Citrus Sinensis ID: 001639

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------104

MPRRRDDDDDEMDAEEDEYDEQVMDDEIDEEEEEEDDRSSRKRRRSQFIDDVAEEDDEEEEEDYDDDEDYGGGGGAARKPKAKRRSGSEFFDLEAQVDSDEEEDEEEGEDDFIVDGGAELPDEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSSHTEYDEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIPQSPGRYSRGGPPAGGRNRGGRGGHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNVVVSTPYRDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDAMSPVIGADNEGPWFMPDILVRRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQP

ccccccccccccccccccccccccccccccHHHHcccccHHHHHcccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHccccccccccEEEEEccccHHHHHHHHHHHHHHHHccccccEEEEEEcccccEEEEEEccHHHHHHHHHHcccEEccEEEEEcHHHHHccccccccccccccccEEEEEccccccccEEEEEEEccccEEEEEEEEcccHHHHHHHccccccccccccccccccccHHHHHHccccEEEccccccccEEEEEccEEEEccEEEEEEEcccEEEccccccHHHHHHcccccccccccHHHHHHHHHcccccccccccEEEEEcccccccEEEEEEEEccEEEEEEcccccccEEEEcccccEEEcccccEEEEEEccccccEEEEEEEEccEEEEEEcccccEEEEEcccccccccccccccccccEEEEEEEEEccccEEEEEEEccccEEEEccccccccEEEEcHHHHHHccccccccccccccEEEcccEEEEEcccccccEEEEEEEEccEEEEEEccEEcccEEEEEEcccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccEEEEEcccEEEEEEccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccEEEEEEEccccEEEEEEcccccccEEEcccccEEEccccccccEEEEcccccccEEEEEEEEcccEEEEEcccccEEEEcHHHHHccccc

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccHHHHcccccccEEEEccccccHHHHHcccHHHHccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccHHHcccHcccccHHHcccccccccEEEEEEcccHHHHHHHHHHHHHHHcccccEEEEEEEcccccEEEEEEcccHHHHHHHHHcccHHHcccEEEEEHHHcHHHEEEEccccccccccEEEEEccccccccEEEEEEcccccEEEEEEEEEcccccccccccccccccccccccccccccHHHHHHccccEEEccccccccEEEEEcccEEEccEEEEEEEEEEEEEccccccHHHHHHHccccccccccHHHHHHHHccccccccccccEEEEEEccEccEEEEEEEEcccEEEEEccccccccccEccHHHHHHHcccccEEEEEEcccccccEEEEEEcccEEEEEEcccccEEEEcHHHHHHHHHccccccccccEEEccEEEEccccEEEEEEEccccEEEEEEEcccccEEEEEHHHHHccccccEEEEcccccEEEEccEEEEEccccccccEEEEEEEEEEEEEEEccEEccccEEEEEccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEEccccEEEEEEEcccEEEEEcHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEEEccccEEEEEEccccccEEEEccccccEEcccccccEEEEEEccccccEEEEEEEccccEEEEEcccccEEEEEHHHHHHHccc

mprrrdddddemdaeedeydeqvmddeideeeeeeddrssRKRRRSQFiddvaeeddeeeeedydddedygggggaarkpkakrrsgseffdleaqvdsdeeedeeegeddfivdggaelpdedggrgihrrpllpredeqEDVEALERRIQARYARsshteydeettDVEQqallpsvrdpklwMVKCAIGREREAAVCLMQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIgnykgdlakvvdvdnvrqrvtvkliprIDLQALANKLegrevakkkpfvppprfmnvdEARELHIRVerrrdpmtgdyfeniggmlfkdgfLYKTVSMKSisaqniqptFDELekfrtpgengesdIASLSTLFANrkkghfmkgDAVIVIKGDLKNLKGWVEKVdeenvhirpemkglpkTLAVNSKElckyfepgnhvkvvsgtqagaTGMVLKVEQHVLIILSDTTKEDIRVFADdvvessevttgitkigdyelrdlvlldnnsfGVIIRVESEAFQvlkgvpdrpeVALVKLREIKCKLekksnvqdrnkntvaVKDVVRIvegpckgkqgpvehiYRGILFihdrhhlehagficakssscvvvggsrangdrngdaysrfnslrtppripqspgrysrggppaggrnrggrgghdalvgTTVKvrlgpykgyrgrvvdvkgQSVRVELESQMKVVTVDrsmisdnvvvstpyrdtprygmgsetpmhpsrtplhpymtpmrdagatpihdgmrtpmrdrawnpytpmspprdnwedgnpgswgtspqyqpgsppsrayeaptpgsgwastpggnysdagtprdssstyvnapspylpstpggqpmtpnsasylpgtpggqpmtpgtggldamspvigadnegpwfmpdilvrrsgeeSVVGVIREvlpdgscrvvlgssgngdtitalpneieivpprktdkikimggphrgatgkligvdgtdgivKVDVSLDVKILDMAILAKLAQP

mprrrdddddemdaeedeydeqvmddeideeeeeeddrssrkrrrsqfiddvaeeddeeeeedydddedygggggaarkpkakrrsgseffdleaqvdsdeeedeeegeddfivdggaelpdedggrgihrrpllpredeqedVEALERRIQARyarsshteydeettdveqqallpsvrdpklWMVKCAIGREREAAVCLMQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVEskaidlsrdtwVRMKIGnykgdlakvvdvdnvrqrvtvklipridlqalanklegrevakkkpfvppprfmnvdearelhirverrrdpmtgdYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVdeenvhirpemkglpkTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIIlsdttkedIRVFAddvvessevttgitkigdyelrdLVLLDNNSFGVIIRVESeafqvlkgvpdrpevALVKLREikcklekksnvqdrnkntvavkdvvrivegpckgkqgpvEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSrangdrngdaysrfnslrtppripqspgrysrggppaggrnrggrgghdalvgttvkvrlgpykgyrgrvvdvkgqsvrvelesqmkvvtvdrsmisdnvvvstpyrdtprygmgsetpmhpsrTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDAMSPVIGADNEGPWFMPDILVRRSGEESVVGVIRevlpdgscrvvlgssgngdtitalpneieivpprktdkikimggphrgatgkligvdgtdGIVKVDVSLDVKILDMAILAKLAQP

MPRRRdddddemdaeedeydeQVMddeideeeeeeddrssrkrrrsQFIDDVAeeddeeeeedydddedygggggAARKPKAKRRSGSEFFDLEAQVdsdeeedeeegeddFIVDGGAELPDEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSSHTEYDEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIPQSPGRYSrggppaggrnrggrggHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNVVVSTPYRDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLpgtpggqpmtpgtggLDAMSPVIGADNEGPWFMPDILVRRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQP

*******************************************************************************************************************************************************************************LPSVRDPKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEG*****************V**ARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISA**************************LSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEK*******NKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGG**************************************************ALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNVVVS*********************************************************************************************************************************************************************VIGADNEGPWFMPDILVRRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAK****

*******************************************************************************************DLEAQVDSDEEEDEEEGEDDFIVD***************************************************************VRDPKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDL***********************FMNVDEARELH**V***RDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGE*********************DAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFAD******************ELRDLVLLDNNSFGVIIRVESEAFQVLK******************************KNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVV************************************************************KVRLGPYKGYRGRVVDVKGQSVRVELESQM*V**V****************************************************************************************************************************************************************************************************************VLPDGSCRVVL*SSG*****TALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQ*

**********************VMDD********************QFIDD************************************SEFFDLE****************DFIVDGGAELPDEDGGRGIHRRPLLPREDEQEDVEALERRIQARYA**************EQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIP*********************GGHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNVVVSTPYRDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWG***********************WASTPGGNYS************VNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDAMSPVIGADNEGPWFMPDILVRRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQP

****************************************************************************************E******QVDS**************VD***********RGIHRRPLLPREDEQEDVEALERRIQARYARSS*****E*TTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQAL**************FVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGS************************************************DALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMIS**************************************************TP***R*WNP*****************SWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDAMSPVIGADNEGPWFMPDILVRRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQP

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MPRRRDDDDDEMDAEEDEYDEQVMDDEIDEEEEEEDDRSSRKRRRSQFIDDVAEEDDEEEEEDYDDDEDYGGGGGAARKPKAKRRSGSEFFDLEAQVDSDEEEDEEEGEDDFIVDGGAELPDEDGGRGIHRRPLLPxxxxxxxxxxxxxxxxxxxxxSSHTEYDEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIPQSPGRYSRGGPPAGGRNRGGRGGHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNVVVSTPYRDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDAMSPVIGADNEGPWFMPDILVRRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQP

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1039	2.2.26 [Sep-21-2011]
Q9STN3		1041	Putative transcription el	yes	no	0.989	0.987	0.756	0.0
O80770		989	Putative transcription el	no	no	0.838	0.880	0.654	0.0
Q5ZI08		1079	Transcription elongation	yes	no	0.871	0.839	0.346	1e-132
O55201		1082	Transcription elongation	yes	no	0.873	0.839	0.333	1e-131
O00267		1087	Transcription elongation	yes	no	0.864	0.826	0.331	1e-131
Q5R405		1083	Transcription elongation	yes	no	0.831	0.797	0.337	1e-129
Q9DDT5		1084	Transcription elongation	yes	no	0.834	0.799	0.339	1e-128
Q9V460		1078	Transcription elongation	yes	no	0.830	0.800	0.317	1e-106
Q21338		1208	Transcription elongation	yes	no	0.685	0.589	0.318	2e-87
Q4PIC4		1057	Transcription elongation	N/A	no	0.570	0.561	0.315	2e-80

>sp\|Q9STN3\|SPT51_ARATH Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=2	Back alignment and function desciption

 Score = 1501 bits (3885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 796/1052 (75%), Positives = 895/1052 (85%), Gaps = 24/1052 (2%)

Query: 1    MPRRRDDDDDEMDAEEDEYD---EQVMDDEIDEEEEEEDDRSSRKRRRSQFIDDVAEEDD 57
            MPR RD+DD E+D + +  D   E+  D+E +EE       S RKR RS FIDD AEED 
Sbjct: 1    MPRSRDEDD-ELDGDYEALDLEEEEEEDEEEEEERGRGGGGSRRKRGRSNFIDDYAEEDS 59

Query: 58   EEEEEDYDDDEDYGGGGGAARKPKAKRRSGSEFFDLEA-QVDSDEEEDEEEGEDDFIVDG 116
            +EE++D +D     GG GAA K   K+ S S F D EA QVD ++EE+E+E EDDFIVD 
Sbjct: 60   QEEDDDDEDYGSSRGGKGAASK--RKKPSASIFLDREAHQVDDEDEEEEDEAEDDFIVDN 117

Query: 117  GAELPDEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSSHTEYDEETTDVEQQALL 176
            G +LPDE G R   RR  LPR++  EDVE LERRIQ R++   H EYDEE T+VEQQALL
Sbjct: 118  GTDLPDERGDRRYERR-FLPRDENDEDVEDLERRIQERFSSRHHEEYDEEATEVEQQALL 176

Query: 177  PSVRDPKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSVIALDHLKNYIYIEADKEAH 236
            PSVRDPKLWMVKCAIGRERE AVCLMQK ID+G++LQIRSV+ALDHLKN+IY+EADKEAH
Sbjct: 177  PSVRDPKLWMVKCAIGREREVAVCLMQKFIDRGADLQIRSVVALDHLKNFIYVEADKEAH 236

Query: 237  VKEACKGLRNIYS-QKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVD 295
            VKEA KG+RNIY+ QK++LVPIREMTDVL+VESKAIDLSRDTWVRMKIG YKGDLAKVVD
Sbjct: 237  VKEAIKGMRNIYANQKILLVPIREMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVD 296

Query: 296  VDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRD 355
            VDNVRQRVTVKLIPRIDLQALA+KL+GREV+KKK FVPPPRFMN+DEARELHIRVERRRD
Sbjct: 297  VDNVRQRVTVKLIPRIDLQALASKLDGREVSKKKAFVPPPRFMNIDEARELHIRVERRRD 356

Query: 356  PMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLST 415
             MTGDYFENIGGMLFKDGF YK VS+KSI+ QN+ PTFDELEKF  P ENGE D   LST
Sbjct: 357  HMTGDYFENIGGMLFKDGFHYKQVSLKSITVQNVTPTFDELEKFNKPSENGEGDFGGLST 416

Query: 416  LFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCK 475
            LFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENV IR E+KGLP  LAVN +ELCK
Sbjct: 417  LFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVLIRSEVKGLPDPLAVNERELCK 476

Query: 476  YFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITK 535
            YFEPGNHVKVVSGT  GATGMV+KV+QHVLIILSDTTKE +RVFAD VVESSEVTTG+TK
Sbjct: 477  YFEPGNHVKVVSGTHEGATGMVVKVDQHVLIILSDTTKEHVRVFADHVVESSEVTTGVTK 536

Query: 536  IGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQD 595
            IGDYEL DLVLLDN SFGVIIR+E+EAFQVLKGVPDRPEVALVKLREIKCKLEKK NVQD
Sbjct: 537  IGDYELHDLVLLDNLSFGVIIRLENEAFQVLKGVPDRPEVALVKLREIKCKLEKKINVQD 596

Query: 596  RNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGG 655
            R KN +AVKD VR++EGP KGKQGPV+HIY+G+LFI+DRHHLEHAGFICAK +SC+VVGG
Sbjct: 597  RYKNVIAVKDDVRVIEGPSKGKQGPVKHIYKGVLFIYDRHHLEHAGFICAKCTSCIVVGG 656

Query: 656  SRANGDRN-GDAYSRFNSLRTPPRIPQSPGRYSRGGPPAGGRNRGGRGGH-----DALVG 709
            SR+  +RN GD+ SR+ + + P  +P SPGR+ RG       + G  GG      D+L+G
Sbjct: 657  SRSGANRNGGDSLSRYGNFKAPAPVPSSPGRFQRGRGGGYNNSGGRHGGGRGRGDDSLLG 716

Query: 710  TTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNVVVSTPYRDTPRYG 769
            TTVK+RLGP+KGYRG VV+VKG SVRVELE  MK+VTVDR  ISDN V +TP+RDT RY 
Sbjct: 717  TTVKIRLGPFKGYRGPVVEVKGNSVRVELE--MKIVTVDRGAISDN-VATTPFRDTSRYS 773

Query: 770  MGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNP 829
            MGSETPMHPSRTPLHPYMTPMRD+GATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNP
Sbjct: 774  MGSETPMHPSRTPLHPYMTPMRDSGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNP 833

Query: 830  GSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPST 889
            GSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGG+YSDAGTPRD  S Y NAPSPYLPST
Sbjct: 834  GSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGSYSDAGTPRDHGSAYANAPSPYLPST 893

Query: 890  PGGQPMTPNSASYLPGTPGGQPMTPGTGGLDAMSPVIGADNEGPWFMPDILV--RRSGEE 947
            P GQPMTP+SASYLPGTPGGQPMTPGT GLD MSPVIG D E  WFMPDILV   ++GE+
Sbjct: 894  P-GQPMTPSSASYLPGTPGGQPMTPGT-GLDVMSPVIGGDAEA-WFMPDILVDIHKAGED 950

Query: 948  SVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKL 1007
            + VGVIR+V  DG+C+V LGSSG GDTI ALP+E+EI+PPRK+D++KI+GG +RG+TGKL
Sbjct: 951  TDVGVIRDV-SDGTCKVSLGSSGEGDTIMALPSELEIIPPRKSDRVKIVGGQYRGSTGKL 1009

Query: 1008 IGVDGTDGIVKVDVSLDVKILDMAILAKLAQP 1039
            IG+DG+DGIVK+D +LDVKILD+A+LAK  QP
Sbjct: 1010 IGIDGSDGIVKIDDNLDVKILDLALLAKFVQP 1041

May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex.
Arabidopsis thaliana (taxid: 3702)

>sp\|O80770\|SPT52_ARATH Putative transcription elongation factor SPT5 homolog 2 OS=Arabidopsis thaliana GN=At2g34210 PE=2 SV=2	Back alignment and function description

>sp\|Q5ZI08\|SPT5H_CHICK Transcription elongation factor SPT5 OS=Gallus gallus GN=SUPT5H PE=2 SV=1	Back alignment and function description

>sp\|O55201\|SPT5H_MOUSE Transcription elongation factor SPT5 OS=Mus musculus GN=Supt5h PE=1 SV=1	Back alignment and function description

>sp\|O00267\|SPT5H_HUMAN Transcription elongation factor SPT5 OS=Homo sapiens GN=SUPT5H PE=1 SV=1	Back alignment and function description

>sp\|Q5R405\|SPT5H_PONAB Transcription elongation factor SPT5 OS=Pongo abelii GN=SUPT5H PE=2 SV=1	Back alignment and function description

>sp\|Q9DDT5\|SPT5H_DANRE Transcription elongation factor SPT5 OS=Danio rerio GN=supt5h PE=1 SV=1	Back alignment and function description

>sp\|Q9V460\|SPT5H_DROME Transcription elongation factor SPT5 OS=Drosophila melanogaster GN=Spt5 PE=1 SV=1	Back alignment and function description

>sp\|Q21338\|SPT5H_CAEEL Transcription elongation factor SPT5 OS=Caenorhabditis elegans GN=spt-5 PE=3 SV=3	Back alignment and function description

>sp\|Q4PIC4\|SPT5_USTMA Transcription elongation factor SPT5 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SPT5 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1039
255570428		1045	suppressor of ty, putative [Ricinus comm	0.962	0.956	0.864	0.0
449462178		1044	PREDICTED: putative transcription elonga	0.918	0.913	0.845	0.0
224105299		1042	global transcription factor group [Popul	0.947	0.944	0.833	0.0
359492305		1034	PREDICTED: putative transcription elonga	0.957	0.962	0.830	0.0
359492307		1044	PREDICTED: putative transcription elonga	0.957	0.953	0.821	0.0
356515975		1039	PREDICTED: putative transcription elonga	0.916	0.916	0.836	0.0
356509328		1050	PREDICTED: putative transcription elonga	0.916	0.906	0.835	0.0
147838939		1107	hypothetical protein VITISV_043874 [Viti	0.937	0.879	0.803	0.0
357463691		1040	Global transcription factor group [Medic	0.923	0.922	0.816	0.0
334186403		1041	global transcription factor group A2 [Ar	0.989	0.987	0.756	0.0

>gi\|255570428\|ref\|XP_002526173.1\| suppressor of ty, putative [Ricinus communis] gi\|223534550\|gb\|EEF36249.1\| suppressor of ty, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1697 bits (4394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 871/1008 (86%), Positives = 946/1008 (93%), Gaps = 8/1008 (0%)

Query: 39   SSRKRRRSQFIDDVAEEDDEEEEEDYDDDEDYGGGGGAARKPKAKRRSGSEFFDLEAQVD 98
            S+RKRRRS FIDDVAEEDDEEEEE+YD+D+D  GGGGA ++ KAK  SG +FFDLEA+VD
Sbjct: 39   SNRKRRRSDFIDDVAEEDDEEEEEEYDEDDDDYGGGGAGKRQKAKASSGKQFFDLEAEVD 98

Query: 99   SDEEEDEEEGEDD-FIVDGGAELPDEDGGRGIHRRPLLPREDEQEDVEALERRIQARYAR 157
            SDEEE+E++  +D FIVD GA+LPDED GR +HRRPLLPRED+QED+EALERRIQARYAR
Sbjct: 99   SDEEEEEDDDAEDDFIVDNGADLPDEDDGRRVHRRPLLPREDDQEDMEALERRIQARYAR 158

Query: 158  SSHTEYDEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSV 217
            SSHTEYDEETT+VEQQALLPSVRDPKLWMVKCAIGRERE AVCLMQK IDKGSELQIRS 
Sbjct: 159  SSHTEYDEETTEVEQQALLPSVRDPKLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSA 218

Query: 218  IALDHLKNYIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDT 277
            IALDHLKNYIYIEADKEAHV+EACKGLRNIY+QK+MLVPI+EMTDVL+VESKAIDLSRDT
Sbjct: 219  IALDHLKNYIYIEADKEAHVREACKGLRNIYAQKIMLVPIKEMTDVLSVESKAIDLSRDT 278

Query: 278  WVRMKIGNYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKPFVPPPRF 337
            WVRMKIG YKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKK FVPPPRF
Sbjct: 279  WVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKAFVPPPRF 338

Query: 338  MNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELE 397
            MNVDEARELHIRVERRRDPM+GDYFENIGGMLFKDGFLYKTVSMKSIS QNI+PTFDELE
Sbjct: 339  MNVDEARELHIRVERRRDPMSGDYFENIGGMLFKDGFLYKTVSMKSISVQNIKPTFDELE 398

Query: 398  KFRTPGENGESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRP 457
            KFR PGEN + DI  LSTLFANRKKGHF+KGDAVI++KGDLKNLKGWVEKVDEENVHI+P
Sbjct: 399  KFRKPGEN-DGDIVGLSTLFANRKKGHFVKGDAVIIVKGDLKNLKGWVEKVDEENVHIKP 457

Query: 458  EMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIR 517
            EMK LP+T+AVN KELCKYFEPGNHVKVVSGTQ GATGMV+KVEQHVLIILSDTTKE IR
Sbjct: 458  EMKDLPRTIAVNEKELCKYFEPGNHVKVVSGTQEGATGMVVKVEQHVLIILSDTTKEHIR 517

Query: 518  VFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVAL 577
            VFADDVVESSEVTTG+TKIGDYEL DLVLLDN SFGVIIRVESEAFQVLKGVP+RPEVAL
Sbjct: 518  VFADDVVESSEVTTGVTKIGDYELHDLVLLDNMSFGVIIRVESEAFQVLKGVPERPEVAL 577

Query: 578  VKLREIKCKLEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHL 637
            V+LREIKCK+EKK NVQDR KNT+AVKDVVRI++GPCKGKQGPVEHIY+G+LFI+DRHHL
Sbjct: 578  VRLREIKCKIEKKFNVQDRYKNTIAVKDVVRIIDGPCKGKQGPVEHIYKGVLFIYDRHHL 637

Query: 638  EHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIPQSPGRYSRGGPP--AGG 695
            EHAGFICAKS SC+VVGG+RANGDRNGD+YSRF+S +TPPR+PQSP R+ RGGPP  +GG
Sbjct: 638  EHAGFICAKSHSCIVVGGTRANGDRNGDSYSRFSSFKTPPRVPQSPRRFPRGGPPFESGG 697

Query: 696  RNRGGRGGHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVT--VDRSMIS 753
            RNRGGRGGHDALVGTTVK+RLGP+KGYRGRVV++KG SVRVELESQMKV+    DR+ IS
Sbjct: 698  RNRGGRGGHDALVGTTVKIRLGPFKGYRGRVVEIKGPSVRVELESQMKVILGKFDRNNIS 757

Query: 754  DNVVVSTPYRDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNP 813
            DNVV+STP+RD+ RYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNP
Sbjct: 758  DNVVISTPHRDSSRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNP 817

Query: 814  YTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRD 873
            Y PMSPPRDNWEDGNP SWGTSP YQPGSPPSRAYEAPTPGSGWA+TPGG+YSDAGTPRD
Sbjct: 818  YAPMSPPRDNWEDGNPASWGTSPHYQPGSPPSRAYEAPTPGSGWANTPGGSYSDAGTPRD 877

Query: 874  SSSTYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDAMSPVIGADNEGP 933
            SSS Y NAPSPYLPSTPGGQPMTP+SA+YLPGTPGGQPMTPGTGGLD MSPVIG DNEGP
Sbjct: 878  SSSAYANAPSPYLPSTPGGQPMTPSSAAYLPGTPGGQPMTPGTGGLDVMSPVIGGDNEGP 937

Query: 934  WFMPDIL--VRRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTD 991
            W+MPDIL  VR++ ++S +GVIR+VL DGSCRVVLG++GNG+TITALPNEIEIV PRK+D
Sbjct: 938  WYMPDILVNVRKAADDSAIGVIRDVLADGSCRVVLGANGNGETITALPNEIEIVVPRKSD 997

Query: 992  KIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQP 1039
            KIKIMGG HRGATGKLIGVDGTDGIVKVD +LDVKILDM ILAKLAQP
Sbjct: 998  KIKIMGGAHRGATGKLIGVDGTDGIVKVDDTLDVKILDMVILAKLAQP 1045

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449462178\|ref\|XP_004148818.1\| PREDICTED: putative transcription elongation factor SPT5 homolog 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224105299\|ref\|XP_002313759.1\| global transcription factor group [Populus trichocarpa] gi\|222850167\|gb\|EEE87714.1\| global transcription factor group [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359492305\|ref\|XP_002265283.2\| PREDICTED: putative transcription elongation factor SPT5 homolog 1-like isoform 1 [Vitis vinifera] gi\|302142757\|emb\|CBI19960.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359492307\|ref\|XP_003634397.1\| PREDICTED: putative transcription elongation factor SPT5 homolog 1-like isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356515975\|ref\|XP_003526672.1\| PREDICTED: putative transcription elongation factor SPT5 homolog 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356509328\|ref\|XP_003523402.1\| PREDICTED: putative transcription elongation factor SPT5 homolog 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|147838939\|emb\|CAN68098.1\| hypothetical protein VITISV_043874 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357463691\|ref\|XP_003602127.1\| Global transcription factor group [Medicago truncatula] gi\|355491175\|gb\|AES72378.1\| Global transcription factor group [Medicago truncatula]	Back alignment and taxonomy information

>gi\|334186403\|ref\|NP_192575.3\| global transcription factor group A2 [Arabidopsis thaliana] gi\|374095445\|sp\|Q9STN3.2\|SPT51_ARATH RecName: Full=Putative transcription elongation factor SPT5 homolog 1 gi\|332657229\|gb\|AEE82629.1\| global transcription factor group A2 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1039
TAIR\|locus:2040954		989	AT2G34210 [Arabidopsis thalian	0.717	0.754	0.664	2.6e-276
UNIPROTKB\|Q5ZI08		1079	SUPT5H "Transcription elongati	0.729	0.702	0.353	1.8e-116
MGI\|MGI:1202400		1082	Supt5 "suppressor of Ty 5" [Mu	0.728	0.699	0.349	5.4e-115
UNIPROTKB\|E9PTB2		1083	E9PTB2 "Uncharacterized protei	0.728	0.698	0.349	6.9e-115
UNIPROTKB\|Q5R405		1083	SUPT5H "Transcription elongati	0.725	0.696	0.346	3.4e-111
UNIPROTKB\|O00267		1087	SUPT5H "Transcription elongati	0.726	0.694	0.344	4.3e-111
UNIPROTKB\|I3LA48		1083	SUPT5H "Uncharacterized protei	0.726	0.697	0.344	5.5e-111
UNIPROTKB\|I3LMJ9		1088	SUPT5H "Uncharacterized protei	0.726	0.693	0.344	5.5e-111
UNIPROTKB\|E2RLS8		1087	SUPT5H "Uncharacterized protei	0.726	0.694	0.344	9e-111
ZFIN\|ZDB-GENE-001207-1		1084	supt5h "suppressor of Ty 5 hom	0.723	0.693	0.350	3.8e-110

TAIR\|locus:2040954 AT2G34210 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2656 (940.0 bits), Expect = 2.6e-276, P = 2.6e-276
 Identities = 539/811 (66%), Positives = 622/811 (76%)

Query:   112 FIVDGGAELPDEDGGRGIHRRPLLPR--EDEQEDVEALERRIQARYA-RSSHTEYD-EET 167
             FIV G A+LP+ED     HRR    R     +EDV+ LE+R   R + + +  +Y+ ++ 
Sbjct:    98 FIVSGEADLPNEDSD---HRRQYYQRGFHPHEEDVDELEKRTLERLSTKYAKDDYELDDV 154

Query:   168 TDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSVIALDHLKNYI 227
              DV+QQALLPSVRDPKLW+VKCAIGRERE AVCLMQK +D+GSE +IRS IALDHL+NY+
Sbjct:   155 NDVDQQALLPSVRDPKLWLVKCAIGREREVAVCLMQKIVDRGSEFKIRSAIALDHLQNYV 214

Query:   228 YIEADKEAHVKEACKGLRNIYS-QKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNY 286
             YIEAD EAHVKEA KG+RNIY+ QK++LVPI+EMT VL+VESKAIDLSRD+WVRMK+G Y
Sbjct:   215 YIEADMEAHVKEAIKGMRNIYANQKILLVPIKEMTAVLSVESKAIDLSRDSWVRMKLGIY 274

Query:   287 KGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKPFVPPPRFMNVDEAREL 346
             KGDLA+VVDVDNVR+RVTVKLIPRIDLQALANKLEG E  KKK F PPPRFMN+DEAREL
Sbjct:   275 KGDLAQVVDVDNVRKRVTVKLIPRIDLQALANKLEGTENVKKKAFAPPPRFMNIDEAREL 334

Query:   347 HIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENG 406
             HIRVE RRDPMTGDYFENIGGMLFKDGFLYK VS KSI+AQN+ PTFDELE+F+ P ENG
Sbjct:   335 HIRVEHRRDPMTGDYFENIGGMLFKDGFLYKKVSTKSIAAQNVTPTFDELERFKRPNENG 394

Query:   407 ESDIASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTL 466
             E D    STLFANRKKGHFMKGDAVIVIKGDLKNLKGW+EKVDEENV IR EMK LP  +
Sbjct:   395 EIDFVDESTLFANRKKGHFMKGDAVIVIKGDLKNLKGWIEKVDEENVLIRSEMKDLPNPI 454

Query:   467 AVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVES 526
             AVN +ELCKYFEPGN VKVVSG   G TGM++KV+QH+LIILSDTTKE I VFAD V +S
Sbjct:   455 AVNGRELCKYFEPGNFVKVVSGIHEGGTGMIVKVDQHMLIILSDTTKEHICVFADHVAKS 514

Query:   527 SEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCK 586
             +EVT G+TKIGDYEL DLV+L + SFGVI++++SEA Q+LKGVPD  EV++VK  EIK K
Sbjct:   515 AEVTKGVTKIGDYELHDLVILSDFSFGVILKLDSEAIQILKGVPDSSEVSIVKASEIKYK 574

Query:   587 LEKKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAK 646
             + KK NVQDR KN VAVKDVVR++EGP KGKQGPV  IY+G+LFIHDRH+LEH GFIC +
Sbjct:   575 IWKKINVQDRYKNVVAVKDVVRVIEGPSKGKQGPVVQIYKGVLFIHDRHNLEHTGFICTR 634

Query:   647 SSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIPQSPGRYSXXX------XXXXXXXXXX 700
              SSCV+ GG+                 +TP  +P SP R+                    
Sbjct:   635 CSSCVLAGGN----------------FKTPALVPPSPRRFQRADMGYNPGAGGRHQGGRG 678

Query:   701 XXXHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISD---NVV 757
                 D LVGT VK+RLGP+KGY GR+V+VK + VRVELE+  K+VTV+R  ISD   NVV
Sbjct:   679 RRGDDHLVGTYVKIRLGPFKGYSGRLVEVKDKLVRVELEA--KIVTVERKAISDMTDNVV 736

Query:   758 VSTPYRDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPM 817
                    TP+Y MGS+TPMHPSRTPLHP MTPMR +GATPIHDGMRTPMR RAWNPY PM
Sbjct:   737 A------TPQYNMGSQTPMHPSRTPLHPCMTPMRHSGATPIHDGMRTPMRGRAWNPYMPM 790

Query:   818 SPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTPGSGW-ASTPG-GNYSDAGTPRDSS 875
             SPPRDNWEDGNPGSWGTSP           YEA TPGS W +STPG  +Y DAGTP +++
Sbjct:   791 SPPRDNWEDGNPGSWGTSP-----------YEAATPGSDWGSSTPGRSSYRDAGTPINNA 839

Query:   876 STYVNAPSP-------YLPSTPGGQPMTPNS 899
                 NAPSP       YLP+TPGGQ MTP +
Sbjct:   840 ----NAPSPMTPSSTSYLPTTPGGQAMTPGT 866

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0032784 "regulation of DNA-dependent transcription, elongation" evidence=IEA

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=RCA

UNIPROTKB\|Q5ZI08 SUPT5H "Transcription elongation factor SPT5" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:1202400 Supt5 "suppressor of Ty 5" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PTB2 E9PTB2 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5R405 SUPT5H "Transcription elongation factor SPT5" [Pongo abelii (taxid:9601)]	Back alignment and assigned GO terms

UNIPROTKB\|O00267 SUPT5H "Transcription elongation factor SPT5" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LA48 SUPT5H "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LMJ9 SUPT5H "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RLS8 SUPT5H "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-001207-1 supt5h "suppressor of Ty 5 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O55201	SPT5H_MOUSE	No assigned EC number	0.3333	0.8739	0.8391	yes	no
Q6CC84	SPT5_YARLI	No assigned EC number	0.3034	0.8046	0.8530	yes	no
Q5ZI08	SPT5H_CHICK	No assigned EC number	0.3461	0.8719	0.8396	yes	no
O00267	SPT5H_HUMAN	No assigned EC number	0.3310	0.8642	0.8261	yes	no
Q9V460	SPT5H_DROME	No assigned EC number	0.3177	0.8306	0.8005	yes	no
Q9STN3	SPT51_ARATH	No assigned EC number	0.7566	0.9894	0.9875	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00014304001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (899 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00002607001	SubName- Full=Chromosome undetermined scaffold_133, whole genome shotgun sequence; (114 aa)	•	•	•	0.829
	GSVIVG00032396001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (657 aa)	•		•	0.446

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1039
COG5164		607	COG5164, SPT5, Transcription elongation factor [Tr	5e-40
cd09888		86	cd09888, NGN_Euk, Eukaryotic N-Utilization Substan	3e-39
pfam03439		84	pfam03439, Spt5-NGN, Early transcription elongatio	2e-28
cd06086		58	cd06086, KOW_Spt5_6, KOW domain of Spt5, repeat 6	2e-20
cd06085		52	cd06085, KOW_Spt5_5, KOW domain of Spt5, repeat 5	2e-19
cd06083		51	cd06083, KOW_Spt5_3, KOW domain of Spt5, repeat 3	2e-18
cd06084		43	cd06084, KOW_Spt5_4, KOW domain of Spt5, repeat 4	1e-16
cd06081		38	cd06081, KOW_Spt5_1, KOW domain of Spt5, repeat 1	1e-15
cd06082		51	cd06082, KOW_Spt5_2, KOW domain of Spt5, repeat 2	1e-14
smart01104		121	smart01104, CTD, Spt5 C-terminal nonapeptide repea	2e-11
smart00738		106	smart00738, NGN, In Spt5p, this domain may confer	9e-11
pfam11942		92	pfam11942, Spt5_N, Spt5 transcription elongation f	8e-10
PRK08559		153	PRK08559, nusG, transcription antitermination prot	5e-09
TIGR00405		145	TIGR00405, L26e_arch, ribosomal protein L24p/L26e,	7e-07
pfam04147		809	pfam04147, Nop14, Nop14-like family	1e-06
pfam04931		784	pfam04931, DNA_pol_phi, DNA polymerase phi	5e-06
pfam04006		613	pfam04006, Mpp10, Mpp10 protein	6e-06
pfam04147		809	pfam04147, Nop14, Nop14-like family	1e-05
cd09887		82	cd09887, NGN_Arch, Archaeal N-Utilization Substanc	1e-05
pfam05285		317	pfam05285, SDA1, SDA1	1e-05
COG3343		175	COG3343, RpoE, DNA-directed RNA polymerase, delta	1e-05
pfam05793		528	pfam05793, TFIIF_alpha, Transcription initiation f	1e-05
pfam11942		92	pfam11942, Spt5_N, Spt5 transcription elongation f	4e-05
COG5271		4600	COG5271, MDN1, AAA ATPase containing von Willebran	8e-05
pfam03344		715	pfam03344, Daxx, Daxx Family	9e-05
pfam04147		809	pfam04147, Nop14, Nop14-like family	1e-04
pfam04931		784	pfam04931, DNA_pol_phi, DNA polymerase phi	1e-04
COG5271		4600	COG5271, MDN1, AAA ATPase containing von Willebran	1e-04
pfam07093		557	pfam07093, SGT1, SGT1 protein	1e-04
pfam02724		583	pfam02724, CDC45, CDC45-like protein	2e-04
pfam05793		528	pfam05793, TFIIF_alpha, Transcription initiation f	4e-04
COG5271		4600	COG5271, MDN1, AAA ATPase containing von Willebran	5e-04
COG4547		620	COG4547, CobT, Cobalamin biosynthesis protein CobT	5e-04
TIGR00927		1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	7e-04
PRK05901		509	PRK05901, PRK05901, RNA polymerase sigma factor; P	7e-04
COG5137		279	COG5137, COG5137, Histone chaperone involved in ge	8e-04
COG3343		175	COG3343, RpoE, DNA-directed RNA polymerase, delta	0.001
COG5271		4600	COG5271, MDN1, AAA ATPase containing von Willebran	0.001
pfam02724		583	pfam02724, CDC45, CDC45-like protein	0.001
pfam03153		332	pfam03153, TFIIA, Transcription factor IIA, alpha/	0.001
COG5271		4600	COG5271, MDN1, AAA ATPase containing von Willebran	0.002
PHA03169		413	PHA03169, PHA03169, hypothetical protein; Provisio	0.002
pfam03343		603	pfam03343, SART-1, SART-1 family	0.002
pfam03985		431	pfam03985, Paf1, Paf1	0.002
pfam11705		221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	0.003
pfam00467		32	pfam00467, KOW, KOW motif	0.003
COG5406		1001	COG5406, COG5406, Nucleosome binding factor SPN, S	0.003
pfam05793		528	pfam05793, TFIIF_alpha, Transcription initiation f	0.004
PRK02363		129	PRK02363, PRK02363, DNA-directed RNA polymerase su	0.004

>gnl\|CDD\|227493 COG5164, SPT5, Transcription elongation factor [Transcription]	Back alignment and domain information

 Score =  157 bits (397), Expect = 5e-40
 Identities = 132/632 (20%), Positives = 203/632 (32%), Gaps = 86/632 (13%)

Query: 333 PPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSISAQNIQPT 392
            PP+  N   A  L      +RD     Y        + DGFL K   +         PT
Sbjct: 6   APPQLFNPTMALRLDQANLYKRDDRHFTY----KNEDYIDGFLVKVKRISERETLMRIPT 61

Query: 393 FDELEKFRTPGENGESDIASLSTLFANRKKGH--FMKGDAVIVIKGDLKNLKGWVEKVDE 450
            DE   F       + D+ S    F   KK H  F  GDA+ V++G+ +   G V +  E
Sbjct: 62  NDEKNVFSI--ICKDLDLYSYVESF---KKQHAVFQPGDALEVLRGEQRGRVGVVPRQKE 116

Query: 451 ENVHIRPEMKGLPKTLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSD 510
               +          L      L K F  G+ VKV+ G +    G V +++   +   S+
Sbjct: 117 MIETMTYHF-EQR--LCGPWGRLRKGFYKGDLVKVIEGGEMVDIGTVPRIDGEKVTFNSE 173

Query: 511 TTKEDIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGVP 570
             K +  + +  + +S + T   +    Y+L D V L       I  ++ +  +V+    
Sbjct: 174 NFKSESTIKSRGLSKSIDTTATSS---IYKLHDYVDLFLEKVACINSIDFDVEKVID--- 227

Query: 571 DRPEVALVKLREIKCKLEKKSNVQDRNKNTVAVKDVVR-------IVEGPCKGKQGPVEH 623
                 L ++    C +     V+      + +    R       +VE      +G    
Sbjct: 228 -----ELGEVHTA-CPISIGDKVRVTRGELIGMDGNGREISIGDAVVESRGGKFEGQSLG 281

Query: 624 IYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIPQSP 683
           I +   F       E+ G       +  +V  ++   +       + N    PP      
Sbjct: 282 IVKHFDFGETVSIKENNGVFVKIEGNVCIVA-TKDFTESLKVDLDKMN----PPVT---- 332

Query: 684 GRYSRGGPPAGGRNRGGRGGHDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMK 743
                   P          G D  +G TV++R G YKG+ G V DV     RVEL S  K
Sbjct: 333 ---VNLQNPKTNELERKIVGRDPAIGKTVRIRCGEYKGHLGVVKDVDRNIARVELHSNNK 389

Query: 744 VVTVDRSMIS------DNVVVSTPYRDTPRYGMGSETPMHPSRTPLHPYMTPMRDAGATP 797
            VT+++S ++      + +                 +    S+TP   Y T    AGA  
Sbjct: 390 FVTIEKSRLAYLGREGEGITYDELVNRRGLSKPLRYSEAIGSKTP--NYATGGIAAGAAA 447

Query: 798 I---HDGMRTPMRDRAWN--PYTP-MSPPRDNWEDGNP-----------GSWGTSPQYQP 840
                 G RTP     W   P TP ++ P  +W D              G       Y+ 
Sbjct: 448 TSSGLSGYRTP----GWKDGPKTPALNDPGIDWGDEKDNWYKGSLIHALGKGLALEDYRD 503

Query: 841 GSPPSRAYEAPTPGSG-WASTPGGN-------YSDAGTPRDSSSTYVNAPSPYLPSTPGG 892
           G   +      T  S      P  N           GT    +    +     + ST G 
Sbjct: 504 GLFMTAWKGQATSASEISFVQPRWNNLVCVLDGEKKGTCGILNGINGDWGGTVIRSTKGS 563

Query: 893 Q---PMTPNSASYLPGTPGGQPMTPGTGGLDA 921
               PM  NS     G           G   A
Sbjct: 564 VVHWPMNDNSKKIYDGGASAWG-NQDDGNRSA 594

Length = 607

>gnl\|CDD\|193577 cd09888, NGN_Euk, Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1)	Back alignment and domain information

>gnl\|CDD\|217558 pfam03439, Spt5-NGN, Early transcription elongation factor of RNA pol II, NGN section	Back alignment and domain information

>gnl\|CDD\|240510 cd06086, KOW_Spt5_6, KOW domain of Spt5, repeat 6	Back alignment and domain information

>gnl\|CDD\|240509 cd06085, KOW_Spt5_5, KOW domain of Spt5, repeat 5	Back alignment and domain information

>gnl\|CDD\|240507 cd06083, KOW_Spt5_3, KOW domain of Spt5, repeat 3	Back alignment and domain information

>gnl\|CDD\|240508 cd06084, KOW_Spt5_4, KOW domain of Spt5, repeat 4	Back alignment and domain information

>gnl\|CDD\|240505 cd06081, KOW_Spt5_1, KOW domain of Spt5, repeat 1	Back alignment and domain information

>gnl\|CDD\|240506 cd06082, KOW_Spt5_2, KOW domain of Spt5, repeat 2	Back alignment and domain information

>gnl\|CDD\|215026 smart01104, CTD, Spt5 C-terminal nonapeptide repeat binding Spt4	Back alignment and domain information

>gnl\|CDD\|197850 smart00738, NGN, In Spt5p, this domain may confer affinity for Spt4p	Back alignment and domain information

>gnl\|CDD\|221333 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic N-terminal	Back alignment and domain information

>gnl\|CDD\|181467 PRK08559, nusG, transcription antitermination protein NusG; Validated	Back alignment and domain information

>gnl\|CDD\|129499 TIGR00405, L26e_arch, ribosomal protein L24p/L26e, archaeal	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|218333 pfam04931, DNA_pol_phi, DNA polymerase phi	Back alignment and domain information

>gnl\|CDD\|217840 pfam04006, Mpp10, Mpp10 protein	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|193576 cd09887, NGN_Arch, Archaeal N-Utilization Substance G (NusG) N-terminal (NGN) domain	Back alignment and domain information

>gnl\|CDD\|218538 pfam05285, SDA1, SDA1	Back alignment and domain information

>gnl\|CDD\|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit [Transcription]	Back alignment and domain information

>gnl\|CDD\|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)	Back alignment and domain information

>gnl\|CDD\|221333 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic N-terminal	Back alignment and domain information

>gnl\|CDD\|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|217503 pfam03344, Daxx, Daxx Family	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|218333 pfam04931, DNA_pol_phi, DNA polymerase phi	Back alignment and domain information

>gnl\|CDD\|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|219293 pfam07093, SGT1, SGT1 protein	Back alignment and domain information

>gnl\|CDD\|217203 pfam02724, CDC45, CDC45-like protein	Back alignment and domain information

>gnl\|CDD\|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)	Back alignment and domain information

>gnl\|CDD\|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]	Back alignment and domain information

>gnl\|CDD\|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	Back alignment and domain information

>gnl\|CDD\|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional	Back alignment and domain information

>gnl\|CDD\|227466 COG5137, COG5137, Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]	Back alignment and domain information

>gnl\|CDD\|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit [Transcription]	Back alignment and domain information

>gnl\|CDD\|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|217203 pfam02724, CDC45, CDC45-like protein	Back alignment and domain information

>gnl\|CDD\|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit	Back alignment and domain information

>gnl\|CDD\|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|223003 PHA03169, PHA03169, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|217502 pfam03343, SART-1, SART-1 family	Back alignment and domain information

>gnl\|CDD\|217829 pfam03985, Paf1, Paf1	Back alignment and domain information

>gnl\|CDD\|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31	Back alignment and domain information

>gnl\|CDD\|144165 pfam00467, KOW, KOW motif	Back alignment and domain information

>gnl\|CDD\|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]	Back alignment and domain information

>gnl\|CDD\|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)	Back alignment and domain information

>gnl\|CDD\|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta; Reviewed	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1039
KOG1999		1024	consensus RNA polymerase II transcription elongati	100.0
COG5164		607	SPT5 Transcription elongation factor [Transcriptio	100.0
KOG1999		1024	consensus RNA polymerase II transcription elongati	100.0
PRK08559		153	nusG transcription antitermination protein NusG; V	99.88
PF03439		84	Spt5-NGN: Early transcription elongation factor of	99.87
TIGR00405		145	L26e_arch ribosomal protein L24p/L26e, archaeal. T	99.74
COG5164		607	SPT5 Transcription elongation factor [Transcriptio	99.74
COG0250		178	NusG Transcription antiterminator [Transcription]	99.6
PF11942		97	Spt5_N: Spt5 transcription elongation factor, acid	99.34
PRK05609		181	nusG transcription antitermination protein NusG; V	99.3
TIGR00922		172	nusG transcription termination/antitermination fac	99.22
TIGR01956		258	NusG_myco NusG family protein. This model represen	99.21
PF12815		123	CTD: Spt5 C-terminal nonapeptide repeat binding Sp	99.01
PRK09014		162	rfaH transcriptional activator RfaH; Provisional	98.86
smart00738		106	NGN In Spt5p, this domain may confer affinity for	98.85
TIGR01955		159	RfaH transcriptional activator RfaH. This model re	98.78
KOG0260		1605	consensus RNA polymerase II, large subunit [Transc	98.49
KOG0260		1605	consensus RNA polymerase II, large subunit [Transc	98.38
PF12815		123	CTD: Spt5 C-terminal nonapeptide repeat binding Sp	98.22
KOG1832		1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.96
KOG2837		309	consensus Protein containing a U1-type Zn-finger a	97.86
PF00467		32	KOW: KOW motif; InterPro: IPR005824 Ribosomes are	97.41
PF04931		784	DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070	97.2
PF02357		92	NusG: Transcription termination factor nusG; Inter	96.79
PF10446		458	DUF2457: Protein of unknown function (DUF2457); In	96.73
PF00467		32	KOW: KOW motif; InterPro: IPR005824 Ribosomes are	96.72
KOG4315		455	consensus G-patch nucleic acid binding protein [Ge	96.67
PF04931		784	DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070	96.5
PRK12281		76	rplX 50S ribosomal protein L24; Reviewed	95.92
smart00739		28	KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif i	95.68
smart00739		28	KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif i	95.62
TIGR00405		145	L26e_arch ribosomal protein L24p/L26e, archaeal. T	94.95
CHL00141		83	rpl24 ribosomal protein L24; Validated	94.34
PRK00004		105	rplX 50S ribosomal protein L24; Reviewed	94.25
PF04147		840	Nop14: Nop14-like family ; InterPro: IPR007276 Emg	93.88
KOG0262		1640	consensus RNA polymerase I, large subunit [Transcr	93.52
CHL00141		83	rpl24 ribosomal protein L24; Validated	93.32
KOG1708		236	consensus Mitochondrial/chloroplast ribosomal prot	93.1
PF04147		840	Nop14: Nop14-like family ; InterPro: IPR007276 Emg	93.03
PRK01191		120	rpl24p 50S ribosomal protein L24P; Validated	92.91
TIGR00922		172	nusG transcription termination/antitermination fac	92.83
COG0250		178	NusG Transcription antiterminator [Transcription]	92.81
TIGR01079		104	rplX_bact ribosomal protein L24, bacterial/organel	92.74
PRK09014		162	rfaH transcriptional activator RfaH; Provisional	92.74
PRK01191		120	rpl24p 50S ribosomal protein L24P; Validated	92.45
PRK12281		76	rplX 50S ribosomal protein L24; Reviewed	92.12
PF02724		622	CDC45: CDC45-like protein; InterPro: IPR003874 CDC	92.07
PF02724		622	CDC45: CDC45-like protein; InterPro: IPR003874 CDC	91.83
PRK05609		181	nusG transcription antitermination protein NusG; V	91.82
KOG2038		988	consensus CAATT-binding transcription factor/60S r	91.36
TIGR01080		114	rplX_A_E ribosomal protein L24p/L26e, archaeal/euk	91.04
PRK08559		153	nusG transcription antitermination protein NusG; V	90.62
TIGR01955		159	RfaH transcriptional activator RfaH. This model re	90.45
PTZ00194		143	60S ribosomal protein L26; Provisional	90.05
PRK00004		105	rplX 50S ribosomal protein L24; Reviewed	90.01
PTZ00415		2849	transmission-blocking target antigen s230; Provisi	89.88
TIGR01956		258	NusG_myco NusG family protein. This model represen	89.6
COG0198		104	RplX Ribosomal protein L24 [Translation, ribosomal	89.55
TIGR01080		114	rplX_A_E ribosomal protein L24p/L26e, archaeal/euk	89.43
PTZ00194		143	60S ribosomal protein L26; Provisional	89.22
KOG0943		3015	consensus Predicted ubiquitin-protein ligase/hyper	88.95
PRK06763		213	F0F1 ATP synthase subunit alpha; Validated	87.45
COG0198		104	RplX Ribosomal protein L24 [Translation, ribosomal	87.29
KOG0943		3015	consensus Predicted ubiquitin-protein ligase/hyper	87.06
TIGR01079		104	rplX_bact ribosomal protein L24, bacterial/organel	86.68
PHA03378		991	EBNA-3B; Provisional	86.25
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	85.66
PTZ00415		2849	transmission-blocking target antigen s230; Provisi	85.24
KOG0307		1049	consensus Vesicle coat complex COPII, subunit SEC3	84.07
KOG4156		1329	consensus Claspin, protein mediating phosphorylati	83.93
PF04006		600	Mpp10: Mpp10 protein; InterPro: IPR007151 This fam	83.17
PF14632		92	SPT6_acidic: Acidic N-terminal SPT6	82.02
KOG2141		822	consensus Protein involved in high osmolarity sign	81.03
KOG2773		483	consensus Apoptosis antagonizing transcription fac	80.47

>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]	Back alignment and domain information

Probab=100.00  E-value=2.3e-216  Score=1883.62  Aligned_cols=929  Identities=50%  Similarity=0.780  Sum_probs=796.3

Q ss_pred             CCcccccCCCCCCcccccccCCcchhccc--cccCcc-----ccCCCCCCCCCCCCCccCCCCCCCCcchhhhHHHHHHH
Q 001639           78 RKPKAKRRSGSEFFDLEAQVDSDEEEDEE--EGEDDF-----IVDGGAELPDEDGGRGIHRRPLLPREDEQEDVEALERR  150 (1039)
Q Consensus        78 r~kkr~~~~~~~FiD~EAEVDDdeEeeee--e~e~df-----I~~~~~~l~~~~~~r~~~r~~~~~~~~~~~d~e~~~~~  150 (1039)
                      -++|+|+.+...||+.|||||||.||||+  |+|+|+     |++.+.+++++.-++|.||.++...   ++..|++++.
T Consensus        55 ~~~~~k~~s~~gf~~~e~dvDdeveddd~~~edEed~~~~~~ie~~e~~~~d~~~~~R~~~~~~~~~---~~~~e~~~~r  131 (1024)
T KOG1999|consen   55 PDEKDKKESGGGFIDREADVDDEVEDDDDDEEDEEDIELHNDIEESEEDLPDERGDRRLRRYWDRQL---NELEEELAKR  131 (1024)
T ss_pred             hhhhccccccccccccccccccccccccchhccCcchhhcccchhcccccccccccccchhhhhhhh---hHHHHHHHHH
Confidence            45566778889999999999998887766  334443     5544555555555555555533322   2255667777


Q ss_pred             HHHHhccCC-cc-cccccccchhhhhcCCCCCCCcEEEEEccCchHHHHHHHHHHHHHhhC---CCcceEEEEeecCCcc
Q 001639          151 IQARYARSS-HT-EYDEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCIDKG---SELQIRSVIALDHLKN  225 (1039)
Q Consensus       151 l~eRY~~~~-~~-~~~~~~~~v~q~~LlPsv~Dp~lw~Vkc~~G~Er~vv~~Lm~K~~~~~---~~l~I~Svf~~~~lkG  225 (1039)
                      +++||.... +. ..+++.++|+||+||||++||+||+|||++|+||++|+|||+||+++.   .+|+|+|||+++||||
T Consensus       132 ~aee~~~~~~~~~~~~~~~d~I~Q~~LLPsvkDP~LW~VKC~iG~Er~~a~~LMrK~i~~~~t~~plqI~Sv~a~D~lkG  211 (1024)
T KOG1999|consen  132 YAEEYIEKYGFEDGDDEDSDDIPQQALLPSVKDPNLWIVKCKIGREREVAFCLMRKFIELDKTDTPLQIKSVFAKDHLKG  211 (1024)
T ss_pred             HHHhhcccccccccchhcccchhHHhhCCCCCCCCeeEEEeccccHHHHHHHHHHHHHhhcccCCCceEEEEEeccccce
Confidence            777775332 33 233567899999999999999999999999999999999999999985   8999999999999999


Q ss_pred             EEEEEecchHHHHHHHhcCcccceeeeeeeChhhhhhccccccccccCCCCcEEEEecCCCCCCeeEEEEeeCCCCEEEE
Q 001639          226 YIYIEADKEAHVKEACKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVRQRVTV  305 (1039)
Q Consensus       226 YIYVEA~~~~~V~~ai~gl~~v~~~~~~lVpi~Em~~vL~~~k~~~~l~~G~wVRIk~G~YkGDlAqV~~Vd~~~~~v~V  305 (1039)
                      ||||||++|+||++||+||++||.+++.||||+||++||++.|+.+.|++|+|||||+|+||||||||+.|++++++|+|
T Consensus       212 yIYIEA~KqshV~~Ai~gv~niy~~~~~lVPikEM~dvLkV~K~~v~L~~gswVRiKrG~YKgDLAqVd~Vd~~~n~v~l  291 (1024)
T KOG1999|consen  212 YIYIEADKQSHVKEAIEGVRNIYANRILLVPIKEMPDVLKVVKKVVQLSEGSWVRIKRGKYKGDLAQVDDVDENRNRVRL  291 (1024)
T ss_pred             eEEEEechhHHHHHHHhhhhhheeccEEEEehhHhhhhhhhhhhhhccCccceEEEeccccccceeeeeeecccCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeccchhhhhhhccccccccCCCCCCCCCCCCHHHHHhccccEeeeccCCCCceEEEeCCceeccceEEEEEecccee
Q 001639          306 KLIPRIDLQALANKLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGDYFENIGGMLFKDGFLYKTVSMKSIS  385 (1039)
Q Consensus       306 klvPRiD~~~~~~~~~~~~~~kkk~~RPp~rlFn~~e~~~~~~~v~~~r~~~~g~~~~~~~~~~y~dGfL~K~~~i~~l~  385 (1039)
                      ||||||||+++.+++.  ...++|++||++||||..++++..++++.+|+..+|+||++++|++|+||||||.|+|++|+
T Consensus       292 KlIPRIDyq~~~~~~~--~~~~~ka~~p~~R~~~~~~~~~~~ir~~~~~~~~~Gd~l~~~gn~~~~dGFLyK~v~i~sI~  369 (1024)
T KOG1999|consen  292 KLIPRIDYQKLLGKLE--ETTDKKAFRPAPRRPNQKEFDEEAIRSEGRRDHSRGDYLEFEGNELFKDGFLYKDVSISSII  369 (1024)
T ss_pred             EEeccccHHhhhcccc--ccchhhccCCcccCCCccccchhhhhhccccccccCceEEecCCceeccceeeeeeecceee
Confidence            9999999999998877  33456777999999999999999999999999999999998888899999999999999999


Q ss_pred             ccCCCCChHHhhcccCCCCCCcchhhhhhHHhhcccc-CccCCCCEEEEecccccCceeEEEEEcCCeEEEeecCCCCCc
Q 001639          386 AQNIQPTFDELEKFRTPGENGESDIASLSTLFANRKK-GHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPK  464 (1039)
Q Consensus       386 ~~~V~PTleEL~~F~~~~~~~~~dl~~ls~~~~~~~~-~~F~~GD~V~V~~Gel~gl~G~V~~V~~d~V~i~~~~~~l~~  464 (1039)
                      +++|+|||+||+||+...+  ++||..++++++++.+ +.|++||+|+||.|||+|++|+|++|++.+|+|++++++|+.
T Consensus       370 t~gV~PT~dELekF~~~~e--~~Dl~~~st~~~~r~~~~~F~~GD~VeV~~Gel~glkG~ve~vdg~~vti~~~~e~l~~  447 (1024)
T KOG1999|consen  370 TDGVKPTLDELEKFNPSNE--EGDLEWVSTLKSNRKKKHLFSPGDAVEVIVGELKGLKGKVESVDGTIVTIMSKHEDLKG  447 (1024)
T ss_pred             ecCcccCHHHHHhhcCCCc--cccceeeeeeccccccccccCCCCeEEEeeeeeccceeEEEeccCceEEEeeccccCCC
Confidence            9999999999999998876  5678888766655554 459999999999999999999999999999999999999999


Q ss_pred             ceeeccccceeeccCCCceEEecccccCceEEEEEEeCcEEEEEeCCCCceEEEeccccccccccccccccCCceEeeee
Q 001639          465 TLAVNSKELCKYFEPGNHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYELRDL  544 (1039)
Q Consensus       465 ~i~v~~~~LrK~F~~GDhVkVi~G~~~GetGlVv~Ve~~~v~llSD~t~~ei~V~~~dL~~~~e~~~g~~~~g~y~l~DL  544 (1039)
                      +|+|++++|||||++|||||||+|+|+|+|||||+|+++.|+||||++|+|++||++||++|++|+++++++|+|+||||
T Consensus       448 pl~~~~~eLrKyF~~GDhVKVi~G~~eG~tGlVvrVe~~~vi~~Sd~t~eel~Vf~~dlq~c~ev~~gv~~~ge~e~hdl  527 (1024)
T KOG1999|consen  448 PLEVPASELRKYFEPGDHVKVIAGRYEGDTGLVVRVEQGDVILLSDLTMEELKVFARDLQLCSEVTLGVEKSGEYELHDL  527 (1024)
T ss_pred             ccccchHhhhhhccCCCeEEEEeccccCCcceEEEEeCCeEEEEecCccceeeEEehhcccchheeecccccccccccce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCceEEEEEEccceeEEeccCCCCCcEEEEechhhhhccc-CCcccccCCCCeecCCCEEEEecCCCCCceecEEE
Q 001639          545 VLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLE-KKSNVQDRNKNTVAVKDVVRIVEGPCKGKQGPVEH  623 (1039)
Q Consensus       545 VqLd~~tVGvIvrverd~~~VL~~~~~~g~v~~v~~~~I~~k~~-~~~~a~D~~gn~I~~~D~Vkv~~Gp~kgr~G~V~h  623 (1039)
                      ||||.++||||++++++.|+||+++   |+|++|++++|.+|++ ++++|+|+++|+|+++|+|+++.||++||+|.|+|
T Consensus       528 VqLd~~~vgvI~rle~e~~~vl~~~---g~v~~i~~~~i~~kk~~r~~~~~D~~~n~I~~kD~Vkvi~Gp~~g~~G~v~~  604 (1024)
T KOG1999|consen  528 VQLDNQNVGVIVRLERETFQVLGMN---GKVVTIRKSSITKKKDNRKAVAVDRNGNEIRVKDTVKVIGGPSKGREGEVLH  604 (1024)
T ss_pred             eecCCCcEEEEEEecchheeeecCc---CceEEEeechhhhhhhhhhheeecccCCeecccceEEEecCCCCCccCccce
Confidence            9999999999999999999999985   7999999999999986 56999999999999999999999999999999999


Q ss_pred             EECCEEEEEeCceeeeceEEEEeCCceEEecccCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001639          624 IYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANGDRNGDAYSRFNSLRTPPRIPQSPGRYSRGGPPAGGRNRGGRGG  703 (1039)
Q Consensus       624 I~r~~lFl~~~~~~EN~Gifv~~a~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~sp~~~~~~~~~~gg~~~~~~~~  703 (1039)
                      |||+++|||||+++||+||||||++||.++|++++. ..+....+.|++|+ |.++ ++|+.++.+ +.++|++.++|||
T Consensus       605 i~r~~~F~h~r~~~En~Gv~vck~k~~~~~g~~~st-~~~~~~~~~l~~ms-P~r~-~sp~~~~~~-~ga~g~~gggrGg  680 (1024)
T KOG1999|consen  605 IYRPFVFLHSRKNLENGGVFVCKEKNLILAGGKKST-NSLAFNKGALAPMS-PGRI-QSPMGPSGG-PGAFGGHGGGRGG  680 (1024)
T ss_pred             eecceeeeeehhhcccCCeEEEecCCceeccccCcc-cchhhcccccCCCC-cccc-cCCcCCCCC-CCCcCcCccCccC
Confidence            999999999999999999999999999999997642 11111223444443 4322 344332211 1122333344444


Q ss_pred             --CccccCcEEEEeecCCCCceeEEEeecCCeEEEEecCCceEEEEecCccccccc-----cccCCC-CC-------CC-
Q 001639          704 --HDALVGTTVKVRLGPYKGYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNVV-----VSTPYR-DT-------PR-  767 (1039)
Q Consensus       704 --~d~liGktV~I~~GpyKG~~G~Vkd~t~~~arVELhs~~k~I~V~r~~l~~~~~-----~~~py~-~~-------p~-  767 (1039)
                        ++.+|||||+|+.||||||+|+|||+|+++||||||++|+||+|++.++..++.     ..++|+ ++       |+ 
T Consensus       681 ~rd~~l~GktVrI~~Gp~KG~~GivkD~~~~~arVELhs~~~ti~vd~~~~~~v~~~~~~g~~~sYg~~~~~~g~~~~~~  760 (1024)
T KOG1999|consen  681 NRDDSLLGKTVRIRLGPKKGYLGIVKDVNGDTARVELHSKCVTIKVDRLKRKIVGSTRDGGETSSYGERTPGYGRVTPAR  760 (1024)
T ss_pred             cCcchhcCcEEEEecCCcccccceeEeccCCeeEEEEEeccEEEEechhhceEEeeccCCCCccccccccccccccCccc
Confidence              459999999999999999999999999999999999999999999999988755     356676 23       33 


Q ss_pred             CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCC
Q 001639          768 YGMGSETPMHPSRTPLHP-YMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPR--DNWEDGNPGSWGTSPQYQPGSPP  844 (1039)
Q Consensus       768 y~~g~~tp~~~~~TP~~~-~~TP~~~g~~TP~h~g~~TP~~~~aW~p~~p~tp~~--~~~~~~~p~~~~~tp~y~p~tp~  844 (1039)
                      |++||+|||||++||+|+ ++||++++++||+|||+|||||++||+|++++||++  ++|+++.+++|+.+|+|.     
T Consensus       761 ~~~Gs~tp~~~s~tpl~~~s~tp~~~~~~Tp~~dG~rTP~r~~aW~~~~~~tPa~~~~~~~~g~~g~~g~sp~~~-----  835 (1024)
T KOG1999|consen  761 YGMGSSTPMYGSNTPLWGGSRTPARDGGATPSHDGSRTPARGRAWNPYNGKTPARNFDNREPGFEGSGGRSPQGY-----  835 (1024)
T ss_pred             cCCCCcCccCCCCCCCCCcccCccccCCCCcCCCCCcCCCCCCCcCCCCCCCCccccCCcccCCCCCCCCCCCCC-----
Confidence            357999999999999998 999999999999999999999999999999999999  678888888888877653     


Q ss_pred             CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCc----CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC-CCCCCCCC
Q 001639          845 SRAYEAPTPGSGWASTPG-GNYSDAGTPRDSSSTYV----NAPSPYLPSTPGG-QPMTPNSASYLPGTPGG-QPMTPGTG  917 (1039)
Q Consensus       845 ~~~y~~~TPg~~~~~tP~-~~~~~~~tP~~~~~~y~----~~pspy~p~tp~~-~p~tp~~~~y~P~tPg~-~p~tp~~~  917 (1039)
                         |.|+|||+.|+++++ +.|+.+.||....|+|.    ++|+|   +++++ ++||||+++|.|+|||+ +|||||++
T Consensus       836 ---~~a~Tpg~~~~~~~~~~~~~~~g~~~~~gsa~~~~~~~sps~---sp~~~~~~~tpss~s~~p~tpgg~~~~Tpgs~  909 (1024)
T KOG1999|consen  836 ---YSAPTPGSNWGSTGGGGAPAWPGTPNGNGSAWGPSGQNSPSP---SPWGYQNNPTPSSSSYGPKTPGGGNPMTPGSG  909 (1024)
T ss_pred             ---cCCCCCCCCCCcCCCCCCcCCCCCCCCCccccccccCCCCCC---CCccCccCCCCcccccCCCCCCCCCCCCCCcc
Confidence               678999999887754 56777788866666774    34443   44444 48899999999999998 89999994


Q ss_pred             CCCCCCCccCCCCCCCcccCcEEE-EcCCCcccEEEEEEeCCCCeEEEEeccCCCCceEEecCCCeeecCCCCCCcEEEE
Q 001639          918 GLDAMSPVIGADNEGPWFMPDILV-RRSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIM  996 (1039)
Q Consensus       918 g~~~~~p~~~~~~~~~W~~~~I~V-~~~g~~~~~GvV~~V~~~g~~~V~l~~~~~g~~v~v~~~~Le~V~P~kgd~VkVi  996 (1039)
                       ++.++... ++....| .++..+ +..  -+|.++||+|.+ |.|+|+|.++  +++++++++||+++.|.+||.+||+
T Consensus       910 -~d~~~~~~-~~~~~~~-~~d~~~~~~~--~G~~~~ir~v~~-G~~sv~~~de--~~~~~~s~~~~a~~~p~~~d~~k~~  981 (1024)
T KOG1999|consen  910 -LDSGSGNG-GDGNSSW-GPDTSLDTQL--VGQTGIIRSVAD-GGCSVWLGDE--GETISNSKPHLAPAPPCKGDDVKSI  981 (1024)
T ss_pred             -ccccCCCC-CccceEe-ccccccccee--cccccceeeccC-CceeeecCCC--CcccccccccCccCCCCCCCCcccc
Confidence             55554322 1122223 334333 110  166889999977 9999999985  7899999999999999999999999


Q ss_pred             cCCCCCceEEEEEEeCCCcEEEecCCCceEEEeccccccccCC
Q 001639          997 GGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQP 1039 (1039)
Q Consensus       997 ~G~~rG~tG~LisiD~~dgiVk~d~~~~~kil~~~~L~Kl~~~ 1039 (1039)
                      .|.+||.+|+|+++|+.+||||+|.+.++|||++.+||||++|
T Consensus       982 ~g~~~g~~~~~~~~dg~~g~~~~d~~~~~k~l~~~~~~k~~~~ 1024 (1024)
T KOG1999|consen  982 WGDDRGSTGKLVGNDGWDGIVRIDETSDIKILNLGLLCKMVSP 1024 (1024)
T ss_pred             ccccccccccccCCCcccceecccccccchhhhhhhhhhccCC
Confidence            9999999999999999999999999999999999999999875

>COG5164 SPT5 Transcription elongation factor [Transcription]	Back alignment and domain information

>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]	Back alignment and domain information

>PRK08559 nusG transcription antitermination protein NusG; Validated	Back alignment and domain information

>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain	Back alignment and domain information

>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal	Back alignment and domain information

>COG5164 SPT5 Transcription elongation factor [Transcription]	Back alignment and domain information

>COG0250 NusG Transcription antiterminator [Transcription]	Back alignment and domain information

>PF11942 Spt5_N: Spt5 transcription elongation factor, acidic N-terminal; InterPro: IPR022581 This is the very acidic N-terminal domain of the early transcription elongation factor Spt5 []	Back alignment and domain information

>PRK05609 nusG transcription antitermination protein NusG; Validated	Back alignment and domain information

>TIGR00922 nusG transcription termination/antitermination factor NusG	Back alignment and domain information

>TIGR01956 NusG_myco NusG family protein	Back alignment and domain information

>PF12815 CTD: Spt5 C-terminal nonapeptide repeat binding Spt4; PDB: 2E70_A	Back alignment and domain information

>PRK09014 rfaH transcriptional activator RfaH; Provisional	Back alignment and domain information

>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p	Back alignment and domain information

>TIGR01955 RfaH transcriptional activator RfaH	Back alignment and domain information

>KOG0260 consensus RNA polymerase II, large subunit [Transcription]	Back alignment and domain information

>KOG0260 consensus RNA polymerase II, large subunit [Transcription]	Back alignment and domain information

>PF12815 CTD: Spt5 C-terminal nonapeptide repeat binding Spt4; PDB: 2E70_A	Back alignment and domain information

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2837 consensus Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing [RNA processing and modification]	Back alignment and domain information

>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms	Back alignment and domain information

>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar	Back alignment and domain information

>PF02357 NusG: Transcription termination factor nusG; InterPro: IPR006645 This sequence is identified by the NGN domain and is represented by the bacterial antitermination protein NusG	Back alignment and domain information

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins	Back alignment and domain information

>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms	Back alignment and domain information

>KOG4315 consensus G-patch nucleic acid binding protein [General function prediction only]	Back alignment and domain information

>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar	Back alignment and domain information

>PRK12281 rplX 50S ribosomal protein L24; Reviewed	Back alignment and domain information

>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif	Back alignment and domain information

>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif	Back alignment and domain information

>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal	Back alignment and domain information

>CHL00141 rpl24 ribosomal protein L24; Validated	Back alignment and domain information

>PRK00004 rplX 50S ribosomal protein L24; Reviewed	Back alignment and domain information

>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production []	Back alignment and domain information

>KOG0262 consensus RNA polymerase I, large subunit [Transcription]	Back alignment and domain information

>CHL00141 rpl24 ribosomal protein L24; Validated	Back alignment and domain information

>KOG1708 consensus Mitochondrial/chloroplast ribosomal protein L24 [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production []	Back alignment and domain information

>PRK01191 rpl24p 50S ribosomal protein L24P; Validated	Back alignment and domain information

>TIGR00922 nusG transcription termination/antitermination factor NusG	Back alignment and domain information

>COG0250 NusG Transcription antiterminator [Transcription]	Back alignment and domain information

>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle	Back alignment and domain information

>PRK09014 rfaH transcriptional activator RfaH; Provisional	Back alignment and domain information

>PRK01191 rpl24p 50S ribosomal protein L24P; Validated	Back alignment and domain information

>PRK12281 rplX 50S ribosomal protein L24; Reviewed	Back alignment and domain information

>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46	Back alignment and domain information

>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46	Back alignment and domain information

>PRK05609 nusG transcription antitermination protein NusG; Validated	Back alignment and domain information

>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]	Back alignment and domain information

>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic	Back alignment and domain information

>PRK08559 nusG transcription antitermination protein NusG; Validated	Back alignment and domain information

>TIGR01955 RfaH transcriptional activator RfaH	Back alignment and domain information

>PTZ00194 60S ribosomal protein L26; Provisional	Back alignment and domain information

>PRK00004 rplX 50S ribosomal protein L24; Reviewed	Back alignment and domain information

>PTZ00415 transmission-blocking target antigen s230; Provisional	Back alignment and domain information

>TIGR01956 NusG_myco NusG family protein	Back alignment and domain information

>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic	Back alignment and domain information

>PTZ00194 60S ribosomal protein L26; Provisional	Back alignment and domain information

>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK06763 F0F1 ATP synthase subunit alpha; Validated	Back alignment and domain information

>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle	Back alignment and domain information

>PHA03378 EBNA-3B; Provisional	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PTZ00415 transmission-blocking target antigen s230; Provisional	Back alignment and domain information

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4156 consensus Claspin, protein mediating phosphorylation and activation of Chk1 protein kinase in the DNA replication checkpoint response [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]	Back alignment and domain information

>PF04006 Mpp10: Mpp10 protein; InterPro: IPR007151 This family includes proteins related to Mpp10 (M phase phosphoprotein 10)	Back alignment and domain information

>PF14632 SPT6_acidic: Acidic N-terminal SPT6	Back alignment and domain information

>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]	Back alignment and domain information

>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1039
3h7h_B		106	Crystal Structure Of The Human Transcription Elonga		1e-17
2do3_A		69	Solution Structure Of The Third Kow Motif Of Transc		4e-07
3p8b_B		152	X-Ray Crystal Structure Of Pyrococcus Furiosus Tran		1e-06
3qqc_D		163	Crystal Structure Of Archaeal Spt45 BOUND TO THE RN		1e-06
2exu_A		200	Crystal Structure Of Saccharomyces Cerevisiae Trans		1e-05
2e70_A		71	Solution Structure Of The Fifth Kow Motif Of Human		1e-04

>pdb|3H7H|B Chain B, Crystal Structure Of The Human Transcription Elongation Factor Dsif, Hspt4HSPT5 (176-273) Length = 106