Citrus Sinensis ID: 001643

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------104
MMMESSEGVRPAAGVAMEFSVSDEKAAETTSFSSATATRVPRRLRKRLLAECSRSPCTVEEIEAKLRHADLRRQQFYEKLSSKARPKPRSPPRSSSNEEDLGQRLEAKLQAAQQKRLSILAKAQKRLARLDELRQAAKTGVEMRFEKEREMLGSKVESRVQKAEANRMLILKAYSQRRDKLKERSSQSLLRRMTRESKYKERVRAAIHQKRLAAEKKRLGLLEAEKKKARARMLQVRRVAKFVSHQREVERRKMREQLEDRLQRAKRQRAEYLRQRARLHTVRINWNRMDKQADVLSRKLARCWRQFLKHRRSTLELARSYDALKINEMSVKSLPFEQLALLIESTATLQTVKTLLERLESRFKIFRAVDAASNHSSCLDSIDHLLKRVASPKKRPTPRTPLRSREAKKVNSSREAGRTPAKLSRYPVRVVLCAYMILGHPDAVFSGQGEREIALAKSAEEFIGQFELLIKVILEGPIQSSDEESDSLPKRWTIRSQLAAFDKAWCSYLNCFVMWKVKDAKSLEDDLVRAACQLELSMIHKCKMTAEGDNGALTHDLKAIQKQVTEDQKLLREKVQHLSGDAGIERMECALSETRSKYFEAKENGSPIGSPITNFLSTSPPSSSAASASVTSLDHKSNQTKGAERPKHVVRSLFREENPSVTKRIDSSASGTSSVSGQLASSVERRSVKENEVIINEYVHNQHYAAFDIFTVNNEKPNIIKAKIRETMEKAFWDGIAESVKQGEHNYDRIIQLVREVRDEICGMAPQSWKEEITEAIDPEILSQVLSSGSLDIDYLGRILEFALTTLQKLSAPANDDDMKANHQRLLKELAEICQIRDESNYSHVNAMIKGLRFVLEQIRALQQEIIRARMRMMEPFLKGPAGLEYLRKGFADRYGPPSDAHTSLPVTLQWLSSILTCKDYEWEEHKSSLSALVSQETSSGLPLPSTTLRTGGSFRVKTSGNQITSSHTSDVSNITVNQQPECKGERLDLMVRLGLLKLVSAITGITEEALPETLMLNLPRLRAVQAQIQKMIVISNR
ccccccccccccccccccccccHHHHHcccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccccccccccccHHHHHHHccccccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHcccHHHHHHHHHHHHcEEEEEcc
cccccccccccccEEEEEEEcccHHHcccccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccHcccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccccccccccccccccccccccHHHcccccccccccHHHHHHHHHHHcccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccHHccccccccccccccccccccccHccccccccccHHHHHHHHccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHcHHHHHHHHHHHHHHHHHHHHcccHHHHccccccccccccccccEcccccccEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHcHHHHHHHHHHHHHEEEEccc
mmmessegvrpaagvamefsvsdekaaettsfssatatRVPRRLRKRLLAecsrspctVEEIEAKLRHADLRRQQFYEKLsskarpkprspprsssneeDLGQRLEAKLQAAQQKRLSILAKAQKRLARLDELRQAAKTGVEMRFEKEREMLGSKVESRVQKAEANRMLILKAYSQRRDKLKERSSQSLLRRMTRESKYKERVRAAIHQKRLAAEKKRLGLLEAEKKKARARMLQVRRVAKFVSHQREVERRKMREQLEDRLQRAKRQRAEYLRQRARLHTVRINWNRMDKQADVLSRKLARCWRQFLKHRRSTLELARSYDALKInemsvkslpFEQLALLIESTATLQTVKTLLERLESRFKIFRAVdaasnhssclDSIDHLLKRvaspkkrptprtplrsreakkvnssreagrtpaklsrypVRVVLCAYMIlghpdavfsgqgEREIALAKSAEEFIGQFELLIKVILegpiqssdeesdslpkrwTIRSQLAAFDKAWCSYLNCFVMWKVKDAKSLEDDLVRAACQLELSMIHKckmtaegdngalTHDLKAIQKQVTEDQKLLREKVQHLSGDAGIERMECALSETRSKYFeakengspigspitnflstsppsssaasasvtsldhksnqtkgaerpkHVVRSLfreenpsvtkridssasgtssvsgqlassverrsvkENEVIINEYvhnqhyaafdiftvnnekpnIIKAKIRETMEKAFWDGIAESVKQGEHNYDRIIQLVREVRDEICGMAPQSWKEEITEAIDPEILSQVlssgsldidYLGRILEFALTTLQklsapandddmKANHQRLLKELAEICQirdesnysHVNAMIKGLRFVLEQIRALQQEIIRARMRMMepflkgpagLEYLRKgfadrygppsdahtslpVTLQWLSSIltckdyeweeHKSSLSALVSqetssglplpsttlrtggsfrvktsgnqitsshtsdvsnitvnqqpeckgeRLDLMVRLGLLKLVSAITGiteealpetlMLNLPRLRAVQAQIQKMIVISNR
mmmessegvrpaagVAMEFSVSDEkaaettsfssatatrvprrLRKRLlaecsrspctveeiEAKLRHADLRRQQFYeklsskarpkprspprsssneedLGQRLEAKLQAAQQKRLSILAKAQKRLARLDELRQAaktgvemrfekeremlgskvesrvqKAEANRMLILKAysqrrdklkerssqsllrrmtreskykervRAAIhqkrlaaekkrlglleaekkkararmlqvrrvakfvshqreverrkmreqlEDRLQRAKRqraeylrqrarlhtvrinwnrmdkqADVLSRKLARCWRQFLKHRRSTLELARSYDALKINEMSVKSLPFEQLALLIESTATLQTVKTLLERLESRFKIFRAVDAASNHSSCLDSIDHLlkrvaspkkrptprtplrsreakkvnssreagrtpaklsrypvRVVLCAYMILGHPDAVFSGQGEREIALAKSAEEFIGQFELLIKVILEGPIQssdeesdslpkRWTIRSQLAAFDKAWCSYLNCFVMWKVKDAKSLEDDLVRAACQLELSMIHKCKMTAEGDNGALTHDLKAIQKQVTEDQKLLREKvqhlsgdagieRMECALSETRSKYFEAKENGSPIGSPITNFLSTSPPSSSAASASVTSLdhksnqtkgaerpkhvvrslfreenpsvtkridssasgtssvsgqlassverrsvKENEVIINEYVHNQHYAAFDIFTVNNEKPNIIKAKIRETMEKAFWDGIAEsvkqgehnyDRIIQLVREVRDEICGMAPQSWKEEITEAIDPEILSQVLSSGSLDIDYLGRILEFALTTLQKLSAPANDDDMKANHQRLLKELAEICQIRDESNYSHVNAMIKGLRFVLEQIRALQQEIIRARMRMMEPFLKGPAGLEYLRKGFADRYGPPSDAHTSLPVTLQWLSSILTCKDYEWEEHKSSLSALVSqetssglplpsttlrtggsfrVKTSgnqitsshtsdvsnitvnqqpeckgERLDLMVRLGLLKLVSAITGITEEALPETLMLNLPRLRAVQAQIQKMIVISNR
MMMESSEGVRPAAGVAMEFSVSDEKaaettsfssatatRVPRRLRKRLLAECSRSPCTVEEIEAKLRHADLRRQQFYEklsskarpkprspprsssNEEDLGQRLEAKLQAAQQKRLSILAKAQKRLARLDELRQAAKTGVEMRFEKEREMLGSKVESRVQKAEANRMLILKAYSQRRDKLKERSSQSLLRRMTRESKYKERVRAAIHQKRLAAEKKRLGLLEAEKKKARARMLQVRRVAKFVSHQREVERRKMREQLEDRLQRAKRQRAEYLRQRARLHTVRINWNRMDKQADVLSRKLARCWRQFLKHRRSTLELARSYDALKINEMSVKSLPFEQLALLIESTATLQTVKTLLERLESRFKIFRAVDAASNHSSCLDSIDHLLKRVAspkkrptprtplrsrEAKKVNSSREAGRTPAKLSRYPVRVVLCAYMILGHPDAVFSGQGEREIALAKSAEEFIGQFELLIKVILEGPIQSSDEESDSLPKRWTIRSQLAAFDKAWCSYLNCFVMWKVKDAKSLEDDLVRAACQLELSMIHKCKMTAEGDNGALTHDLKAIQKQVTEDQKLLREKVQHLSGDAGIERMECALSETRSKYFEAKENGSPIGSPITNFLstsppsssaasasvtsLDHKSNQTKGAERPKHVVRSLFREENPSVTKRIDssasgtssvsGQLASSVERRSVKENEVIINEYVHNQHYAAFDIFTVNNEKPNIIKAKIRETMEKAFWDGIAESVKQGEHNYDRIIQLVREVRDEICGMAPQSWKEEITEAIDPEILSQVLSSGSLDIDYLGRILEFALTTLQKLSAPANDDDMKANHQRLLKELAEICQIRDESNYSHVNAMIKGLRFVLEQIRALQQEIIRARMRMMEPFLKGPAGLEYLRKGFADRYGPPSDAHTSLPVTLQWLSSILTCKDYEWEEHKSSLSALVSQETSSGLPLPSTTLRTGGSFRVKTSGNQITSSHTSDVSNITVNQQPECKGERLDLMVRLGLLKLVSAITGITEEALPETLMLNLPRLRAVQAQIQKMIVISNR
*******************************************************************************************************************************************************************************************************************************************************************************YLRQRARLHTVRINWNRMDKQADVLSRKLARCWRQFLKHRRSTLELARSYDALKINEMSVKSLPFEQLALLIESTATLQTVKTLLERLESRFKIFRAVDAASNHSSCLDSIDHLL*************************************SRYPVRVVLCAYMILGHPDAVFSGQGEREIALAKSAEEFIGQFELLIKVILEGP*************RWTIRSQLAAFDKAWCSYLNCFVMWKVKDAKSLEDDLVRAACQLELSMIHKCKMTAEGDNGALTHDLKAI***********************************************************************************************************************************EVIINEYVHNQHYAAFDIFTVNNEKPNIIKAKIRETMEKAFWDGIAESVKQGEHNYDRIIQLVREVRDEICGMAPQSWKEEITEAIDPEILSQVLSSGSLDIDYLGRILEFALTTLQKL**************RLLKELAEICQIRDESNYSHVNAMIKGLRFVLEQIRALQQEIIRARMRMMEPFLKGPAGLEYLRKGFADRYGPPSDAHTSLPVTLQWLSSILTCKDYEWE**********************************************************CKGERLDLMVRLGLLKLVSAITGITEEALPETLMLNLPRLRAVQAQIQKMIVI***
*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************LIESTATLQTVKTLLERLESRFKIF***********************************************************YPVRVVLCAYMILGHPDA***************AEEFIGQFELLIKVILEG*******************SQLAAFDKAWCSYLNCFVMWKVKDAKSLEDDLVRAACQLELSMIH*****************************L*************************************************************************************************************************EVIINEYVHNQHYAA******************RETMEKAFWDGIAESVKQGEHNYDRIIQLVREVRDEICGMAPQSWKEEITEAIDPEILSQVLSSGSLDIDYLGRILEFALTTLQKLSAPANDDDMKANHQRLLKELAEICQIRDESNYSHVNAMIKGLRFVLEQIRALQQEIIRARMRMMEPFLKGPAGLEYLRKGFADRYGPPSDAHTSLPVTLQWLSSILTC***********************************************************NQQPECKGERLDLMVRLGLLKLVSAITGITEEALPETLMLNLPRLRAVQAQIQKMIVISNR
***********AAGVAMEFS********************PRRLRKRLLAECSRSPCTVEEIEAKLRHADLRRQQFYEK***********************QRLEAKLQAAQQKRLSILAKAQKRLARLDELRQAAKTGVEMRFEKEREMLGSKVESRVQKAEANRMLILKAYSQ************LLRRMTRESKYKERVRAAIHQKRLAAEKKRLGLLEAEKKKARARMLQVRRVAKFVSHQREVERRKMREQLEDRLQRAKRQRAEYLRQRARLHTVRINWNRMDKQADVLSRKLARCWRQFLKHRRSTLELARSYDALKINEMSVKSLPFEQLALLIESTATLQTVKTLLERLESRFKIFRAVDAASNHSSCLDSIDHLLKRVA******************************AKLSRYPVRVVLCAYMILGHPDAVFSGQGEREIALAKSAEEFIGQFELLIKVILEGPIQ*********PKRWTIRSQLAAFDKAWCSYLNCFVMWKVKDAKSLEDDLVRAACQLELSMIHKCKMTAEGDNGALTHDLKAIQKQVTEDQKLLREKVQHLSGDAGIERMECALSETRSKYFEAKENGSPIGSPITNFLS*****************************KHVVRSLFREE****************************RSVKENEVIINEYVHNQHYAAFDIFTVNNEKPNIIKAKIRETMEKAFWDGIAESVKQGEHNYDRIIQLVREVRDEICGMAPQSWKEEITEAIDPEILSQVLSSGSLDIDYLGRILEFALTTLQKLSAPANDDDMKANHQRLLKELAEICQIRDESNYSHVNAMIKGLRFVLEQIRALQQEIIRARMRMMEPFLKGPAGLEYLRKGFADRYGPPSDAHTSLPVTLQWLSSILTCKDYEWE******************PLPSTTLRTGGSFRVKTSGNQITSSHTSDVSNITVNQQPECKGERLDLMVRLGLLKLVSAITGITEEALPETLMLNLPRLRAVQAQIQKMIVISNR
*********RPAAGVAMEFSVSDE****************P******LLAE*****CTVEEIEAKLRHADLRRQQFYEKLSSKA***************DLGQRLEAKLQAAQQKRLSILAKAQKRLARLDELRQAAKTGVEMRFEKEREMLGSKVESRVQKAEANRMLILKAYSQRRDKLKERSSQSLLRRMTRESKYKERVRAAIHQKRLAAEKKRLGLLEAEKKKARARMLQVRRVAKFVSHQREVERRKMREQLEDRLQRAKRQRAEYLRQRARLHTVRINWNRMDKQADVLSRKLARCWRQFLKHRRSTLELARSYDALKINEMSVKSLPFEQLALLIESTATLQTVKTLLERLESRFKIFRA**********LDSI****KRVAS*******************************LSRYPVRVVLCAYMILGHPDAVFSGQGEREIALAKSAEEFIGQFELLIKVILEGPIQ***********RWTIRSQLAAFDKAWCSYLNCFVMWKVKDAKSLEDDLVRAACQLELSMIHKCKMTAEGDNGALTHDLKAIQKQVTEDQKLLREKVQHLSGDAGIERMECALSETRSKYFEAKE************************************************************************SGQLASSVERRSVKENEVIINEYVHNQHYAAFDIFTVNNEKPNIIKAKIRETMEKAFWDGIAESVKQGEHNYDRIIQLVREVRDEICGMAPQSWKEEITEAIDPEILSQVLSSGSLDIDYLGRILEFALTTLQKLSAPANDDDMKANHQRLLKELAEICQIRDESNYSHVNAMIKGLRFVLEQIRALQQEIIRARMRMMEPFLKGPAGLEYLRKGFADRYGPPSDAHTSLPVTLQWLSSILTCKDYEWEEHKSSLSALVS*ETSSGLPLPSTTLRTGGSFRVK*********************QPECKGERLDLMVRLGLLKLVSAITGITEEALPETLMLNLPRLRAVQAQIQKMIVISNR
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMMESSEGVRPAAGVAMEFSVSDEKAAETTSFSSATATRVPRRLRKRLLAECSRSPCTVEEIEAKLRHADLRRQQFYEKLSSKARPKPRSPPRSxxxxxxxxxxxxxxxxxxxxxRLSIxxxxxxxxxxxxxxxxxxxxxVEMRFEKEREMLGSKVESRVQKAEANRMLILKAYSQRRDKLKERSSQSLLRRMTRESKYKERVRAAIHQKRxxxxxxxxxxxxxxxxxxxxxMLQVRRVAKFVSHQRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRINWNRMDKQADVLSRKLARCWRQFLKHRRSTLELARSYDALKINEMSVKSLPFEQLALLIESTATLQTVKTLLERLESRFKIFRAVDAASNHSSCLDSIDHLLKRVASPKKRPTPRTPLRSREAKKVNSSREAGRTPAKLSRYPVRVVLCAYMILGHPDAVFSGQGEREIALAKSAEEFIGQFELLIKVILEGPIQSSDEESDSLPKRWTIRSQLAAFDKAWCSYLNCFVMWKVKDAKSLEDDLVRAACQLELSMIHKCKMTAEGDNGALTHDLKAIQKQVTEDQKLLREKVQHLSGDAGxxxxxxxxxxxxxxxxxxxxxGSPIGSPITNFLSTSPPSSSAASASVTSLDHKSNQTKGAERPKHVVRSLFREENPSVTKRIDSSASGTSSVSGQLASSVERRSVKENEVIINEYVHNQHYAAFDIFTVNNEKPNIIKAKIRETMEKAFWDGIAESVKQGEHNYDRIIQLVREVRDEICGMAPQSWKEEITEAIDPEILSQVLSSGSLDIDYLGRILEFALTTLQKLSAPANDDDMKANHQRLLKELAEICQIRDESNYSHVNAMIKGxxxxxxxxxxxxxxxxxxxxxMMEPFLKGPAGLEYLRKGFADRYGPPSDAHTSLPVTLQWLSSILTCKDYEWEEHKSSLSALVSQETSSGLPLPSTTLRTGGSFRVKTSGNQITSSHTSDVSNITVNQQPECKGERLDLMVRLGLLKLVSAITGITEEALPETLMLNLPRLRAVQAQIQKMIVISNR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1038 2.2.26 [Sep-21-2011]
Q9NUJ3509 T-complex protein 11-like yes no 0.155 0.316 0.267 2e-09
Q8BTG3509 T-complex protein 11-like yes no 0.152 0.310 0.265 7e-08
Q8WWU5 503 T-complex protein 11 homo no no 0.173 0.357 0.252 1e-05
A7Z033519 T-complex protein 11-like no no 0.125 0.250 0.257 1e-05
Q01755 566 T-complex protein 11 OS=M no no 0.130 0.238 0.258 3e-05
Q568Z0517 T-complex protein 11-like no no 0.194 0.390 0.220 0.0003
Q5XI00 566 T-complex protein 11 homo no no 0.153 0.280 0.230 0.0005
Q8IDX63130 Reticulocyte-binding prot yes no 0.184 0.061 0.234 0.0007
Q8K1H7517 T-complex protein 11-like no no 0.127 0.255 0.232 0.0008
>sp|Q9NUJ3|T11L1_HUMAN T-complex protein 11-like protein 1 OS=Homo sapiens GN=TCP11L1 PE=1 SV=1 Back     alignment and function desciption
 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 91/176 (51%), Gaps = 15/176 (8%)

Query: 718 NIIKAKIRETMEKAFWDGIAESVKQGEHNYDRIIQLVREVRDEICGM---APQSWKEEIT 774
           N +K +++E + KAFWD ++  + +    YD  I+LV E+++ +           + +IT
Sbjct: 98  NSLKKRVKEIVHKAFWDCLSVQLSEDPPAYDHAIKLVGEIKETLLSFLLPGHTRLRNQIT 157

Query: 775 EAIDPEILSQVLSSGSLDIDYLGRILEFALTTLQKLSAPANDDDMKANHQRLLKELAEIC 834
           E +D +++ Q   +G+LDI    ++ EF +  +  L APA D+++K      LK++ EI 
Sbjct: 158 EVLDLDLIKQEAENGALDI---SKLAEFIIGMMGTLCAPARDEEVKK-----LKDIKEIV 209

Query: 835 QIRDESNYSHVNAM-IKGLRFVLEQIRA--LQQEIIRARMRMMEPFLKGPAGLEYL 887
            +  E  +S ++ M +    F +  IR   +QQ +   R +  E   + P  L+++
Sbjct: 210 PLFREI-FSVLDLMKVDMANFAISSIRPHLMQQSVEYERKKFQEILERQPNSLDFV 264

Homo sapiens (taxid: 9606)
>sp|Q8BTG3|T11L1_MOUSE T-complex protein 11-like protein 1 OS=Mus musculus GN=Tcp11l1 PE=2 SV=1 Back     alignment and function description
>sp|Q8WWU5|TCP11_HUMAN T-complex protein 11 homolog OS=Homo sapiens GN=TCP11 PE=2 SV=1 Back     alignment and function description
>sp|A7Z033|T11L2_BOVIN T-complex protein 11-like protein 2 OS=Bos taurus GN=TCP11L2 PE=2 SV=1 Back     alignment and function description
>sp|Q01755|TCP11_MOUSE T-complex protein 11 OS=Mus musculus GN=Tcp11 PE=2 SV=1 Back     alignment and function description
>sp|Q568Z0|T11L2_RAT T-complex protein 11-like protein 2 OS=Rattus norvegicus GN=Tcp11l2 PE=2 SV=1 Back     alignment and function description
>sp|Q5XI00|TCP11_RAT T-complex protein 11 homolog OS=Rattus norvegicus GN=Tcp11 PE=2 SV=1 Back     alignment and function description
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum (isolate 3D7) GN=PF13_0198 PE=3 SV=1 Back     alignment and function description
>sp|Q8K1H7|T11L2_MOUSE T-complex protein 11-like protein 2 OS=Mus musculus GN=Tcp11l2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1038
359486036 1184 PREDICTED: uncharacterized protein LOC10 0.981 0.860 0.699 0.0
255579689 1196 conserved hypothetical protein [Ricinus 0.984 0.854 0.685 0.0
224118348 1178 predicted protein [Populus trichocarpa] 0.965 0.850 0.671 0.0
356543426 1177 PREDICTED: uncharacterized protein LOC10 0.961 0.847 0.644 0.0
357445435 1166 hypothetical protein MTR_2g006520 [Medic 0.947 0.843 0.624 0.0
449444951 1178 PREDICTED: uncharacterized protein LOC10 0.945 0.832 0.625 0.0
449518895 1189 PREDICTED: uncharacterized LOC101216796 0.941 0.821 0.620 0.0
225460372 1172 PREDICTED: uncharacterized protein LOC10 0.956 0.847 0.571 0.0
3574454251066 hypothetical protein MTR_2g006450 [Medic 0.832 0.810 0.637 0.0
2978453281130 T-complex protein 11 [Arabidopsis lyrata 0.944 0.867 0.568 0.0
>gi|359486036|ref|XP_002267907.2| PREDICTED: uncharacterized protein LOC100253141 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1395 bits (3611), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 727/1040 (69%), Positives = 846/1040 (81%), Gaps = 21/1040 (2%)

Query: 2    MMESSEGVRPA--AGVAMEFSVSDEKAAETTSFSSATATRVPRRLRKRLLAECSRSPCTV 59
            M+   +   PA  AG+AM+F VSDE A  +         R             SRSP T 
Sbjct: 1    MVAGVDSSDPATVAGIAMDFPVSDEAAFVSPPRVPPRLRRRLVE---------SRSPSTA 51

Query: 60   EEIEAKLRHADLRRQQFYEKLSSKARPKPRSPPRSSSNEEDLGQRLEAKLQAAQQKRLSI 119
            EEIEAKLR AD RRQQFYE+LSSKARPK RSP RSSSNEEDLGQRLEAKLQAA+QKRLSI
Sbjct: 52   EEIEAKLRDADRRRQQFYERLSSKARPKMRSPSRSSSNEEDLGQRLEAKLQAAEQKRLSI 111

Query: 120  LAKAQKRLARLDELRQAAKTGVEMRFEKEREMLGSKVESRVQKAEANRMLILKAYSQRRD 179
            LAKAQ RLARLDELRQAAK  V+MRFEKER+ LG+KVESRVQ+AE NRMLI KAY QRR 
Sbjct: 112  LAKAQMRLARLDELRQAAKIEVQMRFEKERKNLGTKVESRVQQAEENRMLIQKAYRQRRA 171

Query: 180  KLKERSSQSLLRRMTRESKYKERVRAAIHQKRLAAEKKRLGLLEAEKKKARARMLQVRRV 239
             LKER+SQSLLRRM RESKYKERVRAAIHQKR+AAEKKRLGLLEAEKK+ARAR+LQVRRV
Sbjct: 172  TLKERTSQSLLRRMARESKYKERVRAAIHQKRVAAEKKRLGLLEAEKKRARARVLQVRRV 231

Query: 240  AKFVSHQREVERRKMREQLEDRLQRAKRQRAEYLRQRARLH-TVRINWNRMDKQADVLSR 298
            AK VSHQRE+ERR++++QLEDRLQRAKRQRAEYLRQR RLH + R+N  +M +QAD+LSR
Sbjct: 232  AKSVSHQREIERRRIKDQLEDRLQRAKRQRAEYLRQRGRLHGSARVNLKKMHRQADLLSR 291

Query: 299  KLARCWRQFLKHRRSTLELARSYDALKINEMSVKSLPFEQLALLIESTATLQTVKTLLER 358
            KLARCWR+FLK + +TL LA+++DALKINE  VKS+PFEQLALLIESTATL+TVK LL+R
Sbjct: 292  KLARCWRRFLKLKGTTLTLAKAFDALKINEECVKSMPFEQLALLIESTATLETVKALLDR 351

Query: 359  LESRFKIFRAVDAASNHSSCLDSIDHLLKRVASPKKRPTPRTPLRSREAKKVNSSREAGR 418
             ESRFK+ +A+ AA+   S  ++IDHLLKRVASP +R TPRT  RSR  KK  S R+A +
Sbjct: 352  FESRFKLSQAI-AATTSPSSWNNIDHLLKRVASPNRRGTPRTSSRSRGTKKQGSIRQAAK 410

Query: 419  TPAKLSRYPVRVVLCAYMILGHPDAVFSGQGEREIALAKSAEEFIGQFELLIKVILEGPI 478
             PAKLSRY VRVVLCAYMILGHPDAVFSGQGE EIALA+SA+ F+ +FELLIK+IL+GP+
Sbjct: 411  IPAKLSRYQVRVVLCAYMILGHPDAVFSGQGECEIALAQSAKSFVREFELLIKIILDGPM 470

Query: 479  QSSDEESD-SLPKRWTIRSQLAAFDKAWCSYLNCFVMWKVKDAKSLEDDLVRAACQLELS 537
            QSSDEESD +LP+RW  RSQL AFDKAWC+YLNCFV+WKVKDA+SLE+DLVRAACQLELS
Sbjct: 471  QSSDEESDPTLPRRWAFRSQLVAFDKAWCAYLNCFVVWKVKDARSLEEDLVRAACQLELS 530

Query: 538  MIHKCKMTAEGDNGALTHDLKAIQKQVTEDQKLLREKVQHLSGDAGIERMECALSETRSK 597
            MI  CK+T +GDNGALTHD+KAIQKQVTEDQKLLREKVQHLSGDAGIERMECALSETRSK
Sbjct: 531  MIQTCKITPKGDNGALTHDMKAIQKQVTEDQKLLREKVQHLSGDAGIERMECALSETRSK 590

Query: 598  YFEAKENGSPIGSPITNFLSTSPPSSSAASASVTSLDHKSNQTKGAERPKHVVRSLFREE 657
            YF+A E G  IGSPI  FLS + PSSS A  SV S + +SN  +G+E+  HVVRSLF  E
Sbjct: 591  YFQAMEKGISIGSPIVQFLSPTLPSSSDA-PSVASPEKRSNLIEGSEKSSHVVRSLF-GE 648

Query: 658  NPSVTKRIDSSASGTSSVSGQLASSVERRSVKENEVIINEYVHNQHYAAFDIFTVNNEKP 717
            + S    I   +S  SS+ GQL SS  ++ V ENE+I+NE VH QHYA  D  ++ +++ 
Sbjct: 649  DASSQPGIAGLSSPRSSLDGQLDSSA-KKLVAENELIVNELVHEQHYAFADSLSIADKEQ 707

Query: 718  NIIKAKIRETMEKAFWDGIAESVKQGEHNYDRIIQLVREVRDEICGMAPQSWKEEITEAI 777
              +K KIRETMEKAFWDGI ES+K+ E NYDR+++L+REVRDEIC +APQSWK EI EAI
Sbjct: 708  RNMKTKIRETMEKAFWDGIMESMKEDEPNYDRVVELMREVRDEICNVAPQSWKPEIVEAI 767

Query: 778  DPEILSQVLSSGSLDIDYLGRILEFALTTLQKLSAPANDDDMKANHQRLLKELAEICQIR 837
            D +ILSQVL SG+LDIDYLG+ILE+AL TLQKLSAPAN+ +MK  H+ LLKELAEIC+  
Sbjct: 768  DLDILSQVLKSGNLDIDYLGKILEYALVTLQKLSAPANEGEMKVIHEGLLKELAEICETE 827

Query: 838  DESNYSHVNAMIKGLRFVLEQIRALQQEIIRARMRMMEPFLKGPAGLEYLRKGFADRYGP 897
            D+   SHV AMIKGLRFVLEQ++AL+QEI +AR+RMMEP LKGPAG +YL+  FA+ YG 
Sbjct: 828  DKLKNSHVIAMIKGLRFVLEQVQALKQEISKARIRMMEPLLKGPAGFDYLKNAFANHYGS 887

Query: 898  PSDAHTSLPVTLQWLSSILTCKDYEWEEHKSSLSALVSQETSSGLPLPSTTLRTGGSFRV 957
            PSDA TSLP+T QW+SSI   KD EW EHK+SLSAL + E+S    LPSTTLRTGGS  V
Sbjct: 888  PSDAFTSLPLTAQWISSIWHGKDQEWNEHKNSLSALTNGESSYQGRLPSTTLRTGGSIMV 947

Query: 958  KTSGNQITSSHTSDVSNITVNQQPECKGERLDLMVRLGLLKLVSAITGITEEALPETLML 1017
            KT+G+Q+TS  ++  S    NQQPEC GER+DL+VRLGLLKLVS I+GIT+E+LPETL L
Sbjct: 948  KTNGSQVTSVPSAATS----NQQPECNGERVDLLVRLGLLKLVSGISGITQESLPETLKL 1003

Query: 1018 NLPRLRAVQAQIQKMIVISN 1037
            NL RLRAVQAQIQK+IVIS 
Sbjct: 1004 NLNRLRAVQAQIQKIIVIST 1023

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255579689|ref|XP_002530684.1| conserved hypothetical protein [Ricinus communis] gi|223529777|gb|EEF31715.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224118348|ref|XP_002331460.1| predicted protein [Populus trichocarpa] gi|222873538|gb|EEF10669.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356543426|ref|XP_003540161.1| PREDICTED: uncharacterized protein LOC100810394 [Glycine max] Back     alignment and taxonomy information
>gi|357445435|ref|XP_003592995.1| hypothetical protein MTR_2g006520 [Medicago truncatula] gi|355482043|gb|AES63246.1| hypothetical protein MTR_2g006520 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449444951|ref|XP_004140237.1| PREDICTED: uncharacterized protein LOC101216796 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449518895|ref|XP_004166471.1| PREDICTED: uncharacterized LOC101216796 [Cucumis sativus] Back     alignment and taxonomy information
>gi|225460372|ref|XP_002264425.1| PREDICTED: uncharacterized protein LOC100252816 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357445425|ref|XP_003592990.1| hypothetical protein MTR_2g006450 [Medicago truncatula] gi|355482038|gb|AES63241.1| hypothetical protein MTR_2g006450 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297845328|ref|XP_002890545.1| T-complex protein 11 [Arabidopsis lyrata subsp. lyrata] gi|297336387|gb|EFH66804.1| T-complex protein 11 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1038
TAIR|locus:2017749 1131 AT1G22930 [Arabidopsis thalian 0.584 0.536 0.584 1.2e-175
UNIPROTKB|Q9NUJ3509 TCP11L1 "T-complex protein 11- 0.176 0.359 0.279 5.3e-10
ASPGD|ASPL0000051994960 AN1386 [Emericella nidulans (t 0.397 0.430 0.223 7.7e-09
UNIPROTKB|F1MQ24509 TCP11L1 "Uncharacterized prote 0.177 0.361 0.266 8.1e-09
UNIPROTKB|E2R444508 TCP11L1 "Uncharacterized prote 0.153 0.312 0.258 1.1e-08
ZFIN|ZDB-GENE-050327-11502 tcp11l1 "t-complex 11 (mouse)- 0.183 0.378 0.267 1.3e-08
UNIPROTKB|F1NSD6 511 TCP11L1 "Uncharacterized prote 0.151 0.307 0.273 1.4e-08
MGI|MGI:2444263509 Tcp11l1 "t-complex 11 like 1" 0.152 0.310 0.265 1.8e-08
UNIPROTKB|Q8WWU5 503 TCP11 "T-complex protein 11 ho 0.173 0.357 0.252 7.1e-08
UNIPROTKB|F1PHS5 4691 PLEC "Uncharacterized protein" 0.491 0.108 0.243 1e-07
TAIR|locus:2017749 AT1G22930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1706 (605.6 bits), Expect = 1.2e-175, P = 1.2e-175
 Identities = 365/624 (58%), Positives = 457/624 (73%)

Query:    39 RVPRRLRKRLLAECS--RSPCTVEEIEAKLRHADLRRQQFYEXXXXXXXXXXXXXXXXXX 96
             RVPRR+R+RLL++CS  ++  +V++IE KL HA LRRQQFY                   
Sbjct:    26 RVPRRIRERLLSDCSNKKTVSSVQDIEDKLLHAHLRRQQFYHNVSRKARAKPRSPSRS-- 83

Query:    97 NEEDLGQRLEAKLQAAQQKRLSILAKAQKRLARLDELRQAAKTGVEMRFEKEREMLGSKV 156
             ++E+LGQR+EA+L AA+QKRL ILAKAQ RLA+LDELRQAAKT VE+R E+ER  LG++V
Sbjct:    84 SDEELGQRIEARLLAAEQKRLEILAKAQMRLAKLDELRQAAKTSVEIRSERERVKLGTQV 143

Query:   157 ESRVQKAEANRMLILKAYSQRRDKLKERSSQSLLRRMTRESKYKERVRAAIHQKRLAAEK 216
             ESRVQKAEANRM ILKA  Q+R   KER+SQS++RRM RESKYKERVRA+I+QKR+AAEK
Sbjct:   144 ESRVQKAEANRMKILKASHQKRACAKERTSQSMMRRMARESKYKERVRASINQKRVAAEK 203

Query:   217 KRLGLLEAEKKKARARMLQVRRVAKFVSHQREVERRKMREQLEDRLQRAKRQRAEYLRQR 276
             KRLGLLEAEKKKARAR+ QVR VA  VS+QRE+ER KMR++LED+LQRAKR R+E+LRQR
Sbjct:   204 KRLGLLEAEKKKARARVQQVRHVANSVSNQREIERSKMRDKLEDKLQRAKRYRSEFLRQR 263

Query:   277 ARLH-TVRINWNRMDKQADVLSRKLARCWRQFLKHRRSTLELARSYDALKINEMSVKSLP 335
              R   ++ +  + M + AD+LSRKL+RCWR F++ +R+TL+LA++YD LKINE    SLP
Sbjct:   264 RRQRDSISLYCDMMQEDADLLSRKLSRCWRCFVRQKRTTLDLAKAYDGLKINE----SLP 319

Query:   336 FEQLALLIESTATLQTVKTLLERLESRFKIFRAVDAASNHSSCLDSIDHLLKRVAXXXXX 395
             FEQLA+L+ES  TL+TVK+LL+RLE R +  + V   S   S LD+IDHLLKRVA     
Sbjct:   320 FEQLAMLLESLNTLKTVKSLLDRLEIRLEASKNVTTVSQ-PSILDNIDHLLKRVATPRRK 378

Query:   396 XXXXXXXXXXEAKKVNSSREAGRTPAKLSRYPVRVVLCAYMILGHPDAVFSGQGEREIAL 455
                       + KKV+S R    T  K+SRYPVRVVL A+MILGHPDAVF+GQG++E AL
Sbjct:   379 ATPSTLRSR-KGKKVSSVRNVAGTSVKMSRYPVRVVLSAFMILGHPDAVFNGQGDQEAAL 437

Query:   456 AKSAEEFIGQFELLIKVILEGPIQSSDEESDSLPKRWTIRSQLAAFDKAWCSYLNCFVMW 515
               +A+ F+ + +LLI VI EGP+Q S  ES    K  T+RSQL  FDKAWCS+LN FV+W
Sbjct:   438 NNAAKGFVRELKLLINVIQEGPVQVSGGES----KHRTLRSQLDLFDKAWCSFLNSFVIW 493

Query:   516 KVKDAKSLEDDLVRAACQLELSMIHKCKMTAEGDNGALTHDLKAIQKQVTEDQKLLREKV 575
             KVKDA+ LEDDLVRAACQLELSMI KCK+T EG +  LTHD KAIQ QVT+DQ+LL EKV
Sbjct:   494 KVKDARLLEDDLVRAACQLELSMIQKCKLTPEGVDTMLTHDKKAIQMQVTQDQELLTEKV 553

Query:   576 QHLSGDAGIERMECALSETRSKYFEAKENGSPIGSPITNFLXXXXXXXXXXXXXXXXLDH 635
             +HLSG AG+ERME AL ETR+KYF+AKE+GSP+ + + +F                    
Sbjct:   554 RHLSGVAGVERMESALLETRTKYFQAKEDGSPMANQLAHFFSPSPASSPVQSVSSSS--S 611

Query:   636 KSNQTKGAERPKHVVRSLFREENP 659
             +S  + G E    V RSL +++ P
Sbjct:   612 RSKDSIGVEGSNRVNRSLLKDDTP 635
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0009506 "plasmodesma" evidence=IDA
UNIPROTKB|Q9NUJ3 TCP11L1 "T-complex protein 11-like protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ASPGD|ASPL0000051994 AN1386 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|F1MQ24 TCP11L1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R444 TCP11L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050327-11 tcp11l1 "t-complex 11 (mouse)-like 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NSD6 TCP11L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:2444263 Tcp11l1 "t-complex 11 like 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q8WWU5 TCP11 "T-complex protein 11 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PHS5 PLEC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00026451001
SubName- Full=Chromosome chr12 scaffold_38, whole genome shotgun sequence; (1161 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1038
pfam05794 431 pfam05794, Tcp11, T-complex protein 11 1e-43
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-06
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-05
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 7e-05
COG5281833 COG5281, COG5281, Phage-related minor tail protein 7e-05
PRK00286438 PRK00286, xseA, exodeoxyribonuclease VII large sub 0.002
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 0.003
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.004
>gnl|CDD|218753 pfam05794, Tcp11, T-complex protein 11 Back     alignment and domain information 
 Score =  164 bits (418), Expect = 1e-43
 Identities = 78/319 (24%), Positives = 145/319 (45%), Gaps = 75/319 (23%)

Query: 720  IKAKIRETMEKAFWDGIAESVKQGEHNYDRIIQLVREVRDEICGM--APQSWKEEITEAI 777
            ++ +++ETM KA+WD + E + Q   +Y R+I+L  E++D +  +   P   ++EI E +
Sbjct: 24   LEGRVKETMHKAYWDALREELSQDPPDYSRLIKLFEEIKDILLSLLLGPNRLRQEINEVL 83

Query: 778  DPEILSQVLSSGSLDIDYLGRILEFALTTLQKLSAPANDDDMKANHQRLLKELAEICQIR 837
            D ++L Q    G+LDI    ++ +F +  L+KL APA D+++K   +++           
Sbjct: 84   DLDLLRQQAEHGALDI---VKLAKFIINILKKLCAPARDEEVKKLKEKI----------- 129

Query: 838  DESNYSHVNAMIKGLRFVLEQIRALQQEIIRARMRMMEPFLKGPAGLEYLRKGFADRYGP 897
              S    V+ +++GLR + E +  ++ ++   ++R + P L   + +EY RK F +    
Sbjct: 130  --SESQSVDDIVEGLRGIFEVLELMKLDMANFQIRSLRPLLIENS-VEYERKKFQELL-- 184

Query: 898  PSDAHTSLPVTLQWLSSILTCKDYEWEEHKSSLSALVSQETSSGLPLPSTTLRTGGSFRV 957
                  SLP T +WL    + ++ EW EH                               
Sbjct: 185  -EKGPNSLPSTKRWLKRAASKEEREWSEHAQLS--------------------------- 216

Query: 958  KTSGNQITSSHTSDVSNITVNQQPECKGERLDLMVRLGLLKLVSAITGITEEALPETLML 1017
                                    E  GE   L++  G LKL   I  + +E  PETL+ 
Sbjct: 217  ------------------------ETDGESPKLVLIRGYLKL--LIQDLMDEEFPETLLF 250

Query: 1018 NLPRLRAVQAQIQKMIVIS 1036
            +  RL+ ++ Q+Q++I+++
Sbjct: 251  DRARLQELREQLQQLILLA 269

This family consists of several eukaryotic T-complex protein 11 (Tcp11) related sequences. Tcp11 is only expressed in fertile adult mammalian testes and is thought to be important in sperm function and fertility. The family also contains the yeast Sok1 protein which is known to suppress cyclic AMP-dependent protein kinase mutants. Length = 431
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|227606 COG5281, COG5281, Phage-related minor tail protein [Function unknown] Back     alignment and domain information
>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1038
PF05794 441 Tcp11: T-complex protein 11; InterPro: IPR008862 T 100.0
KOG1981 513 consensus SOK1 kinase belonging to the STE20/SPS1/ 100.0
KOG1981 513 consensus SOK1 kinase belonging to the STE20/SPS1/ 94.81
PTZ001212084 MAEBL; Provisional 82.28
>PF05794 Tcp11: T-complex protein 11; InterPro: IPR008862 This family consists of several eukaryotic T-complex protein 11 (Tcp11) related sequences Back     alignment and domain information 
Probab=100.00  E-value=6.8e-59  Score=531.42  Aligned_cols=275  Identities=29%  Similarity=0.521  Sum_probs=241.6

Q ss_pred             hhhhhhhcCCCcccccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhccCCcchHHH
Q 001643          693 VIINEYVHNQHYAAFDIFTVNNEKPNIIKAKIRETMEKAFWDGIAESVKQGEHNYDRIIQLVREVRDEICGMAPQSWKEE  772 (1038)
Q Consensus       693 qLvHEIl~Dp~f~f~~~~d~~~~~e~sL~~rVKetM~kAFWD~lreeL~~~pPdysrlv~Ll~EIRD~LlsLLP~slr~e  772 (1038)
                      +|+|||+|||+|+|+++    ++++++++++||++|++||||.|+++|..+||+|++++.|++||||+|++|||++++++
T Consensus         1 qL~Hei~~d~~~~~~~~----~~~~~~~~~~vk~~~~~afWd~l~~el~~~~~~~~~~~~Ll~~ike~L~~ll~~~~~~~   76 (441)
T PF05794_consen    1 QLRHEIAFDPDFQFRPN----DPPEDSLEGRVKETMHKAFWDALREELEQDPPDYSRLPQLLEEIKEILLSLLPSRLRQE   76 (441)
T ss_pred             CcchhhhcCcccccCCC----CCCccchHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            68999999999999643    46789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCChhHHHhhhhcCCcChHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHH
Q 001643          773 ITEAIDPEILSQVLSSGSLDIDYLGRILEFALTTLQKLSAPANDDDMKANHQRLLKELAEICQIRDESNYSHVNAMIKGL  852 (1038)
Q Consensus       773 I~E~LD~eLL~QQle~GslDi~~L~kf~~fi~~lLkkLCAPaRDeeVk~l~e~llkeL~e~~e~~D~~~~~~~~~iVdgL  852 (1038)
                      |.++||+++|.||+++|+||+.   +|++|++++|++|||||||++|++|+++    +.++      ....++.++|++|
T Consensus        77 I~e~LD~~li~Qq~~~g~~D~~---~l~~~i~~~l~~~CAP~RD~~v~~l~~~----~~~~------~~~~~~~~~V~~l  143 (441)
T PF05794_consen   77 IEEVLDLELIRQQLEHGVLDLV---KLARFIISLLKKLCAPMRDEEVKALVEK----IEEG------CTESSATDIVDGL  143 (441)
T ss_pred             HHHHCChHHHHHHHhcCCcCHH---HHHHHHHHHHHHhCCCCCcHHHHHHHHH----HHhc------cccCCHHHHHHHH
Confidence            9999999999999999999999   7779999999999999999999999643    3332      3446788999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhchhhhcCCcchHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHhhhchhhhhhhhhhhhhc
Q 001643          853 RFVLEQIRALQQEIIRARMRMMEPFLKGPAGLEYLRKGFADRYGPPSDAHTSLPVTLQWLSSILTCKDYEWEEHKSSLSA  932 (1038)
Q Consensus       853 R~LFeiLElMKlDmAN~~Ir~lRPlL~~~~aVeYERk~F~e~l~~~~~~~~~L~~T~~WL~sa~~~l~~E~~e~~~sls~  932 (1038)
                      ++||++||+||+|||||+|+++||+|++ ++|+|||++|+++++.   ++++|+.|++||+.++..+..++..+      
T Consensus       144 r~if~~le~MklD~AN~~i~~~rp~L~~-~sv~yEr~~F~~~l~~---~~~~l~~T~~Wl~~~~~~~~~~~~~~------  213 (441)
T PF05794_consen  144 RFIFEILELMKLDMANFQIRSLRPQLIE-HSVEYERKKFQERLEK---GPNSLPRTKAWLKRARSELESEASSR------  213 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh---CcCChHHHHHHHHHHHHHHhcccccc------
Confidence            9999999999999999999999999999 8999999999999977   79999999999999998754322111      


Q ss_pred             ccccccCCCCCCCCcccccCCccccccCCCCCCCCCCCCCcccccCCCCccccchHHHHHHHHHHHhhcCCCCCCCCCCC
Q 001643          933 LVSQETSSGLPLPSTTLRTGGSFRVKTSGNQITSSHTSDVSNITVNQQPECKGERLDLMVRLGLLKLVSAITGITEEALP 1012 (1038)
Q Consensus       933 ~pe~v~~~~~~~p~~~lrtGg~~~~~~~g~~~~~s~~s~~Pt~~~~~lp~~~ge~~~~i~r~gLl~LLs~~~~l~~e~~P 1012 (1038)
                      .           +                               ....+.+.+..+..+++.||++|+.|..  ...+||
T Consensus       214 ~-----------~-------------------------------~~~~~~~~~~~~~~~~~~~~~~Ll~~~~--~~~~~P  249 (441)
T PF05794_consen  214 A-----------P-------------------------------ESGLPPTTSPSPDRVLRRGLLDLLSWPN--SPEEFP  249 (441)
T ss_pred             C-----------c-------------------------------ccccCCCCccCHHHHHHHHHHHHhcCcc--ccccCC
Confidence            0           0                               0011222333488999999999988865  689999


Q ss_pred             hhhcCCHHHHHHHHHHHhhhhhcccC
Q 001643         1013 ETLMLNLPRLRAVQAQIQKMIVISNR 1038 (1038)
Q Consensus      1013 ETL~LD~~RL~~lqaq~qqIiviAt~ 1038 (1038)
                      |||.||..||..+|+++++|+|++++
T Consensus       250 ETl~lD~~RL~~l~~~~~~l~~~a~~  275 (441)
T PF05794_consen  250 ETLELDQDRLRELRAEFQRLIVLASC  275 (441)
T ss_pred             chhcccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999874

Tcp11 is only expressed in fertile adult mammalian testes and is thought to be important in sperm function and fertility. The family also contains the Saccharomyces cerevisiae Sok1 protein which is known to suppress cyclic AMP-dependent protein kinase mutants [].
>KOG1981 consensus SOK1 kinase belonging to the STE20/SPS1/GC kinase family [Signal transduction mechanisms] Back     alignment and domain information
>KOG1981 consensus SOK1 kinase belonging to the STE20/SPS1/GC kinase family [Signal transduction mechanisms] Back     alignment and domain information
>PTZ00121 MAEBL; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1038
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 2e-07
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 6e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 74.5 bits (182), Expect = 1e-13
 Identities = 101/626 (16%), Positives = 202/626 (32%), Gaps = 149/626 (23%)

Query: 18  EFSVSDEKAAETTSFSSATATRV----PRRLRKRLLAE--CSRSPCTVEE-IEAKLRHAD 70
            F   D +    +  S      +            L     S+    V++ +E  L    
Sbjct: 32  NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL---- 87

Query: 71  LRRQQFYEKLSSKARPKPRSPPRSSSNEEDLGQRLEAKLQAAQQKRLSILAKAQ-KRLAR 129
              +  Y+ L S  + + R P   +    +   RL    Q        + AK    RL  
Sbjct: 88  ---RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ--------VFAKYNVSRLQP 136

Query: 130 LDELRQAAKTGVEMRFEKE---REMLGS-K------V--ESRVQKAEANRMLILKAYSQR 177
             +LRQA     E+R  K      +LGS K      V    +VQ     ++  L   +  
Sbjct: 137 YLKLRQALL---ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 178 RDKLKERSSQSLLRRMTRESKYKERVRAAIHQK-RLAAEKKRLGLLEAEKKKARA----- 231
             +      Q LL ++  +  +  R   + + K R+ + +  L  L   K          
Sbjct: 194 SPETVLEMLQKLLYQI--DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 232 ---------------RMLQVRR---VAKFVS-----HQREVERRKM--REQLEDRLQRAK 266
                          ++L   R   V  F+S     H            ++++  L +  
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 267 RQRAEYLRQRARLHTVRINWNRMDKQADVLSRKLARCWRQFLKHRRSTLE--LARSYDAL 324
             R + L +      +  N  R+   A+ +   LA  W  +       L   +  S + L
Sbjct: 312 DCRPQDLPREV----LTTNPRRLSIIAESIRDGLAT-WDNWKHVNCDKLTTIIESSLNVL 366

Query: 325 KINEMSVKSLPFEQLALLIES----TATL---------QTVKTLLERLESRFKIFRAVDA 371
           +  E   + + F++L++   S    T  L           V  ++ +L     + +    
Sbjct: 367 EPAEY--RKM-FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK--QP 421

Query: 372 ASNHSSCLDSIDHLLKRVASPKKRPTPRTPLRSREAKKVNSSREAGRTPAKLSRYPVRVV 431
             +  S + SI +L  +V    +    R+ +      K   S      P  L +Y     
Sbjct: 422 KESTIS-IPSI-YLELKVKLENEYALHRSIVDHYNIPKTFDSD--DLIPPYLDQY----- 472

Query: 432 LCAYMILG-HPDAVFSGQGE-----REIALAKSAEEFIGQFELLIKVILEG-PIQSSDEE 484
             ++  +G H   +     E     R + L      F+ Q     K+  +     +S   
Sbjct: 473 FYSH--IGHHLKNI--EHPERMTLFRMVFLDFR---FLEQ-----KIRHDSTAWNASGSI 520

Query: 485 SDSLP-----KRWTIRSQLAAFDKAWCSYLNCFVMWKVKDAKSLEDDLVRA--ACQLELS 537
            ++L      K + I      +++   + L+ F+         +E++L+ +     L ++
Sbjct: 521 LNTLQQLKFYKPY-ICDNDPKYERLVNAILD-FLP-------KIEENLICSKYTDLLRIA 571

Query: 538 MIHKCKMTAEGDNGALTHD-LKAIQK 562
           ++         ++ A+  +  K +Q+
Sbjct: 572 LMA--------EDEAIFEEAHKQVQR 589
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00