 960 (1041)
Q Consensus 886 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~---~~~~~~~~~~~-p~ 960 (1041)
-.+....+-..-....-..|+++.|..+++.+.+.- |+.. .-.--+....+.|..+.+.. ++....+ |-. +.
T Consensus 361 ~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~~~~~ 437 (577)
T KOG1258|consen 361 HVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GKENNG 437 (577)
T ss_pred cCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-cccCcc
Confidence 222222222222222446789999999999999863 5544 33344556667888888883 3333222 111 11
Q ss_pred --HHHHHHHHHH-HHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcC
Q 001632 961 --LACYRTMLKG-YMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAG 1009 (1041)
Q Consensus 961 --~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 1009 (1041)
...+--..+. +.-.++.+.|..++.++.+..|++...+..+++.....+
T Consensus 438 i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 438 ILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 1112222222 234688999999999999999999999988888876655
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.62 Score=49.23 Aligned_cols=43 Identities=5% Similarity=-0.050 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHH
Q 001632 397 GLLIRIYGKLGLYEDAQKTFAETEQLG----LLSDEKTYLAMAQVHL 439 (1041)
Q Consensus 397 ~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~ 439 (1041)
+..++.+...|++.++..+++++...= ..-+..+|+.++-.+.
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmls 178 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLS 178 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHh
Confidence 344555566666666666666655432 2245555555444443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.015 Score=55.07 Aligned_cols=116 Identities=22% Similarity=0.285 Sum_probs=78.3
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 001632 166 ATEFFAWMKLQLSYRPCVVAYTILLRLYGQV-----GKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTF 240 (1041)
Q Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 240 (1041)
-...|+... +-..+-.+|..+|+.+.+. |.++=....+..|.+-|+..|..+|+.||+.+=+ |.+. -..+
T Consensus 33 ~~~~f~~~~---~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~ 107 (228)
T PF06239_consen 33 HEELFERAP---GQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNF 107 (228)
T ss_pred hHHHHHHHh---hccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccH
Confidence 355566543 2345777888888888653 6777777777888888888888888888887764 3322 1122
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCC
Q 001632 241 YSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSL 303 (1041)
Q Consensus 241 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 303 (1041)
|+.+-- -.-.+.+-|++++++|...|+-||..++..|++.+++.+.
T Consensus 108 fQ~~F~-----------------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 FQAEFM-----------------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHhc-----------------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 221111 1123445688889999999999999999999998877665
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.11 Score=51.18 Aligned_cols=174 Identities=14% Similarity=0.173 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc--ccHHH
Q 001632 786 AASIYERMLVYGRGRKLDKALEMFNTARSLGL--SLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGL--ISYNI 861 (1041)
Q Consensus 786 A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ 861 (1041)
+..+|+....+...|++.+|++.|+.+...-. +-.....-.++.++-+.|++++|...+++.++. -|+. ..+..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~ 82 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYAL 82 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHH
Confidence 34455555566778888888888888876521 122335556788888999999999999998876 3443 22333
Q ss_pred HHHHHHHcCC-------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhH
Q 001632 862 IINVYAAAGL-------------YNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTH 928 (1041)
Q Consensus 862 l~~~~~~~g~-------------~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 928 (1041)
.+.+.+..+. ..+|+.. +..++.-|-...-..+|...+..+.+. =...
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~ 143 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRNR----LAEH 143 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHH
Confidence 3333221111 1223333 333444455555556666555555431 0012
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHH
Q 001632 929 VNHLLSAFSKAGLMAEATRVYNESLAAGIIPDL---ACYRTMLKGYMDHGYIEEGI 981 (1041)
Q Consensus 929 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~ 981 (1041)
--.++..|.+.|.+..|..-++.+++. .+-.. ...-.|+.+|.+.|..+.|.
T Consensus 144 e~~ia~~Y~~~~~y~aA~~r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 144 ELYIARFYYKRGKYKAAIIRFQYVIEN-YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 345688999999999999999999985 33232 34566677888888877543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.071 Score=53.99 Aligned_cols=166 Identities=16% Similarity=0.171 Sum_probs=108.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCc---ccHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC----CHHH
Q 001632 823 AYMNLVSFYGKAGKTHEASLLFSEMQEE-GIKPGL---ISYNIIINVYAAAGLYNEVEKLIQAMQRDG-FSP----NSFT 893 (1041)
Q Consensus 823 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~----~~~~ 893 (1041)
.|-.+..++.+-.++.+++.+-..-... |..|.. ....+|.+++...+.++++++.|+...+.- -.. ....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444555555555666666665555443 333321 223456777777888999999988876521 111 2346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-
Q 001632 894 YLSLVQAYTEAAKYSEAEETINSMQK----QGIPPSC-----THVNHLLSAFSKAGLMAEATRVYNESLA----AGIIP- 959 (1041)
Q Consensus 894 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p- 959 (1041)
+..|...|....++++|.-+.....+ .++..=. .....+.-+|...|...+|.+.+++..+ .|-.+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 77888889999999999877776665 2221111 1234455677788999889888888643 34433
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001632 960 DLACYRTMLKGYMDHGYIEEGINLFEEVR 988 (1041)
Q Consensus 960 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 988 (1041)
-..+...+.+.|...|+.|.|..-|+++-
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 23456777888999999999999998854
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.019 Score=54.33 Aligned_cols=85 Identities=20% Similarity=0.324 Sum_probs=42.3
Q ss_pred CHhhHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHH
Q 001632 322 EEVTYSQLISLSIK-----HGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKN----------------ENYSKALSL 380 (1041)
Q Consensus 322 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------------~~~~~a~~~ 380 (1041)
|..+|..++..+.+ .|..+-....+..|.+-|+.-|..+|+.||+.+=+. .+-+-|.++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 45555555555442 244555555555555555555555555555554321 112334555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc
Q 001632 381 FSEMEKFKVAADEVIYGLLIRIYGKL 406 (1041)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~li~~~~~~ 406 (1041)
+++|...|+-||..++..|+..+++.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 55555555555555555555555443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0058 Score=48.43 Aligned_cols=59 Identities=20% Similarity=0.172 Sum_probs=25.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCh
Q 001632 935 AFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESD 994 (1041)
Q Consensus 935 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 994 (1041)
.|.+.+++++|+++++.+++. .+.++..+......+.+.|++++|...++++.+..|.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALEL-DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHh-CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 344444444444444444442 11233344444444444444444444444444444433
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.021 Score=59.33 Aligned_cols=97 Identities=13% Similarity=0.091 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 001632 927 THVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYR 1006 (1041)
Q Consensus 927 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 1006 (1041)
.++++|+-+|.+.+++.+|++.+.+.++.+ ++|.-..--=..+|...|+++.|+..|+++.+..|.|-.+...++.+-.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 467889999999999999999999999853 3355444445678899999999999999999999999999999998877
Q ss_pred hcCChhHH-HHHHHHhhcc
Q 001632 1007 YAGKEHEA-NDILDSMNSV 1024 (1041)
Q Consensus 1007 ~~g~~~eA-~~~~~~~~~~ 1024 (1041)
+..++++. .+++..|-..
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 76655554 6788877553
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.76 Score=47.52 Aligned_cols=82 Identities=15% Similarity=0.104 Sum_probs=36.4
Q ss_pred cCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 001632 676 HQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIII 755 (1041)
Q Consensus 676 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 755 (1041)
.|+.+.|++-|+.|......-..-+..|.-.-.+.|..+.|.+.-++....-.. -...+...+...|..|+++.|++++
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHH
Confidence 455555555555554322222222333333334445555555555544443211 2234444555555555555555555
Q ss_pred HHh
Q 001632 756 HNS 758 (1041)
Q Consensus 756 ~~~ 758 (1041)
+.-
T Consensus 212 d~~ 214 (531)
T COG3898 212 DAQ 214 (531)
T ss_pred HHH
Confidence 443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.35 Score=47.56 Aligned_cols=81 Identities=16% Similarity=0.148 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Q 001632 787 ASIYERMLVYGRGRKLDKALEMFNTARSLG--LSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIIN 864 (1041)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 864 (1041)
..++++...-.+.|++++|...|+.+...- -+-...+.-.++.++-+.+++++|...+++....-..-...-|...+.
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 334444444456677777777777776542 122344555667777788888888888888777522112234555555
Q ss_pred HHH
Q 001632 865 VYA 867 (1041)
Q Consensus 865 ~~~ 867 (1041)
+++
T Consensus 115 gLs 117 (254)
T COG4105 115 GLS 117 (254)
T ss_pred HHH
Confidence 554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0034 Score=49.79 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=54.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCc
Q 001632 968 LKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRI 1026 (1041)
Q Consensus 968 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 1026 (1041)
...|.+.+++++|+..++++....|.++..+...+.+|...|++++|.+.+++..+.+-
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35788999999999999999999999999999999999999999999999999876543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.91 Score=47.77 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=70.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001632 325 TYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIYG 404 (1041)
Q Consensus 325 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 404 (1041)
+.+..|.-+...|+...|.++-.+.. .||..-|...+.+++..++|++-.++-.. .+ .+.-|...+.++.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-kK-----sPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-KK-----SPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-CC-----CCCChHHHHHHHH
Confidence 44555666677777777777655542 35777777778888888888766664332 11 2355777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001632 405 KLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELM 454 (1041)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 454 (1041)
+.|...+|......+. +..-+..|.+.|++.+|.+...+.
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 7788777777765521 234566777777777776665444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.74 E-value=1.5 Score=49.59 Aligned_cols=112 Identities=15% Similarity=0.148 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 001632 893 TYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYM 972 (1041)
Q Consensus 893 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 972 (1041)
+.+--+.-+..-|+..+|.++-.+.. -||...|..-+.++...++|++-+++-+... .+.-|.-.+.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34444445667788888888776654 3788888888899999999988888776643 2444666888999
Q ss_pred hcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 001632 973 DHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMN 1022 (1041)
Q Consensus 973 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 1022 (1041)
+.|+.+||.+++-+... .. ..+.+|.+.|++.+|.++--+-+
T Consensus 756 ~~~n~~EA~KYiprv~~----l~----ekv~ay~~~~~~~eAad~A~~~r 797 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG----LQ----EKVKAYLRVGDVKEAADLAAEHR 797 (829)
T ss_pred hcccHHHHhhhhhccCC----hH----HHHHHHHHhccHHHHHHHHHHhc
Confidence 99999999998877533 22 46788888899988887755433
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0092 Score=63.44 Aligned_cols=63 Identities=8% Similarity=0.004 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 890 NSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCT----HVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 890 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
+...++.+..+|.+.|++++|+..|++.++. .|+.. .|.+++.+|...|+.++|++.++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555555555555552 23322 245555555555555555555555544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.41 Score=52.52 Aligned_cols=58 Identities=12% Similarity=0.105 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 001632 660 ILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATA 725 (1041)
Q Consensus 660 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 725 (1041)
..+..+...+...+.+...+.-|-++|.++-. ..+++......++|.+|..+-++..+
T Consensus 744 ~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 744 KAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcc
Confidence 33444555555555666666677777776541 13456666777777777777666544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.58 E-value=1.3 Score=46.93 Aligned_cols=347 Identities=13% Similarity=0.128 Sum_probs=172.8
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--H
Q 001632 155 VVLKEQKGWRQATEFFAWMKLQLSYRPCV----VAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCT--Y 228 (1041)
Q Consensus 155 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~ 228 (1041)
.+|.++++..+|.++|..+-+.....|.. ...+.++++|... +.+.....+.+..+. .| ...|-.+..+ +
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHH
Confidence 46889999999999999886544333332 3356677777654 466666666666554 22 2334444433 3
Q ss_pred HhcCChHHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCCCHHH
Q 001632 229 ARWGNHKAMLTFYSAVKER--GIVP------------STAVFNFMLSSLHKKSYHRKVIDLWRQMMDK----GVAPTDFT 290 (1041)
Q Consensus 229 ~~~g~~~~a~~~~~~m~~~--~~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~ 290 (1041)
-+.+.+.+|.+.+....+. +..+ |...=+..+..+...|.+.++..++++|... ...-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 4778999999988877665 3222 1122244556667788888888777777653 33366777
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHC---CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001632 291 YTLVISSFVKGSLLEEALKTFNEMKST---GFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSL 367 (1041)
Q Consensus 291 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 367 (1041)
|+.++-.+++ ..|-++.+. ++-|+ |.-+|-.|.+.-+ .++...-..+.|...-+..++..
T Consensus 170 yd~~vlmlsr--------SYfLEl~e~~s~dl~pd---yYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqh 232 (549)
T PF07079_consen 170 YDRAVLMLSR--------SYFLELKESMSSDLYPD---YYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQH 232 (549)
T ss_pred HHHHHHHHhH--------HHHHHHHHhcccccChH---HHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHH
Confidence 7776666643 233333222 22222 4444444433211 11111111223333333334333
Q ss_pred HHhc--CCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHh
Q 001632 368 YYKN--ENYSKALSLFSEMEKFKVAADEV-IYGLLIRIYGKLGLYEDAQKTFAETEQLGLL----SDEKTYLAMAQVHLT 440 (1041)
Q Consensus 368 ~~~~--~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~ 440 (1041)
..-. ....--.+++......-+.|+-. +...|+..+.+ +.+++..+-+.+....+. --..++..++....+
T Consensus 233 lfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk 310 (549)
T PF07079_consen 233 LFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVK 310 (549)
T ss_pred HHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3221 11222334444444433444422 22233333333 344444444333322111 023456667777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHH-------HHHHHHHHhc----CCHhHHHHHHHHHHHcCCCChhHHHHHHHH---
Q 001632 441 SRNVEKALDVIELMKSRNMWLSRFAY-------IVMLQCYVMK----EDLGSAEGTFQTLAKTGLPDAGSCNDMLNL--- 506 (1041)
Q Consensus 441 ~~~~~~A~~~~~~~~~~~~~~~~~~~-------~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--- 506 (1041)
.++...|...+..+.-- .|+...- ..+-+..+.. -+...-..+|......+......-.-|+.+
T Consensus 311 ~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~ 388 (549)
T PF07079_consen 311 QVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKH 388 (549)
T ss_pred HHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 77777777777666543 2222211 1122222211 122333444555444444333333333322
Q ss_pred HHhcCC-HHHHHHHHHHHHHc
Q 001632 507 YIKLDL-TEKAKGFIAHIRKD 526 (1041)
Q Consensus 507 ~~~~~~-~~~A~~~~~~~~~~ 526 (1041)
+-+.|. -++|..+++.+.+.
T Consensus 389 lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHh
Confidence 334454 77788888877764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.52 E-value=2.9 Score=50.12 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=18.8
Q ss_pred CCCChHHHHHHHHHHHhcC--ChhHHHHHHHHHHH
Q 001632 693 CKPGKLVLRSMIDAYAKCG--KAEDVYLLYKEATA 725 (1041)
Q Consensus 693 ~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~ 725 (1041)
..|+ ...-.++.+|.+.+ ..++|+....+...
T Consensus 787 ~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 787 RAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred cCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 3444 34445677777766 56666666665554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.034 Score=54.93 Aligned_cols=103 Identities=14% Similarity=0.138 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHH
Q 001632 893 TYLSLVQAYTEAAKYSEAEETINSMQKQGIPPS---CTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIP---DLACYRT 966 (1041)
Q Consensus 893 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~ 966 (1041)
.|+.-+. +.+.|++.+|...|...++.. |.+ ...+..|+..+...|++++|..+|..+.+. .+- -+..+--
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-YPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-CCCCCCChHHHHH
Confidence 4554443 456777888888888877753 222 235566778888888888888888877763 221 1344555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCChHHHH
Q 001632 967 MLKGYMDHGYIEEGINLFEEVRESSESDKFIM 998 (1041)
Q Consensus 967 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 998 (1041)
|.....+.|+.++|...|+++.+..|....+-
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 55666677788888888888777777766543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.075 Score=53.22 Aligned_cols=189 Identities=11% Similarity=0.115 Sum_probs=132.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCCH
Q 001632 832 GKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTY----LSLVQAYTEAAKY 907 (1041)
Q Consensus 832 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~----~~l~~~~~~~g~~ 907 (1041)
-..|++.+|...++++.+. +..|..+++.--++|.-.|+.+.-...++++.-. ..+|...| ..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4578899999999999886 4457788888889999999999888888888764 34454333 3334445689999
Q ss_pred HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChHHHHHH
Q 001632 908 SEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIP----DLACYRTMLKGYMDHGYIEEGINL 983 (1041)
Q Consensus 908 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~ 983 (1041)
++|++.-++..+.+ +.|+-....+.+.+...|+.+++.++..+-... .+- -...|-...--+.+.+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999999999865 567777888899999999999999998875432 221 122233333345577899999999
Q ss_pred HHH-HHh-ccCChHHHHH---HHHHHHHhcCChhHHHHHHHHhhcc
Q 001632 984 FEE-VRE-SSESDKFIMS---AAVHLYRYAGKEHEANDILDSMNSV 1024 (1041)
Q Consensus 984 ~~~-~~~-~~~~~~~~~~---~l~~~~~~~g~~~eA~~~~~~~~~~ 1024 (1041)
|++ +.. ....|.+... .+--+......+.+-.++-+.+-.+
T Consensus 270 yD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l~d~ 315 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSLTDK 315 (491)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhhcch
Confidence 998 554 4556664433 2333444555666665555555443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0095 Score=47.90 Aligned_cols=61 Identities=23% Similarity=0.358 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001632 928 HVNHLLSAFSKAGLMAEATRVYNESLAA----GII-PD-LACYRTMLKGYMDHGYIEEGINLFEEVR 988 (1041)
Q Consensus 928 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 988 (1041)
+++.++.+|...|++++|++.|++.++. |.. |+ ..++..+...|...|++++|+++++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666666666666666665532 100 11 2344444444555555555555555443
|
... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.48 Score=46.63 Aligned_cols=57 Identities=23% Similarity=0.298 Sum_probs=41.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCChHH---HHHHHHHHHHhcCChhHHHHHHHHhhc
Q 001632 967 MLKGYMDHGYIEEGINLFEEVRESSESDKF---IMSAAVHLYRYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 967 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~eA~~~~~~~~~ 1023 (1041)
+.+-|.+.|.+..|+.-++.+.+..+..+. .+..+..+|.+.|-.++|.+.-+-|..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 445677888888888888888887666554 455556778888888888776655543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.40 E-value=1.5 Score=45.60 Aligned_cols=102 Identities=11% Similarity=0.032 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 001632 822 KAYMNLVSFYGKAGKT---HEASLLFSEMQEEGIKPG-LISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSL 897 (1041)
Q Consensus 822 ~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 897 (1041)
.+...++.+|...+.. ++|..+++.+.+. .|+ +..+..-+..+.+.++.+++.+.+.+|... +.-....+...
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~ 161 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHH
Confidence 3566788888877764 4577777777665 234 344445577777789999999999999886 33233444444
Q ss_pred HHHHH--hcCCHHHHHHHHHHHHHCCCCCCh
Q 001632 898 VQAYT--EAAKYSEAEETINSMQKQGIPPSC 926 (1041)
Q Consensus 898 ~~~~~--~~g~~~~A~~~~~~~~~~~~~p~~ 926 (1041)
+..+- .......|...+..++-..+.|..
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 44331 223345666666666643344444
|
It is also involved in sporulation []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.65 Score=49.25 Aligned_cols=169 Identities=14% Similarity=0.017 Sum_probs=113.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC-cccHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001632 826 NLVSFYGKAGKTHEASLLFSEMQEEGIK--PG-LISYNIIINVYAA---AGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQ 899 (1041)
Q Consensus 826 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~--p~-~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 899 (1041)
.|+-.|-...+++...++.+.+...... ++ ...--..+-++.+ .|+.++|++++..+......++..+|..++.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555688889999999999999875110 11 1111234555666 8999999999999666667788888888887
Q ss_pred HHH----h-----cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCH----HHHHHHH----HHHHHCCC---CC
Q 001632 900 AYT----E-----AAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLM----AEATRVY----NESLAAGI---IP 959 (1041)
Q Consensus 900 ~~~----~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----~~A~~~~----~~~~~~~~---~p 959 (1041)
.|- . ....++|...|.+.-+. .|+...=.+++..+...|.. .+..++. ..+.+.|. ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 763 2 12467788888888774 47766555666666666642 2223333 11222332 23
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHH
Q 001632 960 DLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKF 996 (1041)
Q Consensus 960 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 996 (1041)
|-..+.+++.++.-.|++++|.+.++++....|+.-.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 4556678888888999999999999999887777643
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.42 Score=50.58 Aligned_cols=190 Identities=14% Similarity=0.131 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHcCCCCCccc---HHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---cCCHHH
Q 001632 839 EASLLFSEMQEEGIKPGLIS---YNIIINVYAAAGLYNEVEKLIQAMQRDG---FSPNSFTYLSLVQAYTE---AAKYSE 909 (1041)
Q Consensus 839 ~A~~~~~~m~~~g~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~l~~~~~~---~g~~~~ 909 (1041)
+..+.+.+|..+=-.|+..+ ...++-.|....+++.-+++.+.+...- +.-....--.++-++-+ .|+.++
T Consensus 121 ~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~ 200 (374)
T PF13281_consen 121 ELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREK 200 (374)
T ss_pred HHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHH
Confidence 33444555554411233333 3345557999999999999999998741 11122223344556667 899999
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHH----hc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hH-
Q 001632 910 AEETINSMQKQGIPPSCTHVNHLLSAFS----KA-----GLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGY-IE- 978 (1041)
Q Consensus 910 A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~- 978 (1041)
|+.++..++...-.+++.+|..++..|- .. ...++|+..|.+.-+ +.||...--.++..+.-.|. ++
T Consensus 201 Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~ 278 (374)
T PF13281_consen 201 ALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFET 278 (374)
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccc
Confidence 9999999776556788888888886653 22 247899999999876 34654433333333333333 22
Q ss_pred --HHHHHH----HHH-Hh---ccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCccchh
Q 001632 979 --EGINLF----EEV-RE---SSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRIPFMK 1030 (1041)
Q Consensus 979 --~A~~~~----~~~-~~---~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~ 1030 (1041)
+..++- ..+ .+ ....|.-.+.+++.+..-.|+.++|.+..++|.....|.|-
T Consensus 279 ~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 279 SEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred hHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 222222 111 11 12345666778888999999999999999999988877764
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0082 Score=48.29 Aligned_cols=61 Identities=25% Similarity=0.417 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC---CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001632 893 TYLSLVQAYTEAAKYSEAEETINSMQKQ--GIP---PS-CTHVNHLLSAFSKAGLMAEATRVYNESL 953 (1041)
Q Consensus 893 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 953 (1041)
+++.+..+|...|++++|+..|++.++. ... |+ ..+++.++.+|...|++++|++++++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555555555431 011 11 1234455555555555555555555543
|
... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.055 Score=46.03 Aligned_cols=102 Identities=20% Similarity=0.109 Sum_probs=68.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHhcC
Q 001632 899 QAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTML---KGYMDHG 975 (1041)
Q Consensus 899 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~---~~~~~~g 975 (1041)
-+....|+.+.|++.|.+.+.. .|.....||+...+|.-+|+.++|++-+++.++..-+.......+.+ -.|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4567888888888888888875 35566788888888888888888888888887742222332222322 2355678
Q ss_pred ChHHHHHHHHHHHhccCChHHHHHHHHH
Q 001632 976 YIEEGINLFEEVRESSESDKFIMSAAVH 1003 (1041)
Q Consensus 976 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 1003 (1041)
+-+.|..-|+.+.+... ++....|+.
T Consensus 130 ~dd~AR~DFe~AA~LGS--~FAr~QLV~ 155 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS--KFAREQLVE 155 (175)
T ss_pred chHHHHHhHHHHHHhCC--HHHHHHHHh
Confidence 88888888888766443 334444443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.017 Score=61.58 Aligned_cols=107 Identities=8% Similarity=0.008 Sum_probs=81.5
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHH
Q 001632 923 PPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDL----ACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIM 998 (1041)
Q Consensus 923 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 998 (1041)
+.+...+++++.+|.+.|++++|+..|++.++ +.|+. .+|..+..+|...|++++|+..++++.+..++..
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f--- 146 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKF--- 146 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhH---
Confidence 44566899999999999999999999999998 56663 3589999999999999999999999988533222
Q ss_pred HHHHH--HHHhcCChhHHHHHHHHhhccCccchhcccc
Q 001632 999 SAAVH--LYRYAGKEHEANDILDSMNSVRIPFMKNLEV 1034 (1041)
Q Consensus 999 ~~l~~--~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~ 1034 (1041)
..+.. -+....+.++..++++.+..-|.++......
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~~~g~~~~~ 184 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGGEDIGSSFRR 184 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhCCccCCchhh
Confidence 11111 1333455678889999999988866544433
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.33 Score=46.69 Aligned_cols=56 Identities=21% Similarity=0.366 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 001632 894 YLSLVQAYTEAAKYSEAEETINSMQKQ---GIPPSCTHVNHLLSAFSKAGLMAEATRVYN 950 (1041)
Q Consensus 894 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 950 (1041)
|...|-+|....++..|+..++.--+. .-+.+..+...|+.+| ..||.+++.+++.
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 445555566666777777777664431 1123344566666666 5566665555443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.35 Score=44.67 Aligned_cols=69 Identities=29% Similarity=0.316 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 001632 894 YLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESL-----AAGIIPDLAC 963 (1041)
Q Consensus 894 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~ 963 (1041)
...++..+...|++++|...++.++..+ |-+...|..++.+|...|+..+|+++|+++. +.|+.|++.+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3344555666777777777777777653 4455567777777777777777777776653 2366665544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.14 Score=47.34 Aligned_cols=126 Identities=13% Similarity=0.197 Sum_probs=90.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---HHH
Q 001632 899 QAYTEAAKYSEAEETINSMQKQGIPPSC-----THVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTM---LKG 970 (1041)
Q Consensus 899 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l---~~~ 970 (1041)
+-+...|++++|..-|.++++. +++.. ..|.+.+.++.+.+.++.|++-+.+.++. .| ..-.+| ..+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~p--ty~kAl~RRAea 177 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NP--TYEKALERRAEA 177 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--Cc--hhHHHHHHHHHH
Confidence 4567889999999999999985 34332 35666777889999999999999999874 23 222333 346
Q ss_pred HHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHH--HHHHHHhhccCccch
Q 001632 971 YMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEA--NDILDSMNSVRIPFM 1029 (1041)
Q Consensus 971 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA--~~~~~~~~~~~~~~~ 1029 (1041)
|.+..++++|+.-|+++.+..|........++.+=-......++ .+++.+++..|-.++
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlGN~iL 238 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLGNFIL 238 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 78889999999999999999998887777777664433333333 356667766666444
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.19 Score=46.39 Aligned_cols=61 Identities=26% Similarity=0.384 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 001632 928 HVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRE 989 (1041)
Q Consensus 928 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 989 (1041)
....++..+...|++++|++.++.++.. -|-|...|..++.+|...|+..+|+..|+++..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4456667777888888888888888874 344777888888888888888888888888654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.22 Score=50.11 Aligned_cols=152 Identities=11% Similarity=0.035 Sum_probs=114.9
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccH----HHHHHHHHHcCCHH
Q 001632 798 RGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISY----NIIINVYAAAGLYN 873 (1041)
Q Consensus 798 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~l~~~~~~~g~~~ 873 (1041)
-.|++.+|...++++++. .|.|...++--=.+|.-.|+...-...++++.-. ..||...| .++.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 478888888889998874 4778888887788888999999999999998765 34565333 34455667899999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 001632 874 EVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQ---GIPPSCTHVNHLLSAFSKAGLMAEATRVYN 950 (1041)
Q Consensus 874 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 950 (1041)
+|++.-++..+- .+.|...-.++..++...|+..++.++..+-... +----...|-+.+-.+...+.++.|+++|.
T Consensus 193 dAEk~A~ralqi-N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQI-NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccC-CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 999999998875 3567778888888999999999999987765431 100111235556667777899999999998
Q ss_pred HH
Q 001632 951 ES 952 (1041)
Q Consensus 951 ~~ 952 (1041)
.=
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 73
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.04 E-value=3.4 Score=46.18 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=32.9
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 001632 694 KPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHN 757 (1041)
Q Consensus 694 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 757 (1041)
|.+....-.|.+++...|.-++|.+.|-+... | ...+..|...+++.+|.++.++
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666777777777777777666544332 1 1234556666666666666544
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.81 Score=44.15 Aligned_cols=144 Identities=15% Similarity=0.110 Sum_probs=83.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHH
Q 001632 826 NLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFS--PN---SFTYLSLVQA 900 (1041)
Q Consensus 826 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~--~~---~~~~~~l~~~ 900 (1041)
--...|..+|..+.|--.+++.-+. ....++++|+++|++...-=.. -+ ...+.....+
T Consensus 96 KAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 96 KASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence 3344566666666655555544331 2345667777777765542000 11 2234444566
Q ss_pred HHhcCCHHHHHHHHHHHHH----CCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC-CHHHHHHHHHHHH
Q 001632 901 YTEAAKYSEAEETINSMQK----QGIPPSC-THVNHLLSAFSKAGLMAEATRVYNESLAAGI--IP-DLACYRTMLKGYM 972 (1041)
Q Consensus 901 ~~~~g~~~~A~~~~~~~~~----~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p-~~~~~~~l~~~~~ 972 (1041)
+.+..++++|-..+.+-.. ..--++. ..|-..|-.|....|+..|++.+++--+.+- .+ |..+...|+.+|
T Consensus 160 lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay- 238 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY- 238 (308)
T ss_pred hhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-
Confidence 7777777777655544331 1112332 3466677777788899999999988554321 12 455666777776
Q ss_pred hcCChHHHHHHHHH
Q 001632 973 DHGYIEEGINLFEE 986 (1041)
Q Consensus 973 ~~g~~~~A~~~~~~ 986 (1041)
..||.|++..++..
T Consensus 239 d~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 239 DEGDIEEIKKVLSS 252 (308)
T ss_pred ccCCHHHHHHHHcC
Confidence 77888888877765
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.24 Score=49.44 Aligned_cols=148 Identities=13% Similarity=0.089 Sum_probs=82.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCH
Q 001632 863 INVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLM 942 (1041)
Q Consensus 863 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 942 (1041)
.......|+..+|..+|+..... .+-+......++.+|...|+++.|..++..+-...-.........-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~-~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQA-APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHh-CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 33455677777777777776664 23334555566677777777777777777655422112222222334455555544
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cCChHHHHHHHHHHHHhcCChhH
Q 001632 943 AEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRES--SESDKFIMSAAVHLYRYAGKEHE 1013 (1041)
Q Consensus 943 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~e 1013 (1041)
.+...+-.++-. -+-|...--.+...+...|+.++|...+-.+... .-.|....-.++.++...|..+.
T Consensus 220 ~~~~~l~~~~aa--dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 220 PEIQDLQRRLAA--DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CCHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 444444444332 1225555555666666777777777666665443 23344566666777666664333
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.015 Score=40.22 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHH
Q 001632 963 CYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVH 1003 (1041)
Q Consensus 963 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 1003 (1041)
++..+...|.+.|++++|+.+|+++.+..|.|+.++..++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 45566677777777777777777777777777776666553
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.0074 Score=38.75 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=29.4
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcCChhHHHH
Q 001632 984 FEEVRESSESDKFIMSAAVHLYRYAGKEHEAND 1016 (1041)
Q Consensus 984 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~ 1016 (1041)
|+++++..|.|+.++..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 677888899999999999999999999999863
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.23 Score=42.42 Aligned_cols=92 Identities=15% Similarity=0.074 Sum_probs=68.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhHHHHHHHHHHhcCC
Q 001632 865 VYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPS---CTHVNHLLSAFSKAGL 941 (1041)
Q Consensus 865 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~ 941 (1041)
+++..|+.+.|++.|.+.+.. .+-+...||.-.+++.-+|+.++|+.-+++.++..-+.. +..|...+..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 456788888888888888775 455677788888888888888888888888887422222 2345566677888888
Q ss_pred HHHHHHHHHHHHHCCC
Q 001632 942 MAEATRVYNESLAAGI 957 (1041)
Q Consensus 942 ~~~A~~~~~~~~~~~~ 957 (1041)
.+.|..-|+..-+.|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 8888888888776653
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.21 Score=53.68 Aligned_cols=161 Identities=9% Similarity=0.037 Sum_probs=114.3
Q ss_pred ccH--HHHHHHHHHc-----CCHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 001632 857 ISY--NIIINVYAAA-----GLYNEVEKLIQAMQRD-GFSPN-SFTYLSLVQAYTE---------AAKYSEAEETINSMQ 918 (1041)
Q Consensus 857 ~~~--~~l~~~~~~~-----g~~~~A~~~~~~m~~~-g~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~ 918 (1041)
..| ..++++.... ...+.|+.+|.+.... .+.|+ ...|..+...+.. .....+|.++.+..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 345 4555554432 2357788899998832 24554 4456555554432 234567888888888
Q ss_pred HCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChH--
Q 001632 919 KQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD-LACYRTMLKGYMDHGYIEEGINLFEEVRESSESDK-- 995 (1041)
Q Consensus 919 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 995 (1041)
+.+ +.|......++.++...|+.+.|...|++... +.|| ..+|-.....+.-+|+.++|.+.++++.+..|--.
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 876 66777888888888999999999999999988 4665 55676677777889999999999999888766553
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHh
Q 001632 996 FIMSAAVHLYRYAGKEHEANDILDSM 1021 (1041)
Q Consensus 996 ~~~~~l~~~~~~~g~~~eA~~~~~~~ 1021 (1041)
.+....++.|+.. ..++|.+++-+-
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~~~ 433 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHhhc
Confidence 5556666688874 467888777553
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.72 E-value=3.4 Score=43.62 Aligned_cols=111 Identities=20% Similarity=0.168 Sum_probs=84.5
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 001632 857 ISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAF 936 (1041)
Q Consensus 857 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 936 (1041)
.+.+.-+.-+...|+...|.++-++. -.||..-|-..+.+++..+++++-.++... ..++..|...+.++
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 45666677778889888888776655 237777888889999999999887766432 23457888899999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001632 937 SKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEV 987 (1041)
Q Consensus 937 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 987 (1041)
.+.|...+|..++.++ ++ ..-+..|.++|++.+|.+..-+.
T Consensus 248 ~~~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999999888872 22 34567888999999998877663
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.59 E-value=1.8 Score=41.56 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=28.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---H-HHHH-hc-CChHHHHHHHHHHHhccCC
Q 001632 936 FSKAGLMAEATRVYNESLAAGIIPDLACYRTM---L-KGYM-DH-GYIEEGINLFEEVRESSES 993 (1041)
Q Consensus 936 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l---~-~~~~-~~-g~~~~A~~~~~~~~~~~~~ 993 (1041)
-...|++.+|+++|++.....+..+..-|..- + .+++ -+ .|.-.+...+++..+..|.
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 34456777777777776554344333323211 1 1122 12 4555555556665555554
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.31 Score=43.40 Aligned_cols=52 Identities=21% Similarity=0.297 Sum_probs=23.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 902 TEAAKYSEAEETINSMQKQGIPPS---CTHVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 902 ~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
.+.|++++|.+.|+.+... .|.+ ....-.|+.+|.+.|++++|...+++.++
T Consensus 21 l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4445555555555555442 1111 12333444555555555555555555444
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.24 Score=51.79 Aligned_cols=97 Identities=19% Similarity=0.211 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 001632 892 FTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDL-ACYRTMLKG 970 (1041)
Q Consensus 892 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~ 970 (1041)
..++.|...|.+.+++.+|++..+..++.+ ++|+....--+.+|...|+++.|+..|+++++ +.|+. .+-+-++..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 456667777889999999999999999875 67777888889999999999999999999988 46644 444444433
Q ss_pred HHhcC-ChHHHHHHHHHHHhcc
Q 001632 971 YMDHG-YIEEGINLFEEVRESS 991 (1041)
Q Consensus 971 ~~~~g-~~~~A~~~~~~~~~~~ 991 (1041)
-.+.. ..++..++|..|....
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 33322 3344467777766543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.48 E-value=2.5 Score=50.64 Aligned_cols=89 Identities=20% Similarity=0.168 Sum_probs=58.1
Q ss_pred HHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001632 776 AMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKA--YMNLVSFYGKAGKTHEASLLFSEMQEEGIK 853 (1041)
Q Consensus 776 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 853 (1041)
.|...|+.++|++.|+. +|+|.+|+.+..++.. ..+... -..|+.-+..++++-+|-++..+....
T Consensus 961 ~Ye~~GklekAl~a~~~------~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--- 1028 (1265)
T KOG1920|consen 961 MYERCGKLEKALKAYKE------CGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--- 1028 (1265)
T ss_pred HHHHhccHHHHHHHHHH------hccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---
Confidence 35556777777766554 6788888888776654 233333 256888888899998988888877653
Q ss_pred CCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 001632 854 PGLISYNIIINVYAAAGLYNEVEKLIQA 881 (1041)
Q Consensus 854 p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 881 (1041)
..-.+..|++...+++|+.+...
T Consensus 1029 -----~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1029 -----PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred -----HHHHHHHHhhHhHHHHHHHHHHh
Confidence 12344556666667777665443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.75 Score=51.75 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 825 MNLVSFYGKAGKTHEASLLFSEMQE 849 (1041)
Q Consensus 825 ~~l~~~~~~~g~~~~A~~~~~~m~~ 849 (1041)
..+++..+=.|+-+.+++.+.+..+
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~ 216 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASK 216 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhc
Confidence 3344555556666666666666544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.71 Score=42.20 Aligned_cols=87 Identities=9% Similarity=-0.020 Sum_probs=49.4
Q ss_pred HhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHH
Q 001632 796 YGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEV 875 (1041)
Q Consensus 796 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 875 (1041)
+...|++++|..+|.-+.-.+ +-|..-|..|..++-..+++++|...|......+. -|+..+--+..+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 345566666666666665544 23444555666666666666666666665544322 2333344455666666666666
Q ss_pred HHHHHHHHH
Q 001632 876 EKLIQAMQR 884 (1041)
Q Consensus 876 ~~~~~~m~~ 884 (1041)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666666555
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.40 E-value=5.2 Score=43.64 Aligned_cols=64 Identities=14% Similarity=0.085 Sum_probs=39.8
Q ss_pred cCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHH------HHHHHhhccCc-cchhccccccc
Q 001632 974 HGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEAN------DILDSMNSVRI-PFMKNLEVGSK 1037 (1041)
Q Consensus 974 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~------~~~~~~~~~~~-~~~~~~~~~~~ 1037 (1041)
.++.+++...|.++.+..|.....+..++..+...-..+... ....+....-+ .|++.+..|++
T Consensus 271 ~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 271 SESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred cccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 378888999999988887877777777777665532222211 12333333333 37777777765
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.38 E-value=1.6 Score=37.73 Aligned_cols=137 Identities=15% Similarity=0.231 Sum_probs=70.5
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh---HHHHHHHHHHhcCCHH
Q 001632 867 AAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCT---HVNHLLSAFSKAGLMA 943 (1041)
Q Consensus 867 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~ 943 (1041)
.-.|..++..++..+..... +..-+|=+|--....-+-+-..++++.+-+ --|.. -....+.+|.+.|...
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~~s 86 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNKLS 86 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcchH
Confidence 34566777777777766541 333333333222222222333344443333 12222 2334455555544332
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 001632 944 EATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 944 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 1023 (1041)
...+..+..+...|+-+.-.+++..+.....+++..+..++.+|.+.|+..+|.+++.+.-+
T Consensus 87 ------------------e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 87 ------------------EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp ------------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 22233445566777777777777776655677888888999999999999999999999888
Q ss_pred cCcc
Q 001632 1024 VRIP 1027 (1041)
Q Consensus 1024 ~~~~ 1027 (1041)
.|+.
T Consensus 149 kG~k 152 (161)
T PF09205_consen 149 KGLK 152 (161)
T ss_dssp TT-H
T ss_pred hchH
Confidence 8874
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=1.2 Score=48.04 Aligned_cols=148 Identities=10% Similarity=0.071 Sum_probs=107.4
Q ss_pred CHHHHHHHHHHHHHc-CCCCCc-ccHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 001632 836 KTHEASLLFSEMQEE-GIKPGL-ISYNIIINVYAAA---------GLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEA 904 (1041)
Q Consensus 836 ~~~~A~~~~~~m~~~-g~~p~~-~~~~~l~~~~~~~---------g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 904 (1041)
..+.|..+|.+.... .+.|+. ..|..+..++... .+..+|.++.++..+. -+.|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel-d~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI-TTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhh
Confidence 467899999999833 346664 4565665555432 2356777888888776 366888888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHH
Q 001632 905 AKYSEAEETINSMQKQGIPPSC-THVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD---LACYRTMLKGYMDHGYIEEG 980 (1041)
Q Consensus 905 g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A 980 (1041)
|+++.|...|++....+ ||. .+|...+.....+|+.++|.+.+++.++ ..|- .......+..|+.+ -.++|
T Consensus 352 ~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~-~~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPN-PLKNN 426 (458)
T ss_pred cchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCC-chhhh
Confidence 99999999999999954 664 4788888888899999999999999877 4553 23333334456655 47888
Q ss_pred HHHHHHHHh
Q 001632 981 INLFEEVRE 989 (1041)
Q Consensus 981 ~~~~~~~~~ 989 (1041)
+.+|-+-.+
T Consensus 427 ~~~~~~~~~ 435 (458)
T PRK11906 427 IKLYYKETE 435 (458)
T ss_pred HHHHhhccc
Confidence 888877544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.27 E-value=7.7 Score=44.86 Aligned_cols=175 Identities=16% Similarity=0.111 Sum_probs=80.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH----HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001632 187 TILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTM----LCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSS 262 (1041)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 262 (1041)
..-++.+.+...++.|..+...- + .+..+...+ .+-+.+.|++++|...|-+-...- .| ..+|.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHHHH
Confidence 34455555555555555543321 1 122222222 222335566666665555433210 11 223444
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHH
Q 001632 263 LHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEA 342 (1041)
Q Consensus 263 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 342 (1041)
|........-..+++.+.+.|.. +...-+.|+..|.+.++.+.-.+..+... .|.. ..-....+..+.+.+-+++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 44444555555556666666543 23344566666666666666555544433 2211 01122344445555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001632 343 LSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEM 384 (1041)
Q Consensus 343 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 384 (1041)
..+-..... .......++ -..+++++|.+.+..+
T Consensus 483 ~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 555444322 122233332 2345666666666554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.29 Score=48.56 Aligned_cols=95 Identities=20% Similarity=0.318 Sum_probs=59.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChhHHHHHH
Q 001632 859 YNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFT---YLSLVQAYTEAAKYSEAEETINSMQKQG--IPPSCTHVNHLL 933 (1041)
Q Consensus 859 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~ 933 (1041)
|+..+.. .+.|++.+|.+.|...++. .+-+..+ +-=|+.++...|++++|..+|..+.+.- .+.-+..+--|+
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~-YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKK-YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHc-CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 5554444 3566677777777777764 3322222 2225667777778777777777777621 122234566667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 001632 934 SAFSKAGLMAEATRVYNESLAA 955 (1041)
Q Consensus 934 ~~~~~~g~~~~A~~~~~~~~~~ 955 (1041)
....+.|+.++|..+++++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777777778888888777765
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.22 E-value=6.5 Score=43.77 Aligned_cols=99 Identities=10% Similarity=-0.048 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001632 463 RFAYIVMLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIY 542 (1041)
Q Consensus 463 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 542 (1041)
..+|..-+......|+.+.+.-+|+.+.-....-...|-..+......|+.+-|..++....+..++-.+.+...-....
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 34666666666666777766666666654333344455555555555566666666666555543332222222222223
Q ss_pred HhcCChhhHHHHHHHHhhC
Q 001632 543 CKEGMVTDAEQFVEEMGKN 561 (1041)
Q Consensus 543 ~~~g~~~~A~~~~~~m~~~ 561 (1041)
-..|++..|..+++.+.+.
T Consensus 377 e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HhhccHHHHHHHHHHHHhh
Confidence 3456777777777766655
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.83 E-value=2 Score=44.04 Aligned_cols=225 Identities=14% Similarity=0.077 Sum_probs=138.4
Q ss_pred hccCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC---CcccHHHHHHHHHHc
Q 001632 797 GRGRKLDKALEMFNTARSLG--LSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEE--GIKP---GLISYNIIINVYAAA 869 (1041)
Q Consensus 797 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~p---~~~~~~~l~~~~~~~ 869 (1041)
....+.++|+..|.+.+.+- ...-..++..+..+.+..|.++++...--.-++. .... -...|..+.+++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666766666665431 1112346667788888888888776542211111 0011 124556667777777
Q ss_pred CCHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC--ChhHHHHHHHHHHhcC
Q 001632 870 GLYNEVEKLIQAMQRD-GFSPN---SFTYLSLVQAYTEAAKYSEAEETINSMQKQGI---PP--SCTHVNHLLSAFSKAG 940 (1041)
Q Consensus 870 g~~~~A~~~~~~m~~~-g~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p--~~~~~~~l~~~~~~~g 940 (1041)
-++.+++.+-+.-... |..|. -....++..++...+.++++++.|+...+.-. .| ...++..|...|....
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 7777777776655442 22221 12344577788888999999999999886321 12 1247889999999999
Q ss_pred CHHHHHHHHHHHHHC----CCCCCHHHHHHH-----HHHHHhcCChHHHHHHHHHHHhc--cCChH----HHHHHHHHHH
Q 001632 941 LMAEATRVYNESLAA----GIIPDLACYRTM-----LKGYMDHGYIEEGINLFEEVRES--SESDK----FIMSAAVHLY 1005 (1041)
Q Consensus 941 ~~~~A~~~~~~~~~~----~~~p~~~~~~~l-----~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~l~~~~ 1005 (1041)
|+++|.-+..++.+. ++..=...|+.+ .-++...|....|.+.-+++-+. ...|. ..+-.++++|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 999999888876542 222212344433 33556678887888777775432 22332 3355678999
Q ss_pred HhcCChhHHHHHHHHh
Q 001632 1006 RYAGKEHEANDILDSM 1021 (1041)
Q Consensus 1006 ~~~g~~~eA~~~~~~~ 1021 (1041)
...|+.+.|..-++..
T Consensus 257 R~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcccHhHHHHHHHHH
Confidence 9999887776655543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.74 E-value=4 Score=38.83 Aligned_cols=197 Identities=17% Similarity=0.164 Sum_probs=114.6
Q ss_pred ChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHH
Q 001632 782 KLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNI 861 (1041)
Q Consensus 782 ~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 861 (1041)
+-+.|.-.|++...|...|-+.-|+--|.+..... +.-..+||-|.-.+...|+++.|.+.|+...+....-+-...|.
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR 139 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 139 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence 34567777777777888888888888888877754 33456888888888999999999999999988632212222222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHH-HHHHHhc
Q 001632 862 IINVYAAAGLYNEVEKLIQAMQRDG-FSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHL-LSAFSKA 939 (1041)
Q Consensus 862 l~~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~ 939 (1041)
-|+.| -.|+++-|.+-+.+.-+.. -.|=...|..++ ...-++.+|..-+.+=-+ ..|..-|... +..| .
T Consensus 140 gi~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~y--L 210 (297)
T COG4785 140 GIALY-YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFY--L 210 (297)
T ss_pred ceeee-ecCchHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHH--H
Confidence 22222 3688888877666654431 222233333332 234566677655543332 2333444322 2233 2
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 001632 940 GLMAEATRVYNESLAAGIIPD-------LACYRTMLKGYMDHGYIEEGINLFEEVRES 990 (1041)
Q Consensus 940 g~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 990 (1041)
|++. -+.+++++.+ +-..+ ..||--+..-+...|+.++|..+|+-+...
T Consensus 211 gkiS-~e~l~~~~~a-~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 211 GKIS-EETLMERLKA-DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hhcc-HHHHHHHHHh-hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 2221 1222333322 22212 234555666777889999999999887653
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.71 E-value=1.2 Score=50.04 Aligned_cols=115 Identities=19% Similarity=0.097 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCC--CC-CChhHHHHHHHHHHhcCCHHHH
Q 001632 870 GLYNEVEKLIQAMQRDGFSPNSFTYLS-LVQAYTEAAKYSEAEETINSMQKQG--IP-PSCTHVNHLLSAFSKAGLMAEA 945 (1041)
Q Consensus 870 g~~~~A~~~~~~m~~~g~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~--~~-p~~~~~~~l~~~~~~~g~~~~A 945 (1041)
.+.+.|.++++.+.+. -|+...|.. -...+...|++++|++.|+...+.. .+ -....+.-++..+...++|++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3455555555555553 233333322 2233445555555555555444210 00 1112344455555566666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh-------HHHHHHHHHH
Q 001632 946 TRVYNESLAAGIIPDLACYRTMLKG-YMDHGYI-------EEGINLFEEV 987 (1041)
Q Consensus 946 ~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~-------~~A~~~~~~~ 987 (1041)
.+.+..+.+. -......|.-+..+ +...|+. ++|..++.++
T Consensus 325 ~~~f~~L~~~-s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 325 AEYFLRLLKE-SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHhc-cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 6666666553 23334444444333 2344544 5555555553
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.9 Score=40.52 Aligned_cols=114 Identities=15% Similarity=0.164 Sum_probs=72.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHH
Q 001632 863 INVYAAAGLYNEVEKLIQAMQRDGFSPN---SFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSC--THVNHLLSAFS 937 (1041)
Q Consensus 863 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~ 937 (1041)
.....+.|++++|++.|+.+... .+.. ...-.-|+.+|.+.|++++|...+++.++.. |+. ..|-....+++
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh--P~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH--PTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCCCccHHHHHHHHH
Confidence 44456789999999999999876 4433 3345667889999999999999999999953 433 23444444443
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHH
Q 001632 938 KAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFI 997 (1041)
Q Consensus 938 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 997 (1041)
.-...+ ..++.+. +..-| .+....|..-|++++...|.+..+
T Consensus 94 ~~~~~~---~~~~~~~--~~drD-------------~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 94 YYEQDE---GSLQSFF--RSDRD-------------PTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHhh---hHHhhhc--ccccC-------------cHHHHHHHHHHHHHHHHCcCChhH
Confidence 322222 2222222 12222 223557888888888878877654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.60 E-value=5.7 Score=40.03 Aligned_cols=193 Identities=22% Similarity=0.211 Sum_probs=135.3
Q ss_pred hccCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH-HHHHcCCHHH
Q 001632 797 GRGRKLDKALEMFNTARSL-GLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIIN-VYAAAGLYNE 874 (1041)
Q Consensus 797 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~-~~~~~g~~~~ 874 (1041)
...+.+..+...+...... ........+..+...+...+++..+...+.........+ ......... .+...|+++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 148 (291)
T COG0457 70 LKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEE 148 (291)
T ss_pred HHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHH
Confidence 3344455555555444431 224555667777777888888999999999988753332 122333333 6889999999
Q ss_pred HHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 001632 875 VEKLIQAMQRDGF--SPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPP-SCTHVNHLLSAFSKAGLMAEATRVYNE 951 (1041)
Q Consensus 875 A~~~~~~m~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 951 (1041)
|...+++...... ......+......+...++.++|...+....+.. +. ....+..+...+...|++++|...+..
T Consensus 149 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 227 (291)
T COG0457 149 ALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEK 227 (291)
T ss_pred HHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 9999999865211 1233444455555778899999999999999853 33 367788899999999999999999999
Q ss_pred HHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 001632 952 SLAAGIIPD-LACYRTMLKGYMDHGYIEEGINLFEEVRESSES 993 (1041)
Q Consensus 952 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 993 (1041)
.... .|+ ...+..+...+...|.++++...+.+.....+.
T Consensus 228 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 228 ALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9874 443 445555566666777899999999998876665
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.52 E-value=5.3 Score=39.26 Aligned_cols=312 Identities=13% Similarity=0.180 Sum_probs=172.3
Q ss_pred CCChHHHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHhccCCCCCChhh
Q 001632 694 KPGKLVLRSMIDAY-AKCGKAEDVYLLYKEATAQGCALDAV---AISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVA 769 (1041)
Q Consensus 694 ~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~g~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 769 (1041)
.||+..-|..-..- .+...+++|+.-|.+..+-......+ .+..++....+.+++++-...+.+++.
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT--------- 93 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT--------- 93 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH---------
Confidence 55665544432221 23457889999999988764333444 344556777788888777777666532
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhccCChHHHHHHHHHHHHC-CCCCCHH----HHHHHHHHHHhcCCHHHHHHHH
Q 001632 770 YNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSL-GLSLDEK----AYMNLVSFYGKAGKTHEASLLF 844 (1041)
Q Consensus 770 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~ 844 (1041)
.|++..-.+-.++.+...-..+ ....+.+-..+.|+.-++. .-..|.. +-..|...|...|.+.+-.+++
T Consensus 94 ---YIkSAVTrNySEKsIN~IlDyi--StS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIl 168 (440)
T KOG1464|consen 94 ---YIKSAVTRNYSEKSINSILDYI--STSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKIL 168 (440)
T ss_pred ---HHHHHHhccccHHHHHHHHHHH--hhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHH
Confidence 2333222222222221111111 1122222222333222110 0011222 2234666677777777777777
Q ss_pred HHHHHc-----CCCCC-------cccHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHH----HHHHhcCCH
Q 001632 845 SEMQEE-----GIKPG-------LISYNIIINVYAAAGLYNEVEKLIQAMQRD-GFSPNSFTYLSLV----QAYTEAAKY 907 (1041)
Q Consensus 845 ~~m~~~-----g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~l~----~~~~~~g~~ 907 (1041)
.++.+. |- .| ...|..-|..|...++-..-..+|++.+.- .--|-......+- ..+.+.|.+
T Consensus 169 kqLh~SCq~edGe-dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~f 247 (440)
T KOG1464|consen 169 KQLHQSCQTEDGE-DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEF 247 (440)
T ss_pred HHHHHHhccccCc-hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchH
Confidence 777654 21 11 234666677777777777777777776542 1234333333221 234567888
Q ss_pred HHHHHHH-HHHH---HCCCCCCh---hHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 001632 908 SEAEETI-NSMQ---KQGIPPSC---THVNHLLSAFSKAG----LMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGY 976 (1041)
Q Consensus 908 ~~A~~~~-~~~~---~~~~~p~~---~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 976 (1041)
++|-.-| +... +.| .|.. .-|-.|+.++.+.| +-.+|.- ....|.......|+.+| +.++
T Consensus 248 e~AhTDFFEAFKNYDEsG-spRRttCLKYLVLANMLmkS~iNPFDsQEAKP-------yKNdPEIlAMTnlv~aY-Q~Nd 318 (440)
T KOG1464|consen 248 EKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLANMLMKSGINPFDSQEAKP-------YKNDPEILAMTNLVAAY-QNND 318 (440)
T ss_pred HHHHhHHHHHHhcccccC-CcchhHHHHHHHHHHHHHHcCCCCCcccccCC-------CCCCHHHHHHHHHHHHH-hccc
Confidence 8875443 3333 244 2332 23556667777766 2222211 11234556778888887 4567
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhccCccchh
Q 001632 977 IEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRIPFMK 1030 (1041)
Q Consensus 977 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~ 1030 (1041)
..+-..++..-+...-.|+++..++-+++.. =+.+--+++++--...+|||+.
T Consensus 319 I~eFE~Il~~~~~~IM~DpFIReh~EdLl~n-iRTQVLlkLIkPYt~i~Ipfis 371 (440)
T KOG1464|consen 319 IIEFERILKSNRSNIMDDPFIREHIEDLLRN-IRTQVLLKLIKPYTNIGIPFIS 371 (440)
T ss_pred HHHHHHHHHhhhccccccHHHHHHHHHHHHH-HHHHHHHHHhccccccCchhhH
Confidence 7777777777777778889998888777654 4566667777777788998764
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.52 E-value=1 Score=49.86 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001632 821 EKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQA 900 (1041)
Q Consensus 821 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 900 (1041)
..-.+.++..+.+.|..+.|+++.+.-..+ .....+.|+++.|.++.++ .++...|..|...
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r------------FeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPDHR------------FELALQLGNLDIALEIAKE------LDDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH------------HHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChHHH------------hHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHH
Confidence 445777888888888888887776554332 3344677888888776553 3466788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 001632 901 YTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEG 980 (1041)
Q Consensus 901 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 980 (1041)
...+|+++-|++.|++..+ +..|.-.|.-.|+.+.-.++.+...+.|- ++....++.-.|++++.
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHH
Confidence 8888888888888877554 45677777788887777777776665532 23334444455666666
Q ss_pred HHHHHH
Q 001632 981 INLFEE 986 (1041)
Q Consensus 981 ~~~~~~ 986 (1041)
++++.+
T Consensus 422 v~lL~~ 427 (443)
T PF04053_consen 422 VDLLIE 427 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666655
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.39 Score=44.59 Aligned_cols=93 Identities=16% Similarity=0.088 Sum_probs=78.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 001632 933 LSAFSKAGLMAEATRVYNESLAAGIIPDL-----ACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRY 1007 (1041)
Q Consensus 933 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1007 (1041)
+.-+.+.|++++|..-|..+++. +++.+ ..|..-..++++.+.++.|+.-..++++..|...-++..-+.+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 34567899999999999999986 55543 3455556678899999999999999999999888888888999999
Q ss_pred cCChhHHHHHHHHhhccCc
Q 001632 1008 AGKEHEANDILDSMNSVRI 1026 (1041)
Q Consensus 1008 ~g~~~eA~~~~~~~~~~~~ 1026 (1041)
..++++|++=++++.+..-
T Consensus 181 ~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDP 199 (271)
T ss_pred hhhHHHHHHHHHHHHHhCc
Confidence 9999999999999887543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.46 E-value=4.6 Score=40.75 Aligned_cols=143 Identities=15% Similarity=0.117 Sum_probs=87.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 001632 829 SFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYS 908 (1041)
Q Consensus 829 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~ 908 (1041)
......|++.+|..+|....+...+ +......|+.+|...|+.+.|..++..+...--.........-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3456678888888888887775222 334556677888888888888888887654322222222233345555555555
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcC
Q 001632 909 EAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAA--GIIPDLACYRTMLKGYMDHG 975 (1041)
Q Consensus 909 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g 975 (1041)
+...+-+.+-. -+.|...-..+...|...|+.++|.+.+-.++.+ |.. |...-..++..+.--|
T Consensus 221 ~~~~l~~~~aa--dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAA--DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 55555555444 2335666677888888888888888877777654 222 3444555555554444
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.53 Score=41.56 Aligned_cols=97 Identities=6% Similarity=0.037 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001632 183 VVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSS 262 (1041)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 262 (1041)
..++..+|.++++.|+.+....+++..-.- ..+... ..+. --......|+..+..+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI--~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGI--DVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCC--CCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 456777888888888888888877665422 111000 0000 00111234555555555555
Q ss_pred HHhcCChhHHHHHHHHHhh-CCCCCCHHHHHHHHHHHH
Q 001632 263 LHKKSYHRKVIDLWRQMMD-KGVAPTDFTYTLVISSFV 299 (1041)
Q Consensus 263 ~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~ 299 (1041)
|+.+|++..|+++.+...+ .+++.+..+|..|+.-..
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5555555555555555432 344444555555554443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.39 E-value=7.5 Score=40.47 Aligned_cols=53 Identities=23% Similarity=0.165 Sum_probs=32.5
Q ss_pred HhhcCHHHHHHHHHHHHhhC-CCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001632 158 KEQKGWRQATEFFAWMKLQL-SYRPCV------VAYTILLRLYGQVGKIKLAEQTFLEML 210 (1041)
Q Consensus 158 ~~~~~~~~A~~~~~~~~~~~-~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~ 210 (1041)
.++|+.+.|..++..+.... ...|+. ..|+.....+.+..+++.|..++++..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~ 63 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAY 63 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 45788888888888776543 223332 235555555544447777777776644
|
It is also involved in sporulation []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.37 E-value=3.1 Score=37.94 Aligned_cols=124 Identities=15% Similarity=0.281 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc
Q 001632 860 NIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKA 939 (1041)
Q Consensus 860 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 939 (1041)
..++..+.+.+.......+++.+...+ ..+....+.++..|++.+ ..+....++. ..+.......+..+.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 344555555555556666666555543 244445555555555442 2233333331 12223334455555556
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 001632 940 GLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDH-GYIEEGINLFEEVRESSESDKFIMSAAVHLY 1005 (1041)
Q Consensus 940 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 1005 (1041)
|.++++..++.++-. +...+..+... ++++.|++++.+ ..++..+..++..+
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~ 135 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKAL 135 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 666666666655411 11122222333 566666666654 22444555554443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.19 E-value=4.4 Score=37.07 Aligned_cols=54 Identities=7% Similarity=0.063 Sum_probs=23.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 001632 936 FSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRE 989 (1041)
Q Consensus 936 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 989 (1041)
+...|-+++...-.+.+-..+.+-.......|.-+-.+.|++.+|..+|+++.+
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 344455555444444443222222222333333344455555555555555443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.37 Score=47.32 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=19.1
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCC
Q 001632 272 VIDLWRQMMDKGVAPTDFTYTLVISSFVKGSL 303 (1041)
Q Consensus 272 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 303 (1041)
+++++++|...|+.||..+-..|++++.+.|.
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 45566666666666666666666666655544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.04 E-value=11 Score=41.12 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=27.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001632 897 LVQAYTEAAKYSEAEETINSMQKQGIPP--SCTHVNHLLSAFSKAGLMAEATRVYNES 952 (1041)
Q Consensus 897 l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 952 (1041)
|.....+.|+.+||.+.+++|.+.. +. .......|+.+|...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3344445555566665555555421 11 1123445555555555555555555554
|
The molecular function of this protein is uncertain. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.53 Score=41.53 Aligned_cols=47 Identities=9% Similarity=0.006 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHH
Q 001632 389 VAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQL-GLLSDEKTYLAMA 435 (1041)
Q Consensus 389 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li 435 (1041)
..|+..+..+++.+|+..|++..|.++.+.+.+. +++.+..+|..|+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3444444555555555555555555554444332 3333344444433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.88 E-value=4.1 Score=44.22 Aligned_cols=65 Identities=20% Similarity=0.168 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 001632 821 EKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKP-GLISYNIIINVYAAAGLYNEVEKLIQAMQRD 885 (1041)
Q Consensus 821 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 885 (1041)
..+-..|..+.-+.|+.++|++.|++|.+....- +......|+.++...+.+.++..++.+..+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 4444557777778899999999999987652111 2234557888888899999998888887543
|
The molecular function of this protein is uncertain. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.73 E-value=2.6 Score=38.50 Aligned_cols=48 Identities=10% Similarity=0.117 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHhhcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 001632 147 KLSFREMCVVLKEQKGWRQATEFFAWMKLQLSYRPCVVAYTILLRLYGQV 196 (1041)
Q Consensus 147 ~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 196 (1041)
......++..+...+.+.....+++++.... ..+....+.++..|++.
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKY 54 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHH
Confidence 3445556666655556666666666655432 23444555666666554
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.63 E-value=19 Score=42.39 Aligned_cols=196 Identities=14% Similarity=0.102 Sum_probs=111.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCcc-------cHHHHHH-HHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHH
Q 001632 828 VSFYGKAGKTHEASLLFSEMQEEGIKPGLI-------SYNIIIN-VYAAAGLYNEVEKLIQAMQRD----GFSPNSFTYL 895 (1041)
Q Consensus 828 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------~~~~l~~-~~~~~g~~~~A~~~~~~m~~~----g~~~~~~~~~ 895 (1041)
+.......++++|..++.+....=..|+.. .++.+-. +....|++++|+++.+..... -..+....+.
T Consensus 422 aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~s 501 (894)
T COG2909 422 AWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALS 501 (894)
T ss_pred HHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhh
Confidence 444556788999999988876641122221 3443322 234578889999988887764 1234455667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHH---HHH--HHHHHhcCCH--HHHHHHHHHHHHC--CCCCC----HH
Q 001632 896 SLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHV---NHL--LSAFSKAGLM--AEATRVYNESLAA--GIIPD----LA 962 (1041)
Q Consensus 896 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~---~~l--~~~~~~~g~~--~~A~~~~~~~~~~--~~~p~----~~ 962 (1041)
.+..+..-.|++++|..+.....+..-.-+...+ ..+ ...+..+|+. .+.+..+....+. +-.|- ..
T Consensus 502 v~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~ 581 (894)
T COG2909 502 VLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR 581 (894)
T ss_pred hhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence 7778888899999999988877763222233332 222 3456677843 3333333333221 01111 23
Q ss_pred HHHHHHHHHHhc-CChHHHHHHHHHHHhccCC--hH-HHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 001632 963 CYRTMLKGYMDH-GYIEEGINLFEEVRESSES--DK-FIMSAAVHLYRYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 963 ~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~--~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 1023 (1041)
++..+.+++.+. +.-.+|..-++-.....+. ++ ..+..|+.++...|+.++|...++++..
T Consensus 582 ~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 582 IRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445555665552 2222333333322222222 22 3334678888999999999999888765
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.26 Score=33.97 Aligned_cols=39 Identities=26% Similarity=0.291 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001632 928 HVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTM 967 (1041)
Q Consensus 928 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 967 (1041)
.+..++..|...|++++|+++|+++++. .+-|...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~-~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL-DPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCCHHHHHHh
Confidence 4556667777777777777777777664 22244444443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.41 E-value=19 Score=41.84 Aligned_cols=85 Identities=24% Similarity=0.380 Sum_probs=46.1
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCC
Q 001632 469 MLQCYVMKEDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQV-DFDEELYRSVMKIYCKEGM 547 (1041)
Q Consensus 469 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~ 547 (1041)
++.-|.....+.+...+++.+.+.|..+...-..|+.+|.+.++.++-.++.+... .|. ..| ....+..+.+.+-
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~sny 478 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNY 478 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhCh
Confidence 34444455555555566666666666666666666677777666666665555443 111 112 2334455555555
Q ss_pred hhhHHHHHHH
Q 001632 548 VTDAEQFVEE 557 (1041)
Q Consensus 548 ~~~A~~~~~~ 557 (1041)
.++|..+-..
T Consensus 479 l~~a~~LA~k 488 (933)
T KOG2114|consen 479 LDEAELLATK 488 (933)
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.38 E-value=4.9 Score=34.93 Aligned_cols=134 Identities=13% Similarity=0.226 Sum_probs=64.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHhHH
Q 001632 406 LGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRF---AYIVMLQCYVMKEDLGSA 482 (1041)
Q Consensus 406 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a 482 (1041)
.|.+++..++..+.... .+..-+|.+|--....-+-+-..+.++.+.+- .|.. -.-.++.+|...+.
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~C~NlKrVi~C~~~~n~---- 84 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISKCGNLKRVIECYAKRNK---- 84 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-S-THHHHHHHHHTT-----
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCchhhcchHHHHHHHHHhcc----
Confidence 45566666666655543 24444555554444444444444444443221 1111 12234444444432
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 001632 483 EGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNG 562 (1041)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 562 (1041)
+......-++....+|+-+.-.+++..+.+ +-.+++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus 85 -------------~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 85 -------------LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred -------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 222233345556667777777777776654 235677777777777777777777777777777766
Q ss_pred C
Q 001632 563 S 563 (1041)
Q Consensus 563 ~ 563 (1041)
+
T Consensus 151 ~ 151 (161)
T PF09205_consen 151 L 151 (161)
T ss_dssp -
T ss_pred h
Confidence 4
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.58 Score=45.98 Aligned_cols=32 Identities=16% Similarity=0.273 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 001632 342 ALSLYKDMRSRGLIPSNYTCASLLSLYYKNEN 373 (1041)
Q Consensus 342 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 373 (1041)
++.++++|...|+.||..+-..|++++.+.+-
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 45555555555555555555555555555443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.35 E-value=1.6 Score=48.29 Aligned_cols=153 Identities=16% Similarity=0.175 Sum_probs=83.8
Q ss_pred HcCCCHHHHHHHHH--HHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001632 299 VKGSLLEEALKTFN--EMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSK 376 (1041)
Q Consensus 299 ~~~g~~~~A~~~~~--~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 376 (1041)
.-.|+++++.++.. ++.. . -| ..-.+.++..+-+.|..+.|+++...-. .-.....+.|+++.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~-~-i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP-N-IP-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhcc-c-CC-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHH
Confidence 34567777655554 1121 1 11 3446677777777777777777644321 22344556777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001632 377 ALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKS 456 (1041)
Q Consensus 377 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 456 (1041)
|.++.++. .+...|..|.+...++|+++-|++.|.+..+ +..|+-.|.-.|+.+...++.+....
T Consensus 337 A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 77654332 2566777777777777777777777766543 45566666777777777777666666
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 001632 457 RNMWLSRFAYIVMLQCYVMKEDLGSAEGTFQ 487 (1041)
Q Consensus 457 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 487 (1041)
+|- ++....++.-.|+.++..+++.
T Consensus 402 ~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 402 RGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred ccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 652 3444445555566666555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.29 E-value=6.2 Score=36.18 Aligned_cols=125 Identities=16% Similarity=0.169 Sum_probs=69.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHH--HHHHHhcCC
Q 001632 831 YGKAGKTHEASLLFSEMQEEGIKPGL-ISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSF-TYLSL--VQAYTEAAK 906 (1041)
Q Consensus 831 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l--~~~~~~~g~ 906 (1041)
+++.++.++|..-|..+.+.|..-=+ .....+.....+.|+...|+..|.++-...-.|-.. -.--| ...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 35566677777777777666443111 111122334556677777777777766543333332 11112 223456677
Q ss_pred HHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001632 907 YSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAA 955 (1041)
Q Consensus 907 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 955 (1041)
+++...-.+-+...+.+-....-..|+-+-.+.|++.+|...|+.+...
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 7777766666655442333334456666667777777777777776553
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.06 E-value=6.9 Score=36.88 Aligned_cols=88 Identities=13% Similarity=0.129 Sum_probs=49.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 001632 863 INVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYL-----SLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFS 937 (1041)
Q Consensus 863 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 937 (1041)
...+...|++++|+..++..... |....+. .|.......|.+++|+.+++...+.+. .......-+++|.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 34556667777777777666542 1112222 233455666777777777766655331 1222344556677
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 001632 938 KAGLMAEATRVYNESLAA 955 (1041)
Q Consensus 938 ~~g~~~~A~~~~~~~~~~ 955 (1041)
..|+-++|..-|++.++.
T Consensus 171 ~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 171 AKGDKQEARAAYEKALES 188 (207)
T ss_pred HcCchHHHHHHHHHHHHc
Confidence 777777777777776664
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.99 E-value=9 Score=39.95 Aligned_cols=148 Identities=14% Similarity=0.228 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHH--cC----CHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCC-
Q 001632 837 THEASLLFSEMQEEGIKPGLISYNIIINVYAA--AG----LYNEVEKLIQAMQRDGF---SPNSFTYLSLVQAYTEAAK- 906 (1041)
Q Consensus 837 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~--~g----~~~~A~~~~~~m~~~g~---~~~~~~~~~l~~~~~~~g~- 906 (1041)
+++.+.+++.|.+.|++-+..+|-+..-.... .. ...+|..+|+.|++... .++..++..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45567788889999998777766553333322 22 35678899999998632 3555666665433 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCCChh--HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 001632 907 ---YSEAEETINSMQKQGIPPSCT--HVNHLLSAFSKAGL--MAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEE 979 (1041)
Q Consensus 907 ---~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 979 (1041)
.+.++.+|+.+.+.|+..+.. ...+++........ ..++.++++.+.+.|++.....|..++-...-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 366788899999888776544 22333322222222 45889999999999998877777665443333333324
Q ss_pred HHHHHHH
Q 001632 980 GINLFEE 986 (1041)
Q Consensus 980 A~~~~~~ 986 (1041)
...-+..
T Consensus 236 ~~~~i~e 242 (297)
T PF13170_consen 236 IVEEIKE 242 (297)
T ss_pred HHHHHHH
Confidence 4444333
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.24 Score=32.28 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 001632 929 VNHLLSAFSKAGLMAEATRVYNESL 953 (1041)
Q Consensus 929 ~~~l~~~~~~~g~~~~A~~~~~~~~ 953 (1041)
|..|+.+|.+.|++++|+++|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666666666666666666644
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.72 E-value=14 Score=38.47 Aligned_cols=129 Identities=15% Similarity=0.283 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--cC----ChHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCH
Q 001632 304 LEEALKTFNEMKSTGFAPEEVTYSQLISLSIK--HG----KSDEALSLYKDMRSRGL---IPSNYTCASLLSLYYKNENY 374 (1041)
Q Consensus 304 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~~~---~p~~~~~~~li~~~~~~~~~ 374 (1041)
+++...+++.|.+.|+.-+..+|-+-...+.. .. ....|..+|+.|++... .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455666777777776666555443222221 12 24457777777776542 3344555555443 33332
Q ss_pred ----HHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 001632 375 ----SKALSLFSEMEKFKVAADEV--IYGLLIRIYGKLGL--YEDAQKTFAETEQLGLLSDEKTYLAM 434 (1041)
Q Consensus 375 ----~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l 434 (1041)
+.++.+++.+.+.|+..+.. ..+.++........ ...+.++++.+.+.|++.....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 44566666666655543322 22222222111111 33566666666666666555555443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.63 Score=47.01 Aligned_cols=93 Identities=17% Similarity=0.119 Sum_probs=52.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 001632 899 QAYTEAAKYSEAEETINSMQKQGIPP-SCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYI 977 (1041)
Q Consensus 899 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 977 (1041)
+-|.++|++++|+..|...... .| +.+.+.+.+.+|.+.+.+..|+.-++.++..+ ..-...|.--+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 4466666777776666666653 34 66666666666666666666666666655421 11112233333333345666
Q ss_pred HHHHHHHHHHHhccCCh
Q 001632 978 EEGINLFEEVRESSESD 994 (1041)
Q Consensus 978 ~~A~~~~~~~~~~~~~~ 994 (1041)
++|.+-++.+.+..|.+
T Consensus 182 ~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHhHHHHHhhCccc
Confidence 66666666666655554
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.18 E-value=6.8 Score=45.42 Aligned_cols=179 Identities=18% Similarity=0.189 Sum_probs=90.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHH--HHHH-HHhcCCHHHHHHHHHHHHH-------cCCCCCcccHHHHHHHHHHcC
Q 001632 801 KLDKALEMFNTARSLGLSLDEKAYMN--LVSF-YGKAGKTHEASLLFSEMQE-------EGIKPGLISYNIIINVYAAAG 870 (1041)
Q Consensus 801 ~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~l~~~~~~~g 870 (1041)
....|.+.++...+.|. ........ +..+ +....+.+.|...|+.+.+ +| .......+..+|.+..
T Consensus 227 ~~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence 35677788887777652 11112222 2222 3355677888888877766 44 3334556666666543
Q ss_pred -----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHH----hcC
Q 001632 871 -----LYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTE-AAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFS----KAG 940 (1041)
Q Consensus 871 -----~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g 940 (1041)
+.+.|+.++...-+.| .|+...+...+.-... ..++..|.+.|....+.|..+ .+..+..+|. -..
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~---A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL---AIYRLALCYELGLGVER 378 (552)
T ss_pred CCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH---HHHHHHHHHHhCCCcCC
Confidence 4566777777666654 2333333222211111 134567777777777766322 2222222221 122
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 001632 941 LMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRE 989 (1041)
Q Consensus 941 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 989 (1041)
+.+.|..++++..+.| .|........+..+.. +.+..+...+..+.+
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE 425 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH
Confidence 6677777777776665 2222222222223333 555555555555444
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.14 E-value=27 Score=40.22 Aligned_cols=86 Identities=10% Similarity=0.002 Sum_probs=40.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--hHHHH-HHHHHHHcCCCChhHHHHHHHHHHhc
Q 001632 434 MAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDL--GSAEG-TFQTLAKTGLPDAGSCNDMLNLYIKL 510 (1041)
Q Consensus 434 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~a~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ 510 (1041)
+|+-+...+.+..|+++...+...-..- ...|....+.+.+..+. +++.+ +-+++... .....+|..+..-....
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTPGISYAAIARRAYQE 520 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CCCceeHHHHHHHHHhc
Confidence 3455555666666666666554332111 34455555555544321 11111 11221111 23444555666656666
Q ss_pred CCHHHHHHHHH
Q 001632 511 DLTEKAKGFIA 521 (1041)
Q Consensus 511 ~~~~~A~~~~~ 521 (1041)
|+++-|..+++
T Consensus 521 GR~~LA~kLle 531 (829)
T KOG2280|consen 521 GRFELARKLLE 531 (829)
T ss_pred CcHHHHHHHHh
Confidence 66666666554
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.04 E-value=7.9 Score=36.49 Aligned_cols=54 Identities=7% Similarity=0.136 Sum_probs=22.9
Q ss_pred HHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCChhHHHHHHHHhhcc
Q 001632 970 GYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSV 1024 (1041)
Q Consensus 970 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 1024 (1041)
.....|++++|+..++...+. .-.+.....-++++...|+.++|..-+.+..+.
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 344445555555544443221 011122333344555555555555554444443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.73 E-value=9.3 Score=35.52 Aligned_cols=101 Identities=19% Similarity=0.196 Sum_probs=47.2
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001632 309 KTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFK 388 (1041)
Q Consensus 309 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 388 (1041)
+.+..+.+.++.|+...|..++..+.+.|++... ..+...++-+|.......+-.+. +....+.++--.|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 3444445556666666666666666666654433 33333444455444443332221 1222233333333321
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001632 389 VAADEVIYGLLIRIYGKLGLYEDAQKTFAET 419 (1041)
Q Consensus 389 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 419 (1041)
=...+..+++.+...|++-+|.+.....
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0012444555566666666666665443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.27 Score=31.50 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=18.7
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHH
Q 001632 914 INSMQKQGIPPSCTHVNHLLSAFSKAGLMAEAT 946 (1041)
Q Consensus 914 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 946 (1041)
|++.++.+ |.+...|+.|+.+|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444433 444556666777776677666664
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.35 E-value=4.2 Score=38.69 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcc--CChHHHHHH--H
Q 001632 928 HVNHLLSAFSKAGLMAEATRVYNESLAAGIIPD--LACYRTMLKGYMDHGYIEEGINLFEEVRESS--ESDKFIMSA--A 1001 (1041)
Q Consensus 928 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~--l 1001 (1041)
.+..+++.|++.|+.++|.+.|.++.+....+. ...+-.+++.....|++..+...+.++.... ..|....+. .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 456666677777777777777777665433332 2244555666666667777666666655422 222222221 1
Q ss_pred --HHHHHhcCChhHHHHHHHHhh
Q 001632 1002 --VHLYRYAGKEHEANDILDSMN 1022 (1041)
Q Consensus 1002 --~~~~~~~g~~~eA~~~~~~~~ 1022 (1041)
+-.+...|++.+|.++|-...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 222344677777777665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.29 E-value=25 Score=41.35 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=14.7
Q ss_pred HHhcCChhHHHHHHHHhh
Q 001632 1005 YRYAGKEHEANDILDSMN 1022 (1041)
Q Consensus 1005 ~~~~g~~~eA~~~~~~~~ 1022 (1041)
+++.|+|++|++.++++.
T Consensus 515 ~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHhCC
Confidence 668999999999998875
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.28 E-value=32 Score=39.46 Aligned_cols=119 Identities=16% Similarity=0.205 Sum_probs=77.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCcc-cH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 001632 830 FYGKAGKTHEASLLFSEMQEEGIKPGLI-SY---NIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAA 905 (1041)
Q Consensus 830 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~---~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 905 (1041)
++.--|+-++|..+.++|... + |+. -| -++..+|+-.|+.....+++.-.... ...|..-+....-++.-..
T Consensus 510 aL~~ygrqe~Ad~lI~el~~d--k-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~ 585 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRD--K-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFR 585 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcC--C-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEec
Confidence 344567778999999999864 2 332 22 24566788888876666666654543 4556665666666677778
Q ss_pred CHHHHHHHHHHHHHCCCCCChhH--HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 906 KYSEAEETINSMQKQGIPPSCTH--VNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 906 ~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
+++....+.+-+.+. ..|-... --.|+-+|+-.|+ .+|+.+++-|..
T Consensus 586 dp~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 586 DPEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred ChhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 888888888888774 3454432 2334444444454 689999999875
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.25 E-value=14 Score=35.32 Aligned_cols=182 Identities=14% Similarity=0.129 Sum_probs=109.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001632 833 KAGKTHEASLLFSEMQEEGIKPGL-ISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAE 911 (1041)
Q Consensus 833 ~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 911 (1041)
..|-+.-|.-=|.+... +.|+. ..||-+.--+...|+++.|.+.|+...+.. +....+...-.-++.-.|++.-|.
T Consensus 77 SlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 77 SLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhccceeeeecCchHhhH
Confidence 34445555555555554 35664 567878777889999999999999998852 222333333344456689999998
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHh
Q 001632 912 ETINSMQKQGIPPSCTHVNHLLSAFSK-AGLMAEATRVYNESLAAGIIPDLACYRTMLKG-YMDHGYIEEGINLFEEVRE 989 (1041)
Q Consensus 912 ~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~ 989 (1041)
+-+...-+.+ +.|+ |..|---+.. .-+..+|..-+.+--+ ..|...|...+-. |...=..+. +++++.+
T Consensus 154 ~d~~~fYQ~D-~~DP--fR~LWLYl~E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~e~---l~~~~~a 224 (297)
T COG4785 154 DDLLAFYQDD-PNDP--FRSLWLYLNEQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISEET---LMERLKA 224 (297)
T ss_pred HHHHHHHhcC-CCCh--HHHHHHHHHHhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccHHH---HHHHHHh
Confidence 8887777654 3333 2333222222 3367777765554322 2344445444333 322222222 3333333
Q ss_pred ccCCh-------HHHHHHHHHHHHhcCChhHHHHHHHHhhccCc
Q 001632 990 SSESD-------KFIMSAAVHLYRYAGKEHEANDILDSMNSVRI 1026 (1041)
Q Consensus 990 ~~~~~-------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 1026 (1041)
....+ ..+|.-++..|...|+.++|..+++-.....+
T Consensus 225 ~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 225 DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 32222 36778889999999999999999987655443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.74 E-value=13 Score=34.06 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=22.0
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHH
Q 001632 868 AAGLYNEVEKLIQAMQRDGFSPNSFTYLS-LVQAYTEAAKYSEAEETINSMQK 919 (1041)
Q Consensus 868 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~ 919 (1041)
+.++.+++..++..+.- +.|....... -...+...|++.+|+.+|+++.+
T Consensus 22 ~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 34455555555555443 2333222221 12224455555555555555444
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.69 E-value=13 Score=37.37 Aligned_cols=60 Identities=17% Similarity=0.157 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 001632 929 VNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRE 989 (1041)
Q Consensus 929 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 989 (1041)
++.....|..+|.+.+|.++.++.++. .+.+...+..++..|...||--.|...++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344556677777777777777777664 334666777777777777776666666666544
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.38 E-value=0.69 Score=29.46 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=9.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc
Q 001632 967 MLKGYMDHGYIEEGINLFEEVRES 990 (1041)
Q Consensus 967 l~~~~~~~g~~~~A~~~~~~~~~~ 990 (1041)
+...+...|++++|+..++++.+.
T Consensus 7 lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 333444444444444444444433
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.99 E-value=20 Score=34.91 Aligned_cols=128 Identities=14% Similarity=0.156 Sum_probs=65.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc-CCHHHHHH
Q 001632 869 AGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKA-GLMAEATR 947 (1041)
Q Consensus 869 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~ 947 (1041)
.++..+|+..++.. |..|...|++..|-....++- ..|-.. .++++|+.
T Consensus 86 k~~~~eAv~cL~~a---------------ieIyt~~Grf~~aAk~~~~ia---------------EiyEsdl~d~ekaI~ 135 (288)
T KOG1586|consen 86 KVDPEEAVNCLEKA---------------IEIYTDMGRFTMAAKHHIEIA---------------EIYESDLQDFEKAIA 135 (288)
T ss_pred ccChHHHHHHHHHH---------------HHHHHhhhHHHHHHhhhhhHH---------------HHHhhhHHHHHHHHH
Confidence 33666666655544 334666777666555444433 333322 46667777
Q ss_pred HHHHHHHC--CCCCCHHHHHHHHH---HHHhcCChHHHHHHHHHHHhc-cCChHHHHH------HHHHHHHhcCChhHHH
Q 001632 948 VYNESLAA--GIIPDLACYRTMLK---GYMDHGYIEEGINLFEEVRES-SESDKFIMS------AAVHLYRYAGKEHEAN 1015 (1041)
Q Consensus 948 ~~~~~~~~--~~~p~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~------~l~~~~~~~g~~~eA~ 1015 (1041)
.|+..-+- |-..+...-.+++. .-...+++.+|+.+|+++... ...+..-|. ..+-++.-.++.-.+.
T Consensus 136 ~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~ 215 (288)
T KOG1586|consen 136 HYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQ 215 (288)
T ss_pred HHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHH
Confidence 77665442 22223333333332 234678999999999996653 333322222 2222222235555555
Q ss_pred HHHHHhhccCc
Q 001632 1016 DILDSMNSVRI 1026 (1041)
Q Consensus 1016 ~~~~~~~~~~~ 1026 (1041)
.-+++-.+..-
T Consensus 216 ~ALeky~~~dP 226 (288)
T KOG1586|consen 216 RALEKYQELDP 226 (288)
T ss_pred HHHHHHHhcCC
Confidence 55555554443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.72 E-value=30 Score=40.25 Aligned_cols=220 Identities=17% Similarity=0.161 Sum_probs=135.3
Q ss_pred HhccCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCCcccHHHHH
Q 001632 796 YGRGRKLDKALEMFNTARS-------LGLSLDEKAYMNLVSFYGKAG-----KTHEASLLFSEMQEEGIKPGLISYNIII 863 (1041)
Q Consensus 796 ~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 863 (1041)
++...+++.|+..|+.+.+ ++ +....+.+..+|.+.. +.+.|..++.+..+.|. |+... .+.
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~--~lg 332 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQY--LLG 332 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHH--HHH
Confidence 6678899999999999987 55 3335667777777743 56779999999988764 33322 233
Q ss_pred HHHHHc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 001632 864 NVYAAA---GLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAY--TEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSK 938 (1041)
Q Consensus 864 ~~~~~~---g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 938 (1041)
..|... .+...|.++|...-+.|.. +..-+..+.... .-..+.+.|...+++..++| .|....-...+..+..
T Consensus 333 ~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~ 410 (552)
T KOG1550|consen 333 VLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV 410 (552)
T ss_pred HHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc
Confidence 333322 4678999999999888732 222222222111 13347899999999999987 4432323333444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHH---Hhc-CChHHHHHHHHH-HHhccCChHHHHHHHHHHHHhc---C
Q 001632 939 AGLMAEATRVYNESLAAGIIPDLACYRTML-KGY---MDH-GYIEEGINLFEE-VRESSESDKFIMSAAVHLYRYA---G 1009 (1041)
Q Consensus 939 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~---~~~-g~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~---g 1009 (1041)
++++.+.-.+..+.+.|.+ ...+-..++ ... ... +-.+.-...+.. .+.....++.....++++|... +
T Consensus 411 -~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~ 488 (552)
T KOG1550|consen 411 -GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTG 488 (552)
T ss_pred -ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCC
Confidence 8888888888887776554 222222221 111 111 112333333333 4456777888888899988764 2
Q ss_pred -ChhHHHHHHHHhhccC
Q 001632 1010 -KEHEANDILDSMNSVR 1025 (1041)
Q Consensus 1010 -~~~eA~~~~~~~~~~~ 1025 (1041)
+.+.|...+.+..+.+
T Consensus 489 ~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 489 RDPEKAAAQYARASEQG 505 (552)
T ss_pred CChHHHHHHHHHHHHhh
Confidence 4667776666655544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.58 E-value=0.8 Score=29.24 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 928 HVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 928 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
.|..++.+|...|++++|++.|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344445555555555555555555444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.48 E-value=0.97 Score=28.83 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 001632 963 CYRTMLKGYMDHGYIEEGINLFEEVRESSES 993 (1041)
Q Consensus 963 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 993 (1041)
+|..+...|...|++++|+..|+++.+..|.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4566677777777777777777777766554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.48 E-value=0.73 Score=30.01 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 001632 964 YRTMLKGYMDHGYIEEGINLFEEVR 988 (1041)
Q Consensus 964 ~~~l~~~~~~~g~~~~A~~~~~~~~ 988 (1041)
|..|...|.+.|++++|+.+|+++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566677777777777777777733
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=89.36 E-value=53 Score=38.93 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=24.9
Q ss_pred cCCHHHHHHHHHHHHHc----CCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001632 834 AGKTHEASLLFSEMQEE----GIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQR 884 (1041)
Q Consensus 834 ~g~~~~A~~~~~~m~~~----g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 884 (1041)
.|++++|+.+.+...+. -..+..+.+..+..+..-.|++++|..+.++..+
T Consensus 471 ~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 471 RGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred cCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 45556666555555443 1122233344444555555666666555554443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.35 E-value=5.2 Score=36.59 Aligned_cols=111 Identities=15% Similarity=0.117 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCChhHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 001632 890 NSFTYLSLVQAY---TEAAKYSEAEETINSMQKQGIPPSCTHV-NHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYR 965 (1041)
Q Consensus 890 ~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 965 (1041)
+..+.+.|+... .+.++.++++.++..+.- +.|..... ..-+..+...|+|.+|+++++++.+. .|....-.
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~k 81 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAK 81 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHH
Confidence 444555665544 577899999999999998 45765543 34567788899999999999998764 34444445
Q ss_pred HHHHHHHh-cCChHHHHHHH-HHHHhccCChHHHHHHHHHHHHh
Q 001632 966 TMLKGYMD-HGYIEEGINLF-EEVRESSESDKFIMSAAVHLYRY 1007 (1041)
Q Consensus 966 ~l~~~~~~-~g~~~~A~~~~-~~~~~~~~~~~~~~~~l~~~~~~ 1007 (1041)
.|+..|.. .|| ..+..+ +++.+. .+|+.+...+-.++..
T Consensus 82 ALlA~CL~~~~D--~~Wr~~A~evle~-~~d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 82 ALLALCLYALGD--PSWRRYADEVLES-GADPDARALVRALLAR 122 (160)
T ss_pred HHHHHHHHHcCC--hHHHHHHHHHHhc-CCChHHHHHHHHHHHh
Confidence 55554443 343 333333 335443 3455555444444443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.84 E-value=4.2 Score=41.33 Aligned_cols=73 Identities=18% Similarity=0.198 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 001632 894 YLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLA-----AGIIPDLACYRTM 967 (1041)
Q Consensus 894 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l 967 (1041)
+..++..+...|+++.+.+.++++.+.. +-+...|..++.+|...|+...|+..|+++.+ .|+.|.+.+....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 3445555666666666666666666653 44555666666666666666666666666543 3555555444433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.44 E-value=5.5 Score=37.91 Aligned_cols=97 Identities=10% Similarity=0.052 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH---HH
Q 001632 893 TYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCT--HVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYR---TM 967 (1041)
Q Consensus 893 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~l 967 (1041)
.+..++.-|.+.|+.++|.+.|.++.+....+... .+-.++......|++..+...+.++...--..+..... ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 35556666777777777777777776654333322 45566666677777777777766654321111111111 11
Q ss_pred HH--HHHhcCChHHHHHHHHHHHh
Q 001632 968 LK--GYMDHGYIEEGINLFEEVRE 989 (1041)
Q Consensus 968 ~~--~~~~~g~~~~A~~~~~~~~~ 989 (1041)
.. .+...++|.+|-+.|-.+..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCc
Confidence 11 23356788888877766443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.33 E-value=22 Score=33.17 Aligned_cols=133 Identities=13% Similarity=0.200 Sum_probs=60.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 001632 239 TFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTG 318 (1041)
Q Consensus 239 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 318 (1041)
++.+.+.+.+++++...+..++..+.+.|++.. +.+++..++-+|.......+-.+.. ....+.++=-.|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 344444555566666666666666666665433 2334444555554444433333322 222233333333321
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001632 319 FAPEEVTYSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEME 385 (1041)
Q Consensus 319 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 385 (1041)
=...+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0012444555566666666666665553221 11122334555555555544444444443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.88 E-value=4.9 Score=40.89 Aligned_cols=78 Identities=8% Similarity=0.053 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 001632 664 EVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATA-----QGCALDAVAISIL 738 (1041)
Q Consensus 664 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~~~~~~~~~l 738 (1041)
.++..++..+..+|+.+.+...++.+....|-+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 36677888999999999999999998888899999999999999999999999999998865 4778877776665
Q ss_pred HHH
Q 001632 739 VNT 741 (1041)
Q Consensus 739 ~~~ 741 (1041)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 555
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.56 E-value=1.3 Score=28.16 Aligned_cols=27 Identities=22% Similarity=0.237 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 928 HVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 928 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
.+..++..|...|++++|++.+++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455667777777777777777777665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=87.33 E-value=50 Score=36.24 Aligned_cols=182 Identities=16% Similarity=0.168 Sum_probs=109.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 001632 818 SLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSL 897 (1041)
Q Consensus 818 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 897 (1041)
+.|....-+++..++...++.-.+.+..+|...| -+...|..++.+|... ..+.-..+|+++.+.. -.|.+.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d-fnDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD-FNDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc-chhHHHHHHH
Confidence 3555666677777777777777778888887764 3566777777887777 3466677777777752 2344444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC--C---hhHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 001632 898 VQAYTEAAKYSEAEETINSMQKQGIPP--S---CTHVNHLLSAFSKAGLMAEATRVYNESLA-AGIIPDLACYRTMLKGY 971 (1041)
Q Consensus 898 ~~~~~~~g~~~~A~~~~~~~~~~~~~p--~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~ 971 (1041)
+.-|. .++.+++..+|..+...-++. + ...|.-|...- -.+.+.-..+..+..+ .|...-.+.+.-+-.-|
T Consensus 139 a~~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 44444 377777777777777542221 1 11333333211 2355555555555543 23232344444455556
Q ss_pred HhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 001632 972 MDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYR 1006 (1041)
Q Consensus 972 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 1006 (1041)
....++.+|++++.-+.+....|.-+...++.-+.
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 66778888888888777777777666666655443
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.31 E-value=42 Score=35.29 Aligned_cols=78 Identities=12% Similarity=0.154 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcC----------
Q 001632 944 EATRVYNESLAAGIIPDLACYRTMLKGYMD----HGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAG---------- 1009 (1041)
Q Consensus 944 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------- 1009 (1041)
.|...|.++-..+ +......+...|.. ..++++|..+|+++.+... ......+. ++...|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~ 246 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLT 246 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcc
Confidence 5666666655543 22222233333321 2256666666666555333 33444444 333333
Q ss_pred -----ChhHHHHHHHHhhccCcc
Q 001632 1010 -----KEHEANDILDSMNSVRIP 1027 (1041)
Q Consensus 1010 -----~~~eA~~~~~~~~~~~~~ 1027 (1041)
+...|...+......+.+
T Consensus 247 ~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 247 AAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred cccCCCHHHHHHHHHHHHHcCCh
Confidence 556666666666555553
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=86.57 E-value=11 Score=35.05 Aligned_cols=12 Identities=17% Similarity=0.127 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhc
Q 001632 928 HVNHLLSAFSKA 939 (1041)
Q Consensus 928 ~~~~l~~~~~~~ 939 (1041)
++.+++.+|...
T Consensus 71 Alw~lGnA~ts~ 82 (186)
T PF06552_consen 71 ALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555555443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=86.33 E-value=41 Score=34.28 Aligned_cols=135 Identities=15% Similarity=0.232 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 001632 409 YEDAQKTFAETEQ-LGLLSDEKTYLAMAQVHLT-SR-NVEKALDVIELMKSR-NMWLSRFAYIVMLQCYVMKEDLGSAEG 484 (1041)
Q Consensus 409 ~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~-~~-~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~ 484 (1041)
+.+|.++|+.... ..+--|..+...+++.... .+ ....-.++.+-+... +..++..+...++..++..+++....+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3455555542111 1233456666666666555 22 233334444444432 457788888899999999999999999
Q ss_pred HHHHHHHc-CC-CChhHHHHHHHHHHhcCCHHHHHHHHHH-----HHHcCCCCCHHHHHHHHHHHH
Q 001632 485 TFQTLAKT-GL-PDAGSCNDMLNLYIKLDLTEKAKGFIAH-----IRKDQVDFDEELYRSVMKIYC 543 (1041)
Q Consensus 485 ~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~-----~~~~~~~~~~~~~~~ll~~~~ 543 (1041)
++...... ++ .|...|..+++.....|+..-...++++ +.+.++..+..+-.++-..|.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 99988776 44 6899999999999999998877777665 234466666666665554443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.82 E-value=1.4e+02 Score=39.94 Aligned_cols=86 Identities=6% Similarity=-0.045 Sum_probs=53.0
Q ss_pred HHHHhccCCHHHHHHHHHHhhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHccCCH
Q 001632 670 IGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISI-LVNTLTNHGKH 748 (1041)
Q Consensus 670 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-l~~~~~~~g~~ 748 (1041)
+......|+++.|...|+.+....++....++.++......|.++..+...+....+ ..+....++. -+.+-++.+++
T Consensus 1456 il~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1456 ILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred HHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcch
Confidence 334456688888888888877666666777777666666677777766655555443 1222223322 24445777777
Q ss_pred HHHHHHHH
Q 001632 749 EQAEIIIH 756 (1041)
Q Consensus 749 ~~A~~~~~ 756 (1041)
+.....+.
T Consensus 1535 D~~e~~l~ 1542 (2382)
T KOG0890|consen 1535 DLLESYLS 1542 (2382)
T ss_pred hhhhhhhh
Confidence 77666644
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.80 E-value=4.5 Score=36.25 Aligned_cols=82 Identities=11% Similarity=0.094 Sum_probs=57.9
Q ss_pred HHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHH
Q 001632 928 HVNHLLSAF---SKAGLMAEATRVYNESLAAGIIPDLACYR-TMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVH 1003 (1041)
Q Consensus 928 ~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 1003 (1041)
..+.|++.. ...++.+++..++..|.- +.|+..-.. .-++.++..|++.+|+.+|..+.+..+..+..-..++.
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~ 86 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLAL 86 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHH
Confidence 445555433 347888999998888875 567544332 23456788899999999999988776666777777777
Q ss_pred HHHhcCCh
Q 001632 1004 LYRYAGKE 1011 (1041)
Q Consensus 1004 ~~~~~g~~ 1011 (1041)
++...|+-
T Consensus 87 CL~al~Dp 94 (153)
T TIGR02561 87 CLNAKGDA 94 (153)
T ss_pred HHHhcCCh
Confidence 77777764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.52 E-value=7.1 Score=39.51 Aligned_cols=103 Identities=15% Similarity=0.200 Sum_probs=60.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH
Q 001632 213 GCEPDEIACGTMLCTYARWGNHKAMLTFYSAVKER---GIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDF 289 (1041)
Q Consensus 213 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 289 (1041)
|...+..+...++..-....+.+.+...+-+++.. ...++... ...++.+. .-+.++++.++..-++.|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 33334444444454444455566666665555432 11222111 12222222 234557777777778888888888
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 001632 290 TYTLVISSFVKGSLLEEALKTFNEMKST 317 (1041)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 317 (1041)
+++.+|+.+.+.+++.+|.++...|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888877776654
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=83.89 E-value=1.4 Score=26.05 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH
Q 001632 997 IMSAAVHLYRYAGKEHEANDILD 1019 (1041)
Q Consensus 997 ~~~~l~~~~~~~g~~~eA~~~~~ 1019 (1041)
....++.++...|+.++|+.+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45567777777777777777765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.87 E-value=3 Score=42.38 Aligned_cols=90 Identities=13% Similarity=0.065 Sum_probs=65.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCh
Q 001632 932 LLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKE 1011 (1041)
Q Consensus 932 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 1011 (1041)
-+.-|.++|.+++|+.-|.+.+.. .+.+++++..-..+|.+...|..|..-...+......-.-+|+.-+.+-...|+.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~-~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV-YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc-CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 356789999999999999998874 3338888888888999998888888777776665444444555555555566666
Q ss_pred hHHHHHHHHhh
Q 001632 1012 HEANDILDSMN 1022 (1041)
Q Consensus 1012 ~eA~~~~~~~~ 1022 (1041)
.||.+=.+..+
T Consensus 182 ~EAKkD~E~vL 192 (536)
T KOG4648|consen 182 MEAKKDCETVL 192 (536)
T ss_pred HHHHHhHHHHH
Confidence 66665554443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.76 E-value=95 Score=36.25 Aligned_cols=102 Identities=9% Similarity=0.006 Sum_probs=60.1
Q ss_pred hhhhccCcccHHHHHHHHHHHhhcCC---chhHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 001632 605 MLSLYLTDDNFSKREKILKLLLHTAG---GSSVVSQLICKFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKE 681 (1041)
Q Consensus 605 ~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 681 (1041)
-+.+.++.+.+++|+.+.+......+ -...+...|..+...|+.++|-...-.-...+..-+.--+..+...++...
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 35677888999999999998887766 456778888888888988888653322222233333333333333333221
Q ss_pred HHHHHHHhhcCCC-CChHHHHHHHHHHHh
Q 001632 682 AQDVFKAATVSCK-PGKLVLRSMIDAYAK 709 (1041)
Q Consensus 682 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 709 (1041)
++.-+..+.+ .+...|..++..+..
T Consensus 442 ---Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 442 ---IAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ---hhccCCCCCcccCchHHHHHHHHHHH
Confidence 2222222222 345567776666665
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.72 E-value=61 Score=34.02 Aligned_cols=182 Identities=16% Similarity=0.105 Sum_probs=113.8
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHH----c
Q 001632 798 RGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGK----AGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAA----A 869 (1041)
Q Consensus 798 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~ 869 (1041)
..+++..+.+.+......+. ......+...|.. ..+..+|...|+.+.+.|. ......|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcc
Confidence 45667777777777766432 2333334444443 4467889999998777654 2233445666654 3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh----
Q 001632 870 GLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAA-------KYSEAEETINSMQKQGIPPSCTHVNHLLSAFSK---- 938 (1041)
Q Consensus 870 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---- 938 (1041)
.|..+|.++|.+..+.|..+...+...+...|..-+ +...|...|.++-+.+ +......|+..|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 488999999999999876554333444555454331 2347899999988876 44555666666643
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------------ChHHHHHHHHHHHhccC
Q 001632 939 AGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHG---------------YIEEGINLFEEVRESSE 992 (1041)
Q Consensus 939 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~ 992 (1041)
..+.++|...|++.-+.|. ......+. .+...| +...|..++........
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 3388999999999998765 22222233 445554 66666666666555433
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.67 E-value=2 Score=28.93 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhc
Q 001632 996 FIMSAAVHLYRYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 996 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 1023 (1041)
.+++.++.+|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777777654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=83.56 E-value=12 Score=33.70 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001632 890 NSFTYLSLVQAY---TEAAKYSEAEETINSMQKQGIPPSCT-HVNHLLSAFSKAGLMAEATRVYNESLAA 955 (1041)
Q Consensus 890 ~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 955 (1041)
+....+.|+... ...++.++++.+++.|.- +.|+.. .-..-+..+...|+|++|+++++++.+.
T Consensus 6 s~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 6 SNRLLGGLIEVLMYALRSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 444555555543 468999999999999998 456654 3334567788899999999999999874
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=82.99 E-value=10 Score=40.62 Aligned_cols=129 Identities=13% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCH
Q 001632 863 INVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLM 942 (1041)
Q Consensus 863 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 942 (1041)
|.--...|++-.|-+-+...... .+.+..........+.+.|+++.+.+.+...... +.....+...+++-....|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCh
Q 001632 943 AEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESD 994 (1041)
Q Consensus 943 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 994 (1041)
++|....+.|+...++ ++.........-...|-++++.-.++++....|+.
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.87 E-value=14 Score=35.29 Aligned_cols=78 Identities=9% Similarity=-0.035 Sum_probs=39.8
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCChhHHHHHHHHHHhcCCH
Q 001632 866 YAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQ---GIPPSCTHVNHLLSAFSKAGLM 942 (1041)
Q Consensus 866 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~ 942 (1041)
+.+.|+ ++|.+.|-++...+.-.+......|..- ....+.+++..++-..++. +-.+|+..+.+|+..|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAty-Y~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATY-YTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHH-HHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344444 4555555555555444444444444433 3344556666666665542 1134455556666666666655
Q ss_pred HHH
Q 001632 943 AEA 945 (1041)
Q Consensus 943 ~~A 945 (1041)
+.|
T Consensus 195 e~A 197 (203)
T PF11207_consen 195 EQA 197 (203)
T ss_pred hhh
Confidence 554
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=82.85 E-value=2.3 Score=27.04 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 928 HVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 928 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
.|..++..|...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555555555555555555544
|
... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.45 E-value=2.7 Score=28.26 Aligned_cols=28 Identities=29% Similarity=0.460 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001632 927 THVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 927 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
.+++.|+..|...|++++|+.++++.++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3567777777777777777777777654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.29 E-value=11 Score=41.94 Aligned_cols=151 Identities=16% Similarity=0.131 Sum_probs=99.8
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHcCCHHHHHH
Q 001632 798 RGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEK 877 (1041)
Q Consensus 798 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 877 (1041)
..|+++.|.+++..+. ....+.+++.+.++|..++|+++- +|..- -.....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHH
Confidence 3455555554332221 335566777788888888776543 22211 1223357888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001632 878 LIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGI 957 (1041)
Q Consensus 878 ~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 957 (1041)
+..+. .+..-|..|..+....|++..|.+.+....+ |..|+.++...|+-+.-..+-....+.|.
T Consensus 659 la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 77654 3567788999999999999999888887665 34677777788887766666666666543
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001632 958 IPDLACYRTMLKGYMDHGYIEEGINLFEEVR 988 (1041)
Q Consensus 958 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 988 (1041)
. | ...-+|...|+++++++++....
T Consensus 724 ~-N-----~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 724 N-N-----LAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred c-c-----hHHHHHHHcCCHHHHHHHHHhcC
Confidence 2 2 23345667899999998887753
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.70 E-value=1.3e+02 Score=36.42 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 001632 699 VLRSMIDAYAKCGKAEDVYLLYKEATAQ 726 (1041)
Q Consensus 699 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 726 (1041)
-|..|+..|...|..++|+++|.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4778889999999999999999998874
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=81.29 E-value=13 Score=36.52 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhccC
Q 001632 995 KFIMSAAVHLYRYAGKEHEANDILDSMNSVR 1025 (1041)
Q Consensus 995 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 1025 (1041)
..+++.++.+..+.|+.++|.+.+.++...+
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3556667777777777777777777766543
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=81.25 E-value=46 Score=33.95 Aligned_cols=118 Identities=13% Similarity=0.054 Sum_probs=67.1
Q ss_pred cCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHh-cCC-hHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCChhH
Q 001632 196 VGKIKLAEQTFLEMLE-AGCEPDEIACGTMLCTYAR-WGN-HKAMLTFYSAVK-ERGIVPSTAVFNFMLSSLHKKSYHRK 271 (1041)
Q Consensus 196 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~-~g~-~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~ 271 (1041)
+..+-+|+++|+.... ..+--|..+...+++.... .+. ...-.++.+-+. +.+-.++..+.-.++..+++.+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3344566666653211 2234455555555555544 221 222222222222 23456667777777777777777777
Q ss_pred HHHHHHHHhhC-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 001632 272 VIDLWRQMMDK-GVAPTDFTYTLVISSFVKGSLLEEALKTFNE 313 (1041)
Q Consensus 272 a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 313 (1041)
..++++.-... +...|...|..+|......|+..-...+.++
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 77777766554 4455667777777777777777666665543
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=80.86 E-value=18 Score=29.96 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHH
Q 001632 944 EATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIM 998 (1041)
Q Consensus 944 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 998 (1041)
+..+-+..+....+-|++.+..+.+++|.+.+|+.-|+.+++.+..+..+...+|
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y 82 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIY 82 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHH
Confidence 5556666666666778888888888888888888888888888777655443343
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=80.59 E-value=2.2 Score=26.77 Aligned_cols=27 Identities=15% Similarity=0.162 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhc
Q 001632 997 IMSAAVHLYRYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 997 ~~~~l~~~~~~~g~~~eA~~~~~~~~~ 1023 (1041)
++..++.+|...|++++|.+.++++.+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456778888888888888888888764
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.58 E-value=26 Score=34.34 Aligned_cols=85 Identities=12% Similarity=0.103 Sum_probs=51.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChH
Q 001632 901 YTEAAKYSEAEETINSMQKQGIPPSC-THVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYR-TMLKGYMDHGYIE 978 (1041)
Q Consensus 901 ~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~ 978 (1041)
|....+++.|...|.+.+. +.|+. .-|..-+.++.+..+++.+.+-..+.++ +.|+.+--. .+.........+.
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 3444556666666666665 34555 3455666777777777777777777766 455544322 2333455666677
Q ss_pred HHHHHHHHHHh
Q 001632 979 EGINLFEEVRE 989 (1041)
Q Consensus 979 ~A~~~~~~~~~ 989 (1041)
+|+..++++..
T Consensus 96 eaI~~Lqra~s 106 (284)
T KOG4642|consen 96 EAIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHHH
Confidence 77777777644
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.36 E-value=42 Score=36.51 Aligned_cols=118 Identities=17% Similarity=0.139 Sum_probs=79.1
Q ss_pred CHHHHHHH-HHHHHhcCCHHHHHHHHHHHHH---CCC--CC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHH------
Q 001632 890 NSFTYLSL-VQAYTEAAKYSEAEETINSMQK---QGI--PP---SCTHVNHLLSAFSKAGLMAEATRVYNESLA------ 954 (1041)
Q Consensus 890 ~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~---~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------ 954 (1041)
|...+..| .+.+.-.|++.+|.+++...-- .|. .| ++..||+|+-...+.|.+.-+..+|.+++.
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 44443333 3446678899999888765442 221 12 334567887777777877777777777663
Q ss_pred -CCCCCCH-----------HHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHHHHhc
Q 001632 955 -AGIIPDL-----------ACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYA 1008 (1041)
Q Consensus 955 -~~~~p~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1008 (1041)
.|++|.. .+|++ .-.|...|+.-.|.+-|.+.......+|..|..|+.++...
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hccCCCCcceehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3555432 22332 33566889999999999999888899999999999988753
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=80.18 E-value=11 Score=30.77 Aligned_cols=52 Identities=12% Similarity=0.210 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 001632 942 MAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSES 993 (1041)
Q Consensus 942 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 993 (1041)
.=++.+-++.+...++-|++.+..+.+++|.+.+|+.-|+.+++.+..+...
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~ 74 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA 74 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC
Confidence 3355555566655566677777777777777777777777777766655443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=80.12 E-value=1.3e+02 Score=35.46 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=21.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001632 704 IDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTL 742 (1041)
Q Consensus 704 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~ 742 (1041)
..++.-+|+++.|++.+-+ ..+...|.+.+.+.+.-+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~ 301 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYY 301 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHc
Confidence 3445668999999988877 222234566655555443
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=80.09 E-value=3.7 Score=26.03 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccC
Q 001632 963 CYRTMLKGYMDHGYIEEGINLFEEVRESSE 992 (1041)
Q Consensus 963 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 992 (1041)
+|..+...|...|++++|+..|+++.+..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455666777788888888888888776555
|
... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 84.1 bits (207), Expect = 2e-16
Identities = 104/654 (15%), Positives = 189/654 (28%), Gaps = 186/654 (28%)
Query: 475 MKEDLGSAEGTFQTLAKTGLPD---AGSCNDMLNLYIKLDLTEKAKGFIAHIRKDQVDFD 531
M + G + ++ + C D+ + K L+++ I HI D
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD-MPKSILSKEE---IDHIIM-SKDAV 61
Query: 532 EELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKF----IQTFCKILHGGCTENAEF 587
R + + ++FVEE+ + + KF I+T + E
Sbjct: 62 SGTLR-LFWTLLSKQEEM-VQKFVEEVLR----INYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 588 GDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKL-------------LLHTAGGS-- 632
D+ NQ+ N S+ + LKL L+ GS
Sbjct: 116 RDRLYNDNQV------------FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 633 SVVSQLICKFIRDGMRLTFK-FLMKLG----------------YILDDEVTASLIGSYGK 675
+ V+ +C + ++ FK F + L Y +D T+ S
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 676 HQKLKEAQDVFKAATVSCKPGK---LVLR-----SMIDAYA-KCGKAEDVYLL---YKEA 723
++ Q + + KP + LVL +A+ C K LL +K+
Sbjct: 224 KLRIHSIQAELRR-LLKSKPYENCLLVLLNVQNAKAWNAFNLSC-KI----LLTTRFKQV 277
Query: 724 TAQGCALDAVAISI--LVNTLTNHGKHEQAEI---IIHNSFQDNLDLDTVAYNTCIKAML 778
T A IS+ TLT E + + QD L + + N +++
Sbjct: 278 TDFLSAATTTHISLDHHSMTLT---PDEVKSLLLKYLDCRPQD-LPREVLTTNPRRLSII 333
Query: 779 GAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTH 838
+ + ++ KL +E L + K + L F
Sbjct: 334 AE-SIRDGLATWDNWKHVNC-DKLTTIIESS--LNVLEPAEYRKMFDRLSVF-------- 381
Query: 839 EASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGF---SPNSFTY- 894
I ++ ++ + ++V ++ + + P T
Sbjct: 382 ----------PPSAH---IPTILL-SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 895 -----------------L--SLVQAYTEAAKYSEAEETINSMQKQGIPPS-----CTHVN 930
L S+V Y + IPP +H+
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFD---------SDDLIPPYLDQYFYSHIG 478
Query: 931 HLLSAFSKAGLMAEATRVY-----------NESLA----AGIIPDLACYRTMLKGYMDHG 975
H L M V+ ++S A I+ L LK Y
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL----QQLKFYKP-- 532
Query: 976 YIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEANDILDSMNSVRIPFM 1029
YI + +E + + F+ +L + D+ +RI M
Sbjct: 533 YICDNDPKYERLVNAIL--DFLPKIEENLIC-----SKYTDL------LRIALM 573
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 79.9 bits (196), Expect = 3e-15
Identities = 89/617 (14%), Positives = 180/617 (29%), Gaps = 168/617 (27%)
Query: 46 DGSDITKPKPRSKNRKR----PLSDDNARRIL-----KAKAQYL----SVLRRNQGPTAA 92
D D+ K + + R+ K + VLR N +
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 93 TPKWIKRTPEQMVKYLEDDRN-----GHLYGKHVV-------AAIKAVRAMDGSRNVRVV 140
K +R P M + + R+ ++ K+ V +A+ + ++NV +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 141 -MGSFVGKLSFREMCVVLKEQKGWRQATEFF---AWMKLQLSYRPCVVAYTILLRLYGQV 196
+ GK + V L ++ + W+ L+ P V +L +L Q+
Sbjct: 157 GVLGS-GK-T----WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV-LEMLQKLLYQI 209
Query: 197 GK-----------IKL---AEQTFLEMLEAG-------------CEPD-----EIACGTM 224
IKL + Q L L ++C +
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 225 LCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLS---SLHKKSYHRKVIDLWRQMMD 281
L T K + F SA I SL K + DL R++
Sbjct: 270 LTT-----RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV-- 322
Query: 282 KGVAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDE 341
P +S + + L T++ K + +I S+ + E
Sbjct: 323 LTTNP------RRLSII--AESIRDGLATWDNWKHVNCD----KLTTIIESSLNVLEPAE 370
Query: 342 ALSLYKDM---RSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGL 398
++ + IP+ LLSL + + S + + +++ K ++
Sbjct: 371 YRKMFDRLSVFPPSAHIPT-----ILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQPKES 424
Query: 399 LIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVH---LTSRNVEKALDVIELMK 455
I I +Y + + +H + N+ K D +L+
Sbjct: 425 TISIP---SIYLELKVKLEN---------------EYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 456 SR--NMWLSRFAYIVMLQCYVMKE-DLGSAEGTFQTL--------AK---TGLPDAGSCN 501
+ +++I + +K + F+ + K +
Sbjct: 467 PYLDQYF---YSHIG----HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA-WNASG 518
Query: 502 DMLNLYIKLDLTEKAKGFIAHIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKN 561
+LN +L + +I + ++ +V F+ ++ +N
Sbjct: 519 SILNTLQQLKFYKP------YICDNDPKYER--------------LVNAILDFLPKIEEN 558
Query: 562 GSLKDSKFIQTFCKILH 578
L SK + +L
Sbjct: 559 --LICSK----YTDLLR 569
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 3e-11
Identities = 111/722 (15%), Positives = 208/722 (28%), Gaps = 239/722 (33%)
Query: 264 HKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSL-------LEEALK---TFNE 313
H +H MD + Y ++S F + +++ K + E
Sbjct: 1 HHHHHH----------MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE 50
Query: 314 MKSTGFAPEEVTYS-QLISLSIKHGKS------DEALS-----LYKDMRSRGLIPS---- 357
+ + + V+ + +L + + +E L L +++ PS
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 358 NYTCASLLSLYYKNENYSK-ALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTF 416
Y LY N+ ++K +S K + A E+ + I G LG
Sbjct: 111 MYI-EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG--------- 160
Query: 417 AETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMK 476
G KT++A+ +V + V M + WL+
Sbjct: 161 -----SG-----KTWVAL--------DVCLSYKVQCKMDFKIFWLN-------------- 188
Query: 477 EDLGSAEGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKG-FIAHIRKDQVDFDEELY 535
L + L + L ++D ++ ++I+ EL
Sbjct: 189 --LKNCNSPETVLEM-----------LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 536 RSVM-KIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTF---CKILHGGCTENAEFGDKF 591
R + K Y +V +++++K F CKIL T + D
Sbjct: 236 RLLKSKPYENCLLVLL------------NVQNAKAWNAFNLSCKILL--TTRFKQVTDFL 281
Query: 592 VASNQ----LDLMALGL-------MLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLIC 640
A+ LD ++ L +L YL ++L + +I
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT-------TNPRRLSIIA 334
Query: 641 KFIRDGMRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATV---SCK-P- 695
+ IRD T+ + D++T + S + E + +F +V S P
Sbjct: 335 ESIRD-GLATWDNWKHVNC---DKLTTIIESSL-NVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 696 -------------------GKLVLRSMIDAYAKCGKAE--DVYLLYKEATAQGCALDAVA 734
KL S+++ K +YL K AL
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL---- 445
Query: 735 ISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDT-------------VAYNTCIKAMLGAG 781
H I+ H + D D + ++ +K +
Sbjct: 446 -------------HRS--IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH--LKNIEHPE 488
Query: 782 KLHFAASIYE--RMLVYGRGRKLDKALEMFNTARS-LGLSLDEKAYMN-----------L 827
++ ++ R L +K+ +N + S L K Y L
Sbjct: 489 RMTLFRMVFLDFRFL----EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
Query: 828 VSFYGKAGKTHEASLLFSE---------MQEEGIKPGLISYNIIINVYAAAGLYNEVEKL 878
V+ E +L+ S+ M E+ ++ E K
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLLRIALMAEDE------------------AIFEEAHKQ 586
Query: 879 IQ 880
+Q
Sbjct: 587 VQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 1e-10
Identities = 115/749 (15%), Positives = 213/749 (28%), Gaps = 249/749 (33%)
Query: 246 ERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLE 305
+ I+ S + ++ S S ++ ++ V FV+ L
Sbjct: 42 PKSIL-SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ-----------KFVEEVL-- 87
Query: 306 EALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEAL--SLYKDMRSRGLIPSNYTCAS 363
+ Y L+S IK + ++ +Y + R R
Sbjct: 88 -----------------RINYKFLMS-PIKTEQRQPSMMTRMYIEQRDR----------- 118
Query: 364 LLSLYYKNENYSK-ALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQL 422
LY N+ ++K +S K + A E+ + I G LG
Sbjct: 119 ---LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS-------------- 161
Query: 423 GLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMWLSRFAYIVMLQCYVMKEDLGSA 482
G KT++A+ +V + V M + WL+ L +
Sbjct: 162 G-----KTWVAL--------DVCLSYKVQCKMDFKIFWLN----------------LKNC 192
Query: 483 EGTFQTLAKTGLPDAGSCNDMLNLYIKLDLTEKAKG-FIAHIRKDQVDFDEELYRSVM-K 540
L + L ++D ++ ++I+ EL R + K
Sbjct: 193 NSPETVLEM-----------LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 541 IYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTF---CKILHGGCTENAEFGDKFVASNQ- 596
Y +V +++++K F CKIL T + D A+
Sbjct: 242 PYENCLLVLL------------NVQNAKAWNAFNLSCKILL--TTRFKQVTDFLSAATTT 287
Query: 597 ---LDLMALGL-------MLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLICKFIRDG 646
LD ++ L +L YL ++L + +I + IRD
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT-------TNPRRLSIIAESIRD- 339
Query: 647 MRLTFKFLMKLGYILDDEVTASLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDA 706
T+ + D++T + S + E + +F +V
Sbjct: 340 GLATWDNWKHVNC---DKLTTIIESSL-NVLEPAEYRKMFDRLSV--------FP----- 382
Query: 707 YAKCGKAEDVY-------LLYKEATAQGCALDAVAISILVNTLTNHG---KHEQAEII-I 755
+ L++ + ++VN L + K + I I
Sbjct: 383 -------PSAHIPTILLSLIWFDVIKSDV-------MVVVNKLHKYSLVEKQPKESTISI 428
Query: 756 HNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSL 815
+ + L+ + LH SI + Y + D +
Sbjct: 429 PS-----IYLELK------VKLENEYALH--RSIVDH---YNIPKTFD------SDDLIP 466
Query: 816 GLSLDEKAYMNLVSFYG----KAGKTHEASLL------FSEMQEEGIKPGLISYNIIINV 865
LD+ Y S G +L F +++ K I +
Sbjct: 467 -PYLDQYFY----SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ---K--------IRHD 510
Query: 866 YAAAGLYNEVEKLIQAMQ--RDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIP 923
A + +Q ++ + N Y LV A + E E I S
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE-ENLICS------- 562
Query: 924 PSCTHVNHLLSAFSKAGLMAEATRVYNES 952
T + + LMAE ++ E+
Sbjct: 563 -KYTDLLRI-------ALMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 5e-06
Identities = 74/548 (13%), Positives = 146/548 (26%), Gaps = 181/548 (33%)
Query: 522 HIRKDQVDFDEELYRSVMKIYCKEGMVTDAEQFVEEMGKNGSLKDSKFIQTFCK-ILHGG 580
H +DF+ + K+ + + FV+ D K +Q K IL
Sbjct: 1 HHHHHHMDFE----TGEHQYQYKDILSVFEDAFVDNF-------DCKDVQDMPKSIL--- 46
Query: 581 CTENAEFGDKFVASNQLDLMALGLMLSLYLTDDNFSKREKILKLLLHTAGGSSVVSQLIC 640
E + ++ D S ++ LL +V +
Sbjct: 47 --SKEEIDH------------------IIMSKDAVSGTLRLFWTLLSK--QEEMVQK--- 81
Query: 641 KFIRDGMRLTFKFLMKLGYILDDEVTASLIGSY-GKHQKLKEAQDVFKAATVSCKPGKLV 699
F+ + +R+ +KFLM + + + Y + +L VF VS L
Sbjct: 82 -FVEEVLRINYKFLMS-PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 700 LRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSF 759
LR L + A+ +L+ G
Sbjct: 140 LRQA---------------LLELRPAKN---------VLI-----DG------------- 157
Query: 760 QDNLDLDTVAYNTCIKAMLGAGKLHFAASIY-----ERML---VY----GRGRKLDKALE 807
+LG+GK A + + + ++ + LE
Sbjct: 158 -----------------VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 808 MFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSE-MQEEGIKPGLISYNIIINVY 866
M L +D + H ++ + + L+ +++NV
Sbjct: 201 MLQK---LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL---VLLNVQ 254
Query: 867 AAAGLYNEVEKLIQAMQ---------R-----DGFSPNSFTYLSLVQ---AYTEAAKYSE 909
A K A R D S + T++SL T E
Sbjct: 255 NA--------KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP----DE 302
Query: 910 AEE---TINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATR-----------VYNESLAA 955
+ + Q +P N + ++AE+ R V + L
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLS-----IIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 956 GIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGKEHEAN 1015
I + + + + F I + + L + + +
Sbjct: 358 II---ESSLNVLEPAEYRKMFDRLSV--FPP-------SAHIPTILLSLIWFDVIKSDVM 405
Query: 1016 DILDSMNS 1023
+++ ++
Sbjct: 406 VVVNKLHK 413
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 71.0 bits (172), Expect = 1e-12
Identities = 27/196 (13%), Positives = 63/196 (32%), Gaps = 4/196 (2%)
Query: 798 RGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLL---FSEMQEEGIKP 854
LD LS ++ + + A L +++
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163
Query: 855 GLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEA-EET 913
L YN ++ +A G + E+ ++ ++ G +P+ +Y + +Q + + E
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223
Query: 914 INSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMD 973
+ M ++G+ LLS +A ++ +V +P +L+
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
Query: 974 HGYIEEGINLFEEVRE 989
L ++
Sbjct: 284 KDGRVSYPKLHLPLKT 299
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 65.6 bits (158), Expect = 7e-11
Identities = 27/243 (11%), Positives = 68/243 (27%), Gaps = 5/243 (2%)
Query: 168 EFFAWMKLQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFL---EMLEAGCEPDEIACGTM 224
+ + Q + ++ LA + + +
Sbjct: 112 QAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAV 171
Query: 225 LCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKS-YHRKVIDLWRQMMDKG 283
+ +AR G K ++ VK+ G+ P + L + ++ + QM +G
Sbjct: 172 MLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231
Query: 284 VAPTDFTYTLVISSFVKGSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEAL 343
+ +++S + ++L+ K P V S+L+
Sbjct: 232 LKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYP 291
Query: 344 SLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSLFSEMEKFKVAADEVIYGLLIRIY 403
L+ +++ L+ + K E++ + + +
Sbjct: 292 KLHLPLKTLQ-CLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALC 350
Query: 404 GKL 406
L
Sbjct: 351 RAL 353
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 63.7 bits (153), Expect = 2e-10
Identities = 33/321 (10%), Positives = 80/321 (24%), Gaps = 12/321 (3%)
Query: 220 ACGTMLCTYARWGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQM 279
A L R + + ++ P +L K Q
Sbjct: 59 ALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQH 118
Query: 280 MDKGVAPTDFTYTLVISSFVKGSLLEEA---LKTFNEMKSTGFAPEEVTYSQLISLSIKH 336
++ + L A L + + Y+ ++ +
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 337 GKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALS-LFSEMEKFKVAADEVI 395
G E + + ++ GL P + A+ L + + + + +M + + +
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF 238
Query: 396 YGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMK 455
+L+ + + + K L + + A D
Sbjct: 239 TAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY-------AKDGRVSYP 291
Query: 456 SRNMWLSRFAYIVMLQCYVMKEDLGSAEGT-FQTLAKTGLPDAGSCNDMLNLYIKLDLTE 514
++ L + Q ++ TL + A L + L
Sbjct: 292 KLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCR 351
Query: 515 KAKGFIAHIRKDQVDFDEELY 535
+ + ++ + LY
Sbjct: 352 ALRETKNRLEREVYEGRFSLY 372
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 53.3 bits (126), Expect = 4e-07
Identities = 23/235 (9%), Positives = 60/235 (25%), Gaps = 23/235 (9%)
Query: 694 KPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEI 753
P + L ++ + + + + + + A
Sbjct: 89 SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148
Query: 754 II---HNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFN 810
++ H Q L YN + + R + + +
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLG-------------------WARQGAFKELVYVLF 189
Query: 811 TARSLGLSLDEKAYMNLVSFYGKAGKTHEASL-LFSEMQEEGIKPGLISYNIIINVYAAA 869
+ GL+ D +Y + G+ + +M +EG+K + ++++ A
Sbjct: 190 MVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249
Query: 870 GLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPP 924
+ V K+ P L++ + ++
Sbjct: 250 TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLF 304
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 5e-06
Identities = 27/250 (10%), Positives = 67/250 (26%), Gaps = 14/250 (5%)
Query: 769 AYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLV 828
+Y CI + + +Y K + + + + +A
Sbjct: 14 SYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAP-ELQAVRMFA 72
Query: 829 SFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIII-NVYAAAGLYNEVEKLIQAMQRDGF 887
+ + + ++ ++ ++Y + + +
Sbjct: 73 EYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGD---- 128
Query: 888 SPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLS---AFSKAGLMAE 944
+ VQ + + A + + MQ T + + + +
Sbjct: 129 --SLECMAMTVQILLKLDRLDLARKELKKMQD--QDEDATLTQLATAWVSLAAGGEKLQD 184
Query: 945 ATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHL 1004
A ++ E +A P L +M G E + +E + + V L
Sbjct: 185 AYYIFQE-MADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVL 243
Query: 1005 YRYAGKEHEA 1014
++ GK E
Sbjct: 244 SQHLGKPPEV 253
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 6e-06
Identities = 43/250 (17%), Positives = 72/250 (28%), Gaps = 32/250 (12%)
Query: 677 QKLKEAQDVFKAATVSCKPGKLVLRS----MIDAYAKCGKAEDVYLLYKEATAQGCALDA 732
QK+ EA + A K + + YAK A +K A A DA
Sbjct: 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVA------FKNAKQLEQAKDA 58
Query: 733 V--AISILVNTLTNHGKHEQAEII--IHNSFQDNLDLDTV--AYNTCIKAMLGAGKLHFA 786
N N A+ +D + + G A
Sbjct: 59 YLQEAEAHAN---NRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTA 115
Query: 787 ASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDE-----KAYMNLVSFYGKAGKTHEAS 841
A +R L KA+ ++ A ++ + + + + K EA+
Sbjct: 116 AMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAA 175
Query: 842 LLFSE----MQEEGIKPGL-ISYNIIINVYAAAGLYNEVEKLIQ-AMQRDGF--SPNSFT 893
+ +E P + V Y +K ++ + GF S +
Sbjct: 176 ASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAA 235
Query: 894 YLSLVQAYTE 903
L+QAY E
Sbjct: 236 LEDLLQAYDE 245
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 20/168 (11%), Positives = 51/168 (30%), Gaps = 20/168 (11%)
Query: 301 GSLLEEALKTFNEMKSTGFAPEEVTYSQLISLSIKHGKSDEALSLYKDM----RSRGLIP 356
+ + +S A + + Q + + EA+ + G
Sbjct: 56 KDAYLQEAEAHANNRSLFHAAK--AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPD 113
Query: 357 SNYTCASLLSLYYKN-------ENYSKALSLFSEMEKFKVAADEVIYGLLIRIYGKLGLY 409
+ + Y +A ++F E+ + AA+ + G R+ + +
Sbjct: 114 TAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAE--LIGKASRLLVRQQKF 171
Query: 410 EDAQKTFAE----TEQLGLLSDE-KTYLAMAQVHLTSRNVEKALDVIE 452
++A + + +++ K +A V L + A +
Sbjct: 172 DEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 6e-05
Identities = 36/271 (13%), Positives = 75/271 (27%), Gaps = 35/271 (12%)
Query: 706 AYAKCGKAEDVYLL---------YKEA-----TAQGCALDAVAISILVNTLTNHGKHEQA 751
G D + L Y A + + L + A
Sbjct: 110 VLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGA 169
Query: 752 EII--IHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMF 809
+ N F+ + L A + +Y + D+A E +
Sbjct: 170 LNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL------SNFDRAKECY 223
Query: 810 NTARSLGLSLDEK---AYMNLVSFYGKAG---KTHEASLLFSEMQEEGIKPGLISYNIII 863
A L +D K A+ LVS + L +S +E Y + +
Sbjct: 224 KEA----LMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279
Query: 864 NVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIP 923
N + E + ++ G +S L +++ + + + P
Sbjct: 280 NKTSHEDELRRAEDYLSSIN--GLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-P 336
Query: 924 PSCTHVNHLLSAFSKAGLMAEATRVYNESLA 954
+ L++ ++G + + N+ +
Sbjct: 337 YNLDVYPLHLASLHESGEKNKLYLISNDLVD 367
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 1e-04
Identities = 44/304 (14%), Positives = 98/304 (32%), Gaps = 38/304 (12%)
Query: 706 AYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDL 765
+ G E + Q + + +L + + +++ + + N
Sbjct: 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL- 65
Query: 766 DTVAYNTCIKAMLGAGKLHFAASIYERML---------------VYGRGRKLDKALEMFN 810
AY+ G+L A Y L ++ A++ +
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 811 TARSLGLSLD---EKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGL-ISYNIIINVY 866
+A L + +L + G+ EA + + E +P ++++ + V+
Sbjct: 126 SA----LQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE--TQPNFAVAWSNLGCVF 179
Query: 867 AAAGLYNE-VEKLIQAMQRDGFSPNSF-TYLSLVQAYTEAAKYSEAEETINSMQKQGIPP 924
A G + +A+ D PN Y++L EA + A + + P
Sbjct: 180 NAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYL--RALSLSP 234
Query: 925 SCTHV-NHLLSAFSKAGLMAEATRVYNESLAAGIIPDLA-CYRTMLKGYMDHGYIEEGIN 982
+ V +L + + GL+ A Y ++ + P Y + + G + E +
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAED 292
Query: 983 LFEE 986
+
Sbjct: 293 CYNT 296
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 54/299 (18%), Positives = 88/299 (29%), Gaps = 54/299 (18%)
Query: 732 AVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYE 791
+ LV + G++E A + + L+ + G A +
Sbjct: 27 LRTLHNLVIQYASQGRYEVAVPL----CKQALEDL--------EKTSGHDHPDVATMLNI 74
Query: 792 RMLVYGRGRKLDKALEMFNTARSLGLSLDEKAY-----------MNLVSFYGKAGKTHEA 840
LVY K A + N A L++ EK NL YGK GK EA
Sbjct: 75 LALVYRDQNKYKDAANLLNDA----LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA 130
Query: 841 SLLFS---EMQEEGIKPG----LISYNIIINVYAAAGLYNEVEKLIQ---AMQRDGFSPN 890
L E++E+ + N + + G Y EVE Q + + P+
Sbjct: 131 EPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPD 190
Query: 891 ----SFTYLSLVQAYTEAAKYSEAEE----TINSMQKQGIPPSCTHV----NHLLSAFSK 938
+ T +L Y + K+ +AE + ++ H
Sbjct: 191 DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREEC 250
Query: 939 AGLMAEATRVYNESLAAGII----PDLA-CYRTMLKGYMDHGYIEEGINLFEEVRESSE 992
G + T P + + + Y G E L E S +
Sbjct: 251 KGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 18/129 (13%), Positives = 45/129 (34%), Gaps = 10/129 (7%)
Query: 794 LVYGRGRKLDKALEMFNTARSLGLSLDE-----KAYMNLVSFYGKAGKTHEASLLFSE-- 846
L + + A+ F A ++ + +AY + + K GK +A S+
Sbjct: 232 LCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291
Query: 847 --MQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPN-SFTYLSLVQAYTE 903
Q+ G L + + ++Y + ++ ++ + + + + Y E
Sbjct: 292 AYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHE 351
Query: 904 AAKYSEAEE 912
+ +A
Sbjct: 352 RKNFQKASA 360
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 20/128 (15%), Positives = 36/128 (28%), Gaps = 9/128 (7%)
Query: 794 LVYGRGRKLDKALEMFNTARSLGLSLDE----KAYMNLVSFYGKAGKTHEASLLFSE--- 846
Y R A+E F A + K L KAG+T +A E
Sbjct: 230 NSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289
Query: 847 -MQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPN-SFTYLSLVQAYTEA 904
+ K + + VY ++ L+ ++ S + +
Sbjct: 290 HITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESS 349
Query: 905 AKYSEAEE 912
+ +A
Sbjct: 350 CHFEQAAA 357
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1041 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 2e-04
Identities = 37/198 (18%), Positives = 59/198 (29%), Gaps = 21/198 (10%)
Query: 731 DAVAISILVNTLTNHGKHEQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIY 790
AVA S L G+ A + + + AY + A A + Y
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAY 226
Query: 791 ERM---------------LVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAG 835
R VY +D A++ + A L AY NL + + G
Sbjct: 227 LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKG 285
Query: 836 KTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLI-QAMQRDGFSPNSFTY 894
EA S N + N+ G E +L +A++ + +
Sbjct: 286 SVAEA-EDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAH 342
Query: 895 LSLVQAYTEAAKYSEAEE 912
+L + K EA
Sbjct: 343 SNLASVLQQQGKLQEALM 360
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1041 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.97 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.97 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.8 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.78 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.57 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.53 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.51 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.51 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.48 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.48 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.46 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.38 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.38 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.37 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.16 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.1 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.92 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.9 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.89 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.87 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.86 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.81 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.79 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.69 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.66 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.6 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.51 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.5 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.5 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.5 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.48 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.32 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.24 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.23 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.19 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.17 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.16 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.14 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.14 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.13 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.12 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.1 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.04 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.9 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.87 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.82 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.74 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.57 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.49 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.48 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.47 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.48 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.02 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 89.73 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=7.3e-25 Score=169.89 Aligned_cols=208 Identities=18% Similarity=0.142 Sum_probs=166.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHH
Q ss_conf 26896899999999987899989998999999999429987999999999986999994219999999997199879999
Q 001632 798 RGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEK 877 (1041)
Q Consensus 798 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 877 (1041)
..+++++|...+..+.... +.+...+..+...+...|++++|...+++....+. .+...+..+...+.+.|++++|+.
T Consensus 181 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 258 (388)
T d1w3ba_ 181 AQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAID 258 (388)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 2471999999999999849-46499999971552200529999999998577755-479999999999998789999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999983999899989999999992079779999999998779998844899999999923999999999999998898
Q 001632 878 LIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGI 957 (1041)
Q Consensus 878 ~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 957 (1041)
.|++..+. .+.+...+..++.++...|++++|.+.++...... +.+...+..++.++...|++++|++.++++++. .
T Consensus 259 ~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~ 335 (388)
T d1w3ba_ 259 TYRRAIEL-QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-F 335 (388)
T ss_dssp HHHHHHHT-CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-C
T ss_pred HHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-C
T ss_conf 99999984-99989999999999997487999999998654048-730010157999999878999999999999986-8
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 78999999999999814885899999999983168839999999999994199
Q 001632 958 IPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYAGK 1010 (1041)
Q Consensus 958 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 1010 (1041)
+.+...+..++..+...|++++|+..++++.+..|.++.++..++.+|.+.|+
T Consensus 336 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 89899999999999985999999999999997099989999999999998589
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.7e-24 Score=164.77 Aligned_cols=170 Identities=20% Similarity=0.170 Sum_probs=114.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHCCCHHHHHHH
Q ss_conf 89689999999998789998999899999999942998799999999998699999-42199999999971998799999
Q 001632 800 RKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPG-LISYNIIINVYAAAGLYNEVEKL 878 (1041)
Q Consensus 800 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 878 (1041)
|++++|...+....... +.+...+..+...+.+.|++++|...|++..+. .|+ ...+..+...+...|++++|++.
T Consensus 217 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~ 293 (388)
T d1w3ba_ 217 RIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDC 293 (388)
T ss_dssp TCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 52999999999857775-547999999999999878999999999999984--999899999999999974879999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999839998999899999999920797799999999987799988448999999999239999999999999988987
Q 001632 879 IQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGII 958 (1041)
Q Consensus 879 ~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 958 (1041)
++..... .+.+...+..++.++...|++++|+..++++++.. |.+...+..++.+|...|++++|++.++++++. .
T Consensus 294 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~ 369 (388)
T d1w3ba_ 294 YNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--S 369 (388)
T ss_dssp HHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--C
T ss_pred HHHHHCC-CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--C
T ss_conf 9865404-87300101579999998789999999999999868-898999999999999859999999999999970--9
Q ss_pred C-CHHHHHHHHHHHHHCCC
Q ss_conf 8-99999999999981488
Q 001632 959 P-DLACYRTMLKGYMDHGY 976 (1041)
Q Consensus 959 p-~~~~~~~l~~~~~~~g~ 976 (1041)
| +...+..++.+|.+.||
T Consensus 370 P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 370 PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHCCC
T ss_conf 9989999999999998589
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=2.7e-16 Score=115.50 Aligned_cols=272 Identities=13% Similarity=0.032 Sum_probs=128.8
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCH
Q ss_conf 99998233997899999999321799986999999999992499158999999999839998888899999999815998
Q 001632 669 LIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATAQGCALDAVAISILVNTLTNHGKH 748 (1041)
Q Consensus 669 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 748 (1041)
.+..+.+.|++++|...|+.+....|.+...|..++.++...|++++|...|.+..+..+. +...+..+...+...|++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCC
T ss_conf 9999998599999999999999868998999999999999837758899999851002222-222222222222222211
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 88999999850089887756499999999913986589999999998832689689999999998789998999899999
Q 001632 749 EQAEIIIHNSFQDNLDLDTVAYNTCIKAMLGAGKLHFAASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLV 828 (1041)
Q Consensus 749 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 828 (1041)
++|...+.......+......... .... ...+.......+
T Consensus 104 ~~A~~~~~~~~~~~~~~~~~~~~~-~~~~---------------------------------------~~~~~~~~~~~~ 143 (323)
T d1fcha_ 104 RQACEILRDWLRYTPAYAHLVTPA-EEGA---------------------------------------GGAGLGPSKRIL 143 (323)
T ss_dssp HHHHHHHHHHHHTSTTTGGGCC-------------------------------------------------------CTT
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHH-HHHH---------------------------------------HHCCCCCCHHHH
T ss_conf 211100026777361067888766-4000---------------------------------------000010000147
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99994299879999999999869999942199999999971998799999999998399989998999999999207977
Q 001632 829 SFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYS 908 (1041)
Q Consensus 829 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~ 908 (1041)
..+...+...+|...+.+..+.. | ...+...+..++..+...|+++
T Consensus 144 ~~~~~~~~~~~a~~~~~~al~~~--p--------------------------------~~~~~~~~~~l~~~~~~~~~~~ 189 (323)
T d1fcha_ 144 GSLLSDSLFLEVKELFLAAVRLD--P--------------------------------TSIDPDVQCGLGVLFNLSGEYD 189 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS--T--------------------------------TSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--H--------------------------------CCCCCCCCHHHHHHHHHHHHHH
T ss_conf 88887657999999999999971--3--------------------------------0122211103688888888775
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999987799988448999999999239999999999999988987899999999999981488589999999998
Q 001632 909 EAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVR 988 (1041)
Q Consensus 909 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 988 (1041)
+|...++...... +.+...+..++.+|...|++++|++.++++++. .+.+...+..++.+|.+.|++++|+..|+++.
T Consensus 190 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 267 (323)
T d1fcha_ 190 KAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL-QPGYIRSRYNLGISCINLGAHREAVEHFLEAL 267 (323)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCCC-CCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 5002111222222-222111013330122111101378887789988-43249999999999998789999999999999
Q ss_pred HCCCCHH-----------HHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 3168839-----------9999999999941994689999
Q 001632 989 ESSESDK-----------FIMSAAVHLYRYAGKEHEANDI 1017 (1041)
Q Consensus 989 ~~~~~~~-----------~~~~~l~~~~~~~g~~~eA~~~ 1017 (1041)
+..|.+. .++..+..++...|+.+.+...
T Consensus 268 ~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 268 NMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 7097570011245999999999999999982988999999
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=2.5e-15 Score=109.33 Aligned_cols=98 Identities=12% Similarity=0.011 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 99989999999994299879999999999869999942199999999971998799999999998399989998999999
Q 001632 820 DEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQ 899 (1041)
Q Consensus 820 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 899 (1041)
+..++..+...+...|++++|...+++...... -+...|..+..+|...|++++|++.+++..+. .+.+...+..++.
T Consensus 171 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~ 248 (323)
T d1fcha_ 171 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALEL-QPGYIRSRYNLGI 248 (323)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHH-HHCCHHHHHHHHH
T ss_conf 221110368888888877550021112222222-22111013330122111101378887789988-4324999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHH
Q ss_conf 99920797799999999987
Q 001632 900 AYTEAAKYSEAEETINSMQK 919 (1041)
Q Consensus 900 ~~~~~g~~~~A~~~~~~~~~ 919 (1041)
+|...|++++|+..|++.++
T Consensus 249 ~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 249 SCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
T ss_conf 99987899999999999997
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=4.3e-11 Score=82.43 Aligned_cols=194 Identities=11% Similarity=-0.005 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC----CCCHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCCCC----HH
Q ss_conf 899999999942998799999999998699999----421999999999719987999999999983--99989----99
Q 001632 823 AYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPG----LISYNIIINVYAAAGLYNEVEKLIQAMQRD--GFSPN----SF 892 (1041)
Q Consensus 823 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~~~----~~ 892 (1041)
.+..+...+...|+++.+...+........... ...+......+...++...+...+.+.... ..... ..
T Consensus 135 ~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~ 214 (366)
T d1hz4a_ 135 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 214 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 99888789998145666689999988876630024689999888888876466788889999999999873115726999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----CCCCCC-HHHH
Q ss_conf 899999999920797799999999987799988---44899999999923999999999999998----898789-9999
Q 001632 893 TYLSLVQAYTEAAKYSEAEETINSMQKQGIPPS---CTHVNHLLSAFSKAGLMAEATRVYNESLA----AGIIPD-LACY 964 (1041)
Q Consensus 893 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~-~~~~ 964 (1041)
.+..+...+...|++++|...++...+.....+ ...+..++..+...|++++|...+++++. .+..|+ ...+
T Consensus 215 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 294 (366)
T d1hz4a_ 215 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 294 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999999986044898999999999762246667778899999999875879999999999998876426674799999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 99999998148858999999999831688---------39999999999994199468999
Q 001632 965 RTMLKGYMDHGYIEEGINLFEEVRESSES---------DKFIMSAAVHLYRYAGKEHEAND 1016 (1041)
Q Consensus 965 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~eA~~ 1016 (1041)
..+...|...|++++|+..++++.+..+. ....+..+...+...++.+++..
T Consensus 295 ~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 295 LLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 9999999987899999999999999765318299999999999999999986599869999
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2.6e-11 Score=83.85 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=7.5
Q ss_pred HHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999924991589999999998
Q 001632 705 DAYAKCGKAEDVYLLYKEATA 725 (1041)
Q Consensus 705 ~~~~~~g~~~~A~~~~~~~~~ 725 (1041)
..+.+.+.+++|+.+++++++
T Consensus 51 ~~~~~~e~~~~Al~~~~~ai~ 71 (315)
T d2h6fa1 51 AVLQRDERSERAFKLTRDAIE 71 (315)
T ss_dssp HHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
T ss_conf 999958866999999999998
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=2.3e-10 Score=77.82 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=10.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9999999992399999999999999
Q 001632 929 VNHLLSAFSKAGLMAEATRVYNESL 953 (1041)
Q Consensus 929 ~~~l~~~~~~~g~~~~A~~~~~~~~ 953 (1041)
+..++.+|...|++++|.+.+++.+
T Consensus 294 ~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 294 LLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999999998789999999999999
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=7e-12 Score=87.44 Aligned_cols=152 Identities=11% Similarity=0.042 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHH
Q ss_conf 68968999999999878999899989999999994299-87999999999986999994219999999997199879999
Q 001632 799 GRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGK-THEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEK 877 (1041)
Q Consensus 799 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 877 (1041)
.+.+++|++.++.+.+.. |.+...|+....++...|+ +++|+..+++..+...+ +..+|..+...+...|++++|+.
T Consensus 56 ~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~~~l~~~~eAl~ 133 (315)
T d2h6fa1 56 DERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRDPSQELE 133 (315)
T ss_dssp TCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHH
T ss_pred CCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 886699999999999879-8876999999999998376799999999999988774-22689887588885053788998
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC------HHHHHHHHHH
Q ss_conf 9999998399989998999999999207977999999999877999884489999999992399------9999999999
Q 001632 878 LIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGL------MAEATRVYNE 951 (1041)
Q Consensus 878 ~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~ 951 (1041)
.++++.+. -+.+...|..++.++...|++++|++.++.+++.+ +.+...|+.++.++...|. +++|++.+.+
T Consensus 134 ~~~kal~~-dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~ 211 (315)
T d2h6fa1 134 FIADILNQ-DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE 211 (315)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 87555432-10046889988778888886678999999999879-74499998899999874563102354776799999
Q ss_pred HHH
Q ss_conf 998
Q 001632 952 SLA 954 (1041)
Q Consensus 952 ~~~ 954 (1041)
+++
T Consensus 212 al~ 214 (315)
T d2h6fa1 212 MIK 214 (315)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 998
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.48 E-value=2.4e-10 Score=77.67 Aligned_cols=192 Identities=11% Similarity=0.070 Sum_probs=129.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 96899999999987899989998999999999429987999999999986999994219999999997199879999999
Q 001632 801 KLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQ 880 (1041)
Q Consensus 801 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 880 (1041)
..++|..+|+++.....+.+...|..++..+...|+.+.|..+|+++.+.........|..++..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 45999999999998749987999999999998613389999999999987157869999999999998278688999999
Q ss_pred HHHHCCCCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CC
Q ss_conf 99983999899989999999-99207977999999999877999884489999999992399999999999999889-87
Q 001632 881 AMQRDGFSPNSFTYLSLVQA-YTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAG-II 958 (1041)
Q Consensus 881 ~m~~~g~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~ 958 (1041)
.+.+. .+.+...+...+.. +...|+.+.|..+++.+.+. .+.+...|...+..+...|+.++|..+|++.+... ..
T Consensus 159 ~al~~-~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KARED-ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTS-TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHH-CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99980-88867999999999987655778999999999986-10038899999999998698689999999999827898
Q ss_pred CC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH
Q ss_conf 89--9999999999981488589999999998316883
Q 001632 959 PD--LACYRTMLKGYMDHGYIEEGINLFEEVRESSESD 994 (1041)
Q Consensus 959 p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 994 (1041)
|+ ...|...+.--..+|+.+.+..+++++.+..|.+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 68999999999999998499999999999999877110
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.48 E-value=1.6e-12 Score=91.45 Aligned_cols=198 Identities=8% Similarity=-0.051 Sum_probs=124.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 968999999999878999899989-9999999942998799999999998699999421999999999719987999999
Q 001632 801 KLDKALEMFNTARSLGLSLDEKAY-MNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLI 879 (1041)
Q Consensus 801 ~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 879 (1041)
++++|+..+..+.... +.+...+ ......+...++.++|...++...+.... +...|+.+..++...|++++|...+
T Consensus 124 ~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~ 201 (334)
T d1dcea1 124 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 201 (334)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred CHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 2899999999998559-2121111057899987445528999999998871898-7999999999999826889899988
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99998399989998999999999207977999999999877999884489999999992399999999999999889878
Q 001632 880 QAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIP 959 (1041)
Q Consensus 880 ~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 959 (1041)
+...+. .|+. ......+...+..+++...+....... ++....+..++..+...|+.++|+..+.+..+. .+.
T Consensus 202 ~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~ 274 (334)
T d1dcea1 202 RLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPE-NKW 274 (334)
T ss_dssp SSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHH--HHHH---HHHHHHHHHHCCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCH
T ss_conf 776776--8999---999999988244148899999887718-660567887999999986699999999988762-913
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 999999999999814885899999999983168839999999999994
Q 001632 960 DLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRY 1007 (1041)
Q Consensus 960 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1007 (1041)
+..++..++..+...|++++|+..++++.+..|.+...+..+...+.-
T Consensus 275 ~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 275 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 799999999999878999999999999998796639999999999867
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.46 E-value=2.6e-10 Score=77.53 Aligned_cols=152 Identities=13% Similarity=0.175 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHH-HHHCCCHHHHHHHH
Q ss_conf 96899999999987899989998999999999429987999999999986999994219999999-99719987999999
Q 001632 801 KLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINV-YAAAGLYNEVEKLI 879 (1041)
Q Consensus 801 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~~~A~~~~ 879 (1041)
++++|..+|+.+..........+|..++..+.+.|..+.|..+|+++.+.+.. +...|...+.. +...|+.+.|..+|
T Consensus 114 ~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~ 192 (308)
T d2onda1 114 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 38999999999998715786999999999999827868899999999980888-67999999999987655778999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999983999899989999999992079779999999998779-9988--44899999999923999999999999998
Q 001632 880 QAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQG-IPPS--CTHVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 880 ~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
+.+.+. .+.+...+..++..+...|+++.|..+|++..+.. .+|. ...|...+..-...|+.+.+..+++++.+
T Consensus 193 e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 193 ELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999986-10038899999999998698689999999999827898689999999999999984999999999999998
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.38 E-value=1.9e-12 Score=91.11 Aligned_cols=104 Identities=3% Similarity=-0.147 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHCCCCHHHHH
Q ss_conf 3997899999999321799986999999999992499--158999999999839998888899-9999998159988899
Q 001632 676 HQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGK--AEDVYLLYKEATAQGCALDAVAIS-ILVNTLTNHGKHEQAE 752 (1041)
Q Consensus 676 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~g~~~~~~~~~-~l~~~~~~~g~~~~A~ 752 (1041)
.+.+++|..+++.+....|.+...|..+..++...++ +++|...+.++.+.... +...+. .....+...+..++|+
T Consensus 86 ~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al 164 (334)
T d1dcea1 86 AALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEEL 164 (334)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 77899999999999986888679898864899884304289999999999855921-21111057899987445528999
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99998500898877564999999999139
Q 001632 753 IIIHNSFQDNLDLDTVAYNTCIKAMLGAG 781 (1041)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g 781 (1041)
..+..++..++. +...|+.+...+...|
T Consensus 165 ~~~~~~i~~~p~-~~~a~~~l~~~~~~~~ 192 (334)
T d1dcea1 165 AFTDSLITRNFS-NYSSWHYRSCLLPQLH 192 (334)
T ss_dssp HHHHTTTTTTCC-CHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCC-CHHHHHHHHHHHHHHC
T ss_conf 999998871898-7999999999999826
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=4.9e-11 Score=82.07 Aligned_cols=192 Identities=14% Similarity=0.041 Sum_probs=92.8
Q ss_pred HHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CCCCHHHHHHHHHHCCCHH
Q ss_conf 883268968999999999878999899989999999994299879999999999869999-9421999999999719987
Q 001632 795 VYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKP-GLISYNIIINVYAAAGLYN 873 (1041)
Q Consensus 795 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~ 873 (1041)
+|.+.|++++|++.|+++.... +.+..+|+.+..+|.+.|++++|+..|++..+. .| +..++..+..+|...|+++
T Consensus 46 ~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~ 122 (259)
T d1xnfa_ 46 LYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDK 122 (259)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHCCC-CCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998799999999999854349-998899960042788877788752344689998--7611115888999999876679
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC----HHHHHHHH
Q ss_conf 99999999998399989998999999999207977999999999877999884489999999992399----99999999
Q 001632 874 EVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGL----MAEATRVY 949 (1041)
Q Consensus 874 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----~~~A~~~~ 949 (1041)
+|++.++...+. .+.+......+...+...+..+.+..+....... .+....+. ++..+..... .+.+...+
T Consensus 123 ~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 198 (259)
T d1xnfa_ 123 LAQDDLLAFYQD-DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGWN-IVEFYLGNISEQTLMERLKADA 198 (259)
T ss_dssp HHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999865-3000788899999998853587899999876403--14443455-7788888877777899999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHH
Q ss_conf 99998898789-99999999999814885899999999983168839
Q 001632 950 NESLAAGIIPD-LACYRTMLKGYMDHGYIEEGINLFEEVRESSESDK 995 (1041)
Q Consensus 950 ~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 995 (1041)
..... ..|+ ...+..++..+...|++++|+..|+++....|.+.
T Consensus 199 ~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 199 TDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 243 (259)
T ss_dssp CSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred HHHHH--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH
T ss_conf 98664--0845099999999999987899999999999998399779
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=9e-11 Score=80.42 Aligned_cols=58 Identities=12% Similarity=-0.000 Sum_probs=22.6
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999982339978999999993217999869999999999924991589999999998
Q 001632 668 SLIGSYGKHQKLKEAQDVFKAATVSCKPGKLVLRSMIDAYAKCGKAEDVYLLYKEATA 725 (1041)
Q Consensus 668 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 725 (1041)
.++..|.+.|++++|...|+++....|.+..+|+.++.++...|++++|+..|+++..
T Consensus 42 ~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 99 (259)
T d1xnfa_ 42 ERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 99 (259)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999879999999999985434999889996004278887778875234468999
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.16 E-value=1.5e-08 Score=66.34 Aligned_cols=167 Identities=9% Similarity=0.019 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-C----CCCHHHHHHHHHH-CCCHHHHHHHHHHHHHC----CCCC-CH
Q ss_conf 89999999994299879999999999869999-9----4219999999997-19987999999999983----9998-99
Q 001632 823 AYMNLVSFYGKAGKTHEASLLFSEMQEEGIKP-G----LISYNIIINVYAA-AGLYNEVEKLIQAMQRD----GFSP-NS 891 (1041)
Q Consensus 823 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~----~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~----g~~~-~~ 891 (1041)
+|..+..+|.+.|++++|...+++..+..... + ...+..+...|.. .|++++|++.+++..+. +.++ -.
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~ 158 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 99999999998088588899999766776532532058999999888676478789999889999999987337603334
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CC---H
Q ss_conf 98999999999207977999999999877999884------48999999999239999999999999988987-89---9
Q 001632 892 FTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSC------THVNHLLSAFSKAGLMAEATRVYNESLAAGII-PD---L 961 (1041)
Q Consensus 892 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~---~ 961 (1041)
.++..++..+...|++++|...++++......... ..+...+..+...|+++.|.+.+++..+.... ++ .
T Consensus 159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~ 238 (290)
T d1qqea_ 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 68899999999817399999999999986813324555699999999999998465999999999999759774443999
Q ss_pred HHHHHHHHHHHH--CCCHHHHHHHHHHHHH
Q ss_conf 999999999981--4885899999999983
Q 001632 962 ACYRTMLKGYMD--HGYIEEGINLFEEVRE 989 (1041)
Q Consensus 962 ~~~~~l~~~~~~--~g~~~~A~~~~~~~~~ 989 (1041)
.....++.++.. .+.+++|+..|+++..
T Consensus 239 ~~l~~l~~a~~~~d~e~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (290)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 999999999983689999999999988754
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.10 E-value=6.5e-09 Score=68.61 Aligned_cols=18 Identities=22% Similarity=0.137 Sum_probs=7.0
Q ss_pred HHCCCHHHHHHHHHHHHH
Q ss_conf 920797799999999987
Q 001632 902 TEAAKYSEAEETINSMQK 919 (1041)
Q Consensus 902 ~~~g~~~~A~~~~~~~~~ 919 (1041)
...|+++.|...++...+
T Consensus 210 l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 210 LAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHTTCHHHHHHHHHGGGC
T ss_pred HHHCCHHHHHHHHHHHHH
T ss_conf 984659999999999997
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=7.7e-08 Score=61.80 Aligned_cols=121 Identities=12% Similarity=0.030 Sum_probs=87.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999999207977999999999877999884489999999992399999999999999889878999999999999814
Q 001632 895 LSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDH 974 (1041)
Q Consensus 895 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 974 (1041)
...+..|.+.|++++|+..|+++++.+ |.+...|..++.+|...|++++|+..|+++++. .+.+...|..++.++...
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~-~p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-DKKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHC
T ss_conf 999999999589999999866021100-011333245678887405421288889999987-544668779999999994
Q ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HCCCHHHHHHH
Q ss_conf 88589999999998316883999999999999--41994689999
Q 001632 975 GYIEEGINLFEEVRESSESDKFIMSAAVHLYR--YAGKEHEANDI 1017 (1041)
Q Consensus 975 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~eA~~~ 1017 (1041)
|++++|+..++++....|.+..+...+..+.. ..+.+++|...
T Consensus 92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999998999987299979999999999999998989999757
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=3.7e-07 Score=57.46 Aligned_cols=93 Identities=15% Similarity=0.174 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 99999999988326896899999999987899989998999999999429987999999999986999994219999999
Q 001632 786 AASIYERMLVYGRGRKLDKALEMFNTARSLGLSLDEKAYMNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINV 865 (1041)
Q Consensus 786 A~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 865 (1041)
|..+|.+...+...|++++|++.|..+. +++..+|..+..+|...|++++|+..|++.++... -+...|..+..+
T Consensus 5 ~~~l~~~g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~ 79 (192)
T d1hh8a_ 5 AISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGML 79 (192)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCC----CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_conf 9999999999998779999999998648----98899999999999985891467878999999855-234667889999
Q ss_pred HHHCCCHHHHHHHHHHHH
Q ss_conf 997199879999999999
Q 001632 866 YAAAGLYNEVEKLIQAMQ 883 (1041)
Q Consensus 866 ~~~~g~~~~A~~~~~~m~ 883 (1041)
|.+.|++++|++.|++..
T Consensus 80 ~~~~g~~~~A~~~~~kAl 97 (192)
T d1hh8a_ 80 YYQTEKYDLAIKDLKEAL 97 (192)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHH
T ss_conf 985424999999999999
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=2.2e-07 Score=58.86 Aligned_cols=125 Identities=10% Similarity=-0.027 Sum_probs=67.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 99999719987999999999983999899989999999992079779999999998779998844899999999923999
Q 001632 863 INVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLM 942 (1041)
Q Consensus 863 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 942 (1041)
...+...|++++|++.|.++ .+++..++..++.+|...|++++|+..|++.++.+ +.....|..++.++.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHC----CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCH
T ss_conf 99999877999999999864----89889999999999998589146787899999985-52346678899999854249
Q ss_pred HHHHHHHHHHHHCCC--------------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 999999999998898--------------789-99999999999814885899999999983168
Q 001632 943 AEATRVYNESLAAGI--------------IPD-LACYRTMLKGYMDHGYIEEGINLFEEVRESSE 992 (1041)
Q Consensus 943 ~~A~~~~~~~~~~g~--------------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 992 (1041)
++|+..|++.++... ..+ ..++..+..++...|++++|+..++.+....+
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 99999999999867267367899866543630588999999999997899999999999983699
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.87 E-value=4.4e-08 Score=63.34 Aligned_cols=92 Identities=12% Similarity=-0.062 Sum_probs=33.9
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999994299879999999999869999942199999999971998799999999998399989998999999999207
Q 001632 826 NLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAA 905 (1041)
Q Consensus 826 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g 905 (1041)
.....|.+.|++++|+..|++.++... .+...|..+..+|.+.|++++|+..|++..+. .+.+...|..++.+|...|
T Consensus 9 ~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l-~p~~~~a~~~lg~~~~~l~ 86 (201)
T d2c2la1 9 EQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALEL-DGQSVKAHFFLGQCQLEME 86 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCC
T ss_conf 999999986999999999999998599-98999981789874100000124788888871-8873899999999999879
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 97799999999987
Q 001632 906 KYSEAEETINSMQK 919 (1041)
Q Consensus 906 ~~~~A~~~~~~~~~ 919 (1041)
++++|+..++.+.+
T Consensus 87 ~~~~A~~~~~~al~ 100 (201)
T d2c2la1 87 SYDEAIANLQRAYS 100 (201)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
T ss_conf 99999999999987
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.86 E-value=1.2e-08 Score=66.87 Aligned_cols=25 Identities=20% Similarity=0.085 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 8999999999429987999999999
Q 001632 823 AYMNLVSFYGKAGKTHEASLLFSEM 847 (1041)
Q Consensus 823 ~~~~l~~~~~~~g~~~~A~~~~~~m 847 (1041)
.|..+..+|.+.|++++|+..|++.
T Consensus 40 ~~~~lg~~y~~~~~~~~Ai~~~~~a 64 (201)
T d2c2la1 40 YYTNRALCYLKMQQPEQALADCRRA 64 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9981789874100000124788888
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=2.1e-07 Score=59.06 Aligned_cols=108 Identities=11% Similarity=0.002 Sum_probs=83.1
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999992079779999999998779998844899999999923999999999999998898789999999999998148
Q 001632 896 SLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHG 975 (1041)
Q Consensus 896 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 975 (1041)
.-+..+...|++++|+..|+++++.+ |.+...|..++.+|...|++++|+..++++++. .+.++..|..++.++...|
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-KPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH-CCCHHHHHHHHHHHHHHCC
T ss_conf 99999999699999999999988619-960134300011011000011210013467774-0220267788999999812
Q ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 858999999999831688399999999999
Q 001632 976 YIEEGINLFEEVRESSESDKFIMSAAVHLY 1005 (1041)
Q Consensus 976 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 1005 (1041)
++++|+..++++.+..|.++.++..+..+-
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 799999999999984989899999999783
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=3.8e-08 Score=63.75 Aligned_cols=21 Identities=14% Similarity=0.044 Sum_probs=6.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHH
Q ss_conf 999999999359899999999
Q 001632 396 YGLLIRIYGKLGLYEDAQKTF 416 (1041)
Q Consensus 396 ~~~li~~~~~~g~~~~A~~~~ 416 (1041)
|+.+...+...|+..+|...|
T Consensus 189 ~~~Lg~~~~~~~~~~~A~~~y 209 (497)
T d1ya0a1 189 YNQLAILASSKGDHLTTIFYY 209 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHH
T ss_conf 999999999869999999999
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=9.1e-07 Score=54.97 Aligned_cols=83 Identities=11% Similarity=-0.028 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 89999999992399999999999999889878999999999999814885899999999983168839999999999994
Q 001632 928 HVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRY 1007 (1041)
Q Consensus 928 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1007 (1041)
.++.++.+|.+.|++++|+..++++++. .|.+..++..++.+|...|++++|+..|+++.+..|.|..+...+..+...
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~-~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALEL-DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9999999988642110110000000100-223103467779999872229999999999997298989999999999999
Q ss_pred CCCH
Q ss_conf 1994
Q 001632 1008 AGKE 1011 (1041)
Q Consensus 1008 ~g~~ 1011 (1041)
.+..
T Consensus 143 ~~~~ 146 (170)
T d1p5qa1 143 IRRQ 146 (170)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=1.9e-06 Score=52.95 Aligned_cols=104 Identities=15% Similarity=0.036 Sum_probs=61.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999997199879999999999839998999899999999920797799999999987799988448999999999239
Q 001632 861 IIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAG 940 (1041)
Q Consensus 861 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 940 (1041)
...+.|.+.|++++|+..|++..+. .+.+...|..++.+|...|++++|...++.+++.+ +.+...|..++.++...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCC
T ss_conf 9999999958999999986602110-00113332456788874054212888899999875-446687799999999949
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 999999999999988987899999999
Q 001632 941 LMAEATRVYNESLAAGIIPDLACYRTM 967 (1041)
Q Consensus 941 ~~~~A~~~~~~~~~~g~~p~~~~~~~l 967 (1041)
++++|+..+++.+.. .+.+...+..+
T Consensus 93 ~~~eA~~~~~~a~~~-~p~~~~~~~~l 118 (159)
T d1a17a_ 93 KFRAALRDYETVVKV-KPHDKDAKMKY 118 (159)
T ss_dssp CHHHHHHHHHHHHHH-STTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-CCCCHHHHHHH
T ss_conf 999999989999872-99979999999
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=3.1e-06 Score=51.60 Aligned_cols=103 Identities=17% Similarity=0.091 Sum_probs=60.2
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999971998799999999998399989998999999999207977999999999877999884489999999992399
Q 001632 862 IINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGL 941 (1041)
Q Consensus 862 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 941 (1041)
-.+.+...|++++|+..|++.++. .+.+...|..+..+|...|++++|+..++.+++.+ +.+...|..++.++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHC-CCHHHHHHHHHHHHHHCCC
T ss_conf 999999969999999999998861-99601343000110110000112100134677740-2202677889999998127
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 99999999999988987899999999
Q 001632 942 MAEATRVYNESLAAGIIPDLACYRTM 967 (1041)
Q Consensus 942 ~~~A~~~~~~~~~~g~~p~~~~~~~l 967 (1041)
+++|+..+++.++. .+.++..+..+
T Consensus 87 ~~~A~~~~~~a~~~-~p~~~~~~~~l 111 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH-EANNPQLKEGL 111 (117)
T ss_dssp HHHHHHHHHHHHTT-CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCCHHHHHHH
T ss_conf 99999999999984-98989999999
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.51 E-value=2.3e-06 Score=52.43 Aligned_cols=88 Identities=11% Similarity=0.065 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 44899999999923999999999999998898789999999999998148858999999999831688399999999999
Q 001632 926 CTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLY 1005 (1041)
Q Consensus 926 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 1005 (1041)
...+..++.++.+.|++++|+..++++++. .+.+...|..++.++...|++++|+..|+++.+..|.+..+...+..+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~-~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEI-DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999998999998640210136665544310-0022367776999999804799999999999985989999999999999
Q ss_pred HHCCCHHHH
Q ss_conf 941994689
Q 001632 1006 RYAGKEHEA 1014 (1041)
Q Consensus 1006 ~~~g~~~eA 1014 (1041)
.......++
T Consensus 156 ~~l~~~~~~ 164 (169)
T d1ihga1 156 QKIKAQKDK 164 (169)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999989999
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.50 E-value=1e-06 Score=54.73 Aligned_cols=93 Identities=12% Similarity=-0.040 Sum_probs=76.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 99999999923999999999999998898789999999999998148858999999999831688399999999999941
Q 001632 929 VNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYA 1008 (1041)
Q Consensus 929 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1008 (1041)
...++..+...|++++|+..+++.+.. .+-+...|..++.++.+.|++++|+..++++.+..|.+...+..++.+|...
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQK-EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 999999999876058999988610112-1111001233545641012587741000001111110000037899999997
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 99468999999830
Q 001632 1009 GKEHEANDILDSMN 1022 (1041)
Q Consensus 1009 g~~~eA~~~~~~~~ 1022 (1041)
|++++|.+.+++..
T Consensus 98 g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 98 HNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
T ss_conf 89999999999981
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.50 E-value=1e-05 Score=48.38 Aligned_cols=80 Identities=14% Similarity=0.014 Sum_probs=38.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 99999999923999999999999998898789999999999998148858999999999831688399999999999941
Q 001632 929 VNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYRYA 1008 (1041)
Q Consensus 929 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1008 (1041)
+.+++.+|...|++++|+..+++.++. .+.+...+..++.++...|++++|+..|+++.+..|.+..+...+..+....
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l-~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGL-DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 984999987762201100022322201-3104889998899998827899999999999985989899999999999999
Q ss_pred C
Q ss_conf 9
Q 001632 1009 G 1009 (1041)
Q Consensus 1009 g 1009 (1041)
+
T Consensus 146 ~ 146 (168)
T d1kt1a1 146 K 146 (168)
T ss_dssp H
T ss_pred H
T ss_conf 8
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=6.7e-07 Score=55.83 Aligned_cols=111 Identities=8% Similarity=0.048 Sum_probs=78.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q ss_conf 9999999920797799999999987799988448999999999239---99999999999998898789-9999999999
Q 001632 895 LSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAG---LMAEATRVYNESLAAGIIPD-LACYRTMLKG 970 (1041)
Q Consensus 895 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 970 (1041)
..+++.+...+++++|++.|+.....+ |.+..++..++.++.+.+ ++++|+.++++++..+..|+ ..++..++.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 779887369999999999999988329-9989999999999998512678999999999998606993199999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 981488589999999998316883999999999999
Q 001632 971 YMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYR 1006 (1041)
Q Consensus 971 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 1006 (1041)
|.+.|++++|+..++++.+..|.+.........+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 999731699999999999769098999999999999
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.48 E-value=5.8e-06 Score=49.88 Aligned_cols=80 Identities=11% Similarity=0.032 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 48999999999239999999999999988987899999999999981488589999999998316883999999999999
Q 001632 927 THVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSAAVHLYR 1006 (1041)
Q Consensus 927 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 1006 (1041)
..+.+++.+|.+.|++++|++.++++++. .+.+..+|..++.++...|++++|+..|+++.+..|.|..+...+..+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~-~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKI-DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99961999999846530111010001000-00001246776899999689999999999999829898999999999999
Q ss_pred H
Q ss_conf 4
Q 001632 1007 Y 1007 (1041)
Q Consensus 1007 ~ 1007 (1041)
+
T Consensus 147 k 147 (153)
T d2fbna1 147 K 147 (153)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=4.1e-05 Score=44.46 Aligned_cols=126 Identities=17% Similarity=0.079 Sum_probs=74.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999999429987999999999986999994219999999997199879999999999839998999899999999920
Q 001632 825 MNLVSFYGKAGKTHEASLLFSEMQEEGIKPGLISYNIIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEA 904 (1041)
Q Consensus 825 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 904 (1041)
......+.+.|++++|+..|++.+..- |....+ ...-......+ ...+|..+..+|.+.
T Consensus 17 ~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~~~~------------~~~~~~~~~~~-------~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 17 KERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF------------SNEEAQKAQAL-------RLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC------------CSHHHHHHHHH-------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCC------------CHHHHHHHCHH-------HHHHHHHHHHHHHHH
T ss_conf 999999999699999999999998875--101000------------35777640646-------799999999998864
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHC
Q ss_conf 7977999999999877999884489999999992399999999999999889878-999999999999814
Q 001632 905 AKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIP-DLACYRTMLKGYMDH 974 (1041)
Q Consensus 905 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~ 974 (1041)
|++++|+..++..++.+ |.+...+..++.+|...|++++|+..|+++++. .| +......+.....+.
T Consensus 76 ~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~~~~ 143 (170)
T d1p5qa1 76 QAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRI 143 (170)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHH
T ss_conf 21101100000001002-231034677799998722299999999999972--989899999999999999
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=2.3e-05 Score=46.06 Aligned_cols=96 Identities=9% Similarity=0.204 Sum_probs=58.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CC-----HHHHHHH
Q ss_conf 99999999920797799999999987799988448999999999239999999999999988987-89-----9999999
Q 001632 894 YLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGII-PD-----LACYRTM 967 (1041)
Q Consensus 894 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~-----~~~~~~l 967 (1041)
+..++..+...|++++|+..|++.++.+ |.+...+..++.+|...|++++|++.++++++.... +. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9999999998599999999999998849-645899986889998818607789999999986801278898899999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99998148858999999999831
Q 001632 968 LKGYMDHGYIEEGINLFEEVRES 990 (1041)
Q Consensus 968 ~~~~~~~g~~~~A~~~~~~~~~~ 990 (1041)
...+...+++++|+..+++....
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHC
T ss_conf 99999938899999999999845
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.23 E-value=1.4e-05 Score=47.48 Aligned_cols=88 Identities=10% Similarity=-0.011 Sum_probs=44.3
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 99999207977999999999877999884489999999992399999999999999889878999999999999814885
Q 001632 898 VQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMDHGYI 977 (1041)
Q Consensus 898 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 977 (1041)
+..+.+.|++++|...++++++.+ |.+...|..++.++.+.|++++|+..++++++. .+.+...+..++..|...|++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML-DPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCHHHHHHHHHHCCCH
T ss_conf 999998760589999886101121-111001233545641012587741000001111-110000037899999997899
Q ss_pred HHHHHHHHHH
Q ss_conf 8999999999
Q 001632 978 EEGINLFEEV 987 (1041)
Q Consensus 978 ~~A~~~~~~~ 987 (1041)
++|++.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999998
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=8.2e-06 Score=48.91 Aligned_cols=93 Identities=12% Similarity=0.010 Sum_probs=50.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q ss_conf 999999971998799999999998399989998999999999207---977999999999877999884-4899999999
Q 001632 861 IIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAA---KYSEAEETINSMQKQGIPPSC-THVNHLLSAF 936 (1041)
Q Consensus 861 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~ 936 (1041)
.+++.+...+++++|.+.|++.... -+.+..++..++.++.+.+ ++++|+.+++++.+.+..|+. .++..++.+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~-~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAA-GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 7988736999999999999998832-999899999999999985126789999999999986069931999999999999
Q ss_pred HHCCCHHHHHHHHHHHHH
Q ss_conf 923999999999999998
Q 001632 937 SKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 937 ~~~g~~~~A~~~~~~~~~ 954 (1041)
...|++++|++.|+++++
T Consensus 83 ~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 997316999999999997
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.17 E-value=4.3e-06 Score=50.71 Aligned_cols=119 Identities=8% Similarity=0.035 Sum_probs=52.2
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHH
Q ss_conf 9207977999999999877999884489999999992399999999999999889878-999999999999814885899
Q 001632 902 TEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIP-DLACYRTMLKGYMDHGYIEEG 980 (1041)
Q Consensus 902 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A 980 (1041)
.+.|++++|+..+++.++.. |.+...+..++.+|+..|++++|...++...+. .| +...+..+...+...+..+++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCCHHH
T ss_conf 88889999999999999978-999999999999999879999999999999986--997389999999999834663789
Q ss_pred HHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf 999999983-1688399999999999941994689999998300
Q 001632 981 INLFEEVRE-SSESDKFIMSAAVHLYRYAGKEHEANDILDSMNS 1023 (1041)
Q Consensus 981 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 1023 (1041)
......... ..|++...+...+..+...|+.++|..+++++.+
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 98754442035864799999999999967998999999999983
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.16 E-value=0.00013 Score=41.31 Aligned_cols=109 Identities=7% Similarity=-0.008 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCHH
Q ss_conf 87999999999983999899989999999992----07977999999999877999884489999999992----39999
Q 001632 872 YNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTE----AAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSK----AGLMA 943 (1041)
Q Consensus 872 ~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 943 (1041)
...+...+...... .+...+..|...|.. ..+...+...++...+.+ +......++..|.. ..+.+
T Consensus 126 ~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 126 FKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHH
T ss_pred HHHHHHHHHHHHCC---CCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCC---CCCCCCCHHHHCCCCCCCCCCHH
T ss_conf 57788875552001---1101044555564068874334220001221132322---22332211312126765431034
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Q ss_conf 999999999988987899999999999981----4885899999999983
Q 001632 944 EATRVYNESLAAGIIPDLACYRTMLKGYMD----HGYIEEGINLFEEVRE 989 (1041)
Q Consensus 944 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 989 (1041)
+|+..|++..+.| ++..+..|...|.. ..+.++|..+|+++.+
T Consensus 200 ~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~ 246 (265)
T d1ouva_ 200 EALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCK 246 (265)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 4454676653036---8999999999998399976189999999999998
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.14 E-value=6.2e-05 Score=43.35 Aligned_cols=73 Identities=18% Similarity=0.201 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q ss_conf 98999999999207977999999999877999884489999999992399999999999999889878-99999999
Q 001632 892 FTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIP-DLACYRTM 967 (1041)
Q Consensus 892 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l 967 (1041)
.++..++.+|.+.|++++|+..++.+++.+ |.+..+|..++.++...|++++|+..|++.++. .| +..+...+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n~~~~~~l 141 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSY 141 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_conf 999619999998465301110100010000-000124677689999968999999999999982--98989999999
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=1.2e-05 Score=47.96 Aligned_cols=92 Identities=16% Similarity=0.118 Sum_probs=47.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHH
Q ss_conf 999999971998799999999998399989998999999999207977999999999877999884-------4899999
Q 001632 861 IIINVYAAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSC-------THVNHLL 933 (1041)
Q Consensus 861 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~ 933 (1041)
.+.+.+...|++++|+..|.+.++. .+.+...+..+..+|.+.|++++|+..++.+++.+ +.+. .+|..++
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKEL-DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHH
T ss_conf 9999999859999999999999884-96458999868899988186077899999999868-012788988999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999923999999999999998
Q 001632 934 SAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 934 ~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
..+...+++++|++.+++.+.
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHH
T ss_conf 999993889999999999984
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.13 E-value=0.00015 Score=40.81 Aligned_cols=79 Identities=13% Similarity=0.081 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 89999999992079779999999998779998844899999999923999999999999998898789999999999998
Q 001632 893 TYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKGYM 972 (1041)
Q Consensus 893 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 972 (1041)
.|..+..+|.+.|++++|+..++.+++.+ |.+...+..++.+|...|++++|+..|+++++. .|.+......+.....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l-~P~n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-NPQNKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
T ss_conf 99849999877622011000223222013-104889998899998827899999999999985-9898999999999999
Q ss_pred H
Q ss_conf 1
Q 001632 973 D 973 (1041)
Q Consensus 973 ~ 973 (1041)
.
T Consensus 144 ~ 144 (168)
T d1kt1a1 144 K 144 (168)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.12 E-value=5.9e-05 Score=43.47 Aligned_cols=79 Identities=10% Similarity=0.018 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 99899999999920797799999999987799988448999999999239999999999999988987899999999999
Q 001632 891 SFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESLAAGIIPDLACYRTMLKG 970 (1041)
Q Consensus 891 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 970 (1041)
...+..+..+|.+.|++++|+..++.+++.+ |.+...|..++.+|...|++++|+..|+++++. .+.+..+...+..+
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l-~p~n~~~~~~l~~~ 154 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-APEDKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
T ss_conf 9999989999986402101366655443100-022367776999999804799999999999985-98999999999999
Q ss_pred H
Q ss_conf 9
Q 001632 971 Y 971 (1041)
Q Consensus 971 ~ 971 (1041)
.
T Consensus 155 ~ 155 (169)
T d1ihga1 155 K 155 (169)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.10 E-value=5e-06 Score=50.28 Aligned_cols=125 Identities=12% Similarity=0.051 Sum_probs=55.2
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHH
Q ss_conf 97199879999999999839998999899999999920797799999999987799988-44899999999923999999
Q 001632 867 AAAGLYNEVEKLIQAMQRDGFSPNSFTYLSLVQAYTEAAKYSEAEETINSMQKQGIPPS-CTHVNHLLSAFSKAGLMAEA 945 (1041)
Q Consensus 867 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 945 (1041)
.+.|++++|+..+++..+. .+.|...+..++..++..|++++|.+.++...+.+ |+ ...+..+..++...+..+++
T Consensus 7 L~~G~l~eAl~~l~~al~~-~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCCHHH
T ss_conf 8888999999999999997-89999999999999998799999999999999869--97389999999999834663789
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH
Q ss_conf 9999999988987899999999999981488589999999998316883
Q 001632 946 TRVYNESLAAGIIPDLACYRTMLKGYMDHGYIEEGINLFEEVRESSESD 994 (1041)
Q Consensus 946 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 994 (1041)
..........+.+++...+......+...|+.++|...++++.+..|..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~ 132 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 132 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf 9875444203586479999999999996799899999999998339999
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.04 E-value=1.5e-05 Score=47.21 Aligned_cols=63 Identities=10% Similarity=0.121 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99999999999889878999999999999814-----------88589999999998316883999999999999
Q 001632 943 AEATRVYNESLAAGIIPDLACYRTMLKGYMDH-----------GYIEEGINLFEEVRESSESDKFIMSAAVHLYR 1006 (1041)
Q Consensus 943 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 1006 (1041)
++|+..++++++. .|.+..+|..++.+|... +++++|...|+++.+..|.+......+.....
T Consensus 58 ~~Ai~~~~kAl~l-~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~k 131 (145)
T d1zu2a1 58 QEAITKFEEALLI-DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK 131 (145)
T ss_dssp HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 8899999998873-0120587766899998701011357889886787631211000259888999999999999
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.90 E-value=0.00041 Score=38.11 Aligned_cols=113 Identities=11% Similarity=0.012 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCH
Q ss_conf 977999999999877999884489999999992----39999999999999988987899999999999981----4885
Q 001632 906 KYSEAEETINSMQKQGIPPSCTHVNHLLSAFSK----AGLMAEATRVYNESLAAGIIPDLACYRTMLKGYMD----HGYI 977 (1041)
Q Consensus 906 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~ 977 (1041)
....+...+...... .+...+..|+..|.. ..+...+...++...+.| +......+...+.. ..++
T Consensus 125 ~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 125 DFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCH
T ss_pred HHHHHHHHHHHHHCC---CCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCC---CCCCCCCHHHHCCCCCCCCCCH
T ss_conf 157788875552001---1101044555564068874334220001221132322---2233221131212676543103
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHCCCC
Q ss_conf 899999999983168839999999999994----1994689999998300696
Q 001632 978 EEGINLFEEVRESSESDKFIMSAAVHLYRY----AGKEHEANDILDSMNSVRI 1026 (1041)
Q Consensus 978 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~ 1026 (1041)
++|+.+|++..+. .++..+..|+.+|.+ ..+.++|.+.+++..+.|-
T Consensus 199 ~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 199 KEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 4445467665303--68999999999998399976189999999999998769
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.87 E-value=0.00022 Score=39.88 Aligned_cols=70 Identities=14% Similarity=0.146 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----HCCCCCCHHH
Q ss_conf 8999999999207977999999999877999884489999999992399999999999999-----8898789999
Q 001632 893 TYLSLVQAYTEAAKYSEAEETINSMQKQGIPPSCTHVNHLLSAFSKAGLMAEATRVYNESL-----AAGIIPDLAC 963 (1041)
Q Consensus 893 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~g~~p~~~~ 963 (1041)
.+..++.++...|++++|+..++.+++.+ |-+...|..++.+|...|+..+|++.|+++. +.|+.|...+
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999999988799057899999999849-8519999999999998557999999999999998998489968999
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.82 E-value=0.00015 Score=40.86 Aligned_cols=62 Identities=18% Similarity=0.120 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHC-----CCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 8999999999239999999999999988-----98789-----99999999999814885899999999983
Q 001632 928 HVNHLLSAFSKAGLMAEATRVYNESLAA-----GIIPD-----LACYRTMLKGYMDHGYIEEGINLFEEVRE 989 (1041)
Q Consensus 928 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 989 (1041)
.|+.++.+|...|++++|.+.+++.+.. ...++ ...+..+..+|...|++++|+..|+++.+
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999982863001576643553043100245544311278775269999988888888999999998
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.74 E-value=0.00053 Score=37.44 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=26.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHC-----CCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999999999207977999999999877-----99988-----44899999999923999999999999998
Q 001632 894 YLSLVQAYTEAAKYSEAEETINSMQKQ-----GIPPS-----CTHVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 894 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
|..+..+|...|++++|...+++.++. ...++ ...++.++.+|...|++++|++.|+++++
T Consensus 58 ~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 58 HAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999982863001576643553043100245544311278775269999988888888999999998
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.57 E-value=0.00051 Score=37.51 Aligned_cols=13 Identities=15% Similarity=0.388 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999998
Q 001632 942 MAEATRVYNESLA 954 (1041)
Q Consensus 942 ~~~A~~~~~~~~~ 954 (1041)
+++|.+.|+++++
T Consensus 102 ~~~A~~~~~kal~ 114 (145)
T d1zu2a1 102 FDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCC
T ss_conf 7876312110002
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.49 E-value=0.00058 Score=37.17 Aligned_cols=79 Identities=8% Similarity=-0.034 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-----CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 489999999992399999999999999889-----8789-9999999999981488589999999998316883999999
Q 001632 927 THVNHLLSAFSKAGLMAEATRVYNESLAAG-----IIPD-LACYRTMLKGYMDHGYIEEGINLFEEVRESSESDKFIMSA 1000 (1041)
Q Consensus 927 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 1000 (1041)
..+..++..+...|++++|+..++++++.. ..++ ..++..+..++.+.|++++|+..++++.+..|.+..++..
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 99999999999977999999999999998865301476478999987268886577398887887798869297999999
Q ss_pred HHHHH
Q ss_conf 99999
Q 001632 1001 AVHLY 1005 (1041)
Q Consensus 1001 l~~~~ 1005 (1041)
+..+.
T Consensus 86 l~~~~ 90 (95)
T d1tjca_ 86 LKYFE 90 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.48 E-value=0.0017 Score=34.17 Aligned_cols=278 Identities=9% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999306988999999998860898879999999999999419968999999999984998779899999999995
Q 001632 151 REMCVVLKEQKGWRQATEFFAWMKLQLSYRPCVVAYTILLRLYGQVGKIKLAEQTFLEMLEAGCEPDEIACGTMLCTYAR 230 (1041)
Q Consensus 151 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 230 (1041)
..+...+.+.|.++.|..+|..+.. |..++..+.+.++++.|.+.+... -+..+|..+...+.+
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~d----------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 81 (336)
T ss_dssp -----------CTTTHHHHHHHTTC----------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCC----------HHHHHHHHHHHCCHHHHHHHHHHC------CCHHHHHHHHHHHHH
T ss_conf 9999999878779999999986789----------999999997031599999999880------889999999999972
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 29937999999999978999789999999999980288438999999996689997899999999999828997999999
Q 001632 231 WGNHKAMLTFYSAVKERGIVPSTAVFNFMLSSLHKKSYHRKVIDLWRQMMDKGVAPTDFTYTLVISSFVKGSLLEEALKT 310 (1041)
Q Consensus 231 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 310 (1041)
......+ .+..............++..|-..|.+++...+++..... -..+...++.++..|++. ...++
T Consensus 82 ~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~----~~~kl 151 (336)
T d1b89a_ 82 GKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF----KPQKM 151 (336)
T ss_dssp TTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT----CHHHH
T ss_pred CCHHHHH-----HHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHH----CHHHH
T ss_conf 7287899-----9999875357887899999998769859999999999757-744467999999999986----94999
Q ss_pred HHHHHHCCCCCCHHH----------HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 999888899978756----------9999999996299478999999998589998898899999999955998899999
Q 001632 311 FNEMKSTGFAPEEVT----------YSQLISLSIKHGKSDEALSLYKDMRSRGLIPSNYTCASLLSLYYKNENYSKALSL 380 (1041)
Q Consensus 311 ~~~m~~~~~~p~~~~----------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 380 (1041)
.+.+......-+... |..++..|.+.|+++.|..++-. ..++.......+..+.+..+++...++
T Consensus 152 ~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~-----~~~~~~~~~~f~e~~~k~~N~e~~~~~ 226 (336)
T d1b89a_ 152 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN-----HPTDAWKEGQFKDIITKVANVELYYRA 226 (336)
T ss_dssp HHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH-----STTTTCCHHHHHHHHHHCSSTHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHH-----CCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 999986023599999999988748749999999855879999999997-----654456699999999724786999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99988689987999999999999935989999999999998599889999999999998059988999999999849999
Q 001632 381 FSEMEKFKVAADEVIYGLLIRIYGKLGLYEDAQKTFAETEQLGLLSDEKTYLAMAQVHLTSRNVEKALDVIELMKSRNMW 460 (1041)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 460 (1041)
+....+. ++.....++......-+.....+.+.+ .++.......++.....+
T Consensus 227 i~~yL~~----~p~~i~~lL~~v~~~~d~~r~V~~~~k----------------------~~~l~li~p~Le~v~~~n-- 278 (336)
T d1b89a_ 227 IQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNYFSK----------------------VKQLPLVKPYLRSVQNHN-- 278 (336)
T ss_dssp HHHHHHH----CGGGHHHHHHHHGGGCCHHHHHHHHHH----------------------TTCTTTTHHHHHHHHTTC--
T ss_pred HHHHHHC----CHHHHHHHHHHHCCCCCHHHHHHHHHH----------------------CCCCHHHHHHHHHHHHCC--
T ss_conf 9999975----999999999985657998999999985----------------------388077999999999818--
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 8988799999999910997679999999
Q 001632 461 LSRFAYIVMLQCYVMKEDLGSAEGTFQT 488 (1041)
Q Consensus 461 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 488 (1041)
+....+++...|...+|.+..++..+.
T Consensus 279 -~~~vn~al~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 279 -NKSVNESLNNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf -099999999998671246789999987
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.47 E-value=0.0075 Score=30.10 Aligned_cols=61 Identities=16% Similarity=0.091 Sum_probs=30.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCC-----CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999992079779999999998779-----9988-44899999999923999999999999998
Q 001632 894 YLSLVQAYTEAAKYSEAEETINSMQKQG-----IPPS-CTHVNHLLSAFSKAGLMAEATRVYNESLA 954 (1041)
Q Consensus 894 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 954 (1041)
+..++..+.+.|++++|...+++..+.. ..++ ..+++.++.++.+.|++++|+..++++++
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999999779999999999999988653014764789999872688865773988878877988
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.48 E-value=0.071 Score=23.90 Aligned_cols=10 Identities=20% Similarity=0.504 Sum_probs=3.3
Q ss_pred HHHHHHHHHH
Q ss_conf 5899999999
Q 001632 977 IEEGINLFEE 986 (1041)
Q Consensus 977 ~~~A~~~~~~ 986 (1041)
.++|..++++
T Consensus 111 ~~~A~~~~~~ 120 (133)
T d1klxa_ 111 EKQAVKTFEK 120 (133)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.02 E-value=0.089 Score=23.30 Aligned_cols=15 Identities=7% Similarity=0.144 Sum_probs=6.3
Q ss_pred CHHHHHHHHHHHHHC
Q ss_conf 999999999999988
Q 001632 941 LMAEATRVYNESLAA 955 (1041)
Q Consensus 941 ~~~~A~~~~~~~~~~ 955 (1041)
+.++|.+++++..+.
T Consensus 110 d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 110 NEKQAVKTFEKACRL 124 (133)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC
T ss_conf 899999999999987
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.73 E-value=0.28 Score=20.09 Aligned_cols=28 Identities=11% Similarity=0.150 Sum_probs=10.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCH
Q ss_conf 9999981488589999999998316883
Q 001632 967 MLKGYMDHGYIEEGINLFEEVRESSESD 994 (1041)
Q Consensus 967 l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 994 (1041)
+.-+|.+.|++++|..+++++.+..|.+
T Consensus 79 Lav~yyklgdy~~A~~~~~~~L~ieP~n 106 (124)
T d2pqrb1 79 LTIGCYKLGEYSMAKRYVDTLFEHERNN 106 (124)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999998732999999999998239984
|