Citrus Sinensis ID: 001645
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1038 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FNG8 | 1030 | Putative pentatricopeptid | yes | no | 0.963 | 0.970 | 0.556 | 0.0 | |
| Q9SZ52 | 1112 | Pentatricopeptide repeat- | no | no | 0.745 | 0.696 | 0.230 | 2e-54 | |
| Q9M907 | 871 | Pentatricopeptide repeat- | no | no | 0.746 | 0.889 | 0.215 | 1e-45 | |
| Q9LVQ5 | 1096 | Pentatricopeptide repeat- | no | no | 0.705 | 0.667 | 0.217 | 5e-45 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.659 | 0.748 | 0.225 | 1e-41 | |
| Q9M9X9 | 987 | Pentatricopeptide repeat- | no | no | 0.547 | 0.575 | 0.236 | 4e-41 | |
| Q9LVD3 | 971 | Pentatricopeptide repeat- | no | no | 0.693 | 0.741 | 0.237 | 1e-37 | |
| Q5G1S8 | 1440 | Pentatricopeptide repeat- | no | no | 0.798 | 0.575 | 0.205 | 1e-37 | |
| Q940A6 | 838 | Pentatricopeptide repeat- | no | no | 0.571 | 0.707 | 0.234 | 2e-37 | |
| Q9FIT7 | 974 | Pentatricopeptide repeat- | no | no | 0.803 | 0.856 | 0.223 | 1e-36 |
| >sp|Q9FNG8|PP366_ARATH Putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial OS=Arabidopsis thaliana GN=At5g06400 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 1121 bits (2899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/1023 (55%), Positives = 736/1023 (71%), Gaps = 23/1023 (2%)
Query: 1 MRNLARFQSVCSNSVHKRPQSHLYKLQISRHSSSSKSSKPPQFNKPEKLQTNTYA--SLF 58
M+ L RF+S + +R Q + S S SSKS+K + K+Q A SLF
Sbjct: 1 MKALFRFKSCLFDPTRRRNQL----VSFSGFSKSSKSNKTRETTTTSKIQAEATAITSLF 56
Query: 59 NEITEILGADNVTTDETPSGFS-VSKRAPLELIEVSDRFGCSTHAVC--ENAEEENLSVL 115
NEITEILG D V DET S VS + VS G +A +E+ VL
Sbjct: 57 NEITEILGTDVVKLDETTRLRSHVSGAVSDNGVSVSCTEGVRQNAAMGFSGEDEKAQKVL 116
Query: 116 EDTRVGNLGGIDVSPIVHEITEIVRAGNDVVSMEERLENLSFRFEPEVVDKVLKRCFKVP 175
+ +D SP+VHEIT +VR + +VSME+RLE LSFRFEPE+V+ VLKRCFKVP
Sbjct: 117 HEE-------VDFSPVVHEITSVVRGDDVLVSMEDRLEKLSFRFEPEIVENVLKRCFKVP 169
Query: 176 HLALRFFNWVKLREGFCHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTI 235
HLA+RFFNWVK ++GF H YNTML+IAGEA+ L++++EL EME N C K+I+TWTI
Sbjct: 170 HLAMRFFNWVKQKDGFSHRVGIYNTMLSIAGEARNLDMVDELVSEMEKNGCDKDIRTWTI 229
Query: 236 LVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKE 295
L+S+YGKAK IGK LLVFEKMRK GFE DA AY +++RSLC AG+GD+ALEFYKEM +K
Sbjct: 230 LISVYGKAKKIGKGLLVFEKMRKSGFELDATAYNIMIRSLCIAGRGDLALEFYKEMMEKG 289
Query: 296 MVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREAL 355
+ L YK++++C AK VD V SIADDMVRI +I E DA+G +LKSFCVS +I+EAL
Sbjct: 290 ITFGLRTYKMLLDCIAKSEKVDVVQSIADDMVRICEISEHDAFGYLLKSFCVSGKIKEAL 349
Query: 356 EFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYL 415
E IR LK+KE+ +D +FE LVKGLC A R+ DALEIVDIM RR L D +YGIII GYL
Sbjct: 350 ELIRELKNKEMCLDAKYFEILVKGLCRANRMVDALEIVDIMKRRKLDDSNVYGIIISGYL 409
Query: 416 RKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSV 475
R+ND+SKAL QFE +K+SG P STYTE+MQHLFKL +++KGC L+NEM++ GI+PDSV
Sbjct: 410 RQNDVSKALEQFEVIKKSGRPPRVSTYTEIMQHLFKLKQFEKGCNLFNEMIENGIEPDSV 469
Query: 476 AVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNM 535
A+TA+VAGH+ Q+ ++EAWKVF ME+KGI+PT KSYS+F+KELCR SR +EI+K+ N M
Sbjct: 470 AITAVVAGHLGQNRVAEAWKVFSSMEEKGIKPTWKSYSIFVKELCRSSRYDEIIKIFNQM 529
Query: 536 QASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNV 595
ASKIVI D+IF WVIS MEK GE E + +K +Q + E SG A Q +
Sbjct: 530 HASKIVIRDDIFSWVISSMEKNGEKEKIHLIKEIQKRSNSYCDELNGSGK-AEFSQEEEL 588
Query: 596 ELDHN--EMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQYTP 653
D+N ++ +++ + + + K D+ EICR+LSSS DW QE+LEK VQ+TP
Sbjct: 589 VDDYNCPQLVQQSALPPALSAVDK----MDVQEICRVLSSSRDWERTQEALEKSTVQFTP 644
Query: 654 ELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEM 713
ELV+E+L ++++ G+A L FFSWVGK+ Y H+S YNM+IK AG GKDFK MR+LFYEM
Sbjct: 645 ELVVEVLRHAKIQGNAVLRFFSWVGKRNGYKHNSEAYNMSIKVAGCGKDFKQMRSLFYEM 704
Query: 714 RRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGR 773
RR G LIT DTW IM+MQYGR GLT +A+R F++MK G PS ST+K LI L +KGR
Sbjct: 705 RRQGCLITQDTWAIMIMQYGRTGLTNIAIRTFKEMKDMGLIPSSSTFKCLITVLCEKKGR 764
Query: 774 KVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSL 833
V+ A + F+EM+ +G +PD+ELV+ YL CLCEVG + AKSC+D L K+GF V ++YS+
Sbjct: 765 NVEEATRTFREMIRSGFVPDRELVQDYLGCLCEVGNTKDAKSCLDSLGKIGFPVTVAYSI 824
Query: 834 YIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAG 893
YIRALCR G+LEEAL+ L + ERS LD++ +GS++HGL+QRG +++AL KV +MK+ G
Sbjct: 825 YIRALCRIGKLEEALSELASFEGERSLLDQYTYGSIVHGLLQRGDLQKALDKVNSMKEIG 884
Query: 894 IYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAW 953
P VHVYTS +V+FF+EKQ+ + LE ++M E CEP+VVTYTA+I G+ +LGKV EAW
Sbjct: 885 TKPGVHVYTSLIVYFFKEKQLEKVLETCQKMEGESCEPSVVTYTAMICGYMSLGKVEEAW 944
Query: 954 DVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRTIFFGL 1013
+ F M+ +G PDF+TYS FI CLC+ KSE+AL+LLSEM + GI PS INFRT+F+GL
Sbjct: 945 NAFRNMEERGTSPDFKTYSKFINCLCQACKSEDALKLLSEMLDKGIAPSTINFRTVFYGL 1004
Query: 1014 NRE 1016
NRE
Sbjct: 1005 NRE 1007
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (546), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 202/877 (23%), Positives = 373/877 (42%), Gaps = 103/877 (11%)
Query: 189 EGFCHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGK 248
EGF + +TY++++ G+ ++++ + L +EME N+ T+TI + + G+A I +
Sbjct: 217 EGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINE 276
Query: 249 ALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMN 308
A + ++M G PD V Y VL+ +LC A K D A E +++M D Y +++
Sbjct: 277 AYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLD 336
Query: 309 CAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISM 368
+ D+D+V +M + +P+ + ++ + C + EA + + ++ + I
Sbjct: 337 RFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILP 396
Query: 369 DRDHFETLVKGLCIAGRISDALEIVDIMMRRNL-VDGKIYGIIIGGYLRKNDLSKALVQF 427
+ + TL+ GL R+ DALE+ M + Y + I Y + D AL F
Sbjct: 397 NLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETF 456
Query: 428 ERM-----------------------------------KESGYLPMASTYTELMQHLFKL 452
E+M K+ G +P + TY +M+ K+
Sbjct: 457 EKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKV 516
Query: 453 NEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSY 512
E + +L +EM++ G +PD + V +++ + D + EAWK+F M++ ++PT +Y
Sbjct: 517 GEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTY 576
Query: 513 SVFIKELCRVSRTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKV--KRMQ 570
+ + L + + E +++ M F+ + C+ K E+ K+ K M
Sbjct: 577 NTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMD 636
Query: 571 GICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRM 630
C + N G N +++ H ++ L P D +C +
Sbjct: 637 MGCVPDV----FTYNTIIFGLVKN-----GQVKEAMCFFHQMKKLVYP----DFVTLCTL 683
Query: 631 LSSSTDWYHIQES-------LEKCAVQ----YTPELVLEILHNSEMHGSAALHFFSWVGK 679
L I+++ L CA Q + +L+ IL +E A+ F +
Sbjct: 684 LPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSIL--AEAGIDNAVSFSERLVA 741
Query: 680 QADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRN-GYLITPDTWTIMMMQYGRAGLT 738
+ I+ + + + R LF + ++ G T+ +++ A +
Sbjct: 742 NGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMI 801
Query: 739 EMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVE 798
E+A VF +K+ GC P +TY +L+ + G+ G K+D ++++EM
Sbjct: 802 EIAQDVFLQVKSTGCIPDVATYNFLLDAY-GKSG-KIDELFELYKEMSTHE--------- 850
Query: 799 TYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEER 858
CE +++++ I L +AG +++AL L ++ +R
Sbjct: 851 ------CEAN-------------------TITHNIVISGLVKAGNVDDALDLYYDLMSDR 885
Query: 859 S-KLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRA 917
+G LI GL + G++ EA E M G P +Y + F + + A
Sbjct: 886 DFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAA 945
Query: 918 LEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGC 977
+F+RM +EG P + TY+ L+ +G+V E F +K G PD Y++ I
Sbjct: 946 CALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIING 1005
Query: 978 LCKVGKSEEALELLSEM-TESGIVPSNINFRTIFFGL 1013
L K + EEAL L +EM T GI P + ++ L
Sbjct: 1006 LGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNL 1042
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Plays a role in the stabilization of the primary polycistronic transcript of the petL operon encoding subunits of the cytochrome b6-f complex. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 183/849 (21%), Positives = 353/849 (41%), Gaps = 74/849 (8%)
Query: 132 VHEITEIVRAGNDVVSMEERLENLSFRFEPEVVDKVLKRCFKVPHLALRFFNWVKLREGF 191
V++I ++ G S E L LSF+ +PE V VL+R K + A+ +F W + R
Sbjct: 36 VNDICNVLETGPWGPSAENTLSALSFKPQPEFVIGVLRR-LKDVNRAIEYFRWYERRTEL 94
Query: 192 CHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALL 251
H E+YN++L + + + L+++ EM + ++ T +V KA + +
Sbjct: 95 PHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYD 154
Query: 252 VFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAA 311
V + MRK+ F P AY L+ + D+ L +++M + + L+ ++ A
Sbjct: 155 VVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFA 214
Query: 312 KLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRD 371
K G VD+ LS+ D+M S + Y + SF ++ A +F +++ + D
Sbjct: 215 KEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEV 274
Query: 372 HFETLVKGLCIAGRISDALEIVDIMMR-RNLVDGKIYGIIIGGYLRKNDLSKALVQFERM 430
+ +++ LC A R+ +A+E+ + + + R + Y +I GY +A ER
Sbjct: 275 TYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQ 334
Query: 431 KESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNL 490
+ G +P Y ++ L K+ + + +++ EM K+ P+ ++ R L
Sbjct: 335 RAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEM-KKDAAPNLSTYNILIDMLCRAGKL 393
Query: 491 SEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASKIVIGDEI-FHW 549
A+++ M+ G+ P ++ ++ + LC+ + +E + M K+ DEI F
Sbjct: 394 DTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMD-YKVCTPDEITFCS 452
Query: 550 VISCMEKKGEMESVEKV--KRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTT 607
+I + K G ++ KV K + C+ N +H RK
Sbjct: 453 LIDGLGKVGRVDDAYKVYEKMLDSDCRT---------NSIVYTSLIKNFFNHG---RKED 500
Query: 608 VSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKC--------AVQYTPE----- 654
+ + + C DL ++L++ D EK A ++ P+
Sbjct: 501 GHKIYKDMINQNCSPDL----QLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYS 556
Query: 655 LVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMR 714
+++ L + F+S K+ + YN+ I + L EM+
Sbjct: 557 ILIHGLIKAGFANETYELFYSM--KEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMK 614
Query: 715 RNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRK 774
G+ T T+ ++ + + A +FE+ K+ + Y LI G+ GR
Sbjct: 615 TKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGF-GKVGR- 672
Query: 775 VDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLY 834
+D A I +E++ G P+ + LD
Sbjct: 673 IDEAYLILEELMQKGLTPNLYTWNSLLD-------------------------------- 700
Query: 835 IRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGI 894
AL +A E+ EAL +KE + ++ +G LI+GL + + +A + M++ G+
Sbjct: 701 --ALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGM 758
Query: 895 YPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWD 954
P+ YT+ + + + A +F+R + G P Y A+I+G +N + +A+
Sbjct: 759 KPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFS 818
Query: 955 VFYRMKIKG 963
+F + +G
Sbjct: 819 LFEETRRRG 827
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 183 bits (465), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 189/870 (21%), Positives = 339/870 (38%), Gaps = 138/870 (15%)
Query: 177 LALRFFNWVKLREGF--CHATETYNTMLTIAGEAKELELLEELEREMEINS--------- 225
LAL+F WV + G H + I A+ + + +E+ + S
Sbjct: 52 LALKFLKWVVKQPGLETDHIVQLVCITTHILVRARMYDPARHILKELSLMSGKSSFVFGA 111
Query: 226 -------CAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNA 278
C N + IL+ +Y + +I +L +F M YGF P ++ S+ +
Sbjct: 112 LMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKS 171
Query: 279 GKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAY 338
G+ F KEM ++++ D++ + I++N G + + M + P Y
Sbjct: 172 GEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTY 231
Query: 339 GCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMR 398
VL +C R + A+E + ++KSK + D + L+ LC + RI+
Sbjct: 232 NTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAK---------- 281
Query: 399 RNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKG 458
GYL D+ K ++ P TY L+ +
Sbjct: 282 --------------GYLLLRDMRKRMIH----------PNEVTYNTLINGFSNEGKVLIA 317
Query: 459 CELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKE 518
+L NEML G+ P+ V A++ GH+ + N EA K+F ME KG+ P+ SY V +
Sbjct: 318 SQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDG 377
Query: 519 LCRVSRTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQ 578
LC+ + + M+ + + +G + +I + K G ++
Sbjct: 378 LCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLD----------------- 420
Query: 579 EGEASGNDASR-GQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEI-CRM--LSSS 634
E N+ S+ G P++ T S L+ K + EI CR+ + S
Sbjct: 421 EAVVLLNEMSKDGIDPDI----------VTYSALINGFCKVGRFKTAKEIVCRIYRVGLS 470
Query: 635 TDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAI 694
+ + C + + I + G HF T+N+ +
Sbjct: 471 PNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHF---------------TFNVLV 515
Query: 695 KTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCN 754
+ + M +G L ++ ++ YG +G A VF++M G +
Sbjct: 516 TSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHH 575
Query: 755 PSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAK 814
P+ TY L+ KG LC+ G L+ A+
Sbjct: 576 PTFFTYGSLL------KG-------------------------------LCKGGHLREAE 598
Query: 815 SCMDVLRKVGFTV-PLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGL 873
+ L V V + Y+ + A+C++G L +A++L E+ + D + + SLI GL
Sbjct: 599 KFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGL 658
Query: 874 VQRGQIEEA-LAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPT 932
++G+ A L E + + P +YT FV F+ Q + E+M G P
Sbjct: 659 CRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPD 718
Query: 933 VVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLS 992
+VT A+I G++ +GK+ + D+ M + P+ TY++ + K + L
Sbjct: 719 IVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYR 778
Query: 993 EMTESGIVPSNINFRTIFFGLNREDNLYQI 1022
+ +GI+P + ++ G+ E N+ +I
Sbjct: 779 SIILNGILPDKLTCHSLVLGIC-ESNMLEI 807
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 177/785 (22%), Positives = 332/785 (42%), Gaps = 100/785 (12%)
Query: 198 YNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMR 257
YNT+L ++ ++++ EM + NI T+ +V+ Y K + +A K+
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245
Query: 258 KYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMN--CAAKLGD 315
+ G +PD Y L+ C D A + + EM K + Y +++ C A+ D
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRID 305
Query: 316 --VDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHF 373
+D + + DD P Y ++KS C S R EAL ++ ++ I + +
Sbjct: 306 EAMDLFVKMKDDEC----FPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTY 361
Query: 374 ETLVKGLCIAGRISDALEIVDIMMRRNLVDGKI-YGIIIGGYLRKNDLSKALVQFERMKE 432
L+ LC + A E++ M+ + L+ I Y +I GY ++ + A+ E M+
Sbjct: 362 TVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMES 421
Query: 433 SGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSE 492
P TY EL++ K N +K + N+ML+R + PD V +++ G R N
Sbjct: 422 RKLSPNTRTYNELIKGYCKSNVHK-AMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDS 480
Query: 493 AWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASKIVIGDEIFHWVIS 552
A+++ M D+G+ P + +Y+ I LC+ R E + ++++ + ++ +I
Sbjct: 481 AYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALID 540
Query: 553 CMEKKGEMESVE-KVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHL 611
K G+++ +++M L N + T + L
Sbjct: 541 GYCKAGKVDEAHLMLEKM---------------------------LSKNCLPNSLTFNAL 573
Query: 612 VEPLPKPYCEQDLHEICR--MLSSSTDWYHIQESLEKCAVQYTPE----LVLEILHNSEM 665
+ H +C L +T ++E + K +Q T L+ +L + +
Sbjct: 574 I------------HGLCADGKLKEAT---LLEEKMVKIGLQPTVSTDTILIHRLLKDGDF 618
Query: 666 -HGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPD- 723
H + G + D + TY I+T R ++ +MR NG ++PD
Sbjct: 619 DHAYSRFQQMLSSGTKPD----AHTYTTFIQTYCREGRLLDAEDMMAKMRENG--VSPDL 672
Query: 724 -TWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISL-----SGRKGRK--- 774
T++ ++ YG G T A V + M+ GC PS T+ LI L +KG +
Sbjct: 673 FTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPEL 732
Query: 775 --------VDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFT 826
D +++ ++MV P+ + E + +CEVG L++A+ D +++
Sbjct: 733 CAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGI 792
Query: 827 VP--LSYSLYIRALCRAGELEEALALLDEV-------KEERSKLDEFVFGSLIHGLVQRG 877
P L ++ + C+ + EA ++D++ + E K+ LI GL ++G
Sbjct: 793 SPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKV-------LICGLYKKG 845
Query: 878 QIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYT 937
+ E + + + Q G Y + + ++ V E+F M + GC+ + TY+
Sbjct: 846 EKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYS 905
Query: 938 ALIQG 942
LI+G
Sbjct: 906 LLIEG 910
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 157/663 (23%), Positives = 271/663 (40%), Gaps = 95/663 (14%)
Query: 402 VDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCEL 461
V G+ +++ + R S AL + R+K+ + P STY L+Q K + +
Sbjct: 198 VFGEFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLI 257
Query: 462 YNEMLKRGIQ--------------------------------PDSVAVTAMVAGHVRQDN 489
+ EM ++ PD+V T +++G
Sbjct: 258 HREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASL 317
Query: 490 LSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASKIVIGDEIFHW 549
EA M P +YS + + +VLN M +IF+
Sbjct: 318 FEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNS 377
Query: 550 VISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVS 609
++ G+ K+ + C H P N+ + ++ +
Sbjct: 378 LVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVY-----------NILIGSICGDKDSLNC 426
Query: 610 HLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQ-ESLEKC---AVQYTPELVLEILHNSEM 665
L++ K Y E ML++ I S +C A +Y E ++ EM
Sbjct: 427 DLLDLAEKAYSE--------MLAAGVVLNKINVSSFTRCLCSAGKY--EKAFSVIR--EM 474
Query: 666 HGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTW 725
G + S K +Y +++ +A LF EM+R G + T+
Sbjct: 475 IGQGFIPDTSTYSKVLNYLCNASKMELAFL-------------LFEEMKRGGLVADVYTY 521
Query: 726 TIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEM 785
TIM+ + +AGL E A + F +M+ GC P+ TY LI + K +KV +A ++F+ M
Sbjct: 522 TIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAY--LKAKKVSYANELFETM 579
Query: 786 VNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGF-TVP---------------- 828
++ G +P+ +D C+ G Q+ K+C R G VP
Sbjct: 580 LSEGCLPNIVTYSALIDGHCKAG--QVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERP 637
Query: 829 --LSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKV 886
++Y + C++ +EEA LLD + E + ++ V+ +LI GL + G+++EA
Sbjct: 638 NVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 697
Query: 887 ETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANL 946
M + G T++ Y+S + +F+ K+ A ++ +M + C P VV YT +I G +
Sbjct: 698 TEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKV 757
Query: 947 GKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINF 1006
GK EA+ + M+ KG P+ TY+ I +GK E LELL M G+ P+ + +
Sbjct: 758 GKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTY 817
Query: 1007 RTI 1009
R +
Sbjct: 818 RVL 820
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVD3|PP434_ARATH Pentatricopeptide repeat-containing protein At5g57250, mitochondrial OS=Arabidopsis thaliana GN=At5g57250 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 188/790 (23%), Positives = 334/790 (42%), Gaps = 70/790 (8%)
Query: 248 KALLVFEK-MRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEM--VLDLSLYK 304
K LL+ +R +G P ++ + L+ G+ D A+E + M K + D +
Sbjct: 116 KGLLILRDCLRNHGAFPSSLTFCSLIYRFVEKGEMDNAIEVLEMMTNKNVNYPFDNFVCS 175
Query: 305 IVMNCAAKLGDVDAVLSIADDMVRIS-QIPERDAYGCVLKSFCVSMRIREALEFIRNLKS 363
V++ K+G + L + V +P Y ++ + C ++ E + +R L+
Sbjct: 176 AVISGFCKIGKPELALGFFESAVDSGVLVPNLVTYTTLVSALCQLGKVDEVRDLVRRLED 235
Query: 364 KEISMDRDHFETLVKGLCIAGRISDAL----EIVDIMMRRNLVDGKIYGIIIGGYLRKND 419
+ D + + G G + DAL E+V+ M R++V Y I+I G ++ +
Sbjct: 236 EGFEFDCVFYSNWIHGYFKGGALVDALMQDREMVEKGMNRDVVS---YSILIDGLSKEGN 292
Query: 420 LSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTA 479
+ +AL +M + G P TYT +++ L K+ + ++ L+N +L GI+ D
Sbjct: 293 VEEALGLLGKMIKEGVEPNLITYTAIIRGLCKMGKLEEAFVLFNRILSVGIEVDEFLYVT 352
Query: 480 MVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASK 539
++ G R+ NL+ A+ + ME +GI+P+ +Y+ I LC R +E +V SK
Sbjct: 353 LIDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNTVINGLCMAGRVSEADEV------SK 406
Query: 540 IVIGDEI-FHWVISCMEKKGEMESVEKVKR-------------MQGICKHHPQEGEASGN 585
V+GD I + ++ K +++V +++R + K G
Sbjct: 407 GVVGDVITYSTLLDSYIKVQNIDAVLEIRRRFLEAKIPMDLVMCNILLKAFLLMGAYGEA 466
Query: 586 DASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQ-DLHEICRMLSSSTDWYHIQESL 644
DA P ++L + T + K YC+ + E M + +++S
Sbjct: 467 DALYRAMPEMDLTPDTATYATMI--------KGYCKTGQIEEALEMFN------ELRKSS 512
Query: 645 EKCAVQYTPELVLEILHNSEMHGSAALHFFS-WVGKQADYSHSSATYNMAIKTAGRGKDF 703
AV Y +++ L M +A W H+S T +I G K
Sbjct: 513 VSAAVCYNR--IIDALCKKGMLDTATEVLIELWEKGLYLDIHTSRTLLHSIHANGGDKG- 569
Query: 704 KHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCN---PSGSTY 760
+ L Y + + + ++ + G E A+ V+ M+ G PS +
Sbjct: 570 --ILGLVYGLEQLNSDVCLGMLNDAILLLCKRGSFEAAIEVYMIMRRKGLTVTFPS-TIL 626
Query: 761 KYLIISLSGRKGRKVDHAIKIFQEMVNAGH--IPDKELVE--TYLDCLCEVGMLQLAKSC 816
K L+ +L R +D + + VNAG + ++++ ++ LC+ G L A +
Sbjct: 627 KTLVDNL-----RSLDAYLLV----VNAGETTLSSMDVIDYTIIINGLCKEGFLVKALNL 677
Query: 817 MDVLRKVGFTV-PLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQ 875
+ G T+ ++Y+ I LC+ G L EAL L D ++ E +G LI L +
Sbjct: 678 CSFAKSRGVTLNTITYNSLINGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCK 737
Query: 876 RGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVT 935
G +A +++M G+ P + +Y S V + + Q A+ + R P T
Sbjct: 738 EGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFT 797
Query: 936 YTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMT 995
+++I+G+ G + EA VF K K DF + I C G+ EEA LL EM
Sbjct: 798 VSSMIKGYCKKGDMEEALSVFTEFKDKNISADFFGFLFLIKGFCTKGRMEEARGLLREML 857
Query: 996 ESGIVPSNIN 1005
S V IN
Sbjct: 858 VSESVVKLIN 867
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 176/857 (20%), Positives = 357/857 (41%), Gaps = 28/857 (3%)
Query: 178 ALRFFNWVKLREGFCHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILV 237
AL F W+ LR +L + G + L E+ E + ++ + ++
Sbjct: 174 ALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQESLAVEIFTRAE-PTVGDRVQVYNAMM 232
Query: 238 SLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAG--KGDIALEFYKEMAQKE 295
+Y ++ KA + + MR+ G PD +++ L+ + +G ++A+E +
Sbjct: 233 GVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSG 292
Query: 296 MVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREAL 355
+ D Y +++ ++ ++D + + +DM P+ Y ++ + EA
Sbjct: 293 LRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAE 352
Query: 356 EFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNL-VDGKIYGIIIGGY 414
L+ K D + +L+ E+ M + D Y II Y
Sbjct: 353 RLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMY 412
Query: 415 LRKNDLSKALVQFERMKE-SGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPD 473
++ L AL ++ MK SG P A TYT L+ L K N + L +EML GI+P
Sbjct: 413 GKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPT 472
Query: 474 SVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLN 533
+A++ G+ + EA F CM G +P +YSV + L R + T + +
Sbjct: 473 LQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYR 532
Query: 534 NMQASKIVIGDEIFHWVISCMEKKGEMESVEK-VKRMQGICKHHPQEGEASGNDASRGQG 592
+M + ++ +I + K+ + ++K ++ M+ +C +P E + +G
Sbjct: 533 DMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEELCGMNPLE-----ISSVLVKG 587
Query: 593 PNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSS---TDWYHIQESLEKCAV 649
+L +++ T + +E L I SSS ++ + + E L++ A
Sbjct: 588 ECFDLAARQLKVAITNGYELE-------NDTLLSILGSYSSSGRHSEAFELLEFLKEHA- 639
Query: 650 QYTPELVLE---ILHNSEMHGSAAL-HFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKH 705
+ L+ E +LH + SAAL +F+ SS Y + + +
Sbjct: 640 SGSKRLITEALIVLHCKVNNLSAALDEYFADPCVHGWCFGSSTMYETLLHCCVANEHYAE 699
Query: 706 MRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLII 765
+F ++R +G + M++ Y + G E A +V + G + + S II
Sbjct: 700 ASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSPMYTDII 759
Query: 766 SLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGF 825
G++ + A + + +G PD + + + + G + A++ + + + G
Sbjct: 760 EAYGKQ-KLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGP 818
Query: 826 TVPL-SYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALA 884
+ + S ++ + ALC G LEE +++E+++ K+ + ++ + G I E
Sbjct: 819 SPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKK 878
Query: 885 KVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFA 944
+MK AG PT+ +Y + + K+V A + M + + + + ++++ +
Sbjct: 879 IYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYT 938
Query: 945 NLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNI 1004
+ + V+ R+K G PD TY+ I C+ + EE L+ +M G+ P
Sbjct: 939 AIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLD 998
Query: 1005 NFRTIFFGLNREDNLYQ 1021
++++ ++ L Q
Sbjct: 999 TYKSLISAFGKQKCLEQ 1015
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 150/640 (23%), Positives = 269/640 (42%), Gaps = 47/640 (7%)
Query: 389 ALEIVDIMMRRNLVDGKIY-GIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQ 447
AL++ ++ + + K I++ +R N+ K F+ + + G P +T +
Sbjct: 223 ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK-GVSPDVYLFTTAIN 281
Query: 448 HLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRP 507
K + ++ +L+++M + G+ P+ V ++ G EA+ + M ++G+ P
Sbjct: 282 AFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEP 341
Query: 508 TRKSYSVFIKELCRVSRTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKVK 567
T +YS+ +K L R R + VL M +++ +I + G + ++K
Sbjct: 342 TLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIK 401
Query: 568 RMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEI 627
+ + ++ N +G N + D+ E K
Sbjct: 402 DL--MVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLK---------------------- 437
Query: 628 CRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSS 687
MLS +++ + +T + L H + +AL F VG+ + S
Sbjct: 438 -EMLSIG---FNVNQG------SFTSVICLLCSH---LMFDSALRF---VGEMLLRNMSP 481
Query: 688 ATYNMAIKTAGRGKDFKHMR--NLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVF 745
+ +G K KH + L+++ G+++ T ++ AG + A R+
Sbjct: 482 GGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQ 541
Query: 746 EDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLC 805
+++ GC +Y LI G+K K+D A EMV G PD + L
Sbjct: 542 KEILGRGCVMDRVSYNTLISGCCGKK--KLDEAFMFLDEMVKRGLKPDNYTYSILICGLF 599
Query: 806 EVGMLQLAKSCMDVLRKVGFTVPL-SYSLYIRALCRAGELEEALALLDEVKEERSKLDEF 864
+ ++ A D ++ G + +YS+ I C+A EE DE+ + + +
Sbjct: 600 NMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTV 659
Query: 865 VFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERM 924
V+ LI + G++ AL E MK GI P YTS + +V A +FE M
Sbjct: 660 VYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEM 719
Query: 925 RQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKS 984
R EG EP V YTALI G+ LG++ + + M K P+ TY++ IG + G
Sbjct: 720 RMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNV 779
Query: 985 EEALELLSEMTESGIVPSNINFRTIFFGLNREDNLYQITK 1024
EA LL+EM E GIVP +I ++ +G ++ + + K
Sbjct: 780 TEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFK 819
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 204/912 (22%), Positives = 369/912 (40%), Gaps = 78/912 (8%)
Query: 154 NLSFRFEPEVVDKVLK-RCFKVPHLALRFFNWVKLREGFCHATETYNTM-LTIAGEAKEL 211
NLS PEVV VL+ + P L FFNWV ++ ++++ + L +
Sbjct: 55 NLSIEINPEVVLSVLRSKRVDDPSKLLSFFNWVDSQKVTEQKLDSFSFLALDLCNFGSFE 114
Query: 212 ELLEELEREMEIN-----------SCAKNIK-------TWTILVSLYGKAKLIGKALLVF 253
+ L +ER +E N C++ + IL Y I +A+ VF
Sbjct: 115 KALSVVERMIERNWPVAEVWSSIVRCSQEFVGKSDDGVLFGILFDGYIAKGYIEEAVFVF 174
Query: 254 EKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYK--IVMNCAA 311
P KVL+ +L + D+ + YK M ++ +V D+ Y I+ +C A
Sbjct: 175 SSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRA 234
Query: 312 ---KLG----------------DVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIR 352
+LG +VD L + + M+ +P + Y ++ C R+
Sbjct: 235 GNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLE 294
Query: 353 EALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALE-IVDIMMRRNL-VDGKIYGII 410
+A + + S +S+D + L+ GL + GR +DA + +V M+ + + +Y
Sbjct: 295 DAKSLLVEMDSLGVSLDNHTYSLLIDGL-LKGRNADAAKGLVHEMVSHGINIKPYMYDCC 353
Query: 411 IGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGI 470
I ++ + KA F+ M SG +P A Y L++ + ++G EL EM KR I
Sbjct: 354 ICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNI 413
Query: 471 QPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILK 530
+V G +L A+ + K M G RP Y+ IK + SR + ++
Sbjct: 414 VISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMR 473
Query: 531 VLNNMQASKIVIGDEIFHWVISCMEKKGEMES-----VEKVKRMQGICKHHPQEGEASGN 585
VL M+ I ++ +I + K M+ VE V+ G+ + G
Sbjct: 474 VLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVE--NGLKPNAFTYGAFISG 531
Query: 586 DASRGQGPNVELDHNEMERKTTVSH--LVEPLPKPYCEQ-DLHEICRMLSSSTDWYHIQE 642
+ + + EM + + L L YC++ + E C S D +
Sbjct: 532 YIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVD-----Q 586
Query: 643 SLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKD 702
+ A YT +++ L ++ A F GK + +Y + I + +
Sbjct: 587 GILGDAKTYT--VLMNGLFKNDKVDDAEEIFREMRGK--GIAPDVFSYGVLINGFSKLGN 642
Query: 703 FKHMRNLFYEMRRNGYLITPDT--WTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTY 760
+ ++F EM G +TP+ + +++ + R+G E A + ++M G +P+ TY
Sbjct: 643 MQKASSIFDEMVEEG--LTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTY 700
Query: 761 KYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVL 820
+I K + A ++F EM G +PD + T +D C + ++ A +
Sbjct: 701 CTIIDGYC--KSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTN 758
Query: 821 RKVGFTVPLSYSLYIRALCRAGELE---EALA-LLDEVKEERSKLDEFVFGSLIHGLVQR 876
+K + ++ I + + G+ E E L L+D + K ++ + +I L +
Sbjct: 759 KKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKE 818
Query: 877 GQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTY 936
G +E A M+ A + PTV YTS + + + + +F+ G EP + Y
Sbjct: 819 GNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMY 878
Query: 937 TALIQGFANLGKVAEAWDVFYRMKIKGPFPD-----FRTYSMFIGCLCKVGKSEEALELL 991
+ +I F G +A + +M K D T + KVG+ E A +++
Sbjct: 879 SVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVM 938
Query: 992 SEMTESGIVPSN 1003
M +P +
Sbjct: 939 ENMVRLQYIPDS 950
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1038 | ||||||
| 225439358 | 1048 | PREDICTED: putative pentatricopeptide re | 0.978 | 0.969 | 0.624 | 0.0 | |
| 224107773 | 1048 | predicted protein [Populus trichocarpa] | 0.931 | 0.922 | 0.640 | 0.0 | |
| 224088126 | 1048 | predicted protein [Populus trichocarpa] | 0.931 | 0.922 | 0.637 | 0.0 | |
| 255566203 | 1072 | pentatricopeptide repeat-containing prot | 0.973 | 0.942 | 0.595 | 0.0 | |
| 356498649 | 1034 | PREDICTED: putative pentatricopeptide re | 0.972 | 0.975 | 0.566 | 0.0 | |
| 297806669 | 1029 | pentatricopeptide repeat-containing prot | 0.922 | 0.931 | 0.570 | 0.0 | |
| 15240032 | 1030 | pentatricopeptide repeat-containing prot | 0.963 | 0.970 | 0.556 | 0.0 | |
| 449437886 | 1037 | PREDICTED: putative pentatricopeptide re | 0.967 | 0.968 | 0.548 | 0.0 | |
| 115488482 | 1117 | Os12g0456100 [Oryza sativa Japonica Grou | 0.853 | 0.793 | 0.429 | 0.0 | |
| 125536538 | 1117 | hypothetical protein OsI_38244 [Oryza sa | 0.853 | 0.793 | 0.428 | 0.0 |
| >gi|225439358|ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1316 bits (3406), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 641/1026 (62%), Positives = 794/1026 (77%), Gaps = 10/1026 (0%)
Query: 1 MRNLARFQSVCSNSVHKRPQSHLYKLQISRHSSSSKSSK-PPQFNKPEKLQT----NTYA 55
MR L+R S+ +S + K Q SS SK SK P N K QT +
Sbjct: 1 MRYLSRLGSLKPSSTDNLFYLPIRKSQSCLLSSRSKLSKLHPSKNDHNKSQTESEDQSVG 60
Query: 56 SLFNEITEILGADNVTTDETPSGFSVSKRAPLELIEVSDRFGCSTHAVCENAEEE----- 110
SLFNEI EILGA+ VT P+GFS K L + E++ + T VC AE+
Sbjct: 61 SLFNEIAEILGAETVTVGRNPAGFSAFKGTQLSVGEITAEYRSCTQGVCGIAEDNAREMV 120
Query: 111 NLSVLEDTRVGNLGGIDVSPIVHEITEIVRAGNDVVSMEERLENLSFRFEPEVVDKVLKR 170
+LSVLEDT+ + GG DVSP+V EIT+IVRA SMEE+LE F F+ EVV+KVLKR
Sbjct: 121 DLSVLEDTQTSHSGGNDVSPMVDEITKIVRADIGTGSMEEKLEKSGFVFDSEVVEKVLKR 180
Query: 171 CFKVPHLALRFFNWVKLREGFCHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNI 230
CFKVPHLALRFFNWVK R G CH T TYNTML IAGEAKE L+E+L EME C ++I
Sbjct: 181 CFKVPHLALRFFNWVKFRNGGCHTTRTYNTMLYIAGEAKEFGLVEKLIGEMEEKGCKRDI 240
Query: 231 KTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKE 290
KTWTIL+S YGKAKLIGKALL+ EKM K G EPD AY +L+RSLCNA K DIALEFYKE
Sbjct: 241 KTWTILISHYGKAKLIGKALLILEKMWKSGCEPDVAAYMILIRSLCNAQKADIALEFYKE 300
Query: 291 MAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMR 350
M QKEM LD+SLY++++ C A GD+ V +ADDM+R SQIPERD + C+LKSFC++ R
Sbjct: 301 MVQKEMGLDMSLYELLLTCLAGSGDIAGVQLVADDMIRRSQIPERDVFSCMLKSFCIAGR 360
Query: 351 IREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGII 410
IREALE IR+L K ++++ + FETLVKGLC A RI+DA EIVDIM +R +VD K+YGII
Sbjct: 361 IREALELIRDLNDKNLTLEPNDFETLVKGLCRADRITDAAEIVDIMKKRKVVDAKVYGII 420
Query: 411 IGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGI 470
I GYLR+ND+ KA + M ESGYLP STYTELMQHLF+LNEY+KGC+LY+EML+RG+
Sbjct: 421 ISGYLRRNDIPKAFDVLQTMTESGYLPTISTYTELMQHLFRLNEYQKGCKLYDEMLERGV 480
Query: 471 QPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILK 530
+PDSVA+TAMVAGHVRQ+++ EAWKVF M+++GIR T KSYSVFIKELC++SRT+E++K
Sbjct: 481 EPDSVAITAMVAGHVRQNHIFEAWKVFNSMQERGIRATWKSYSVFIKELCKISRTDEVIK 540
Query: 531 VLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRG 590
VLN MQASKI+IGDE+F+WVIS +EKKGE E V+KV +MQ CK +PQE EASG+ +
Sbjct: 541 VLNEMQASKIIIGDEVFNWVISYLEKKGETEMVKKVMQMQRTCKFYPQEHEASGSIVPKR 600
Query: 591 QGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQ 650
Q N++ + N++E HLVE LPK Y EQDL EICR+LS+S DW I+E+LEKC VQ
Sbjct: 601 QLHNLDFNFNQLESGRMDLHLVEHLPKTYNEQDLQEICRILSTSMDWCLIEEALEKCTVQ 660
Query: 651 YTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLF 710
+T +LV+EIL + +HG AAL FFSWVGK+ YSH++ TYNM IK +G K+F+ MRNLF
Sbjct: 661 FTSQLVVEILRSCSLHGHAALLFFSWVGKRDGYSHTTETYNMGIKISGCSKNFRSMRNLF 720
Query: 711 YEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGR 770
+EMRR G+ +TPDTWTIM+MQYGRAGLTE+A+R F +MKAN C P+GSTYKYLII L GR
Sbjct: 721 FEMRRKGHPVTPDTWTIMIMQYGRAGLTEIALRNFAEMKANDCKPNGSTYKYLIICLCGR 780
Query: 771 KGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLS 830
KGRKVD AIK F EM+ AG++PDKELVE+YL CLCEVG L A+ C + L K+GFT+PLS
Sbjct: 781 KGRKVDEAIKTFLEMIRAGYVPDKELVESYLKCLCEVGKLLDARRCTEALCKLGFTIPLS 840
Query: 831 YSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMK 890
YSLYIRALCRAG LEEALAL+DEV ER LD++++GSL+HGL++RG+++EAL KV++MK
Sbjct: 841 YSLYIRALCRAGRLEEALALVDEVGPERVTLDQYIYGSLVHGLLRRGRLKEALEKVDSMK 900
Query: 891 QAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVA 950
Q GI+PTVHVYTS +VHFF+EKQ+ +ALE F++M++EGCEPT+VTY+ALI+G +G
Sbjct: 901 QIGIHPTVHVYTSLIVHFFKEKQMRKALETFQKMKEEGCEPTIVTYSALIRGHMAMGNFV 960
Query: 951 EAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRTIF 1010
+A +VF +++KGPFPDF+TYSMFI CLCKVGKSEEAL+LLSEM +SGI+PS INFRT+
Sbjct: 961 DARNVFGLLQLKGPFPDFKTYSMFISCLCKVGKSEEALQLLSEMLDSGIIPSTINFRTVM 1020
Query: 1011 FGLNRE 1016
FGLNRE
Sbjct: 1021 FGLNRE 1026
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224107773|ref|XP_002333469.1| predicted protein [Populus trichocarpa] gi|222836989|gb|EEE75382.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1296 bits (3353), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 624/974 (64%), Positives = 767/974 (78%), Gaps = 7/974 (0%)
Query: 50 QTNTYASLFNEITEILGADNVTTDETPSGFSVSKRAPLELIEVSDRFGCSTHAVCENAE- 108
+T T SLF EITEILGAD V D TP GF + + + E+S F VC NAE
Sbjct: 52 ETKTINSLFKEITEILGADVVIPDRTPYGFFIPRETHVGDNEISGEFKYREEGVCGNAEL 111
Query: 109 ------EENLSVLEDTRVGNLGGIDVSPIVHEITEIVRAGNDVVSMEERLENLSFRFEPE 162
E +L D +VG L DVS +VHEIT IVRA N SMEERL+ + F+ EPE
Sbjct: 112 NNGLQKEGSLLAFGDIKVGALNETDVSAVVHEITGIVRAENCTASMEERLDKVGFQLEPE 171
Query: 163 VVDKVLKRCFKVPHLALRFFNWVKLREGFCHATETYNTMLTIAGEAKELELLEELEREME 222
+V+KVLKRC+KVPHLA RFFNWVK ++GFCH T+TYNTML AGEA+E +++ L EME
Sbjct: 172 IVEKVLKRCYKVPHLAYRFFNWVKTKDGFCHTTKTYNTMLYTAGEAREFSVVDVLLEEME 231
Query: 223 INSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGD 282
SC ++IKTWTIL+ YGKAKLIGKALLV EKMRK G EPD Y+V + SLC+AGKG+
Sbjct: 232 KYSCERDIKTWTILIRQYGKAKLIGKALLVHEKMRKSGCEPDVEVYEVTLHSLCDAGKGE 291
Query: 283 IALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVL 342
IALE YKEM Q+EM +LSLYK+++NC AK GDV AV S+ADDM+R+SQIPE D + CVL
Sbjct: 292 IALEIYKEMVQREMEPNLSLYKMLLNCLAKSGDVSAVQSVADDMIRVSQIPEHDVHVCVL 351
Query: 343 KSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLV 402
KS+CV+ RIREALE IR+LK+KEI +D + ETLVKGL A RI+DALEIV+IM R++ V
Sbjct: 352 KSYCVAGRIREALELIRDLKNKEIQLDYEVSETLVKGLSRANRIADALEIVEIMKRKDFV 411
Query: 403 DGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELY 462
DGK+YGIII GYLR+N+LSKAL F+ MKE G+LP STYTELMQHLF+ NEY+K CELY
Sbjct: 412 DGKVYGIIINGYLRRNELSKALDLFQSMKEFGHLPTTSTYTELMQHLFRSNEYQKCCELY 471
Query: 463 NEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRV 522
+EML+RG++ DSVAV A+VAGHVRQD++SEAW+VF+ MEDKGI+PT KSYS+FIKELC+V
Sbjct: 472 DEMLERGVEIDSVAVMAIVAGHVRQDHISEAWEVFETMEDKGIKPTWKSYSIFIKELCKV 531
Query: 523 SRTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEA 582
SRT+EI+KVL MQASK+ I DEIF WVISCME+KGEM+++ KVK+M IC+ H E
Sbjct: 532 SRTDEIIKVLGKMQASKMFICDEIFEWVISCMERKGEMDNIRKVKQMHRICRLHSLNDEV 591
Query: 583 SGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQE 642
S ND SR + +V+ + NE + + V+PL K Y EQDL E+ R+LSS DW IQ+
Sbjct: 592 SRNDLSREEELHVDSNCNESVQGRVDWNSVKPLSKAYDEQDLQEVLRILSSLEDWPIIQD 651
Query: 643 SLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKD 702
+LEKC +Q+TPELV E L N MHG+AALHFF+WVGKQ + ++ TYNMA+K +GRGKD
Sbjct: 652 ALEKCTIQFTPELVAETLRNCGMHGNAALHFFAWVGKQNGFCQTTETYNMAMKVSGRGKD 711
Query: 703 FKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKY 762
FKHMR+LFYEMRR G+LI PDTW IM+MQYGR GLTE+A+++F +MKA+GCNP+ STYKY
Sbjct: 712 FKHMRSLFYEMRRRGFLIPPDTWAIMIMQYGRTGLTEIALKIFGEMKASGCNPNDSTYKY 771
Query: 763 LIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRK 822
LII L GRKGRKVD AIKIF+EM+ AGH+PDKELV TYL CLCEVG L A+ +D L K
Sbjct: 772 LIIFLCGRKGRKVDEAIKIFREMIRAGHVPDKELVGTYLCCLCEVGKLLEARKSVDSLCK 831
Query: 823 VGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEA 882
GFTVP SYSLYIRALCRAG LEEAL+L+D+V E++ LD + SL+HGL+Q+G++EEA
Sbjct: 832 AGFTVPASYSLYIRALCRAGMLEEALSLVDQVSTEKTTLDRYTHASLVHGLLQKGRLEEA 891
Query: 883 LAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQG 942
LAKV++MKQ GI PTVHVYTS +VHFFREK +ALEIFE M+QEGCEPT+VTY+ALI+G
Sbjct: 892 LAKVDSMKQVGINPTVHVYTSLIVHFFREKLASKALEIFESMKQEGCEPTIVTYSALIRG 951
Query: 943 FANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPS 1002
+ + V EAW+VF+ +K KGP PDF+TYSMF+ CLC+ GKSEEAL+LLS+M ++GIVPS
Sbjct: 952 YMDTENVIEAWNVFHSLKTKGPAPDFKTYSMFLSCLCRAGKSEEALQLLSDMVDNGIVPS 1011
Query: 1003 NINFRTIFFGLNRE 1016
N+NFRT+FFGLNRE
Sbjct: 1012 NVNFRTVFFGLNRE 1025
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224088126|ref|XP_002308333.1| predicted protein [Populus trichocarpa] gi|222854309|gb|EEE91856.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1291 bits (3342), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 621/974 (63%), Positives = 766/974 (78%), Gaps = 7/974 (0%)
Query: 50 QTNTYASLFNEITEILGADNVTTDETPSGFSVSKRAPLELIEVSDRFGCSTHAVCENAE- 108
+T T SLF EITEILGAD V D TP GF + + + E+S F VC NAE
Sbjct: 52 ETKTINSLFKEITEILGADVVIPDRTPYGFFIPRETHVGDNEISGEFKYREEGVCGNAEL 111
Query: 109 ------EENLSVLEDTRVGNLGGIDVSPIVHEITEIVRAGNDVVSMEERLENLSFRFEPE 162
E +L D +VG L DVS +VHEIT IVRA N SMEERL+ + F+ EPE
Sbjct: 112 NNGLQKEGSLLAFGDIKVGALNETDVSAVVHEITGIVRAENCTASMEERLDKVGFQLEPE 171
Query: 163 VVDKVLKRCFKVPHLALRFFNWVKLREGFCHATETYNTMLTIAGEAKELELLEELEREME 222
+V+KVLKRC+KVPHLA RFFNWVK ++GFCH T+TYNTML AGEA+E +++ L EME
Sbjct: 172 IVEKVLKRCYKVPHLAYRFFNWVKTKDGFCHTTKTYNTMLYTAGEAREFSVVDVLLEEME 231
Query: 223 INSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGD 282
SC ++IKTWTIL+ YGKAKL+GKALLV EKMRK G EPD Y+V + SLC+AGKG+
Sbjct: 232 KYSCERDIKTWTILIQQYGKAKLVGKALLVHEKMRKSGCEPDVEVYEVTLHSLCDAGKGE 291
Query: 283 IALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVL 342
IALE YKEM Q+EM +LSLYK+++NC AK GDV AV S+ADDM+R+SQIPE D + CVL
Sbjct: 292 IALEIYKEMVQREMEPNLSLYKMLLNCLAKSGDVSAVQSVADDMIRVSQIPEHDVHVCVL 351
Query: 343 KSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLV 402
KS+CV+ RIREALE IR+LK+KEI +D + ETLVKGL A RI+DALEIV+IM R++ V
Sbjct: 352 KSYCVAGRIREALELIRDLKNKEIQLDYEVSETLVKGLSRANRIADALEIVEIMKRKDFV 411
Query: 403 DGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELY 462
DGK+YGIII GYLR+N+LSKAL F+ MKE G+LP STYTELMQHLF+ NEY+K CELY
Sbjct: 412 DGKVYGIIINGYLRRNELSKALDLFQSMKEFGHLPTTSTYTELMQHLFRSNEYQKCCELY 471
Query: 463 NEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRV 522
+EML+RG++ DSVAV A+VAGHVRQD++SEAW+VF+ MEDKGI+PT KSYS+FIKELC+V
Sbjct: 472 DEMLERGVEIDSVAVMAIVAGHVRQDHISEAWEVFETMEDKGIKPTWKSYSIFIKELCKV 531
Query: 523 SRTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEA 582
RT+EI+KVL MQASK+ I DEIF WVISCME+KGEM+++ KVK+M IC+ H E
Sbjct: 532 LRTDEIIKVLGKMQASKMFICDEIFEWVISCMERKGEMDNIRKVKQMHRICRLHSLNDEV 591
Query: 583 SGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQE 642
+ ND SR + +V+ + NE + + V+PL K Y EQDL E+ R+LSS DW IQ+
Sbjct: 592 TRNDLSREEELHVDSNCNESVQGRVDWNSVKPLSKAYDEQDLQEVLRILSSLEDWPIIQD 651
Query: 643 SLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKD 702
+LEKC +Q+TPELV E L N MHG+AALHFF+WVGKQ + ++ TYNMA+K +GRGKD
Sbjct: 652 ALEKCTIQFTPELVAETLRNCGMHGNAALHFFAWVGKQNGFCQTTETYNMAMKVSGRGKD 711
Query: 703 FKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKY 762
FKHMR+LFYEMRR G+LI PDTW IM+MQYGR GLTE+A+++F +MKA+GCNP+ STYKY
Sbjct: 712 FKHMRSLFYEMRRRGFLIPPDTWAIMIMQYGRTGLTEIALKIFGEMKASGCNPNDSTYKY 771
Query: 763 LIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRK 822
LII L GRKGRKVD AIKIF+EM+ AGH+PDKELV TYL CLCEVG L A+ +D L K
Sbjct: 772 LIIFLCGRKGRKVDEAIKIFREMIRAGHVPDKELVGTYLCCLCEVGKLLEARKSVDSLCK 831
Query: 823 VGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEA 882
GFTVP SYSLYIRALCRAG LEEAL+L+D+V E++ LD + SL+HGL+Q+G++EEA
Sbjct: 832 AGFTVPASYSLYIRALCRAGMLEEALSLVDQVSTEKTTLDRYTHASLVHGLLQKGRLEEA 891
Query: 883 LAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQG 942
LAKV++MKQ GI PTVHVYTS +VHFFREK +ALEIFE M+QEGCEPT+VTY+ALI+G
Sbjct: 892 LAKVDSMKQVGINPTVHVYTSLIVHFFREKLASKALEIFESMKQEGCEPTIVTYSALIRG 951
Query: 943 FANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPS 1002
+ + V EAW+VF+ +K KGP PDF+TYSMF+ CLC+ GKSEEAL+LLS+M ++GIVPS
Sbjct: 952 YMDTENVIEAWNVFHSLKTKGPAPDFKTYSMFLSCLCRAGKSEEALQLLSDMVDNGIVPS 1011
Query: 1003 NINFRTIFFGLNRE 1016
N+NFRT+FFGLNRE
Sbjct: 1012 NVNFRTVFFGLNRE 1025
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255566203|ref|XP_002524089.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223536657|gb|EEF38299.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1259 bits (3258), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 628/1054 (59%), Positives = 790/1054 (74%), Gaps = 44/1054 (4%)
Query: 1 MRNLARFQSVCSNSVHKRPQSHLYKLQISRHSSSS------------KSSKPPQFNKPEK 48
MR++ + + SNS +K LY Q+S H S K S+ + +
Sbjct: 1 MRHIIKLHLLGSNSSYK-----LYSSQLSIHQSFCLSSFSKSSKLSHKQSQKTELQGQSE 55
Query: 49 LQTN-TYASLFNEITEILGADNVTTDETPSGFSVSKRAPLELIEVSDRFGCSTHAVCENA 107
+ T T SLF EITEILGADN D+ PSGF +SK + E++ T + +N
Sbjct: 56 ISTTVTINSLFKEITEILGADNFIPDKHPSGFLISKENHQKHDELNAELKTGTRGIYKNV 115
Query: 108 E-------EENLSVLEDTRVGNLGGIDVSPIVHEITEIVRAGNDVVSMEERLENLSFRFE 160
E EE L+DT++ +L IDVSP+V EIT IVRA ND+V+MEERLENL F FE
Sbjct: 116 EPNNVLREEEVFLGLDDTQIRDLNEIDVSPVVREITGIVRAENDLVAMEERLENLGFYFE 175
Query: 161 PEVVDKVLKRCFKVPHLALRFFNWVKLREGFCHATETYNTMLTIAGEAKELELLEELERE 220
PE+V+KVLKRCFKVPHLA RFF+WVK+R+GFCH T+TY TML IAGEAKE +++++L E
Sbjct: 176 PEIVEKVLKRCFKVPHLAFRFFSWVKMRDGFCHTTKTYYTMLYIAGEAKEFKVVDDLVEE 235
Query: 221 MEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGK 280
ME NSC K+IKTW+IL+S +GKAKLIGKALL FEKM+ G EPD YK++V SLCNAGK
Sbjct: 236 MEKNSCEKDIKTWSILISQFGKAKLIGKALLFFEKMKTSGCEPDEKIYKMMVHSLCNAGK 295
Query: 281 GDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGC 340
G++AL FYKEM QK+M LDLSLYKI++ AK GDV AV +A+DM R+SQIPE D C
Sbjct: 296 GEVALAFYKEMVQKDMRLDLSLYKILLISMAKSGDVGAVHLVANDMSRLSQIPEHDVNVC 355
Query: 341 VLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRN 400
+LKSFCV+ +IREALE IR+LK+K+I +D ++ TLVKGLC RI+DA+EIV+IM +RN
Sbjct: 356 ILKSFCVAGKIREALELIRDLKNKDILIDYEYLGTLVKGLCRGDRITDAVEIVEIMKKRN 415
Query: 401 LVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCE 460
L+D KIYGIII GYLRK DLSKA+ F+RMKESG P+ STYTELMQ LF LN+Y KG E
Sbjct: 416 LIDAKIYGIIINGYLRKKDLSKAIELFQRMKESGIQPITSTYTELMQCLFNLNQYDKGFE 475
Query: 461 LYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELC 520
L+NEML+RGI+ DSVA A+VA HVRQ+++SEAW+VF M+DKG PT KSYS+FIKELC
Sbjct: 476 LFNEMLERGIRVDSVATMAIVAAHVRQNHISEAWEVFNTMKDKGANPTWKSYSIFIKELC 535
Query: 521 RVSRTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEG 580
RVSRT+EILKVL MQASKI I ++IF+ I+ MEKKGE+++V+KVK+MQ IC+ H +
Sbjct: 536 RVSRTDEILKVLYKMQASKIFINNDIFNLAIAFMEKKGEVDNVQKVKQMQRICRLHSLQD 595
Query: 581 EASG----------NDASRGQ------GPNVELDHNEM--ERKTTVSHLVEPLPKPYCEQ 622
E SG N + +G+ P+ + +NE E+ T L +P PK EQ
Sbjct: 596 EGSGEQELLVEQNCNQSEQGKWNCHLTKPH-SMSNNETNSEQGLTNCQLAKPHPKSSNEQ 654
Query: 623 DLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQAD 682
DL EIC++LSSS DW +QE+LEKC +Q+TP LVLEILHN MHG+AAL FFSW+G Q
Sbjct: 655 DLKEICKILSSSKDWCIMQEALEKCTLQFTPGLVLEILHNCSMHGNAALKFFSWLGVQTG 714
Query: 683 YSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAM 742
Y H+ TYNMA+K +GR KDFKHMR+LFYEMRR G LITPDTW IM+MQYGR GLTE+++
Sbjct: 715 YCHTKETYNMAMKISGREKDFKHMRSLFYEMRRKGCLITPDTWAIMIMQYGRTGLTEISL 774
Query: 743 RVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLD 802
+ F +MK NG P+ STYKYL+ISL G+KGRKVD AIKIF EM+ +IPD+E+V TYL
Sbjct: 775 KTFTEMKDNGYIPNDSTYKYLLISLCGKKGRKVDEAIKIFHEMIRTRYIPDREVVGTYLS 834
Query: 803 CLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLD 862
CLCE G L A+ D L ++G+T+PLSYSLYIRALCR+G LEEAL+LLDEV ERS LD
Sbjct: 835 CLCEAGRLSEARKSTDSLCRIGYTIPLSYSLYIRALCRSGRLEEALSLLDEVGTERSTLD 894
Query: 863 EFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFE 922
++ +G+L+HGL+++G+ EEALAK+E+MK+AGI PTVHVYTS +VHFF+EKQ+ +A++IFE
Sbjct: 895 QYTYGTLVHGLLRKGRQEEALAKIESMKEAGINPTVHVYTSLIVHFFKEKQIEKAMQIFE 954
Query: 923 RMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVG 982
+M+Q+GCEPTVVTY+ALI+G+ N+ + +AW V +K+KGP PDF+TYSMFI CLCK G
Sbjct: 955 KMQQDGCEPTVVTYSALIRGYMNMERADDAWSVLNHLKLKGPKPDFKTYSMFISCLCKAG 1014
Query: 983 KSEEALELLSEMTESGIVPSNINFRTIFFGLNRE 1016
KSEEAL+LLS M E GIVPS INFRT+FFGLN E
Sbjct: 1015 KSEEALQLLSRMLEDGIVPSTINFRTVFFGLNCE 1048
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356498649|ref|XP_003518162.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1186 bits (3067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 576/1017 (56%), Positives = 767/1017 (75%), Gaps = 8/1017 (0%)
Query: 1 MRNLARFQSVCSNSVHKRPQSHLYKLQISRHSSSSKSSKPPQFNKPEKLQTNTYASLFNE 60
MR+L++ +S S + QSH+ + S + + Q + + T+ +LFNE
Sbjct: 1 MRSLSKIRSWDSILL---SQSHVLNFSNASKFSRTHRTTQQQLSNNKPSDTDASRALFNE 57
Query: 61 ITEILGADNVTTDETPSGFSVSKRAPLELIEVSDRFGCSTHAVCENAEEENLSVLEDTRV 120
ITEILGAD V D++PSGF P + + D+ C T VCENA + N+ +LED ++
Sbjct: 58 ITEILGADTVIPDQSPSGFLFPLETPHSEVGLKDQLDC-TKGVCENAAQ-NVDILEDAQM 115
Query: 121 GNLGGIDVSPIVHEITEIVRAGNDVVSMEERLENLSFRFEPEVVDKVLKRCFKVPHLALR 180
GN+G DVS +V EITEIVR ND S+EERLENLS+ EV VLKRCFKVP LALR
Sbjct: 116 GNMGEKDVSRVVSEITEIVRVENDSSSVEERLENLSYGLNSEVFHMVLKRCFKVPQLALR 175
Query: 181 FFNWVKLREGFCHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLY 240
FNW+KL++GF H T TYNTML IA EAKE L+++L EM+ K++ TWTI+++ Y
Sbjct: 176 VFNWLKLKDGFSHTTRTYNTMLHIAREAKEFGLVKKLVEEMDECGIQKDVNTWTIIINHY 235
Query: 241 GKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDL 300
GKA+ I +ALL FE M++ G EPDAV+Y ++ SLC+AGK DIA+EFY EM +K+MVLD+
Sbjct: 236 GKARKISEALLAFENMKRCGCEPDAVSYGAIICSLCSAGKRDIAMEFYNEMVRKDMVLDV 295
Query: 301 SLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRN 360
LYK+VMNC A+ GD+ AV + +DM+R+S +PE+ +GC+LKSFC+S I EALE IR
Sbjct: 296 RLYKMVMNCMARSGDIAAVSLLGNDMIRLSVMPEKCVHGCMLKSFCISGSIEEALELIRE 355
Query: 361 LKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDL 420
LKSK++ ++ +++ETLV+GLC AGRI+DALEIVDIM RR++VDG+++GIII GYL +ND+
Sbjct: 356 LKSKDLDLEPENYETLVRGLCKAGRITDALEIVDIMKRRDMVDGRVHGIIINGYLGRNDV 415
Query: 421 SKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAM 480
+AL F+ MKESG +P STYTELM HLF+L+ Y++ C LY+EML +GI+PD VA+TAM
Sbjct: 416 DRALEVFQCMKESGCVPTISTYTELMLHLFRLDRYEEACMLYDEMLGKGIKPDVVAITAM 475
Query: 481 VAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASKI 540
VAGHV Q+++S+AWK+FK ME +GI+PT KS++VFIKELC+ S+T++I+KVL+ MQASK
Sbjct: 476 VAGHVSQNHISDAWKMFKSMECQGIKPTWKSFAVFIKELCKASQTDDIVKVLHEMQASKS 535
Query: 541 VIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHN 600
I D++ VI+ M+ KGE+ +EK++++ P++ + S D VE D
Sbjct: 536 RIQDKVLDLVITWMKNKGELTVIEKIQQVHKASILDPEKFKES--DKQVPLRIKVEEDAK 593
Query: 601 EMERKTTVS-HLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEI 659
+ KT + L+ P K Y +QD+HEI R+LSSSTDW IQE LEK +Q++PELV+EI
Sbjct: 594 VDQSKTEIDCSLIHPKLKNYSKQDVHEIRRILSSSTDWSLIQEKLEKSTIQFSPELVMEI 653
Query: 660 LHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYL 719
L + MHGS+ L FFSW+GKQ Y H++ +YN+AIK AG GKDFKHMR+LF+EMRRN Y
Sbjct: 654 LQSCNMHGSSVLKFFSWIGKQTGYRHTAESYNIAIKIAGCGKDFKHMRSLFFEMRRNSYP 713
Query: 720 ITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAI 779
IT +TWTIM+M YGR GLTEMAM F++MKA+ PS STYKYLII+L GRKGRKVD A+
Sbjct: 714 ITSETWTIMIMVYGRTGLTEMAMNCFKEMKADDYVPSRSTYKYLIIALCGRKGRKVDDAL 773
Query: 780 KIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALC 839
KI+ EM++AG++PDKEL+ETYL CLCEVG + A+ C D L+ G+TVPLSYSL+IRALC
Sbjct: 774 KIYGEMISAGYVPDKELIETYLGCLCEVGRVLDARRCTDSLQNFGYTVPLSYSLFIRALC 833
Query: 840 RAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVH 899
RAG++EEALAL +EV EE+ +D+ FGS++HGL+++G++EEALAKV+ MKQ GI PT+H
Sbjct: 834 RAGKVEEALALHEEVGEEKFIIDQLTFGSIVHGLLRKGRLEEALAKVDVMKQNGITPTIH 893
Query: 900 VYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRM 959
V+TS +VHFF+EKQV +A+E FE M G EPT+VTY+ALI+G+ N+G+ +AWD+FYRM
Sbjct: 894 VFTSLIVHFFKEKQVEKAIETFEEMLHSGYEPTIVTYSALIRGYMNVGRPIDAWDIFYRM 953
Query: 960 KIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRTIFFGLNRE 1016
K+KGPFPDF+TYSMF+ CLCKVGKSEE + L+SEM +SGIVPS INFRT+ +GLNRE
Sbjct: 954 KLKGPFPDFKTYSMFLTCLCKVGKSEEGMRLISEMLDSGIVPSTINFRTVVYGLNRE 1010
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297806669|ref|XP_002871218.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297317055|gb|EFH47477.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1135 bits (2935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/978 (57%), Positives = 718/978 (73%), Gaps = 20/978 (2%)
Query: 46 PEKLQTNTYA--SLFNEITEILGADNVTTDETPSGFSVSKRAPLELIEVSDRFGCSTHAV 103
P K+Q+ A SLFNEIT+ILG+D V TDET + AP+ + C T V
Sbjct: 41 PSKIQSEATAITSLFNEITDILGSDVVQTDET-TRLRAHVSAPV--CDNGALVSC-TQGV 96
Query: 104 CENAEEENLSVLEDTRVGNLGGIDVSPIVHEITEIVRAGNDVVSMEERLENLSFRFEPEV 163
ENA E+ + G L +D SP+VH+IT +VRA +++VSME+RLE LSFRFEPE+
Sbjct: 97 RENAAMGFSGENEEAQKGLLEKVDFSPVVHQITSVVRADDEIVSMEDRLEILSFRFEPEI 156
Query: 164 VDKVLKRCFKVPHLALRFFNWVKLREGFCHATETYNTMLTIAGEAKELELLEELEREMEI 223
V+ VLKRCFKVPHLA+RFFNWVKL++GF H YNTML+IAGEA+ L++++EL +EME
Sbjct: 157 VENVLKRCFKVPHLAMRFFNWVKLKDGFSHRVGIYNTMLSIAGEARNLDMVDELVKEMEK 216
Query: 224 NSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDI 283
++C K+I+TWTIL+S+YGKAK IGK LLVFEKMRK GFE DA AY +++RSLC AG+GD+
Sbjct: 217 HACDKDIRTWTILISVYGKAKKIGKGLLVFEKMRKSGFELDAAAYNIMIRSLCIAGRGDL 276
Query: 284 ALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLK 343
ALEFYKEM +K + L YK++++C AK VD V SIADDMVRI +I E DA+G +LK
Sbjct: 277 ALEFYKEMMEKGITFGLRTYKMLLDCIAKSEKVDVVQSIADDMVRICEISEHDAFGYLLK 336
Query: 344 SFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVD 403
SFCVS +I+EALE IR LK+KE+ +D +FE LVKGLC A R+ DALEIVDIM RR L D
Sbjct: 337 SFCVSGKIKEALELIRELKNKEMCLDAKYFEILVKGLCRANRMVDALEIVDIMKRRKLDD 396
Query: 404 GKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYN 463
+YGIII GYLR+ND+SKAL QFE +K+SG P STYTE+MQ LFKL +++KGC L++
Sbjct: 397 SNVYGIIISGYLRQNDVSKALEQFEIIKKSGRPPRVSTYTEIMQQLFKLKQFEKGCNLFS 456
Query: 464 EMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVS 523
EM++ GI+PDSVA+TA+VAGH+ Q+ ++EAWKVF ME+KGI+PT KSYS+F+KELCR S
Sbjct: 457 EMIESGIEPDSVAITAVVAGHLGQNRVAEAWKVFGSMEEKGIKPTWKSYSIFMKELCRSS 516
Query: 524 RTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEAS 583
R +EI+ + N M ASKI I D+IF WVIS MEK GE E ++ +K +Q C + QE S
Sbjct: 517 RYDEIITLFNQMHASKIAIRDDIFSWVISSMEKNGEKEKIDLIKEIQKQCNAYNQELNGS 576
Query: 584 GNDASRGQGPNVELDHNEMERKTTVSHLVE-----PLPKPYCEQDLHEICRMLSSSTDWY 638
G E E+ K +V+ P + D+ EIC +LSSS DW
Sbjct: 577 G---------KAEFMQKELVNKYNRPQVVQQSALPPASSAVDKMDVQEICHVLSSSRDWE 627
Query: 639 HIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAG 698
QE+LEK VQ+TPELV+E+L N+++ G+A L FFSWVGK+ Y H+S YNM+IK AG
Sbjct: 628 RTQEALEKLTVQFTPELVVEVLRNAKIQGNAVLRFFSWVGKRNGYKHNSEAYNMSIKVAG 687
Query: 699 RGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGS 758
GKDFK MR+LFYEMRR G LIT DTW IM+MQYGR GLT +A+R F++MK G PS S
Sbjct: 688 CGKDFKQMRSLFYEMRRQGCLITQDTWAIMIMQYGRTGLTNIAIRTFKEMKDMGLIPSSS 747
Query: 759 TYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMD 818
T+K LI L +KGR V+ A K F+EM+ +G +PD+ELV+ YL CLCEVG + AKSC+D
Sbjct: 748 TFKCLITVLCEKKGRNVEEATKTFREMIRSGFVPDRELVQDYLGCLCEVGNTKDAKSCLD 807
Query: 819 VLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQ 878
L K+GF VP++YS+YIRAL R G+LEEAL+ L + +RS LD++ +GS++HGL+QRG
Sbjct: 808 SLGKIGFPVPVAYSIYIRALSRIGKLEEALSELASFEGDRSLLDQYTYGSIVHGLLQRGD 867
Query: 879 IEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTA 938
+ +AL KV +MK+ GI P VHVYTS +VHFF+EKQ + LE +M++E CEP+VVTYTA
Sbjct: 868 LHKALDKVNSMKEIGIKPGVHVYTSLIVHFFKEKQFEKVLETCHKMKEESCEPSVVTYTA 927
Query: 939 LIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESG 998
+I G+ +LGKV EAW F ++ KG PDF+TYS FI CLC+ GKSE+AL+LLSEM + G
Sbjct: 928 MICGYMSLGKVEEAWKAFRNIEEKGTSPDFKTYSKFINCLCQAGKSEDALKLLSEMLDKG 987
Query: 999 IVPSNINFRTIFFGLNRE 1016
I PS INFRT+F+GLNRE
Sbjct: 988 IAPSTINFRTVFYGLNRE 1005
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240032|ref|NP_196258.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75171850|sp|Q9FNG8.1|PP366_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial; Flags: Precursor gi|9758420|dbj|BAB08962.1| unnamed protein product [Arabidopsis thaliana] gi|332003627|gb|AED91010.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1121 bits (2899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/1023 (55%), Positives = 736/1023 (71%), Gaps = 23/1023 (2%)
Query: 1 MRNLARFQSVCSNSVHKRPQSHLYKLQISRHSSSSKSSKPPQFNKPEKLQTNTYA--SLF 58
M+ L RF+S + +R Q + S S SSKS+K + K+Q A SLF
Sbjct: 1 MKALFRFKSCLFDPTRRRNQL----VSFSGFSKSSKSNKTRETTTTSKIQAEATAITSLF 56
Query: 59 NEITEILGADNVTTDETPSGFS-VSKRAPLELIEVSDRFGCSTHAVC--ENAEEENLSVL 115
NEITEILG D V DET S VS + VS G +A +E+ VL
Sbjct: 57 NEITEILGTDVVKLDETTRLRSHVSGAVSDNGVSVSCTEGVRQNAAMGFSGEDEKAQKVL 116
Query: 116 EDTRVGNLGGIDVSPIVHEITEIVRAGNDVVSMEERLENLSFRFEPEVVDKVLKRCFKVP 175
+ +D SP+VHEIT +VR + +VSME+RLE LSFRFEPE+V+ VLKRCFKVP
Sbjct: 117 HEE-------VDFSPVVHEITSVVRGDDVLVSMEDRLEKLSFRFEPEIVENVLKRCFKVP 169
Query: 176 HLALRFFNWVKLREGFCHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTI 235
HLA+RFFNWVK ++GF H YNTML+IAGEA+ L++++EL EME N C K+I+TWTI
Sbjct: 170 HLAMRFFNWVKQKDGFSHRVGIYNTMLSIAGEARNLDMVDELVSEMEKNGCDKDIRTWTI 229
Query: 236 LVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKE 295
L+S+YGKAK IGK LLVFEKMRK GFE DA AY +++RSLC AG+GD+ALEFYKEM +K
Sbjct: 230 LISVYGKAKKIGKGLLVFEKMRKSGFELDATAYNIMIRSLCIAGRGDLALEFYKEMMEKG 289
Query: 296 MVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREAL 355
+ L YK++++C AK VD V SIADDMVRI +I E DA+G +LKSFCVS +I+EAL
Sbjct: 290 ITFGLRTYKMLLDCIAKSEKVDVVQSIADDMVRICEISEHDAFGYLLKSFCVSGKIKEAL 349
Query: 356 EFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYL 415
E IR LK+KE+ +D +FE LVKGLC A R+ DALEIVDIM RR L D +YGIII GYL
Sbjct: 350 ELIRELKNKEMCLDAKYFEILVKGLCRANRMVDALEIVDIMKRRKLDDSNVYGIIISGYL 409
Query: 416 RKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSV 475
R+ND+SKAL QFE +K+SG P STYTE+MQHLFKL +++KGC L+NEM++ GI+PDSV
Sbjct: 410 RQNDVSKALEQFEVIKKSGRPPRVSTYTEIMQHLFKLKQFEKGCNLFNEMIENGIEPDSV 469
Query: 476 AVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNM 535
A+TA+VAGH+ Q+ ++EAWKVF ME+KGI+PT KSYS+F+KELCR SR +EI+K+ N M
Sbjct: 470 AITAVVAGHLGQNRVAEAWKVFSSMEEKGIKPTWKSYSIFVKELCRSSRYDEIIKIFNQM 529
Query: 536 QASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNV 595
ASKIVI D+IF WVIS MEK GE E + +K +Q + E SG A Q +
Sbjct: 530 HASKIVIRDDIFSWVISSMEKNGEKEKIHLIKEIQKRSNSYCDELNGSGK-AEFSQEEEL 588
Query: 596 ELDHN--EMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQYTP 653
D+N ++ +++ + + + K D+ EICR+LSSS DW QE+LEK VQ+TP
Sbjct: 589 VDDYNCPQLVQQSALPPALSAVDK----MDVQEICRVLSSSRDWERTQEALEKSTVQFTP 644
Query: 654 ELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEM 713
ELV+E+L ++++ G+A L FFSWVGK+ Y H+S YNM+IK AG GKDFK MR+LFYEM
Sbjct: 645 ELVVEVLRHAKIQGNAVLRFFSWVGKRNGYKHNSEAYNMSIKVAGCGKDFKQMRSLFYEM 704
Query: 714 RRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGR 773
RR G LIT DTW IM+MQYGR GLT +A+R F++MK G PS ST+K LI L +KGR
Sbjct: 705 RRQGCLITQDTWAIMIMQYGRTGLTNIAIRTFKEMKDMGLIPSSSTFKCLITVLCEKKGR 764
Query: 774 KVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSL 833
V+ A + F+EM+ +G +PD+ELV+ YL CLCEVG + AKSC+D L K+GF V ++YS+
Sbjct: 765 NVEEATRTFREMIRSGFVPDRELVQDYLGCLCEVGNTKDAKSCLDSLGKIGFPVTVAYSI 824
Query: 834 YIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAG 893
YIRALCR G+LEEAL+ L + ERS LD++ +GS++HGL+QRG +++AL KV +MK+ G
Sbjct: 825 YIRALCRIGKLEEALSELASFEGERSLLDQYTYGSIVHGLLQRGDLQKALDKVNSMKEIG 884
Query: 894 IYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAW 953
P VHVYTS +V+FF+EKQ+ + LE ++M E CEP+VVTYTA+I G+ +LGKV EAW
Sbjct: 885 TKPGVHVYTSLIVYFFKEKQLEKVLETCQKMEGESCEPSVVTYTAMICGYMSLGKVEEAW 944
Query: 954 DVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRTIFFGL 1013
+ F M+ +G PDF+TYS FI CLC+ KSE+AL+LLSEM + GI PS INFRT+F+GL
Sbjct: 945 NAFRNMEERGTSPDFKTYSKFINCLCQACKSEDALKLLSEMLDKGIAPSTINFRTVFYGL 1004
Query: 1014 NRE 1016
NRE
Sbjct: 1005 NRE 1007
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437886|ref|XP_004136721.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial-like [Cucumis sativus] gi|449501176|ref|XP_004161299.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1088 bits (2813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 562/1025 (54%), Positives = 747/1025 (72%), Gaps = 21/1025 (2%)
Query: 1 MRNLARFQSVCSNSVHK--RPQSHLYKLQISRHSSSSKS-SKPPQFNKPEKLQ-TNTYAS 56
MR L R +S SNS R + + K + S SSSS ++ Q+ PE + ++++ S
Sbjct: 1 MRRLIRLRSPYSNSTLNFLRFSTFIRKRKGSSSSSSSSGGTQKSQY--PEAVDASSSFRS 58
Query: 57 LFNEITEILGADNVTTDETPSGFSVSKRAPLELIEVSDRFGCSTHAVCENAEEENLSVLE 116
LFNEITEILG+++ D+ K +P + VC+NAE+E E
Sbjct: 59 LFNEITEILGSESCVHDKISFRDLGLKGSPEGEFLNGEEHLPGAPDVCKNAEQET----E 114
Query: 117 DTRVGNLGGIDVSPIVHEITEIVRAGNDVVSMEERLENLSFRFEPEVVDKVLKRCFKVPH 176
T++ L DVS +VHEIT ++R GN +VSMEERL NL F E+V+KVLKRCFK PH
Sbjct: 115 GTQLVVLEENDVSSVVHEITAVIRGGNGLVSMEERLGNLDVMFSSEIVEKVLKRCFKFPH 174
Query: 177 LALRFFNWVKLREGFCHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTIL 236
LAL FFNWVK R+GF T +NT+L+IAGEA++ +L+++L EME S K+IKTWTIL
Sbjct: 175 LALGFFNWVKSRDGFQCTTNVFNTVLSIAGEARDFKLIDKLLEEMESYSLLKDIKTWTIL 234
Query: 237 VSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEM 296
+SLYG AKL GK+L+V+ KM++ G EPD V YK L+ SL AGK ++A+EFY+EMA+K +
Sbjct: 235 ISLYGNAKLTGKSLMVYSKMKESGCEPDGVVYKTLICSLSAAGKPELAMEFYQEMAKKGI 294
Query: 297 -VLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREAL 355
V+D+ + K++++ A GD +VL IA DMV + + ERD Y +LKSFC+S RI+EAL
Sbjct: 295 SVVDMKMCKMLLSSLAGSGDTASVLDIAKDMVALFNVQERDVYHYILKSFCISRRIKEAL 354
Query: 356 EFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYL 415
EFIR+L SK I +D ++FE L+ GLC A RI DALE+++I+ R+ VDGKIYGIII YL
Sbjct: 355 EFIRDLNSKGIVLDSEYFEILIGGLCRANRIEDALELINIIKRKGDVDGKIYGIIINWYL 414
Query: 416 RKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSV 475
RKN++SKAL F+ MKE GY P STYT+LMQHLF L EY+KG ELY EML++GI+ D+V
Sbjct: 415 RKNEVSKALDLFQNMKEMGYFPTTSTYTQLMQHLFSLAEYEKGFELYKEMLEKGIELDTV 474
Query: 476 AVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNM 535
A+ +V G+VRQ+ ++EAW VF+ ME+K PT KS SVFI+EL R+SRT+EI+KVLN M
Sbjct: 475 AIMTVVVGNVRQNRITEAWNVFRTMENK---PTWKSCSVFIRELFRISRTDEIVKVLNEM 531
Query: 536 QASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASG-NDAS--RGQG 592
Q IVI D++F V+S MEK G++ +EKVK+M+ I + PQE E + NDA + G
Sbjct: 532 QELNIVIPDKLFRSVVSYMEKNGDVICLEKVKKMKSIVELFPQEDEINRENDAPTIKDLG 591
Query: 593 PNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQYT 652
V H+ + T+V+ +E LP+ Y E+DL I ++LSSSTDW I+++LE C+V+++
Sbjct: 592 MEVNFKHS---KPTSVTCHLETLPRNYREEDLDAIYKILSSSTDWKLIKKALENCSVEFS 648
Query: 653 PELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYE 712
PELV+EIL + G AA +FF+WVGKQ Y+H++ TYNMAIK AG GKDFKHMR+LFYE
Sbjct: 649 PELVIEILRKCSLDGCAAFNFFAWVGKQPGYNHTTETYNMAIKIAGLGKDFKHMRSLFYE 708
Query: 713 MRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKG 772
MRR G ITP TWTIM+MQY RAGLTE+A++ +E+MK P+ +TYKYLI+SL K
Sbjct: 709 MRRRGCSITPYTWTIMIMQYARAGLTEIALKSYEEMKEINIKPNANTYKYLIMSLCESKR 768
Query: 773 RKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYS 832
RKVD AI +FQEM+++ +IPDKEL+ETYL CLC++ L AK C+D LRKVGF++PL+YS
Sbjct: 769 RKVDEAITLFQEMIHSKYIPDKELLETYLGCLCKLSRLSDAKKCIDHLRKVGFSIPLTYS 828
Query: 833 LYIRALCRAGELEEALALLDE-VKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQ 891
LYIRALCRA +L+EAL LL+E V +ERSKLD +++GSL++GL+Q G+ EEALAK+ +MKQ
Sbjct: 829 LYIRALCRARKLDEALTLLEEVVGDERSKLDSYIYGSLVYGLLQTGRTEEALAKMNSMKQ 888
Query: 892 AGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAE 951
GI PTVHVYTSF+V+ F+EKQ RALEI +M QEGCEP++ TY+A++ G+ N+GKV E
Sbjct: 889 VGINPTVHVYTSFIVYSFKEKQTRRALEILAKMLQEGCEPSIATYSAIVHGYMNMGKVCE 948
Query: 952 AWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRTIFF 1011
AW VF MK GP PDF+ Y+M I CLCK G+SEEALE++S+M +GI PS+INFRT+ F
Sbjct: 949 AWKVFNYMKKYGPSPDFKAYTMLISCLCKAGRSEEALEIISDMLNNGIAPSSINFRTVIF 1008
Query: 1012 GLNRE 1016
GLNRE
Sbjct: 1009 GLNRE 1013
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115488482|ref|NP_001066728.1| Os12g0456100 [Oryza sativa Japonica Group] gi|77555567|gb|ABA98363.1| hypothetical protein LOC_Os12g27060 [Oryza sativa Japonica Group] gi|113649235|dbj|BAF29747.1| Os12g0456100 [Oryza sativa Japonica Group] gi|125579252|gb|EAZ20398.1| hypothetical protein OsJ_36005 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/929 (42%), Positives = 579/929 (62%), Gaps = 43/929 (4%)
Query: 121 GNLGGI-DVSPIVHEITEIVRAGNDVVSMEERLENLSFRFEPEVVDKVLKRCFKVPHLAL 179
GN G + ++S +VH +TE++RA +S+E+RLENL + P +V VL RCFK HL
Sbjct: 167 GNAGDVENISEVVHRVTEVLRAEVPGLSVEQRLENLGVTYTPRLVSLVLNRCFKKRHLGF 226
Query: 180 RFFNWVKLREGFCHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSL 239
+FF+WV+ GF H TETYN ML IAGE + +E+L EM+ C K+IKTWTI++S
Sbjct: 227 KFFDWVRQVPGFQHTTETYNAMLYIAGEERNFGAMEKLMDEMDKEMCLKDIKTWTIVISS 286
Query: 240 YGKAKLIGKALLVFEKMRKY-GFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVL 298
YGKA+ IGK L F+ M K D+ Y+ ++ +LCN+ K ++ALEFYK+MA+ V
Sbjct: 287 YGKARQIGKMLSTFQAMGKSRHVAADSKVYRTILHALCNSAKSELALEFYKDMARNTEV- 345
Query: 299 DLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFI 358
++++++ C A + + V + DDM++ + PE Y L+SFCVS +I EA +
Sbjct: 346 GSDIFRLLLCCLAGSDNAEGVFYVRDDMIKSMKYPEEYCYLEALRSFCVSGKIEEAQKIF 405
Query: 359 RNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKN 418
+ + +K I+ FE L++GLC GR+ AL++++ M + +G +I GYLRK
Sbjct: 406 QQMMNKSIA-SSSAFEILLRGLCKDGRMDKALQVMEYMKSNSSASSATFGSLIDGYLRKG 464
Query: 419 DLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVT 478
+ KAL + M+E G +P+AS+YT+LMQHLF ++++ C LY EM + GI+PD VA+T
Sbjct: 465 ERMKALEVLQEMREYGCVPLASSYTQLMQHLFAFDQHEAACRLYEEMQENGIEPDVVAIT 524
Query: 479 AMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQAS 538
A++ GHVR ++SEAW F+ + + G +PT K+Y+VFI+ELC+ SR E LK+L M S
Sbjct: 525 ALIGGHVRNGHISEAWDAFRNINENGQKPTLKAYTVFIQELCKASRPLEALKLLKEMLES 584
Query: 539 KIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGI--CKHHPQEGEASGNDA--------- 587
++ F +IS + +E ++RM+ C +E + D
Sbjct: 585 DFRPSEQTFSRIISTLYDNHYLEEASNIERMRASFNCCSPIEELQRRTLDQVDYTDKFEK 644
Query: 588 SRGQGPNVELDHNEMERKTTVSHLVEP----------LP----------KPYCEQDLHEI 627
S G GP E++ TV + P P K Y +D+ +I
Sbjct: 645 SSGSGPE--------EKERTVEFVGHPSYKDCEVSGSFPCDDTQDLEQAKDYNNEDVEQI 696
Query: 628 CRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSS 687
CR+LSSS W I+++LE ++ +TP+LV I+ + + AAL FFSWVGK++ Y ++
Sbjct: 697 CRILSSSDCWSSIEQALEMTSISFTPDLVDAIMKRCKANSRAALQFFSWVGKRSYYMQTT 756
Query: 688 ATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFED 747
TYN AIK AG KDFKHMR+L+ EM T DTW +M+ QYG AGLTEMA+ F
Sbjct: 757 KTYNTAIKLAGSAKDFKHMRHLYREMIWAECCPTVDTWNVMICQYGNAGLTEMALETFYQ 816
Query: 748 MKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEV 807
MK G P +TY +LI+ LS RKGRKVD A+KIF EM AG+IPD +V TYL LCE
Sbjct: 817 MKQGGFQPDKTTYSHLIMYLSRRKGRKVDAAVKIFHEMCRAGYIPDNGMVCTYLSVLCEC 876
Query: 808 GMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFG 867
GM+ A+S + +L K GF++ YS+ IR+LCR+ + EAL+L D +K +++G
Sbjct: 877 GMIDRAESSVVLLCKHGFSIQAGYSILIRSLCRSDRMAEALSLFDNIKNYGCSRSAYMYG 936
Query: 868 SLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQE 927
SLIH L++R + E+A AK+ MK GI + H+YTSF++++ ++ V +A+++ + M +
Sbjct: 937 SLIHALLRRDRFEDASAKLAEMKNLGIAQSTHMYTSFMIYYLGKRDVSKAMDVLKEMTEN 996
Query: 928 GCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEA 987
GCEPTVVTY+ALI+G +G V+EAWDVF RMK+KGP PDF TYSMF+ CLCK G+SE+
Sbjct: 997 GCEPTVVTYSALIRGHMAMGMVSEAWDVFQRMKLKGPVPDFETYSMFMSCLCKAGRSEDG 1056
Query: 988 LELLSEMTESGIVPSNINFRTIFFGLNRE 1016
L+L+ +M SGI+PS +NFRT+ GLN E
Sbjct: 1057 LQLIHDMLNSGIIPSAVNFRTVVHGLNME 1085
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125536538|gb|EAY83026.1| hypothetical protein OsI_38244 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/929 (42%), Positives = 580/929 (62%), Gaps = 43/929 (4%)
Query: 121 GNLGGI-DVSPIVHEITEIVRAGNDVVSMEERLENLSFRFEPEVVDKVLKRCFKVPHLAL 179
GN G + ++S +VH +TE++RA +S+E+RLENL + P +V VL RCFK HL
Sbjct: 167 GNAGDVENISEVVHRVTEVLRAEVPGLSVEQRLENLGVTYTPRLVSLVLNRCFKKRHLGF 226
Query: 180 RFFNWVKLREGFCHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSL 239
+FF+WV+ GF + TETYN ML IAGE + +E+L EM+ C K+IKTWTI++S
Sbjct: 227 KFFDWVRQVPGFQNTTETYNAMLYIAGEERNFGAMEKLMDEMDKEMCLKDIKTWTIVISS 286
Query: 240 YGKAKLIGKALLVFEKMRKY-GFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVL 298
YGKA+ IGK L F+ M K D+ Y+ ++R+LCN+ K ++ALEFYK+MA+ V
Sbjct: 287 YGKARQIGKMLSTFQAMGKSRHVAADSKVYRTILRALCNSAKSELALEFYKDMARNTEV- 345
Query: 299 DLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFI 358
++++++ C A + + V + DDM++ + PE Y L+SFCVS +I EA +
Sbjct: 346 GSDIFRLLLCCLAGSDNAEGVFYVRDDMIKSMKYPEEYCYLEALRSFCVSGKIEEAQKIF 405
Query: 359 RNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKN 418
+ + +K I+ FE L++GLC GR+ AL++++ M + +G +I GYLRK
Sbjct: 406 QQMMNKSIA-SSSAFEILLRGLCKDGRMDKALQVMEYMKSNSSASSATFGSLIDGYLRKG 464
Query: 419 DLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVT 478
+ KAL + M+E G +P+AS+YT+LMQHLF ++++ C LY EM + GI+PD VA+T
Sbjct: 465 ERMKALEVLQEMREYGCVPLASSYTQLMQHLFAFDQHEAACRLYEEMQENGIEPDVVAIT 524
Query: 479 AMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQAS 538
A++ GHVR ++SEAW F+ + + G +PT K+Y+VFI+ELC+ SR E LK+L M S
Sbjct: 525 ALIGGHVRNGHISEAWDAFRNINENGQKPTLKAYTVFIQELCKASRPLEALKLLKEMLES 584
Query: 539 KIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGI--CKHHPQEGEASGNDA--------- 587
++ F +IS + +E ++RM+ C +E + D
Sbjct: 585 DFRPSEQTFSRIISTLYDNHYLEEASNIERMRASFNCCSPIEELQRRTLDQVDYTDKFEK 644
Query: 588 SRGQGPNVELDHNEMERKTTVSHLVEP----------LP----------KPYCEQDLHEI 627
S G GP E++ TV + P P K Y +D+ +I
Sbjct: 645 SSGSGPE--------EKERTVEFVGHPSYKDCEVSGSFPCDDTQDLEQAKDYNNEDVEQI 696
Query: 628 CRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSS 687
CR+LSSS W I+++LE ++ +TP+LV I+ + + AAL FFSWVGK++ Y ++
Sbjct: 697 CRILSSSDCWSSIEQALEMTSISFTPDLVEAIMKRCKANSRAALQFFSWVGKRSYYMQTT 756
Query: 688 ATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFED 747
TYN AIK AG KDFKHMR+L+ EM T +TW +M+ QYG AGLTEMA+ F
Sbjct: 757 KTYNTAIKLAGSAKDFKHMRHLYREMIWAECCPTVNTWNVMICQYGNAGLTEMALETFYQ 816
Query: 748 MKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEV 807
MK G P +TY +LI+ LS RKGRKVD A+KIF EM AG+IPD +V TYL LCE
Sbjct: 817 MKQGGFQPDKTTYSHLIMYLSRRKGRKVDAAVKIFHEMCRAGYIPDNGMVRTYLSVLCEC 876
Query: 808 GMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFG 867
GM+ A+S + +L K GF++ YS+ IR+LCR+ + EAL+L D +K +++G
Sbjct: 877 GMIDRAESSVVLLCKHGFSIQAGYSILIRSLCRSDRMAEALSLFDNIKNYGCSRSAYMYG 936
Query: 868 SLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQE 927
SLIH L++R + E+A AK+ MK GI + H+YTSF++++ ++ V +A+++ + M +
Sbjct: 937 SLIHVLLRRDRFEDASAKLAEMKNLGIAQSTHMYTSFMIYYLGKRDVSKAMDVLKEMTEN 996
Query: 928 GCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEA 987
GCEPTVVTY+ALI+G +G V+EAWDVF RMK+KGP PDF TYSMF+ CLCK G+SE+
Sbjct: 997 GCEPTVVTYSALIRGHMAMGMVSEAWDVFQRMKLKGPVPDFETYSMFMSCLCKAGRSEDG 1056
Query: 988 LELLSEMTESGIVPSNINFRTIFFGLNRE 1016
L+L+ +M SGI+PS +NFRT+ GLN E
Sbjct: 1057 LQLIHDMLNSGIIPSALNFRTVVHGLNME 1085
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FNG8 | PP366_ARATH | No assigned EC number | 0.5562 | 0.9633 | 0.9708 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00027169001 | SubName- Full=Chromosome chr8 scaffold_41, whole genome shotgun sequence; (1075 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1038 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-17 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-16 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-16 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 88.4 bits (219), Expect = 1e-17
Identities = 81/323 (25%), Positives = 141/323 (43%), Gaps = 5/323 (1%)
Query: 690 YNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMK 749
Y I T + M +F+EM G T+ ++ RAG A + M+
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534
Query: 750 ANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGH--IPDKELVETYLDCLCEV 807
+ P + LI S G+ G VD A + EM H PD V +
Sbjct: 535 SKNVKPDRVVFNALI-SACGQSG-AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592
Query: 808 GMLQLAKSCMDVLRKVGFT-VPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVF 866
G + AK ++ + P Y++ + + + G+ + AL++ D++K++ K DE F
Sbjct: 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652
Query: 867 GSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQ 926
+L+ G +++A ++ ++ GI Y+S + K +ALE++E ++
Sbjct: 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712
Query: 927 EGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEE 986
PTV T ALI ++ +A +V MK G P+ TYS+ + + ++
Sbjct: 713 IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772
Query: 987 ALELLSEMTESGIVPSNINFRTI 1009
L+LLS+ E GI P+ + R I
Sbjct: 773 GLDLLSQAKEDGIKPNLVMCRCI 795
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 83.8 bits (207), Expect = 3e-16
Identities = 73/339 (21%), Positives = 147/339 (43%), Gaps = 15/339 (4%)
Query: 689 TYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDT--WTIMMMQYGRAGLTEMAMRVFE 746
T+NM + +D + ++ G + D +T ++ ++G + VF
Sbjct: 439 TFNMLMSVCASSQDIDGALRVLRLVQEAG--LKADCKLYTTLISTCAKSGKVDAMFEVFH 496
Query: 747 DMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCE 806
+M G + T+ LI R G +V A + M + PD+ + + +
Sbjct: 497 EMVNAGVEANVHTFGALIDG-CARAG-QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 807 VGMLQLAKSCMDVLRKVGF-TVPL-----SYSLYIRALCRAGELEEALALLDEVKEERSK 860
G + A DVL ++ T P+ + ++A AG+++ A + + E K
Sbjct: 555 SGAVDRA---FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611
Query: 861 LDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEI 920
V+ ++ Q+G + AL+ + MK+ G+ P +++ V + +A EI
Sbjct: 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671
Query: 921 FERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCK 980
+ R++G + V+Y++L+ +N +A +++ +K P T + I LC+
Sbjct: 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731
Query: 981 VGKSEEALELLSEMTESGIVPSNINFRTIFFGLNREDNL 1019
+ +ALE+LSEM G+ P+ I + + R+D+
Sbjct: 732 GNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 4e-16
Identities = 66/289 (22%), Positives = 122/289 (42%), Gaps = 42/289 (14%)
Query: 227 AKNIK----TWTILVSLYGKAKLIGKALLVFEKMR--KYGFEPDAVAYKVLVRSLCNAGK 280
+KN+K + L+S G++ + +A V +M+ + +PD + L+++ NAG+
Sbjct: 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594
Query: 281 GDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGC 340
D A E Y+ + + + +Y I +N ++ GD D LSI DDM + P
Sbjct: 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP------- 647
Query: 341 VLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRN 400
D F LV AG + A EI+ ++
Sbjct: 648 ----------------------------DEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679
Query: 401 LVDGKI-YGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGC 459
+ G + Y ++G + KAL +E +K P ST L+ L + N+ K
Sbjct: 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKAL 739
Query: 460 ELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPT 508
E+ +EM + G+ P+++ + ++ R+D+ + ++ GI+P
Sbjct: 740 EVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 1e-15
Identities = 80/363 (22%), Positives = 153/363 (42%), Gaps = 40/363 (11%)
Query: 187 LREGFCHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLI 246
++ GF N+++ + E++ ME K+ +WT ++S Y K L
Sbjct: 315 VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLP 370
Query: 247 GKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIV 306
KAL + M + PD + ++ + G D+ ++ + E+A+++ L Y +V
Sbjct: 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH-ELAERK---GLISYVVV 426
Query: 307 MNCA----AKLGDVDAVLSIADDMVRISQIPERD--AYGCVLKSFCVSMRIREALEFIRN 360
N +K +D L + IPE+D ++ ++ ++ R EAL F R
Sbjct: 427 ANALIEMYSKCKCIDKALEV------FHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQ 480
Query: 361 LKSKEISMDRDHFETLVKGLCIAGRISDAL----EIVDIMMRRNL-VDGKIYGIIIGGYL 415
+ + + TL+ L RI AL EI ++R + DG + ++ Y+
Sbjct: 481 MLLTL----KPNSVTLIAALSACARIG-ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV 535
Query: 416 RKNDLSKALVQFERMKE--SGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPD 473
R ++ A QF ++ + + + Y + + EL+N M++ G+ PD
Sbjct: 536 RCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAV-------ELFNRMVESGVNPD 588
Query: 474 SVAVTAMVAGHVRQDNLSEAWKVFKCMEDK-GIRPTRKSYSVFIKELCRVSRTNEILKVL 532
V +++ R +++ + F ME+K I P K Y+ + L R + E +
Sbjct: 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFI 648
Query: 533 NNM 535
N M
Sbjct: 649 NKM 651
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 78.8 bits (194), Expect = 1e-14
Identities = 92/464 (19%), Positives = 194/464 (41%), Gaps = 50/464 (10%)
Query: 109 EENLSVLEDTRVGNLGGIDVSPIVHEITEIVRAGNDVVSMEERLENLSFRFEPEVVDKVL 168
EE S + +R+ N+ G+ + + N+ V E S + +V ++
Sbjct: 297 EEKQSRAKSSRLPNVKGLRKGVSSATNSLSLDKKNNGVKDAELPGQSSGQAASDVEEENS 356
Query: 169 KRCFKVPHLALRFFNWVKLREGFCHATETYNTMLTIAGEAKE-LELLEELERE-----ME 222
+ V + + YN +L G K+ ++LLE++E+ +
Sbjct: 357 LAAYNGG---------VSGKRKSPEYIDAYNRLL-RDGRIKDCIDLLEDMEKRGLLDMDK 406
Query: 223 IN------SCAK-----------------NIKTWTILVSLYGKAKLIGKALLVFEKMRKY 259
I +C K + T+ +L+S+ ++ I AL V +++
Sbjct: 407 IYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEA 466
Query: 260 GFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAV 319
G + D Y L+ + +GK D E + EM + ++ + +++ A+ G V
Sbjct: 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526
Query: 320 LSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDH--FETLV 377
M + P+R + ++ + S + A + + +K++ +D DH L+
Sbjct: 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALM 586
Query: 378 KGLCIAGRISDALEIVDIMMRRNLVDG--KIYGIIIGGYLRKNDLSKALVQFERMKESGY 435
K AG++ A E+ M+ + G ++Y I + +K D AL ++ MK+ G
Sbjct: 587 KACANAGQVDRAKEVYQ-MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV 645
Query: 436 LP---MASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSE 492
P S ++ H L+ K E+ + K+GI+ +V+ ++++ N +
Sbjct: 646 KPDEVFFSALVDVAGHAGDLD---KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702
Query: 493 AWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQ 536
A ++++ ++ +RPT + + I LC ++ + L+VL+ M+
Sbjct: 703 ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK 746
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 2e-13
Identities = 25/50 (50%), Positives = 30/50 (60%)
Query: 931 PTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCK 980
P VVTY LI G+ GKV EA +F MK +G P+ TYS+ I LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 1e-11
Identities = 82/342 (23%), Positives = 154/342 (45%), Gaps = 50/342 (14%)
Query: 707 RNLFYEM-RRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLII 765
R LF EM RN +W ++ AG A +F +M +G + T+ ++
Sbjct: 178 RRLFDEMPERNLA-----SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR 232
Query: 766 SLSG----RKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLR 821
+ +G R G+++ H ++ G + D + +D + G ++ A+ D +
Sbjct: 233 ASAGLGSARAGQQL-HCC-----VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP 286
Query: 822 K---VGF-TVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRG 877
+ V + ++ Y+L+ G EEAL L E+++ +D+F F +I
Sbjct: 287 EKTTVAWNSMLAGYALH-------GYSEEALCLYYEMRDSGVSIDQFTFSIMI------- 332
Query: 878 QIEEALAKVETMKQA-------GIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCE 930
+I LA +E KQA G + T+ V + + ++ A +F+RM ++
Sbjct: 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK--- 389
Query: 931 PTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALEL 990
++++ ALI G+ N G+ +A ++F RM +G P+ T+ + G SE+ E+
Sbjct: 390 -NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448
Query: 991 LSEMTES-GIVPSNINFRTIFFGLNRE---DNLYQITKR-PF 1027
M+E+ I P +++ + L RE D Y + +R PF
Sbjct: 449 FQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPF 490
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.7 bits (146), Expect = 2e-11
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 896 PTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFAN 945
P V Y + + + ++ +V AL++F M++ G +P V TY+ LI G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 3e-10
Identities = 61/272 (22%), Positives = 98/272 (36%), Gaps = 41/272 (15%)
Query: 712 EMRRNGYLITPDTWTI--MMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSG 769
EM+ + I PD T+ +M AG + A V++ + N G+ Y I S
Sbjct: 567 EMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY--NIKGTPEVYTIAVNSC 624
Query: 770 RKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTV-P 828
+ D A+ I+ +M G PD+ +D G L A + RK G +
Sbjct: 625 SQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684
Query: 829 LSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVET 888
+SYS + A A ++AL L +++K KL
Sbjct: 685 VSYSSLMGACSNAKNWKKALELYEDIKS--IKLR-------------------------- 716
Query: 889 MKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGK 948
PTV + + Q+ +ALE+ M++ G P +TY+ L+
Sbjct: 717 -------PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD 769
Query: 949 VAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCK 980
D+ + K G P+ G LC
Sbjct: 770 ADVGLDLLSQAKEDGIKPNLVMCRCITG-LCL 800
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 5e-10
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 472 PDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCR 521
PD V ++ G+ ++ + EA K+F M+ +GI+P +YS+ I LC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 2e-09
Identities = 65/303 (21%), Positives = 123/303 (40%), Gaps = 39/303 (12%)
Query: 724 TWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQ 783
+WT M+ Y + GL + A+ + M+ + +P T ++S G +D +K+ +
Sbjct: 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS-VLSACACLGD-LDVGVKLHE 413
Query: 784 EMVNAGHIP----DKELVETYLDCLC---------------------EVGMLQLAKSCMD 818
G I L+E Y C C + L+L C +
Sbjct: 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFE 473
Query: 819 VL---RKVGFTV-PLSYSLY--IRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHG 872
L R++ T+ P S +L + A R G L + V D F+ +L+
Sbjct: 474 ALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533
Query: 873 LVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPT 932
V+ G++ A + + ++ V + + + + A+E+F RM + G P
Sbjct: 534 YVRCGRMNYAWNQFNSHEK-----DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588
Query: 933 VVTYTALIQGFANLGKVAEAWDVFYRMKIK-GPFPDFRTYSMFIGCLCKVGKSEEALELL 991
VT+ +L+ + G V + + F+ M+ K P+ + Y+ + L + GK EA +
Sbjct: 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFI 648
Query: 992 SEM 994
++M
Sbjct: 649 NKM 651
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 2e-09
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 228 KNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCN 277
++ T+ L+ Y K + +AL +F +M+K G +P+ Y +L+ LC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 5e-08
Identities = 84/471 (17%), Positives = 174/471 (36%), Gaps = 83/471 (17%)
Query: 176 HLALRFFNWVKLREGFCHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTI 235
AL F ++ F TY+ ++ K + ++ + +E + +
Sbjct: 104 REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163
Query: 236 LVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQ-- 293
++ ++ K ++ A +F++M E + ++ ++ L +AG A ++EM +
Sbjct: 164 VLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDG 219
Query: 294 -----KEMVLDL-------SLY--KIVMNCAAKLGDVDAVL-------------SIADDM 326
+ V+ L S + + C K G V I D
Sbjct: 220 SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDAR 279
Query: 327 VRISQIPERD--AYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVK------ 378
+PE+ A+ +L + + EAL ++ +S+D+ F +++
Sbjct: 280 CVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339
Query: 379 ----------GL-------------------CIAGRISDALEIVDIMMRRNLVDGKIYGI 409
GL GR+ DA + D M R+NL+ +
Sbjct: 340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLIS---WNA 396
Query: 410 IIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLK-R 468
+I GY +KA+ FERM G P T+ ++ ++G E++ M +
Sbjct: 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH 456
Query: 469 GIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEI 528
I+P ++ M+ R+ L EA+ + + +PT ++ + CR+ + E+
Sbjct: 457 RIKPRAMHYACMIELLGREGLLDEAYAMIR---RAPFKPTVNMWAALLTA-CRIHKNLEL 512
Query: 529 LKV----LNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKH 575
++ L M K+ + + S ++ E V + + +G+ H
Sbjct: 513 GRLAAEKLYGMGPEKLNNYVVLLNLYNS-SGRQAEAAKVVETLKRKGLSMH 562
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 7e-08
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 966 PDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRTIFFGL 1013
PD TY+ I CK GK EEAL+L +EM + GI P+ + + GL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 7e-08
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 441 TYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVR 486
TY L+ K + ++ +L+NEM KRGI+P+ + ++ G +
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 2e-07
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 4/137 (2%)
Query: 835 IRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGI 894
+RALC G+LE+AL LL+ ++E R +DE + +L + +EE +
Sbjct: 58 LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHP 117
Query: 895 YPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWD 954
V + + + F R ++ A +F +M E + ++ L+ G+A G EA
Sbjct: 118 SLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALC 173
Query: 955 VFYRMKIKGPFPDFRTY 971
+++RM G PD T+
Sbjct: 174 LYHRMLWAGVRPDVYTF 190
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 3e-07
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 724 TWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLI 764
T+ ++ Y + G E A+++F +MK G P+ TY LI
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 7e-07
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 928 GCEPTVVTYTALIQGFANLGKVAEAWDVFYRMK 960
G +P VVTY LI G G+V EA ++ M+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 55/265 (20%), Positives = 110/265 (41%), Gaps = 11/265 (4%)
Query: 741 AMRVFEDMKANGCNPSG-STYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVET 799
A+ +FE ++A STY L+ + + + ++ + ++G PD+ ++
Sbjct: 106 ALELFEILEAGCPFTLPASTYDALVEACIAL--KSIRCVKAVYWHVESSGFEPDQYMMNR 163
Query: 800 YLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERS 859
L + GML A+ D + + S+ I L AG EA AL E+ E+ S
Sbjct: 164 VLLMHVKCGMLIDARRLFDEMPERNL---ASWGTIIGGLVDAGNYREAFALFREMWEDGS 220
Query: 860 KLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALE 919
+ F ++ G + + G+ V + + + + + A
Sbjct: 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280
Query: 920 IFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLC 979
+F+ M ++ T V + +++ G+A G EA ++Y M+ G D T+S+ I
Sbjct: 281 VFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336
Query: 980 KVGKSEEALELLSEMTESGIVPSNI 1004
++ E A + + + +G P +I
Sbjct: 337 RLALLEHAKQAHAGLIRTGF-PLDI 360
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 5e-06
Identities = 19/34 (55%), Positives = 21/34 (61%)
Query: 969 RTYSMFIGCLCKVGKSEEALELLSEMTESGIVPS 1002
TY+ I LCK G+ EEALEL EM E GI P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 8e-06
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 830 SYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGL 873
+Y+ I C+ G++EEAL L +E+K+ K + + + LI GL
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 8e-06
Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 12/170 (7%)
Query: 842 GELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVY 901
G L +A L DE+ E + +G++I GLV G EA A M + G +
Sbjct: 172 GMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTF 227
Query: 902 TSFV--VHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRM 959
+ + G+ L ++ T V+ ALI ++ G + +A VF M
Sbjct: 228 VVMLRASAGLGSARAGQQLHCCV-LKTGVVGDTFVS-CALIDMYSKCGDIEDARCVFDGM 285
Query: 960 KIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRTI 1009
P ++ + G SEEAL L EM +SG+ F +
Sbjct: 286 ----PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIM 331
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (103), Expect = 9e-06
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 962 KGPFPDFRTYSMFIGCLCKVGKSEEALELLSEM 994
KG PD TY+ I LC+ G+ +EA+ELL EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 1e-05
Identities = 62/286 (21%), Positives = 116/286 (40%), Gaps = 54/286 (18%)
Query: 228 KNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIAL-- 285
+++ +W +LV Y KA +AL ++ +M G PD + ++R+ C G D+A
Sbjct: 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT-C-GGIPDLARGR 207
Query: 286 EFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSF 345
E + + + LD+ + ++ K GDV + + D M P RD
Sbjct: 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM------PRRD--------- 252
Query: 346 CVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGK 405
C+S +M +FE G C+ G LE+ MR VD
Sbjct: 253 CISWN----------------AMISGYFEN---GECLEG-----LELF-FTMRELSVDPD 287
Query: 406 IYG----IIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCEL 461
+ I L L + + + + ++G+ S L+Q L + + ++
Sbjct: 288 LMTITSVISACELLGDERLGREMHGY--VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKV 345
Query: 462 YNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRP 507
++ M + D+V+ TAM++G+ + +A + + ME + P
Sbjct: 346 FSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 60/290 (20%), Positives = 110/290 (37%), Gaps = 62/290 (21%)
Query: 724 TWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSG----RKGRKVD-HA 778
+W +++ Y +AG + A+ ++ M G P T+ ++ + G +GR+V H
Sbjct: 154 SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHV 213
Query: 779 IKIFQEM----VNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLY 834
++ E+ VNA L+ Y+ C
Sbjct: 214 VRFGFELDVDVVNA-------LITMYVKC------------------------------- 235
Query: 835 IRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGI 894
G++ A + D + + D + ++I G + G+ E L TM++ +
Sbjct: 236 -------GDVVSARLVFDRM----PRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284
Query: 895 YPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWD 954
P + TS + E+ + + G V +LIQ + +LG EA
Sbjct: 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344
Query: 955 VFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNI 1004
VF RM+ K D +++ I K G ++ALE + M + + P I
Sbjct: 345 VFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI 390
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 12/143 (8%)
Query: 868 SLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALE----IFER 923
S + L GQ+E+AL +E+M++ + Y V FR + RA+E + R
Sbjct: 56 SQLRALCSHGQLEQALKLLESMQELRVPVDEDAY----VALFRLCEWKRAVEEGSRVCSR 111
Query: 924 MRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGK 983
V A++ F G++ AW VF +M P D ++++ +G K G
Sbjct: 112 ALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKM----PERDLFSWNVLVGGYAKAGY 167
Query: 984 SEEALELLSEMTESGIVPSNINF 1006
+EAL L M +G+ P F
Sbjct: 168 FDEALCLYHRMLWAGVRPDVYTF 190
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 3e-05
Identities = 39/191 (20%), Positives = 76/191 (39%), Gaps = 38/191 (19%)
Query: 694 IKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGC 753
+ AG D + + R+ G + +++ +M A + A+ ++ED+K+
Sbjct: 656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL 715
Query: 754 NPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLA 813
P+ ST LI +L +G ++ A+++ EM G P+
Sbjct: 716 RPTVSTMNALITALC--EGNQLPKALEVLSEMKRLGLCPNT------------------- 754
Query: 814 KSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGL 873
++YS+ + A R + + L LL + KE+ K + + + GL
Sbjct: 755 ---------------ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GL 798
Query: 874 VQRGQIEEALA 884
R + E+A A
Sbjct: 799 CLR-RFEKACA 808
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 3e-05
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 232 TWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDA 265
T+ L+ KA + +AL +F++M++ G EPD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 724 TWTIMMMQYGRAGLTEMAMRVFEDMKANGC 753
T+ ++ Y +AG E A+ +F++MK G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 6e-05
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 862 DEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFV 905
D + +LI G ++G++EEAL MK+ GI P V+ Y+ +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 6e-05
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 407 YGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFK 451
Y +I GY +K + +AL F MK+ G P TY+ L+ L K
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 6e-05
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 724 TWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPS 756
T+ ++ +AG E A+ +F++MK G P
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 970 TYSMFIGCLCKVGKSEEALELLSEMTESGI 999
TY+ I CK GK EEALEL EM E G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.8 bits (104), Expect = 1e-04
Identities = 51/260 (19%), Positives = 87/260 (33%), Gaps = 4/260 (1%)
Query: 177 LALRFFNWVKLREGFCHATETYNTMLTIAGEAKEL-ELLEELEREMEINSCAKNIKTWTI 235
L L + A L + EL E LE LE +E+ + +
Sbjct: 5 LLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLL 64
Query: 236 LVSLYGKAKLIGKALLVFEKMRKYGFEP-DAVAYKVLVRSLCNAGKGDIALEFYKEMAQK 294
L K + +AL + EK + P A A L L GK + ALE ++
Sbjct: 65 LALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL 124
Query: 295 EMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLK--SFCVSMRIR 352
+ DL+ + + +LGD + L + + + + A + R
Sbjct: 125 DPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYE 184
Query: 353 EALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIG 412
EALE + D + L G+ +ALE + + + + + +
Sbjct: 185 EALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLAL 244
Query: 413 GYLRKNDLSKALVQFERMKE 432
L +AL E+ E
Sbjct: 245 LLLELGRYEEALEALEKALE 264
|
Length = 291 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 2e-04
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 263 PDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAK 312
PD V Y L+ C GK + AL+ + EM ++ + ++ Y I+++ K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 2e-04
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 934 VTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPD 967
VTY LI G G+V EA ++F MK +G PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.1 bits (102), Expect = 2e-04
Identities = 40/241 (16%), Positives = 76/241 (31%), Gaps = 7/241 (2%)
Query: 687 SATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFE 746
+ G+ + + L + ++ + + G E A+ + E
Sbjct: 24 ALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLE 83
Query: 747 DMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCE 806
P L + L K + A+++ ++ + PD L L E
Sbjct: 84 KALELELLP-NLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYE 142
Query: 807 VGMLQLAKSCMD---VLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDE 863
+G + A + L + + L G EEAL LL++ + D
Sbjct: 143 LGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDA 202
Query: 864 FVFGSLIHGLVQRGQIEEALAKVETMKQAGIYP-TVHVYTSFVVHFFREKQVGRALEIFE 922
+L ++ G+ EEAL K + P + + + ALE E
Sbjct: 203 EALLNLGLLYLKLGKYEEALE--YYEKALELDPDNAEALYNLALLLLELGRYEEALEALE 260
Query: 923 R 923
+
Sbjct: 261 K 261
|
Length = 291 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 3e-04
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 934 VTYTALIQGFANLGKVAEAWDVFYRMKIKG 963
VTY +LI G+ GK+ EA ++F MK KG
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 4e-04
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 441 TYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDS 474
TY L+ L K ++ EL+ EM +RGI+PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 8e-04
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 260 GFEPDAVAYKVLVRSLCNAGKGDIALEFYKEM 291
G +PD V Y L+ LC AG+ D A+E EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.001
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 969 RTYSMFIGCLCKVGKSEEALELLSEMTESGIVP 1001
TY+ + L K G + AL +L EM SG+ P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Query: 869 LIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQE- 927
L+ G V G+ A+ M ++G+ P + S + R V + LE F M ++
Sbjct: 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY 619
Query: 928 GCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPD 967
P + Y ++ GK+ EA++ +M I PD
Sbjct: 620 SITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT---PD 656
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.002
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 899 HVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTV 933
Y + + + +V ALE+F+ M++ G EP V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.002
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 232 TWTILVSLYGKAKLIGKALLVFEKMRKYGF 261
T+ L+S Y KA + +AL +F++M++ G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1038 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.9 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.79 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.77 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.77 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.76 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.76 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.75 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.75 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.74 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.73 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.7 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.69 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.64 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.58 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.56 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.47 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.46 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.46 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.43 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.43 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.41 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.4 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.39 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.39 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.38 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.38 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.38 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.36 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.34 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.33 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.32 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.31 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.31 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.31 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.29 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.26 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.24 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.24 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.24 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.24 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.23 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.22 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.22 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.2 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.18 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.18 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.16 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.13 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.12 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.11 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.1 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.1 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.08 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.07 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.05 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.03 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.96 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.94 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.93 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.93 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.92 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.92 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.89 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.88 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.88 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.87 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.82 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.81 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.8 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.78 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.77 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.71 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.68 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.64 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.59 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.59 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.5 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.45 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.43 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.42 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.42 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.38 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.36 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.34 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.33 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.3 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.3 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.29 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.28 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.27 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.27 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.26 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.25 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.24 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.24 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.22 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.2 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.19 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.17 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.15 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.14 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.13 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.12 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.12 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.08 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.08 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.07 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.07 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.05 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.04 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.02 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.95 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.92 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.83 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.78 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.75 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.75 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.74 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.72 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.64 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.61 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.6 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.58 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.58 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.49 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.45 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.39 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.38 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.37 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.34 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.32 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.32 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.29 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.26 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.24 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.23 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.22 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.21 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.17 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.15 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.11 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.07 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.03 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.02 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.01 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.0 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.95 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.88 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.86 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.85 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.84 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.83 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.82 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.82 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.81 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.8 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.79 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.75 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.74 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.73 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.72 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.69 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.68 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.66 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.66 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.55 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.49 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.46 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.44 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.34 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.32 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.32 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.31 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.31 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.14 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.14 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.14 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.13 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.13 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.94 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.93 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.87 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.84 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.47 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.47 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.42 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.42 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.36 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.34 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.32 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.31 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.3 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.29 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.23 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.19 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.18 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.16 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.09 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.09 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.03 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.01 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 94.99 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.78 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.73 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.64 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.51 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.41 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.39 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.27 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.03 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.0 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.97 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.96 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.94 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.64 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.55 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 93.55 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.5 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.38 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.31 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.31 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.3 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.28 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.14 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.1 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.02 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.97 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.94 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.58 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.3 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.17 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.96 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.82 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.69 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 91.67 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 91.59 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.56 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.36 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.32 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 91.26 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.21 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 91.09 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 91.06 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 90.99 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 90.61 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 90.56 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 90.34 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.01 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 89.92 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 89.86 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 89.67 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 89.31 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 89.25 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 89.24 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 89.08 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.87 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 88.33 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.18 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 88.18 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.93 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 87.56 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 87.27 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 86.76 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 86.6 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.01 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 85.37 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 85.04 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 84.51 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 84.21 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 84.13 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 83.55 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 82.94 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 82.25 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 82.07 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 81.76 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 81.67 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 80.85 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 80.14 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-82 Score=784.67 Aligned_cols=678 Identities=17% Similarity=0.193 Sum_probs=645.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001645 192 CHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVL 271 (1038)
Q Consensus 192 ~~~~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 271 (1038)
.++..++|.++..|.+.|++++|..+|+.|.+.|++|+..+|..++.+|.+.+..+.|..++..+.+.|..++...+|.|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 001645 272 VRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRI 351 (1038)
Q Consensus 272 l~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 351 (1038)
+.+|++.|+.+.|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|...|+.||..||+.++++++..+++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 9999999999999999999964 688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 001645 352 REALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMK 431 (1038)
Q Consensus 352 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 431 (1038)
..+.+++..|.+.|+.||..+++.||.+|++.|++++|.++|++|...+. .+||++|.+|++.|++++|+++|.+|.
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~---~s~n~li~~~~~~g~~~eAl~lf~~M~ 280 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC---ISWNAMISGYFENGECLEGLELFFTMR 280 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCc---chhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986544 569999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 001645 432 ESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKS 511 (1038)
Q Consensus 432 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 511 (1038)
..|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|.. ||..+
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s 356 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVS 356 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999974 78999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCC
Q 001645 512 YSVFIKELCRVSRTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQ 591 (1038)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (1038)
|+.+|.+|++.|++++|+++|++|.+.|+.||..||..++.+|++.|+.+.+.++.+..
T Consensus 357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~--------------------- 415 (857)
T PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA--------------------- 415 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH---------------------
Confidence 99999999999999999999999999999999999999999999999988776443211
Q ss_pred CCCccccccccccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHH
Q 001645 592 GPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAAL 671 (1038)
Q Consensus 592 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 671 (1038)
T Consensus 416 -------------------------------------------------------------------------------- 415 (857)
T PLN03077 416 -------------------------------------------------------------------------------- 415 (857)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 001645 672 HFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKAN 751 (1038)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 751 (1038)
...|+.++..+||.++.+|++.|++++|.++|++|.+ +|..+|+.||.+|++.|+.++|+.+|++|..
T Consensus 416 -------~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~- 483 (857)
T PLN03077 416 -------ERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL- 483 (857)
T ss_pred -------HHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 1235678889999999999999999999999999975 4888999999999999999999999999986
Q ss_pred CCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchH
Q 001645 752 GCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSY 831 (1038)
Q Consensus 752 g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 831 (1038)
++.||..||+.++.+|+ +.|.++.+.+++..+.+.|+.+|..++++++++|+++|++++|.++|+.+ .++..+|
T Consensus 484 ~~~pd~~t~~~lL~a~~--~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~ 557 (857)
T PLN03077 484 TLKPNSVTLIAALSACA--RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSW 557 (857)
T ss_pred CCCCCHhHHHHHHHHHh--hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhH
Confidence 59999999999999999 45799999999999999999999999999999999999999999999987 4567899
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCccHhhHHHHHHHHHh
Q 001645 832 SLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMK-QAGIYPTVHVYTSFVVHFFR 910 (1038)
Q Consensus 832 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~y~~li~~~~~ 910 (1038)
|++|.+|++.|+.++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|. +.|+.|+..+|++++++|++
T Consensus 558 n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r 637 (857)
T PLN03077 558 NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR 637 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999 68999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 001645 911 EKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALEL 990 (1038)
Q Consensus 911 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l 990 (1038)
.|++++|.+++++|. ++||..+|++|+.+|...|+.+.|+...+++.+..|. +...|..|.+.|+..|+|++|.++
T Consensus 638 ~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~-~~~~y~ll~n~ya~~g~~~~a~~v 713 (857)
T PLN03077 638 AGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPN-SVGYYILLCNLYADAGKWDEVARV 713 (857)
T ss_pred CCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CcchHHHHHHHHHHCCChHHHHHH
Confidence 999999999999994 7999999999999999999999999999999998777 888999999999999999999999
Q ss_pred HHHHHHCCCCCCh
Q 001645 991 LSEMTESGIVPSN 1003 (1038)
Q Consensus 991 ~~~m~~~g~~p~~ 1003 (1038)
.+.|++.|++++.
T Consensus 714 r~~M~~~g~~k~~ 726 (857)
T PLN03077 714 RKTMRENGLTVDP 726 (857)
T ss_pred HHHHHHcCCCCCC
Confidence 9999999999754
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-74 Score=717.57 Aligned_cols=661 Identities=15% Similarity=0.193 Sum_probs=624.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHH
Q 001645 227 AKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIV 306 (1038)
Q Consensus 227 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 306 (1038)
+++..+++.++.+|++.|++++|+.+|+.|.+.|+.|+..+|..++.+|.+.+.++.+..++..+.+.+..++..++|.+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 001645 307 MNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRI 386 (1038)
Q Consensus 307 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 386 (1038)
+.+|++.|+++.|.++|++|. .||..+|+.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.+++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 999999999999999999995 4899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 001645 387 SDALEIVDIMMRRNLV-DGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEM 465 (1038)
Q Consensus 387 ~~A~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m 465 (1038)
+.+.+++..|.+.+.. +..+||.+|.+|++.|+++.|.++|++|. .||..+|+.+|.+|++.|++++|.++|.+|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M 279 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTM 279 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999998876 67899999999999999999999999997 579999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 001645 466 LKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASKIVIGDE 545 (1038)
Q Consensus 466 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 545 (1038)
.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||..
T Consensus 280 ~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~ 355 (857)
T PLN03077 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAV 355 (857)
T ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 47889
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCCChhhHH
Q 001645 546 IFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLH 625 (1038)
Q Consensus 546 ~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (1038)
+|+.++.+|++.|+.+.+.++.+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~--------------------------------------------------------- 378 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYA--------------------------------------------------------- 378 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHH---------------------------------------------------------
Confidence 99999999999999887664321
Q ss_pred HHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhh
Q 001645 626 EICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKH 705 (1038)
Q Consensus 626 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 705 (1038)
.+ ...++.||..+|+.++.+|++.|+++.
T Consensus 379 --------------------------------------------------~M-~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 407 (857)
T PLN03077 379 --------------------------------------------------LM-EQDNVSPDEITIASVLSACACLGDLDV 407 (857)
T ss_pred --------------------------------------------------HH-HHhCCCCCceeHHHHHHHHhccchHHH
Confidence 11 124677999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHH
Q 001645 706 MRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEM 785 (1038)
Q Consensus 706 a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m 785 (1038)
|.++++.|.+.|+.|+..+||.||.+|++.|++++|.++|++|.+ +|..+|+.+|.+++ +.++.++|+.+|++|
T Consensus 408 a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~--~~g~~~eA~~lf~~m 481 (857)
T PLN03077 408 GVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLR--LNNRCFEALIFFRQM 481 (857)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHH--HCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999974 78999999999999 567999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHH
Q 001645 786 VNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTV-PLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEF 864 (1038)
Q Consensus 786 ~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 864 (1038)
.. ++.||..+|+.++.+|++.|+++.+.+++..+.+.|... ...+|+|+++|+++|++++|.++|+++ .||..
T Consensus 482 ~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~ 555 (857)
T PLN03077 482 LL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVV 555 (857)
T ss_pred Hh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChh
Confidence 86 599999999999999999999999999999999999864 578999999999999999999999987 58999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHH
Q 001645 865 VFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMR-QEGCEPTVVTYTALIQGF 943 (1038)
Q Consensus 865 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~-~~g~~pd~~~~~~li~~~ 943 (1038)
+||+||.+|++.|+.++|+++|++|.+.|+.||.+||++++.+|++.|++++|.++|++|. +.|+.|+..+|++++++|
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 679999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhcHHHHHHHHhccCChhhh
Q 001645 944 ANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPS-NINFRTIFFGLNREDNLYQI 1022 (1038)
Q Consensus 944 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~~ 1022 (1038)
++.|++++|.+++++|. ..||..+|++|+.+|...|+.+.|....+++.+ +.|+ ...|..+.+.|...|+++++
T Consensus 636 ~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a 710 (857)
T PLN03077 636 GRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEV 710 (857)
T ss_pred HhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHH
Confidence 99999999999999983 789999999999999999999999999888886 5674 56677777899999999984
Q ss_pred hc
Q 001645 1023 TK 1024 (1038)
Q Consensus 1023 ~~ 1024 (1038)
.+
T Consensus 711 ~~ 712 (857)
T PLN03077 711 AR 712 (857)
T ss_pred HH
Confidence 43
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-65 Score=616.35 Aligned_cols=546 Identities=15% Similarity=0.207 Sum_probs=408.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHH
Q 001645 227 AKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGF-EPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKI 305 (1038)
Q Consensus 227 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 305 (1038)
.++...|..++..+++.|++++|+++|+.|.+.|+ .++..+++.++.+|++.|.+++|.++|+.|.. ||..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 44566666666667777777777777777776663 45566666667777777777777777766643 66777777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 001645 306 VMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGR 385 (1038)
Q Consensus 306 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 385 (1038)
+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHcCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 001645 386 ISDALEIVDIMMRRNLV-DGKIYGIIIGGYLRKNDLSKALVQFERMKE--SGYLPMASTYTELMQHLFKLNEYKKGCELY 462 (1038)
Q Consensus 386 ~~~A~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~ 462 (1038)
+++|.++|++|...+.. +..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77777777777666654 456677777777777777777777777765 467778888888888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 001645 463 NEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASKIVI 542 (1038)
Q Consensus 463 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 542 (1038)
+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 88888777788888888888888888888888888888877888888888888888888888888888888877766655
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCCChh
Q 001645 543 GDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQ 622 (1038)
Q Consensus 543 ~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (1038)
+..+|+
T Consensus 683 d~~tyn-------------------------------------------------------------------------- 688 (1060)
T PLN03218 683 GTVSYS-------------------------------------------------------------------------- 688 (1060)
T ss_pred CHHHHH--------------------------------------------------------------------------
Confidence 544444
Q ss_pred hHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCC
Q 001645 623 DLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKD 702 (1038)
Q Consensus 623 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 702 (1038)
.+|.+|++.|+
T Consensus 689 ---------------------------------------------------------------------sLI~ay~k~G~ 699 (1060)
T PLN03218 689 ---------------------------------------------------------------------SLMGACSNAKN 699 (1060)
T ss_pred ---------------------------------------------------------------------HHHHHHHhCCC
Confidence 44444445555
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHH
Q 001645 703 FKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIF 782 (1038)
Q Consensus 703 ~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~ 782 (1038)
+++|.++|++|...|+.||..+||.||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+ +.|++++|.++|
T Consensus 700 ~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~--k~G~le~A~~l~ 777 (1060)
T PLN03218 700 WKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE--RKDDADVGLDLL 777 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HCCCHHHHHHHH
Confidence 666777888888888888888888888888888888888888888888888888888888888877 456888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC
Q 001645 783 QEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLD 862 (1038)
Q Consensus 783 ~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 862 (1038)
.+|.+.|+.||..+|++++.+|.+ +++++..+.+.+...+.. ......+..++|+.+|++|.+.|+.||
T Consensus 778 ~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~g---------~~~~~n~w~~~Al~lf~eM~~~Gi~Pd 846 (1060)
T PLN03218 778 SQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDSG---------RPQIENKWTSWALMVYRETISAGTLPT 846 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhcc---------ccccccchHHHHHHHHHHHHHCCCCCC
Confidence 888888888888888888866542 455555444333322111 111112334679999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 001645 863 EFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVV 934 (1038)
Q Consensus 863 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 934 (1038)
..||+.++.++++.+..+.+..+++.|...+..|+..+|++||++|++. .++|..+|++|...|+.|+..
T Consensus 847 ~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 847 MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 9999999999889999999999999999888899999999999998543 478999999999999999886
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-65 Score=614.18 Aligned_cols=524 Identities=17% Similarity=0.278 Sum_probs=459.8
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHH
Q 001645 331 QIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEI-SMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGI 409 (1038)
Q Consensus 331 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 409 (1038)
..++...|..++..+++.|++++|+++|++|.+.|+ .++..+++.++..|++.|.+++|.++|+.|.. ++..+|+.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~ 442 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNM 442 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHH
Confidence 345666788888888888888888888888888885 45677778888888888888888888888875 56778888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 001645 410 IIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDN 489 (1038)
Q Consensus 410 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 489 (1038)
++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999989999999999999988888899999999999999999999999999999888888899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 001645 490 LSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQA--SKIVIGDEIFHWVISCMEKKGEMESVEKVK 567 (1038)
Q Consensus 490 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~g~~~~~~~~~ 567 (1038)
+++|.++|++|...|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~-------------------------- 576 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID-------------------------- 576 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC--------------------------
Confidence 999999999998888889999999999999999999999999988865 3333
Q ss_pred HHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHHHhhc
Q 001645 568 RMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKC 647 (1038)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 647 (1038)
T Consensus 577 -------------------------------------------------------------------------------- 576 (1060)
T PLN03218 577 -------------------------------------------------------------------------------- 576 (1060)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHH
Q 001645 648 AVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTI 727 (1038)
Q Consensus 648 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~ 727 (1038)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|++
T Consensus 577 -------------------------------------PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyns 619 (1060)
T PLN03218 577 -------------------------------------PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619 (1060)
T ss_pred -------------------------------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHH
Confidence 4455666666666777778888899999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001645 728 MMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEV 807 (1038)
Q Consensus 728 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~ 807 (1038)
+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+++ +.|++++|.++|++|.+.|+.||..+|+++|.+|+++
T Consensus 620 LI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~--k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~ 697 (1060)
T PLN03218 620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG--HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697 (1060)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999988 4578999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCC-CcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001645 808 GMLQLAKSCMDVLRKVGFT-VPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKV 886 (1038)
Q Consensus 808 g~~~~A~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~ 886 (1038)
|++++|.++|+.|.+.+.. +..+||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|
T Consensus 698 G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~ 777 (1060)
T PLN03218 698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999887765 457899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCccHhhHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001645 887 ETMKQAGIYPTVHVYTSFVVHFFR----E-------------------KQVGRALEIFERMRQEGCEPTVVTYTALIQGF 943 (1038)
Q Consensus 887 ~~m~~~g~~p~~~~y~~li~~~~~----~-------------------g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 943 (1038)
++|.+.|+.||..+|++|+..|.+ + +..++|..+|++|++.|+.||..||+.++.++
T Consensus 778 ~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl 857 (1060)
T PLN03218 778 SQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCL 857 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Confidence 999999999999999999876532 1 23468999999999999999999999999888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh
Q 001645 944 ANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNI 1004 (1038)
Q Consensus 944 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 1004 (1038)
++.+..+.+..+++.|...+..|+..+|+++++++++. .++|+.++++|...|+.|+..
T Consensus 858 ~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 858 QLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred cccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 89999999999999999888889999999999998543 378999999999999999875
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-59 Score=562.80 Aligned_cols=471 Identities=18% Similarity=0.239 Sum_probs=356.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001645 302 LYKIVMNCAAKLGDVDAVLSIADDMVRIS-QIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGL 380 (1038)
Q Consensus 302 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 380 (1038)
+|+.+|.++.+.|++++|.++|+.|...+ ..||..+|+.++.++++.++++.|.+++..|.+.|+.||..+|+.|+.+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 33333334444444444444444443322 33455555555555555566666666666666667777777777777777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 001645 381 CIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCE 460 (1038)
Q Consensus 381 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 460 (1038)
++.|++++|.++|++|.+. +..+||.+|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|.+.|..+.+.+
T Consensus 169 ~k~g~~~~A~~lf~~m~~~---~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 245 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPER---NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQ 245 (697)
T ss_pred hcCCCHHHHHHHHhcCCCC---CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHH
Confidence 7777777777777777653 3445888888888888888888888888888888999999999999988888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 001645 461 LYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASKI 540 (1038)
Q Consensus 461 l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 540 (1038)
++..+.+.|+.||..+|++|+++|+++|++++|.++|++|.. +|..+||.||.+|++.|+.++|+++|++|.+
T Consensus 246 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~--- 318 (697)
T PLN03081 246 LHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRD--- 318 (697)
T ss_pred HHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHH---
Confidence 888888888888888888888888888888888888877753 3555555555555555544444444433322
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCCC
Q 001645 541 VIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYC 620 (1038)
Q Consensus 541 ~p~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1038)
T Consensus 319 -------------------------------------------------------------------------------- 318 (697)
T PLN03081 319 -------------------------------------------------------------------------------- 318 (697)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcC
Q 001645 621 EQDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRG 700 (1038)
Q Consensus 621 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 700 (1038)
T Consensus 319 -------------------------------------------------------------------------------- 318 (697)
T PLN03081 319 -------------------------------------------------------------------------------- 318 (697)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHH
Q 001645 701 KDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIK 780 (1038)
Q Consensus 701 ~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~ 780 (1038)
.|+.||..||++++.+|++.|.+++|.+++.
T Consensus 319 ---------------~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~---------------------------------- 349 (697)
T PLN03081 319 ---------------SGVSIDQFTFSIMIRIFSRLALLEHAKQAHA---------------------------------- 349 (697)
T ss_pred ---------------cCCCCCHHHHHHHHHHHHhccchHHHHHHHH----------------------------------
Confidence 2233444555555555555555555555544
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC
Q 001645 781 IFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSK 860 (1038)
Q Consensus 781 ~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 860 (1038)
.|.+.|+.||..++++++++|+++|++++|.++|+.|.+ ++..+||+||.+|++.|+.++|+++|++|.+.|+.
T Consensus 350 ---~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 350 ---GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred ---HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 444555555555555556666666666666666665543 24589999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 001645 861 LDEFVFGSLIHGLVQRGQIEEALAKVETMKQ-AGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTAL 939 (1038)
Q Consensus 861 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 939 (1038)
||..||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++| ++.||..+|++|
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~L 500 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAAL 500 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHH
Confidence 9999999999999999999999999999986 799999999999999999999999999999877 578999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 001645 940 IQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVP 1001 (1038)
Q Consensus 940 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p 1001 (1038)
+.+|...|+++.|..+++++.+.++. +..+|+.|+++|++.|+|++|.+++++|.+.|+++
T Consensus 501 l~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 501 LTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999877665 67899999999999999999999999999999863
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-58 Score=553.86 Aligned_cols=474 Identities=17% Similarity=0.175 Sum_probs=408.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001645 193 HATETYNTMLTIAGEAKELELLEELEREMEINS-CAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVL 271 (1038)
Q Consensus 193 ~~~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 271 (1038)
.+..+|+.+|..+.+.|++++|.++|+.|...+ +.||..+|+.++.+|++.++++.|..++..|.+.|+.||..+||.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 455689999999999999999999999998764 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 001645 272 VRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRI 351 (1038)
Q Consensus 272 l~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 351 (1038)
+.+|++.|+++.|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|.+.|..|+..+|+.++.++++.|+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 9999999999999999999964 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 001645 352 REALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMK 431 (1038)
Q Consensus 352 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 431 (1038)
+.+.+++..+.+.|+.||..+|+.||++|++.|++++|.++|+.|... +..+||.||.+|++.|+.++|+++|++|.
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~---~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK---TTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC---ChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999765 45679999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 001645 432 ESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKS 511 (1038)
Q Consensus 432 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 511 (1038)
+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|+++|++++|.++|++|.+ ||..+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999975 68999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCC
Q 001645 512 YSVFIKELCRVSRTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQ 591 (1038)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (1038)
||.||.+|++.|+.++|+++|++|.+.|+.||..||..++.+|++
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~----------------------------------- 438 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY----------------------------------- 438 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc-----------------------------------
Confidence 999999999999999999999999888777766666555555443
Q ss_pred CCCccccccccccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHH
Q 001645 592 GPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAAL 671 (1038)
Q Consensus 592 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 671 (1038)
T Consensus 439 -------------------------------------------------------------------------------- 438 (697)
T PLN03081 439 -------------------------------------------------------------------------------- 438 (697)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001645 672 HFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRR-NGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKA 750 (1038)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 750 (1038)
.|++++|.++|+.|.+ .|+.|+..+|+.|+.+|++.|++++|.+++++|
T Consensus 439 ----------------------------~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-- 488 (697)
T PLN03081 439 ----------------------------SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-- 488 (697)
T ss_pred ----------------------------CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC--
Confidence 3344556667777754 467777777777777777777777777666543
Q ss_pred cCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcch
Q 001645 751 NGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLS 830 (1038)
Q Consensus 751 ~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 830 (1038)
++.|+..+|+.++.+ |+..|+++.|..+++.+.+.++.+..+
T Consensus 489 -~~~p~~~~~~~Ll~a-------------------------------------~~~~g~~~~a~~~~~~l~~~~p~~~~~ 530 (697)
T PLN03081 489 -PFKPTVNMWAALLTA-------------------------------------CRIHKNLELGRLAAEKLYGMGPEKLNN 530 (697)
T ss_pred -CCCCCHHHHHHHHHH-------------------------------------HHHcCCcHHHHHHHHHHhCCCCCCCcc
Confidence 334555555555444 444455555555555554444445567
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCC
Q 001645 831 YSLYIRALCRAGELEEALALLDEVKEERSK 860 (1038)
Q Consensus 831 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 860 (1038)
|+.|+++|++.|++++|.+++++|.+.|++
T Consensus 531 y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 531 YVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 888888888888888888888888888875
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=378.54 Aligned_cols=782 Identities=12% Similarity=0.049 Sum_probs=573.2
Q ss_pred cCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001645 173 KVPHLALRFFNWVKLREGFCHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLV 252 (1038)
Q Consensus 173 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 252 (1038)
..++.|...+.-... .........+..+..++...|++++|...|+.+.+.. +.+..++..+...+...|++++|..+
T Consensus 104 g~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 181 (899)
T TIGR02917 104 GKFQQVLDELPGKTL-LDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDEARAL 181 (899)
T ss_pred CCHHHHHHhhccccc-CCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHHHHHH
Confidence 345556665543311 1222345667777777788888888888888887665 55677788888888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 001645 253 FEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQI 332 (1038)
Q Consensus 253 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 332 (1038)
++.+.+.. +++...+..+...+...|+++.|...|++..+.+. .+..++..++..+...|++++|...++.+.+....
T Consensus 182 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 259 (899)
T TIGR02917 182 IDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRP-NNPAVLLALATILIEAGEFEEAEKHADALLKKAPN 259 (899)
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 88887654 55667777788888888888888888888876543 35667777888888888888888888888775432
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHH
Q 001645 333 PERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIG 412 (1038)
Q Consensus 333 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 412 (1038)
+...+......+...|++++|...++++.+.+.. +...+..+...+...|++++|...|+.+.+..+.+...+..+..
T Consensus 260 -~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~ 337 (899)
T TIGR02917 260 -SPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLAS 337 (899)
T ss_pred -CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 1222333344455678888888888877765543 23344455566777888888888888887777766667777777
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001645 413 GYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSE 492 (1038)
Q Consensus 413 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 492 (1038)
.+...|++++|...+..+.... +.+...+..+...+...|++++|.++|+.+.+.. +.+...+..+...+...|++++
T Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 415 (899)
T TIGR02917 338 IQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSE 415 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHH
Confidence 8888888888888888776653 3456677777777888888888888888877653 2355667777777778888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHhhh
Q 001645 493 AWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGI 572 (1038)
Q Consensus 493 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~ 572 (1038)
|...|+.+...... ....+..++..+.+.|++++|+++++++... .+.+..++..+...+...|+.+.+....+..-.
T Consensus 416 A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 493 (899)
T TIGR02917 416 AIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALS 493 (899)
T ss_pred HHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 88888877765422 3344556667777788888888888877653 334556677777777777777776654321100
Q ss_pred hcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHHHhh----cc
Q 001645 573 CKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEK----CA 648 (1038)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~ 648 (1038)
..+ ........+..+......+......++. .+
T Consensus 494 --~~~-----------------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 530 (899)
T TIGR02917 494 --IEP-----------------------------------------DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP 530 (899)
T ss_pred --hCC-----------------------------------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 000 0001111222222222333222222111 11
Q ss_pred CCCCHHHHHHHH--HccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHH
Q 001645 649 VQYTPELVLEIL--HNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWT 726 (1038)
Q Consensus 649 ~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~ 726 (1038)
. +......+. .........++..+...... .+.+...+..++..+...|++++|..+++.+.+..+. +..+|.
T Consensus 531 ~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 605 (899)
T TIGR02917 531 K--NLRAILALAGLYLRTGNEEEAVAWLEKAAEL--NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD-SPEAWL 605 (899)
T ss_pred C--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHH
Confidence 1 111111111 11122334455555444322 3445677888999999999999999999999876544 788999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 001645 727 IMMMQYGRAGLTEMAMRVFEDMKANGCNPS-GSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLC 805 (1038)
Q Consensus 727 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~ 805 (1038)
.+...|.+.|++++|+..|+.+.+.. |+ ...+..+...+. ..+++++|...++++.+.. ..+..++..++..+.
T Consensus 606 ~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 606 MLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYA--VMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLL 680 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 99999999999999999999998753 44 344444444444 4569999999999998864 335778889999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001645 806 EVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAK 885 (1038)
Q Consensus 806 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~ 885 (1038)
..|++++|.++++.+.+..+..+..+..+...+...|++++|++.|+++.+.+ |+..++..+..++.+.|++++|...
T Consensus 681 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999998888899999999999999999999999999864 5557888899999999999999999
Q ss_pred HHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001645 886 VETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 886 ~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 965 (1038)
++.+.+.. +.+...++.+...|...|+.++|.+.|+++.+.. +++...++.+...+.+.|+ .+|+.+++++.+..+.
T Consensus 759 ~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 759 LEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN 835 (899)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC
Confidence 99998764 6778899999999999999999999999999864 5678899999999999999 8899999999998776
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHhccCChhhhhc
Q 001645 966 PDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRTIFFGLNREDNLYQITK 1024 (1038)
Q Consensus 966 ~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~~~~ 1024 (1038)
++.++..++.+|...|++++|.+.++++.+.+.. +..++..+...+.+.|+.+++.+
T Consensus 836 -~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 836 -IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred -CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHH
Confidence 7888999999999999999999999999986543 88899999999999999999654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=372.82 Aligned_cols=753 Identities=13% Similarity=0.031 Sum_probs=536.5
Q ss_pred cCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001645 173 KVPHLALRFFNWVKLREGFCHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLV 252 (1038)
Q Consensus 173 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 252 (1038)
..++.|...|+-+....+ .+...+..+...+...|++++|.++++.+.+.. +.+...+..+...+...|++++|...
T Consensus 139 ~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~ 215 (899)
T TIGR02917 139 GQLELAQKSYEQALAIDP--RSLYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAA 215 (899)
T ss_pred CCHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 345667777776643322 345566777777777888888888888777654 66777777777777788888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 001645 253 FEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQI 332 (1038)
Q Consensus 253 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 332 (1038)
|+...+.. +.+..++..+...+...|++++|...++.+.+.... +...+......+...|++++|...|+++.+.+
T Consensus 216 ~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-- 291 (899)
T TIGR02917 216 YRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSA-- 291 (899)
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--
Confidence 88777654 445667777777777888888888888777765432 23333344445566777777777777776644
Q ss_pred CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHH
Q 001645 333 PE-RDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIII 411 (1038)
Q Consensus 333 p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 411 (1038)
|+ ...+..+...+...|++++|...++.+.+.... +...+..+...+.+.|++++|...++.+...++.+...+..+.
T Consensus 292 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 370 (899)
T TIGR02917 292 PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPN-SHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLG 370 (899)
T ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 32 223344455666777777777777777665433 4556666777777777777777777777776666666777777
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 001645 412 GGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLS 491 (1038)
Q Consensus 412 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 491 (1038)
..+.+.|++++|.++|+++.... +.+...+..+...+...|++++|.+.+..+.+.... .......++..+.+.|+++
T Consensus 371 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 448 (899)
T TIGR02917 371 EAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFD 448 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHH
Confidence 77777777777777777776543 224555666666677777777777777777665422 2334455666777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHH-Hh
Q 001645 492 EAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKVKR-MQ 570 (1038)
Q Consensus 492 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~~~~~~-~~ 570 (1038)
+|..+++.+.... +++..+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|+.+.+.+..+ +.
T Consensus 449 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 449 KALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred HHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777777776543 3456667777777777777777777777776542 2233445556666666777666554321 11
Q ss_pred hhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHH----Hhh
Q 001645 571 GICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQES----LEK 646 (1038)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~ 646 (1038)
... + .+......+..++.....+...... ++.
T Consensus 527 ~~~---~-----------------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 527 TID---P-----------------------------------------KNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred HhC---c-----------------------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 000 0 0001111222222222222221111 111
Q ss_pred ccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHH
Q 001645 647 CAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWT 726 (1038)
Q Consensus 647 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~ 726 (1038)
.+.....................++..+.... ...+.+...|..+...+...|++++|...|+.+.+..+. ++..+.
T Consensus 563 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 639 (899)
T TIGR02917 563 NPQEIEPALALAQYYLGKGQLKKALAILNEAA--DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALL 639 (899)
T ss_pred CccchhHHHHHHHHHHHCCCHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHH
Confidence 22222211111111122233345555555443 234567789999999999999999999999999887654 778899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 001645 727 IMMMQYGRAGLTEMAMRVFEDMKANGCNPS-GSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLC 805 (1038)
Q Consensus 727 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~ 805 (1038)
.+...|.+.|++++|...|+++.+. .|+ ..++..+...+. ..|++++|..+++.+.+.. ..+...+..+..++.
T Consensus 640 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 714 (899)
T TIGR02917 640 LLADAYAVMKNYAKAITSLKRALEL--KPDNTEAQIGLAQLLL--AAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYL 714 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHH
Confidence 9999999999999999999999875 344 555666666555 4579999999999998876 346677888999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001645 806 EVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAK 885 (1038)
Q Consensus 806 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~ 885 (1038)
..|++++|.+.+..+....+.+ .++..++..+.+.|++++|.+.++++.+. .+.+...+..+...|...|+.++|...
T Consensus 715 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~ 792 (899)
T TIGR02917 715 RQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKH 792 (899)
T ss_pred HCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 9999999999999999988766 56778899999999999999999999986 356788999999999999999999999
Q ss_pred HHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001645 886 VETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 886 ~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 965 (1038)
|+++.+.+ +++..+++.+...+...|+ .+|+.+++++.+.. +-+..++..+...+.+.|++++|.++++++.+.++.
T Consensus 793 ~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 793 YRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999865 6788999999999999999 88999999998752 335677888999999999999999999999999887
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001645 966 PDFRTYSMFIGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 966 ~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
++.++..++.+|.+.|++++|.+++++|+
T Consensus 870 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 870 -AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99999999999999999999999999986
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-23 Score=267.50 Aligned_cols=648 Identities=13% Similarity=0.071 Sum_probs=421.3
Q ss_pred cCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH----------------HHH
Q 001645 173 KVPHLALRFFNWVKLREGFCHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTW----------------TIL 236 (1038)
Q Consensus 173 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~----------------~~l 236 (1038)
.+.+.|.+.+.-+..... -++..+..++.++.+.|+.++|.+.++.+.+.. |.+...+ ..+
T Consensus 42 ~~~d~a~~~l~kl~~~~p--~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (1157)
T PRK11447 42 HREDLVRQSLYRLELIDP--NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQ 118 (1157)
T ss_pred CChHHHHHHHHHHHccCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHH
Confidence 445667666665543221 257778888888999999999999999998875 5454443 233
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCC
Q 001645 237 VSLYGKAKLIGKALLVFEKMRKYGFEPDAV-AYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGD 315 (1038)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 315 (1038)
...+.+.|++++|+..|+.+.+.+ +|+.. ....+.......|++++|.+.|+++.+.... +...+..+...+...|+
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCC
Confidence 446788899999999999988654 34432 1111122223468999999999999887433 66778888888999999
Q ss_pred hhHHHHHHHHHHHcCCCCC--hhh-----------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001645 316 VDAVLSIADDMVRISQIPE--RDA-----------------YGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETL 376 (1038)
Q Consensus 316 ~~~a~~~~~~m~~~~~~p~--~~~-----------------~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 376 (1038)
.++|+..++++........ ... +...+..+-.....+.|...+.++......|+... ...
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~ 275 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQ 275 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHH
Confidence 9999999998865321100 000 11111111122234455555555544433333322 233
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHH------------
Q 001645 377 VKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLP-MASTYT------------ 443 (1038)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~------------ 443 (1038)
...+...|++++|...|++..+.++.+..++..+...|.+.|++++|+..|++..+..... ....+.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 5567778889999999988888888888888888888888999999999888887653221 111111
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 001645 444 ELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVS 523 (1038)
Q Consensus 444 ~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 523 (1038)
.....+.+.|++++|...++++++.. +.+...+..+...|...|++++|.+.|++..+... .+...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hc
Confidence 12334567788888888888887763 23556667777888888888888888888776532 23455555555553 45
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccccc
Q 001645 524 RTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEME 603 (1038)
Q Consensus 524 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 603 (1038)
+.++|+.+++.+...... .......
T Consensus 433 ~~~~A~~~l~~l~~~~~~----~~~~~~~--------------------------------------------------- 457 (1157)
T PRK11447 433 SPEKALAFIASLSASQRR----SIDDIER--------------------------------------------------- 457 (1157)
T ss_pred CHHHHHHHHHhCCHHHHH----HHHHHHH---------------------------------------------------
Confidence 677777776654321000 0000000
Q ss_pred cccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCC
Q 001645 604 RKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADY 683 (1038)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 683 (1038)
T Consensus 458 -------------------------------------------------------------------------------- 457 (1157)
T PRK11447 458 -------------------------------------------------------------------------------- 457 (1157)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 001645 684 SHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYL 763 (1038)
Q Consensus 684 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 763 (1038)
.-....+..+...+...|++++|...|++..+..+. ++..+..+...|.+.|++++|...|+++.+. .|+.......
T Consensus 458 ~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a 534 (1157)
T PRK11447 458 SLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYA 534 (1157)
T ss_pred HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHH
Confidence 000123445566777889999999999999887765 7778888999999999999999999998875 4544333333
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCC
Q 001645 764 IISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGE 843 (1038)
Q Consensus 764 l~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 843 (1038)
...+.. ..++.++|+..++.+......++...+.. .+.. ..+..+...+...|+
T Consensus 535 ~al~l~-~~~~~~~Al~~l~~l~~~~~~~~~~~l~~-------------------~l~~------~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 535 YGLYLS-GSDRDRAALAHLNTLPRAQWNSNIQELAQ-------------------RLQS------DQVLETANRLRDSGK 588 (1157)
T ss_pred HHHHHH-hCCCHHHHHHHHHhCCchhcChhHHHHHH-------------------HHhh------hHHHHHHHHHHHCCC
Confidence 322222 45689999998887654332222111100 0000 012234566677788
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001645 844 LEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFER 923 (1038)
Q Consensus 844 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~ 923 (1038)
.++|+++++. .+.+...+..+...+.+.|+.++|+..|++..+.. +.+...+..++..|...|+.++|++.++.
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888877762 23455566677777888888888888888877653 44567777888888888888888888887
Q ss_pred HHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHH-H
Q 001645 924 MRQEGCEP-TVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFP-----DFRTYSMFIGCLCKVGKSEEALELLSEMT-E 996 (1038)
Q Consensus 924 m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~l~~~m~-~ 996 (1038)
+.+. .| +...+..+..++...|++++|.++++++....+.. +...+..+...+...|++++|++.|++.. .
T Consensus 663 ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~ 740 (1157)
T PRK11447 663 LPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVA 740 (1157)
T ss_pred Hhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7653 34 34556667777778888888888888887654331 22456666777888888888888888765 3
Q ss_pred CCCCC
Q 001645 997 SGIVP 1001 (1038)
Q Consensus 997 ~g~~p 1001 (1038)
.|+.|
T Consensus 741 ~~~~~ 745 (1157)
T PRK11447 741 SGITP 745 (1157)
T ss_pred cCCCC
Confidence 34544
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-23 Score=263.41 Aligned_cols=646 Identities=12% Similarity=0.038 Sum_probs=435.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---------
Q 001645 198 YNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAY--------- 268 (1038)
Q Consensus 198 ~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--------- 268 (1038)
.-..++..-..++.+.|.+.++++.... +.++.++..++..+.+.|+.++|...+++..+.. +.+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhc
Confidence 4556667778899999999999998775 7789999999999999999999999999999874 2232222
Q ss_pred -------HHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhhHH
Q 001645 269 -------KVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLS-LYKIVMNCAAKLGDVDAVLSIADDMVRISQIPE-RDAYG 339 (1038)
Q Consensus 269 -------~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~ 339 (1038)
..+...+.+.|++++|.+.|+.+.+.+. |+.. ....+.......|+.++|.+.++++.+.. |+ ...+.
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~--P~~~~~~~ 185 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY--PGNTGLRN 185 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 2223356677777777777777765432 2221 11111111223467777777777776643 32 33455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--ChhhHHHHHHHHhcc
Q 001645 340 CVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLV--DGKIYGIIIGGYLRK 417 (1038)
Q Consensus 340 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~li~~~~~~ 417 (1038)
.+...+...|+.++|++.++++...... +. ..+...+..+...... ....+...+..+-..
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~-~~----------------~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~ 248 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSPAG-RD----------------AAAQLWYGQIKDMPVSDASVAALQKYLQVFSDG 248 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCc-hH----------------HHHHHHHHHHhccCCChhhHHHHHHHHHHCCCc
Confidence 6666666677777777777776543211 00 1111111111111111 112223333333333
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001645 418 NDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVF 497 (1038)
Q Consensus 418 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 497 (1038)
...+.|...+.++......|+... ......+...|++++|...|++.++.. +.+..++..+...|.+.|++++|...|
T Consensus 249 ~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l 326 (1157)
T PRK11447 249 DSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQF 326 (1157)
T ss_pred hHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344556666655544332333221 123445566788888888888887763 236677777888888888888888888
Q ss_pred HHHHhCCCCC-CHHHHHH------------HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 001645 498 KCMEDKGIRP-TRKSYSV------------FIKELCRVSRTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVE 564 (1038)
Q Consensus 498 ~~m~~~g~~p-~~~~~~~------------li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~~ 564 (1038)
++..+..... ....|.. ....+.+.|++++|...|++.....
T Consensus 327 ~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~------------------------- 381 (1157)
T PRK11447 327 EKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD------------------------- 381 (1157)
T ss_pred HHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------------------------
Confidence 8877653211 1111211 1234566777777777777765431
Q ss_pred HHHHHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHHH
Q 001645 565 KVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESL 644 (1038)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 644 (1038)
T Consensus 382 -------------------------------------------------------------------------------- 381 (1157)
T PRK11447 382 -------------------------------------------------------------------------------- 381 (1157)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHH
Q 001645 645 EKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDT 724 (1038)
Q Consensus 645 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~ 724 (1038)
+.+...+..+...+...|++++|.+.|++..+..+. +...
T Consensus 382 ---------------------------------------P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a 421 (1157)
T PRK11447 382 ---------------------------------------NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNA 421 (1157)
T ss_pred ---------------------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 122345556677788889999999999999887654 5667
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCC--------ChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHH
Q 001645 725 WTIMMMQYGRAGLTEMAMRVFEDMKANGCNP--------SGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKEL 796 (1038)
Q Consensus 725 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--------~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~ 796 (1038)
+..+...|. .+..++|+.+++.+....... ....+..+...+. ..|++++|+..+++.++.... +...
T Consensus 422 ~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~--~~g~~~eA~~~~~~Al~~~P~-~~~~ 497 (1157)
T PRK11447 422 VRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALE--NQGKWAQAAELQRQRLALDPG-SVWL 497 (1157)
T ss_pred HHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHH--HCCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 777777774 467899998887654321000 0011122222222 456999999999999987532 4567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHH---------HHH
Q 001645 797 VETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEF---------VFG 867 (1038)
Q Consensus 797 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~ 867 (1038)
+..+..+|.+.|++++|...++.+.+..+.++..+..+...+...|+.++|+..++.+......++.. .+.
T Consensus 498 ~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l 577 (1157)
T PRK11447 498 TYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVL 577 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHH
Confidence 77889999999999999999999999888877777777777888999999999998865432222221 223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 001645 868 SLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLG 947 (1038)
Q Consensus 868 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g 947 (1038)
.+...+...|+.++|..+++. .+++...+..+...+.+.|++++|++.|++.++.. +.+...+..++..|...|
T Consensus 578 ~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g 651 (1157)
T PRK11447 578 ETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQG 651 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 456778899999999999882 35666778889999999999999999999999863 346788899999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CC---ChhcHHHHHHHHhccCChhhh
Q 001645 948 KVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGI--VP---SNINFRTIFFGLNREDNLYQI 1022 (1038)
Q Consensus 948 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~--~p---~~~~~~~l~~~~~~~g~~~~~ 1022 (1038)
++++|++.++.+.+..+. +..++..+..++...|++++|.++++++....- .| +...++.+...+...|+.++.
T Consensus 652 ~~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A 730 (1157)
T PRK11447 652 DLAAARAQLAKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQA 730 (1157)
T ss_pred CHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 999999999998877665 777888899999999999999999999986421 12 234566667778888888874
Q ss_pred h
Q 001645 1023 T 1023 (1038)
Q Consensus 1023 ~ 1023 (1038)
.
T Consensus 731 ~ 731 (1157)
T PRK11447 731 L 731 (1157)
T ss_pred H
Confidence 3
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-20 Score=227.32 Aligned_cols=632 Identities=10% Similarity=0.019 Sum_probs=330.0
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 001645 207 EAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALE 286 (1038)
Q Consensus 207 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 286 (1038)
..|++++|...|+...+.. |.+..++..|...|.+.|+.++|+..+++..+. .|+-..|..++..+ +++++|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence 3488888888888888766 666788888888888888888888888888876 34433333333333 77888888
Q ss_pred HHHHHHhCCCcCCHHHHHHHHHH--------HHhcCChhHHHHHHHHHHHcCCCCChhhHHHH-HHHHHhcCCHHHHHHH
Q 001645 287 FYKEMAQKEMVLDLSLYKIVMNC--------AAKLGDVDAVLSIADDMVRISQIPERDAYGCV-LKSFCVSMRIREALEF 357 (1038)
Q Consensus 287 ~~~~m~~~~~~p~~~~~~~li~~--------~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~g~~~~A~~~ 357 (1038)
+|+++.+.... +..++..+... |.+. +++.+.++ .......|+..+.... .+.|.+.|++++|+++
T Consensus 130 ~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 130 TVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 88888776432 34455444444 4444 44444444 3333334444444444 7888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC-
Q 001645 358 IRNLKSKEISMDRDHFETLVKGLCI-AGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGY- 435 (1038)
Q Consensus 358 ~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~- 435 (1038)
++++.+.++. +......|...|.. .++ +++..+++...+ .+...+..++..|.+.|+.++|.++++++...-.
T Consensus 205 L~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 205 YNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC
Confidence 8888887655 45556666667777 366 777666443111 3566788888888888888888888887765422
Q ss_pred CCCHHHHHHHH------------------------------HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-
Q 001645 436 LPMASTYTELM------------------------------QHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGH- 484 (1038)
Q Consensus 436 ~p~~~t~~~ll------------------------------~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~- 484 (1038)
.|...++..++ ..+.+.++++.+.++. .+.|..... .+..+
T Consensus 280 ~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~r~~~ 351 (987)
T PRK09782 280 DAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEML--EERYAV 351 (987)
T ss_pred CCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHH--HHHHhh
Confidence 24444433332 2222333333222221 112222211 11111
Q ss_pred -HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCChH
Q 001645 485 -VRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQAS--KIVIGDEIFHWVISCMEKKGEME 561 (1038)
Q Consensus 485 -~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~ 561 (1038)
...+...++...+..|..... -+.....-+.-...+.|+.++|..+|++.... ...++......++..+.+.+..+
T Consensus 352 ~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 430 (987)
T PRK09782 352 SVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA 430 (987)
T ss_pred ccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence 112334444444444433210 12222222223344555566666666555431 11122223334444444443322
Q ss_pred HHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHH
Q 001645 562 SVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQ 641 (1038)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 641 (1038)
...+...+
T Consensus 431 ~~~~~~~l------------------------------------------------------------------------ 438 (987)
T PRK09782 431 TPAKVAIL------------------------------------------------------------------------ 438 (987)
T ss_pred chHHHHHh------------------------------------------------------------------------
Confidence 22111100
Q ss_pred HHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHH---HHHHHHHHcCC
Q 001645 642 ESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMR---NLFYEMRRNGY 718 (1038)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~---~l~~~m~~~~~ 718 (1038)
.+.....+. +.-.+.+..+. ..+.......
T Consensus 439 ------------------~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~al~~~- 471 (987)
T PRK09782 439 ------------------SKPLPLAEQ----------------------------RQWQSQLPGIADNCPAIVRLLGDM- 471 (987)
T ss_pred ------------------ccccccchh----------------------------HHHHhhhhhhhhhHHHHHHhcccC-
Confidence 000000000 00001111111 1111111111
Q ss_pred CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHH
Q 001645 719 LI--TPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKEL 796 (1038)
Q Consensus 719 ~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~ 796 (1038)
++ +...|..+..++.. ++.++|+..|.+.... .|+... .+..++.....|++++|...++++... .|+...
T Consensus 472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~--~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a 544 (987)
T PRK09782 472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQ--HRAVAYQAYQVEDYATALAAWQKISLH--DMSNED 544 (987)
T ss_pred CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHH--HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHH
Confidence 12 44455555555544 5555566655554443 244322 222222211334666666666655443 222233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 001645 797 VETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQR 876 (1038)
Q Consensus 797 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 876 (1038)
+..+..++.+.|+.++|...++...+..+.....+..+.......|++++|+..+++..+. .|+...|..+...+.+.
T Consensus 545 ~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~l 622 (987)
T PRK09782 545 LLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQR 622 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHC
Confidence 3444555566666666666666666555433333333333333446666666666666653 35555666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 001645 877 GQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEP-TVVTYTALIQGFANLGKVAEAWDV 955 (1038)
Q Consensus 877 g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~ 955 (1038)
|++++|+..+++..+.. +.+...++.+...+...|+.++|++.+++.++. .| +...+..+..++...|++++|+..
T Consensus 623 G~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 623 HNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 66666666666666543 334455556666666666666666666666653 33 445566666666666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001645 956 FYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 956 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
+++..+..+. +..+.....+...+..+++.|.+-+++-.
T Consensus 700 l~~Al~l~P~-~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 700 ARLVIDDIDN-QALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHHHHhcCCC-CchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 6666665554 44555555666666666666666555544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-19 Score=213.60 Aligned_cols=307 Identities=9% Similarity=-0.020 Sum_probs=226.2
Q ss_pred CCHHHHHHHHHHHhcCCChhhHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCC---hHHHHHH---------------
Q 001645 685 HSSATYNMAIKTAGRGKDFKHMRNLFYEMRRN--GYLITPDTWTIMMMQYGRAGL---TEMAMRV--------------- 744 (1038)
Q Consensus 685 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~--~~~~~~~~~~~li~~~~~~g~---~~~A~~~--------------- 744 (1038)
.+.....-+.-...+.|+.++|..+|+..... .-..+......++..|.+.+. ..++..+
T Consensus 374 ~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 453 (987)
T PRK09782 374 ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQ 453 (987)
T ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhh
Confidence 34455555555667889999999999888652 122355566678888887766 3333333
Q ss_pred -------HHHHHHc-CCCCC--hhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001645 745 -------FEDMKAN-GCNPS--GSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAK 814 (1038)
Q Consensus 745 -------~~~m~~~-g~~p~--~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~ 814 (1038)
+...... +..|+ .......+..+.. . ++.++|...+.+..... |+......+...+...|++++|.
T Consensus 454 ~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~-~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi 529 (987)
T PRK09782 454 LPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYR-D-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATAL 529 (987)
T ss_pred hhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHH-h-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHH
Confidence 1111111 22244 3332233333332 3 58888999888877754 56544444555667999999999
Q ss_pred HHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001645 815 SCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGI 894 (1038)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 894 (1038)
..++.+....+. ...+..+...+.+.|+.++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.
T Consensus 530 ~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l-- 605 (987)
T PRK09782 530 AAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI-- 605 (987)
T ss_pred HHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--
Confidence 999998665433 4456777888999999999999999998863 223333334444555669999999999999875
Q ss_pred CccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 001645 895 YPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMF 974 (1038)
Q Consensus 895 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 974 (1038)
.|+...|..+...+.+.|+.++|+..+++..+.. +.+...++.+..++...|+.++|+..+++..+..|. ++..+..+
T Consensus 606 ~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nL 683 (987)
T PRK09782 606 APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQL 683 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 5678889999999999999999999999999863 335677888889999999999999999999999887 88999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 001645 975 IGCLCKVGKSEEALELLSEMTESGIVPSN 1003 (1038)
Q Consensus 975 ~~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 1003 (1038)
..+|...|++++|+..+++..+ +.|+.
T Consensus 684 A~al~~lGd~~eA~~~l~~Al~--l~P~~ 710 (987)
T PRK09782 684 AYVNQRLDDMAATQHYARLVID--DIDNQ 710 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh--cCCCC
Confidence 9999999999999999999986 45643
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-17 Score=187.54 Aligned_cols=661 Identities=13% Similarity=0.096 Sum_probs=406.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCC-H--HHHHHHHHHHHhcC-----------CHHHHHHHHHHH
Q 001645 195 TETYNTMLTIAGEAKELELLEELEREMEINS----CAKN-I--KTWTILVSLYGKAK-----------LIGKALLVFEKM 256 (1038)
Q Consensus 195 ~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~----~~~~-~--~~~~~li~~~~~~g-----------~~~~A~~~~~~m 256 (1038)
..+|..+...|...|..++...+++.-.... -.+. . ..++.+...|+..+ ....|..+|+..
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A 120 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLA 120 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHH
Confidence 4567788888899999999999988776210 0111 1 12233333332221 233444555544
Q ss_pred HhCCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCC
Q 001645 257 RKYGF-EPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNC--AAKLGDVDAVLSIADDMVRISQIP 333 (1038)
Q Consensus 257 ~~~g~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~p 333 (1038)
..... .+....+...........+++.|...|....+.. ++|+- ..+..+ ....+++..|+.+|+........-
T Consensus 121 ~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil--~LlGkA~i~ynkkdY~~al~yyk~al~inp~~ 197 (1018)
T KOG2002|consen 121 DKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNIL--ALLGKARIAYNKKDYRGALKYYKKALRINPAC 197 (1018)
T ss_pred HHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-CcchH--HHHHHHHHHhccccHHHHHHHHHHHHhcCccc
Confidence 43221 2222222222222222233577888887777653 22332 334444 345678888888888876654321
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCChhhHHHH
Q 001645 334 ERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIA---GRISDALEIVDIMMRRNLVDGKIYGII 410 (1038)
Q Consensus 334 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~l 410 (1038)
-......+-.+|.+.|+.+.|+..|.+..+.++. ++.++-.|...-... ..+..+..++...-..+..++.+.+.|
T Consensus 198 ~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~-~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~L 276 (1018)
T KOG2002|consen 198 KADVRIGIGHCFWKLGMSEKALLAFERALQLDPT-CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHL 276 (1018)
T ss_pred CCCccchhhhHHHhccchhhHHHHHHHHHhcChh-hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHH
Confidence 2222233345666788888888888888776542 333333333222222 345667777777767777777788888
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001645 411 IGGYLRKNDLSKALVQFERMKESGYL--PMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQD 488 (1038)
Q Consensus 411 i~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 488 (1038)
...|.-.|++..++.+...+...... .-...|-.+.+++-..|+++.|...|.+..+..-.--...+.-|..+|.+.|
T Consensus 277 An~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~ 356 (1018)
T KOG2002|consen 277 ANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRG 356 (1018)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhc
Confidence 88888888888888888777655311 1134466777888888888888888877776532211334455777888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 001645 489 NLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVS----RTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVE 564 (1038)
Q Consensus 489 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~~ 564 (1038)
+++.+...|+.+.... +-+..+..+|-..|...+ ..+.|..++.+..+.-
T Consensus 357 dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~------------------------- 410 (1018)
T KOG2002|consen 357 DLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT------------------------- 410 (1018)
T ss_pred hHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-------------------------
Confidence 8888888888877653 123445555555555543 2344444444433221
Q ss_pred HHHHHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHHH
Q 001645 565 KVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESL 644 (1038)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 644 (1038)
T Consensus 411 -------------------------------------------------------------------------------- 410 (1018)
T KOG2002|consen 411 -------------------------------------------------------------------------------- 410 (1018)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHH----HHHHHcCCCC
Q 001645 645 EKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLF----YEMRRNGYLI 720 (1038)
Q Consensus 645 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~----~~m~~~~~~~ 720 (1038)
+.|...|-.+..++...+-+.. ...| +.+...+..+
T Consensus 411 ---------------------------------------~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~i 450 (1018)
T KOG2002|consen 411 ---------------------------------------PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQI 450 (1018)
T ss_pred ---------------------------------------cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCC
Confidence 1111222222222222111111 2222 2334445456
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCCh-----hhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCC
Q 001645 721 TPDTWTIMMMQYGRAGLTEMAMRVFEDMKAN---GCNPSG-----STYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIP 792 (1038)
Q Consensus 721 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~-----~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~ 792 (1038)
.+...|.+...+...|.+++|...|+..+.. -..++. .|..+.+..+.. ..++.+.|.++|..+++.. |
T Consensus 451 p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E-~l~~~~~A~e~Yk~Ilkeh--p 527 (1018)
T KOG2002|consen 451 PPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE-ELHDTEVAEEMYKSILKEH--P 527 (1018)
T ss_pred CHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHC--c
Confidence 7778888888888888888888888877664 122333 233444444443 3457888888888888763 3
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcC-CCCCHHHHHHHH
Q 001645 793 D-KELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEER-SKLDEFVFGSLI 870 (1038)
Q Consensus 793 d-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li 870 (1038)
. +..|-.+.-+....++..+|...+......+-.+|..|+.+...+.+...+.-|.+-|....+.- ..+|.++.-+|.
T Consensus 528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLG 607 (1018)
T KOG2002|consen 528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALG 607 (1018)
T ss_pred hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhh
Confidence 2 11222222122223567788888888888888888888888888888888888888666655431 226777777777
Q ss_pred HHHHh------------cCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 001645 871 HGLVQ------------RGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTA 938 (1038)
Q Consensus 871 ~~~~~------------~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ 938 (1038)
+.|.+ .+..++|+++|.+..+.. +-|...-|-+.-.++..|++.+|..+|....+.. .-+..+|-.
T Consensus 608 N~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lN 685 (1018)
T KOG2002|consen 608 NVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLN 685 (1018)
T ss_pred HHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeee
Confidence 75543 345678888888888754 6677888888888888999999999999888764 235567778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhcHHHHH
Q 001645 939 LIQGFANLGKVAEAWDVFYRMKIK-GPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRTIF 1010 (1038)
Q Consensus 939 li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~ 1010 (1038)
+...|..+|++..|+++|+...+. ...-+......|..++...|.+.+|.+.+.........-..+-|+..+
T Consensus 686 lah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 686 LAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 888888999999999999887765 445577788888899999999999888887776533222344555444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.6e-17 Score=181.86 Aligned_cols=601 Identities=13% Similarity=0.098 Sum_probs=420.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 001645 246 IGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADD 325 (1038)
Q Consensus 246 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 325 (1038)
++.|...|....+.. ++|....-.=.......+++..|+.+|+.........-+.....+..++.+.|+.+.|...|..
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence 689999999888764 5555444333334456789999999999976654322223334455778899999999999999
Q ss_pred HHHcCCCCChh-hHHHHHH---HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 001645 326 MVRISQIPERD-AYGCVLK---SFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNL 401 (1038)
Q Consensus 326 m~~~~~~p~~~-~~~~ll~---~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 401 (1038)
..+.. |+.+ ++..|-- .+-....+..++.++......... |+...+.|...|.-.|++..+..+...+.....
T Consensus 225 alqLd--p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 225 ALQLD--PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHhcC--hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 88844 4222 2222211 111223455677777666655544 788899999999999999999999998887664
Q ss_pred CC---hhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 001645 402 VD---GKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMA--STYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVA 476 (1038)
Q Consensus 402 ~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~ 476 (1038)
.. ...|.-+..+|-..|++++|..+|.+..... ++. ..+.-+.+.+.+.|+++.+...|+...+.. +.+..+
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~et 378 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYET 378 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHH
Confidence 42 3458889999999999999999998776653 443 445567888999999999999999999873 446677
Q ss_pred HHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 001645 477 VTAMVAGHVRQD----NLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASKIVIGDEIFHWVIS 552 (1038)
Q Consensus 477 ~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 552 (1038)
...|...|...+ ..+.|..++.+..+.- +.|...|-.+...+... +...++.+|.....
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d--------------- 441 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALD--------------- 441 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHH---------------
Confidence 778888887775 4567777777766654 23666777665555443 33333555544321
Q ss_pred HHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCCChhhHHHHHHHhc
Q 001645 553 CMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLS 632 (1038)
Q Consensus 553 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 632 (1038)
.++..
T Consensus 442 ~L~~~--------------------------------------------------------------------------- 446 (1018)
T KOG2002|consen 442 ILESK--------------------------------------------------------------------------- 446 (1018)
T ss_pred HHHHc---------------------------------------------------------------------------
Confidence 11111
Q ss_pred CCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHH
Q 001645 633 SSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYE 712 (1038)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~ 712 (1038)
+..+.+...|.+...+...|+++.|...|+.
T Consensus 447 -------------------------------------------------~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~ 477 (1018)
T KOG2002|consen 447 -------------------------------------------------GKQIPPEVLNNVASLHFRLGNIEKALEHFKS 477 (1018)
T ss_pred -------------------------------------------------CCCCCHHHHHhHHHHHHHhcChHHHHHHHHH
Confidence 1113446777888888889999999999988
Q ss_pred HHHc---CCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHH
Q 001645 713 MRRN---GYLITP------DTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQ 783 (1038)
Q Consensus 713 m~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~ 783 (1038)
.... ...++. .+--.+...+-..++++.|.+.|..+.+. .|+-+....-+..+... .+...+|...+.
T Consensus 478 A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~-k~~~~ea~~~lk 554 (1018)
T KOG2002|consen 478 ALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARD-KNNLYEASLLLK 554 (1018)
T ss_pred HhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHh-ccCcHHHHHHHH
Confidence 7654 111222 22333555666778899999999999885 56766554444444443 348888999888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHH--HHHHHHH------------HcCCHhHHHH
Q 001645 784 EMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYS--LYIRALC------------RAGELEEALA 849 (1038)
Q Consensus 784 ~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~li~~~~------------~~g~~~~A~~ 849 (1038)
.....+ ..++..+.-+.+.+.+...+..|.+-|..+.+.-...+.+|+ .|.+.|. ..+..++|++
T Consensus 555 ~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq 633 (1018)
T KOG2002|consen 555 DALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQ 633 (1018)
T ss_pred HHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHH
Confidence 887754 334445555666888888888898888777766544444443 3344332 2345788999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001645 850 LLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGC 929 (1038)
Q Consensus 850 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~ 929 (1038)
+|++.... -+.|...-|.+.-.++..|++.+|..+|.++.+.. .-...+|-.+.++|...|++..|+++|+.....-.
T Consensus 634 ~y~kvL~~-dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 634 LYGKVLRN-DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred HHHHHHhc-CcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999886 35577888999999999999999999999999864 34567788999999999999999999999887633
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH------------------HhcCChHHHHHH
Q 001645 930 -EPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCL------------------CKVGKSEEALEL 990 (1038)
Q Consensus 930 -~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~------------------~~~g~~~~A~~l 990 (1038)
.-+..+.+.|..++.+.|.+.+|.+.+.......|.-....+|..+... ...+..++|.++
T Consensus 712 ~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~ 791 (1018)
T KOG2002|consen 712 KKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRL 791 (1018)
T ss_pred ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 3467888999999999999999999999988877773334444332221 112336778888
Q ss_pred HHHHHHCCCC
Q 001645 991 LSEMTESGIV 1000 (1038)
Q Consensus 991 ~~~m~~~g~~ 1000 (1038)
|.+|...+-+
T Consensus 792 F~~ls~~~d~ 801 (1018)
T KOG2002|consen 792 FTELSKNGDK 801 (1018)
T ss_pred HHHHHhcCCC
Confidence 8888765444
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-17 Score=178.24 Aligned_cols=303 Identities=14% Similarity=0.167 Sum_probs=205.1
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHH
Q 001645 703 FKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIF 782 (1038)
Q Consensus 703 ~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~ 782 (1038)
+++|..-+.+..+..+. =...|+.|...+-..|+...|++.|++.... +|+-.....-+....+ ..+.+++|...|
T Consensus 200 l~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~k-e~~~~d~Avs~Y 275 (966)
T KOG4626|consen 200 LEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYK-EARIFDRAVSCY 275 (966)
T ss_pred cchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHH-HHhcchHHHHHH
Confidence 33444444443333221 2345566666666666666666666666653 3443222112222222 334666666666
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC
Q 001645 783 QEMVNAGHIPD-KELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKL 861 (1038)
Q Consensus 783 ~~m~~~~~~~d-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 861 (1038)
.+.... .|+ ...+..+.-.|...|.++.|+..++...+..|.-+.+|+.|..++-..|++.+|.+.+.+.... .+.
T Consensus 276 ~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-~p~ 352 (966)
T KOG4626|consen 276 LRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-CPN 352 (966)
T ss_pred HHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-CCc
Confidence 665543 332 3445555666777788888888888888888777888888888888888888888888888775 333
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 001645 862 DEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPT-VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPT-VVTYTAL 939 (1038)
Q Consensus 862 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~l 939 (1038)
...+.+.|...|...|.+++|..+|....+- .|. ....|.|...|-+.|++++|+..+++.+. ++|+ ...|+.+
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~Nm 428 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNM 428 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhc
Confidence 4567778888888888888888888877763 333 45677788888888888888888888876 5676 4678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhcHHHHHHHHhccCC
Q 001645 940 IQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPS-NINFRTIFFGLNREDN 1018 (1038)
Q Consensus 940 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 1018 (1038)
...|-..|+.+.|.+.+.+.+..+|. =....+.|..+|..+|+..+|++-+++.+. ++|| ...+..+++++.--.+
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhc
Confidence 88888888888888888888876655 456778888888888888888888888774 6675 3556666666544333
Q ss_pred h
Q 001645 1019 L 1019 (1038)
Q Consensus 1019 ~ 1019 (1038)
+
T Consensus 506 w 506 (966)
T KOG4626|consen 506 W 506 (966)
T ss_pred c
Confidence 3
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.1e-18 Score=192.32 Aligned_cols=298 Identities=14% Similarity=0.117 Sum_probs=189.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCC---HHHHHHHHHHHHhcCChhH
Q 001645 242 KAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLD---LSLYKIVMNCAAKLGDVDA 318 (1038)
Q Consensus 242 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~ 318 (1038)
..|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+++.
T Consensus 47 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3344444444444444332 12223344444444444444444444444433221111 1234444444444555555
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 001645 319 VLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMD----RDHFETLVKGLCIAGRISDALEIVD 394 (1038)
Q Consensus 319 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~ 394 (1038)
|..+|+++.+.. .++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...|+
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 555555444321 12233455555555555556666555555555433321 1234556667777888888888888
Q ss_pred HHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 001645 395 IMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDS 474 (1038)
Q Consensus 395 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~ 474 (1038)
++.+..+.+...+..+...|.+.|++++|.++|+++...+......+++.+...+...|++++|.+.++.+.+. .|+.
T Consensus 205 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~ 282 (389)
T PRK11788 205 KALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGA 282 (389)
T ss_pred HHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc
Confidence 88777666666777788888888888888888888876543323456788888888999999999999988876 4566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHH
Q 001645 475 VAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCR---VSRTNEILKVLNNMQASKIVIGDE 545 (1038)
Q Consensus 475 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~ 545 (1038)
..+..++..+.+.|++++|..+|+++.+. .|+..+++.++..++. .|+.++++.++++|.+.++.|++.
T Consensus 283 ~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 283 DLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 66788889999999999999999988776 4888888888887775 558899999999999888777765
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-17 Score=189.37 Aligned_cols=300 Identities=17% Similarity=0.136 Sum_probs=250.2
Q ss_pred HHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhhcC
Q 001645 696 TAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSG---STYKYLIISLSGRKG 772 (1038)
Q Consensus 696 ~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~ 772 (1038)
.+...++++.|...|.++.+.++. +..++..+...+.+.|++++|..+++.+...+..++. ..+..+...+. ..
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~--~~ 120 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL--KA 120 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH--HC
Confidence 456778999999999999988654 6778999999999999999999999999885322221 23444444444 45
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-----chHHHHHHHHHHcCCHhHH
Q 001645 773 RKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVP-----LSYSLYIRALCRAGELEEA 847 (1038)
Q Consensus 773 ~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A 847 (1038)
|++++|..+|.++.+.. ..+..++..++.++.+.|++++|.+.++.+.+.++.+. ..+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 69999999999998763 34577889999999999999999999999998776543 2456778888999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001645 848 LALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQE 927 (1038)
Q Consensus 848 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 927 (1038)
...|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+......+++.++.+|.+.|++++|.+.++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998863 33466788899999999999999999999987542333567889999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChh
Q 001645 928 GCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCK---VGKSEEALELLSEMTESGIVPSNI 1004 (1038)
Q Consensus 928 g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~ 1004 (1038)
.|+...+..++..+.+.|++++|.++++++.+. .|+..+++.++..+.. .|+..+|+.++++|.++++.|+..
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 577777789999999999999999999999886 4677889888888775 569999999999999988888775
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-16 Score=166.46 Aligned_cols=274 Identities=15% Similarity=0.160 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001645 724 TWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDC 803 (1038)
Q Consensus 724 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~ 803 (1038)
.|-.|-..|...+.+++|+..|.+.... .|+......-+..... ..|.++-|+..|++.++..... ...|+.|..+
T Consensus 254 AYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYy-eqG~ldlAI~~Ykral~~~P~F-~~Ay~NlanA 329 (966)
T KOG4626|consen 254 AYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYY-EQGLLDLAIDTYKRALELQPNF-PDAYNNLANA 329 (966)
T ss_pred HHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEe-ccccHHHHHHHHHHHHhcCCCc-hHHHhHHHHH
Confidence 3444444444444555555555444432 3433222111111111 3346666666666665543222 3467777778
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 001645 804 LCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLD-EFVFGSLIHGLVQRGQIEEA 882 (1038)
Q Consensus 804 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A 882 (1038)
+...|++.+|..++.+.+...+..+.+.+.|...|...|++++|..+|....+- .|. ...++.|...|-+.|++++|
T Consensus 330 Lkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~A 407 (966)
T KOG4626|consen 330 LKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDA 407 (966)
T ss_pred HHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHH
Confidence 888888888888888888887777778888888888888888888888888773 444 44678888888888888888
Q ss_pred HHHHHHHHHcCCCcc-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 883 LAKVETMKQAGIYPT-VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPT-VVTYTALIQGFANLGKVAEAWDVFYRMK 960 (1038)
Q Consensus 883 ~~~~~~m~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 960 (1038)
+..+++..+ +.|+ ...|+.+...|-..|+++.|++.+.+.+.. .|. ....+.|...|-..|++.+|+.-+++..
T Consensus 408 i~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 408 IMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 888888776 4565 467888888888888888888888888764 554 4567788888888899999999998888
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCh-------HHHHHHHHHHHHCCCCCChhcHHH
Q 001645 961 IKGPFPDFRTYSMFIGCLCKVGKS-------EEALELLSEMTESGIVPSNINFRT 1008 (1038)
Q Consensus 961 ~~~~~~~~~~~~~l~~~~~~~g~~-------~~A~~l~~~m~~~g~~p~~~~~~~ 1008 (1038)
+..|. -+..|-.++.++---.+| .+-.++.++=.++..-|+...+.+
T Consensus 484 klkPD-fpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql~~~rlpsvhP~hs 537 (966)
T KOG4626|consen 484 KLKPD-FPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQLEKNRLPSVHPHHS 537 (966)
T ss_pred ccCCC-CchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCCccCcccc
Confidence 76554 334555555554333333 333344444334444555444333
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-14 Score=174.11 Aligned_cols=256 Identities=17% Similarity=0.065 Sum_probs=206.8
Q ss_pred cCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001645 735 AGLTEMAMRVFEDMKANG-CNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLA 813 (1038)
Q Consensus 735 ~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A 813 (1038)
.+.+++|++.|+...+.+ ..|+.......+..+. ...|++++|+..++..++... .....+..+..++...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~-~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFK-CLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHH
Confidence 478999999999999865 3344433333333332 245699999999999988642 2355778888999999999999
Q ss_pred HHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001645 814 KSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAG 893 (1038)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 893 (1038)
...++.+.+..+.++..|..+...+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+..
T Consensus 385 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 385 EEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999999998888999999999999999999999999999852 3356678888899999999999999999988752
Q ss_pred CCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HH------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001645 894 IYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPT--VV------TYTALIQGFANLGKVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 894 ~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 965 (1038)
+.+...|+.+...+...|++++|++.|++..+. .|+ .. .++..+..+...|++++|.+++++..+..+.
T Consensus 464 -P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 464 -PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred -CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 556788999999999999999999999999875 332 11 1222223344579999999999999988766
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 001645 966 PDFRTYSMFIGCLCKVGKSEEALELLSEMTES 997 (1038)
Q Consensus 966 ~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~ 997 (1038)
+..++..++.+|...|++++|++.+++..+.
T Consensus 541 -~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 541 -CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred -cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6778999999999999999999999998753
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-12 Score=146.82 Aligned_cols=331 Identities=15% Similarity=0.091 Sum_probs=248.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 001645 200 TMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAG 279 (1038)
Q Consensus 200 ~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 279 (1038)
.....+...|++++|..++.++++.. +.+...|.+|...|-..|+.+++...+-..-... +-|...|-.+-....+.|
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcc
Confidence 33444455599999999999999887 8889999999999999999999999887777654 557789999999999999
Q ss_pred ChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh----hHHHHHHHHHhcCCHHHHH
Q 001645 280 KGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERD----AYGCVLKSFCVSMRIREAL 355 (1038)
Q Consensus 280 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~g~~~~A~ 355 (1038)
+++.|.-+|.+.++... ++...+---...|-+.|+...|.+.|.++.......|.. .-..+++.|...++-+.|.
T Consensus 222 ~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred cHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999998753 355566666778899999999999999998865421211 2334566777788889999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------------------C-----Chhh
Q 001645 356 EFIRNLKSK-EISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNL-----------------------V-----DGKI 406 (1038)
Q Consensus 356 ~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------------------~-----~~~~ 406 (1038)
+.++..... +-..+...++.++..|.+...++.|......+..... . +..+
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 998887663 2233566788999999999999999988877765110 0 1111
Q ss_pred -HHHHHHHHhccCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001645 407 -YGIIIGGYLRKNDLSKALVQFERMKESG--YLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAG 483 (1038)
Q Consensus 407 -~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~ 483 (1038)
...+-....+.++..+++. .-+.+.. +.-+...|.-+..++...|.+.+|..++..+.....--+..+|-.+..+
T Consensus 381 ~rl~icL~~L~~~e~~e~ll--~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALL--HFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred HhHhhhhhcccccchHHHHH--HHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 1111112223334444443 3344444 3345677888899999999999999999999887655567889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 484 HVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQ 536 (1038)
Q Consensus 484 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (1038)
|...|..++|...|+....... -+...-..|-..+.+.|+.++|++.+..+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999998887531 244445556667888999999999998865
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-14 Score=144.45 Aligned_cols=375 Identities=16% Similarity=0.197 Sum_probs=268.3
Q ss_pred CChhcHHHHHhcCCCCCCHHHHHHHHHhh-c-cCchhHHHHHHHhhhCCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 001645 143 NDVVSMEERLENLSFRFEPEVVDKVLKRC-F-KVPHLALRFFNWVKLREGFC-HATETYNTMLTIAGEAKELELLEELER 219 (1038)
Q Consensus 143 ~~~~~~~~~l~~~~~~~~~~~~~~vl~~~-~-~~~~~a~~~f~~~~~~~~~~-~~~~~~~~li~~l~~~~~~~~a~~l~~ 219 (1038)
+++.-+...++..|..+++.+-..++... . ++...-+.-.+|......+. -+..+| +.|.. |. ++-
T Consensus 132 KDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--------K~G~v--Ad-L~~ 200 (625)
T KOG4422|consen 132 KDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--------KSGAV--AD-LLF 200 (625)
T ss_pred chhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--------ccccH--HH-HHH
Confidence 55677889999999999998776666542 1 22221111122222111111 122233 23333 22 443
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCC
Q 001645 220 EMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLD 299 (1038)
Q Consensus 220 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~ 299 (1038)
+.. |.+..+|..+|.+.|+-...+.|.+++.+-.....+.+..+||.+|.+-.-. ...++..+|....+.||
T Consensus 201 E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 201 ETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPN 272 (625)
T ss_pred hhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCc
Confidence 332 7888999999999999999999999999998877799999999999775432 23788999999999999
Q ss_pred HHHHHHHHHHHHhcCChh----HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHh----CCCCC--
Q 001645 300 LSLYKIVMNCAAKLGDVD----AVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIRE-ALEFIRNLKS----KEISM-- 368 (1038)
Q Consensus 300 ~~~~~~li~~~~~~g~~~----~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~-A~~~~~~m~~----~~~~p-- 368 (1038)
..|+|+++++.++.|+++ .|.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. +.++|
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 999999999999999875 467888999999999999999999999999888754 4444444433 33333
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 001645 369 --DRDHFETLVKGLCIAGRISDALEIVDIMMRRNLV--------DGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPM 438 (1038)
Q Consensus 369 --~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 438 (1038)
|...|..-+..|....+.+-|..+........-. ...-|..+....|+....+....+|+.|.-.-.-|+
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~ 432 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH 432 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC
Confidence 4556777788888999999999888777644321 123456677888899999999999999998877889
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CH---H----------HHHHHH-------
Q 001645 439 ASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQD-NL---S----------EAWKVF------- 497 (1038)
Q Consensus 439 ~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g-~~---~----------~A~~~~------- 497 (1038)
..+...++++..-.+.++-.-++|.+++..|..-+.....-++..+++.. +. + -|..++
T Consensus 433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~ 512 (625)
T KOG4422|consen 433 SQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQP 512 (625)
T ss_pred chhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999886666666666666666554 11 0 111111
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001645 498 KCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQAS 538 (1038)
Q Consensus 498 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (1038)
.+|....+ .....+.+.-.+.|.|+.++|.++|..+...
T Consensus 513 ~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~ 551 (625)
T KOG4422|consen 513 IRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRK 551 (625)
T ss_pred HHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhc
Confidence 12333333 3445566666678888888888888887544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.7e-14 Score=167.74 Aligned_cols=329 Identities=10% Similarity=-0.024 Sum_probs=197.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 001645 200 TMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAG 279 (1038)
Q Consensus 200 ~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 279 (1038)
.....+.+.|+++.|...|+...+. .|+...|..+..+|.+.|++++|+..++...+.. +.+...|..+..+|...|
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 3444556667777777777776654 3556666677777777777777777777766553 334556666777777777
Q ss_pred ChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHH-----------------------------HHHHHcC
Q 001645 280 KGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIA-----------------------------DDMVRIS 330 (1038)
Q Consensus 280 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~-----------------------------~~m~~~~ 330 (1038)
++++|...|......+...+... ..++..+........+...+ .+..+
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 285 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE-- 285 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc--
Confidence 77777666655443321111111 11111100000001111110 00000
Q ss_pred CCCCh-hhHHHHHHHH---HhcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh
Q 001645 331 QIPER-DAYGCVLKSF---CVSMRIREALEFIRNLKSKE-ISM-DRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDG 404 (1038)
Q Consensus 331 ~~p~~-~~~~~ll~~~---~~~g~~~~A~~~~~~m~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 404 (1038)
..++. ..+..+...+ ...+++++|.+.|+...+.+ ..| +...+..+...+...|++++|...|++....++...
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 00100 0011111000 12356777888877777654 222 345566777777778888888888888777777666
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 001645 405 KIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGH 484 (1038)
Q Consensus 405 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~ 484 (1038)
..|..+...+...|++++|+..|++..+.. +.+...|..+...+...|++++|...|+..++.. +.+...+..+...+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence 677777777778888888888887776653 2346677777777777888888888888777763 23456666777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001645 485 VRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQA 537 (1038)
Q Consensus 485 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (1038)
.+.|++++|...|++..... +-+...|+.+...+...|++++|++.|++...
T Consensus 444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 77888888888887776543 22456677777777778888888887777654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.4e-15 Score=174.53 Aligned_cols=332 Identities=11% Similarity=0.043 Sum_probs=234.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 001645 199 NTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNA 278 (1038)
Q Consensus 199 ~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 278 (1038)
-.++..+.+.|+++.|..+++...... +.+...+..++.+....|++++|+..|+++.+.. +.+...+..+...+...
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 345556677788888888888777664 5556666666677777888888888888887663 34456677777778888
Q ss_pred CChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 001645 279 GKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFI 358 (1038)
Q Consensus 279 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 358 (1038)
|+++.|...|+++.+.. +.+...+..+...+...|++++|...++.+......+.. .+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHHHHH
Confidence 88888888888887652 224567777777888888888888888777664432221 22222 3467778888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHH----HHHHHHHHHHCC
Q 001645 359 RNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSK----ALVQFERMKESG 434 (1038)
Q Consensus 359 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g 434 (1038)
+.+.+....++...+..+...+.+.|++++|...+++....++.+...+..+...|...|++++ |...|++.....
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 8877665444444555566777788888888888888887777777777778888888888775 677787777653
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HH
Q 001645 435 YLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKS-YS 513 (1038)
Q Consensus 435 ~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~ 513 (1038)
+.+...+..+...+...|++++|...+++.++.. +.+...+..+...|.+.|++++|...|+.+...+ |+... +.
T Consensus 281 -P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~ 356 (656)
T PRK15174 281 -SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNR 356 (656)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHH
Confidence 2345677777788888888888888888887763 2245566677778888888888888888877653 44333 33
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001645 514 VFIKELCRVSRTNEILKVLNNMQASK 539 (1038)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~~ 539 (1038)
.+..++...|+.++|...|++..+..
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34566778888888888888876653
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-14 Score=172.05 Aligned_cols=187 Identities=16% Similarity=0.096 Sum_probs=92.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhH----HH
Q 001645 773 RKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEE----AL 848 (1038)
Q Consensus 773 ~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~ 848 (1038)
|++++|...++.+++....++......+..++.+.|++++|...++.+....+.++..+..+...|...|++++ |+
T Consensus 191 g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~ 270 (656)
T PRK15174 191 SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAA 270 (656)
T ss_pred CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHH
Confidence 34555555555444433222222333334445555555555555555555555445555555555555555553 45
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001645 849 ALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEG 928 (1038)
Q Consensus 849 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g 928 (1038)
..|++..+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|++.|+++.+.
T Consensus 271 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~- 347 (656)
T PRK15174 271 EHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE- 347 (656)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 5555555431 2234455555555555555555555555555432 223344445555555555555555555555543
Q ss_pred CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001645 929 CEPTVVT-YTALIQGFANLGKVAEAWDVFYRMKIKG 963 (1038)
Q Consensus 929 ~~pd~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~ 963 (1038)
.|+... +..+..++...|+.++|.+.|++..+..
T Consensus 348 -~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 348 -KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred -CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 233222 2223444555555555555555555543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-14 Score=158.16 Aligned_cols=664 Identities=14% Similarity=0.118 Sum_probs=344.0
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 001645 217 LEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEM 296 (1038)
Q Consensus 217 l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 296 (1038)
++-.+...|+.|+.+||..+|..||..|+++.|- +|..|.-...+.+...|+.++.+...+++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3445666677788888888888888888887777 7777776666666777777877777777776654
Q ss_pred cCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHH
Q 001645 297 VLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLK-SKEISMDRDHFET 375 (1038)
Q Consensus 297 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~ 375 (1038)
.|...||..|..+|...||+.....+=+.|.. ++..+...|.-.....++..+. ..+.-||...
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~------------i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n--- 144 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLES------------INQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN--- 144 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHH------------HHhhhhhhccCcHHHHHHhhcccCcccchhHHH---
Confidence 56777888888888888876653322222222 2333444444333333333321 1233334332
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 001645 376 LVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKN-DLSKALVQFERMKESGYLPMASTYTELMQHLFKLNE 454 (1038)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 454 (1038)
.+......|-++.+.+++..+........... .+.-+.... .+++-..+-....+ .|+..+|..++.+-...|+
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~ 219 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGD 219 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCc
Confidence 33334455666666666655543322211111 122222222 23333332222222 4788888888888888888
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001645 455 YKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNN 534 (1038)
Q Consensus 455 ~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 534 (1038)
.+.|..++.+|.+.|++.+..-|..|+-+ .++...+..+++.|.+.|+.|+..|+...+-.+..+|....+
T Consensus 220 ~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~------ 290 (1088)
T KOG4318|consen 220 VDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG------ 290 (1088)
T ss_pred hhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc------
Confidence 88888888888888888777777777655 677777778888888888888888887777666665542111
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCC
Q 001645 535 MQASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEP 614 (1038)
Q Consensus 535 m~~~~~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 614 (1038)
+.|...+...-..+..+.++. .. ....+++-... .+
T Consensus 291 --~e~sq~~hg~tAavrsaa~rg-~~-a~k~l~~nl~~----------------------------------~v------ 326 (1088)
T KOG4318|consen 291 --EEGSQLAHGFTAAVRSAACRG-LL-ANKRLRQNLRK----------------------------------SV------ 326 (1088)
T ss_pred --ccccchhhhhhHHHHHHHhcc-cH-hHHHHHHHHHH----------------------------------HH------
Confidence 112211111112222222222 10 00000000000 00
Q ss_pred CCCCCChhhHHHHHHHhc-----CCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhh--ccCCCCCCCH
Q 001645 615 LPKPYCEQDLHEICRMLS-----SSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWV--GKQADYSHSS 687 (1038)
Q Consensus 615 ~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 687 (1038)
+..+-+.+. ....|..+.+.+. +..+....++.... -....-..++
T Consensus 327 ---------~~s~k~~fLlg~d~~~aiws~c~~l~h------------------Qgk~e~veqlvg~l~npt~r~s~~~V 379 (1088)
T KOG4318|consen 327 ---------IGSTKKLFLLGTDILEAIWSMCEKLRH------------------QGKGEEVEQLVGQLLNPTLRDSGQNV 379 (1088)
T ss_pred ---------HHHhhHHHHhccccchHHHHHHHHHHH------------------cCCCchHHHHHhhhcCCccccCcchH
Confidence 000000000 0011322222222 01111111111111 0111111222
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHH------------HcC
Q 001645 688 ATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGR---AGLTEMAMRVFEDMK------------ANG 752 (1038)
Q Consensus 688 ~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~------------~~g 752 (1038)
..|..+ ++.+|.+..... ....++ .-.+... .....+..++....+ ...
T Consensus 380 ~a~~~~------------lrqyFrr~e~~~---~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~E 443 (1088)
T KOG4318|consen 380 DAFGAL------------LRQYFRRIERHI---CSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTE 443 (1088)
T ss_pred HHHHHH------------HHHHHHHHHhhH---HHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHH
Confidence 333322 334444443321 111111 0111111 111111111111110 000
Q ss_pred ----C-------CCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 753 ----C-------NPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLR 821 (1038)
Q Consensus 753 ----~-------~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~ 821 (1038)
. .+=....+.++..+++.. +...++..-+. .+....+ ..|..||+-++..++++.|..+.++..
T Consensus 444 ler~he~~~~~~h~irdi~~ql~l~l~se~--n~lK~l~~~ek-ye~~lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d 518 (1088)
T KOG4318|consen 444 LERSHEPWPLIAHLIRDIANQLHLTLNSEY--NKLKILCDEEK-YEDLLFA--GLYALLIKLMDLHDKLEYALSFVDEID 518 (1088)
T ss_pred HhcccccchhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHhh--hHHHHHhhhHHHHHHHHHHHhchhhhc
Confidence 0 011112233333333211 22222221111 1111111 567888888888888888888888776
Q ss_pred HcCCC---CcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 001645 822 KVGFT---VPLSYSLYIRALCRAGELEEALALLDEVKEERS-KLD-EFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYP 896 (1038)
Q Consensus 822 ~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 896 (1038)
..... +..-+..+.+.+.+.+....+..++.++.+.-. .|+ ..++--+++.....|+.+.-.++++-+...|+..
T Consensus 519 ~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 519 TRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred ccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 55433 234577888888899999999999988877421 222 3345556677778888888888888887777654
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------------HHHHHHhcCCHHHHHHH
Q 001645 897 TVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTA---------------------LIQGFANLGKVAEAWDV 955 (1038)
Q Consensus 897 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~---------------------li~~~~~~g~~~~A~~~ 955 (1038)
+ .-++....+.++...|.+.++...++ ++|.+..... =+..|.++|+..+|.++
T Consensus 599 t----gPl~~vhLrkdd~s~a~ea~e~~~qk-yk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di 673 (1088)
T KOG4318|consen 599 T----GPLWMVHLRKDDQSAAQEAPEPEEQK-YKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDI 673 (1088)
T ss_pred c----ccceEEEeeccchhhhhhcchHHHHH-hcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhc
Confidence 2 23333445566666676666665443 2332222111 12235666666666655
Q ss_pred HHHH--HHcCC----------CC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHh
Q 001645 956 FYRM--KIKGP----------FP---------DFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRTIFFGLN 1014 (1038)
Q Consensus 956 ~~~m--~~~~~----------~~---------~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~ 1014 (1038)
.+.= ..+.. .| +.....-|+..|.++|+++.|..+|.+|+ +.|+..+...|...+.
T Consensus 674 ~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr 750 (1088)
T KOG4318|consen 674 TETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILR 750 (1088)
T ss_pred cccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHH
Confidence 4320 00000 00 11223448889999999999999999998 8899988888888887
Q ss_pred ccCChhh
Q 001645 1015 REDNLYQ 1021 (1038)
Q Consensus 1015 ~~g~~~~ 1021 (1038)
+.....+
T Consensus 751 ~~n~evd 757 (1088)
T KOG4318|consen 751 RMNEEVD 757 (1088)
T ss_pred hhchhcc
Confidence 7555443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4e-14 Score=157.50 Aligned_cols=85 Identities=20% Similarity=0.142 Sum_probs=78.1
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 001645 187 LREGFCHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAV 266 (1038)
Q Consensus 187 ~~~~~~~~~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 266 (1038)
+..|..|+..||..+|.-|+..|+.+.|- +|..|.....+.+...|+.++.+...+++.+.+. .|.+.
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aD 84 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLAD 84 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchh
Confidence 45688999999999999999999999999 9999998888999999999999999999888775 78899
Q ss_pred HHHHHHHHHHcCCChhH
Q 001645 267 AYKVLVRSLCNAGKGDI 283 (1038)
Q Consensus 267 ~~~~ll~~~~~~g~~~~ 283 (1038)
+|..|+.+|...||...
T Consensus 85 tyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred HHHHHHHHHHhccchHH
Confidence 99999999999999876
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-13 Score=168.74 Aligned_cols=309 Identities=11% Similarity=0.027 Sum_probs=204.7
Q ss_pred HHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh------hhHHHHHHHH
Q 001645 694 IKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSG------STYKYLIISL 767 (1038)
Q Consensus 694 i~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~~~ 767 (1038)
..++...|++++|...++++.+..+. +...+..+...+...+..++|+..++.... .|+. ......+...
T Consensus 123 a~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~ 198 (765)
T PRK10049 123 AYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLS 198 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhh
Confidence 33444455555555555555555443 445555556666666666667666665443 2221 0011111111
Q ss_pred Hhh---cCCCh---HHHHHHHHHHHHC-CCCCCHH-HH-H---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-chHHHH
Q 001645 768 SGR---KGRKV---DHAIKIFQEMVNA-GHIPDKE-LV-E---TYLDCLCEVGMLQLAKSCMDVLRKVGFTVP-LSYSLY 834 (1038)
Q Consensus 768 ~~~---~~~~~---~~A~~~~~~m~~~-~~~~d~~-~~-~---~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l 834 (1038)
... ..+++ ++|+..++.+++. ...|+.. .+ . ..+.++...|++++|+..|+.+.+.++..| ...-.+
T Consensus 199 ~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~l 278 (765)
T PRK10049 199 FMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWV 278 (765)
T ss_pred cccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHH
Confidence 100 01123 6677788877754 2223221 11 1 113345677899999999999888765433 222335
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCcc---
Q 001645 835 IRALCRAGELEEALALLDEVKEERSKL---DEFVFGSLIHGLVQRGQIEEALAKVETMKQAG-----------IYPT--- 897 (1038)
Q Consensus 835 i~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~--- 897 (1038)
...|...|++++|+..|+++.+..... ....+..+..++...|++++|..+++.+.+.. -.|+
T Consensus 279 a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~ 358 (765)
T PRK10049 279 ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW 358 (765)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence 778899999999999999987642111 13456667778889999999999999988642 0122
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001645 898 VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGC 977 (1038)
Q Consensus 898 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 977 (1038)
...+..+...+...|+.++|+++++++.... +.+...+..+...+...|++++|++.++++.+..|. +...+..++..
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~ 436 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWT 436 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHH
Confidence 2345667788899999999999999998762 446778888999999999999999999999998776 77888888889
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhcHHHHH
Q 001645 978 LCKVGKSEEALELLSEMTESGIVPSNINFRTIF 1010 (1038)
Q Consensus 978 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~ 1010 (1038)
+...|++++|.++++++.+ ..|+......+=
T Consensus 437 al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~ 467 (765)
T PRK10049 437 ALDLQEWRQMDVLTDDVVA--REPQDPGVQRLA 467 (765)
T ss_pred HHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 9999999999999999987 467665444443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-13 Score=167.89 Aligned_cols=335 Identities=13% Similarity=0.086 Sum_probs=208.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001645 192 CHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVL 271 (1038)
Q Consensus 192 ~~~~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 271 (1038)
..++....-.+.+....|+.++|++++....... +.+...+..+..++.+.|++++|..+|++..+.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4456666667778889999999999999987633 6677789999999999999999999999987763 4456677788
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCC
Q 001645 272 VRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPER-DAYGCVLKSFCVSMR 350 (1038)
Q Consensus 272 l~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~ 350 (1038)
...+...|++++|...++++.+... .+.. +..+..++...|+.++|+..++++.+.. |+. ..+..+...+...+.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCC
Confidence 8888999999999999999987633 3555 8888888889999999999999988854 443 335556677778888
Q ss_pred HHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHcCCC---ChhhH----HH
Q 001645 351 IREALEFIRNLKSKEISMDR------DHFETLVKGLC-----IAGRI---SDALEIVDIMMRRNLV---DGKIY----GI 409 (1038)
Q Consensus 351 ~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~~~~~~~~---~~~~~----~~ 409 (1038)
.++|++.++.... .|+. .....++..+. ..+++ ++|++.++.+.+.... ....+ ..
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 8888888876553 2221 01112222221 12223 5666666666643211 11111 11
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHH
Q 001645 410 IIGGYLRKNDLSKALVQFERMKESGYL-PMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQP---DSVAVTAMVAGHV 485 (1038)
Q Consensus 410 li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p---~~~~~~~li~~~~ 485 (1038)
.+..+...|++++|+..|+++.+.+.. |+. ....+...+...|++++|...|+.+.+..... .......+..++.
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 122334556677777777776655421 221 11123455666677777777776665542111 1233444555566
Q ss_pred hcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 486 RQDNLSEAWKVFKCMEDKGI-----------RPT---RKSYSVFIKELCRVSRTNEILKVLNNMQ 536 (1038)
Q Consensus 486 ~~g~~~~A~~~~~~m~~~g~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (1038)
..|++++|...++.+..... .|+ ...+..+...+...|+.++|++.++++.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al 386 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA 386 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66677777766666654321 111 1123344445555555555555555554
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.1e-11 Score=127.71 Aligned_cols=611 Identities=11% Similarity=0.070 Sum_probs=415.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 001645 209 KELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFY 288 (1038)
Q Consensus 209 ~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 288 (1038)
++...|+.++....+.+ |.++..|.+-.+.--..|++..|..+..+--+. ++.+...|---+ +....+.|..+.
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~aK~vv 338 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHHHHHH
Confidence 56778888888888877 777888887777777778877777665443322 233444443322 333445555555
Q ss_pred HHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 001645 289 KEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDA-YGCVLKSFCVSMRIREALEFIRNLKSKEIS 367 (1038)
Q Consensus 289 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~ 367 (1038)
-...+. ++-++..| +.+---..+...=.+++++..+ ..|+.+. |-.. ...-+.+.|.-++.+..+.=..
T Consensus 339 A~Avr~-~P~Sv~lW---~kA~dLE~~~~~K~RVlRKALe--~iP~sv~LWKaA----VelE~~~darilL~rAveccp~ 408 (913)
T KOG0495|consen 339 ANAVRF-LPTSVRLW---LKAADLESDTKNKKRVLRKALE--HIPRSVRLWKAA----VELEEPEDARILLERAVECCPQ 408 (913)
T ss_pred HHHHHh-CCCChhhh---hhHHhhhhHHHHHHHHHHHHHH--hCCchHHHHHHH----HhccChHHHHHHHHHHHHhccc
Confidence 555443 12222222 2222112223333445555544 2344332 3332 2334445566666665553111
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHH----HHHCCCCCCHHHHH
Q 001645 368 MDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFER----MKESGYLPMASTYT 443 (1038)
Q Consensus 368 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~ 443 (1038)
+ .-|.-+|.+..-++.|..++.+..+.-+.+..+|.+-...--.+|+.+...+++.+ +...|+..+..-|.
T Consensus 409 -s----~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl 483 (913)
T KOG0495|consen 409 -S----MDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWL 483 (913)
T ss_pred -h----HHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHH
Confidence 1 23444566667777788888887777777777777777777777777776666554 34457777777777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 001645 444 ELMQHLFKLNEYKKGCELYNEMLKRGIQPD--SVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCR 521 (1038)
Q Consensus 444 ~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 521 (1038)
.=...|-..|..-.+..+....+.-|++-. ..||..-...|.+.+.++-|..+|....+.- +-+...|......--.
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKS 562 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHh
Confidence 666777777777777777777776665432 3467777777777777777777777666542 1244445555444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccc
Q 001645 522 VSRTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNE 601 (1038)
Q Consensus 522 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 601 (1038)
.|..++...+|++....-
T Consensus 563 hgt~Esl~Allqkav~~~-------------------------------------------------------------- 580 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQC-------------------------------------------------------------- 580 (913)
T ss_pred cCcHHHHHHHHHHHHHhC--------------------------------------------------------------
Confidence 555555555555554321
Q ss_pred cccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCC
Q 001645 602 MERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQA 681 (1038)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 681 (1038)
T Consensus 581 -------------------------------------------------------------------------------- 580 (913)
T KOG0495|consen 581 -------------------------------------------------------------------------------- 580 (913)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHH
Q 001645 682 DYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYK 761 (1038)
Q Consensus 682 ~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 761 (1038)
+.....|-+..+.+-..||...|+.++...-+..+. +...|-.-+..-..+..++.|..+|.+.... .|+...|.
T Consensus 581 --pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~m 655 (913)
T KOG0495|consen 581 --PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWM 655 (913)
T ss_pred --CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhH
Confidence 112234445555566678888999999888887766 7888888888888999999999999988775 45555543
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Q 001645 762 YLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDK-ELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCR 840 (1038)
Q Consensus 762 ~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~ 840 (1038)
--+.... ..+..++|++++++.++. -||- ..|-.+...+-+.++++.|++.|..-.+.-|..+..|-.|...--+
T Consensus 656 Ks~~~er--~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 656 KSANLER--YLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK 731 (913)
T ss_pred HHhHHHH--HhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence 3332222 234889999999888875 3443 4566677788888999999999988888877778889999999999
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHH
Q 001645 841 AGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEI 920 (1038)
Q Consensus 841 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~ 920 (1038)
.|.+-+|..+|++..-. .+.+...|-..|..=.+.|+.+.|..+..+..+. ++.+...|..-|...-+.++..+..+.
T Consensus 732 ~~~~~rAR~ildrarlk-NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DA 809 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLK-NPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDA 809 (913)
T ss_pred hcchhhHHHHHHHHHhc-CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHH
Confidence 99999999999998776 3557788999999999999999999998887765 466777888888888777776555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 001645 921 FERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIV 1000 (1038)
Q Consensus 921 ~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~ 1000 (1038)
+++ ++.|+.+.-++...|-...++++|.++|++.+..++. ...+|.-+...+..+|.-++-.+++..... ..
T Consensus 810 Lkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~--~E 881 (913)
T KOG0495|consen 810 LKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCET--AE 881 (913)
T ss_pred HHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cC
Confidence 444 4678888888888888889999999999999998877 678888899999999998888898888764 35
Q ss_pred CC
Q 001645 1001 PS 1002 (1038)
Q Consensus 1001 p~ 1002 (1038)
|.
T Consensus 882 P~ 883 (913)
T KOG0495|consen 882 PT 883 (913)
T ss_pred CC
Confidence 53
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-13 Score=140.08 Aligned_cols=348 Identities=14% Similarity=0.206 Sum_probs=235.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH--HHhcCCHHHH-HHHHHHHHhCCCCCCHHHHHHH
Q 001645 300 LSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKS--FCVSMRIREA-LEFIRNLKSKEISMDRDHFETL 376 (1038)
Q Consensus 300 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~g~~~~A-~~~~~~m~~~~~~p~~~~~~~l 376 (1038)
+.+-|.|+.. ...|.+..+.-+|+.|...|..-+...-..+++. |..+.++.-| .+-|-.|.+.|-. +..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc---
Confidence 4456666654 3557778888888888887766555554444433 2233333322 2223334333322 22222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 001645 377 VKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYK 456 (1038)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 456 (1038)
+.|++.+ -+|+ .-+.+..++.+||.+.|+-...+.|.+++++..+...+.+..+||.+|.+-.-..
T Consensus 191 -----K~G~vAd--L~~E----~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~--- 256 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFE----TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV--- 256 (625)
T ss_pred -----ccccHHH--HHHh----hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc---
Confidence 3344333 2222 2334556799999999999999999999999998888999999999998765433
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH-HHHHH
Q 001645 457 KGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSE----AWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTN-EILKV 531 (1038)
Q Consensus 457 ~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~-~A~~~ 531 (1038)
...++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|.+.|+.|...+|..+|..+++.++.. .|..+
T Consensus 257 -~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~ 335 (625)
T KOG4422|consen 257 -GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSW 335 (625)
T ss_pred -cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHH
Confidence 38899999999999999999999999999998765 5677889999999999999999999999988763 45556
Q ss_pred HHHHHhC----CCC---C-CHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccccc
Q 001645 532 LNNMQAS----KIV---I-GDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEME 603 (1038)
Q Consensus 532 ~~~m~~~----~~~---p-~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 603 (1038)
+.+++.. .+. | |..-|...+..|....+.+.+.++..+
T Consensus 336 i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~l---------------------------------- 381 (625)
T KOG4422|consen 336 INDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGL---------------------------------- 381 (625)
T ss_pred HHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHH----------------------------------
Confidence 6555442 233 3 334566777777776666666544432
Q ss_pred cccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCC
Q 001645 604 RKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADY 683 (1038)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 683 (1038)
++....|..+....
T Consensus 382 ---------------------------l~tg~N~~~ig~~~--------------------------------------- 395 (625)
T KOG4422|consen 382 ---------------------------LKTGDNWKFIGPDQ--------------------------------------- 395 (625)
T ss_pred ---------------------------HHcCCchhhcChHH---------------------------------------
Confidence 22333333222111
Q ss_pred CCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 001645 684 SHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYL 763 (1038)
Q Consensus 684 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 763 (1038)
....-|..+..+.++....+.-..+|+.|.-+-+-|+..+...++++..-.|.++-.-+++.++...|..-+...--.+
T Consensus 396 -~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eei 474 (625)
T KOG4422|consen 396 -HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEI 474 (625)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHH
Confidence 1123455566666777777888888888888777788888888889888899999999999988887644333333333
Q ss_pred HHHHH
Q 001645 764 IISLS 768 (1038)
Q Consensus 764 l~~~~ 768 (1038)
+..++
T Consensus 475 l~~L~ 479 (625)
T KOG4422|consen 475 LMLLA 479 (625)
T ss_pred HHHHh
Confidence 33333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-12 Score=155.88 Aligned_cols=453 Identities=11% Similarity=0.063 Sum_probs=286.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 001645 380 LCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGC 459 (1038)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 459 (1038)
..+.|+++.|+..|++..+.++.+......++..+...|+.++|+..+++.... -.........+...+...|+++.|.
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 567788888888888888777775422226777777778888888877777621 1122233333345666677788888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001645 460 ELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASK 539 (1038)
Q Consensus 460 ~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 539 (1038)
++++++++.... +...+..++..|...++.++|+..++++... .|+...+..++..+...++..+|++.++++.+..
T Consensus 123 ely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 888877776422 4555666677777777777777777777665 2454444333333333444444666666665431
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCC
Q 001645 540 IVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPY 619 (1038)
Q Consensus 540 ~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (1038)
T Consensus 200 -------------------------------------------------------------------------------- 199 (822)
T PRK14574 200 -------------------------------------------------------------------------------- 199 (822)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChhhHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhc
Q 001645 620 CEQDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGR 699 (1038)
Q Consensus 620 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 699 (1038)
+.+...+..+...+.+
T Consensus 200 ----------------------------------------------------------------P~n~e~~~~~~~~l~~ 215 (822)
T PRK14574 200 ----------------------------------------------------------------PTSEEVLKNHLEILQR 215 (822)
T ss_pred ----------------------------------------------------------------CCCHHHHHHHHHHHHH
Confidence 1223444555555555
Q ss_pred CCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHH
Q 001645 700 GKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAI 779 (1038)
Q Consensus 700 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~ 779 (1038)
.|-...|.++.++-... -+...+.-+ . .+.|. ++...+..++..- -..+. -.+.|+
T Consensus 216 ~~~~~~a~~l~~~~p~~---f~~~~~~~l-~-------~~~~a----~~vr~a~~~~~~~----~~r~~-----~~d~al 271 (822)
T PRK14574 216 NRIVEPALRLAKENPNL---VSAEHYRQL-E-------RDAAA----EQVRMAVLPTRSE----TERFD-----IADKAL 271 (822)
T ss_pred cCCcHHHHHHHHhCccc---cCHHHHHHH-H-------HHHHH----HHHhhcccccccc----hhhHH-----HHHHHH
Confidence 55544444433331110 011111100 0 00111 1111111111100 00000 234555
Q ss_pred HHHHHHHHC-CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CcchHHHHHHHHHHcCCHhHHHHHHH
Q 001645 780 KIFQEMVNA-GHIPDK-----ELVETYLDCLCEVGMLQLAKSCMDVLRKVGFT-VPLSYSLYIRALCRAGELEEALALLD 852 (1038)
Q Consensus 780 ~~~~~m~~~-~~~~d~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 852 (1038)
.-++.+... +..|.. ....-.+-++.+.|++.++++.++.+...+.+ ++.+--.+.++|...+++++|+.+|+
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 556665542 112321 12223456778889999999999999988855 45677888999999999999999999
Q ss_pred HHHHcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------Ccc--H-hhHHHHHHHHHhcCC
Q 001645 853 EVKEER-----SKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGI-----------YPT--V-HVYTSFVVHFFREKQ 913 (1038)
Q Consensus 853 ~m~~~g-----~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~--~-~~y~~li~~~~~~g~ 913 (1038)
++.... ..++......|..+|...+++++|..+++.+.+..- .|+ - ..+..++..+...|+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd 431 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND 431 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC
Confidence 986642 123444467888999999999999999999987310 111 1 233456777889999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 001645 914 VGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSE 993 (1038)
Q Consensus 914 ~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~ 993 (1038)
+.+|++.++++.... +-|......+...+...|++.+|+++++.+....|. +..+....+.++...|+|.+|..+.+.
T Consensus 432 l~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 432 LPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 999999999998763 558888899999999999999999999888777666 788888999999999999999999988
Q ss_pred HHHCCCCCChhcHHH
Q 001645 994 MTESGIVPSNINFRT 1008 (1038)
Q Consensus 994 m~~~g~~p~~~~~~~ 1008 (1038)
..+ ..|+......
T Consensus 510 l~~--~~Pe~~~~~~ 522 (822)
T PRK14574 510 VIS--RSPEDIPSQE 522 (822)
T ss_pred HHh--hCCCchhHHH
Confidence 876 3565543333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-11 Score=147.77 Aligned_cols=186 Identities=8% Similarity=0.017 Sum_probs=123.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHH
Q 001645 344 SFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKA 423 (1038)
Q Consensus 344 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 423 (1038)
...+.|+++.|+..|++..+..+.-....+ .++..+...|+.++|+..+++.......+......+...|...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 345677777777777777765544212233 6777777778888888888777733333433344445677777888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001645 424 LVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDK 503 (1038)
Q Consensus 424 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 503 (1038)
+++|+++.+... -++..+..++..+...++.++|.+.++.+.+. .|+...+..++..+...++..+|+..++++.+.
T Consensus 122 iely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 888888777642 23455556677777778888888888877766 455555544444444456665688888888876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001645 504 GIRPTRKSYSVFIKELCRVSRTNEILKVLNN 534 (1038)
Q Consensus 504 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 534 (1038)
.. -+...+..+..++.+.|-...|+++.++
T Consensus 199 ~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 199 AP-TSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred CC-CCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 42 2556667777788888887777766655
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-10 Score=128.86 Aligned_cols=359 Identities=13% Similarity=0.103 Sum_probs=272.3
Q ss_pred cCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001645 173 KVPHLALRFFNWVKLREGFCHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLV 252 (1038)
Q Consensus 173 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 252 (1038)
.+.+.|.+++.-+.++.+ .....|-+|..++-..|+.+.+...+--+...+ |.|...|..+.....+.|+++.|.-.
T Consensus 153 g~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred CCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 456679999988877654 467789999999999999999988776555444 77889999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHH----HHHHHHHHhcCChhHHHHHHHHHHH
Q 001645 253 FEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLY----KIVMNCAAKLGDVDAVLSIADDMVR 328 (1038)
Q Consensus 253 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 328 (1038)
|.+..+.. +++...+-.-...|-+.|+...|.+-|.++.+...+.|..-+ -.++..+...++-+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999875 556556666678899999999999999999887553333323 3345666777777999998888777
Q ss_pred cC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------------------HHHHHHHHHHH
Q 001645 329 IS-QIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMD---------------------------RDHFETLVKGL 380 (1038)
Q Consensus 329 ~~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~---------------------------~~~~~~li~~~ 380 (1038)
.+ -..+...++.++..|.+...++.|......+.....++| ..+ -.+.-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence 32 234455688888999999999999988888776222222 222 1223334
Q ss_pred HHcCCHHHHHHHHHHHHHcCCC---ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 001645 381 CIAGRISDALEIVDIMMRRNLV---DGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKK 457 (1038)
Q Consensus 381 ~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 457 (1038)
......+....+.......+.. +...|.-+..+|...|++.+|+++|..+......-+...|-.+..+|...|.+++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 4455555555555556666633 4567888999999999999999999999988666678889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001645 458 GCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMED--------KGIRPTRKSYSVFIKELCRVSRTNEIL 529 (1038)
Q Consensus 458 a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~~~~~li~~~~~~g~~~~A~ 529 (1038)
|.+.|...+... +-+...--.|...+.+.|+.++|.+++..+.. .+..|+....-.....+.+.|+.++-+
T Consensus 468 A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 468 AIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999999873 33556667788889999999999999998652 233444444455566678888888877
Q ss_pred HHHHHHHh
Q 001645 530 KVLNNMQA 537 (1038)
Q Consensus 530 ~~~~~m~~ 537 (1038)
.....|+.
T Consensus 547 ~t~~~Lv~ 554 (895)
T KOG2076|consen 547 NTASTLVD 554 (895)
T ss_pred HHHHHHHH
Confidence 77766665
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.6e-09 Score=114.08 Aligned_cols=497 Identities=10% Similarity=0.029 Sum_probs=349.4
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 001645 390 LEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRG 469 (1038)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g 469 (1038)
.+++++..+..+.++..|-..+. ..+.+.|.-++.+..+- ++.+...| -++.+..-++.|..+++...+.
T Consensus 366 ~RVlRKALe~iP~sv~LWKaAVe----lE~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~- 435 (913)
T KOG0495|consen 366 KRVLRKALEHIPRSVRLWKAAVE----LEEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKAREI- 435 (913)
T ss_pred HHHHHHHHHhCCchHHHHHHHHh----ccChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhh-
Confidence 34555555555555555554443 23444465556555543 22222322 2344555566666666666655
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 001645 470 IQPDSVAVTAMVAGHVRQDNLSEAWKVFKC----MEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASKIVIGDE 545 (1038)
Q Consensus 470 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 545 (1038)
++-+...|.+-...--.+|+.+...+++++ +...|+..+...|-.=...|-+.|..-.+..+.+..+.-|+.-.+.
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 444556666655555666666666666553 3345666666666666666666666666666666666555543322
Q ss_pred --hHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCCChhh
Q 001645 546 --IFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQD 623 (1038)
Q Consensus 546 --~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (1038)
|+..--..|.+.+..+-+..+...
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~------------------------------------------------------ 541 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAH------------------------------------------------------ 541 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHH------------------------------------------------------
Confidence 333334444444333332211100
Q ss_pred HHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCCh
Q 001645 624 LHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDF 703 (1038)
Q Consensus 624 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 703 (1038)
...-++.+...|..+...-...|..
T Consensus 542 -------------------------------------------------------alqvfp~k~slWlra~~~ek~hgt~ 566 (913)
T KOG0495|consen 542 -------------------------------------------------------ALQVFPCKKSLWLRAAMFEKSHGTR 566 (913)
T ss_pred -------------------------------------------------------HHhhccchhHHHHHHHHHHHhcCcH
Confidence 0011233445566666666667888
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHH
Q 001645 704 KHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQ 783 (1038)
Q Consensus 704 ~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~ 783 (1038)
++...+|++....-+. ....|-....-+-..|++..|..++....+.... +...|...+.... .+..+++|..+|.
T Consensus 567 Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~--en~e~eraR~lla 642 (913)
T KOG0495|consen 567 ESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEF--ENDELERARDLLA 642 (913)
T ss_pred HHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhh--ccccHHHHHHHHH
Confidence 8888999998876554 6777877788888899999999999999987433 4555655555544 4568999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH
Q 001645 784 EMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDE 863 (1038)
Q Consensus 784 ~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 863 (1038)
+.... .|+..+|.--+...--.|+.++|+++++..++..+.-+-.|-.+...+-+.++++.|.+.|..-.+. ++-..
T Consensus 643 kar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~i 719 (913)
T KOG0495|consen 643 KARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSI 719 (913)
T ss_pred HHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCc
Confidence 98775 4666667666677777899999999999999988777778899999999999999999999877664 55667
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001645 864 FVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGF 943 (1038)
Q Consensus 864 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 943 (1038)
..|-.+...=.+.|.+-.|..+++...-.+ +-+...|-..|..-.+.|+.++|..+..+.++. |+-+...|.--|...
T Consensus 720 pLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le 797 (913)
T KOG0495|consen 720 PLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLE 797 (913)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhc
Confidence 788888888889999999999999988765 778899999999999999999999999998875 566778888889988
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhcHHHHHHHHhccCChhh
Q 001645 944 ANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPS-NINFRTIFFGLNREDNLYQ 1021 (1038)
Q Consensus 944 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 1021 (1038)
.+.++-......+++. .-|+.....+...+....++++|.+.|.+.+. +.|| -.+|..++.-..+.|.-++
T Consensus 798 ~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed 869 (913)
T KOG0495|consen 798 PRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEED 869 (913)
T ss_pred cCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHH
Confidence 8888877777777764 33778888889999999999999999999986 4554 5677777777777775444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.7e-12 Score=129.33 Aligned_cols=492 Identities=13% Similarity=0.134 Sum_probs=299.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh--hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC----HH
Q 001645 367 SMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDG--KIYGIIIGGYLRKNDLSKALVQFERMKESGYLPM----AS 440 (1038)
Q Consensus 367 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~ 440 (1038)
..+..+...|..-|.......+|+..++.+++....+. ..-..+...|.+..++.+|+++++.....-...+ ..
T Consensus 198 dltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rik 277 (840)
T KOG2003|consen 198 DLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIK 277 (840)
T ss_pred cchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHH
Confidence 33445556667777777888888888888776654421 2223455677888888888888876665421111 22
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--------
Q 001645 441 TYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSY-------- 512 (1038)
Q Consensus 441 t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-------- 512 (1038)
..+.+--.+.+.|+++.|..-|+...+. .|+..+-..|+-++..-|+.++..+.|.+|......||..-|
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 3344444566778888888888877765 567666555666666778888888888877754333333221
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCC
Q 001645 513 SVFIKELCRVSRTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQG 592 (1038)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (1038)
..|+.--.++. .++.|.+.+ +. .+++. +...++ +...+..
T Consensus 356 ~~ll~eai~nd-------~lk~~ek~~-------------------ka-~aek~--i~ta~k---iiapvi~-------- 395 (840)
T KOG2003|consen 356 DNLLNEAIKND-------HLKNMEKEN-------------------KA-DAEKA--IITAAK---IIAPVIA-------- 395 (840)
T ss_pred hHHHHHHHhhH-------HHHHHHHhh-------------------hh-hHHHH--HHHHHH---Hhccccc--------
Confidence 11111111111 111221110 00 00000 000000 0000000
Q ss_pred CCccccccccccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHH
Q 001645 593 PNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALH 672 (1038)
Q Consensus 593 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 672 (1038)
..|. ..-+| +.+.++.... .
T Consensus 396 ------------------------~~fa------------~g~dw------------------cle~lk~s~~-~----- 415 (840)
T KOG2003|consen 396 ------------------------PDFA------------AGCDW------------------CLESLKASQH-A----- 415 (840)
T ss_pred ------------------------cchh------------cccHH------------------HHHHHHHhhh-h-----
Confidence 0000 00001 1111111000 0
Q ss_pred HHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHcC-ChHHHHHHHHHHHH
Q 001645 673 FFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMM-QYGRAG-LTEMAMRVFEDMKA 750 (1038)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~-~~~~~g-~~~~A~~~~~~m~~ 750 (1038)
.+..+.. -.-...+.+.|+++.|.++++.+.......-...-+.|-. -|.+-| ++..|.++-+..+.
T Consensus 416 ---------~la~dle--i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln 484 (840)
T KOG2003|consen 416 ---------ELAIDLE--INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALN 484 (840)
T ss_pred ---------hhhhhhh--hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc
Confidence 0000000 0111236788999999999998877644322223333322 233333 56666666665543
Q ss_pred cCCCCChhhHHHH--HH-HHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001645 751 NGCNPSGSTYKYL--II-SLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTV 827 (1038)
Q Consensus 751 ~g~~p~~~~~~~l--l~-~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 827 (1038)
...|+.. .. +-....+|+++.|.+.|++.+.....-....||.- -.+-..|++++|.++|-.+...-..+
T Consensus 485 ------~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~il~nn 557 (840)
T KOG2003|consen 485 ------IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAILLNN 557 (840)
T ss_pred ------ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHHHHhh
Confidence 2222221 11 00001357999999999998876544333444432 34678899999999998876554444
Q ss_pred cchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHH
Q 001645 828 PLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVH 907 (1038)
Q Consensus 828 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~ 907 (1038)
....--+.+.|-...+...|++++.+.... ++.|.....-|...|-+.|+-..|++.+-+-.+. ++-+..+..-|...
T Consensus 558 ~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ay 635 (840)
T KOG2003|consen 558 AEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAY 635 (840)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHH
Confidence 455566778888889999999999887664 6667888999999999999999999887655443 57788888889999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 001645 908 FFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFA-NLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGK 983 (1038)
Q Consensus 908 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 983 (1038)
|....-+++|+.+|++.-- +.|+..-|..|+..|. +.|++.+|.++++....+-|. |.....-|+..+...|.
T Consensus 636 yidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe-dldclkflvri~~dlgl 709 (840)
T KOG2003|consen 636 YIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE-DLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc-chHHHHHHHHHhccccc
Confidence 9999999999999998754 5899999998876665 789999999999999887666 88888888888888775
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.6e-12 Score=129.35 Aligned_cols=494 Identities=12% Similarity=0.061 Sum_probs=314.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHH
Q 001645 407 YGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYT-ELMQHLFKLNEYKKGCELYNEMLKRGIQPD----SVAVTAMV 481 (1038)
Q Consensus 407 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~----~~~~~~li 481 (1038)
...|..-|.......+|+..++-+.+...-|+..... .+-..+.+.+.+..|.+.++..+..-...+ ....+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 3445566777778899999999888887777754332 244556778889999999998887622222 23455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChH
Q 001645 482 AGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEME 561 (1038)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 561 (1038)
-.+.+.|++++|+..|+...+. .|+..+-..|+-++...|+.++..+.|.+|+.--..||..-|..
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~------------ 349 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK------------ 349 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC------------
Confidence 6688999999999999998876 48998877888888889999999999999987544444322110
Q ss_pred HHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHH
Q 001645 562 SVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQ 641 (1038)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 641 (1038)
.-+
T Consensus 350 --------------------------------------------------------~~d--------------------- 352 (840)
T KOG2003|consen 350 --------------------------------------------------------EKD--------------------- 352 (840)
T ss_pred --------------------------------------------------------CcC---------------------
Confidence 000
Q ss_pred HHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCC--CCCCCHHHHHHHHHHHhcCCChhh----HHHHHHHHHH
Q 001645 642 ESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQA--DYSHSSATYNMAIKTAGRGKDFKH----MRNLFYEMRR 715 (1038)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~----a~~l~~~m~~ 715 (1038)
..+..++.+.+.. +.+..+.+.. .-.....+-..+|.- .-.-++.. +.+.++.-..
T Consensus 353 --------dp~~~ll~eai~n---------d~lk~~ek~~ka~aek~i~ta~kiiap-vi~~~fa~g~dwcle~lk~s~~ 414 (840)
T KOG2003|consen 353 --------DPDDNLLNEAIKN---------DHLKNMEKENKADAEKAIITAAKIIAP-VIAPDFAAGCDWCLESLKASQH 414 (840)
T ss_pred --------CcchHHHHHHHhh---------HHHHHHHHhhhhhHHHHHHHHHHHhcc-ccccchhcccHHHHHHHHHhhh
Confidence 0000111111100 0000000000 000000111111111 01111111 2222221111
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHH
Q 001645 716 NGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKE 795 (1038)
Q Consensus 716 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~ 795 (1038)
.....+ .--.-..-|.++|+++.|+++++-+.+..-+.-....+.+-.......++++..|...-+..+... .-+..
T Consensus 415 ~~la~d--lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~ 491 (840)
T KOG2003|consen 415 AELAID--LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAA 491 (840)
T ss_pred hhhhhh--hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHH
Confidence 111101 111123457899999999999998876532222222222222222224567888887777665432 11111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 001645 796 LVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQ 875 (1038)
Q Consensus 796 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 875 (1038)
....-.+.-...|++++|.+.+.+.+..+..-......+...+-..|++++|++.|-++..- +..+....-.+.+.|..
T Consensus 492 a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~ 570 (840)
T KOG2003|consen 492 ALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYEL 570 (840)
T ss_pred HhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHH
Confidence 11111222334689999999999988765443333444556678899999999999887653 33466777778888999
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001645 876 RGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDV 955 (1038)
Q Consensus 876 ~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~ 955 (1038)
..+...|++++-+.... ++.|..+..-|.+.|-+.|+..+|.+.+-+--. -++-|..|...|..-|....-+++|+.+
T Consensus 571 led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred hhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999998776543 567888999999999999999999998765432 2455888888888888888889999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHhccCC
Q 001645 956 FYRMKIKGPFPDFRTYSMFIGC-LCKVGKSEEALELLSEMTESGIVPSNINFRTIFFGLNREDN 1018 (1038)
Q Consensus 956 ~~~m~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 1018 (1038)
|++..- +.|+..-|..++.. +.+.|++..|++++++.-++ +.-|...++.|+..+..-|-
T Consensus 649 ~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 649 FEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 998754 56888999887655 56799999999999998753 55577788888886655553
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.7e-07 Score=99.56 Aligned_cols=571 Identities=12% Similarity=0.134 Sum_probs=310.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHH
Q 001645 190 GFCHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRK-YGFEPDAVAY 268 (1038)
Q Consensus 190 ~~~~~~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~ 268 (1038)
+.+|+...|..+=++ ++.+.-.+.+|+ ..|-.-+....++|++..-...|++... .-+......|
T Consensus 76 ~~~~T~~~~~~vn~c------~er~lv~mHkmp--------RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW 141 (835)
T KOG2047|consen 76 HLCPTDPAYESVNNC------FERCLVFMHKMP--------RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIW 141 (835)
T ss_pred ccCCCChHHHHHHHH------HHHHHHHHhcCC--------HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccch
Confidence 456666666655443 333444444442 3555566666778888888888877653 3334445678
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC------CCCChhhHHHHH
Q 001645 269 KVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRIS------QIPERDAYGCVL 342 (1038)
Q Consensus 269 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~p~~~~~~~ll 342 (1038)
...+...-..+-++-+..+|+...+- ++..-+-.|..+++.+++++|.+.+...+... .+.+...|..+.
T Consensus 142 ~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elc 217 (835)
T KOG2047|consen 142 DLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELC 217 (835)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHH
Confidence 88888888888888888888877653 33446667777788888888888887766532 123333455555
Q ss_pred HHHHhcCCHHH---HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCC
Q 001645 343 KSFCVSMRIRE---ALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKND 419 (1038)
Q Consensus 343 ~~~~~~g~~~~---A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 419 (1038)
....+.-+.-. ..++++.+...-..-=...|.+|.+-|.+.|.+++|..+|++....-.. ..-+..+.++|++-..
T Consensus 218 dlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~t-vrDFt~ifd~Ya~FEE 296 (835)
T KOG2047|consen 218 DLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMT-VRDFTQIFDAYAQFEE 296 (835)
T ss_pred HHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhee-hhhHHHHHHHHHHHHH
Confidence 54444433322 2233333332211112356788888888888888888888776654321 1114444444433211
Q ss_pred ----------------------HHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 001645 420 ----------------------LSKALVQFERMKESGY-----------LPMASTYTELMQHLFKLNEYKKGCELYNEML 466 (1038)
Q Consensus 420 ----------------------~~~A~~~~~~m~~~g~-----------~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~ 466 (1038)
++-.+.-|+.+...+. +-++.+|..-.. +..|+..+-...+.+++
T Consensus 297 ~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv 374 (835)
T KOG2047|consen 297 SCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAV 374 (835)
T ss_pred HHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHH
Confidence 1222223333332210 112222222222 23355666666666666
Q ss_pred HCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001645 467 KRGIQPD------SVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPT---RKSYSVFIKELCRVSRTNEILKVLNNMQA 537 (1038)
Q Consensus 467 ~~g~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (1038)
+. +.|. ...|..+.+.|-..|+++.|..+|++......+-- ..+|......=.+..+++.|++++++...
T Consensus 375 ~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~ 453 (835)
T KOG2047|consen 375 KT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH 453 (835)
T ss_pred Hc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence 54 2222 23566777777777777777777777766533211 12333333444455666666665555432
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCC
Q 001645 538 SKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPK 617 (1038)
Q Consensus 538 ~~~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1038)
.|.... + .
T Consensus 454 ---vP~~~~----~-----------------------------------------------------------------~ 461 (835)
T KOG2047|consen 454 ---VPTNPE----L-----------------------------------------------------------------E 461 (835)
T ss_pred ---CCCchh----h-----------------------------------------------------------------h
Confidence 121111 0 0
Q ss_pred CCCh-hhHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHH
Q 001645 618 PYCE-QDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKT 696 (1038)
Q Consensus 618 ~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 696 (1038)
.|+. ..++ .+ +..+...|..+++.
T Consensus 462 ~yd~~~pvQ--~r-----------------------------------------------------lhrSlkiWs~y~Dl 486 (835)
T KOG2047|consen 462 YYDNSEPVQ--AR-----------------------------------------------------LHRSLKIWSMYADL 486 (835)
T ss_pred hhcCCCcHH--HH-----------------------------------------------------HHHhHHHHHHHHHH
Confidence 0000 0000 00 11234566777777
Q ss_pred HhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHh-hcCCC
Q 001645 697 AGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGS-TYKYLIISLSG-RKGRK 774 (1038)
Q Consensus 697 ~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~-~~~~~ 774 (1038)
-...|-++..+.+++.+.+..+. ++..--....-+-.+.-++++.++|++-...=-.|+.. .|+..+..+.. -.+.+
T Consensus 487 eEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 487 EESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 77777888888888888876554 55444444444445566788888887655442234432 45554444433 23457
Q ss_pred hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--cchHHHHHHHHHHcCCHhHHHHH
Q 001645 775 VDHAIKIFQEMVNAGHIPDKE--LVETYLDCLCEVGMLQLAKSCMDVLRKVGFTV--PLSYSLYIRALCRAGELEEALAL 850 (1038)
Q Consensus 775 ~~~A~~~~~~m~~~~~~~d~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~ 850 (1038)
.+.|..+|++.++ |+.|... .|-.....--+-|....|.++++.....-... -..||+.|.--...=-+.....+
T Consensus 566 lEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~i 644 (835)
T KOG2047|consen 566 LERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREI 644 (835)
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHH
Confidence 8889999998888 5555432 22222222234466677777777655433221 14577776655555455556666
Q ss_pred HHHHHHcCCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHc-CCCccHhhHHHHHHHHHhcCC
Q 001645 851 LDEVKEERSKLDEFVFGSLI---HGLVQRGQIEEALAKVETMKQA-GIYPTVHVYTSFVVHFFREKQ 913 (1038)
Q Consensus 851 ~~~m~~~g~~p~~~t~~~li---~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~y~~li~~~~~~g~ 913 (1038)
|++.++. -|+...-...| ..=++.|.++.|..++..-.+. .-..+..-|.+.=..=.+.|+
T Consensus 645 YekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 645 YEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 7776664 34444332222 2234567777777776655442 222344456666555566666
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.2e-13 Score=144.14 Aligned_cols=262 Identities=17% Similarity=0.166 Sum_probs=114.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001645 728 MMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEV 807 (1038)
Q Consensus 728 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~ 807 (1038)
+...+.+.|++++|+++++........|+...|..++..++. ..++.+.|...++++...+.. +...+..++.. ...
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~-~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAW-SLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-ccccccccccc-ccc
Confidence 355566667777777777554433223555555555554444 334677777777777665433 33445555555 577
Q ss_pred CCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001645 808 GMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEER-SKLDEFVFGSLIHGLVQRGQIEEALAKV 886 (1038)
Q Consensus 808 g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~~~ 886 (1038)
+++++|.+++....+.. .++..+..++..+...++++++.++++++.+.. .+.+...|..+...+.+.|+.++|+..+
T Consensus 91 ~~~~~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777776655443 345566777888889999999999999977542 3467778888889999999999999999
Q ss_pred HHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001645 887 ETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFP 966 (1038)
Q Consensus 887 ~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 966 (1038)
++..+.. +-|....+.++..+...|+.+++.++++...... +.|...+..+..+|...|+.++|..++++.....+.
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~- 246 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD- 246 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc-
Confidence 9998863 4457888899999999999999999999888763 556777889999999999999999999999998877
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 967 DFRTYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 967 ~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
|+.....+++++...|+.++|.+++++..+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 999999999999999999999999887653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-10 Score=131.59 Aligned_cols=251 Identities=10% Similarity=0.032 Sum_probs=105.5
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001645 733 GRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQL 812 (1038)
Q Consensus 733 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~ 812 (1038)
.+.|+++.|...|.++.+. .|+...+..+..+-.....|+++.|...++++.+... -+......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHH
Confidence 4455555555555555442 3333222211111111123355555555555544431 123344444555555555555
Q ss_pred HHHHHHHHHHcCCCCcc--------hHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001645 813 AKSCMDVLRKVGFTVPL--------SYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALA 884 (1038)
Q Consensus 813 A~~~~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 884 (1038)
|.+++..+.+....++. +|..++.......+.+...++++.+.+. .+.+......+..++...|+.++|..
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 55555555544433221 1111222222222333333333333221 22344444445555555555555555
Q ss_pred HHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001645 885 KVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGP 964 (1038)
Q Consensus 885 ~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 964 (1038)
++++..+. +|+... .++.+.+..++.+++++..+++.+.. +-|...+.++...|.+.|++++|.+.|+.+.+..
T Consensus 285 ~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~- 358 (398)
T PRK10747 285 IILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR- 358 (398)
T ss_pred HHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-
Confidence 55444432 222211 11222223345555555555554431 1223334445555555555555555555554432
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001645 965 FPDFRTYSMFIGCLCKVGKSEEALELLSEM 994 (1038)
Q Consensus 965 ~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m 994 (1038)
|+..+|..+..++.+.|+.++|.+.+++-
T Consensus 359 -P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 359 -PDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444445555555555555555555443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-09 Score=113.58 Aligned_cols=218 Identities=15% Similarity=0.129 Sum_probs=181.1
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHH
Q 001645 771 KGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALAL 850 (1038)
Q Consensus 771 ~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 850 (1038)
-.|+.-.|..-|+..+.....+.. .|--+..+|....+.++....|++..+.++.++.+|..-..++.-.+++++|+.=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 345888888999998887655543 3667778899999999999999999999999999999888888999999999999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001645 851 LDEVKEERSKL-DEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGC 929 (1038)
Q Consensus 851 ~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~ 929 (1038)
|++.+.. .| +...|.-+.-+..+.+++++++..|++.++. ++--...|+.....+...+++++|.+.|+..++.
T Consensus 417 F~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L-- 491 (606)
T KOG0547|consen 417 FQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL-- 491 (606)
T ss_pred HHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--
Confidence 9999885 34 4567777777778899999999999999875 6677889999999999999999999999999863
Q ss_pred CCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 930 EPT---------VVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 930 ~pd---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
+|+ +.+-.+++-.- =.+++..|.+++++..+..|+ ....|..|...-.+.|+.++|+++|++-..
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 443 22222222222 238899999999999998888 668999999999999999999999998753
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.1e-10 Score=125.93 Aligned_cols=289 Identities=10% Similarity=0.033 Sum_probs=146.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHcCCChhHH
Q 001645 208 AKELELLEELEREMEINSCAKNIKTWTIL-VSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYK--VLVRSLCNAGKGDIA 284 (1038)
Q Consensus 208 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~A 284 (1038)
.|+++.|++.+....+.. +++..+..+ ..+..+.|+.+.|...|.++.+. .|+...+. .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 466666666666554431 222222222 33335666666666666666544 34433222 224455666666666
Q ss_pred HHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001645 285 LEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSK 364 (1038)
Q Consensus 285 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 364 (1038)
...++++.+.... +...+..+...|.+.|++++|.+++..+.+....++.. ...+-
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~-~~~l~---------------------- 228 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH-RAMLE---------------------- 228 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH-HHHHH----------------------
Confidence 6666666555422 44555556666666666666666666665544332111 00000
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 001645 365 EISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTE 444 (1038)
Q Consensus 365 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 444 (1038)
..+|..++.......+.+...++++.+.+..+.+......+...+...|+.++|.+++++..+. .|+....
T Consensus 229 -----~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~-- 299 (398)
T PRK10747 229 -----QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV-- 299 (398)
T ss_pred -----HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--
Confidence 0122222222233333444444444444333334445555555555555555555555555542 2333211
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 001645 445 LMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSR 524 (1038)
Q Consensus 445 ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 524 (1038)
++.+....++.+++.+..+...+.. +-|...+..+...+.+.|++++|.+.|+...+. .|+...|..+...+.+.|+
T Consensus 300 ~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~ 376 (398)
T PRK10747 300 LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHK 376 (398)
T ss_pred HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCC
Confidence 1222223355666666666655542 224445556666666666666666666666654 3566666666666666666
Q ss_pred HHHHHHHHHHHH
Q 001645 525 TNEILKVLNNMQ 536 (1038)
Q Consensus 525 ~~~A~~~~~~m~ 536 (1038)
.++|.+++++-.
T Consensus 377 ~~~A~~~~~~~l 388 (398)
T PRK10747 377 PEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHH
Confidence 666666666543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.3e-10 Score=110.65 Aligned_cols=289 Identities=15% Similarity=0.116 Sum_probs=189.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCC---HHHHHHHHHHHHhcCChhHHH
Q 001645 244 KLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLD---LSLYKIVMNCAAKLGDVDAVL 320 (1038)
Q Consensus 244 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~ 320 (1038)
.+.++|+++|.+|.+.. +.+..+--+|.+.|-+.|.++.|+++.+.+.++.--+. ....--|..-|...|-+|.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 34455555555555321 11222333444445555555555555555444311000 112223444455566666666
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001645 321 SIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDR----DHFETLVKGLCIAGRISDALEIVDIM 396 (1038)
Q Consensus 321 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~ 396 (1038)
.+|..+.+.+. --......++..|-...+|++|++.-+++.+.+.++.. ..|--|...+....+++.|..++.+.
T Consensus 128 ~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 66666554321 12234566777777777788888777777776655432 34556666677778899999999999
Q ss_pred HHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 001645 397 MRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVA 476 (1038)
Q Consensus 397 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~ 476 (1038)
.+.++..+.+-..+.+.+...|++++|++.++...+.+..--..+...|..+|...|+.++....+..+.+... ....
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~ 284 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GADA 284 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--CccH
Confidence 99988888878888899999999999999999998886555567788899999999999999999999988743 3334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhC
Q 001645 477 VTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRV---SRTNEILKVLNNMQAS 538 (1038)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 538 (1038)
-..+...-......+.|..++.+-..+ +|+...+..+|...... |...+-+..+++|...
T Consensus 285 ~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 285 ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 444444445555667777766665554 48999999999876543 4566777778888654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=3e-10 Score=128.51 Aligned_cols=291 Identities=11% Similarity=0.032 Sum_probs=174.1
Q ss_pred HhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChH
Q 001645 697 AGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVD 776 (1038)
Q Consensus 697 ~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~ 776 (1038)
....|+++.|.+.+....+.... ....+-....++.+.|+++.|...|.+..+. .|+......+..+-.....++++
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 35577788888777776655322 1233333455666677888888888777654 24433211111111111345777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHH----HHHHHHHcCCHhHHHHHHH
Q 001645 777 HAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSL----YIRALCRAGELEEALALLD 852 (1038)
Q Consensus 777 ~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~ 852 (1038)
.|...++.+.+..+ -+..+...+..++...|++++|.+.+..+.+.+..++..+.. ....+...+..+++.+.+.
T Consensus 171 ~Al~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 171 AARHGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 88888877777652 234566677777778888888888887777776554433321 1112233333344445666
Q ss_pred HHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhh---HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001645 853 EVKEERSK---LDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHV---YTSFVVHFFREKQVGRALEIFERMRQ 926 (1038)
Q Consensus 853 ~m~~~g~~---p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---y~~li~~~~~~g~~~~A~~~~~~m~~ 926 (1038)
.+.+.... .+...+..+...+...|+.++|.+.+++..+. .||... ...........++.+.+.+.++...+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 66554211 26667777777777788888888877777764 233321 11122222334667777777777765
Q ss_pred cCCCCC-H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001645 927 EGCEPT-V--VTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 927 ~g~~pd-~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
. .|+ . ....++...|.+.|++++|.+.|+........||...+.++...+.+.|+.++|.++|++-.
T Consensus 328 ~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 328 N--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred h--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4 343 3 44557777777778888888877754443345666667777788888888888877777643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-09 Score=123.73 Aligned_cols=288 Identities=13% Similarity=0.016 Sum_probs=145.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHcCCChhHH
Q 001645 207 EAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDA--VAYKVLVRSLCNAGKGDIA 284 (1038)
Q Consensus 207 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~A 284 (1038)
..|+++.|++.+....+.. +-....+-....++.+.|+.+.|...|.+..+. .|+. ...-.....+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4678888888877766543 223344445556666778888888888777654 2333 2233346666777777777
Q ss_pred HHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH---HHHHHHhcCCHHHHHHHHHHH
Q 001645 285 LEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGC---VLKSFCVSMRIREALEFIRNL 361 (1038)
Q Consensus 285 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~---ll~~~~~~g~~~~A~~~~~~m 361 (1038)
...++.+.+.... +..++..+...+...|+++++.+.+..+.+.+..+....... ...++...+..+++.+.+..+
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7777777776432 555666777777777777777777777776653322211111 111112222222223333333
Q ss_pred HhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhH--HHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 001645 362 KSKEIS---MDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIY--GIIIGGYLRKNDLSKALVQFERMKESGYL 436 (1038)
Q Consensus 362 ~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 436 (1038)
.+..+. .+...+..+...+...|+.++|.+++++..+..+.+.... ..........++.+.+.+.++...+.. +
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p 330 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-D 330 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-C
Confidence 333221 2455566666666666666666666666666555432111 111111222344444444444433321 1
Q ss_pred CCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001645 437 PMA--STYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKC 499 (1038)
Q Consensus 437 p~~--~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 499 (1038)
-|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 111 223334444444444444444444322222234444444444444444444444444443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-07 Score=96.79 Aligned_cols=457 Identities=10% Similarity=0.059 Sum_probs=267.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHH
Q 001645 383 AGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMA-STYTELMQHLFKLNEYKKGCEL 461 (1038)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~l 461 (1038)
.+++..|..+|++....+..+...|---+..-.++..+..|..++++.... -|-+ ..|--.+.+=-..|+...|.++
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 455566667777666666555566666666666667777777777666543 2222 1222233333445677777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 001645 462 YNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASKIV 541 (1038)
Q Consensus 462 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 541 (1038)
|..-.+- .|+...|.+.|+.-.+-..++.|..++++..-. .|++.+|....+-=.+.|....|..++...++.-
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~-- 237 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL-- 237 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--
Confidence 7766654 677777777777777777777777777766543 3677777666666666677766666666654420
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCCCh
Q 001645 542 IGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCE 621 (1038)
Q Consensus 542 p~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (1038)
.|+..-.
T Consensus 238 ~~d~~~e------------------------------------------------------------------------- 244 (677)
T KOG1915|consen 238 GDDEEAE------------------------------------------------------------------------- 244 (677)
T ss_pred hhHHHHH-------------------------------------------------------------------------
Confidence 0111111
Q ss_pred hhHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCC
Q 001645 622 QDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGK 701 (1038)
Q Consensus 622 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 701 (1038)
..++++...-.+++
T Consensus 245 ------------------------------------------------------------------~lfvaFA~fEe~qk 258 (677)
T KOG1915|consen 245 ------------------------------------------------------------------ILFVAFAEFEERQK 258 (677)
T ss_pred ------------------------------------------------------------------HHHHHHHHHHHHHH
Confidence 11122222222333
Q ss_pred ChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCC---hHHHHHH-----HHHHHHcCCCCChhhHHHHHHHHHhhcC
Q 001645 702 DFKHMRNLFYEMRRNGYLIT-PDTWTIMMMQYGRAGL---TEMAMRV-----FEDMKANGCNPSGSTYKYLIISLSGRKG 772 (1038)
Q Consensus 702 ~~~~a~~l~~~m~~~~~~~~-~~~~~~li~~~~~~g~---~~~A~~~-----~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 772 (1038)
.++.|+-+|+-..+.=+.-. ...|.....-=-+.|+ +++++-- |+.+...+ .-|-.+|...+.... ..
T Consensus 259 E~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e--~~ 335 (677)
T KOG1915|consen 259 EYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEE--SV 335 (677)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHH--hc
Confidence 34444444444443221110 1222222222122233 2222211 22222221 223444444444333 23
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-------HHHHHH---HHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHH----
Q 001645 773 RKVDHAIKIFQEMVNAGHIPDK-------ELVETY---LDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRAL---- 838 (1038)
Q Consensus 773 ~~~~~A~~~~~~m~~~~~~~d~-------~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~---- 838 (1038)
|+.+...++|+..+.. +.|-. .+|-.+ +-.-....+.+.+.++++..++.-|....++.-+--+|
T Consensus 336 g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~fe 414 (677)
T KOG1915|consen 336 GDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFE 414 (677)
T ss_pred CCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 4666666666666543 22311 111111 11112456777788888877776655555555444444
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHH
Q 001645 839 CRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRAL 918 (1038)
Q Consensus 839 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~ 918 (1038)
.++.++..|.+++.... |.-|-..+|...|..=.+.++++....++++..+.+ +-|..+|.-....--..|+.+.|.
T Consensus 415 IRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaR 491 (677)
T KOG1915|consen 415 IRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRAR 491 (677)
T ss_pred HHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHH
Confidence 46778888998888765 457888888888888888999999999999988875 667788888888778889999999
Q ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----hcC----------
Q 001645 919 EIFERMRQEGC-EPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLC-----KVG---------- 982 (1038)
Q Consensus 919 ~~~~~m~~~g~-~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~-----~~g---------- 982 (1038)
.+|+-.+++.. .--...|.+.|+.-...|.+++|..+++++++.... ..+|..++.--. +.|
T Consensus 492 aifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h--~kvWisFA~fe~s~~~~~~~~~~~~~e~~~ 569 (677)
T KOG1915|consen 492 AIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH--VKVWISFAKFEASASEGQEDEDLAELEITD 569 (677)
T ss_pred HHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc--chHHHhHHHHhccccccccccchhhhhcch
Confidence 99998886421 113456777777777889999999999998886433 346666655443 344
Q ss_pred -ChHHHHHHHHHHH
Q 001645 983 -KSEEALELLSEMT 995 (1038)
Q Consensus 983 -~~~~A~~l~~~m~ 995 (1038)
+...|..+|++..
T Consensus 570 ~~~~~AR~iferAn 583 (677)
T KOG1915|consen 570 ENIKRARKIFERAN 583 (677)
T ss_pred hHHHHHHHHHHHHH
Confidence 5567778887754
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-07 Score=99.55 Aligned_cols=446 Identities=12% Similarity=0.121 Sum_probs=284.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHH
Q 001645 348 SMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQF 427 (1038)
Q Consensus 348 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 427 (1038)
++++..|..+|++.+.-... +...|-.-+++=.++..+..|..++++....-+.-...|.-.+..--..|+...|.++|
T Consensus 86 q~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 34555666666666655433 55566666676777777777777777776655444445666666666677777787777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 001645 428 ERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRP 507 (1038)
Q Consensus 428 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 507 (1038)
++-.+. .|+...|.+.+..=.+.+..+.|..+++..+-. .|++.+|--....-.++|++..|..+|+...+. ..
T Consensus 165 erW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~ 238 (677)
T KOG1915|consen 165 ERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LG 238 (677)
T ss_pred HHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hh
Confidence 776653 677788888887777777788888888777643 577777777777777778877777777766543 01
Q ss_pred CHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCcc
Q 001645 508 TRKSYSVFIKEL----CRVSRTNEILKVLNNMQASKIVIG-DEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEA 582 (1038)
Q Consensus 508 ~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 582 (1038)
|...-..+..++ .+.+.++.|.-+|+-.++.-..-. ...|..+...=.+-|+...++....-.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K------------ 306 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK------------ 306 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh------------
Confidence 222222333333 345556677666666655421111 223333333333334433222110000
Q ss_pred ccccccCCCCCCccccccccccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHc
Q 001645 583 SGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHN 662 (1038)
Q Consensus 583 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 662 (1038)
T Consensus 307 -------------------------------------------------------------------------------- 306 (677)
T KOG1915|consen 307 -------------------------------------------------------------------------------- 306 (677)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCH-HHHHHHHHHH--------H
Q 001645 663 SEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITP-DTWTIMMMQY--------G 733 (1038)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~-~~~~~li~~~--------~ 733 (1038)
.-+..-......+.|-.+|--.+..-...|+.+..+++|+.....-++.+. ..|...|-.+ .
T Consensus 307 ---------Rk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEl 377 (677)
T KOG1915|consen 307 ---------RKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEEL 377 (677)
T ss_pred ---------hhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 000000111122334456666777777778999999999988865433222 2333333222 2
Q ss_pred HcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH--hhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 001645 734 RAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLS--GRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQ 811 (1038)
Q Consensus 734 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~ 811 (1038)
...+.+.+.++|+..++. ++....||.-+=-.++ .....++..|.+++...+ |..|-..+|...|+.-.+.++++
T Consensus 378 e~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efD 454 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFD 454 (677)
T ss_pred HhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHH
Confidence 467788888999888873 4445566654433332 223457888888888765 45777888899999999999999
Q ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 812 LAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEER-SKLDEFVFGSLIHGLVQRGQIEEALAKVETMK 890 (1038)
Q Consensus 812 ~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 890 (1038)
..+.+++..++.+|.+-.+|.-....-...|+.+.|..+|+-..+.. +......|.+.|+-=...|.++.|..+++.+.
T Consensus 455 RcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 455 RCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred HHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence 99999999999998888889888888888999999999998887642 22234456666666667888888988888888
Q ss_pred HcCCCccHhhHHHHHH
Q 001645 891 QAGIYPTVHVYTSFVV 906 (1038)
Q Consensus 891 ~~g~~p~~~~y~~li~ 906 (1038)
+. .+-..+|-++..
T Consensus 535 ~r--t~h~kvWisFA~ 548 (677)
T KOG1915|consen 535 DR--TQHVKVWISFAK 548 (677)
T ss_pred Hh--cccchHHHhHHH
Confidence 64 233335655544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-09 Score=107.95 Aligned_cols=285 Identities=14% Similarity=0.161 Sum_probs=224.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHcCCCh
Q 001645 208 AKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDA------VAYKVLVRSLCNAGKG 281 (1038)
Q Consensus 208 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~g~~ 281 (1038)
+.+.+.|.++|-+|.+.. +.+..+--+|-+.|.+.|.+++|+++.+.+.++ ||. .+...|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 467899999999998754 566677788999999999999999999998864 442 3445566778889999
Q ss_pred hHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh----hHHHHHHHHHhcCCHHHHHHH
Q 001645 282 DIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERD----AYGCVLKSFCVSMRIREALEF 357 (1038)
Q Consensus 282 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~g~~~~A~~~ 357 (1038)
+.|+.+|..+.+.+. .-....--|+..|-...+|++|+++-+++...+.++... -|+-+...+....+++.|..+
T Consensus 124 DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 999999999987542 244577788999999999999999999999987766544 267777777788999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 001645 358 IRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLV-DGKIYGIIIGGYLRKNDLSKALVQFERMKESGYL 436 (1038)
Q Consensus 358 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 436 (1038)
+.+..+.+.+ .+..--.+.+.+...|+++.|.+.++.+.+.++. -+.+...|..+|.+.|+.++....+.++.+....
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 9998887655 4555556778889999999999999999999987 4567889999999999999999999999887433
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh
Q 001645 437 PMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQD---NLSEAWKVFKCMED 502 (1038)
Q Consensus 437 p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~ 502 (1038)
++. -..+-.........+.|...+.+-+.. +|+...+..||....... ...+....++.|..
T Consensus 282 ~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 282 ADA--ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ccH--HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 333 333444444455677777777777776 799999999998876543 35555666666654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-12 Score=138.09 Aligned_cols=258 Identities=14% Similarity=0.137 Sum_probs=69.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 001645 202 LTIAGEAKELELLEELEREMEINS-CAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGK 280 (1038)
Q Consensus 202 i~~l~~~~~~~~a~~l~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 280 (1038)
..++.+.|+++.|+++++...... .+.++..|..+...+...++.+.|+..++++...+ +-+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 444555556666666554332222 13334444444444445555555555555555443 1233344444444 45555
Q ss_pred hhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001645 281 GDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRN 360 (1038)
Q Consensus 281 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 360 (1038)
+++|.+++....+.. ++...+..++. .+...++++++.++++.
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~-----------------------------------~~~~~~~~~~~~~~l~~ 135 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQ-----------------------------------LYYRLGDYDEAEELLEK 135 (280)
T ss_dssp ---------------------------H------------------------------------HHHTT-HHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHH-----------------------------------HHHHHhHHHHHHHHHHH
Confidence 555555554443322 23333344444 44444555555555444
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 001645 361 LKSKE-ISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMA 439 (1038)
Q Consensus 361 m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 439 (1038)
+.... ...+...|..+...+.+.|+.++|++.+++..+.++.+..+.+.++..+...|+.+++.+++....... +.|+
T Consensus 136 ~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~ 214 (280)
T PF13429_consen 136 LEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDP 214 (280)
T ss_dssp HHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSC
T ss_pred HHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHH
Confidence 43221 223444555555555555555555555555555555555555555555555555555555555544432 2333
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001645 440 STYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCM 500 (1038)
Q Consensus 440 ~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 500 (1038)
..+..+..++...|+.++|...++...+.. +.|..+...+..++...|+.++|..+.++.
T Consensus 215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 215 DLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp CHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 444555555555566666666666555532 235555555556666666666666555543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.3e-06 Score=93.54 Aligned_cols=298 Identities=13% Similarity=0.133 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-------
Q 001645 687 SATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLIT---PDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPS------- 756 (1038)
Q Consensus 687 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------- 756 (1038)
...|..+.+.|...|+++.|+.+|+...+-...-- ..+|..-...=.+..+++.|+++.+......-.|.
T Consensus 387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 387 GTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS 466 (835)
T ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence 46688899999999999999999999887654421 24555555556677888889888877654311111
Q ss_pred ----------hhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001645 757 ----------GSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFT 826 (1038)
Q Consensus 757 ----------~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 826 (1038)
...|+..+...- .-|.++....+|+.+++..+.. +.+.-.....+-...-++++.++++.-......
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleE--s~gtfestk~vYdriidLriaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEE--SLGTFESTKAVYDRIIDLRIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKW 543 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC
Confidence 112222222111 2346777777788777765432 233333344455556677777777654444332
Q ss_pred Cc--chHHHHHHHHHH---cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCcc--
Q 001645 827 VP--LSYSLYIRALCR---AGELEEALALLDEVKEERSKLDEFVFGSLIHGL--VQRGQIEEALAKVETMKQAGIYPT-- 897 (1038)
Q Consensus 827 ~~--~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~-- 897 (1038)
+. ..|++.+.-+.+ .-+++.|..+|++..+ |++|...-+--|+-+- -+.|....|+.++++.... +.+.
T Consensus 544 p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~ 621 (835)
T KOG2047|consen 544 PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQR 621 (835)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHH
Confidence 22 457777666654 2368889999999888 6776544333232221 2358888888888886543 3332
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHH
Q 001645 898 VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVT---YTALIQGFANLGKVAEAWDVFYRMKIK-GPFPDFRTYSM 973 (1038)
Q Consensus 898 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~ 973 (1038)
...||..|.--...=-+.....+|++.++. -||... .--....-++.|.++.|..++....+. .|..+..-|++
T Consensus 622 l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~t 699 (835)
T KOG2047|consen 622 LDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDT 699 (835)
T ss_pred HHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHH
Confidence 356777775544444445567788888775 565433 233445556889999999999887664 67778888999
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 001645 974 FIGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 974 l~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
.=.-=.++|+- +.+++|+
T Consensus 700 wk~FEvrHGne----dT~keML 717 (835)
T KOG2047|consen 700 WKEFEVRHGNE----DTYKEML 717 (835)
T ss_pred HHHHHHhcCCH----HHHHHHH
Confidence 98888999993 3445554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5e-06 Score=95.02 Aligned_cols=292 Identities=11% Similarity=0.161 Sum_probs=172.9
Q ss_pred CCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcC--CCCCHHHHHH
Q 001645 650 QYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNG--YLITPDTWTI 727 (1038)
Q Consensus 650 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~--~~~~~~~~~~ 727 (1038)
.-+++++..+|.....+....++......... ..|+......++++...+-..+..++++.+.-.+ +.-+.-.-|.
T Consensus 949 R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E--~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnL 1026 (1666)
T KOG0985|consen 949 RSDPDLWAKVLNEENPYRRQLIDQVVQTALPE--TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNL 1026 (1666)
T ss_pred ccChHHHHHHHhccChHHHHHHHHHHHhcCCc--cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhh
Confidence 44677777777665555555555444333222 2344445556666666777777777777665332 1112222333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001645 728 MMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEV 807 (1038)
Q Consensus 728 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~ 807 (1038)
+|-.-.+. +...+.+..+++-... .|+.... .+ ..+-+++|..+|+.. ..+....+-|++ ..
T Consensus 1027 LiLtAika-d~trVm~YI~rLdnyD-a~~ia~i--ai------~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i 1088 (1666)
T KOG0985|consen 1027 LILTAIKA-DRTRVMEYINRLDNYD-APDIAEI--AI------ENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NI 1088 (1666)
T ss_pred HHHHHhhc-ChHHHHHHHHHhccCC-chhHHHH--Hh------hhhHHHHHHHHHHHh-----cccHHHHHHHHH---Hh
Confidence 33333333 3344555555543321 1222111 11 123567777777653 223333333332 34
Q ss_pred CCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001645 808 GMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVE 887 (1038)
Q Consensus 808 g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 887 (1038)
++++.|.+.-+.. ..|..|+.+..+-.+.|.+.+|++-|-+. -|...|.-+++...+.|.+++-..++.
T Consensus 1089 ~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLL 1157 (1666)
T ss_pred hhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 5556665554432 34678888888888888888888777443 366778888888888888888888888
Q ss_pred HHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001645 888 TMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPD 967 (1038)
Q Consensus 888 ~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 967 (1038)
...+..-+|.+.+ .||-+|++.+++.+-++++ ..||......+.+-|...|.++.|.-++...
T Consensus 1158 MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v-------- 1220 (1666)
T KOG0985|consen 1158 MARKKVREPYIDS--ELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV-------- 1220 (1666)
T ss_pred HHHHhhcCccchH--HHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------
Confidence 7777665666554 7788888888876654442 2577777777777787878777777766643
Q ss_pred HHHHHHHHHHHHhcCChHHHHHH
Q 001645 968 FRTYSMFIGCLCKVGKSEEALEL 990 (1038)
Q Consensus 968 ~~~~~~l~~~~~~~g~~~~A~~l 990 (1038)
..|..|...+...|.+..|..-
T Consensus 1221 -SN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1221 -SNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666665544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.3e-10 Score=122.09 Aligned_cols=283 Identities=13% Similarity=0.101 Sum_probs=203.6
Q ss_pred ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhhcCCChHHHH
Q 001645 702 DFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGC--NPSGSTYKYLIISLSGRKGRKVDHAI 779 (1038)
Q Consensus 702 ~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~~~A~ 779 (1038)
+..+|...|..+...... +..+...+..+|...+++++|.++|+.+.+... .-+...|.+.+--+- -+-++
T Consensus 334 ~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq------~~v~L 406 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ------DEVAL 406 (638)
T ss_pred HHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH------hhHHH
Confidence 346788888885554433 445666678888889999999999999887521 123445555543322 11122
Q ss_pred HHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcC
Q 001645 780 KIF-QEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEER 858 (1038)
Q Consensus 780 ~~~-~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 858 (1038)
..+ +.++... +-.+.+|.++.++|.-.++.+.|+++|+...+.++....+|+.+..-+.....+|.|...|+.....
T Consensus 407 s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~- 484 (638)
T KOG1126|consen 407 SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV- 484 (638)
T ss_pred HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-
Confidence 222 2233322 2345788888888888888888888888888888877788888888888888888888888887652
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 001645 859 SKL-DEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYT 937 (1038)
Q Consensus 859 ~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~ 937 (1038)
.| +-..|-.+.-.|.+.++++.|+-.|++..+.+ +-+.+....+...+-+.|+.++|++++++..... +-|+..-.
T Consensus 485 -~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~ 561 (638)
T KOG1126|consen 485 -DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKY 561 (638)
T ss_pred -CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHH
Confidence 22 22345556677888888888888888888765 5667777788888888888888888888887643 23555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 001645 938 ALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTES 997 (1038)
Q Consensus 938 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~ 997 (1038)
-.+..+.-.+++++|+..++++++.-|. +...|..++..|.+.|+.+.|+.-|.-|.+-
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 5666777788888888888888887666 7778888888888888888888888887763
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.8e-09 Score=109.22 Aligned_cols=277 Identities=16% Similarity=0.116 Sum_probs=150.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001645 735 AGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAK 814 (1038)
Q Consensus 735 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~ 814 (1038)
.|++.+|.++..+-.+++ +..+.++++.+-+...-|+.+.+-.++.+..+....++....-+........|+++.|.
T Consensus 97 eG~~~qAEkl~~rnae~~---e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG---EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhhhcC---cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 456666666666555543 33334445544444444566666666666655443444455555555556666666666
Q ss_pred HHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 001645 815 SCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDE-------FVFGSLIHGLVQRGQIEEALAKVE 887 (1038)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~li~~~~~~g~~~~A~~~~~ 887 (1038)
.-.+.+.+.++.++........+|.+.|++.+...++..|.+.|.--|. .+|+.++.-....+..+.-...|+
T Consensus 174 ~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 174 ENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 6666666666666666666666666666666666666666665543332 245555555444444444444444
Q ss_pred HHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001645 888 TMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPD 967 (1038)
Q Consensus 888 ~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 967 (1038)
...+. .+-+...-.+++.-+.++|+.++|.++.++..+.+..|+... .-.+.+-++.+.-++..++.....+. +
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~-~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHPE-D 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhCCC-C
Confidence 44332 133344444555556666666666666666655544444111 12344555555555555555554444 4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHhccCChhhh
Q 001645 968 FRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRTIFFGLNREDNLYQI 1022 (1038)
Q Consensus 968 ~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~~ 1022 (1038)
+-.+.+|...|.+.+.|.+|.+.++.... ..|+..+|.-+.++|...|+.++.
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHH
Confidence 45555666666666666666666654443 455666666666666666655553
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.3e-06 Score=93.73 Aligned_cols=781 Identities=14% Similarity=0.149 Sum_probs=366.4
Q ss_pred CCCCCCHHHHHHHHHhhccCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 001645 155 LSFRFEPEVVDKVLKRCFKVPHLALRFFNWVKLREGFCHATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWT 234 (1038)
Q Consensus 155 ~~~~~~~~~~~~vl~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~ 234 (1038)
+....++..+...+..-..+|++|++.-... +..--...|---...+...|++++|-++-...+ +|+..++.|.+
T Consensus 324 Lsv~v~e~~IVpyi~~~LqnpeLal~~A~R~----nLaGAe~Lfv~rFneLfaqG~Y~eAAkvAAsSP-rgILRt~~Ti~ 398 (1666)
T KOG0985|consen 324 LSVLVNEQNIVPYITNVLQNPELALRLAVRA----NLAGAENLFVRRFNELFAQGEYEEAAKVAASSP-RGILRTPGTIN 398 (1666)
T ss_pred EEEEecCcceehhhhccccChHHHHHhhhhc----CCccHHHHHHHHHHHHHhCccHHHHHHHHHhCc-hhhhcCHHHHH
Confidence 3334444444433333335677776654432 222233455555666677899999988877655 35566777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH-----hCC--CcC-----CHHH
Q 001645 235 ILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMA-----QKE--MVL-----DLSL 302 (1038)
Q Consensus 235 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~~--~~p-----~~~~ 302 (1038)
.+=..=...|+..--+..|..+...| +.|..----+.+.-...|+.+.....+.+=+ +.| ++| -..+
T Consensus 399 kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETLEL~RpVL~Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~i 477 (1666)
T KOG0985|consen 399 KFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKPYDTTLALSI 477 (1666)
T ss_pred HHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHHhcCccccCCchHHHHH
Confidence 66666666788777888888888777 5555444444555555555555554443311 111 111 1122
Q ss_pred H------HHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001645 303 Y------KIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETL 376 (1038)
Q Consensus 303 ~------~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 376 (1038)
| +-++.+|+..|.++++.-... +.|.+||.. .+++...+ -..+.+.++...|.+... ...-++.+
T Consensus 478 YlrAnvp~KVi~cfAE~Gqf~KiilY~k---KvGyTPdym---flLq~l~r-~sPD~~~qFa~~l~Q~~~--~~~die~I 548 (1666)
T KOG0985|consen 478 YLRANVPAKVIQCFAETGQFKKIILYAK---KVGYTPDYM---FLLQQLKR-SSPDQALQFAMMLVQDEE--PLADIEQI 548 (1666)
T ss_pred HHHcCCcHHHHHHHHHhcchhHHHHHHH---HcCCCccHH---HHHHHHHc-cChhHHHHHHHHhhccCC--CcccHHHH
Confidence 2 335667777777776654443 456777643 34444444 567777777777766332 22334455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCChhh-HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 001645 377 VKGLCIAGRISDALEIVDIMMRRNLVDGKI-YGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEY 455 (1038)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 455 (1038)
.+.+........+..++-...+.+.++... -+-++..-.. .|-++-+.+...+.- ...-+..+.+.|.+.|-+
T Consensus 549 ~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~-----~aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~ 622 (1666)
T KOG0985|consen 549 VDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLV-----HAPQVADAILGNDMF-THYDRAEIAQLCEKAGLL 622 (1666)
T ss_pred HHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhc-----cchHHHHHHHhcccc-ccccHHHHHHHHHhcchH
Confidence 555555555555555555554444443211 1111111110 111111222222111 111144455556666666
Q ss_pred hHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001645 456 KKGCELYNEMLKR--------GIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNE 527 (1038)
Q Consensus 456 ~~a~~l~~~m~~~--------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 527 (1038)
..|++.+.++..- -+.|+ .+ -.|.-.-.++++.+.++.|...+++-|..+..-+..-|+..=-.+.
T Consensus 623 qraLehytDl~DIKR~vVhth~L~pE-----wL-v~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~ 696 (1666)
T KOG0985|consen 623 QRALEHYTDLYDIKRVVVHTHLLNPE-----WL-VNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQA 696 (1666)
T ss_pred HHHHHhcccHHHHHHHHHHhccCCHH-----HH-HHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHH
Confidence 6665555443221 01111 11 1233333455666666666655554444443333333333333333
Q ss_pred HHHHHHHHHhC-----------CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCCCcc
Q 001645 528 ILKVLNNMQAS-----------KIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVE 596 (1038)
Q Consensus 528 A~~~~~~m~~~-----------~~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 596 (1038)
.+++|+..... ++.-|+...-..|.+.++.|+..+++++- +....-..-........
T Consensus 697 li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERic------resn~YdpErvKNfLke------ 764 (1666)
T KOG0985|consen 697 LIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERIC------RESNCYDPERVKNFLKE------ 764 (1666)
T ss_pred HHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHH------hccccCCHHHHHHHHHh------
Confidence 33333333221 34455556666777777777776666432 11100000000000000
Q ss_pred ccccccccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHc-cccchhhHHHHHH
Q 001645 597 LDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHN-SEMHGSAALHFFS 675 (1038)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~ 675 (1038)
..+.++-+...+|. .| .-|+++.--|-.......|...+.+..-.-+|..+.++|.. |... .++-+-
T Consensus 765 AkL~DqlPLiiVCD-------Rf--~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~---~ik~Li 832 (1666)
T KOG0985|consen 765 AKLTDQLPLIIVCD-------RF--DFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSED---FIKNLI 832 (1666)
T ss_pred ccccccCceEEEec-------cc--ccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHH---HHHHHH
Confidence 00000001111111 11 12333333332222233344444555555566666666643 3221 111000
Q ss_pred hhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hHHHHH---HHHHH---
Q 001645 676 WVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGL-TEMAMR---VFEDM--- 748 (1038)
Q Consensus 676 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~---~~~~m--- 748 (1038)
....|- ...+.++.-..+.+++.....+++.....|.. ++.++|+|...|...++ ++.-++ .|+..
T Consensus 833 --~~v~gq----~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVG 905 (1666)
T KOG0985|consen 833 --LSVRGQ----FPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVG 905 (1666)
T ss_pred --HHHhcc----CChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHh
Confidence 001111 11234455556666777777777777777776 78888888877765443 222110 01110
Q ss_pred ---HH-----------cC--------CCCChhhHHHHHHHHHhhcCC-ChHH--------HHHHHHHHHHCCC--CCCHH
Q 001645 749 ---KA-----------NG--------CNPSGSTYKYLIISLSGRKGR-KVDH--------AIKIFQEMVNAGH--IPDKE 795 (1038)
Q Consensus 749 ---~~-----------~g--------~~p~~~~~~~ll~~~~~~~~~-~~~~--------A~~~~~~m~~~~~--~~d~~ 795 (1038)
.+ .| +.-..+.|...-..+..+... -|.+ -..+.++.++.++ ..|+.
T Consensus 906 kYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe 985 (1666)
T KOG0985|consen 906 KYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPE 985 (1666)
T ss_pred hhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChH
Confidence 00 00 000011111111111111100 0011 1123333333332 12444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001645 796 LVETYLDCLCEVGMLQLAKSCMDVLRKVGFT---VPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHG 872 (1038)
Q Consensus 796 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 872 (1038)
-.+.-+.++...+-..+-+++++++.-.... +...-|.|+-.-.+. +..+..++.+++-.- -.|+ +...
T Consensus 986 ~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdny-Da~~------ia~i 1057 (1666)
T KOG0985|consen 986 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNY-DAPD------IAEI 1057 (1666)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccC-Cchh------HHHH
Confidence 4455566666666666666666665533211 112223333333332 333444444444321 1111 2233
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001645 873 LVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEA 952 (1038)
Q Consensus 873 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A 952 (1038)
+..++-+++|..+|++. ..+....+.||.- -+.+++|.++-++.. .+..|..+..+-.+.|.+.+|
T Consensus 1058 ai~~~LyEEAF~ifkkf-----~~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKF-----DMNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HhhhhHHHHHHHHHHHh-----cccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence 44556667777777653 2233344444432 455566666555442 345667777777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHhccCChhhhh
Q 001645 953 WDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRTIFFGLNREDNLYQIT 1023 (1038)
Q Consensus 953 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~~~ 1023 (1038)
.+-|-+. .|+..|.-+++...+.|+|++-..++....++.-.|.. =..+|.+|.+.+++-|++
T Consensus 1124 ieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE 1186 (1666)
T KOG0985|consen 1124 IESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELE 1186 (1666)
T ss_pred HHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHH
Confidence 7766554 36677777777777777777777766555544444432 335666776666665544
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-07 Score=97.78 Aligned_cols=234 Identities=13% Similarity=0.054 Sum_probs=115.8
Q ss_pred CCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCCChhh
Q 001645 683 YSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYL--ITPDTWTIMMMQYGRAGLT-EMAMRVFEDMKANGCNPSGST 759 (1038)
Q Consensus 683 ~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~--~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~ 759 (1038)
++.+...-+-...+.-...|+++|..+|+++.+..+- -|..+|+.++-.--..... --|..++. -...+|. |
T Consensus 258 f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~---idKyR~E--T 332 (559)
T KOG1155|consen 258 FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN---IDKYRPE--T 332 (559)
T ss_pred CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH---hccCCcc--c
Confidence 3333333333334444566777777777777665321 1445555544322111111 01111111 0112222 2
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Q 001645 760 YKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALC 839 (1038)
Q Consensus 760 ~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 839 (1038)
... |..+...+ ++.+.|...|++.++.+..- ...|..+.+-|....+...|.+.++...+..|.+-.+|-.|..+|.
T Consensus 333 CCi-IaNYYSlr-~eHEKAv~YFkRALkLNp~~-~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 333 CCI-IANYYSLR-SEHEKAVMYFKRALKLNPKY-LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYE 409 (559)
T ss_pred eee-ehhHHHHH-HhHHHHHHHHHHHHhcCcch-hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHH
Confidence 222 22222211 25566666666666544222 2344444555666666666666666666655555555666666666
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHH
Q 001645 840 RAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALE 919 (1038)
Q Consensus 840 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~ 919 (1038)
-.+.+.=|+-.|++..+. -+-|...|.+|..+|.+.+++++|+..|......| ..+...|..|.+.|-+.++.++|.+
T Consensus 410 im~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHH
Confidence 666666666666665553 12345556666666666666666666665555443 2344555556666666666666655
Q ss_pred HHHHHHH
Q 001645 920 IFERMRQ 926 (1038)
Q Consensus 920 ~~~~m~~ 926 (1038)
.|++.++
T Consensus 488 ~yek~v~ 494 (559)
T KOG1155|consen 488 YYEKYVE 494 (559)
T ss_pred HHHHHHH
Confidence 5555543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-06 Score=96.47 Aligned_cols=171 Identities=12% Similarity=0.131 Sum_probs=110.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCH
Q 001645 341 VLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDL 420 (1038)
Q Consensus 341 ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 420 (1038)
.+.+......|.+|+.+++.+...... ..-|..+.+.|...|+++.|+++|-+.. .++-.|..|.+.|++
T Consensus 738 aieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccH
Confidence 344555667778888888777665433 3456677788888888888888875432 266678888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001645 421 SKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCM 500 (1038)
Q Consensus 421 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 500 (1038)
+.|.++-.+. .|.......|.+-..-+-+.|++.+|.++|-.+- .|+ .-|.+|-+.|..++.+++..+-
T Consensus 808 ~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 8888776543 3444555666666666777788888877764432 233 2356677777777777766543
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001645 501 EDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNM 535 (1038)
Q Consensus 501 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 535 (1038)
... .-..|...+..-|-..|+...|.+-|-+.
T Consensus 877 h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 877 HGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred Chh---hhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 221 12234455556666677777776665544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.5e-08 Score=102.27 Aligned_cols=319 Identities=14% Similarity=0.106 Sum_probs=202.0
Q ss_pred HHHhhccCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 001645 167 VLKRCFKVPHLALRFFNWVKLREGFCHATETYNTMLTIAG--EAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAK 244 (1038)
Q Consensus 167 vl~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~--~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g 244 (1038)
++.+..+.|.....+|..-+++. .-..+..++. -.|+|..|++++.+-.+.+ +.....|..-+.+--+.|
T Consensus 61 ~l~~v~~~~~~~~~w~~~rKrrr-------a~~~~~egl~~l~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrg 132 (400)
T COG3071 61 LLRRVLRTPAHTRGWFSRRKRRR-------ARKALNEGLLKLFEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRG 132 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcc
Confidence 33444444555555554332221 2233334433 3588999999888877766 555667777777778888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 001645 245 LIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIAD 324 (1038)
Q Consensus 245 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 324 (1038)
+.+.|-.++.+..+.--.++...+-+........|+++.|..-.+++.+.+.. +.........+|.+.|++..+..++.
T Consensus 133 d~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~ 211 (400)
T COG3071 133 DEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILP 211 (400)
T ss_pred cHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999988888887633556667777778888888888888888888776544 56778888888888888888888888
Q ss_pred HHHHcCCCCChh-------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001645 325 DMVRISQIPERD-------AYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMM 397 (1038)
Q Consensus 325 ~m~~~~~~p~~~-------~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 397 (1038)
.|.+.+.-.+.. +|..+++-....+..+.-...|++...+ .+-++..-.+++.-+..+|+.++|.++.++..
T Consensus 212 ~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L 290 (400)
T COG3071 212 KLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDAL 290 (400)
T ss_pred HHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 888877654432 3555555554444444444444444332 23345556666666777777777777777766
Q ss_pred HcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 001645 398 RRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAV 477 (1038)
Q Consensus 398 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~ 477 (1038)
++...+. -...-.+.+-++.+.-++..+.-.... +-++..+.+|-..|.+.+.+.+|...|+..++. .|+..+|
T Consensus 291 k~~~D~~---L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~ 364 (400)
T COG3071 291 KRQWDPR---LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDY 364 (400)
T ss_pred HhccChh---HHHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhH
Confidence 6655542 222233445555555555555444331 122355566666666666666666666655554 5666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 478 TAMVAGHVRQDNLSEAWKVFKCME 501 (1038)
Q Consensus 478 ~~li~~~~~~g~~~~A~~~~~~m~ 501 (1038)
+.+.++|.+.|+..+|.+++++..
T Consensus 365 ~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 365 AELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHH
Confidence 666666666666666666666544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-06 Score=96.44 Aligned_cols=461 Identities=12% Similarity=0.130 Sum_probs=293.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhcc
Q 001645 338 YGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRK 417 (1038)
Q Consensus 338 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 417 (1038)
|..+++.| ..+++...+++.+.+.++..+ -..+.....-.++..|+-++|......-.+.++.+..+|..+.-.+...
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKKFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHhCCc-cchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 34444443 457788888888888774332 3445555555577889999999999999888888999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001645 418 NDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVF 497 (1038)
Q Consensus 418 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 497 (1038)
.++++|++.|......+ +-|...+.-+--.-++.++++.........++.. +.....|..+.-++.-.|+...|..++
T Consensus 89 K~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888764 3355666666555567788888888877777752 223456777777888888889998888
Q ss_pred HHHHhCC-CCCCHHHHHHHHHH------HHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHh
Q 001645 498 KCMEDKG-IRPTRKSYSVFIKE------LCRVSRTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQ 570 (1038)
Q Consensus 498 ~~m~~~g-~~p~~~~~~~li~~------~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~~ 570 (1038)
++..... -.|+...|...... ....|..++|++.+..-...- .|.
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--~Dk-------------------------- 218 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--VDK-------------------------- 218 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH--HHH--------------------------
Confidence 8877553 24566555443322 334555555555444332110 000
Q ss_pred hhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHHHhhccCC
Q 001645 571 GICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQ 650 (1038)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 650 (1038)
T Consensus 219 -------------------------------------------------------------------------------- 218 (700)
T KOG1156|consen 219 -------------------------------------------------------------------------------- 218 (700)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001645 651 YTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMM 730 (1038)
Q Consensus 651 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~ 730 (1038)
...-..-...+.+.+++++|..++..+..+++. +...|-.+..
T Consensus 219 ------------------------------------la~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd-n~~Yy~~l~~ 261 (700)
T KOG1156|consen 219 ------------------------------------LAFEETKADLLMKLGQLEEAVKVYRRLLERNPD-NLDYYEGLEK 261 (700)
T ss_pred ------------------------------------HHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch-hHHHHHHHHH
Confidence 000111223355677889999999999888643 4445555555
Q ss_pred HHHHcCChHHHH-HHHHHHHHcCC---CCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001645 731 QYGRAGLTEMAM-RVFEDMKANGC---NPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCE 806 (1038)
Q Consensus 731 ~~~~~g~~~~A~-~~~~~m~~~g~---~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~ 806 (1038)
++.+..+.-+++ .+|...-+.-. .|-....+.+.. ..-.+..-.++..+.+.|+.+ ++..+...|-.
T Consensus 262 ~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~------eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~ 332 (700)
T KOG1156|consen 262 ALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNG------EELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKD 332 (700)
T ss_pred HHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCc------chhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhc
Confidence 665444444455 66666554311 122222221111 112233444566677777654 33344444433
Q ss_pred cCCHHHHHHHHHHHHH----cC-----------CCCcch--HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHH-HHHH
Q 001645 807 VGMLQLAKSCMDVLRK----VG-----------FTVPLS--YSLYIRALCRAGELEEALALLDEVKEERSKLDEF-VFGS 868 (1038)
Q Consensus 807 ~g~~~~A~~~~~~~~~----~~-----------~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ 868 (1038)
-...+-..++...+.. .+ ++.+.. +..++..|-+.|+++.|+..++..... .|+.+ -|..
T Consensus 333 p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~ 410 (700)
T KOG1156|consen 333 PEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLV 410 (700)
T ss_pred hhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHH
Confidence 2222222222222211 11 112233 355677888999999999999998874 67655 4556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--------HHHH-
Q 001645 869 LIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVT--------YTAL- 939 (1038)
Q Consensus 869 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~--------~~~l- 939 (1038)
-.+.+...|++++|..++++..+.. .||...-.--..-..++++.++|.++.......|. +... |..+
T Consensus 411 KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E 487 (700)
T KOG1156|consen 411 KARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLE 487 (700)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHh
Confidence 6688999999999999999999876 57776665667777889999999999999988764 3322 3222
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHH
Q 001645 940 -IQGFANLGKVAEAWDVFYRMKI 961 (1038)
Q Consensus 940 -i~~~~~~g~~~~A~~~~~~m~~ 961 (1038)
..+|.++|++.+|++-|..+-.
T Consensus 488 ~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 488 DGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHH
Confidence 4567788889888887776543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3e-07 Score=99.28 Aligned_cols=281 Identities=12% Similarity=0.042 Sum_probs=190.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001645 721 TPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETY 800 (1038)
Q Consensus 721 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~l 800 (1038)
++.....-..-+-..+++++..++++...+.. ++....+..-|..+.. .|+..+-..+=..+.+.-+ ....+|-++
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~e--l~~~n~Lf~lsh~LV~~yP-~~a~sW~aV 318 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYE--LGKSNKLFLLSHKLVDLYP-SKALSWFAV 318 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHH--hcccchHHHHHHHHHHhCC-CCCcchhhH
Confidence 33444444445555666666777666666542 2233333333333332 2233333334444444322 223445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHc--CC-CCCHHHHHHHHHHHHhcC
Q 001645 801 LDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEE--RS-KLDEFVFGSLIHGLVQRG 877 (1038)
Q Consensus 801 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-~p~~~t~~~li~~~~~~g 877 (1038)
.--|...|+..+|++.|.+....++.-...|-.+...|+-.|..+.|+..+....+. |. .|.. | +.--|.+.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L--Y--lgmey~~t~ 394 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL--Y--LGMEYMRTN 394 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH--H--HHHHHHHhc
Confidence 555666677888888887777776666678888888888888888888888777663 22 1221 2 334567778
Q ss_pred CHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcCCHHH
Q 001645 878 QIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQE------GCEPTVVTYTALIQGFANLGKVAE 951 (1038)
Q Consensus 878 ~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~------g~~pd~~~~~~li~~~~~~g~~~~ 951 (1038)
+.+-|.++|.+..... +.|+..++-+.-.....+.+.+|..+|+..++. .......+++.|..+|.+.+++++
T Consensus 395 n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 8888888888877642 567777887777777788888888888887631 111256678888999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhcHHHHHHHH
Q 001645 952 AWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRTIFFGL 1013 (1038)
Q Consensus 952 A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~ 1013 (1038)
|+..+++.....++ |..+|.+++-+|...|+++.|.+.|.+.+ .+.|+..+...++.-.
T Consensus 474 AI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 474 AIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 99999999888887 88899999999999999999999998887 4788887777777644
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-06 Score=97.07 Aligned_cols=590 Identities=13% Similarity=0.103 Sum_probs=303.5
Q ss_pred CHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC-C--------Cc
Q 001645 229 NIKTWTILVS--LYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQK-E--------MV 297 (1038)
Q Consensus 229 ~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-~--------~~ 297 (1038)
|..|-.++++ .|.--|+.+.|.+-.+.++ +-..|..|.+.|.+..+++-|.-.+..|... | -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4455555544 3455677777776666655 3346777777777777777666665555432 1 01
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001645 298 LDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLV 377 (1038)
Q Consensus 298 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 377 (1038)
|+ .+-.-+.-.....|.+++|+.+|.+-.+ |-.|=+.|-..|.+++|+++-+.=-.-.+ ..||..-.
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHH
Confidence 11 1111111222355677777777776655 33344455556777777776553222222 23555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 001645 378 KGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKK 457 (1038)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 457 (1038)
.-+-..++.+.|++.|++...+... ++ .|+. .++.....+.+++ .|...|.-...-+-..|+.+.
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafe---v~-rmL~-----e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFE---VF-RMLK-----EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHH---HH-HHHH-----hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHH
Confidence 5556667777777776653221110 00 0111 0111111112222 233445555555556788888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001645 458 GCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQA 537 (1038)
Q Consensus 458 a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (1038)
|+.+|..... |-.+++..|-.|+.++|-++-++- | |..+...|.+.|-..|++.+|..+|-+.+
T Consensus 931 Al~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq- 994 (1416)
T KOG3617|consen 931 ALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQ- 994 (1416)
T ss_pred HHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH-
Confidence 8888876543 567788888889999998887652 2 66777778899999999999999998764
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCCCccccccccccccccccccCCCCC
Q 001645 538 SKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPK 617 (1038)
Q Consensus 538 ~~~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1038)
+|...|+.|...+-.+....+-.+
T Consensus 995 --------afsnAIRlcKEnd~~d~L~nlal~------------------------------------------------ 1018 (1416)
T KOG3617|consen 995 --------AFSNAIRLCKENDMKDRLANLALM------------------------------------------------ 1018 (1416)
T ss_pred --------HHHHHHHHHHhcCHHHHHHHHHhh------------------------------------------------
Confidence 577778777666555443322111
Q ss_pred CCChhhHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 001645 618 PYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTA 697 (1038)
Q Consensus 618 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 697 (1038)
++..+.-.....++.+|.+++... .+++..++.+. .+...
T Consensus 1019 --------------s~~~d~v~aArYyEe~g~~~~~AV--mLYHkAGm~~k------------------------ALelA 1058 (1416)
T KOG3617|consen 1019 --------------SGGSDLVSAARYYEELGGYAHKAV--MLYHKAGMIGK------------------------ALELA 1058 (1416)
T ss_pred --------------cCchhHHHHHHHHHHcchhhhHHH--HHHHhhcchHH------------------------HHHHH
Confidence 011111112222333333332211 11122222111 11122
Q ss_pred hcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHH
Q 001645 698 GRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDH 777 (1038)
Q Consensus 698 ~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~ 777 (1038)
.+..++. |.++..+ +.....|+...+.-..-++...++++|..++...++. .-.+..|. +.++.-
T Consensus 1059 F~tqQf~-aL~lIa~--DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~---------~~AlqlC~---~~nv~v 1123 (1416)
T KOG3617|consen 1059 FRTQQFS-ALDLIAK--DLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF---------SGALQLCK---NRNVRV 1123 (1416)
T ss_pred HhhcccH-HHHHHHH--hcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHHHHHh---cCCCch
Confidence 2222222 2222211 1223347788888888888899999999988776652 22333332 224444
Q ss_pred HHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHH-----
Q 001645 778 AIKIFQEMVNAG-HIPD----KELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEA----- 847 (1038)
Q Consensus 778 A~~~~~~m~~~~-~~~d----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A----- 847 (1038)
..++-+.|.-.. -.|+ ..+...+.++|.+.|.+..|.+-|.+.-.. -.-++++.+.|+.++.
T Consensus 1124 tee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK--------l~AMraLLKSGdt~KI~FFAn 1195 (1416)
T KOG3617|consen 1124 TEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK--------LSAMRALLKSGDTQKIRFFAN 1195 (1416)
T ss_pred hHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH--------HHHHHHHHhcCCcceEEEEee
Confidence 444444443221 2232 245677889999999999988777654322 1235556666665442
Q ss_pred -----------HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHH
Q 001645 848 -----------LALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGR 916 (1038)
Q Consensus 848 -----------~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~ 916 (1038)
..+++ ...-..++.+...++.-|.+..-++.--.+|...-+. ...-|..+-. ..|-+++
T Consensus 1196 ~sRqkEiYImAANyLQ---tlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqi----Eiee~q~ydK---a~gAl~e 1265 (1416)
T KOG3617|consen 1196 TSRQKEIYIMAANYLQ---TLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQI----EIEELQTYDK---AMGALEE 1265 (1416)
T ss_pred ccccceeeeehhhhhh---hcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHh----hHHHHhhhhH---HhHHHHH
Confidence 11111 1112334444444444444433333322222222110 0000111101 1233445
Q ss_pred HHHHHHHHHHcCC--------CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCC
Q 001645 917 ALEIFERMRQEGC--------EPTVVTYTALIQGFANL-GKVAEAWDVFYRMKIKGPFP----DFRTYSMFIGCLCKVGK 983 (1038)
Q Consensus 917 A~~~~~~m~~~g~--------~pd~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~----~~~~~~~l~~~~~~~g~ 983 (1038)
|-..+.++.+++. +-+..-+...+...... .+..+.++-...|.+....| -...|..|+..|....+
T Consensus 1266 A~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~ 1345 (1416)
T KOG3617|consen 1266 AAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKN 1345 (1416)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhh
Confidence 5555555543320 01122222222222211 13445555555666553333 34678889999999999
Q ss_pred hHHHHHHHHHHHHC
Q 001645 984 SEEALELLSEMTES 997 (1038)
Q Consensus 984 ~~~A~~l~~~m~~~ 997 (1038)
|..|.+.+.+|..+
T Consensus 1346 y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1346 YKPAYRALTELQKK 1359 (1416)
T ss_pred ccHHHHHHHHHhhc
Confidence 99999999999864
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-05 Score=89.89 Aligned_cols=127 Identities=18% Similarity=0.130 Sum_probs=94.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 001645 866 FGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPT-VVTYTALIQGFA 944 (1038)
Q Consensus 866 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~ 944 (1038)
|......+.+.+..++|...+.+..+.. +-....|......+...|+.++|.+.|...... .|+ .....++...+.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHH
Confidence 4455566777777788877777766542 445556666667777788888888888887763 564 456777888888
Q ss_pred hcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 945 NLGKVAEAWD--VFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 945 ~~g~~~~A~~--~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
+.|+..-|.+ ++..+.+.++. +...|..+...+.+.|+.++|.+-|....+
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 8887776666 88888888877 888888888888888888888888877664
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-09 Score=117.97 Aligned_cols=198 Identities=11% Similarity=0.085 Sum_probs=92.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHh
Q 001645 336 DAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYL 415 (1038)
Q Consensus 336 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 415 (1038)
.+|.++..+|.-+++.+.|++.|++....+.. ...+|+.+..-+....++|+|...|+.....++..-.+|..+...|.
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL 500 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence 34555555555555555555555544443222 34444444455555555555555555555444444444445555555
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001645 416 RKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWK 495 (1038)
Q Consensus 416 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 495 (1038)
+.++++.|.-.|++..+-+ +-+.+....+...+.+.|+.++|+++++++...... |...--..+..+...+++++|+.
T Consensus 501 Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~ 578 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQ 578 (638)
T ss_pred ccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHH
Confidence 5555555555555444432 112333334444444555555555555555444322 22222233344444555555555
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001645 496 VFKCMEDKGIRPT-RKSYSVFIKELCRVSRTNEILKVLNNMQAS 538 (1038)
Q Consensus 496 ~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (1038)
.|+++.+. .|+ ...|..+.+.|.+.|+.+.|+.-|--+.+.
T Consensus 579 ~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 579 ELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 55555443 222 233444444555555555555555444443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.2e-07 Score=96.43 Aligned_cols=292 Identities=13% Similarity=0.100 Sum_probs=201.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCc--CCHHHHHHHHHHHHhcC
Q 001645 237 VSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMV--LDLSLYKIVMNCAAKLG 314 (1038)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g 314 (1038)
..+|-...+.++++.-.+.....|+.-+...-+....+.-...+++.|+.+|+++.+.+.- -|..+|+.++-.--...
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 3455555677777777777777776655554444445556667888888888888776431 35667776654432211
Q ss_pred Chh-HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001645 315 DVD-AVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIV 393 (1038)
Q Consensus 315 ~~~-~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 393 (1038)
.+. -|..++. . -+--..|..++.+-|.-.++-++|...|++..+.++. ....|+.+.+-|....+...|.+.+
T Consensus 314 kLs~LA~~v~~-i----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 314 KLSYLAQNVSN-I----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHHHHHHHHHH-h----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHH
Confidence 111 1111111 1 1122335666667777778888888888888877665 5667888888888888888888888
Q ss_pred HHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 001645 394 DIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPD 473 (1038)
Q Consensus 394 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~ 473 (1038)
++..+-++.|-..|-.|..+|.-.+...-|+-.|++..... +-|...|.+|..+|.+.++.++|...|......| ..+
T Consensus 388 RrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 388 RRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 88888888888888888888888888888888888877642 3367788888888888888888888888888776 235
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 474 SVAVTAMVAGHVRQDNLSEAWKVFKCMED----KGIRPT--RKSYSVFIKELCRVSRTNEILKVLNNMQ 536 (1038)
Q Consensus 474 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (1038)
...+..|.+.|-+.++.++|...|++..+ .|...+ ..+..-|..-+.+.+++++|........
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 67888888888888888888888876654 232222 1222234455667778887776555543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4e-07 Score=98.37 Aligned_cols=214 Identities=14% Similarity=0.091 Sum_probs=139.3
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 001645 688 ATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISL 767 (1038)
Q Consensus 688 ~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 767 (1038)
.+|-++.--|...++..+|++.|......... =...|-...+.|+-.|..+.|+..|...-+. -|.
T Consensus 313 ~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G----------- 378 (611)
T KOG1173|consen 313 LSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPG----------- 378 (611)
T ss_pred cchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccC-----------
Confidence 34444444444456666666666655443322 2235555666666666666666555444332 000
Q ss_pred HhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHH
Q 001645 768 SGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEA 847 (1038)
Q Consensus 768 ~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 847 (1038)
-..|- .| +.--|.+.+++..|.+.|.+.....|.+|...+-+.-..-..+.+.+|
T Consensus 379 ---------------------~hlP~--LY--lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A 433 (611)
T KOG1173|consen 379 ---------------------CHLPS--LY--LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEA 433 (611)
T ss_pred ---------------------CcchH--HH--HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHH
Confidence 01121 11 122355566777777777777777777777777777777778888888
Q ss_pred HHHHHHHHHc----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHH
Q 001645 848 LALLDEVKEE----R--SKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIF 921 (1038)
Q Consensus 848 ~~~~~~m~~~----g--~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~ 921 (1038)
..+|+...+. + ...-..+++.|.++|.+.+..++|+..+++..... +-+..+|.++.-.|...|+++.|.+.|
T Consensus 434 ~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 434 LKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 8888877631 1 11234568888899999999999999999888753 678888889988999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHH
Q 001645 922 ERMRQEGCEPTVVTYTALIQGF 943 (1038)
Q Consensus 922 ~~m~~~g~~pd~~~~~~li~~~ 943 (1038)
.+.+. +.||..+...++..+
T Consensus 513 hKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 513 HKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHh--cCCccHHHHHHHHHH
Confidence 98875 578877776666533
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.8e-09 Score=109.02 Aligned_cols=200 Identities=15% Similarity=0.073 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001645 794 KELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGL 873 (1038)
Q Consensus 794 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 873 (1038)
...+..+...+...|++++|...++...+..+.....+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45667778889999999999999999988887777888889999999999999999999998863 34566788888899
Q ss_pred HhcCCHHHHHHHHHHHHHcCC-CccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001645 874 VQRGQIEEALAKVETMKQAGI-YPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEA 952 (1038)
Q Consensus 874 ~~~g~~~~A~~~~~~m~~~g~-~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A 952 (1038)
...|++++|...+++..+... ......+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999886422 2344567778889999999999999999998753 33566788889999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 953 WDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 953 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
.+.+++..+..+ .+...+..++..+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYN-QTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999988743 3777888889999999999999999888764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-07 Score=100.26 Aligned_cols=85 Identities=13% Similarity=0.110 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCH-HHHHHHHH
Q 001645 231 KTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPD-AVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDL-SLYKIVMN 308 (1038)
Q Consensus 231 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~ 308 (1038)
..+...-+-|.++|++++|++.|....+. .|| ++.|...-.+|...|+|+.+.+--....+. .|+- -.+.--.+
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRAS 191 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHH
Confidence 34445555666666777777777666655 555 566666666666666666666655555442 3331 13333334
Q ss_pred HHHhcCChhHH
Q 001645 309 CAAKLGDVDAV 319 (1038)
Q Consensus 309 ~~~~~g~~~~a 319 (1038)
++-..|+++++
T Consensus 192 A~E~lg~~~ea 202 (606)
T KOG0547|consen 192 AHEQLGKFDEA 202 (606)
T ss_pred HHHhhccHHHH
Confidence 44444554444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5e-06 Score=93.40 Aligned_cols=333 Identities=14% Similarity=0.104 Sum_probs=224.4
Q ss_pred CCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 001645 684 SHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYL 763 (1038)
Q Consensus 684 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 763 (1038)
.-+..+|..+.-+..+.|+++.+-+.|++....-+. .-..|+.+...|...|.-..|..+++.-....-.|+..+-..+
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 346678888888889999999999999888764443 6678999999999999999999999887665444777777777
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHC--CCC--CCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCc
Q 001645 764 IISLSGRKGRKVDHAIKIFQEMVNA--GHI--PDKELVETYLDCLCEV-----------GMLQLAKSCMDVLRKVGFTVP 828 (1038)
Q Consensus 764 l~~~~~~~~~~~~~A~~~~~~m~~~--~~~--~d~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~ 828 (1038)
....|...-+.+++++++-...+.. +.. .....+-.+.-+|... -...++.+.++...+.++.++
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 7777766667888888888777762 111 1123333333333322 123356666777777777777
Q ss_pred chHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCC-------------
Q 001645 829 LSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQ-AGI------------- 894 (1038)
Q Consensus 829 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-~g~------------- 894 (1038)
.+...+.--|+..++++.|++...+..+.+..-+...|..+.-.+.-.+++.+|+.+.+.... .|.
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 665566666777778888888888877776666777777777777777777777666554432 111
Q ss_pred --------------------------------------------------------------------------------
Q 001645 895 -------------------------------------------------------------------------------- 894 (1038)
Q Consensus 895 -------------------------------------------------------------------------------- 894 (1038)
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence
Q ss_pred Cc--c------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001645 895 YP--T------VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFP 966 (1038)
Q Consensus 895 ~p--~------~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 966 (1038)
.| + ...|....+.+.+.++.++|.-.+.+.... +.-.+..|......+...|..++|.+.|......+|.
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~- 716 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD- 716 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-
Confidence 00 0 011223333444444444444444444332 1223445555556666778888888888888887777
Q ss_pred CHHHHHHHHHHHHhcCChHHHHH--HHHHHHHCCCCC-ChhcHHHHHHHHhccCChhh
Q 001645 967 DFRTYSMFIGCLCKVGKSEEALE--LLSEMTESGIVP-SNINFRTIFFGLNREDNLYQ 1021 (1038)
Q Consensus 967 ~~~~~~~l~~~~~~~g~~~~A~~--l~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 1021 (1038)
++.+..++..+|.+.|+..-|.. ++.++++ +.| +...|-.+-..+...|+.++
T Consensus 717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 717 HVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHH
Confidence 77888889999999888777777 8888886 345 56788888888888898887
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-08 Score=120.48 Aligned_cols=148 Identities=11% Similarity=-0.016 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHH
Q 001645 775 VDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEV 854 (1038)
Q Consensus 775 ~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 854 (1038)
+++|...+++.++.+. -+...+..+..++...|++++|...++...+.+|.++..|..+...+...|++++|+..+++.
T Consensus 320 ~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 320 MIKAKEHAIKATELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455555555544431 123344444444455555555555555555555544444555555555555555555555555
Q ss_pred HHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 855 KEERSKLDE-FVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMR 925 (1038)
Q Consensus 855 ~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 925 (1038)
.+. .|+. ..+..++..+...|++++|...++++.+..-+-+...+..+..+|...|+.++|...++++.
T Consensus 399 l~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 399 LKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred Hhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 443 2221 11222222333445555555555544432211122234444444445555555555554443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.7e-05 Score=85.96 Aligned_cols=623 Identities=13% Similarity=0.097 Sum_probs=329.0
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 001645 207 EAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALE 286 (1038)
Q Consensus 207 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 286 (1038)
..+++....++.+.+.+ +.+....+.....-.+...|+-++|.+....-.... ..+.+.|+.+.-.+-...++++|.+
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 45667777777777766 334455555555555667788888888777766543 4456778888777777888889999
Q ss_pred HHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001645 287 FYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPE-RDAYGCVLKSFCVSMRIREALEFIRNLKSKE 365 (1038)
Q Consensus 287 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 365 (1038)
.|......+. -|...+.-+.-.-++.|+++..........+. .|. ...|.....++.-.|+...|.+++++..+..
T Consensus 97 cy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 97 CYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888877543 36667777766667778888877777776663 233 3447777888888899999999998887764
Q ss_pred -CCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 001645 366 -ISMDRDHFETLV------KGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPM 438 (1038)
Q Consensus 366 -~~p~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 438 (1038)
-.|+...|.... ....+.|.+++|.+.+......-......-.+-...+.+.+++++|..++..+... .||
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPd 251 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPD 251 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cch
Confidence 345555554332 23356677777777766554433322233445566777788888888888887765 366
Q ss_pred HHHHHHHHHHHH-hcCChhHHH-HHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 001645 439 ASTYTELMQHLF-KLNEYKKGC-ELYNEMLKRG---IQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYS 513 (1038)
Q Consensus 439 ~~t~~~ll~~~~-~~~~~~~a~-~l~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 513 (1038)
..-|...+..+. +..+.-++. .+|....+.- ..|-....+.+ .-..-.+..-.++..+.++|+++-.....
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl----~~eel~~~vdkyL~~~l~Kg~p~vf~dl~ 327 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVL----NGEELKEIVDKYLRPLLSKGVPSVFKDLR 327 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHh----CcchhHHHHHHHHHHHhhcCCCchhhhhH
Confidence 655555444433 233322222 5555444331 11111111111 01111233344555555666543222222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHhhhhcCCCCCCccccccccCCCCC
Q 001645 514 VFIKELCRVSRTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEASGNDASRGQGP 593 (1038)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 593 (1038)
.| |-.-...+ +++++... +. +.+.++++.
T Consensus 328 SL---yk~p~k~~----~le~Lvt~---------------y~--------------------~~L~~~~~f--------- 356 (700)
T KOG1156|consen 328 SL---YKDPEKVA----FLEKLVTS---------------YQ--------------------HSLSGTGMF--------- 356 (700)
T ss_pred HH---HhchhHhH----HHHHHHHH---------------HH--------------------hhcccccCC---------
Confidence 21 11111110 22222110 00 000000000
Q ss_pred CccccccccccccccccccCCCCCCCChhhHHHHHHHhcCCCccchHHHHHhhccCCCCHHHHHHHHHccccchhhHHHH
Q 001645 594 NVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHF 673 (1038)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 673 (1038)
+..|
T Consensus 357 --------------------------~~~D-------------------------------------------------- 360 (700)
T KOG1156|consen 357 --------------------------NFLD-------------------------------------------------- 360 (700)
T ss_pred --------------------------Cccc--------------------------------------------------
Confidence 0000
Q ss_pred HHhhccCCCCCCCH--HHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 001645 674 FSWVGKQADYSHSS--ATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKAN 751 (1038)
Q Consensus 674 ~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 751 (1038)
....-+|.+ .++-.+++.+-+.|+++.|..+++.....-+. -+.-|-.-.+.+...|++++|...+++..+.
T Consensus 361 -----~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 361 -----DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred -----ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 000012222 34455677788899999999999988865322 2345555567888899999999999998876
Q ss_pred CCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHH
Q 001645 752 GCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETY------------LDCLCEVGMLQLAKSCMDV 819 (1038)
Q Consensus 752 g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~l------------i~~~~~~g~~~~A~~~~~~ 819 (1038)
+ .||...-.-...... ..+.+++|.++.....+.|. +. .+.| ..+|.+.|++..|.+-|..
T Consensus 435 D-~aDR~INsKcAKYmL--rAn~i~eA~~~~skFTr~~~--~~--~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~ 507 (700)
T KOG1156|consen 435 D-TADRAINSKCAKYML--RANEIEEAEEVLSKFTREGF--GA--VNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHE 507 (700)
T ss_pred c-chhHHHHHHHHHHHH--HccccHHHHHHHHHhhhccc--ch--hhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhh
Confidence 4 244433222222222 34588899988888887774 11 1111 2334444444444444433
Q ss_pred HHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC
Q 001645 820 LRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAG----IY 895 (1038)
Q Consensus 820 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~ 895 (1038)
+.+.-..-..----.-..|.+.|-+..=+++++.--.. .-+..-+.+ ...|++++-.|.+.. ..
T Consensus 508 i~k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll~~~d~L--~~~p~y~~A----------a~~Ai~iYl~l~d~p~~~~~~ 575 (700)
T KOG1156|consen 508 IEKHYKTWSEDQFDFHTYCMRKGTLRSYVELLEWEDNL--RSSPYYLRA----------AKGAIEIYLRLHDSPNMYTNK 575 (700)
T ss_pred HHHHHHHHhhhhhhHHHHHHhcCcHHHHHHHHHHHHhh--ccChHHHHH----------HHHHHHHHHHHhcCccccccc
Confidence 32211000000000011122222222222222111110 011111111 123455555554321 00
Q ss_pred ccHhhHHH--HHHHHHhc-CCHHHHHHHHHHHHH---------cCCC--CCHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 001645 896 PTVHVYTS--FVVHFFRE-KQVGRALEIFERMRQ---------EGCE--PTVVTYTALIQGFANLGK-VAEAWDVFYRMK 960 (1038)
Q Consensus 896 p~~~~y~~--li~~~~~~-g~~~~A~~~~~~m~~---------~g~~--pd~~~~~~li~~~~~~g~-~~~A~~~~~~m~ 960 (1038)
.+...-.+ +-....+. .+..+|...-+.+.+ .|.+ ||.. -+...+.+..+ .++|.+++....
T Consensus 576 ~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~~s~~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l~ 652 (700)
T KOG1156|consen 576 ADEIEKMSDEEKKIKKKQRKAKKKAKKEAKKKKDKKKKEAKSQSGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNLQ 652 (700)
T ss_pred chhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHHH
Confidence 00000011 11111111 112223322222221 1322 3433 33444555544 678999999888
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 961 IKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 961 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
..+.. +..+|..-...|.+.|++.-|.+.+++...
T Consensus 653 ~~~~~-~~~~~iL~~ely~rk~k~~l~~~~~~~~~~ 687 (700)
T KOG1156|consen 653 HKGKE-KGETYILSFELYYRKGKFLLALACLNNAEG 687 (700)
T ss_pred Hhccc-chhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 88777 889999999999999999999999888763
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-10 Score=86.98 Aligned_cols=49 Identities=31% Similarity=0.510 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHH
Q 001645 861 LDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFF 909 (1038)
Q Consensus 861 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~ 909 (1038)
||.++||++|++|++.|++++|.++|++|.+.|++||..||+++|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-10 Score=86.75 Aligned_cols=50 Identities=28% Similarity=0.649 Sum_probs=43.3
Q ss_pred ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 001645 896 PTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFAN 945 (1038)
Q Consensus 896 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~ 945 (1038)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||++|+++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888888888888888888888888888888888888888888888864
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.2e-08 Score=114.09 Aligned_cols=266 Identities=10% Similarity=-0.016 Sum_probs=173.7
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---------cCCChhHHHHHHHHHH
Q 001645 227 AKNIKTWTILVSLYGK-----AKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLC---------NAGKGDIALEFYKEMA 292 (1038)
Q Consensus 227 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~---------~~g~~~~A~~~~~~m~ 292 (1038)
+.+...|...+.+-.. .+..++|+..|++..+.. +-+...|..+..++. ..+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4556666666555322 234678888888888663 223445555544433 2344778888888888
Q ss_pred hCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 001645 293 QKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPE-RDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRD 371 (1038)
Q Consensus 293 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 371 (1038)
+.+.. +...+..+...+...|++++|...|++..+.. |+ ...|..+...+...|++++|...+++..+..+. +..
T Consensus 332 ~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~ 407 (553)
T PRK12370 332 ELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA 407 (553)
T ss_pred hcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence 76543 66777788888888888888888888888754 44 345777778888889999999988888877655 223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 001645 372 HFETLVKGLCIAGRISDALEIVDIMMRRNLV-DGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMAS-TYTELMQHL 449 (1038)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~ 449 (1038)
.+..++..+...|++++|...+++......+ +...+..+...|...|++++|...+.++... .|+.. ..+.+...+
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence 3333444566678888898888888766533 4556777888888889999999888886554 33433 334444455
Q ss_pred HhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001645 450 FKLNEYKKGCELYNEMLKRG-IQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKG 504 (1038)
Q Consensus 450 ~~~~~~~~a~~l~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 504 (1038)
...| +.+...++.+.+.. ..+....+ +-..|.-.|+.+.+... +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 5555 47777777666531 12222222 33445556777666666 7777653
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.5e-06 Score=82.76 Aligned_cols=274 Identities=11% Similarity=0.048 Sum_probs=137.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 001645 205 AGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIA 284 (1038)
Q Consensus 205 l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 284 (1038)
+...+++..|..+++.-...+-.-...+---+..+|...|++++|+..+..+.... .|+...+-.|.-.+.-.|.+.+|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 34456677777776655432211111222223445567777777777777766543 44555554444444445666666
Q ss_pred HHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001645 285 LEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSK 364 (1038)
Q Consensus 285 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 364 (1038)
..+-....+ ++-.-..|....-+.|+-++...+...+.+. ..--.++.......-.+.+|+++|.+....
T Consensus 111 ~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 111 KSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 665433321 2223334444444556655554444433221 011122333333344567788888777654
Q ss_pred CCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 001645 365 EISMDRDHFET-LVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYT 443 (1038)
Q Consensus 365 ~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 443 (1038)
+. +....|. +.-+|.+..-++-+.++++-..+.-+.+..+-|.......+.-+-..|.+-..++.+.+-.. |-
T Consensus 181 n~--ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~ 254 (557)
T KOG3785|consen 181 NP--EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YP 254 (557)
T ss_pred Ch--hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----ch
Confidence 32 2333332 33446677777777777777777766666666666665555444444444444444433211 10
Q ss_pred HHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001645 444 ELMQHLFKL-----NEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCM 500 (1038)
Q Consensus 444 ~ll~~~~~~-----~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 500 (1038)
.+.-+++. +.-+.|.+++--+.+. .|.. -..|+-.|.+.+++.+|..+.+++
T Consensus 255 -f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl 311 (557)
T KOG3785|consen 255 -FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDL 311 (557)
T ss_pred -hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhc
Confidence 11111221 2345555555555443 2222 223444566666666666665544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.6e-06 Score=84.65 Aligned_cols=203 Identities=11% Similarity=0.082 Sum_probs=122.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcC---CChHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 001645 726 TIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKG---RKVDHAIKIFQEMVNAGHIPDK-ELVETYL 801 (1038)
Q Consensus 726 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~~~A~~~~~~m~~~~~~~d~-~~~~~li 801 (1038)
-.++-.|.+.+++.+|..+.+++.- ..|-......++.+..+... ..+.-|...|+-.-+++..-|. .--.++.
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmA 366 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMA 366 (557)
T ss_pred hhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence 3455567777888888777766531 12222222222222221111 1344566666555455444332 1223455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHH
Q 001645 802 DCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFG-SLIHGLVQRGQIE 880 (1038)
Q Consensus 802 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~li~~~~~~g~~~ 880 (1038)
.++.-..++++....++.+..-...+..---.+..+++..|.+.+|.++|-++....++ |..+|. .+.++|.++++++
T Consensus 367 s~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCch
Confidence 55566667777777777777666555444456788888999999999999777654333 455554 4557778889999
Q ss_pred HHHHHHHHHHHcCCCccHhhHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 001645 881 EALAKVETMKQAGIYPTVHVYT-SFVVHFFREKQVGRALEIFERMRQEGCEPTVVTY 936 (1038)
Q Consensus 881 ~A~~~~~~m~~~g~~p~~~~y~-~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~ 936 (1038)
-|+.++-.+. -+.+..+.- .+.+-|.+.+.+=-|-+.|+.+... .|++..|
T Consensus 446 lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 446 LAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 8877765543 234444444 3446777888887788888777653 6777666
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-05 Score=86.40 Aligned_cols=148 Identities=14% Similarity=0.152 Sum_probs=100.9
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHcCCCccHhhHHHHHHHHHhcCCH
Q 001645 843 ELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVE--------TMKQAGIYPTVHVYTSFVVHFFREKQV 914 (1038)
Q Consensus 843 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~--------~m~~~g~~p~~~~y~~li~~~~~~g~~ 914 (1038)
.+.+|.+++....+....-.....-.++......|+++.|+.++. .+.+.+..|-.+ .+++..|.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCC
Confidence 567778888777665333334555666677778899999998888 566655556554 4566667777777
Q ss_pred HHHHHHHHHHHHc--CCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 001645 915 GRALEIFERMRQE--GCEPTVVTYTA----LIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEAL 988 (1038)
Q Consensus 915 ~~A~~~~~~m~~~--g~~pd~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 988 (1038)
+.|..++.+.... .-.+....... +...-.+.|+-++|..+++++.+.++. |..+...++.+|++. +.+.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~-d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPN-DTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHhc-CHHHHH
Confidence 7777777766532 11222233333 333344779999999999999998776 888999999999876 467787
Q ss_pred HHHHHH
Q 001645 989 ELLSEM 994 (1038)
Q Consensus 989 ~l~~~m 994 (1038)
.+-+.+
T Consensus 512 ~l~k~L 517 (652)
T KOG2376|consen 512 SLSKKL 517 (652)
T ss_pred HHhhcC
Confidence 776554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.8e-05 Score=88.51 Aligned_cols=247 Identities=13% Similarity=0.022 Sum_probs=130.3
Q ss_pred CCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCChhhH
Q 001645 685 HSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKAN----GCNPSGSTY 760 (1038)
Q Consensus 685 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~ 760 (1038)
.+..+|..+...+.+..+++.|...|...+.-.+. +...|-.....-...|+.-++..+|..-.+. |--|+-.-|
T Consensus 848 ~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw 926 (1238)
T KOG1127|consen 848 TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYW 926 (1238)
T ss_pred cchhheeccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHH
Confidence 34456666777778889999999999988876554 7777877777777788888888888873322 222222221
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHC---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCc
Q 001645 761 KYLIISLSGRKGRKVDHAIKIFQEMVNA---------GHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRK---VGFTVP 828 (1038)
Q Consensus 761 ~~ll~~~~~~~~~~~~~A~~~~~~m~~~---------~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 828 (1038)
........ .+|++++-+...+.+... +...+...|.......-..+.+..|......+.. ... +.
T Consensus 927 ~c~te~h~--~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~-d~ 1003 (1238)
T KOG1127|consen 927 LCATEIHL--QNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKL-DE 1003 (1238)
T ss_pred HHHHHHHH--hccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hh
Confidence 11111111 233444444333332221 2233445566555555556666655555443221 111 11
Q ss_pred chHH----HHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCcc-HhhHH
Q 001645 829 LSYS----LYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQA-GIYPT-VHVYT 902 (1038)
Q Consensus 829 ~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-~~~y~ 902 (1038)
..|+ .+.+.++..|.++.|..-+...... .+...-.+-+.. .-.++++++++.|++.... +-..+ ++...
T Consensus 1004 sqynvak~~~gRL~lslgefe~A~~a~~~~~~e---vdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~ 1079 (1238)
T KOG1127|consen 1004 SQYNVAKPDAGRLELSLGEFESAKKASWKEWME---VDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLC 1079 (1238)
T ss_pred hhhhhhhhhhhhhhhhhcchhhHhhhhcccchh---HHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhH
Confidence 2233 3344455566666555444332211 111111111222 3457788888888887651 11233 23444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001645 903 SFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALI 940 (1038)
Q Consensus 903 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li 940 (1038)
.++-.....+..+.|...+-+..... +|+..+.-+|-
T Consensus 1080 kva~~~g~~~~k~~A~~lLfe~~~ls-~~~~~sll~L~ 1116 (1238)
T KOG1127|consen 1080 KVAVCMGLARQKNDAQFLLFEVKSLS-KVQASSLLPLP 1116 (1238)
T ss_pred HHHHHHhhcccchHHHHHHHHHHHhC-ccchhhHHHHH
Confidence 45555566777777777776666542 45555444443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.3e-08 Score=99.85 Aligned_cols=198 Identities=12% Similarity=0.118 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001645 195 TETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRS 274 (1038)
Q Consensus 195 ~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 274 (1038)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4566677777778888888888888777654 5566777777777788888888888887777654 3345566677777
Q ss_pred HHcCCChhHHHHHHHHHHhCCCc-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 001645 275 LCNAGKGDIALEFYKEMAQKEMV-LDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIRE 353 (1038)
Q Consensus 275 ~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 353 (1038)
+...|++++|.+.+++..+.... .....+..+..++...|++++|...+++..+... .+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHH
Confidence 77777777777777777654221 1233444555556666666666666666555321 122334455555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001645 354 ALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIM 396 (1038)
Q Consensus 354 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 396 (1038)
|.+.+++.... ...+...+..+...+...|+.++|..+.+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555555444 1223344444445555555555555554444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.9e-08 Score=99.17 Aligned_cols=227 Identities=13% Similarity=0.098 Sum_probs=138.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 001645 306 VMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGR 385 (1038)
Q Consensus 306 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 385 (1038)
+.++|.+.|-+.+|++.|+.-... .|-+.||..+-++|.+..+.+.|+.++.+-.+.-+. |+....-+.+.+-..++
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhhHHHHHHHHh
Confidence 334444444444444444433331 233344444555555555555555555554443221 33333445555666667
Q ss_pred HHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 001645 386 ISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEM 465 (1038)
Q Consensus 386 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m 465 (1038)
.++|.++++...+..+.+.....++..+|.-.++++-|+.+++++.+.|+. ++..|+.+.-+|...++++-++.-|.+.
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 777777777777766666666666667777777777777777777777754 5666777777777777777777777777
Q ss_pred HHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001645 466 LKRGIQPDS--VAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQA 537 (1038)
Q Consensus 466 ~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (1038)
+..--.|+. .+|-.|-...+..||+.-|.+.|+-....+.. +..+++.|.-.-.+.|+.++|..++.....
T Consensus 385 lstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 385 LSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 665443443 35666666667777777777777777665432 556677776666777777777777776544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.5e-07 Score=98.85 Aligned_cols=243 Identities=18% Similarity=0.147 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 001645 722 PDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKE-LVETY 800 (1038)
Q Consensus 722 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~-~~~~l 800 (1038)
..+...+...|...|+++.|..+++..++. ++...+ . ..|+.. +.+.+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~---------------l~k~~G-~---------------~hl~va~~l~~~ 247 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRI---------------LEKTSG-L---------------KHLVVASMLNIL 247 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH---------------HHHccC-c---------------cCHHHHHHHHHH
Confidence 345556888999999999999999887763 111111 0 011111 11245
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc-----CCCCc---chHHHHHHHHHHcCCHhHHHHHHHHHHHc-----CC-CCCHH-H
Q 001645 801 LDCLCEVGMLQLAKSCMDVLRKV-----GFTVP---LSYSLYIRALCRAGELEEALALLDEVKEE-----RS-KLDEF-V 865 (1038)
Q Consensus 801 i~~~~~~g~~~~A~~~~~~~~~~-----~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~-t 865 (1038)
...|...+++++|..+|+.+... |..++ .+++.|..+|.+.|++++|...+++..+- |. .|.+. .
T Consensus 248 a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~ 327 (508)
T KOG1840|consen 248 ALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ 327 (508)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 56677777777777777766532 23332 56777788888888888888777776541 21 22332 3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCc----cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-
Q 001645 866 FGSLIHGLVQRGQIEEALAKVETMKQ---AGIYP----TVHVYTSFVVHFFREKQVGRALEIFERMRQE-----G-CEP- 931 (1038)
Q Consensus 866 ~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p----~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p- 931 (1038)
++.+...|+..+++++|..+++...+ .-+.+ -..+|+.|...|...|++++|.++|++.++. | ..+
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 56677778888999999998887654 11222 2467899999999999999999999998753 1 122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001645 932 TVVTYTALIQGFANLGKVAEAWDVFYRMKI----KGPF-PD-FRTYSMFIGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 932 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~-~~-~~~~~~l~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
....++.|...|.+.+++.+|.++|.+... .|+. |+ ..+|..|+..|...|++++|.++.+...
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 256678899999999999999999887654 2332 23 3678999999999999999999988776
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.5e-05 Score=83.19 Aligned_cols=222 Identities=16% Similarity=0.206 Sum_probs=138.8
Q ss_pred chhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--------C-CCC-CHHHHHHHHHHHHhcC
Q 001645 175 PHLALRFFNWVKLREGFCHATETYNTMLTIAGEAKELELLEELEREMEIN--------S-CAK-NIKTWTILVSLYGKAK 244 (1038)
Q Consensus 175 ~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~a~~l~~~m~~~--------~-~~~-~~~~~~~li~~~~~~g 244 (1038)
-+.|++-...++ +...|..|.+.|.+.++++-|.-.+-.|... . -.+ +..+- +.-.-...|
T Consensus 744 MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eak--vAvLAieLg 814 (1416)
T KOG3617|consen 744 MDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAK--VAVLAIELG 814 (1416)
T ss_pred HHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhH--HHHHHHHHh
Confidence 345555555553 5678999999999998888877666555321 0 012 12222 222234679
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 001645 245 LIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIAD 324 (1038)
Q Consensus 245 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 324 (1038)
.+++|+.+|++-++. ..|=..|-..|.+++|.++-+.=-+-.+ ..||......+-..+|.+.|++.|+
T Consensus 815 MlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred hHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHH
Confidence 999999999988743 4455566778999999988655333222 2466666666777788888888887
Q ss_pred HHHH----------cC---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 001645 325 DMVR----------IS---------QIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGR 385 (1038)
Q Consensus 325 ~m~~----------~~---------~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 385 (1038)
+.-. .. ...|...|.....-+-..|+.+.|+.+|...+ -|-++++..|-.|+
T Consensus 883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFSMVRIKCIQGK 953 (1416)
T ss_pred hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhhheeeEeeccC
Confidence 6321 10 01122223333333334566666666665433 35566777777888
Q ss_pred HHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 001645 386 ISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMK 431 (1038)
Q Consensus 386 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 431 (1038)
.++|-++-++- .+..+...+...|-..|++.+|..+|.+..
T Consensus 954 ~~kAa~iA~es-----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 954 TDKAARIAEES-----GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred chHHHHHHHhc-----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 88887776542 233456678888888888888888887654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.7e-07 Score=98.24 Aligned_cols=231 Identities=15% Similarity=0.122 Sum_probs=152.5
Q ss_pred ChHHHHHHHHHHHHCCC-CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHH
Q 001645 774 KVDHAIKIFQEMVNAGH-IPD--KELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALAL 850 (1038)
Q Consensus 774 ~~~~A~~~~~~m~~~~~-~~d--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 850 (1038)
..+.++..+.+++.... .|+ ...+..+...|...|+.++|...|+...+..+..+..|+.+...+...|++++|++.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44555556656554321 222 234556666788888888888888888888888888888888889999999999999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001645 851 LDEVKEERSKL-DEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGC 929 (1038)
Q Consensus 851 ~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~ 929 (1038)
|++..+. .| +..+|..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.|++.... .
T Consensus 121 ~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~ 195 (296)
T PRK11189 121 FDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-L 195 (296)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-C
Confidence 9888874 34 4567777888888889999999988888764 333221222222334567788898888765543 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 001645 930 EPTVVTYTALIQGFANLGKVAEAWDVFYRMKIK-------GPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPS 1002 (1038)
Q Consensus 930 ~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~ 1002 (1038)
.|+...+ .+ .....|+..++ +.++.+.+. ++. ...+|..++..|.+.|++++|+..|++..+.+ .|+
T Consensus 196 ~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~-~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~ 269 (296)
T PRK11189 196 DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAER-LCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYN 269 (296)
T ss_pred CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cch
Confidence 3333222 22 22334555443 344444321 112 34678888999999999999999999888643 357
Q ss_pred hhcHHHHHHHHhc
Q 001645 1003 NINFRTIFFGLNR 1015 (1038)
Q Consensus 1003 ~~~~~~l~~~~~~ 1015 (1038)
.+.++..+--+.+
T Consensus 270 ~~e~~~~~~e~~~ 282 (296)
T PRK11189 270 FVEHRYALLELAL 282 (296)
T ss_pred HHHHHHHHHHHHH
Confidence 7777765554433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.6e-08 Score=95.54 Aligned_cols=223 Identities=13% Similarity=0.029 Sum_probs=169.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHH
Q 001645 773 RKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLD 852 (1038)
Q Consensus 773 ~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 852 (1038)
|-+.+|.+.++..++.-.. +.+|..|..+|.+.++...|..++..-.+..|.+.....-..+.+-..++.++|+++++
T Consensus 237 gm~r~AekqlqssL~q~~~--~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk 314 (478)
T KOG1129|consen 237 GMPRRAEKQLQSSLTQFPH--PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYK 314 (478)
T ss_pred cChhhhHHHHHHHhhcCCc--hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHH
Confidence 4666666666666655333 33555566777777777777777777777766655555666777777888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001645 853 EVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPT 932 (1038)
Q Consensus 853 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 932 (1038)
...+. .+.++....++..+|.-.+++|.|+.+++++.+.|+ .+...|+.+.-+|.-.++++-++.-|++.+..--.|+
T Consensus 315 ~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~ 392 (478)
T KOG1129|consen 315 LVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPG 392 (478)
T ss_pred HHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcc
Confidence 88875 234566677777888888899999999999988884 5667788888888888899999998888876533343
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 001645 933 --VVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPS 1002 (1038)
Q Consensus 933 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~ 1002 (1038)
..+|..|....+..|++.-|.+-|+-....+.. +..++|.|...-.+.|+.++|..+++.... +.|+
T Consensus 393 ~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s--~~P~ 461 (478)
T KOG1129|consen 393 QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS--VMPD 461 (478)
T ss_pred hhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh--hCcc
Confidence 456778877788889999999999988887776 778899998888899999999999888765 4454
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.7e-07 Score=86.06 Aligned_cols=208 Identities=14% Similarity=0.065 Sum_probs=173.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 001645 797 VETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQR 876 (1038)
Q Consensus 797 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 876 (1038)
..-+.-.|.+.|+...|+.-+++.++.++....+|..+...|.+.|+.+.|.+.|++.... -+-+....|....-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL-APNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-CCCccchhhhhhHHHHhC
Confidence 3456678999999999999999999999999999999999999999999999999999885 233566788888999999
Q ss_pred CCHHHHHHHHHHHHHc-CCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001645 877 GQIEEALAKVETMKQA-GIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDV 955 (1038)
Q Consensus 877 g~~~~A~~~~~~m~~~-g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~ 955 (1038)
|++++|...|++.... ...--..+|..+.-+..+.|+.+.|...|++.++.. +-...+.-.+.....+.|++..|...
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 9999999999998863 233345778888888899999999999999998752 23456777888999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhcHHHH
Q 001645 956 FYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRTI 1009 (1038)
Q Consensus 956 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l 1009 (1038)
++.....+. ++..+....|..-...|+-+.|-+.=..+.. ..|....+-..
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q~f 246 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQTF 246 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHhH
Confidence 999988877 6888988889999999998888776666654 46766655443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.4e-06 Score=98.89 Aligned_cols=317 Identities=13% Similarity=0.117 Sum_probs=205.0
Q ss_pred HHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----h
Q 001645 695 KTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSG----R 770 (1038)
Q Consensus 695 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~ 770 (1038)
..+...|++++|.+.++.-... +.-...........+.+.|+.++|..+|..+++. .|+...|...+..+.. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhccc
Confidence 3456778999999988775443 2223455566777888899999999999999886 5787777777666652 1
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHH
Q 001645 771 KGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQ-LAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALA 849 (1038)
Q Consensus 771 ~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 849 (1038)
...+.+....+|+++...-...+..- .+.-.+.....+. .+...+......|+ |..++.|-..|....+..-..+
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~--rl~L~~~~g~~F~~~~~~yl~~~l~Kgv--PslF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPR--RLPLDFLEGDEFKERLDEYLRPQLRKGV--PSLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchh--HhhcccCCHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHcChhHHHHHHH
Confidence 22356777888888876543322221 1111111111222 34444555666663 5667777777776666665666
Q ss_pred HHHHHHHc----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc-HhhHHHHHHHHHhcC
Q 001645 850 LLDEVKEE----R----------SKLDEF--VFGSLIHGLVQRGQIEEALAKVETMKQAGIYPT-VHVYTSFVVHFFREK 912 (1038)
Q Consensus 850 ~~~~m~~~----g----------~~p~~~--t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~y~~li~~~~~~g 912 (1038)
++...... | -.|+.. ++.-+...|...|++++|+.++++..+. .|+ +..|..-...|-+.|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCC
Confidence 66665432 1 134443 3355566677889999999999988875 455 677788888888999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHH----HH--HHHHHHHHhcCCh
Q 001645 913 QVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFP--DFR----TY--SMFIGCLCKVGKS 984 (1038)
Q Consensus 913 ~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~----~~--~~l~~~~~~~g~~ 984 (1038)
++.+|.+.++...+.. .-|.+.-+-.+..+.++|++++|.+++......+..| |.. .| .-.+.+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999999998888753 3466666667777789999999999988887665322 211 22 3446778889998
Q ss_pred HHHHHHHHHHHHC--CCC----------CChhcHHHHHHHHhccCChhh
Q 001645 985 EEALELLSEMTES--GIV----------PSNINFRTIFFGLNREDNLYQ 1021 (1038)
Q Consensus 985 ~~A~~l~~~m~~~--g~~----------p~~~~~~~l~~~~~~~g~~~~ 1021 (1038)
..|++.|..+.+. .+. -...|+++.++.+..++++..
T Consensus 322 ~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~ 370 (517)
T PF12569_consen 322 GLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRS 370 (517)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 8888877766531 111 133556666666666554443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.3e-05 Score=77.91 Aligned_cols=273 Identities=12% Similarity=0.058 Sum_probs=192.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 001645 719 LITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVE 798 (1038)
Q Consensus 719 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~ 798 (1038)
+-|+.....+...+...|+..+|...|+..+-. .|+..+-.-+...+.. ..|+.+....+...+....- -+..-|-
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~-~eg~~e~~~~L~~~Lf~~~~-~ta~~wf 304 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLG-QEGGCEQDSALMDYLFAKVK-YTASHWF 304 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHH-hccCHhhHHHHHHHHHhhhh-cchhhhh
Confidence 347778888888888999999999999887753 5555544333333343 33477777777777655431 1111111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 001645 799 TYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQ 878 (1038)
Q Consensus 799 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 878 (1038)
--...+...+++..|..+-.+..+..+.+...+-.-...+...|++++|.-.|...+.. -+-+...|..|++.|...|+
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhch
Confidence 12233445678888888888888888777777777778888899999999999988774 23467889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCccHhhHHHHH-HHHH-hcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 001645 879 IEEALAKVETMKQAGIYPTVHVYTSFV-VHFF-REKQVGRALEIFERMRQEGCEPTV-VTYTALIQGFANLGKVAEAWDV 955 (1038)
Q Consensus 879 ~~~A~~~~~~m~~~g~~p~~~~y~~li-~~~~-~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~A~~~ 955 (1038)
+.||..+-+...+. ++.+..+.+.+. ..|. .-.--++|.+++++-+. +.|+- ...+.+...|...|+.+.++.+
T Consensus 384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 99988776665542 234444444442 2222 22235788888888775 36764 3456677788889999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 001645 956 FYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSN 1003 (1038)
Q Consensus 956 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 1003 (1038)
+++.... .||....+.|.+.+...+.+.+|++.|...+. +.|+.
T Consensus 461 Le~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 461 LEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 9987764 56888899999999999999999999888775 45644
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.9e-06 Score=95.32 Aligned_cols=295 Identities=15% Similarity=0.091 Sum_probs=150.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-
Q 001645 200 TMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNA- 278 (1038)
Q Consensus 200 ~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~- 278 (1038)
....++...|++++|.+.++.-... +.............+.+.|+.++|..+|..+.+.+ +.|..-|..+..++.-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhc
Confidence 3445667778888888888765433 24445566667777778888888888888888774 33333444444444222
Q ss_pred ----CChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 001645 279 ----GKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREA 354 (1038)
Q Consensus 279 ----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 354 (1038)
.+.+...++|+++...- |.......+.-.+..-.++. ..+
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~----------------------------------~~~ 130 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFK----------------------------------ERL 130 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHH----------------------------------HHH
Confidence 23455566666665542 22222211111111111111 112
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------------CCCCh--hhHHHHHHHHhcc
Q 001645 355 LEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRR---------------NLVDG--KIYGIIIGGYLRK 417 (1038)
Q Consensus 355 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~--~~~~~li~~~~~~ 417 (1038)
..++..+..+|++ .+|+.|-..|....+.+-...++...... .+++. .++..+...|-..
T Consensus 131 ~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~ 207 (517)
T PF12569_consen 131 DEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL 207 (517)
T ss_pred HHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHh
Confidence 2223333333332 23333333333333333333333332211 01111 2334445555556
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001645 418 NDLSKALVQFERMKESGYLPM-ASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKV 496 (1038)
Q Consensus 418 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 496 (1038)
|++++|++++++..+. .|+ +..|..-...+-+.|++.+|.+.++...+.... |-..=+..+..+.++|++++|.++
T Consensus 208 g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~ 284 (517)
T PF12569_consen 208 GDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKT 284 (517)
T ss_pred CCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6666666666655554 233 445555555666666666666666666555422 555555556666666666666666
Q ss_pred HHHHHhCCCCCCHH------HH--HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001645 497 FKCMEDKGIRPTRK------SY--SVFIKELCRVSRTNEILKVLNNMQAS 538 (1038)
Q Consensus 497 ~~~m~~~g~~p~~~------~~--~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (1038)
+......+..|... .| .....+|.+.|++..|++.|....+.
T Consensus 285 ~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 285 ASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 66665544322111 12 23346677777777777777666543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.88 E-value=0.00036 Score=77.57 Aligned_cols=190 Identities=16% Similarity=0.139 Sum_probs=105.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 001645 205 AGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIA 284 (1038)
Q Consensus 205 l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 284 (1038)
+...|+++.|..-|-+.. .....|.+-.....|.+|+.+++.+.+.. .-+..|..+..-|+..|+++.|
T Consensus 716 l~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~a 784 (1636)
T KOG3616|consen 716 LEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIA 784 (1636)
T ss_pred HHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHH
Confidence 334456666655443332 12233455556677778888777776542 2233466667777777888888
Q ss_pred HHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001645 285 LEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSK 364 (1038)
Q Consensus 285 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 364 (1038)
+++|-+. ..++-.|.+|.+.|+++.|.++-.+.. |.......|..-..-+-+.|++.+|.++|-.+-.
T Consensus 785 e~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~- 852 (1636)
T KOG3616|consen 785 EELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE- 852 (1636)
T ss_pred HHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC-
Confidence 7777543 245666777778888877777665542 2333444465555666667777777666543221
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHH
Q 001645 365 EISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQF 427 (1038)
Q Consensus 365 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 427 (1038)
|+ ..|.+|-+.|..|+..++.++-..... ..+...+..-|-..|++..|..-|
T Consensus 853 ---p~-----~aiqmydk~~~~ddmirlv~k~h~d~l--~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 853 ---PD-----KAIQMYDKHGLDDDMIRLVEKHHGDHL--HDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred ---ch-----HHHHHHHhhCcchHHHHHHHHhChhhh--hHHHHHHHHHHHhccChhHHHHHH
Confidence 11 235566666666666665544321111 123334444444455555554444
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.1e-05 Score=81.85 Aligned_cols=52 Identities=21% Similarity=0.097 Sum_probs=33.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 001645 236 LVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFY 288 (1038)
Q Consensus 236 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 288 (1038)
=++.+...|++++|+..-.++...+ +-|...+..=+-++.+.+++++|+.+.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~i 69 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLI 69 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHH
Confidence 3455666777777777777776554 444555666666667777777776443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.4e-07 Score=99.69 Aligned_cols=232 Identities=14% Similarity=0.128 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCC---cchHHHHHHHHHHcCCHhHHHHHHHHHHHc-----CC-C
Q 001645 795 ELVETYLDCLCEVGMLQLAKSCMDVLRKV-----GFTV---PLSYSLYIRALCRAGELEEALALLDEVKEE-----RS-K 860 (1038)
Q Consensus 795 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~ 860 (1038)
.+...+..+|...|+++.|..++....+. |... ....+.+...|...+++.+|..+|+++..- |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445888999999999999999877665 2222 234567788999999999999999998762 21 2
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCC-CccH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC
Q 001645 861 LD-EFVFGSLIHGLVQRGQIEEALAKVETMKQ-----AGI-YPTV-HVYTSFVVHFFREKQVGRALEIFERMRQE---GC 929 (1038)
Q Consensus 861 p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~~-~~y~~li~~~~~~g~~~~A~~~~~~m~~~---g~ 929 (1038)
|. ..+++.|..+|.+.|++++|...++...+ .|. .|.+ ..++.+...|+..+++++|..++.+..+. -.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 22 34688888899999999999988887654 222 2333 34667888899999999999999987653 12
Q ss_pred CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH---
Q 001645 930 EPT----VVTYTALIQGFANLGKVAEAWDVFYRMKIKG----P--FP-DFRTYSMFIGCLCKVGKSEEALELLSEMT--- 995 (1038)
Q Consensus 930 ~pd----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~--~~-~~~~~~~l~~~~~~~g~~~~A~~l~~~m~--- 995 (1038)
.++ ..+++.|...|.+.|++++|.++++++++.. . .+ ....++.|...|.+.+++++|.++|.+-.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 233 4578999999999999999999999988641 1 11 24678899999999999999999998854
Q ss_pred -HCCCC-C-ChhcHHHHHHHHhccCChhhhhcCC
Q 001645 996 -ESGIV-P-SNINFRTIFFGLNREDNLYQITKRP 1026 (1038)
Q Consensus 996 -~~g~~-p-~~~~~~~l~~~~~~~g~~~~~~~~~ 1026 (1038)
..|.. | ...+|..|...|.+.|++|++.+.-
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~ 473 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELE 473 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHH
Confidence 33322 3 3578999999999999999965543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.81 E-value=0.00011 Score=76.58 Aligned_cols=289 Identities=12% Similarity=0.020 Sum_probs=215.2
Q ss_pred hhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001645 667 GSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFE 746 (1038)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 746 (1038)
...+...+-......-++.+......+.+.+...|+..+|...|+...-.++. +..........+.+.|+.+..-.+..
T Consensus 212 hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~ 290 (564)
T KOG1174|consen 212 HSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMD 290 (564)
T ss_pred cchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHH
Confidence 34455555566667778888899999999999999999999999988765322 22222223445567899998888888
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001645 747 DMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFT 826 (1038)
Q Consensus 747 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 826 (1038)
.+.... +-....|. +.++.....++++.|+.+-+..++.+.. +...+-.-...+...|+.++|.-.|+......|.
T Consensus 291 ~Lf~~~-~~ta~~wf--V~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~ 366 (564)
T KOG1174|consen 291 YLFAKV-KYTASHWF--VHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPY 366 (564)
T ss_pred HHHhhh-hcchhhhh--hhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchh
Confidence 777531 11222222 2222222345899999999988876532 2334444456778899999999999999998888
Q ss_pred CcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHcCCCcc-HhhHHH
Q 001645 827 VPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLI-HGLVQ-RGQIEEALAKVETMKQAGIYPT-VHVYTS 903 (1038)
Q Consensus 827 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li-~~~~~-~g~~~~A~~~~~~m~~~g~~p~-~~~y~~ 903 (1038)
.-.+|.-|+..|...|++.||.-+-++.... +.-+..+.+.+. ..|.- ..--++|..++++-.+. .|+ ....+.
T Consensus 367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~ 443 (564)
T KOG1174|consen 367 RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNL 443 (564)
T ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHH
Confidence 8889999999999999999999988877664 445666666553 33332 23347888888877653 454 456677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001645 904 FVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 904 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 965 (1038)
+...|...|..++++.++++.+.. .||....+.|.+.+.....+.+|+..|......+|.
T Consensus 444 ~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 444 IAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 888999999999999999999874 799999999999999999999999999999888776
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.1e-06 Score=81.59 Aligned_cols=198 Identities=13% Similarity=0.006 Sum_probs=168.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhcc
Q 001645 338 YGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRK 417 (1038)
Q Consensus 338 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 417 (1038)
...+.-+|...|+...|.+-+++.++..+. +..++..+...|.+.|+.+.|.+-|++..+..+.+..+.|.....+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 455667888999999999999998887666 6788999999999999999999999999999998888899999999999
Q ss_pred CCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001645 418 NDLSKALVQFERMKESGY-LPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKV 496 (1038)
Q Consensus 418 g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 496 (1038)
|++++|...|++....-. .--..||..+.-+..+.|+.+.|...|++.++.... ...+.-.+.....+.|++-.|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHH
Confidence 999999999999887632 223567888888888999999999999999987432 455677788889999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001645 497 FKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQAS 538 (1038)
Q Consensus 497 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (1038)
++.....+. ++..+.-..|+.--+.|+.+.+-++=.++...
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 999888776 78888888888888899998888877777653
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.3e-05 Score=87.76 Aligned_cols=306 Identities=15% Similarity=0.035 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHcCC-CCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-hHHH-
Q 001645 687 SATYNMAIKTAGRGKDFKHMRNLFYEMRRNGY-LITPD-TWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGS-TYKY- 762 (1038)
Q Consensus 687 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~- 762 (1038)
...|..+...+...++.+.+...+....+... .++.. ........+...|++++|.+.+++..+. .|+.. .+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLH 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHh
Confidence 34555556666667777777666666544322 22322 2222344566789999999999998876 45443 2221
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHc
Q 001645 763 LIISLSGRKGRKVDHAIKIFQEMVNAGHIPD-KELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRA 841 (1038)
Q Consensus 763 ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 841 (1038)
+.........+..+.+...+.. .....|+ ......+...+...|++++|...++...+..+.++..+..+...|...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 0111111123455566665554 2223343 344456677889999999999999999999998888899999999999
Q ss_pred CCHhHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CccHhhH-H--HHHHHHHhcCCH
Q 001645 842 GELEEALALLDEVKEERS-KLDE--FVFGSLIHGLVQRGQIEEALAKVETMKQAGI-YPTVHVY-T--SFVVHFFREKQV 914 (1038)
Q Consensus 842 g~~~~A~~~~~~m~~~g~-~p~~--~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~y-~--~li~~~~~~g~~ 914 (1038)
|++++|...+++...... .|+. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 999999999999887532 2333 3455788889999999999999999864321 1112111 1 333444445543
Q ss_pred HHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHhc
Q 001645 915 GRALEIFERMRQE--GCEPT---VVTYTALIQGFANLGKVAEAWDVFYRMKIKGPF--------PDFRTYSMFIGCLCKV 981 (1038)
Q Consensus 915 ~~A~~~~~~m~~~--g~~pd---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------~~~~~~~~l~~~~~~~ 981 (1038)
..+.+. +.+... ...|+ .........++...|+.++|.++++.+....-. ...........++...
T Consensus 242 ~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 242 DVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred ChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 332222 222211 00011 122235667778999999999999988763211 1234445556667899
Q ss_pred CChHHHHHHHHHHHHC
Q 001645 982 GKSEEALELLSEMTES 997 (1038)
Q Consensus 982 g~~~~A~~l~~~m~~~ 997 (1038)
|++++|.+.+.+....
T Consensus 321 g~~~~A~~~L~~al~~ 336 (355)
T cd05804 321 GNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988753
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=4e-06 Score=90.21 Aligned_cols=229 Identities=13% Similarity=0.029 Sum_probs=148.6
Q ss_pred CChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001645 736 GLTEMAMRVFEDMKANG-CNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAK 814 (1038)
Q Consensus 736 g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~ 814 (1038)
+..+.++.-+.+++... ..|+...-.....+......|+.++|...|++.++... .+...++.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 34556666666666431 22222111111112222244578888888887777643 34677888888899999999999
Q ss_pred HHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001645 815 SCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGI 894 (1038)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 894 (1038)
..|+...+..+....+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|.+.....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 9999999888888888888999999999999999999998885 4543322222333445678999999997655332
Q ss_pred CccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 001645 895 YPTVHVYTSFVVHFFREKQVGRALEIFERMRQE---G--CEP-TVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDF 968 (1038)
Q Consensus 895 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~---g--~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 968 (1038)
.|+...+ .+ .....|+...+ +.++.+.+. . +.| ....|..+...+.+.|++++|...|++..+.++. |.
T Consensus 196 ~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~-~~ 270 (296)
T PRK11189 196 DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY-NF 270 (296)
T ss_pred CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-hH
Confidence 3333222 22 22335555444 345555432 1 111 2357889999999999999999999999988765 55
Q ss_pred HHHHH
Q 001645 969 RTYSM 973 (1038)
Q Consensus 969 ~~~~~ 973 (1038)
+-+..
T Consensus 271 ~e~~~ 275 (296)
T PRK11189 271 VEHRY 275 (296)
T ss_pred HHHHH
Confidence 44443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=0.00059 Score=79.10 Aligned_cols=183 Identities=14% Similarity=0.090 Sum_probs=130.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 001645 350 RIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFER 429 (1038)
Q Consensus 350 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 429 (1038)
+...|+..|-+.....+. =...|..|...|+...+...|...|++..+-+..+...+....+.|+...+++.|..+.-.
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 355565555544443332 2457888999999988999999999999999888888899999999999999999988433
Q ss_pred HHHCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 001645 430 MKESGY-LPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPT 508 (1038)
Q Consensus 430 m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 508 (1038)
.-+... ..-...|...--.+.+.++...+..-|+..++.. +-|...|..+..+|..+|.+..|.++|.+..... |+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cH
Confidence 322210 0011122223334567788888888888888775 3377889999999999999999999998877652 33
Q ss_pred HHHHHHH--HHHHHhcCCHHHHHHHHHHHHh
Q 001645 509 RKSYSVF--IKELCRVSRTNEILKVLNNMQA 537 (1038)
Q Consensus 509 ~~~~~~l--i~~~~~~g~~~~A~~~~~~m~~ 537 (1038)
. .|... ....|..|++.+|+..+.....
T Consensus 629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 629 S-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred h-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2 23222 2235678899999888877654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.1e-05 Score=76.97 Aligned_cols=196 Identities=10% Similarity=0.052 Sum_probs=132.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhc
Q 001645 337 AYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLR 416 (1038)
Q Consensus 337 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~ 416 (1038)
-+.+.+..+.+..+++.|++++....+...+ +....+.|..+|....++..|-..++.+....+.-..-----...+.+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK 90 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 3566666677778888888888777666544 566777788888888888888888888776555422211222445566
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001645 417 KNDLSKALVQFERMKESGYLPMASTYTELMQH--LFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAW 494 (1038)
Q Consensus 417 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 494 (1038)
.+.+..|+++...|.+. |+...-..-+.+ ....+++..+..+.++.... .+..+.+.......+.|++++|.
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHH
Confidence 77888888888777653 222221112222 23456777777777765532 24555566666677899999999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 001645 495 KVFKCMEDK-GIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASKIV 541 (1038)
Q Consensus 495 ~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 541 (1038)
+-|+...+- |.. ....|+..+ +..+.++++.|++...++++.|++
T Consensus 165 qkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 165 QKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 999988765 554 456777654 456778999999999999988764
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.0001 Score=82.54 Aligned_cols=198 Identities=11% Similarity=0.018 Sum_probs=106.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----hhhHHHHHHHHh
Q 001645 340 CVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVD----GKIYGIIIGGYL 415 (1038)
Q Consensus 340 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~li~~~~ 415 (1038)
.+...+...|++++|.+.+++..+..+. +...+..+...|...|++++|...+++.....+.+ ...|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 3445556667777777777766665433 45556666666777777777777776666544321 123445666677
Q ss_pred ccCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCChhHHHHH--HHHH-HHCCC-CCCHHHHHHHHHHHHhc
Q 001645 416 RKNDLSKALVQFERMKESGY-LPMASTY-T--ELMQHLFKLNEYKKGCEL--YNEM-LKRGI-QPDSVAVTAMVAGHVRQ 487 (1038)
Q Consensus 416 ~~g~~~~A~~~~~~m~~~g~-~p~~~t~-~--~ll~~~~~~~~~~~a~~l--~~~m-~~~g~-~p~~~~~~~li~~~~~~ 487 (1038)
..|++++|+.++++...... .+..... + .++..+...|....+.+. +... ..... ............++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 77777777777777643321 1111111 1 222222333332322222 1111 11100 11122223566677888
Q ss_pred CCHHHHHHHHHHHHhCCCCC---C---HHHHHHHH--HHHHhcCCHHHHHHHHHHHHhC
Q 001645 488 DNLSEAWKVFKCMEDKGIRP---T---RKSYSVFI--KELCRVSRTNEILKVLNNMQAS 538 (1038)
Q Consensus 488 g~~~~A~~~~~~m~~~g~~p---~---~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~ 538 (1038)
|+.+.|...++.+......+ . ...-..++ -++...|+.++|.+.+......
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 89999999998876532110 0 11122222 3346789999999998887653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00023 Score=70.95 Aligned_cols=289 Identities=11% Similarity=0.032 Sum_probs=177.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHH
Q 001645 198 YNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVL-VRSLC 276 (1038)
Q Consensus 198 ~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~ 276 (1038)
+.+++..+.+..++..|.+++..-.++. +.+....+.|..+|-...++..|-..++.+... .|...-|... ...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 5566666777888888888888877765 557777888888888888888888888888765 4554444322 34556
Q ss_pred cCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 001645 277 NAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNC--AAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREA 354 (1038)
Q Consensus 277 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 354 (1038)
+.+.+..|+.+...|... |+...-..-+.+ ....+|+..+..+.++.-.. .+..+.+.......+.|++++|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHH
Confidence 777888888888777653 222222222222 33457777777777655321 2233344444445677888888
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--------------h---------------
Q 001645 355 LEFIRNLKSK-EISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVD--------------G--------------- 404 (1038)
Q Consensus 355 ~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--------------~--------------- 404 (1038)
.+-|+...+- |.. ....|+.-+..| +.|+++.|++...++.++|..+ .
T Consensus 164 vqkFqaAlqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 8888876664 444 455677666544 5678888888888777665421 0
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001645 405 KIYGIIIGGYLRKNDLSKALVQFERMKES-GYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAG 483 (1038)
Q Consensus 405 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~ 483 (1038)
.++|.-...+.+.++++.|.+.+.+|.-. .-..|++|...+.-.- ..+++.+..+-+..+++... -...|+..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 12333334455667777777777776533 2345666655543221 22445555555555555533 234566666667
Q ss_pred HHhcCCHHHHHHHHHH
Q 001645 484 HVRQDNLSEAWKVFKC 499 (1038)
Q Consensus 484 ~~~~g~~~~A~~~~~~ 499 (1038)
||++.-++.|-+++.+
T Consensus 320 yCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAE 335 (459)
T ss_pred HhhhHHHhHHHHHHhh
Confidence 7777777777766654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00047 Score=75.05 Aligned_cols=90 Identities=16% Similarity=-0.026 Sum_probs=56.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCH
Q 001645 801 LDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLD-EFVFGSLIHGLVQRGQI 879 (1038)
Q Consensus 801 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~ 879 (1038)
...+.+.|++..|..-++++.+..|.+...|+....+|.+.|.+.+|++-.+...+. .|+ ...|.-=..++....++
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777777777777777777777777777777666664 232 22233333333344556
Q ss_pred HHHHHHHHHHHHc
Q 001645 880 EEALAKVETMKQA 892 (1038)
Q Consensus 880 ~~A~~~~~~m~~~ 892 (1038)
+.|++.|++-.+.
T Consensus 443 dkAleay~eale~ 455 (539)
T KOG0548|consen 443 DKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHHhc
Confidence 6666666665554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00095 Score=72.73 Aligned_cols=188 Identities=15% Similarity=0.126 Sum_probs=89.6
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-
Q 001645 691 NMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSG- 769 (1038)
Q Consensus 691 ~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~- 769 (1038)
..+.+..-+..+++.|.+-+....+.. -+..-++....+|...|.+.++...-....+.|.. ...-|+.+-.++..
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 445556666777888888887777655 25556666777888888887777766665554421 11112211111111
Q ss_pred ----hcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHh
Q 001645 770 ----RKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELE 845 (1038)
Q Consensus 770 ----~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 845 (1038)
.+.++++.++..|.+.+.....||. ..++...+++........-.++.-..-...-...+.+.|++.
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHH
Confidence 1223445555555554433333321 222233333333333322222221111111133444455555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001645 846 EALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQ 891 (1038)
Q Consensus 846 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 891 (1038)
.|+..|++++... +-|...|....-+|.+.|.+.+|+.-.+...+
T Consensus 376 ~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 376 EAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred HHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 5555555555442 33444555555555555555555554444443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.4e-07 Score=61.94 Aligned_cols=32 Identities=25% Similarity=0.528 Sum_probs=17.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001645 858 RSKLDEFVFGSLIHGLVQRGQIEEALAKVETM 889 (1038)
Q Consensus 858 g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 889 (1038)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.43 E-value=3e-06 Score=89.73 Aligned_cols=150 Identities=23% Similarity=0.257 Sum_probs=95.7
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHh----c
Q 001645 836 RALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFR----E 911 (1038)
Q Consensus 836 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~----~ 911 (1038)
..+...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+. ..|.. ...|..++.. .
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~-l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSI-LTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHH-HHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH-HHHHHHHHHHHHhCc
Confidence 3445567777777776542 34555566677777778888888777777764 23322 2223333322 2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHH
Q 001645 912 KQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKS-EEALEL 990 (1038)
Q Consensus 912 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~l 990 (1038)
..+.+|..+|+++.+. +.++..+.+.+..++...|++++|.+++++..+.++. |+.+...++.+....|+. +.+.++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHH
Confidence 3577888888887654 4667777777777888888888888888887777666 677777777777777777 566677
Q ss_pred HHHHHH
Q 001645 991 LSEMTE 996 (1038)
Q Consensus 991 ~~~m~~ 996 (1038)
+.+++.
T Consensus 259 l~qL~~ 264 (290)
T PF04733_consen 259 LSQLKQ 264 (290)
T ss_dssp HHHCHH
T ss_pred HHHHHH
Confidence 777764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00015 Score=78.00 Aligned_cols=191 Identities=12% Similarity=0.010 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCH--hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001645 810 LQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGEL--EEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVE 887 (1038)
Q Consensus 810 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 887 (1038)
++++...++.+.+..+.+..+|+.....+.+.|+. ++++.+++++.+.. +-+..+|+-...++.+.|+++++++.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34444444444444444444454444344444432 45555555555532 2345555555555555666666666666
Q ss_pred HHHHcCCCccHhhHHHHHHHHHhc---CC----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHH
Q 001645 888 TMKQAGIYPTVHVYTSFVVHFFRE---KQ----VGRALEIFERMRQEGCEPTVVTYTALIQGFANL----GKVAEAWDVF 956 (1038)
Q Consensus 888 ~m~~~g~~p~~~~y~~li~~~~~~---g~----~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~----g~~~~A~~~~ 956 (1038)
++.+.+ +-|..+|+.....+.+. |. .++++++..+++... +-|...|+.+...+... ++..+|.+.+
T Consensus 167 ~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 167 QLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 665544 33444555444444332 11 245666665665542 23556666666666552 3445677777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcC------------------ChHHHHHHHHHHHHCCCCCChhcH
Q 001645 957 YRMKIKGPFPDFRTYSMFIGCLCKVG------------------KSEEALELLSEMTESGIVPSNINF 1006 (1038)
Q Consensus 957 ~~m~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~A~~l~~~m~~~g~~p~~~~~ 1006 (1038)
.+....++. ++.....|++.|+... ..++|.++++.+. ...|=...|
T Consensus 245 ~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~--~~d~ir~~y 309 (320)
T PLN02789 245 LEVLSKDSN-HVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE--VADPMRRNY 309 (320)
T ss_pred HHhhcccCC-cHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH--hhCcHHHHH
Confidence 776666555 6677777778777532 2367888888773 344533333
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.9e-07 Score=61.52 Aligned_cols=32 Identities=28% Similarity=0.614 Sum_probs=16.0
Q ss_pred CCCccHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001645 893 GIYPTVHVYTSFVVHFFREKQVGRALEIFERM 924 (1038)
Q Consensus 893 g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 924 (1038)
|+.||.++||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555444
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.2e-05 Score=77.28 Aligned_cols=164 Identities=10% Similarity=0.106 Sum_probs=118.4
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCH
Q 001645 835 IRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQV 914 (1038)
Q Consensus 835 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~ 914 (1038)
+-.|...|+++......+.+.. |. ..+...++.+++...++...+.+ +.|...|..|...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 4567777777665443322211 11 01223566777777777777654 67888899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 001645 915 GRALEIFERMRQEGCEPTVVTYTALIQGF-ANLGK--VAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELL 991 (1038)
Q Consensus 915 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~-~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~ 991 (1038)
++|...|++..+.. +-+...+..+..++ ...|+ .++|.+++++..+.++. +..++..+...+...|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999988753 33667777777764 67777 58999999999998888 8889999999999999999999999
Q ss_pred HHHHHCCCCCChhcHHHHHHHHhc
Q 001645 992 SEMTESGIVPSNINFRTIFFGLNR 1015 (1038)
Q Consensus 992 ~~m~~~g~~p~~~~~~~l~~~~~~ 1015 (1038)
+++.+. .|....-..+|.+...
T Consensus 168 ~~aL~l--~~~~~~r~~~i~~i~~ 189 (198)
T PRK10370 168 QKVLDL--NSPRVNRTQLVESINM 189 (198)
T ss_pred HHHHhh--CCCCccHHHHHHHHHH
Confidence 999863 3434455556555433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00025 Score=76.42 Aligned_cols=199 Identities=18% Similarity=0.121 Sum_probs=136.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001645 792 PDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIH 871 (1038)
Q Consensus 792 ~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 871 (1038)
||...+...+.+.........+...+.+..+ +.....+.-..-.+...|++++|+..++.+... .+-|...+.....
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~ 348 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGD 348 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 4444444444444333333333333333333 122344444455667789999999999998875 3345555566778
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCcc-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 001645 872 GLVQRGQIEEALAKVETMKQAGIYPT-VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVA 950 (1038)
Q Consensus 872 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~ 950 (1038)
.+.+.++.++|.+.++.+... .|+ ....-.+..+|.+.|+..+|+.++++.... .+-|+..|..|..+|...|+..
T Consensus 349 i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 349 ILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchH
Confidence 888999999999999998875 455 566677888999999999999999998876 3568899999999999999887
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCChhcHHHHHHHHh
Q 001645 951 EAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTES--GIVPSNINFRTIFFGLN 1014 (1038)
Q Consensus 951 ~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~~~~~l~~~~~ 1014 (1038)
+|... ..+.|...|+|++|+..+....+. .-.|++.-+...|+...
T Consensus 426 ~a~~A------------------~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~~~ 473 (484)
T COG4783 426 EALLA------------------RAEGYALAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQLR 473 (484)
T ss_pred HHHHH------------------HHHHHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHH
Confidence 76554 345577889999999998888764 22344444445555443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.2e-05 Score=85.15 Aligned_cols=149 Identities=13% Similarity=0.112 Sum_probs=64.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh--hhHHHHHHHHhccCCHHH
Q 001645 345 FCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDG--KIYGIIIGGYLRKNDLSK 422 (1038)
Q Consensus 345 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~ 422 (1038)
+...|++++|++++... .+.......+..|.+.+++|.|.+.++.|.+.+-.+. ....+.+..+.-.+.+.+
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCH
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHH
Confidence 33445555555554321 1344444555555566666666666655554432211 111222222222234555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 001645 423 ALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNL-SEAWKVFKCME 501 (1038)
Q Consensus 423 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 501 (1038)
|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+.++... -+..+...++.+....|+. +.+.+++.++.
T Consensus 186 A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 186 AFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 55555554432 334455555555555555555555555555444321 1333333344444444443 34444444444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0016 Score=83.14 Aligned_cols=334 Identities=9% Similarity=-0.004 Sum_probs=190.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------CCCHH--HHHHHHHHHH
Q 001645 205 AGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGF------EPDAV--AYKVLVRSLC 276 (1038)
Q Consensus 205 l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~p~~~--~~~~ll~~~~ 276 (1038)
+...|+++.+..+++.+.......+..........+...|++++|..++....+.-- .+... ....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344566776666666553221112222233344455667888888888877654210 11111 1122233455
Q ss_pred cCCChhHHHHHHHHHHhCCCcCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---C--ChhhHHHHHHHHHh
Q 001645 277 NAGKGDIALEFYKEMAQKEMVLDL----SLYKIVMNCAAKLGDVDAVLSIADDMVRISQI---P--ERDAYGCVLKSFCV 347 (1038)
Q Consensus 277 ~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---p--~~~~~~~ll~~~~~ 347 (1038)
..|+++.|...+++..+.-...+. ...+.+...+...|++++|...+++....... + ...++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 678888888888887653111121 23455666677788888888888877653211 1 11234455566777
Q ss_pred cCCHHHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-ChhhHHHHHHHHh
Q 001645 348 SMRIREALEFIRNLKS----KEIS--M-DRDHFETLVKGLCIAGRISDALEIVDIMMRR----NLV-DGKIYGIIIGGYL 415 (1038)
Q Consensus 348 ~g~~~~A~~~~~~m~~----~~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~li~~~~ 415 (1038)
.|++++|...+++... .+.. + ....+..+...+...|++++|...+++.... +.. ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 8888888888776543 2211 1 1233445556677778888888888776442 111 1234455666777
Q ss_pred ccCCHHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh
Q 001645 416 RKNDLSKALVQFERMKESG--YLPMAS--TY--TELMQHLFKLNEYKKGCELYNEMLKRGIQPD---SVAVTAMVAGHVR 486 (1038)
Q Consensus 416 ~~g~~~~A~~~~~~m~~~g--~~p~~~--t~--~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~---~~~~~~li~~~~~ 486 (1038)
..|+++.|.+.+.+..... ...... .. ...+..+...|+.+.|.+.+........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8888888888887764421 111110 00 1112333456778888877766543211111 1113456667778
Q ss_pred cCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001645 487 QDNLSEAWKVFKCMEDK----GIRPT-RKSYSVFIKELCRVSRTNEILKVLNNMQAS 538 (1038)
Q Consensus 487 ~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (1038)
.|+.++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888776542 32221 234555666777888888888888887654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00021 Score=76.79 Aligned_cols=208 Identities=10% Similarity=0.001 Sum_probs=161.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcC-CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH--H
Q 001645 804 LCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAG-ELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQI--E 880 (1038)
Q Consensus 804 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~--~ 880 (1038)
+...++.++|..+.+.+.+..+.+..+|+.....+...| ++++++..++++.+.. +.+..+|+.....+.+.|+. +
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhH
Confidence 334567788899999999988888888888888888888 6899999999999863 34556777666666667763 6
Q ss_pred HHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CC----HHHHH
Q 001645 881 EALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANL---GK----VAEAW 953 (1038)
Q Consensus 881 ~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~---g~----~~~A~ 953 (1038)
+++.+++.+.+.+ +-|..+|+....++...|+++++++.++++++.+ .-|...|+.....+.+. |. .+++.
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 7889998998765 5678999999999999999999999999999875 34566777666666554 22 35788
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCChhcHHHHHHHHhcc
Q 001645 954 DVFYRMKIKGPFPDFRTYSMFIGCLCKV----GKSEEALELLSEMTESGIVPSNINFRTIFFGLNRE 1016 (1038)
Q Consensus 954 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~ 1016 (1038)
....+++...|. |..+|+.+..+|... ++..+|.+.+.+..+.+ ..+...+..|++.+...
T Consensus 204 ~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 204 KYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhh
Confidence 888888888888 889999999999883 45577999988876532 23566778888888753
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00025 Score=84.90 Aligned_cols=228 Identities=10% Similarity=0.049 Sum_probs=152.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHH
Q 001645 227 AKNIKTWTILVSLYGKAKLIGKALLVFEKMRKY-GFEP---DAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSL 302 (1038)
Q Consensus 227 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 302 (1038)
|-+...|..-|......+++++|.+++++.... +++- -.-.|.++++.-...|.-+...++|+++.+.. . ....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHH
Confidence 445677777777777888888888888777632 1111 12356667766666677777777887776641 1 2346
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 001645 303 YKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISM-DRDHFETLVKGLC 381 (1038)
Q Consensus 303 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~ 381 (1038)
|..|...|.+.+.+++|.++++.|.+.-. ....+|...+..+.++.+.+.|..++.+.++.-++- -.......+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 77777778888888888888888877532 445567777777777777778888877766543331 2344555666667
Q ss_pred HcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhH
Q 001645 382 IAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMA--STYTELMQHLFKLNEYKK 457 (1038)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~ 457 (1038)
+.|+.+++..+|+......+.-...|+..|+.-.+.|+.+.+..+|++....++.|-- ..|...+..=-..|+-..
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 7888888888888888777776677888888888888888888888888777665532 334444443333344333
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.1e-05 Score=82.96 Aligned_cols=219 Identities=18% Similarity=0.104 Sum_probs=160.3
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHH
Q 001645 771 KGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALAL 850 (1038)
Q Consensus 771 ~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 850 (1038)
+.|++.+|.-.|+..++.++ -+...|..|...-...++-..|+..+....+..+.+..+.-.|.-.|...|.-.+|+.+
T Consensus 297 ~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 44567777777777776642 24566666666677777777888888888888888777778888888888888888888
Q ss_pred HHHHHHcCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCccHhhHHHHHHHHHhcCCHHHHHHHH
Q 001645 851 LDEVKEERSKL--------DEFVFGSLIHGLVQRGQIEEALAKVETMK-QAGIYPTVHVYTSFVVHFFREKQVGRALEIF 921 (1038)
Q Consensus 851 ~~~m~~~g~~p--------~~~t~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~ 921 (1038)
|+..+....+- +...-+. ..+.....+....++|-++. +.+..+|..++..|.-.|--.|++++|++.|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 88876542110 0000000 11112223344455555554 4555588888999999999999999999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001645 922 ERMRQEGCEP-TVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 922 ~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
+..+.. +| |..+||-|...++...+.++|+..|+++++..|. =+.++..|..+|...|.++||.+.|=+.+
T Consensus 454 ~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 454 EAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999975 56 6788999999999999999999999999997655 23455568889999999999999887754
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0035 Score=79.99 Aligned_cols=203 Identities=13% Similarity=-0.035 Sum_probs=113.8
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHH----cCCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCChhhH
Q 001645 690 YNMAIKTAGRGKDFKHMRNLFYEMRR----NGYL--I-TPDTWTIMMMQYGRAGLTEMAMRVFEDMKANG--CNPSGSTY 760 (1038)
Q Consensus 690 ~~~li~~~~~~~~~~~a~~l~~~m~~----~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~ 760 (1038)
+..+...+...|+++.|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+.....
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 613 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQ 613 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHH
Confidence 34455566778888888888876644 2211 1 22334455556677799999998888776531 11222222
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHCCC--CCCHH--H--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc----h
Q 001645 761 KYLIISLSGRKGRKVDHAIKIFQEMVNAGH--IPDKE--L--VETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPL----S 830 (1038)
Q Consensus 761 ~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~--~~d~~--~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~ 830 (1038)
.....+......|+.++|...+.+...... ..... . ....+..+...|+.+.|...+............ .
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 693 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQ 693 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHH
Confidence 222122222345688888888877654211 11110 0 011123445567788877776654432211111 1
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001645 831 YSLYIRALCRAGELEEALALLDEVKEE----RSKLD-EFVFGSLIHGLVQRGQIEEALAKVETMKQA 892 (1038)
Q Consensus 831 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 892 (1038)
+..+..++...|+.++|..++++.... |..++ ..++..+..++.+.|+.++|...+.+..+.
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345666777788888888888776653 22221 234555666677788888888888777653
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00015 Score=75.69 Aligned_cols=184 Identities=13% Similarity=0.081 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc---chHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH--HHHHH
Q 001645 794 KELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVP---LSYSLYIRALCRAGELEEALALLDEVKEERSKLDE--FVFGS 868 (1038)
Q Consensus 794 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ 868 (1038)
...+-.+...+.+.|++++|...++.+.+..+.++ .++..+...+...|++++|+..++++.+....... .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 44555666677777888888888887777766554 35667777888888888888888888764321111 13444
Q ss_pred HHHHHHhc--------CCHHHHHHHHHHHHHcCCCccH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 001645 869 LIHGLVQR--------GQIEEALAKVETMKQAGIYPTV-HVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTAL 939 (1038)
Q Consensus 869 li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~-~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 939 (1038)
+..++.+. |+.++|.+.|+.+.+. .|+. ..+..+..... ... ... .....+
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~~--------~~~~~~ 172 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RLA--------GKELYV 172 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HHH--------HHHHHH
Confidence 44445443 6677777777777654 2332 22222211100 000 000 011255
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 001645 940 IQGFANLGKVAEAWDVFYRMKIKGPF-P-DFRTYSMFIGCLCKVGKSEEALELLSEMTES 997 (1038)
Q Consensus 940 i~~~~~~g~~~~A~~~~~~m~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~ 997 (1038)
...|.+.|++.+|...+++..+..+. | ....+..++.+|.+.|++++|...++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66788999999999999999887543 2 4578889999999999999999998888753
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00014 Score=79.72 Aligned_cols=252 Identities=15% Similarity=0.101 Sum_probs=168.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHH
Q 001645 240 YGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAV 319 (1038)
Q Consensus 240 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 319 (1038)
+.+.|++.+|.-.|+...+.. +-+...|..|....+..++-..|+..+++..+.+.. |....-.|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 446666777777777666553 345566777777667777766777777766665432 455666666667777777777
Q ss_pred HHHHHHHHHcCCC--------CChhhHHHHHHHHHhcCCHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001645 320 LSIADDMVRISQI--------PERDAYGCVLKSFCVSMRIREALEFIRNL-KSKEISMDRDHFETLVKGLCIAGRISDAL 390 (1038)
Q Consensus 320 ~~~~~~m~~~~~~--------p~~~~~~~ll~~~~~~g~~~~A~~~~~~m-~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 390 (1038)
.+.++..+...+. ++...-.. +.+.....+....++|-++ ...+..+|+.++..|.-.|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 7777776553211 00000000 1222222333444454444 34454578888888888899999999999
Q ss_pred HHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHC-
Q 001645 391 EIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMA-STYTELMQHLFKLNEYKKGCELYNEMLKR- 468 (1038)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~l~~~m~~~- 468 (1038)
..|+......+.+..+||.|...++...+.++|+..|.+.++. +|+- .....|.-+|...|.+++|...|-..+..
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998875 5552 33444566788999999998888766542
Q ss_pred --------CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001645 469 --------GIQPDSVAVTAMVAGHVRQDNLSEAWKVF 497 (1038)
Q Consensus 469 --------g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 497 (1038)
+..++...|..|=.++...++.+-+....
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 12334567777777777777777555544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0049 Score=63.14 Aligned_cols=292 Identities=14% Similarity=0.095 Sum_probs=150.0
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHH---HHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 001645 692 MAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIM---MMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLS 768 (1038)
Q Consensus 692 ~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 768 (1038)
.+.+.+...+.+..|..-|....+. |+..|-++ ...|...|+..-|+.-|.+.++. +||-..... -.+..
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi-QRg~v 115 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI-QRGVV 115 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH-Hhchh
Confidence 3444455556666666666666554 33333332 34555666666666666666553 455433221 11222
Q ss_pred hhcCCChHHHHHHHHHHHHCCCCCCH--H------------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHH
Q 001645 769 GRKGRKVDHAIKIFQEMVNAGHIPDK--E------------LVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLY 834 (1038)
Q Consensus 769 ~~~~~~~~~A~~~~~~m~~~~~~~d~--~------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 834 (1038)
..+.|.+++|..-|+..++....... . .....+..+...|+...|+.....+++..+-+...|..-
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~R 195 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQAR 195 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHH
Confidence 22445666666666666654332111 0 111123333444666666666666666555454555555
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhh----HHHH------
Q 001645 835 IRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHV----YTSF------ 904 (1038)
Q Consensus 835 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----y~~l------ 904 (1038)
..+|...|++..|+.=+....+... -+..++--+-..+...|+.+.++...++..+. .||... |..|
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHH
Confidence 6666666666666665555544321 22333333444555666666666666655542 344321 1111
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHH---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001645 905 ---VVHFFREKQVGRALEIFERMRQEGCEPT--VVTYT---ALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIG 976 (1038)
Q Consensus 905 ---i~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 976 (1038)
+......+++.++++-.+...+. .|. .+.|+ .+-.+|...|++.+|++.-.++.+..+. |..++---..
T Consensus 273 les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAe 349 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHH
Confidence 11123345555555555555543 333 23332 2333444556677777777666665544 5666666666
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 001645 977 CLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 977 ~~~~~g~~~~A~~l~~~m~~ 996 (1038)
+|.-..++++|++=|+...+
T Consensus 350 A~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHh
Confidence 67666677777766666654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00028 Score=84.16 Aligned_cols=266 Identities=11% Similarity=0.021 Sum_probs=161.7
Q ss_pred CHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 001645 686 SSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLII 765 (1038)
Q Consensus 686 ~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 765 (1038)
+...+..++..+...+++++|..+.+...+..+. ....|-.+...+.+.++..++..+ .+.+. .+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~---------- 94 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLIDS--FS---------- 94 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhhh--cc----------
Confidence 3566677777777777777777777755554433 233333333355555555554444 22221 11
Q ss_pred HHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHh
Q 001645 766 SLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELE 845 (1038)
Q Consensus 766 ~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 845 (1038)
...++.....++..|...+ -+...+.++..||.+.|+.++|..+++.+++.++.++.+.|.+...|... +++
T Consensus 95 -----~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 95 -----QNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred -----cccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHH
Confidence 1113333333333333322 22346677888888888888888888888888888888888888888888 888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 846 EALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMR 925 (1038)
Q Consensus 846 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 925 (1038)
+|++++.+.... +...+++..+..+|.++.... |+- ++.-.++.+.+.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d---------------~d~f~~i~~ki~ 214 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDD---------------FDFFLRIERKVL 214 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--ccc---------------chHHHHHHHHHH
Confidence 888888777654 556667778888888877642 221 222223333333
Q ss_pred Hc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-HCCCCCCh
Q 001645 926 QE-GCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMT-ESGIVPSN 1003 (1038)
Q Consensus 926 ~~-g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~-~~g~~p~~ 1003 (1038)
.. |..--+.++--+-.-|....+++++..+++.+.+..+. |..+..-++.+|. +.+.. ...+++.. -.|+.-+.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~~~ 290 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGNNR 290 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH--HHccC-cchHHHHHHHhccccCC
Confidence 22 22334455555666777888899999999999998887 8888888888886 33333 34444433 23555554
Q ss_pred hcHHHHH
Q 001645 1004 INFRTIF 1010 (1038)
Q Consensus 1004 ~~~~~l~ 1010 (1038)
.++.--|
T Consensus 291 ~~~~~~i 297 (906)
T PRK14720 291 KPVKDCI 297 (906)
T ss_pred ccHHHHH
Confidence 4444333
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00014 Score=81.77 Aligned_cols=219 Identities=14% Similarity=0.117 Sum_probs=111.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHH
Q 001645 227 AKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIV 306 (1038)
Q Consensus 227 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 306 (1038)
+|--..-..+...+.+.|-...|+.+|+++. .|..++.+|+..|+..+|.++..+-.+ -+||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 3333444455566666677777777766654 555666666666666666666655555 24555556555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 001645 307 MNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRI 386 (1038)
Q Consensus 307 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 386 (1038)
.+.....--++.|.++++.... + .-..+.......+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sa-----------------------------------r-------A~r~~~~~~~~~~~f 501 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISA-----------------------------------R-------AQRSLALLILSNKDF 501 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhH-----------------------------------H-------HHHhhccccccchhH
Confidence 5554333334445444443211 1 111111111224455
Q ss_pred HHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 001645 387 SDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPM-ASTYTELMQHLFKLNEYKKGCELYNEM 465 (1038)
Q Consensus 387 ~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~l~~~m 465 (1038)
+++.+.|+.-.+.++....+|.....+..+.+++..|.+.|..-... .|| ...||.+-.+|.+.++..+|...+.+.
T Consensus 502 s~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EA 579 (777)
T KOG1128|consen 502 SEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEA 579 (777)
T ss_pred HHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHH
Confidence 55555555555555444445555555555555555555555544432 232 344555555555555555555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 466 LKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCME 501 (1038)
Q Consensus 466 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 501 (1038)
++.. .-+...|...+....+.|.+++|.+.+.++.
T Consensus 580 lKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 580 LKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred hhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 5544 2233444444444555555555555555544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.015 Score=63.63 Aligned_cols=218 Identities=15% Similarity=0.123 Sum_probs=151.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCC-CCcchHHHHHHHHHHcCCHhHHHHH
Q 001645 775 VDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVG---MLQLAKSCMDVLRKVGF-TVPLSYSLYIRALCRAGELEEALAL 850 (1038)
Q Consensus 775 ~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~ 850 (1038)
.+++..+++..+..-...+..+|..+.+---..- ..+.....++.+...-. ....+|-.+++.-.+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 4566666666555433334444444433221111 24455566666655443 3457899999999999999999999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001645 851 LDEVKEERSKL-DEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGC 929 (1038)
Q Consensus 851 ~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~ 929 (1038)
|.++.+.+..+ ++..+++++.-||. ++.+-|.++|+.=.+. +.-+..--...++-+...|+=..|..+|++.+..++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99999998888 77778888877764 7788999999875543 223333445677888889999999999999998877
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001645 930 EPT--VVTYTALIQGFANLGKVAEAWDVFYRMKIKGP---FPDFRTYSMFIGCLCKVGKSEEALELLSEM 994 (1038)
Q Consensus 930 ~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m 994 (1038)
.|| ...|..++.--...|++..+.++-+++...-+ .+....-..+++-|.-.+.+..-..-++.|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 765 57899999999999999999999888765422 222233446777787777765544444444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.025 Score=65.71 Aligned_cols=116 Identities=13% Similarity=0.055 Sum_probs=81.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH
Q 001645 206 GEAKELELLEELEREMEINSCAKNIKTWTILVSL--YGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDI 283 (1038)
Q Consensus 206 ~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 283 (1038)
...++|..|.+....+.+. .|+.. |..++.+ ..+.|+.++|..+++.....+.. |..|...+-..|-..++.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3567888888888888765 24432 2333333 35788888888888877766533 77888888888888888888
Q ss_pred HHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 001645 284 ALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMV 327 (1038)
Q Consensus 284 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 327 (1038)
|..+|+...+. .|+......+..+|.+.+++.+-.++--+|-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~Ly 137 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLY 137 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888664 4667777777788888887765444433333
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.8e-05 Score=84.62 Aligned_cols=223 Identities=15% Similarity=0.124 Sum_probs=160.9
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHH
Q 001645 772 GRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALL 851 (1038)
Q Consensus 772 ~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 851 (1038)
.|-..+|..++++ ...+...+.||+..|+.++|..+.....+ .++++..|..+.+.....--+++|.+++
T Consensus 411 lGitksAl~I~Er---------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawEls 480 (777)
T KOG1128|consen 411 LGITKSALVIFER---------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELS 480 (777)
T ss_pred cchHHHHHHHHHh---------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHh
Confidence 3466677776664 45677778888888888888887777777 5556677777777666666677777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001645 852 DEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEP 931 (1038)
Q Consensus 852 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 931 (1038)
+..... .-..+..-....++++++.+.|+.-.+.+ +.-..+|-.+.-+..+.+++..|.+.|..... ..|
T Consensus 481 n~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~P 550 (777)
T KOG1128|consen 481 NYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEP 550 (777)
T ss_pred hhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCC
Confidence 665432 11122222334688888888888766543 44567788888888889999999999998886 367
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCChhcHHHH
Q 001645 932 T-VVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGI-VPSNINFRTI 1009 (1038)
Q Consensus 932 d-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~~~~~l 1009 (1038)
| ...||++-.+|.+.|+-.+|...+.+..+-+.. +...|-..+....+-|.|++|++.+.+|.+-.. .-|......+
T Consensus 551 d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~i 629 (777)
T KOG1128|consen 551 DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLII 629 (777)
T ss_pred CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHH
Confidence 5 567999999999999999999999999888744 778888888999999999999999998874211 1255555555
Q ss_pred HHHHhc
Q 001645 1010 FFGLNR 1015 (1038)
Q Consensus 1010 ~~~~~~ 1015 (1038)
+....+
T Consensus 630 v~~~~~ 635 (777)
T KOG1128|consen 630 VRTVLE 635 (777)
T ss_pred HHHHHh
Confidence 555443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0058 Score=62.63 Aligned_cols=313 Identities=13% Similarity=0.028 Sum_probs=181.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHc
Q 001645 199 NTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVA-YKVLVRSLCN 277 (1038)
Q Consensus 199 ~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~ 277 (1038)
--+-..+...|++..|+.-|....+.+ |.+-.++-.-...|...|+-.-|+.-|.+..+. +||-.. --.-...+.+
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 344555667788888888888777432 333334444455777888888888888888766 677432 2222345678
Q ss_pred CCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 001645 278 AGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEF 357 (1038)
Q Consensus 278 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 357 (1038)
.|.++.|..=|+.+.+....-+. ...++.+.--.++ .......+..+.-.|+...|++.
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~-----~~eaqskl~~~~e----------------~~~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGL-----VLEAQSKLALIQE----------------HWVLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcch-----hHHHHHHHHhHHH----------------HHHHHHHHHHHhcCCchhhHHHH
Confidence 88888888888888776432110 0111111110111 11122333444455666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 001645 358 IRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLP 437 (1038)
Q Consensus 358 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 437 (1038)
+..+.+..+. |...|..-..+|...|++..|..=++...+....+...+.-+-..+.+.|+.+.++...++-.+. .|
T Consensus 178 i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dp 254 (504)
T KOG0624|consen 178 ITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DP 254 (504)
T ss_pred HHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Cc
Confidence 6665554433 55556666666666666666665555555544444445555555555666666666555555443 23
Q ss_pred CHHH----HHHH---------HHHHHhcCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 438 MAST----YTEL---------MQHLFKLNEYKKGCELYNEMLKRGIQPDSVA---VTAMVAGHVRQDNLSEAWKVFKCME 501 (1038)
Q Consensus 438 ~~~t----~~~l---------l~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~ 501 (1038)
|... |..| +......+++.++.+-.+..++....-.... +..+-.+|...|++.+|++.-.+..
T Consensus 255 dHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 255 DHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence 3211 1111 1122345667777777777777643322233 3445556667788889988888877
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001645 502 DKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASK 539 (1038)
Q Consensus 502 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 539 (1038)
+-.. .|+.++.--..+|.-...++.|+.-|+...+.+
T Consensus 335 ~~d~-~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 335 DIDP-DDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred hcCc-hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 6531 246777777778888888899988888877653
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00071 Score=81.19 Aligned_cols=175 Identities=10% Similarity=0.074 Sum_probs=97.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHH
Q 001645 349 MRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFE 428 (1038)
Q Consensus 349 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 428 (1038)
|.-+...++|++..+.- . ....|..|...|.+.+.+++|-++++.|.++-.....+|...+..+.+.++-+.|..++.
T Consensus 1511 G~eesl~kVFeRAcqyc-d-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~ 1588 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYC-D-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLK 1588 (1710)
T ss_pred CcHHHHHHHHHHHHHhc-c-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 44444444444443321 1 133555566666666666666666666655544444556666666666666666666666
Q ss_pred HHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 001645 429 RMKESGYL-PMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRP 507 (1038)
Q Consensus 429 ~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 507 (1038)
+..+.=.+ -........+..-.+.|+.+.+..+|+..+..- +-....|+..+++-.+.|+.+.+..+|++....++.|
T Consensus 1589 rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1589 RALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 55543111 122333344444456677777777777766652 2245667777777777777777777777777766654
Q ss_pred CH--HHHHHHHHHHHhcCCHH
Q 001645 508 TR--KSYSVFIKELCRVSRTN 526 (1038)
Q Consensus 508 ~~--~~~~~li~~~~~~g~~~ 526 (1038)
-. ..|...+..=-..|+-.
T Consensus 1668 kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1668 KKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred hHhHHHHHHHHHHHHhcCchh
Confidence 33 23444444333344433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00015 Score=68.38 Aligned_cols=103 Identities=10% Similarity=-0.047 Sum_probs=51.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 001645 868 SLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLG 947 (1038)
Q Consensus 868 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g 947 (1038)
.+...+...|++++|...|+...... +.+...|..+..++.+.|++++|+..|++..+.. +.+...+..+..++.+.|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 34444455555555555555554432 3344455555555555555555555555555431 224445555555555555
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 001645 948 KVAEAWDVFYRMKIKGPFPDFRTYSM 973 (1038)
Q Consensus 948 ~~~~A~~~~~~m~~~~~~~~~~~~~~ 973 (1038)
++++|...|++..+..+. ++..|..
T Consensus 107 ~~~eAi~~~~~Al~~~p~-~~~~~~~ 131 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYA-DASWSEI 131 (144)
T ss_pred CHHHHHHHHHHHHHhCCC-ChHHHHH
Confidence 555555555555554444 4444433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0015 Score=64.28 Aligned_cols=172 Identities=17% Similarity=0.192 Sum_probs=132.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 001645 796 LVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQ 875 (1038)
Q Consensus 796 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 875 (1038)
+|..+.-+...+|+.+.|..+++.+..+.+.+...-..-..-+-..|++++|+++++.+.+.. +.|.+++---+...-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 344555566778999999999999998886665443334445566899999999999999874 5577778777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC---CHHH
Q 001645 876 RGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEP-TVVTYTALIQGFANLG---KVAE 951 (1038)
Q Consensus 876 ~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g---~~~~ 951 (1038)
.|+.-+|++-+....+. +..|...|.-|...|...|++++|.-.++++.-. .| ++..+..+...+.-.| +.+-
T Consensus 133 ~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred cCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 88888898888887765 6789999999999999999999999999999864 45 5555566666665554 5778
Q ss_pred HHHHHHHHHHcCCCCCHHHHH
Q 001645 952 AWDVFYRMKIKGPFPDFRTYS 972 (1038)
Q Consensus 952 A~~~~~~m~~~~~~~~~~~~~ 972 (1038)
|.+.|.+..+..+. +...+.
T Consensus 210 arkyy~~alkl~~~-~~ral~ 229 (289)
T KOG3060|consen 210 ARKYYERALKLNPK-NLRALF 229 (289)
T ss_pred HHHHHHHHHHhChH-hHHHHH
Confidence 99999999887664 444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00037 Score=69.25 Aligned_cols=158 Identities=13% Similarity=0.020 Sum_probs=75.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 001645 798 ETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRG 877 (1038)
Q Consensus 798 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 877 (1038)
..+-..+...|+-+....+........+.+......++....+.|++.+|+..|.+.... -++|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHcc
Confidence 334444444555555555544444444444334444555555555555555555555443 3444555555555555555
Q ss_pred CHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001645 878 QIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFY 957 (1038)
Q Consensus 878 ~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~ 957 (1038)
+.++|..-|.+..+.- +-+...+|.|.-.|.-.|+++.|..++.+....+ .-|..+-..|.......|++++|.++..
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 5555555555544421 2223334444444444555555555555544432 2244444444445555555555555444
Q ss_pred H
Q 001645 958 R 958 (1038)
Q Consensus 958 ~ 958 (1038)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00064 Score=80.66 Aligned_cols=246 Identities=17% Similarity=0.100 Sum_probs=166.8
Q ss_pred ChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH---HHHHHcCCCCcchHH
Q 001645 756 SGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCM---DVLRKVGFTVPLSYS 832 (1038)
Q Consensus 756 ~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~---~~~~~~~~~~~~~~~ 832 (1038)
...+...++.......+..-+...+++.++.+ .....|.++.+...+ ..+...-+.++..+-
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (694)
T PRK15179 26 SGPTILDLLEAALAEPGESEEAGRELLQQARQ---------------VLERHAAVHKPAAALPELLDYVRRYPHTELFQV 90 (694)
T ss_pred CCcHHHhHHHHHhcCcccchhHHHHHHHHHHH---------------HHHHhhhhcchHhhHHHHHHHHHhccccHHHHH
Confidence 34455555555554344333444555555433 233344444433333 334444455567888
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhc
Q 001645 833 LYIRALCRAGELEEALALLDEVKEERSKLDE-FVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFRE 911 (1038)
Q Consensus 833 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~ 911 (1038)
.|.....+.|.+++|..+++...+. .||. .....+...+.+.+++++|+...++..... +-+......+..++.+.
T Consensus 91 ~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 91 LVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999984 5654 466778889999999999999999998764 45567777888899999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 001645 912 KQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELL 991 (1038)
Q Consensus 912 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~ 991 (1038)
|++++|..+|+++...+ +-+..++..+..++.+.|+.++|...|++..+..-. ....|+.++ ++...-..++
T Consensus 168 g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~-~~~~~~~~~------~~~~~~~~~~ 239 (694)
T PRK15179 168 GQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD-GARKLTRRL------VDLNADLAAL 239 (694)
T ss_pred cchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc-chHHHHHHH------HHHHHHHHHH
Confidence 99999999999999742 234788888999999999999999999999876322 445555543 3334445566
Q ss_pred HHHHHC----CCCCChhcHHHHHHHHhccCCh--hhhhcCCc
Q 001645 992 SEMTES----GIVPSNINFRTIFFGLNREDNL--YQITKRPF 1027 (1038)
Q Consensus 992 ~~m~~~----g~~p~~~~~~~l~~~~~~~g~~--~~~~~~~~ 1027 (1038)
+++.-. |..-..+....+|..+.+.-.. ++....|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (694)
T PRK15179 240 RRLGVEGDGRDVPVSILVLEKMLQEIGRRRNAEYDAGPESFV 281 (694)
T ss_pred HHcCcccccCCCceeeeeHHHHHHHHhhcCcccccCCCCCCc
Confidence 666422 3333567777777777554433 33444443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.025 Score=61.85 Aligned_cols=121 Identities=15% Similarity=0.150 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001645 899 HVYTSFVVHFFREKQVGRALEIFERMRQEGCEP-TVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGC 977 (1038)
Q Consensus 899 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 977 (1038)
.+|..+++.-.+..-++.|..+|.++.+.+..+ +++++++++.-|| .++.+-|.++|+.=..+-.. ++.--...++-
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d-~p~yv~~Yldf 444 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD-SPEYVLKYLDF 444 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 345566666666666666666666666655555 5556666665443 35566666666654443222 34444455666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC--hhcHHHHHHHHhccCChhh
Q 001645 978 LCKVGKSEEALELLSEMTESGIVPS--NINFRTIFFGLNREDNLYQ 1021 (1038)
Q Consensus 978 ~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~ 1021 (1038)
+.+.|+-..|..+|++....++.|+ ...|..++.-=..-|++.-
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 6666666666666666665544443 3556666655455555544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00021 Score=70.92 Aligned_cols=152 Identities=13% Similarity=0.113 Sum_probs=74.3
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCH
Q 001645 835 IRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQV 914 (1038)
Q Consensus 835 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~ 914 (1038)
-..+.-.|+-+.+..+....... ...|....+..+....+.|++.+|...|++..... ++|-..|+.+.-+|.+.|++
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccCh
Confidence 34444445555544444443322 12233333444555555555555555555554432 44555555555555555555
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 001645 915 GRALEIFERMRQEGCEP-TVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELL 991 (1038)
Q Consensus 915 ~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~ 991 (1038)
++|..-|.+..+- .| +...++.|.-.|.-.|+.+.|..++.+....+.. |..+-..+.-+....|++.+|..+.
T Consensus 151 ~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 151 DEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 5555555555542 22 3344445555555555555555555555544433 4444444555555555555555544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0011 Score=65.71 Aligned_cols=151 Identities=19% Similarity=0.195 Sum_probs=102.8
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHh----
Q 001645 835 IRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFR---- 910 (1038)
Q Consensus 835 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~---- 910 (1038)
...|++.|++++|++...... +......=+..+.+..+.+-|.+.+++|++. -+-.|.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhcc
Confidence 345677788888887776621 2222222244456667788888888888763 355566666666654
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH-H
Q 001645 911 EKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEAL-E 989 (1038)
Q Consensus 911 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~ 989 (1038)
.+.+.+|.-+|++|-++ ..|+..+.+-...++...|++++|..+++....+..+ ++.+...++.+-...|...++. +
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHH
Confidence 33577888888888764 5788888888888888888888888888888888777 7777777777777777764443 3
Q ss_pred HHHHHHH
Q 001645 990 LLSEMTE 996 (1038)
Q Consensus 990 l~~~m~~ 996 (1038)
.+..++.
T Consensus 264 ~l~QLk~ 270 (299)
T KOG3081|consen 264 NLSQLKL 270 (299)
T ss_pred HHHHHHh
Confidence 4555543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0011 Score=78.64 Aligned_cols=238 Identities=11% Similarity=0.042 Sum_probs=168.9
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHHcCCCCChhhHHHHHHHHHhhcCCChHHHHHHHHHHH--HCCCCC
Q 001645 716 NGYLITPDTWTIMMMQYGRAGLTEMAM-RVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMV--NAGHIP 792 (1038)
Q Consensus 716 ~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~--~~~~~~ 792 (1038)
.|+..++.....+=.+.+.-|..++|- +++.+..+ ++.... .+..+..-+-++. ...+..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 84 (694)
T PRK15179 22 GGPASGPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHA-----AVHKPAAALPELLDYVRRYPH 84 (694)
T ss_pred CCCCCCcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhh-----hhcchHhhHHHHHHHHHhccc
Confidence 345556666666666677778777764 45555543 222211 2222222222221 123455
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 001645 793 DKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLD-EFVFGSLIH 871 (1038)
Q Consensus 793 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~ 871 (1038)
+...+..|.....+.|++++|..+++.+.+..|.....+..+...+.+.+++++|+..+++.... .|+ ......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHH
Confidence 68888999999999999999999999999999999999999999999999999999999999985 454 556677788
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 001645 872 GLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAE 951 (1038)
Q Consensus 872 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~ 951 (1038)
++.+.|++++|..+|++....+ +-+..++.++..++-..|+.++|...|++..+. ..|...-|+.++ +++..
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~~~~~ 234 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------VDLNA 234 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------HHHHH
Confidence 8889999999999999999743 455889999999999999999999999999875 245555555443 33444
Q ss_pred HHHHHHHHHHc----CCCCCHHHHHHHHHHHHh
Q 001645 952 AWDVFYRMKIK----GPFPDFRTYSMFIGCLCK 980 (1038)
Q Consensus 952 A~~~~~~m~~~----~~~~~~~~~~~l~~~~~~ 980 (1038)
-..+++++--. |......+..+++.-|..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 235 DLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred HHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 55556655322 222233445555555544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=9.4e-05 Score=69.82 Aligned_cols=116 Identities=12% Similarity=0.046 Sum_probs=96.4
Q ss_pred HHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001645 884 AKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKG 963 (1038)
Q Consensus 884 ~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 963 (1038)
.++++..+. .|+. +..+...+...|++++|...|+...... +.+...|..+..++.+.|++++|...|++..+..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345555442 4553 5567888899999999999999998763 4478889999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhcHH
Q 001645 964 PFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFR 1007 (1038)
Q Consensus 964 ~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 1007 (1038)
+. ++..+..+..+|...|++++|++.++...+ +.|+...+.
T Consensus 89 p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~~~~ 129 (144)
T PRK15359 89 AS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADASWS 129 (144)
T ss_pred CC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHH
Confidence 87 899999999999999999999999999986 457554443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00047 Score=71.88 Aligned_cols=184 Identities=11% Similarity=0.042 Sum_probs=126.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh---hHHH
Q 001645 335 RDAYGCVLKSFCVSMRIREALEFIRNLKSKEIS-M-DRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGK---IYGI 409 (1038)
Q Consensus 335 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~ 409 (1038)
...+..+...+...|++++|...++++....+. | ....+..+...|...|++++|...++++.+..+.+.. ++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 345777778888899999999999988776543 1 1246677888889999999999999999887776443 4555
Q ss_pred HHHHHhcc--------CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 001645 410 IIGGYLRK--------NDLSKALVQFERMKESGYLPMA-STYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAM 480 (1038)
Q Consensus 410 li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~l 480 (1038)
+...+... |++++|.+.|+.+.... |+. ..+..+... .. . .... ......+
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~-~~---~------~~~~--------~~~~~~~ 172 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM-DY---L------RNRL--------AGKELYV 172 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH-HH---H------HHHH--------HHHHHHH
Confidence 55666554 67888888888887653 332 222211111 00 0 0000 0112245
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001645 481 VAGHVRQDNLSEAWKVFKCMEDKGI--RPTRKSYSVFIKELCRVSRTNEILKVLNNMQAS 538 (1038)
Q Consensus 481 i~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (1038)
...|.+.|++.+|...++....... +.....+..+..++...|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6678899999999999999887631 123568889999999999999999999888654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00015 Score=67.96 Aligned_cols=107 Identities=21% Similarity=0.269 Sum_probs=77.2
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001645 897 TVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIG 976 (1038)
Q Consensus 897 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 976 (1038)
+......+...+...|++++|.+.|+.+.+.+ +.+...|..+...|.+.|++++|..++++..+.++. +...+..+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHH
Confidence 33445566677777788888888888777653 346677777777888888888888888887777655 6777777888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhcHH
Q 001645 977 CLCKVGKSEEALELLSEMTESGIVPSNINFR 1007 (1038)
Q Consensus 977 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 1007 (1038)
+|...|++++|.+.+++..+ ..|+...+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~--~~p~~~~~~ 122 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIE--ICGENPEYS 122 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHH--hccccchHH
Confidence 88888888888888887776 345554433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00086 Score=67.05 Aligned_cols=122 Identities=12% Similarity=0.094 Sum_probs=93.3
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHH-HhcCC--HHHH
Q 001645 841 AGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHF-FREKQ--VGRA 917 (1038)
Q Consensus 841 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~-~~~g~--~~~A 917 (1038)
.++.++++..++...+. .+.|...|..+...|...|++++|...|++..+.. +-+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 56677777777777765 35567788888888888888888888888888754 44667777777764 66676 4888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001645 918 LEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 918 ~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 965 (1038)
.+++++.++.. +-+...+..+...+.+.|++++|+..|+++.+..+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 88888888753 336677788888888889999999999988887555
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.081 Score=61.75 Aligned_cols=161 Identities=16% Similarity=0.103 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHcCCHh---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHH
Q 001645 830 SYSLYIRALCRAGELE---EALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVV 906 (1038)
Q Consensus 830 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~ 906 (1038)
+-+.|++.+.+.++.. +|+-+++..... .+-|..+--.+|+.|+-.|-...|..+|..|.-.+|+-|..-|-. ..
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~ 515 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FR 515 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HH
Confidence 4578888898888754 566666665553 234555667788999999999999999999887777777766554 34
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH---HHHHHcCCCCCHHHHHHHHHHHHhc
Q 001645 907 HFFREKQVGRALEIFERMRQEG--CEPTVVTYTALIQGFANLGKVAEAWDVF---YRMKIKGPFPDFRTYSMFIGCLCKV 981 (1038)
Q Consensus 907 ~~~~~g~~~~A~~~~~~m~~~g--~~pd~~~~~~li~~~~~~g~~~~A~~~~---~~m~~~~~~~~~~~~~~l~~~~~~~ 981 (1038)
.+.-.|++..+...++....-- -.-+..-| +..|| +.|.+++-.++. +++.......-..+-+..++.++..
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~ey--I~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~ 592 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKFYDSSLKETPEY--IALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNA 592 (932)
T ss_pred HHHhcccchhHHHHHHHHHHHHhhhhhhhHHH--HHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4556677777777777655320 01122222 23344 556666555543 3333322222344566777888888
Q ss_pred CChHHHHHHHHHHH
Q 001645 982 GKSEEALELLSEMT 995 (1038)
Q Consensus 982 g~~~~A~~l~~~m~ 995 (1038)
++.++=...++.|.
T Consensus 593 ~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 593 DRGTQLLKLLESMK 606 (932)
T ss_pred CcHHHHHHHHhccc
Confidence 98888888888876
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0048 Score=74.05 Aligned_cols=56 Identities=5% Similarity=0.033 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001645 338 YGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDI 395 (1038)
Q Consensus 338 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 395 (1038)
+..+..+|-+.|+.++|..+|+++.+..+. |+.+.|.+...|... ++++|++.+.+
T Consensus 119 l~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 119 LRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 344444444445555555555555444432 444555555555555 55555554433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0014 Score=70.85 Aligned_cols=136 Identities=16% Similarity=0.129 Sum_probs=80.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 001645 806 EVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLD-EFVFGSLIHGLVQRGQIEEALA 884 (1038)
Q Consensus 806 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~ 884 (1038)
..|.+++|+..++.+....|.++..+......+.+.++..+|.+.++++... .|+ ...+-++..+|.+.|++.+|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHH
Confidence 3455555555555555555555555666666666666666666666666653 344 4445555666666666666666
Q ss_pred HHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001645 885 KVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIK 962 (1038)
Q Consensus 885 ~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 962 (1038)
+++...... +-|...|..|..+|...|+..+|..-.. .+|.-.|++++|...+....+.
T Consensus 396 ~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 396 ILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 666655442 5566666666666666666555544322 2344556666666666666554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00065 Score=74.44 Aligned_cols=121 Identities=17% Similarity=0.220 Sum_probs=76.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 001645 869 LIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGK 948 (1038)
Q Consensus 869 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~ 948 (1038)
++..+...++++.|..+|+++.+.. |+. ...|+..+...++-.+|.+++++.++.. +-|...+..-...|.+.|+
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 3344444555666666666665442 332 2335555555666666666666666531 2345555555666777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001645 949 VAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 949 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
++.|+++.+++.+..|. +..+|..|+.+|.+.|++++|+..++.+.
T Consensus 250 ~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777777666 77777777777777777777777777664
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00082 Score=62.98 Aligned_cols=92 Identities=14% Similarity=0.092 Sum_probs=40.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 001645 869 LIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGK 948 (1038)
Q Consensus 869 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~ 948 (1038)
+...+...|++++|...|+.+...+ +.+...|..+...|.+.|++++|..+++...+.+ +.+...+..+...|...|+
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCC
Confidence 3334444444444444444444322 2233444444444444444444444444444331 2233444444444444455
Q ss_pred HHHHHHHHHHHHHc
Q 001645 949 VAEAWDVFYRMKIK 962 (1038)
Q Consensus 949 ~~~A~~~~~~m~~~ 962 (1038)
+++|.+.|++..+.
T Consensus 101 ~~~A~~~~~~al~~ 114 (135)
T TIGR02552 101 PESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555444444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.75 E-value=4.7e-05 Score=51.73 Aligned_cols=33 Identities=58% Similarity=0.928 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 001645 970 TYSMFIGCLCKVGKSEEALELLSEMTESGIVPS 1002 (1038)
Q Consensus 970 ~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~ 1002 (1038)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.02 Score=57.21 Aligned_cols=120 Identities=13% Similarity=0.123 Sum_probs=58.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHH----hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 001645 380 LCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGY----LRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEY 455 (1038)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 455 (1038)
+.+..++|-|...++.|.+.+-. .+.+-|..++ ...+.+..|.-+|++|.++ ..|+..+.+-...++...+++
T Consensus 147 ~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH
Confidence 44455555555555555543322 2222222222 2233455666666666543 355666666666666666666
Q ss_pred hHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001645 456 KKGCELYNEMLKRGIQPDSVAV-TAMVAGHVRQDNLSEAWKVFKCMEDK 503 (1038)
Q Consensus 456 ~~a~~l~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~ 503 (1038)
++|..++++.+..... +..+. |.++.+.....+.+...+.+..+...
T Consensus 224 eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 224 EEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 6666666666665433 23333 33333333333344444555555443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.72 E-value=5.2e-05 Score=51.48 Aligned_cols=32 Identities=31% Similarity=0.627 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001645 901 YTSFVVHFFREKQVGRALEIFERMRQEGCEPT 932 (1038)
Q Consensus 901 y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 932 (1038)
||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 44444444444444444444444444444443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0025 Score=60.38 Aligned_cols=125 Identities=13% Similarity=0.119 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHH
Q 001645 866 FGSLIHGLVQRGQIEEALAKVETMKQAGIYPT---VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPT--VVTYTALI 940 (1038)
Q Consensus 866 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~~~~~li 940 (1038)
|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+...+....|+ ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33344444 4778888888888887642 222 34444566788889999999999999988652232 22444567
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001645 941 QGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEM 994 (1038)
Q Consensus 941 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m 994 (1038)
..+...|++++|+..++...... ..+..+....++|.+.|++++|...|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 78888999999999997754332 25567788899999999999999988753
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0001 Score=49.67 Aligned_cols=33 Identities=36% Similarity=0.706 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 001645 969 RTYSMFIGCLCKVGKSEEALELLSEMTESGIVP 1001 (1038)
Q Consensus 969 ~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p 1001 (1038)
.+|+.++.+|++.|+++.|.+++++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.032 Score=55.32 Aligned_cols=84 Identities=13% Similarity=0.227 Sum_probs=35.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 001645 383 AGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELY 462 (1038)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~ 462 (1038)
.|.+++|.++++.+.+.++.+..++---+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|+++.|.-.+
T Consensus 99 ~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 344444444444444444444444433333333334433444444333332 2234444444444444444444444444
Q ss_pred HHHHH
Q 001645 463 NEMLK 467 (1038)
Q Consensus 463 ~~m~~ 467 (1038)
++++-
T Consensus 178 EE~ll 182 (289)
T KOG3060|consen 178 EELLL 182 (289)
T ss_pred HHHHH
Confidence 44443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00011 Score=49.43 Aligned_cols=31 Identities=19% Similarity=0.503 Sum_probs=13.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001645 900 VYTSFVVHFFREKQVGRALEIFERMRQEGCE 930 (1038)
Q Consensus 900 ~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 930 (1038)
+|++++.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444433
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.002 Score=61.07 Aligned_cols=115 Identities=19% Similarity=0.196 Sum_probs=54.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCc---chHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHH
Q 001645 807 VGMLQLAKSCMDVLRKVGFTVP---LSYSLYIRALCRAGELEEALALLDEVKEERSKLDE--FVFGSLIHGLVQRGQIEE 881 (1038)
Q Consensus 807 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~ 881 (1038)
.++...+...++.+.+..+..+ ...-.+...+...|++++|...|+........|+. ...-.+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555555554442 22333445555566666666666666654322211 122234444555555555
Q ss_pred HHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001645 882 ALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFER 923 (1038)
Q Consensus 882 A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~ 923 (1038)
|+..++...... .....+....+.|.+.|+.++|...|++
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555554432221 2223344445555555555555555543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0011 Score=72.85 Aligned_cols=119 Identities=13% Similarity=0.190 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 001645 860 KLDEFVFGSLIHGLVQRGQIEEALAKVETMKQA--GIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYT 937 (1038)
Q Consensus 860 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~ 937 (1038)
+-+......+++.+....+++++..++.+.... ....-..|..++|+.|.+.|..+++++++..=..-|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334444444555555555555555554444431 111111222355555555555555555555544455555555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001645 938 ALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCL 978 (1038)
Q Consensus 938 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 978 (1038)
.|++.+.+.|++..|.+++-.|...+...++.|+..-+.+|
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 55555555555555555555544443333444444333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0018 Score=55.80 Aligned_cols=94 Identities=23% Similarity=0.287 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 001645 901 YTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCK 980 (1038)
Q Consensus 901 y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 980 (1038)
|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++......+. +..++..++.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 4456666777777888888887776642 233456666777777778888888888887776655 55677777788888
Q ss_pred cCChHHHHHHHHHHHH
Q 001645 981 VGKSEEALELLSEMTE 996 (1038)
Q Consensus 981 ~g~~~~A~~l~~~m~~ 996 (1038)
.|++++|...+.+..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 8888888888777654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00037 Score=58.85 Aligned_cols=81 Identities=23% Similarity=0.344 Sum_probs=54.6
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 001645 911 EKQVGRALEIFERMRQEGC-EPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALE 989 (1038)
Q Consensus 911 ~g~~~~A~~~~~~m~~~g~-~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 989 (1038)
.|+++.|+.+++++.+... .|+...+..+..+|.+.|++++|..++++ .+.++. +......++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 4677888888888877532 12444555578888888888888888877 333333 34555566888888888888888
Q ss_pred HHHH
Q 001645 990 LLSE 993 (1038)
Q Consensus 990 l~~~ 993 (1038)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8765
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0046 Score=67.93 Aligned_cols=90 Identities=13% Similarity=0.159 Sum_probs=47.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCH
Q 001645 341 VLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDL 420 (1038)
Q Consensus 341 ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 420 (1038)
+++.+...++..+|.+++.+..+.... +........+.|.+.++++.|+.+.+++....+.+-.+|..|...|.+.|++
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~ 284 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDF 284 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCH
Confidence 333344444444555555444433222 3444444455555666666666666666665555555566666666666666
Q ss_pred HHHHHHHHHHH
Q 001645 421 SKALVQFERMK 431 (1038)
Q Consensus 421 ~~A~~~~~~m~ 431 (1038)
+.|+..+..+.
T Consensus 285 e~ALlaLNs~P 295 (395)
T PF09295_consen 285 ENALLALNSCP 295 (395)
T ss_pred HHHHHHHhcCc
Confidence 66665555443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0022 Score=70.65 Aligned_cols=122 Identities=18% Similarity=0.183 Sum_probs=70.6
Q ss_pred CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 001645 400 NLVDGKIYGIIIGGYLRKNDLSKALVQFERMKES--GYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAV 477 (1038)
Q Consensus 400 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~ 477 (1038)
.+++......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..+.+.+++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3444445555666666666666666666665544 22222344456666666666666666666666666666666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 001645 478 TAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCR 521 (1038)
Q Consensus 478 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 521 (1038)
|.||+.+.+.|++..|.++...|...+...+..|+..-+.+|.+
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666666666666655554455554444444333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0022 Score=54.90 Aligned_cols=74 Identities=14% Similarity=0.261 Sum_probs=37.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHcCC--------ChhHHHHHHHHHHhCCCcCCHHHHHHHH
Q 001645 237 VSLYGKAKLIGKALLVFEKMRKYGF-EPDAVAYKVLVRSLCNAG--------KGDIALEFYKEMAQKEMVLDLSLYKIVM 307 (1038)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~~li 307 (1038)
|..+...+++..-..+|+.+++.|+ -|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3333334555555555555555554 455555555555444432 1223445566666666666666666665
Q ss_pred HHH
Q 001645 308 NCA 310 (1038)
Q Consensus 308 ~~~ 310 (1038)
..+
T Consensus 112 ~~L 114 (120)
T PF08579_consen 112 GSL 114 (120)
T ss_pred HHH
Confidence 554
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00023 Score=46.69 Aligned_cols=30 Identities=53% Similarity=0.877 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 001645 970 TYSMFIGCLCKVGKSEEALELLSEMTESGI 999 (1038)
Q Consensus 970 ~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~ 999 (1038)
+|+.++++|++.|++++|.+++++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 566666666666666666666666665553
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0072 Score=54.93 Aligned_cols=94 Identities=18% Similarity=0.188 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHH
Q 001645 901 YTSFVVHFFREKQVGRALEIFERMRQEGCEPT----VVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFP--DFRTYSMF 974 (1038)
Q Consensus 901 y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~l 974 (1038)
+..++..+.+.|++++|.+.|+++.+. .|+ ...+..+...+.+.|++++|.+.++.+....+.. ...++..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 334444445555555555555555443 121 2233445555555555555555555555433221 13344555
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 001645 975 IGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 975 ~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
..++.+.|++++|.+.++++.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHH
Confidence 5555555555555555555554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00031 Score=46.03 Aligned_cols=25 Identities=36% Similarity=0.689 Sum_probs=9.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 901 YTSFVVHFFREKQVGRALEIFERMR 925 (1038)
Q Consensus 901 y~~li~~~~~~g~~~~A~~~~~~m~ 925 (1038)
||+++++|++.|++++|.++|++|.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3333333333333333333333333
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0045 Score=68.39 Aligned_cols=99 Identities=9% Similarity=-0.039 Sum_probs=62.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 001645 870 IHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKV 949 (1038)
Q Consensus 870 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 949 (1038)
...+...|++++|+..|++..+.. +-+...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 344556677777777777766543 3455566666667777777777777777776542 22455666666667777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHH
Q 001645 950 AEAWDVFYRMKIKGPFPDFRTY 971 (1038)
Q Consensus 950 ~~A~~~~~~m~~~~~~~~~~~~ 971 (1038)
++|+..|++..+..+. +....
T Consensus 87 ~eA~~~~~~al~l~P~-~~~~~ 107 (356)
T PLN03088 87 QTAKAALEKGASLAPG-DSRFT 107 (356)
T ss_pred HHHHHHHHHHHHhCCC-CHHHH
Confidence 7777777777666554 44433
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0046 Score=53.13 Aligned_cols=91 Identities=20% Similarity=0.247 Sum_probs=46.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 001645 869 LIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGK 948 (1038)
Q Consensus 869 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~ 948 (1038)
+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.+++..... +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3444445555555555555554432 2222444455555555556666666665555432 2233455555555666666
Q ss_pred HHHHHHHHHHHHH
Q 001645 949 VAEAWDVFYRMKI 961 (1038)
Q Consensus 949 ~~~A~~~~~~m~~ 961 (1038)
+++|...+++..+
T Consensus 84 ~~~a~~~~~~~~~ 96 (100)
T cd00189 84 YEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHc
Confidence 6666666655544
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0057 Score=52.49 Aligned_cols=78 Identities=14% Similarity=0.324 Sum_probs=47.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CccHhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 001645 868 SLIHGLVQRGQIEEALAKVETMKQAGI-YPTVHVYTSFVVHFFREK--------QVGRALEIFERMRQEGCEPTVVTYTA 938 (1038)
Q Consensus 868 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~y~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~pd~~~~~~ 938 (1038)
..|.-+...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|+..+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555666666666666666666 666666666666655432 23345666666666666677777766
Q ss_pred HHHHHHh
Q 001645 939 LIQGFAN 945 (1038)
Q Consensus 939 li~~~~~ 945 (1038)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 6665543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0062 Score=55.37 Aligned_cols=107 Identities=9% Similarity=0.032 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHH
Q 001645 864 FVFGSLIHGLVQRGQIEEALAKVETMKQAGI--YPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPT----VVTYT 937 (1038)
Q Consensus 864 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~~~~ 937 (1038)
.++..+...+.+.|++++|...|..+.+..- ......+..+...+.+.|++++|.+.|+.+... .|+ ...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHHH
Confidence 4566778888999999999999999987421 112456777999999999999999999999875 233 45677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 001645 938 ALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSM 973 (1038)
Q Consensus 938 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 973 (1038)
.+..++.+.|+.++|.+.++++.+..|. +..+..+
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~ 115 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYPG-SSAAKLA 115 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCcC-ChhHHHH
Confidence 8888999999999999999999998776 5544443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0083 Score=55.76 Aligned_cols=103 Identities=12% Similarity=0.063 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001645 899 HVYTSFVVHFFREKQVGRALEIFERMRQEGCEP-TVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGC 977 (1038)
Q Consensus 899 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 977 (1038)
...-.+...+...|++++|..+|+-+..- .| +..-|..|.-.|...|++++|+..|.......+. |+..+-.+..+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 33444555667788888888888888764 45 4556677777888888888888888888888876 88888888888
Q ss_pred HHhcCChHHHHHHHHHHHHC-CCCCChh
Q 001645 978 LCKVGKSEEALELLSEMTES-GIVPSNI 1004 (1038)
Q Consensus 978 ~~~~g~~~~A~~l~~~m~~~-g~~p~~~ 1004 (1038)
|...|+.+.|.+-|+..... +-.|...
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~~~~~~~~ 140 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRICGEVSEHQ 140 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHhccChhHH
Confidence 88888888888888876642 4445443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0027 Score=64.48 Aligned_cols=97 Identities=20% Similarity=0.284 Sum_probs=47.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 001645 910 REKQVGRALEIFERMRQEGCEP-TVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEAL 988 (1038)
Q Consensus 910 ~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 988 (1038)
+.+++++|+..|.+.++. .| |++-|..=..+|.+.|.++.|++-.+..+...+. -..+|..|..+|...|++++|+
T Consensus 93 ~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHHH
Confidence 344555555555555442 33 3333344444555555555555555555544443 3445555555555555555555
Q ss_pred HHHHHHHHCCCCCChhcHHHHHH
Q 001645 989 ELLSEMTESGIVPSNINFRTIFF 1011 (1038)
Q Consensus 989 ~l~~~m~~~g~~p~~~~~~~l~~ 1011 (1038)
+.|++.++ +.|+..+|.+=+.
T Consensus 170 ~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHhhhc--cCCCcHHHHHHHH
Confidence 55555443 4455444444443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0076 Score=58.86 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=59.6
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001645 898 VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEP--TVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFI 975 (1038)
Q Consensus 898 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 975 (1038)
...|..+...+...|++++|+..|++.......| ...+|..+...|.+.|++++|++.+++..+..+. ...++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 3445555666666677777777777776542111 1346667777777777777777777777766544 455666666
Q ss_pred HHHH-------hcCChHHHHHHHHH
Q 001645 976 GCLC-------KVGKSEEALELLSE 993 (1038)
Q Consensus 976 ~~~~-------~~g~~~~A~~l~~~ 993 (1038)
.+|. ..|++++|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 6666 67777755555544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.015 Score=57.03 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 001645 865 VFGSLIHGLVQRGQIEEALAKVETMKQAGIYPT--VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEP-TVVTYTALIQ 941 (1038)
Q Consensus 865 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~ 941 (1038)
.|..+...+...|++++|...|++..+.+..++ ...|..+...|.+.|++++|...+++..+. .| +...+..+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 455555555666666666666666554321111 244555555666666666666666665543 23 3344444455
Q ss_pred HHHhcCCH
Q 001645 942 GFANLGKV 949 (1038)
Q Consensus 942 ~~~~~g~~ 949 (1038)
.|...|+.
T Consensus 115 ~~~~~g~~ 122 (172)
T PRK02603 115 IYHKRGEK 122 (172)
T ss_pred HHHHcCCh
Confidence 55555543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0091 Score=58.11 Aligned_cols=87 Identities=18% Similarity=0.325 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC----------------CChhHHH
Q 001645 227 AKNIKTWTILVSLYGK-----AKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNA----------------GKGDIAL 285 (1038)
Q Consensus 227 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------------g~~~~A~ 285 (1038)
..+-.+|..++..|.+ .|.++=....+..|.+.|+.-|..+|+.||+.+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3455555555555543 355666666666677777777777777776665431 1223444
Q ss_pred HHHHHHHhCCCcCCHHHHHHHHHHHHhc
Q 001645 286 EFYKEMAQKEMVLDLSLYKIVMNCAAKL 313 (1038)
Q Consensus 286 ~~~~~m~~~~~~p~~~~~~~li~~~~~~ 313 (1038)
+++++|...|+-||..|+..+++.+.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 5555555555555555555555554433
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0094 Score=57.99 Aligned_cols=101 Identities=23% Similarity=0.356 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHh----------------cCCHHHHH
Q 001645 860 KLDEFVFGSLIHGLVQ-----RGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFR----------------EKQVGRAL 918 (1038)
Q Consensus 860 ~p~~~t~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~----------------~g~~~~A~ 918 (1038)
..|..+|..++..|.+ .|.++-....+..|.+.|+.-|..+|+.|++.+=+ -.+.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3466666666666654 36666666667777777777777777777776643 12446689
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 001645 919 EIFERMRQEGCEPTVVTYTALIQGFANLGK-VAEAWDVFYRMK 960 (1038)
Q Consensus 919 ~~~~~m~~~g~~pd~~~~~~li~~~~~~g~-~~~A~~~~~~m~ 960 (1038)
+++++|...|+.||..|+..|++.+++.+. ..+.++++--|.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 999999999999999999999999977665 334444444443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.042 Score=58.29 Aligned_cols=291 Identities=14% Similarity=0.045 Sum_probs=137.0
Q ss_pred cCCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-----------hHHHHHHHH
Q 001645 699 RGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGS-----------TYKYLIISL 767 (1038)
Q Consensus 699 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----------~~~~ll~~~ 767 (1038)
+..++..|...+....+..+. +..-|..=...+...|++++|+--.+.-.+. +|+.. ....++.+.
T Consensus 61 k~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHHHHH
Confidence 345566667777777666554 4555555555666666777666554443332 11111 011111111
Q ss_pred HhhcCCC---hHHHHHHHHHHHHCCCC-CCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcC
Q 001645 768 SGRKGRK---VDHAIKIFQEMVNAGHI-PDKELVETY-LDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAG 842 (1038)
Q Consensus 768 ~~~~~~~---~~~A~~~~~~m~~~~~~-~d~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 842 (1038)
...+..+ ...++..++........ |....+..+ ..++.-.|++++|.++--...+....+....-.-...+-..+
T Consensus 138 ~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~ 217 (486)
T KOG0550|consen 138 EKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYND 217 (486)
T ss_pred HHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccccccccc
Confidence 1111111 11112222222222211 211222211 455666677777777666666655433222222222333456
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHH
Q 001645 843 ELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFE 922 (1038)
Q Consensus 843 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~ 922 (1038)
+.+.|...|++.... .|+...-.++- .-.+.++.+++.| +-..+.|.+.+|.+.|.
T Consensus 218 ~~~ka~~hf~qal~l--dpdh~~sk~~~----------~~~k~le~~k~~g------------N~~fk~G~y~~A~E~Yt 273 (486)
T KOG0550|consen 218 NADKAINHFQQALRL--DPDHQKSKSAS----------MMPKKLEVKKERG------------NDAFKNGNYRKAYECYT 273 (486)
T ss_pred chHHHHHHHhhhhcc--ChhhhhHHhHh----------hhHHHHHHHHhhh------------hhHhhccchhHHHHHHH
Confidence 667777777766653 34433222111 1111122222221 22345677777777777
Q ss_pred HHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 001645 923 RMRQE---GCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGI 999 (1038)
Q Consensus 923 ~m~~~---g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~ 999 (1038)
+.+.. ..+|+...|........+.|+..+|+.--+...+.... =...|-.-..++...++|++|++-++...+...
T Consensus 274 eal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 274 EALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 76642 23344555555555666777777777776666554322 122333334555556677777777776654332
Q ss_pred CC-ChhcHHHHHHHHhccC
Q 001645 1000 VP-SNINFRTIFFGLNRED 1017 (1038)
Q Consensus 1000 ~p-~~~~~~~l~~~~~~~g 1017 (1038)
.+ ...+++....+|.+..
T Consensus 353 s~e~r~~l~~A~~aLkkSk 371 (486)
T KOG0550|consen 353 DCEIRRTLREAQLALKKSK 371 (486)
T ss_pred ccchHHHHHHHHHHHHHhh
Confidence 22 2344444445555433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.034 Score=57.20 Aligned_cols=115 Identities=11% Similarity=0.091 Sum_probs=96.7
Q ss_pred CccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHH
Q 001645 895 YPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLG---KVAEAWDVFYRMKIKGPFPDFRTY 971 (1038)
Q Consensus 895 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~ 971 (1038)
+-|...|..|...|...|+.+.|..-|.+..+.. .+|...+..+..++..+. ...+|.++|+++....+. |..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 7788999999999999999999999999998752 445666666766666443 367999999999999888 99999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhcHHHHHHHH
Q 001645 972 SMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRTIFFGL 1013 (1038)
Q Consensus 972 ~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~ 1013 (1038)
..|.-.+...|++.+|...|+.|++ .-|....++.+|..-
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~--~lp~~~~rr~~ie~~ 270 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD--LLPADDPRRSLIERS 270 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh--cCCCCCchHHHHHHH
Confidence 9999999999999999999999997 567777888888744
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.015 Score=64.33 Aligned_cols=98 Identities=10% Similarity=0.107 Sum_probs=69.5
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCH
Q 001645 835 IRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQV 914 (1038)
Q Consensus 835 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~ 914 (1038)
...+...|++++|++.|+++.+.. +-+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 455667788888888888887752 3345667777777788888888888888877653 34566777777788888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHH
Q 001645 915 GRALEIFERMRQEGCEPTVVTY 936 (1038)
Q Consensus 915 ~~A~~~~~~m~~~g~~pd~~~~ 936 (1038)
++|+..|++.++. .|+....
T Consensus 87 ~eA~~~~~~al~l--~P~~~~~ 106 (356)
T PLN03088 87 QTAKAALEKGASL--APGDSRF 106 (356)
T ss_pred HHHHHHHHHHHHh--CCCCHHH
Confidence 8888888887764 4544433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0028 Score=50.25 Aligned_cols=57 Identities=21% Similarity=0.265 Sum_probs=41.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 939 LIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 939 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
+...+.+.|++++|.+.|+++++..|. +...|..+..++...|++++|...++++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666777777777777777777666 777777777777777777777777777764
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.17 Score=47.66 Aligned_cols=134 Identities=17% Similarity=0.127 Sum_probs=101.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHH
Q 001645 859 SKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEP---TVVT 935 (1038)
Q Consensus 859 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~~ 935 (1038)
..|+...--.|..++...|+..||...|++...--+.-|....-.+.++....++...|...++++.+.. | ++.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCc
Confidence 3577777778888899999999999999888765566778888888888888999999999999887742 3 2334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 936 YTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 936 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
.-.+...|...|++++|+..|+...+.-+.|...+ ....-+.+.|+..+|..-+.++.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~--~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGPQARI--YYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHH--HHHHHHHHhcchhHHHHHHHHHHH
Confidence 45667888889999999999998888654444444 455667888887777666655543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.19 Score=53.72 Aligned_cols=22 Identities=18% Similarity=0.040 Sum_probs=13.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 001645 729 MMQYGRAGLTEMAMRVFEDMKA 750 (1038)
Q Consensus 729 i~~~~~~g~~~~A~~~~~~m~~ 750 (1038)
...|-..+++++|...|.+..+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~ 63 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAAD 63 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHH
Confidence 3456666777777777766543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.86 Score=48.34 Aligned_cols=251 Identities=16% Similarity=0.105 Sum_probs=112.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH--hhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001645 735 AGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLS--GRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQL 812 (1038)
Q Consensus 735 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~ 812 (1038)
.|+++.|.+-|+.|.+ .|.... .=+.+++ ....|..+.|..+-+..-+..... .....+.++..|..|+++.
T Consensus 133 eG~~~~Ar~kfeAMl~---dPEtRl--lGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l-~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 133 EGDYEDARKKFEAMLD---DPETRL--LGLRGLYLEAQRLGAREAARHYAERAAEKAPQL-PWAARATLEARCAAGDWDG 206 (531)
T ss_pred cCchHHHHHHHHHHhc---ChHHHH--HhHHHHHHHHHhcccHHHHHHHHHHHHhhccCC-chHHHHHHHHHHhcCChHH
Confidence 4666666666666654 122211 1111111 112345555555555444332211 2344455556666666666
Q ss_pred HHHHHHHHHHcCCCCcc----hHHHHHHHHH---HcCCHhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHH
Q 001645 813 AKSCMDVLRKVGFTVPL----SYSLYIRALC---RAGELEEALALLDEVKEERSKLDEFVF-GSLIHGLVQRGQIEEALA 884 (1038)
Q Consensus 813 A~~~~~~~~~~~~~~~~----~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~li~~~~~~g~~~~A~~ 884 (1038)
|+++.+.-......... .--.|+.+-. -.-+...|...-.+..+ +.||.+-- -.-..++.+.|++.++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh
Confidence 66666554433322111 1111111111 01123333333333332 34443322 222345666666666666
Q ss_pred HHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001645 885 KVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQE-GCEPT-VVTYTALIQGFANLGKVAEAWDVFYRMKIK 962 (1038)
Q Consensus 885 ~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 962 (1038)
+++.+-+.. |-..++. +..+.+.|+. ++.-+++.... .++|| .....++..+-...|++..|..-.+.....
T Consensus 285 ilE~aWK~e--PHP~ia~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 285 ILETAWKAE--PHPDIAL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHHhcC--CChHHHH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 666666542 3222222 2223344432 22222222110 12443 344455555555666666666655555443
Q ss_pred CCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCC
Q 001645 963 GPFPDFRTYSMFIGCLCKV-GKSEEALELLSEMTESGIVP 1001 (1038)
Q Consensus 963 ~~~~~~~~~~~l~~~~~~~-g~~~~A~~l~~~m~~~g~~p 1001 (1038)
.|....|..|.+.-... |+-.++.+.+.+-+...-.|
T Consensus 359 --~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 359 --APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred --CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 34556666666665444 77777777776666544444
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.2 Score=51.93 Aligned_cols=175 Identities=12% Similarity=0.092 Sum_probs=102.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcchH---HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c
Q 001645 802 DCLCEVGMLQLAKSCMDVLRKVGFTVPLSY---SLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQ--R 876 (1038)
Q Consensus 802 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~--~ 876 (1038)
..+.+.|++++|.+.|+.+....+..+... -.++.++.+.+++++|...+++..+.-..-...-|...+.+.+. .
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~ 119 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMAL 119 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhc
Confidence 334556777777777777776666554332 44566777788888888888887775322222333333444331 1
Q ss_pred ---------------CC---HHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 001645 877 ---------------GQ---IEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTA 938 (1038)
Q Consensus 877 ---------------g~---~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ 938 (1038)
.+ ..+|+..|+.+.+. -|+ ..-..+|...+..+.+. .-..- -.
T Consensus 120 ~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~---la~~e-~~ 180 (243)
T PRK10866 120 DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDR---LAKYE-LS 180 (243)
T ss_pred chhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHH---HHHHH-HH
Confidence 11 22344444444432 222 22234444444443321 01111 14
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001645 939 LIQGFANLGKVAEAWDVFYRMKIKGP--FPDFRTYSMFIGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 939 li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
+..-|.+.|.+..|..-++.+.+.-+ .....+...++.+|...|..++|.+..+-+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 55678889999999999999988633 2345677788899999999999988776654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.019 Score=61.00 Aligned_cols=131 Identities=13% Similarity=0.163 Sum_probs=80.0
Q ss_pred chHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHH
Q 001645 829 LSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHG-LVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVH 907 (1038)
Q Consensus 829 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~ 907 (1038)
.+|-.+++..-+.+..++|.++|.+..+.+ ..+...|...... |...++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356677777777777777777777776532 1222333333222 33345666677777777654 45566667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001645 908 FFREKQVGRALEIFERMRQEGCEPTV---VTYTALIQGFANLGKVAEAWDVFYRMKIK 962 (1038)
Q Consensus 908 ~~~~g~~~~A~~~~~~m~~~g~~pd~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 962 (1038)
+.+.|+.+.|..+|++.... +.++. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777754 22222 36777777777777777777777777665
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0038 Score=50.08 Aligned_cols=61 Identities=23% Similarity=0.364 Sum_probs=37.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhcHHH
Q 001645 945 NLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRT 1008 (1038)
Q Consensus 945 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 1008 (1038)
+.|++++|++.|+++.+..|. +...+..++.+|.+.|++++|.++++++.. ..|+...+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHH
Confidence 456666666666666666665 666666666666666666666666666664 2454433333
|
... |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.025 Score=52.69 Aligned_cols=96 Identities=9% Similarity=-0.080 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001645 795 ELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLV 874 (1038)
Q Consensus 795 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 874 (1038)
..+-.+..-+...|++++|.++|+.+...++.+...|..|...+-..|++++|+..|....... +-|...+-.+..++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3344555667778888888888888888888777888888888888888888888888887764 345666677777788
Q ss_pred hcCCHHHHHHHHHHHHH
Q 001645 875 QRGQIEEALAKVETMKQ 891 (1038)
Q Consensus 875 ~~g~~~~A~~~~~~m~~ 891 (1038)
..|+.+.|.+-|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88888888888877665
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.062 Score=62.09 Aligned_cols=63 Identities=16% Similarity=0.082 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 932 TVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 932 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
+...|.++.-.+...|++++|...++++.+.++ +...|..+..+|...|+.++|.+.+++..+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM--SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555555555556777777777777766653 556677777777777777777777766654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.042 Score=53.84 Aligned_cols=94 Identities=12% Similarity=0.091 Sum_probs=65.4
Q ss_pred chHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHH
Q 001645 829 LSYSLYIRALCRAGELEEALALLDEVKEERSKLD--EFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVV 906 (1038)
Q Consensus 829 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~ 906 (1038)
..+..+...+...|++++|+..|++..+....+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 4567777788888888888888888876533332 3567777888888888888888888877642 334556666677
Q ss_pred HHHhcCCHHHHHHHHHH
Q 001645 907 HFFREKQVGRALEIFER 923 (1038)
Q Consensus 907 ~~~~~g~~~~A~~~~~~ 923 (1038)
.|...|+...+..-++.
T Consensus 115 ~~~~~g~~~~a~~~~~~ 131 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDE 131 (172)
T ss_pred HHHHcCChHhHhhCHHH
Confidence 77777776555544333
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.071 Score=54.53 Aligned_cols=130 Identities=16% Similarity=0.226 Sum_probs=87.9
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCH
Q 001645 835 IRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQV 914 (1038)
Q Consensus 835 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~ 914 (1038)
.+-+.+.+++++|+..|.+.++. .+-|.+.|..-..+|++.|..+.|++-.+.....+ +--..+|..|..+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcH
Confidence 34556778888888888888885 33466777778888888888888888877777643 33457788888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCHH---HHHHHHHHHHHcCCCCCH
Q 001645 915 GRALEIFERMRQEGCEPTVVTYTALIQGF-ANLGKVA---EAWDVFYRMKIKGPFPDF 968 (1038)
Q Consensus 915 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~-~~~g~~~---~A~~~~~~m~~~~~~~~~ 968 (1038)
++|++.|++.++ +.|+-.+|..=+..- -+.+... .+..-++.....|..||.
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 888888888886 578766665433322 2222222 444444444444544553
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.036 Score=58.96 Aligned_cols=130 Identities=12% Similarity=0.084 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHH-cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001645 796 LVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCR-AGELEEALALLDEVKEERSKLDEFVFGSLIHGLV 874 (1038)
Q Consensus 796 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 874 (1038)
+|..++...-+.+.++.|+.+|....+.+......|-.....-.+ .++.+.|..+|+...+. +..+...|...++-+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 344455555555556666666666654433333334443444233 34444466666666654 4455566666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcc---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001645 875 QRGQIEEALAKVETMKQAGIYPT---VHVYTSFVVHFFREKQVGRALEIFERMRQE 927 (1038)
Q Consensus 875 ~~g~~~~A~~~~~~m~~~g~~p~---~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 927 (1038)
+.++.+.|..+|++.... +.++ ...|...+..=.+.|+++.+..+.+++.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666543 2222 246666666666667777776666666653
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0067 Score=48.78 Aligned_cols=64 Identities=22% Similarity=0.203 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 001645 932 TVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVG-KSEEALELLSEMTE 996 (1038)
Q Consensus 932 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~l~~~m~~ 996 (1038)
++.+|..+...+...|++++|+..|++..+..+. ++..|..+..+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3455666666666666677777777666666655 6666666666666666 56666666666543
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.022 Score=55.52 Aligned_cols=95 Identities=14% Similarity=0.048 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001645 863 EFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYP--TVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALI 940 (1038)
Q Consensus 863 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li 940 (1038)
...|..+...+...|++++|+..|++.......+ ...+|..+...|...|+.++|+..+++..+.. +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445555666666677777777777665432111 22466667777777777777777777776541 22334455555
Q ss_pred HHHH-------hcCCHHHHHHHHHH
Q 001645 941 QGFA-------NLGKVAEAWDVFYR 958 (1038)
Q Consensus 941 ~~~~-------~~g~~~~A~~~~~~ 958 (1038)
..+. ..|++++|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 5555 66666655544443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0045 Score=52.18 Aligned_cols=79 Identities=19% Similarity=0.296 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHcCC-CccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 001645 877 GQIEEALAKVETMKQAGI-YPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEP-TVVTYTALIQGFANLGKVAEAWD 954 (1038)
Q Consensus 877 g~~~~A~~~~~~m~~~g~-~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~A~~ 954 (1038)
|++++|+.+++++.+..- .++...+-.+..+|.+.|++++|.+++++ .+. .| +......+..+|.+.|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 444555555555444211 11223333345555555555555555544 111 11 11222233444555555555555
Q ss_pred HHHH
Q 001645 955 VFYR 958 (1038)
Q Consensus 955 ~~~~ 958 (1038)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.41 Score=51.51 Aligned_cols=109 Identities=16% Similarity=0.174 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001645 865 VFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFA 944 (1038)
Q Consensus 865 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~ 944 (1038)
+.+..|.-+...|+...|.++..+.+ .|+..-|-.-+.+|+..+++++-.++... +-.++-|--++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44445556666777777766655554 56777777777777777777766654322 123466777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 001645 945 NLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSE 993 (1038)
Q Consensus 945 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~ 993 (1038)
+.|+..+|..+..++ . + ..-+..|.+.|+|.+|.+.--+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777777662 1 1 3455667777777777666444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.25 Score=51.16 Aligned_cols=178 Identities=10% Similarity=0.042 Sum_probs=104.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh-hhHHHHHHHHhc
Q 001645 340 CVLKSFCVSMRIREALEFIRNLKSKEISMDRDH--FETLVKGLCIAGRISDALEIVDIMMRRNLVDG-KIYGIIIGGYLR 416 (1038)
Q Consensus 340 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~li~~~~~ 416 (1038)
.....+...|++++|.+.|+.+....+...... .-.+..+|.+.+++++|...+++..+..+.+. .-|.....+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 344555678888888888888887655432221 23456777888888888888888888777643 223333333321
Q ss_pred --cC---------------C---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 001645 417 --KN---------------D---LSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVA 476 (1038)
Q Consensus 417 --~g---------------~---~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~ 476 (1038)
.+ + ..+|++.|+++.+. |-...-..+|...+..+... =...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~----la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR----LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH----HHHH
Confidence 11 1 12333444444433 22222234444333333221 0111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 477 VTAMVAGHVRQDNLSEAWKVFKCMEDK--GIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQ 536 (1038)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (1038)
--.+.+.|.+.|.+..|..-++.+.+. +.+....+...++.+|...|..++|..+...+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 124566788888888888888888765 223344556677788888888888887776654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.66 Score=46.45 Aligned_cols=129 Identities=13% Similarity=0.058 Sum_probs=68.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-----HHHHHH
Q 001645 867 GSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVT-----YTALIQ 941 (1038)
Q Consensus 867 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~-----~~~li~ 941 (1038)
++++..+.-.|.+.-.+..+++..+.+-+.+......|++.-.+.|+.+.|...|++..+..-+.|..+ ..+...
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 344444444555555555555555544445555555555555566666666666665443211222222 222223
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 942 GFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 942 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
.|.-+.++.+|...+.++....+. |+...|.=+-++.-.|+..+|++.++.|++
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445566666666666665555 555555555555556666666666666664
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.075 Score=61.44 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=44.7
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001645 897 TVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 897 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 965 (1038)
+...|..+.-.....|++++|...+++.++. .|+...|..+...|...|+.++|.+.+++.....|.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3455555555555567777777777777664 356667777777777777777777777777666555
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.1 Score=55.84 Aligned_cols=149 Identities=18% Similarity=0.265 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhcc-CCHHHHHHHHHHHHHC----CCCCC--HHHHHH
Q 001645 372 HFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRK-NDLSKALVQFERMKES----GYLPM--ASTYTE 444 (1038)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ 444 (1038)
.|...+..|...|++..|-++ +..+...|... |++++|++.|.+..+. | .+. ..++..
T Consensus 96 ~~~~A~~~y~~~G~~~~aA~~--------------~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~ 160 (282)
T PF14938_consen 96 CYEKAIEIYREAGRFSQAAKC--------------LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLK 160 (282)
T ss_dssp HHHHHHHHHHHCT-HHHHHHH--------------HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHH
Confidence 344455667777777777665 45566677777 8888888888776542 2 111 345666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC-----HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCH--HHHHH
Q 001645 445 LMQHLFKLNEYKKGCELYNEMLKRGIQPD-----SV-AVTAMVAGHVRQDNLSEAWKVFKCMEDK--GIRPTR--KSYSV 514 (1038)
Q Consensus 445 ll~~~~~~~~~~~a~~l~~~m~~~g~~p~-----~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~--~~~~~ 514 (1038)
+...+.+.|++++|.++|++........+ .. .+-..+-++...||+..|.+.|++.... ++..+. .....
T Consensus 161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~ 240 (282)
T PF14938_consen 161 AADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLED 240 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Confidence 77788889999999999998887533221 21 2233344666788999999999988754 232222 23344
Q ss_pred HHHHHHh--cCCHHHHHHHHHHH
Q 001645 515 FIKELCR--VSRTNEILKVLNNM 535 (1038)
Q Consensus 515 li~~~~~--~g~~~~A~~~~~~m 535 (1038)
||.++-. ...++.++.-|+.+
T Consensus 241 l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 241 LLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHhCCHHHHHHHHHHHccc
Confidence 5555533 23355555555554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.14 Score=48.56 Aligned_cols=72 Identities=25% Similarity=0.391 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HCCCCCChhcHH
Q 001645 935 TYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMT-----ESGIVPSNINFR 1007 (1038)
Q Consensus 935 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~-----~~g~~p~~~~~~ 1007 (1038)
....++..+...|++++|.++.+++....|. |...|..+|.+|...|+..+|++.|+++. +.|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 3456677788899999999999999998888 88999999999999999999999998875 458888875543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.46 E-value=1.8 Score=47.10 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=44.9
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHH
Q 001645 838 LCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTS 903 (1038)
Q Consensus 838 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~ 903 (1038)
+-..|++.++.-.-..+.+ +.|++.+|..+.-++....++++|..++..+ +|+..++++
T Consensus 472 Lysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 4457888888777666666 6788888888888888888888888888764 567666665
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.44 E-value=2.4 Score=48.35 Aligned_cols=42 Identities=12% Similarity=0.316 Sum_probs=23.0
Q ss_pred HHhcCCHHHHHHHHHHHHH-cCCCccHhhHHHHHHHHHhcCCH
Q 001645 873 LVQRGQIEEALAKVETMKQ-AGIYPTVHVYTSFVVHFFREKQV 914 (1038)
Q Consensus 873 ~~~~g~~~~A~~~~~~m~~-~g~~p~~~~y~~li~~~~~~g~~ 914 (1038)
-...|.++.|++.--.+.. ..+-|...+|..|.-+-|....+
T Consensus 1031 ql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raF 1073 (1189)
T KOG2041|consen 1031 QLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAF 1073 (1189)
T ss_pred HHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhh
Confidence 3445666666655444443 34566677777665555444433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.017 Score=45.73 Aligned_cols=61 Identities=15% Similarity=0.181 Sum_probs=41.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001645 904 FVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 904 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 965 (1038)
+...+...|++++|+..|+++++.. +-+...+..+..++...|++++|...|+++.+..|.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3455667777777777777777653 225566677777777777777777777777766543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.12 Score=46.31 Aligned_cols=82 Identities=18% Similarity=0.137 Sum_probs=35.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CcchHHHHHHHHHHcCCHhHH
Q 001645 773 RKVDHAIKIFQEMVNAGHIPDK--ELVETYLDCLCEVGMLQLAKSCMDVLRKVGFT---VPLSYSLYIRALCRAGELEEA 847 (1038)
Q Consensus 773 ~~~~~A~~~~~~m~~~~~~~d~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A 847 (1038)
|+.++|+.+|++.+..|...+. ..+-.+...+...|++++|..+++......+. +......+..++...|+.++|
T Consensus 15 G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eA 94 (120)
T PF12688_consen 15 GREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEA 94 (120)
T ss_pred CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHH
Confidence 4555555555555555443321 12223344444445555555555444444333 111222223344445555555
Q ss_pred HHHHHHH
Q 001645 848 LALLDEV 854 (1038)
Q Consensus 848 ~~~~~~m 854 (1038)
++.+-..
T Consensus 95 l~~~l~~ 101 (120)
T PF12688_consen 95 LEWLLEA 101 (120)
T ss_pred HHHHHHH
Confidence 5554433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.018 Score=46.26 Aligned_cols=66 Identities=18% Similarity=0.261 Sum_probs=47.2
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcC
Q 001645 897 TVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLG-KVAEAWDVFYRMKIKG 963 (1038)
Q Consensus 897 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~ 963 (1038)
+..+|..+...+...|++++|+..|++.++.. +-+...|..+..+|.+.| ++++|++.+++..+..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 34567777777777888888888888777753 335667777777777777 6788888887776653
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.31 E-value=2.9 Score=47.79 Aligned_cols=203 Identities=15% Similarity=0.229 Sum_probs=130.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC--------HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCc
Q 001645 227 AKNIKTWTILVSLYGKAKLIGKALLVFEKMRKY-GFEPD--------AVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMV 297 (1038)
Q Consensus 227 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~--------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~ 297 (1038)
.|.+..|..|...-.+.-.++-|...|-+.... |++-- ...-.+=+.+| -|++++|+++|-+|-++++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 688899998888877777788888888776542 22110 01111122222 4889999999988877643
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 001645 298 LDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPE----RDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHF 373 (1038)
Q Consensus 298 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 373 (1038)
.|..+.+.||+-.+.++++. .|...| ...|+.+...+.....|++|.+.|..-.. .
T Consensus 766 --------Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~ 825 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------T 825 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------h
Confidence 36677788888777666542 121111 23588888888888888888888865321 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001645 374 ETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLN 453 (1038)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 453 (1038)
...+++|.+...+++-+.+...+.+ +....-.|..++...|.-++|.+.|-+-. .| ...+..|...+
T Consensus 826 e~~~ecly~le~f~~LE~la~~Lpe----~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~Ln 892 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTLPE----DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELN 892 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhcCc----ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHH
Confidence 3456666666666665555544433 33446677888888888888887764432 12 23455677778
Q ss_pred ChhHHHHHHHHH
Q 001645 454 EYKKGCELYNEM 465 (1038)
Q Consensus 454 ~~~~a~~l~~~m 465 (1038)
++.+|.++-+..
T Consensus 893 QW~~avelaq~~ 904 (1189)
T KOG2041|consen 893 QWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHhc
Confidence 888887766543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.02 Score=46.53 Aligned_cols=55 Identities=31% Similarity=0.314 Sum_probs=36.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 941 QGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 941 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
..|.+.+++++|.+.++++...+|. ++..|.....+|.+.|++++|.+.+++..+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3556666666666666666666665 666666666666667777777766666664
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.23 Score=44.65 Aligned_cols=89 Identities=16% Similarity=0.080 Sum_probs=54.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---ChhhHHHHHHHHhcc
Q 001645 343 KSFCVSMRIREALEFIRNLKSKEISMD--RDHFETLVKGLCIAGRISDALEIVDIMMRRNLV---DGKIYGIIIGGYLRK 417 (1038)
Q Consensus 343 ~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~~~~~ 417 (1038)
.++-..|+.++|+.+|++....|...+ ...+-.+...|...|++++|..+|+......+. +......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 445556777777777777776665543 234455666677777777777777776655443 223333344455666
Q ss_pred CCHHHHHHHHHHHH
Q 001645 418 NDLSKALVQFERMK 431 (1038)
Q Consensus 418 g~~~~A~~~~~~m~ 431 (1038)
|+.++|++.+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 77777776665544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.018 Score=46.01 Aligned_cols=64 Identities=20% Similarity=0.224 Sum_probs=45.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001645 206 GEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLV 272 (1038)
Q Consensus 206 ~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 272 (1038)
...|++++|.++|+.+.... |.+...+..+..+|.+.|++++|..+++.+... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 45677888888888887765 667777778888888888888888888887766 45544444443
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.92 Score=43.02 Aligned_cols=133 Identities=12% Similarity=0.093 Sum_probs=92.4
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CChhhHHH
Q 001645 262 EPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQI-PERDAYGC 340 (1038)
Q Consensus 262 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ 340 (1038)
.|+...--.|..++...|++.+|...|++...--.--|....-.+.++....+++..+...++++.+.... -+..+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 56766677788888888888888888888876545567777778888888888888888888887775421 12234555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001645 341 VLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIM 396 (1038)
Q Consensus 341 ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 396 (1038)
+.+.|...|+...|...|+...+.-..|....|- ...+.+.|+.+++..-+..+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y--~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPGPQARIYY--AEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHH--HHHHHHhcchhHHHHHHHHH
Confidence 6677778888888888888877765444444333 33456777776665544333
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.064 Score=55.95 Aligned_cols=94 Identities=15% Similarity=0.067 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHH
Q 001645 901 YTSFVVHFFREKQVGRALEIFERMRQEGCEPTV----VTYTALIQGFANLGKVAEAWDVFYRMKIKGPF--PDFRTYSMF 974 (1038)
Q Consensus 901 y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~l 974 (1038)
|...+..+.+.|++++|...|+.+++. .|+. ..+..+..+|...|++++|...|+.+.+..+. ..+..+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 444343334445556666666655553 2332 24445555666666666666666666554322 123344444
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 001645 975 IGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 975 ~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
+.+|...|++++|...+++..+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5555566666666666666554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.63 Score=46.89 Aligned_cols=169 Identities=14% Similarity=0.083 Sum_probs=92.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCc---chHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 001645 801 LDCLCEVGMLQLAKSCMDVLRKVGFTVP---LSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRG 877 (1038)
Q Consensus 801 i~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 877 (1038)
...+...|++.+|.+.|+.+....+..+ .+.-.++.++-+.|++++|...+++..+.-..-...-+...+.|.+...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3345566777777777777777666543 3456667778888888888888888776522211222333333332211
Q ss_pred -------------CHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001645 878 -------------QIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFA 944 (1038)
Q Consensus 878 -------------~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~ 944 (1038)
...+|...|+. ++.-|=...-..+|...+..+.+. .-.. --.+...|.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~~---------------li~~yP~S~y~~~A~~~l~~l~~~---la~~-e~~ia~~Y~ 152 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFEE---------------LIKRYPNSEYAEEAKKRLAELRNR---LAEH-ELYIARFYY 152 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHHH---------------HHHH-TTSTTHHHHHHHHHHHHHH---HHHH-HHHHHHHHH
T ss_pred hCccchhcccChHHHHHHHHHHHH---------------HHHHCcCchHHHHHHHHHHHHHHH---HHHH-HHHHHHHHH
Confidence 12233333333 333333444445555555544331 0111 123566788
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHH
Q 001645 945 NLGKVAEAWDVFYRMKIKGPFP--DFRTYSMFIGCLCKVGKSEEAL 988 (1038)
Q Consensus 945 ~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 988 (1038)
+.|.+..|..-++.+++.-|.. ...+...++.+|.+.|..+.|.
T Consensus 153 ~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8899999999999888874431 1245667788888888877443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.46 Score=44.91 Aligned_cols=72 Identities=24% Similarity=0.372 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 001645 371 DHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKE-----SGYLPMASTY 442 (1038)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~ 442 (1038)
.....++..+...|++++|..+.+.+...++.+...|..+|.+|...|+...|++.|+++.. .|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 35667788888999999999999999999999999999999999999999999999988743 4888877654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.93 E-value=5 Score=47.23 Aligned_cols=119 Identities=14% Similarity=0.157 Sum_probs=59.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 001645 373 FETLVKGLCIAGRISDALEIVDIMMRRNLVD---GKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHL 449 (1038)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 449 (1038)
...-|+.+++...++.|..+.+. .+... ......-.+-+.+.|++++|...|-+-... +.|. .++.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHh
Confidence 34445555555566655554322 11111 111222233445566777776666544322 1221 234444
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 450 FKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCME 501 (1038)
Q Consensus 450 ~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 501 (1038)
....+..+....++.+.+.|+. +...-+.|+.+|.+.++.+.-.++.+...
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 4445555555666666666654 44455666677777777666655555443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.87 E-value=3.3 Score=44.65 Aligned_cols=111 Identities=19% Similarity=0.170 Sum_probs=89.5
Q ss_pred chHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHH
Q 001645 829 LSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHF 908 (1038)
Q Consensus 829 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~ 908 (1038)
.+.+..|.-+...|+...|.++-.+.. -||..-|-..+.+++..++|++-..+... .-++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 456677888889999998888866653 38999999999999999999987775432 22458899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001645 909 FREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRM 959 (1038)
Q Consensus 909 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 959 (1038)
.+.|+..+|..++.++ ++..-+..|.++|++.+|.+..-+.
T Consensus 248 ~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999999988772 2245677899999999998887664
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.41 Score=49.48 Aligned_cols=108 Identities=11% Similarity=0.054 Sum_probs=54.6
Q ss_pred HHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCC
Q 001645 818 DVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQR---GQIEEALAKVETMKQAGI 894 (1038)
Q Consensus 818 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~---g~~~~A~~~~~~m~~~g~ 894 (1038)
+.-...+|.+...|-.|...|...|+.+.|...|.+..+. ..++...+..+..++... ....++..+|+++.+..
T Consensus 146 e~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D- 223 (287)
T COG4235 146 ETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD- 223 (287)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-
Confidence 3344455555666666666666666666666666666653 223344444444443322 12344555555555432
Q ss_pred CccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001645 895 YPTVHVYTSFVVHFFREKQVGRALEIFERMRQE 927 (1038)
Q Consensus 895 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 927 (1038)
+-|+.+...|...+...|++.+|...|+.|++.
T Consensus 224 ~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 224 PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 233334444444555555555555555555543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.47 E-value=1.5 Score=44.13 Aligned_cols=59 Identities=10% Similarity=0.047 Sum_probs=26.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 001645 344 SFCVSMRIREALEFIRNLKSKEISM--DRDHFETLVKGLCIAGRISDALEIVDIMMRRNLV 402 (1038)
Q Consensus 344 ~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 402 (1038)
.+...|++.+|.+.|+.+...-+.. -....-.++.++.+.|+++.|...++.+.+..+.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 3445555555555555555432211 1223334455555555555555555555554444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.23 Score=51.84 Aligned_cols=97 Identities=13% Similarity=0.144 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHH
Q 001645 865 VFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTV----HVYTSFVVHFFREKQVGRALEIFERMRQEGCEPT----VVTY 936 (1038)
Q Consensus 865 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~~~ 936 (1038)
.|...+..+.+.|++++|...|+.+.+. .|+. ..+-.+...|...|++++|...|+.+.+. .|+ ...+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl 220 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHH
Confidence 3444444445556777777777776653 2332 35556677777777777777777777754 232 3334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001645 937 TALIQGFANLGKVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 937 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 965 (1038)
..++..+...|+.++|.++|+++.+..|.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 44555666778888888888877776554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.42 E-value=1.8 Score=43.00 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001645 796 LVETYLDCLCEVGMLQLAKSCMDVLRK 822 (1038)
Q Consensus 796 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 822 (1038)
.|.-...+|....++++|..++.+..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~ 59 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASK 59 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 344445566677777777776666554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.46 Score=50.46 Aligned_cols=97 Identities=12% Similarity=-0.048 Sum_probs=52.3
Q ss_pred chHHHHHHHHHHcCCHhHHHHHHHHHHH----cCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCccH
Q 001645 829 LSYSLYIRALCRAGELEEALALLDEVKE----ERS-KLDEFVFGSLIHGLVQRGQIEEALAKVETMKQ-----AGIYPTV 898 (1038)
Q Consensus 829 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~ 898 (1038)
.+++.+.+++.-.|+++.|.+.|..... .|- .....+.-+|.+.|.-..++++|+.++++-.. ....-..
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~ 315 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL 315 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3455566666666666666666554332 121 12233445566666666666666666654332 1122234
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 899 HVYTSFVVHFFREKQVGRALEIFERMR 925 (1038)
Q Consensus 899 ~~y~~li~~~~~~g~~~~A~~~~~~m~ 925 (1038)
.+|-+|..+|...|..++|+.+.+.-+
T Consensus 316 RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 316 RACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 556666666666666666666655543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.36 E-value=7.5 Score=45.27 Aligned_cols=268 Identities=15% Similarity=0.150 Sum_probs=142.5
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 001645 688 ATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYL----ITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYL 763 (1038)
Q Consensus 688 ~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 763 (1038)
.+|..+...+-..|+++.|+.+++.=.+.+.. .+..-+..-+.-....|+.+-...++-.|... -+...+...
T Consensus 508 iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~ 584 (829)
T KOG2280|consen 508 ISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMT 584 (829)
T ss_pred eeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHH
Confidence 45666666667778888887777543322211 02223344455556667777776666666542 122222222
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcC-CCC-cchHHHHHHHHHH
Q 001645 764 IISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVL-RKVG-FTV-PLSYSLYIRALCR 840 (1038)
Q Consensus 764 l~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~-~~~~~~li~~~~~ 840 (1038)
+. +..-|..+|.+..+.. |. ..+-+.|-...+.+.+..+.-+- .... ... ........+.+.+
T Consensus 585 l~--------~~p~a~~lY~~~~r~~---~~---~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~ 650 (829)
T KOG2280|consen 585 LR--------NQPLALSLYRQFMRHQ---DR---ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAK 650 (829)
T ss_pred HH--------hchhhhHHHHHHHHhh---ch---hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhh
Confidence 11 4455666666654421 11 11222333333333222221111 0000 000 1122333344444
Q ss_pred cCCHhHH----------HHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHH
Q 001645 841 AGELEEA----------LALLDEVKE-ERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFF 909 (1038)
Q Consensus 841 ~g~~~~A----------~~~~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~ 909 (1038)
.....-. +++.+.+.. .|......+.+--+.-+..-|+..+|.++-.+.+ .||...|-.=+.+++
T Consensus 651 sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa 726 (829)
T KOG2280|consen 651 SKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALA 726 (829)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHH
Confidence 4332111 112222211 2333344455556666777788888888877776 678888888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 001645 910 REKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALE 989 (1038)
Q Consensus 910 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 989 (1038)
..+++++-+++-+.+. .+.-|.=.+.+|.+.|+.+||.+++.+.. +.. -...+|.+.|++.+|.+
T Consensus 727 ~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~------~l~---ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 727 DIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG------GLQ---EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred hhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC------ChH---HHHHHHHHhccHHHHHH
Confidence 8888887666654442 25556667778888888888888887652 111 46677888888888877
Q ss_pred HH
Q 001645 990 LL 991 (1038)
Q Consensus 990 l~ 991 (1038)
+-
T Consensus 792 ~A 793 (829)
T KOG2280|consen 792 LA 793 (829)
T ss_pred HH
Confidence 64
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.043 Score=45.33 Aligned_cols=61 Identities=18% Similarity=0.289 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001645 899 HVYTSFVVHFFREKQVGRALEIFERMRQE--GCE---PT-VVTYTALIQGFANLGKVAEAWDVFYRM 959 (1038)
Q Consensus 899 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---pd-~~~~~~li~~~~~~g~~~~A~~~~~~m 959 (1038)
.+|+.+...|...|++++|++.|++.++. ... |+ ..+++.+...|...|++++|++++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455555555555555555555554431 001 11 233444444444444444444444443
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.12 Score=42.01 Aligned_cols=59 Identities=19% Similarity=0.212 Sum_probs=41.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001645 906 VHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 906 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 965 (1038)
..|.+.+++++|.++++.+.... +.+...|......+.+.|++++|.+.|++..+.++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 45667777777777777777652 335566666777777777777887777777776654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.31 E-value=3.9 Score=41.66 Aligned_cols=123 Identities=22% Similarity=0.182 Sum_probs=54.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC--CccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 001645 872 GLVQRGQIEEALAKVETMKQAGI--YPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEP-TVVTYTALIQGFANLGK 948 (1038)
Q Consensus 872 ~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~ 948 (1038)
.+...|+++.|...+........ ......+......+...++.+.|...+.+..... .. ....+..+...+...+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 34444555555555554432110 0122222222333444555555555555555431 11 24444555555555555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 949 VAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 949 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
+++|...+.......+. ....+..+...+...|.++++...+.+...
T Consensus 218 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555544332 233333444444444455555555555443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.30 E-value=2.1 Score=46.66 Aligned_cols=75 Identities=21% Similarity=0.125 Sum_probs=47.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC----CCcchHHHHHHHHHH---cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001645 799 TYLDCLCEVGMLQLAKSCMDVLRKVGF----TVPLSYSLYIRALCR---AGELEEALALLDEVKEERSKLDEFVFGSLIH 871 (1038)
Q Consensus 799 ~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 871 (1038)
.++-.|....+++...++.+.+..... ..+..-.-+.-++-+ .|+.++|++++..+......++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 444456666677777777766665521 122223344556666 7888888888888666656677777777666
Q ss_pred HH
Q 001645 872 GL 873 (1038)
Q Consensus 872 ~~ 873 (1038)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 65
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.29 E-value=2 Score=46.14 Aligned_cols=106 Identities=13% Similarity=0.070 Sum_probs=66.7
Q ss_pred HHhcCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHhcC
Q 001645 449 LFKLNEYKKGCELYNEMLKR---GIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVF--IKELCRVS 523 (1038)
Q Consensus 449 ~~~~~~~~~a~~l~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--i~~~~~~g 523 (1038)
..+.|.+..|.+.|.+.+.. ...|+...|........+.|+..+|+.--+.....+ +...+..+ ..++...+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---SSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---HHHHHHHHHHHHHHHHHH
Confidence 45778888888888888875 345666677777778888888888888877776642 12222222 23444567
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhc
Q 001645 524 RTNEILKVLNNMQASKIVI-GDEIFHWVISCMEKK 557 (1038)
Q Consensus 524 ~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~ 557 (1038)
++++|.+-+++..+....+ ...++.....++.++
T Consensus 336 ~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkS 370 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKS 370 (486)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 7888888887765543322 233444444444433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.23 E-value=3.9 Score=41.21 Aligned_cols=135 Identities=13% Similarity=0.056 Sum_probs=85.5
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHH-----H
Q 001645 831 YSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSF-----V 905 (1038)
Q Consensus 831 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~l-----i 905 (1038)
.+.++..+...|.+.-.+.++.+.++...+.+......+.+.-.+.|+.+.|..+|++..+..-..|..+.+.+ .
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 35556666666777777777777777655666666777777777778887777777766553223333333333 3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001645 906 VHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFP 966 (1038)
Q Consensus 906 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 966 (1038)
..|.-++++..|...+.++.... .-|++..|+-.-...-.|+..+|++.++.|++..|.|
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 34555667777888887777542 2344444443333444678888888888888775543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.057 Score=44.59 Aligned_cols=62 Identities=29% Similarity=0.417 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001645 934 VTYTALIQGFANLGKVAEAWDVFYRMKIK----GPF-PD-FRTYSMFIGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 934 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
.+|+.+...|...|++++|+..|++..+. |.. |+ ..+++.+..+|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566666666666666666666666542 211 11 3456666666666666666666666543
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.18 E-value=4.3 Score=45.99 Aligned_cols=89 Identities=17% Similarity=0.200 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----------
Q 001645 441 TYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRK---------- 510 (1038)
Q Consensus 441 t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------- 510 (1038)
+...+..-+-+...+..|.++|..|-.. ..++..+...+++.+|..+-+...+- .||+.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhh
Confidence 3333444444455566666666665322 34566666777777777776655432 23322
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 001645 511 -SYSVFIKELCRVSRTNEILKVLNNMQASKI 540 (1038)
Q Consensus 511 -~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 540 (1038)
-|...-++|.+.|+..+|..+++++....+
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 123334567788888888888888866543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.54 Score=52.77 Aligned_cols=87 Identities=20% Similarity=0.216 Sum_probs=50.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----------
Q 001645 900 VYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDF----------- 968 (1038)
Q Consensus 900 ~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----------- 968 (1038)
+...+..-+-+...+.-|-++|.+|-.. ..+++.+...|+|.+|..+.++..+.- ||.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~--~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFK--DDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcccc--ccccchHHHHhhhh
Confidence 3333334444445555666666665321 345666677777777777776654421 111
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 001645 969 RTYSMFIGCLCKVGKSEEALELLSEMTES 997 (1038)
Q Consensus 969 ~~~~~l~~~~~~~g~~~~A~~l~~~m~~~ 997 (1038)
.-+.--=.+|-++|+-.||.++++++...
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 11222335677888888999988887643
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.17 Score=55.55 Aligned_cols=99 Identities=20% Similarity=0.132 Sum_probs=70.0
Q ss_pred CccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 001645 895 YPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTV----VTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRT 970 (1038)
Q Consensus 895 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 970 (1038)
+.+...|+.+..+|.+.|++++|+..|++.++. .|+. ..|..+..+|.+.|+.++|+..++++.+.+ .+ .
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 456788999999999999999999999998874 6764 458899999999999999999999998752 11 1
Q ss_pred HHHHHH--HHHhcCChHHHHHHHHHHHHCCC
Q 001645 971 YSMFIG--CLCKVGKSEEALELLSEMTESGI 999 (1038)
Q Consensus 971 ~~~l~~--~~~~~g~~~~A~~l~~~m~~~g~ 999 (1038)
|..+.. .+..-.+.++..++++++...|.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 221111 01112233466667777766554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.09 E-value=5.6 Score=42.31 Aligned_cols=16 Identities=25% Similarity=0.221 Sum_probs=10.0
Q ss_pred HHhcCChHHHHHHHHH
Q 001645 978 LCKVGKSEEALELLSE 993 (1038)
Q Consensus 978 ~~~~g~~~~A~~l~~~ 993 (1038)
+.++++|++|.++|+-
T Consensus 256 ~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHhhcCHHHHHHHHHH
Confidence 4456666676666653
|
It is also involved in sporulation []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.99 Score=42.51 Aligned_cols=88 Identities=14% Similarity=0.057 Sum_probs=58.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 001645 907 HFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEE 986 (1038)
Q Consensus 907 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 986 (1038)
-+...|++++|..+|.-+.--+ .-|..-|..|...|...|++++|...|......++. |+..+.....+|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence 3445677777777777766532 223334455666666677777777777776666554 66666677777777777777
Q ss_pred HHHHHHHHHH
Q 001645 987 ALELLSEMTE 996 (1038)
Q Consensus 987 A~~l~~~m~~ 996 (1038)
|.+-|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7777777665
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.3 Score=49.21 Aligned_cols=84 Identities=20% Similarity=0.325 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhc----------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001645 878 QIEEALAKVETMKQAGIYPTVHVYTSFVVHFFRE----------------KQVGRALEIFERMRQEGCEPTVVTYTALIQ 941 (1038)
Q Consensus 878 ~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~----------------g~~~~A~~~~~~m~~~g~~pd~~~~~~li~ 941 (1038)
.++-....+..|.+.|+.-|..+|+.|++.+-+. .+-+-++.++++|...|+.||..+-..|++
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 3444444444455555555555555555444221 233568999999999999999999999999
Q ss_pred HHHhcCC-HHHHHHHHHHHHH
Q 001645 942 GFANLGK-VAEAWDVFYRMKI 961 (1038)
Q Consensus 942 ~~~~~g~-~~~A~~~~~~m~~ 961 (1038)
++++.+- ..+.+++.--|.+
T Consensus 167 ~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 167 AFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HhccccccHHHHHHHHHhhhh
Confidence 9998876 4466666655544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.77 Score=48.86 Aligned_cols=131 Identities=13% Similarity=0.072 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCC-ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHH
Q 001645 865 VFGSLIHGLVQRGQIEEALAKVETMK----QAGIY-PTVHVYTSFVVHFFREKQVGRALEIFERMRQE----GC-EPTVV 934 (1038)
Q Consensus 865 t~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~-p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~pd~~ 934 (1038)
.|..|.+.|.-.|+++.|+...+.-. +.|-+ .-...+..|.+++.-.|+++.|.+.|+.-... |- .-...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 46667777777888888887655432 22211 22356777888888889999998888875432 21 22455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001645 935 TYTALIQGFANLGKVAEAWDVFYRMKIK-----GPFPDFRTYSMFIGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 935 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
+..+|.+.|.-...+.+|+.++.+-... ...-...+|.+|..+|...|..++|+.+.+.-+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6677888888888888888887764431 112245678888999999999888888776654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.78 E-value=1.1 Score=51.50 Aligned_cols=165 Identities=21% Similarity=0.248 Sum_probs=100.9
Q ss_pred cchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCcc
Q 001645 828 PLSYSLYIRALCRAGELEEALALLDEVKEERSKLDE------FVFGSLIHGLVQ----RGQIEEALAKVETMKQAGIYPT 897 (1038)
Q Consensus 828 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~ 897 (1038)
|.....++...+-.|+-+.+++.+.+..+.+--... ..|..++..++- ....+.|.++++.+.+. -|+
T Consensus 188 Pp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~ 265 (468)
T PF10300_consen 188 PPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPN 265 (468)
T ss_pred CHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCC
Confidence 345566666777777777777777776553211111 124444443332 35677788888887764 566
Q ss_pred HhhHHHH-HHHHHhcCCHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 001645 898 VHVYTSF-VVHFFREKQVGRALEIFERMRQE--GC-EPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSM 973 (1038)
Q Consensus 898 ~~~y~~l-i~~~~~~g~~~~A~~~~~~m~~~--g~-~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 973 (1038)
...|... .+.+...|++++|++.|++.... .. +.....+--+...+.-.+++++|.+.|..+.+..-- +...|.-
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y 344 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAY 344 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHH
Confidence 6666544 35556678888888888876531 11 123445555667777888888888888888775433 3344443
Q ss_pred H-HHHHHhcCCh-------HHHHHHHHHHH
Q 001645 974 F-IGCLCKVGKS-------EEALELLSEMT 995 (1038)
Q Consensus 974 l-~~~~~~~g~~-------~~A~~l~~~m~ 995 (1038)
+ +.+|...|+. ++|.+++++..
T Consensus 345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 345 LAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3 3445557777 77888877765
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.73 E-value=3.9 Score=44.61 Aligned_cols=169 Identities=12% Similarity=0.101 Sum_probs=111.9
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCccHhhHHHHH
Q 001645 832 SLYIRALCRAGELEEALALLDEVKEER---SKLDEFVFGSLIHGLVQ---RGQIEEALAKVETMKQAGIYPTVHVYTSFV 905 (1038)
Q Consensus 832 ~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~y~~li 905 (1038)
-.++-.|....+++..+++.+.+...- +.-....--...-++-+ .|+.++|++++..+....-.++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 345556889999999999999998741 11111222233445556 899999999999976655678888999888
Q ss_pred HHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH----HHHHHHH----HHHHHcC---CC
Q 001645 906 VHFFR---------EKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKV----AEAWDVF----YRMKIKG---PF 965 (1038)
Q Consensus 906 ~~~~~---------~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~----~~A~~~~----~~m~~~~---~~ 965 (1038)
..|-+ ....++|+..|.+.-+. .||.++--.++..+...|.. .+..++- ....++| ..
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 87742 22367888888877654 46655443333344444432 2333333 1222233 34
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 001645 966 PDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSN 1003 (1038)
Q Consensus 966 ~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 1003 (1038)
.|-..+.+++.++.-.|+.++|.+..++|.... .|.+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~-~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK-PPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-Ccch
Confidence 577788899999999999999999999999752 4444
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.64 E-value=12 Score=43.79 Aligned_cols=110 Identities=15% Similarity=0.083 Sum_probs=76.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001645 898 VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGC 977 (1038)
Q Consensus 898 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 977 (1038)
-.+.+--+.-+...|+..+|.++-.+.. -||...|..-+.+++..+++++-+++.++++ .+.-|.-++.+
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~ 753 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEA 753 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHH
Confidence 3344444555666777777777766664 5788778777888888888888887777653 24557778888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHhccCChhhhhcCC
Q 001645 978 LCKVGKSEEALELLSEMTESGIVPSNINFRTIFFGLNREDNLYQITKRP 1026 (1038)
Q Consensus 978 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~~~~~~ 1026 (1038)
|.+.|+..||.+++.+... . .-.+.+|.+.|++.++.+.+
T Consensus 754 c~~~~n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHhcccHHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHH
Confidence 8888888888888765431 1 14566777788877755433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.51 E-value=8.3 Score=47.43 Aligned_cols=201 Identities=18% Similarity=0.162 Sum_probs=109.2
Q ss_pred CCHHHHHHHHHccccchhhHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001645 651 YTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMM 730 (1038)
Q Consensus 651 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~ 730 (1038)
.+-.++..|.+.+++++.+-+.++....... ++..-|. | -...++++.|..-+.++. ...|.-.++
T Consensus 851 YDl~Lal~VAq~SqkDPkEyLP~L~el~~m~---~~~rkF~--I--D~~L~ry~~AL~hLs~~~-------~~~~~e~~n 916 (1265)
T KOG1920|consen 851 YDLDLALLVAQKSQKDPKEYLPFLNELKKME---TLLRKFK--I--DDYLKRYEDALSHLSECG-------ETYFPECKN 916 (1265)
T ss_pred cchHHHHHHHHHhccChHHHHHHHHHHhhch---hhhhhee--H--HHHHHHHHHHHHHHHHcC-------ccccHHHHH
Confidence 3455667777778888777777766543211 1111110 0 111345555655555543 223444455
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--hcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001645 731 QYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSG--RKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVG 808 (1038)
Q Consensus 731 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g 808 (1038)
.--+.|.+.+|+.++. |+...+..+..+++. .....+++|.-+|+..-+ ..-.+.+|..+|
T Consensus 917 ~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~ 979 (1265)
T KOG1920|consen 917 YIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECG 979 (1265)
T ss_pred HHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhc
Confidence 5556777777776653 666666665555442 122355555555543211 122356667777
Q ss_pred CHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001645 809 MLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVET 888 (1038)
Q Consensus 809 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 888 (1038)
++++|..+...+....-.....--.|+.-+...+++-+|-++..+-... | .-.+..||+...+++|+.+...
T Consensus 980 dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 980 DWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred cHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHh
Confidence 7777776666554322111122255677777788888888887776542 2 2335556777777777766554
Q ss_pred HH
Q 001645 889 MK 890 (1038)
Q Consensus 889 m~ 890 (1038)
-.
T Consensus 1052 ~~ 1053 (1265)
T KOG1920|consen 1052 AK 1053 (1265)
T ss_pred cc
Confidence 43
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.41 E-value=4.2 Score=42.14 Aligned_cols=144 Identities=10% Similarity=0.045 Sum_probs=90.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 001645 379 GLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKG 458 (1038)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 458 (1038)
.....|++.+|..+|+........+...--.++..|...|+.+.|..++..+...--.........-|..+.+.....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 35567788888888888777777766667777888888888888888887766542222222222334444444444444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH
Q 001645 459 CELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDK--GIRPTRKSYSVFIKELCRVSRT 525 (1038)
Q Consensus 459 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~ 525 (1038)
..+-...-.. +-|...-..+...+...|+.++|.+.+-.+..+ |.. |...-..|+..+.-.|.-
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPA 288 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCC
Confidence 4444444433 236666677788888888888888777666543 333 445556666666555533
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.73 Score=50.81 Aligned_cols=65 Identities=12% Similarity=-0.037 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc---chHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 001645 793 DKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVP---LSYSLYIRALCRAGELEEALALLDEVKEE 857 (1038)
Q Consensus 793 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 857 (1038)
+...++.+..+|.+.|++++|...|+..++..+.+. .+|..+..+|.+.|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456667777777777777777777777777777665 34777777777777777777777777764
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.27 E-value=10 Score=41.59 Aligned_cols=207 Identities=17% Similarity=0.203 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc------chHHHHHHHHHHcC----CHhHHHHHHHHHHHcCCCCCHH
Q 001645 795 ELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVP------LSYSLYIRALCRAG----ELEEALALLDEVKEERSKLDEF 864 (1038)
Q Consensus 795 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~ 864 (1038)
.+|..++....+.++...|.+.+..+.-..+... .+-..+.+..|... +...=+.+|+...... .|..
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrq 376 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQ 376 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHH
Confidence 3566667777778888888888877776665443 22233444444211 2233344455544432 2222
Q ss_pred H-HHHHHHH---HHhcC-CHHHHHHHHHHHHHcCCCccHhhHHHHHH----HHHhc---CCHHHHHHHHHHHHHcCCCCC
Q 001645 865 V-FGSLIHG---LVQRG-QIEEALAKVETMKQAGIYPTVHVYTSFVV----HFFRE---KQVGRALEIFERMRQEGCEPT 932 (1038)
Q Consensus 865 t-~~~li~~---~~~~g-~~~~A~~~~~~m~~~g~~p~~~~y~~li~----~~~~~---g~~~~A~~~~~~m~~~g~~pd 932 (1038)
- -.-|+.+ +-+.| +-++|+++++.+.+-. .-|..+-|.+.. +|..+ ..+.+-+.+-+-+.+.|+.|-
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i 455 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI 455 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence 1 1112222 22334 4788888888887631 223333332221 22111 122333333333445677773
Q ss_pred ----HHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhcH
Q 001645 933 ----VVTYTALIQG--FANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINF 1006 (1038)
Q Consensus 933 ----~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 1006 (1038)
...-|.|.+| +...|++.++.-.-..+.+ +.|++.+|..++-++....+++||...+.++ +|+...+
T Consensus 456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ 528 (549)
T PF07079_consen 456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMR 528 (549)
T ss_pred cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhH
Confidence 3445566555 3467888888766665555 4568889999999999999999999988765 4666666
Q ss_pred HHHHH
Q 001645 1007 RTIFF 1011 (1038)
Q Consensus 1007 ~~l~~ 1011 (1038)
.+-++
T Consensus 529 dskvq 533 (549)
T PF07079_consen 529 DSKVQ 533 (549)
T ss_pred HHHHH
Confidence 55444
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.58 Score=42.51 Aligned_cols=51 Identities=14% Similarity=0.059 Sum_probs=32.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 001645 928 GCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIK-GPFPDFRTYSMFIGCL 978 (1038)
Q Consensus 928 g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~l~~~~ 978 (1038)
...|+..+..+++.+|+..|++..|+++++...+. ++..+...|..|+.=.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34566777777777777777777777777776654 4444556666665443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.00 E-value=8 Score=39.36 Aligned_cols=172 Identities=16% Similarity=0.128 Sum_probs=83.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcc---hHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------
Q 001645 806 EVGMLQLAKSCMDVLRKVGFTVPL---SYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQ------- 875 (1038)
Q Consensus 806 ~~g~~~~A~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~------- 875 (1038)
+.|++++|.+.|+.+..+.+..+. +.-.++-++-+.+++++|+..+++....-......-|...|.+++.
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~ 125 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDV 125 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcc
Confidence 456666666666666665554442 3345556667777777777777777665332223334444444442
Q ss_pred cCCHHHHHHHHHHHHH--cCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001645 876 RGQIEEALAKVETMKQ--AGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAW 953 (1038)
Q Consensus 876 ~g~~~~A~~~~~~m~~--~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~ 953 (1038)
..+...+.+-|..|.+ .. -||. .=...|......+... . ..-=..+.+-|.+.|.+..|.
T Consensus 126 ~rDq~~~~~A~~~f~~~i~r-yPnS-------------~Ya~dA~~~i~~~~d~---L-A~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 126 TRDQSAARAAFAAFKELVQR-YPNS-------------RYAPDAKARIVKLNDA---L-AGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred ccCHHHHHHHHHHHHHHHHH-CCCC-------------cchhhHHHHHHHHHHH---H-HHHHHHHHHHHHHhcChHHHH
Confidence 1233333333333322 00 1111 0001111111111000 0 000023455666777777777
Q ss_pred HHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001645 954 DVFYRMKIKGPF--PDFRTYSMFIGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 954 ~~~~~m~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
.-++.|.+.-+. -....+-.+..+|...|..++|...-+-+.
T Consensus 188 nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 188 NRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 777777765222 112344455667777777777776655444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.15 Score=36.38 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001645 935 TYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFI 975 (1038)
Q Consensus 935 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 975 (1038)
++..+..+|.+.|++++|+++|+++++..|. |+..|..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhh
Confidence 4556677777777777777777777777666 666665554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.92 Score=48.81 Aligned_cols=97 Identities=16% Similarity=0.145 Sum_probs=77.6
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001645 898 VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGC 977 (1038)
Q Consensus 898 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 977 (1038)
..+++.|.-+|.+.+++.+|++..++.++.+ ++|.-....=..+|...|.++.|+..|+++.+..|. |-.+-+-++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 4567778888999999999999999998864 567777777788999999999999999999998877 76777777777
Q ss_pred HHhcCChHH-HHHHHHHHHH
Q 001645 978 LCKVGKSEE-ALELLSEMTE 996 (1038)
Q Consensus 978 ~~~~g~~~~-A~~l~~~m~~ 996 (1038)
--+....++ ..++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 666555544 4788888874
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.55 Score=42.66 Aligned_cols=52 Identities=15% Similarity=0.094 Sum_probs=45.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCChhcHHHHHHHHh
Q 001645 963 GPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTE-SGIVPSNINFRTIFFGLN 1014 (1038)
Q Consensus 963 ~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~~~~~l~~~~~ 1014 (1038)
...|+..+..+++.+|+..|++..|+++++...+ .++.-+..+|..|++-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4668999999999999999999999999999875 577778999999998443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.64 E-value=1.3 Score=45.91 Aligned_cols=117 Identities=15% Similarity=0.028 Sum_probs=63.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHH
Q 001645 806 EVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDE----FVFGSLIHGLVQRGQIEE 881 (1038)
Q Consensus 806 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~ 881 (1038)
-.|+..+|...++++++.-|.+..+++..-+++...|+...-...++++... -.+|. +.-..+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 3466666666666666666666666666666666666666666666665543 12222 222223333445566666
Q ss_pred HHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001645 882 ALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERM 924 (1038)
Q Consensus 882 A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 924 (1038)
|.+.-++..+.+ +-|.-.-.++...+-..|+..++.++..+-
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 666555555443 344444445555555566666666554443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.37 Score=49.98 Aligned_cols=94 Identities=12% Similarity=0.136 Sum_probs=60.9
Q ss_pred HHHHHhhhCCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 180 RFFNWVKLREGFCHA--TETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMR 257 (1038)
Q Consensus 180 ~~f~~~~~~~~~~~~--~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 257 (1038)
.|+.|+..+...--. ..++..++..+...++++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.
T Consensus 136 ~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 136 RFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 466666543321111 2356666777777777777777777777665 6677777777777777777777777777766
Q ss_pred h-----CCCCCCHHHHHHHHHH
Q 001645 258 K-----YGFEPDAVAYKVLVRS 274 (1038)
Q Consensus 258 ~-----~g~~p~~~~~~~ll~~ 274 (1038)
+ .|+.|...+.......
T Consensus 215 ~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 215 KTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHhhhhcCCCccHHHHHHHHHH
Confidence 4 4666666655544443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.55 E-value=12 Score=40.06 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=78.9
Q ss_pred HHHhhccCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--h
Q 001645 167 VLKRCFKVPHLALRFFNWVKLREGFCHATETYNTMLTIA--GEAKELELLEELEREMEINSCAKNIKTWTILVSLYG--K 242 (1038)
Q Consensus 167 vl~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~li~~l--~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~--~ 242 (1038)
+++.+-.+|..+.+.|.-.++..|+ .+|-..+ .-.|+-..|+++-.+..+. +..|......|+.+-. -
T Consensus 61 lv~~iw~sP~t~~Ryfr~rKRdrgy-------qALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~ 132 (531)
T COG3898 61 LVRSIWESPYTARRYFRERKRDRGY-------QALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALL 132 (531)
T ss_pred HHHHHHhCcHHHHHHHHHHHhhhHH-------HHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHh
Confidence 3334445677777888777666553 3333322 3457777777766655422 2344444445544333 3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHH
Q 001645 243 AKLIGKALLVFEKMRKYGFEPDAVA--YKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVL 320 (1038)
Q Consensus 243 ~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 320 (1038)
.|+.+.|.+-|+.|... |.... ...|.-.--+.|..+.|..+-+...+.-.. =...+...+...+..|+++.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHH
Confidence 67777777777777642 22211 112222223456666666665555443221 1234555555556666666666
Q ss_pred HHHHHHHH
Q 001645 321 SIADDMVR 328 (1038)
Q Consensus 321 ~~~~~m~~ 328 (1038)
++.+.-..
T Consensus 209 kLvd~~~~ 216 (531)
T COG3898 209 KLVDAQRA 216 (531)
T ss_pred HHHHHHHH
Confidence 65555443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.49 Score=47.76 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCCcCCHHHHHHHHHHHHhcC
Q 001645 284 ALEFYKEMAQKEMVLDLSLYKIVMNCAAKLG 314 (1038)
Q Consensus 284 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 314 (1038)
+..++++|...|+.||..+-..|++++.+.+
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 4555555555555555555555555554444
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.38 E-value=2.2 Score=40.23 Aligned_cols=88 Identities=10% Similarity=-0.024 Sum_probs=49.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 001645 380 LCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGC 459 (1038)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 459 (1038)
+...|++++|..+|.-+...++.+..-|..|...+-..+++++|+..|......+. -|+..+-....++...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 34556666666666666655555555555666666666666666666655443321 23333334455566666666666
Q ss_pred HHHHHHHHC
Q 001645 460 ELYNEMLKR 468 (1038)
Q Consensus 460 ~l~~~m~~~ 468 (1038)
..|...++.
T Consensus 126 ~~f~~a~~~ 134 (165)
T PRK15331 126 QCFELVNER 134 (165)
T ss_pred HHHHHHHhC
Confidence 666666653
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.31 E-value=4.4 Score=37.85 Aligned_cols=125 Identities=12% Similarity=0.120 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhc
Q 001645 832 SLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFRE 911 (1038)
Q Consensus 832 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~ 911 (1038)
..++..+...+.......+++.+...+ ..+...++.++..|++.. .++.+..++. ..+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 344555555555555666666555554 244455555566555542 2233333331 12233333455555566
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001645 912 KQVGRALEIFERMRQEGCEPTVVTYTALIQGFANL-GKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLC 979 (1038)
Q Consensus 912 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 979 (1038)
+.++++..++.++.. . ...+..+... ++++.|.+++.+. .++..|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~-----~----~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN-----F----KDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC-----H----HHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 666666666655421 1 1112222222 5666666666652 14556666655554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.31 E-value=17 Score=40.76 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=34.8
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001645 833 LYIRALCRAGELEEALALLDEVKEERSK-LDEFVFGSLIHGLVQRGQIEEALAKVETMKQ 891 (1038)
Q Consensus 833 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 891 (1038)
.+....-+.|+.+||++.|.+|.+.... -.......|+.++...+.+.++..++.+-.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3444555667777777777777654211 1233455666677777777777666666543
|
The molecular function of this protein is uncertain. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.30 E-value=4.3 Score=46.77 Aligned_cols=95 Identities=16% Similarity=0.058 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCChhh
Q 001645 337 AYGCVLKSFCVSMRIREALEFIRNLKSK-EISMDR-----DHFETLVKGLCI----AGRISDALEIVDIMMRRNLVDGKI 406 (1038)
Q Consensus 337 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~-~~~p~~-----~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 406 (1038)
....++....-.||-+.+++++.+-.+. ++.-.. -.|...+..++. ....+.|.++++.+..+.|.+..-
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lf 269 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALF 269 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHH
Confidence 3455666666778888888877765442 222111 123333333322 234555666666666555544333
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHH
Q 001645 407 YGIIIGGYLRKNDLSKALVQFERMK 431 (1038)
Q Consensus 407 ~~~li~~~~~~g~~~~A~~~~~~m~ 431 (1038)
.-.-...+...|+.++|++.|++..
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAI 294 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 3333444455556666666555433
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.28 E-value=3 Score=46.26 Aligned_cols=162 Identities=9% Similarity=-0.006 Sum_probs=107.0
Q ss_pred chH--HHHHHHHHHcC-----CHhHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 001645 829 LSY--SLYIRALCRAG-----ELEEALALLDEVKE-ERSKLD-EFVFGSLIHGLVQ---------RGQIEEALAKVETMK 890 (1038)
Q Consensus 829 ~~~--~~li~~~~~~g-----~~~~A~~~~~~m~~-~g~~p~-~~t~~~li~~~~~---------~g~~~~A~~~~~~m~ 890 (1038)
..| ..++.+..... ..+.|+.+|.+... ....|+ ...|..+..++.. .....+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 55565555422 46788999999882 124555 3344444444332 224456777777777
Q ss_pred HcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 001645 891 QAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPT-VVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFR 969 (1038)
Q Consensus 891 ~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 969 (1038)
+.+ +-|......+..+....|+++.|...|++.... .|| ..+|......+.-+|+.++|.+.+++..+..|..-..
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 765 667777777888788888899999999998874 565 4566666667778899999999999987776553333
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHHH
Q 001645 970 -TYSMFIGCLCKVGKSEEALELLSEM 994 (1038)
Q Consensus 970 -~~~~l~~~~~~~g~~~~A~~l~~~m 994 (1038)
.....++.|+..+ .++|+.++-+-
T Consensus 409 ~~~~~~~~~~~~~~-~~~~~~~~~~~ 433 (458)
T PRK11906 409 VVIKECVDMYVPNP-LKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHHHcCCc-hhhhHHHHhhc
Confidence 3334445777665 57788876543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.14 E-value=1.7 Score=49.20 Aligned_cols=130 Identities=17% Similarity=0.225 Sum_probs=71.4
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHh
Q 001645 831 YSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFR 910 (1038)
Q Consensus 831 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~ 910 (1038)
.+.++..+-+.|..+.|+++.++-..+ .....+.|+++.|.++.++ .++...|..|.+...+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~r------------FeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHR------------FELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHH------------HHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHH------------hHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHH
Confidence 455666666666666666665433221 3344566666666654332 2355567777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 001645 911 EKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALEL 990 (1038)
Q Consensus 911 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l 990 (1038)
.|+++-|++.|.+..+ +..|+-.|.-.|+.+.-.++.+.....|- ++....++.-.|+.++..++
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHH
Confidence 7777777776666532 24455556666666666666665554431 34444555566666666666
Q ss_pred HHH
Q 001645 991 LSE 993 (1038)
Q Consensus 991 ~~~ 993 (1038)
+.+
T Consensus 425 L~~ 427 (443)
T PF04053_consen 425 LIE 427 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.10 E-value=11 Score=38.31 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001645 479 AMVAGHVRQDNLSEAWKVFKCMEDKGIRPT---RKSYSVFIKELCRVSRTNEILKVLNNMQA 537 (1038)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (1038)
.+.+.|.+.|.+..|..-+++|.+. .+-+ ...+-.|..+|...|-.++|.+.-+-+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 3456677777777777777777765 2112 22344555666666766666665555543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.8 Score=47.49 Aligned_cols=155 Identities=13% Similarity=0.006 Sum_probs=117.7
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCccHhhHHHHHHHHHhcCCHH
Q 001645 839 CRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQA---GIYPTVHVYTSFVVHFFREKQVG 915 (1038)
Q Consensus 839 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~y~~li~~~~~~g~~~ 915 (1038)
-..|+.-+|-..++++.+. .+.|...++..-.+|.-.|+.+.-...++++... +++-..+.-..+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3478888999999999886 6778899999999999999999999999888742 22222333334445556899999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 001645 916 RALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIK---GPFPDFRTYSMFIGCLCKVGKSEEALELLS 992 (1038)
Q Consensus 916 ~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~ 992 (1038)
+|++.-++..+.+ +.|...-.++...+--.|+..++.+++.+-... +.-.-...|-+..-.|...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999988764 567777788888888899999999998875432 111123456677777888899999999998
Q ss_pred HHH
Q 001645 993 EMT 995 (1038)
Q Consensus 993 ~m~ 995 (1038)
+=.
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 743
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.97 E-value=9.2 Score=38.33 Aligned_cols=86 Identities=17% Similarity=0.143 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Q 001645 232 TWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAA 311 (1038)
Q Consensus 232 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 311 (1038)
.|.....+|....++++|...+.+..+. .+-+...|+ ....++.|.-+.++|.+. .--+..|+--...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444445556666666666655555421 122222222 122345555555555442 112334555566677
Q ss_pred hcCChhHHHHHHHHHH
Q 001645 312 KLGDVDAVLSIADDMV 327 (1038)
Q Consensus 312 ~~g~~~~a~~~~~~m~ 327 (1038)
..|..+.|-..+++.-
T Consensus 103 E~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAA 118 (308)
T ss_pred HhCCcchHHHHHHHHH
Confidence 7777776666665543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.94 E-value=8 Score=40.12 Aligned_cols=52 Identities=21% Similarity=0.161 Sum_probs=29.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHH
Q 001645 804 LCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVK 855 (1038)
Q Consensus 804 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 855 (1038)
....|++.+|...|+......+.....--.++..|...|+.+.|..++..+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 3445556666666666655555554455555566666666666666665543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.58 E-value=8.1 Score=36.00 Aligned_cols=84 Identities=12% Similarity=0.088 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 001645 799 TYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQ 878 (1038)
Q Consensus 799 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 878 (1038)
.++..+.+.+........++.+...+..++..++.++..|++.+ ..+.++.++. ..+.+....++..|.+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 34455555555555555555555555444445555555555442 2233333331 1223333345555555555
Q ss_pred HHHHHHHHHHH
Q 001645 879 IEEALAKVETM 889 (1038)
Q Consensus 879 ~~~A~~~~~~m 889 (1038)
++++..++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.2 Score=33.32 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=25.7
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 001645 956 FYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEAL 988 (1038)
Q Consensus 956 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 988 (1038)
|++.++..|. ++.+|+.+..+|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 5666777777 8888888888888888888875
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.17 E-value=5.2 Score=42.63 Aligned_cols=138 Identities=14% Similarity=0.279 Sum_probs=70.6
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cC----ChHHHHHHHHHHHHcCC---CCChhhHHHHHHHHHhhcCC
Q 001645 703 FKHMRNLFYEMRRNGYLITPDTWTIMMMQYGR--AG----LTEMAMRVFEDMKANGC---NPSGSTYKYLIISLSGRKGR 773 (1038)
Q Consensus 703 ~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~g~---~p~~~~~~~ll~~~~~~~~~ 773 (1038)
+.....+++.|.+.|+.-+..+|-+....... .. ...+|..+|+.|++... .++..++..++..-......
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~ 157 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHH
Confidence 34455666777777777666555442222221 11 24567777777777632 35556666665442211111
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcC---CHhHHHHH
Q 001645 774 KVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAG---ELEEALAL 850 (1038)
Q Consensus 774 ~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~ 850 (1038)
-.+.+..+|+.+.+.|+..... .-+.+-+-+++... ...++.++
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~---------------------------------LQ~LS~iLaL~~~~~~~~v~r~~~l 204 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGND---------------------------------LQFLSHILALSEGDDQEKVARVIEL 204 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcH---------------------------------HHHHHHHHHhccccchHHHHHHHHH
Confidence 2234445555555555444321 11111122222111 14577888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHH
Q 001645 851 LDEVKEERSKLDEFVFGSLIHGL 873 (1038)
Q Consensus 851 ~~~m~~~g~~p~~~t~~~li~~~ 873 (1038)
++.+.+.|+++....|..+.-..
T Consensus 205 ~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 205 YNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHcCCccccccccHHHHHH
Confidence 88888888888777776554433
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.96 E-value=1.2 Score=46.19 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=47.9
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 001645 898 VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKI-----KGPFPDFRTYS 972 (1038)
Q Consensus 898 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~ 972 (1038)
..++..++..+...|+.+.+...++++.+.. +-|...|..++.+|.+.|+...|++.|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4556666666666666666666666666542 33566666666666666666666666666554 35555555554
Q ss_pred HHHHH
Q 001645 973 MFIGC 977 (1038)
Q Consensus 973 ~l~~~ 977 (1038)
.+..+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44333
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.82 E-value=3.6 Score=42.18 Aligned_cols=96 Identities=15% Similarity=0.223 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHH
Q 001645 372 HFETLVKGLCIAGRISDALEIVDIMMRRNLVD---GKIYGIIIGGYLRKNDLSKALVQFERMKES-GYLP-MASTYTELM 446 (1038)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p-~~~t~~~ll 446 (1038)
.|+.-+.. .+.|++..|...|....+..+.+ ..++.-|...+...|+++.|..+|..+.+. +-.| -+..+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 56666654 46677888888888888877764 345666777777788888887777777664 1112 235566666
Q ss_pred HHHHhcCChhHHHHHHHHHHHC
Q 001645 447 QHLFKLNEYKKGCELYNEMLKR 468 (1038)
Q Consensus 447 ~~~~~~~~~~~a~~l~~~m~~~ 468 (1038)
.+..+.|+.++|+..|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6677777777777777777765
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.69 E-value=2.1 Score=43.83 Aligned_cols=94 Identities=16% Similarity=0.174 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHH
Q 001645 901 YTSFVVHFFREKQVGRALEIFERMRQEGCEPT---VVTYTALIQGFANLGKVAEAWDVFYRMKIKGPF--PDFRTYSMFI 975 (1038)
Q Consensus 901 y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~l~ 975 (1038)
|+.-+.. .+.|++..|.+-|...++.. +-+ ...+..|..++...|++++|..+|..+.+..+. .-+.++.-|.
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4443333 23445666666666655531 111 222344566666666666666666666554222 1234555666
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 001645 976 GCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 976 ~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
.+..+.|+.++|...|++..+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 666666666666666666654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.67 E-value=4.3 Score=46.05 Aligned_cols=101 Identities=17% Similarity=0.083 Sum_probs=41.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 001645 206 GEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIAL 285 (1038)
Q Consensus 206 ~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 285 (1038)
.-.++++.+.++.+.-.-.. ..+..-.+.+++-+-+.|..+.|+.+-. |.. .-.....+.|+.+.|.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIAL 338 (443)
T ss_dssp HHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHH
T ss_pred HHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHH
Confidence 34456666555554111000 1123445555555555666666655522 221 1223334555555555
Q ss_pred HHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 001645 286 EFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADD 325 (1038)
Q Consensus 286 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 325 (1038)
++.++. .+...|..|.....+.|+++-|++.|.+
T Consensus 339 ~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 339 EIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 543221 2444555555555555555555555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=91.59 E-value=6.6 Score=35.23 Aligned_cols=60 Identities=12% Similarity=0.135 Sum_probs=29.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001645 869 LIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGC 929 (1038)
Q Consensus 869 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~ 929 (1038)
.++.+.+.|+-+.-.+++..+.+.+ .++....-.+..+|.+.|+..++.+++.+..++|+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444555555555555555554322 44555555555666666666666666666655553
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.56 E-value=16 Score=40.85 Aligned_cols=79 Identities=18% Similarity=0.148 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 001645 845 EEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERM 924 (1038)
Q Consensus 845 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 924 (1038)
.+|.++-++..+.+ +-|......+..+....++.+.|..+|++....+ +-...+|......+.-.|+.++|.+.+++.
T Consensus 321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444432 2344444444444444455555555555554432 122233333333344455555555555554
Q ss_pred H
Q 001645 925 R 925 (1038)
Q Consensus 925 ~ 925 (1038)
.
T Consensus 399 l 399 (458)
T PRK11906 399 L 399 (458)
T ss_pred h
Confidence 4
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.36 E-value=5 Score=35.80 Aligned_cols=91 Identities=24% Similarity=0.117 Sum_probs=63.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCH
Q 001645 803 CLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEF---VFGSLIHGLVQRGQI 879 (1038)
Q Consensus 803 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~li~~~~~~g~~ 879 (1038)
++...|+++.|.+.|.+....-|..+..||.-..++.-.|+.++|++=+++..+..-..+.. .|.--...|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 45667777888888877777777777888888888888888888888888877742222222 233333446667777
Q ss_pred HHHHHHHHHHHHcC
Q 001645 880 EEALAKVETMKQAG 893 (1038)
Q Consensus 880 ~~A~~~~~~m~~~g 893 (1038)
+.|..-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 88877777776655
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.32 E-value=1.4 Score=51.47 Aligned_cols=143 Identities=17% Similarity=0.163 Sum_probs=74.4
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCC
Q 001645 834 YIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQ 913 (1038)
Q Consensus 834 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~ 913 (1038)
..+.+.+.|++++|...|-+.... ++|. .+|.-|....++.+-..+++.+.+.|+ .+...-..|+.+|.+.++
T Consensus 374 Ygd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd 446 (933)
T KOG2114|consen 374 YGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKD 446 (933)
T ss_pred HHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcc
Confidence 344455566777776666555443 3332 234445555556666666666666663 445555666777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 001645 914 VGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSE 993 (1038)
Q Consensus 914 ~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~ 993 (1038)
.++-.++.+... .|.- ..-....+..|.+.+-.++|..+..+... .... +-..+-..|++++|++.++.
T Consensus 447 ~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~v---l~ille~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 447 VEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWV---LDILLEDLHNYEEALRYISS 515 (933)
T ss_pred hHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHH---HHHHHHHhcCHHHHHHHHhc
Confidence 666555554433 1211 11223445555566666666655554321 1222 22234445666666666554
Q ss_pred H
Q 001645 994 M 994 (1038)
Q Consensus 994 m 994 (1038)
|
T Consensus 516 l 516 (933)
T KOG2114|consen 516 L 516 (933)
T ss_pred C
Confidence 4
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.26 E-value=26 Score=38.41 Aligned_cols=135 Identities=17% Similarity=0.271 Sum_probs=101.0
Q ss_pred CcchHHHHHHHHHHcCCHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhH-HHH
Q 001645 827 VPLSYSLYIRALCRAGELEEALALLDEVKEER-SKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVY-TSF 904 (1038)
Q Consensus 827 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y-~~l 904 (1038)
...+|..++++..+..-++.|..+|.++.+.| +.+++..+++++.-++. |+..-|..+|+.=... -||...| +-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 35678888888888888999999999999888 67888888888887764 6677888888764443 3444443 355
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001645 905 VVHFFREKQVGRALEIFERMRQEGCEPT--VVTYTALIQGFANLGKVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 905 i~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 965 (1038)
+..+.+.++-+.|..+|+...++ +..+ ...|..+|.--...|+...+..+=++|.+.-|.
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 66677888888999999976653 2333 567888888888889888888888888775433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.21 E-value=9.7 Score=40.34 Aligned_cols=165 Identities=16% Similarity=0.124 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CccHhh
Q 001645 830 SYSLYIRALCRAGELEEALALLDEVKEE-RSKL---DEFVFGSLIHGLVQRGQIEEALAKVETMKQAGI-----YPTVHV 900 (1038)
Q Consensus 830 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~~ 900 (1038)
+|-.+.+++-+--++.+++.+-..-... |..| --....+|..++.-.+.++++++.|+...+... -....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4555555665555566666655544331 2222 112334456666667777888888877665211 112356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHH----cCCCC-
Q 001645 901 YTSFVVHFFREKQVGRALEIFERMRQE----GCEPTVVTYTA-----LIQGFANLGKVAEAWDVFYRMKI----KGPFP- 966 (1038)
Q Consensus 901 y~~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~----~~~~~- 966 (1038)
|..|...|.+..++++|.-+..+..+. ++.--..-|.. |.-++...|+.-.|.+.-++..+ .|-.+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 777788888888888877766665432 22222223332 33455566776666666555443 23221
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001645 967 DFRTYSMFIGCLCKVGKSEEALELLSEM 994 (1038)
Q Consensus 967 ~~~~~~~l~~~~~~~g~~~~A~~l~~~m 994 (1038)
-....-.+.++|...|+.|.|+.-|++.
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1234456777888888877777766653
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.09 E-value=19 Score=36.40 Aligned_cols=225 Identities=19% Similarity=0.146 Sum_probs=149.2
Q ss_pred CChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhhcCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHH
Q 001645 736 GLTEMAMRVFEDMKANGCNP-SGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNA-GHIPDKELVETYLDCLCEVGMLQLA 813 (1038)
Q Consensus 736 g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~-~~~~d~~~~~~li~~~~~~g~~~~A 813 (1038)
+....+...+.......... ....+......+. ..+.+..+...+...... ........+......+...+++..+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALL--KLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEA 114 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHH--HcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHH
Confidence 44555555555555442221 1223333333333 334677777777766653 2334455666667777778888888
Q ss_pred HHHHHHHHHcCCCCcchHHHHHH-HHHHcCCHhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 814 KSCMDVLRKVGFTVPLSYSLYIR-ALCRAGELEEALALLDEVKEERS--KLDEFVFGSLIHGLVQRGQIEEALAKVETMK 890 (1038)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 890 (1038)
.+.+................... .+...|++++|...+++...... ......+......+...++.++|...+....
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 115 LELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 88888888766555444444444 78899999999999999855211 1233444445555777899999999999988
Q ss_pred HcCCCc-cHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001645 891 QAGIYP-TVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPT-VVTYTALIQGFANLGKVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 891 ~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 965 (1038)
... .. ....+..+...+...+++++|...+...... .|+ ...+..+...+...|..+++...+++.....+.
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 753 33 4778888889999999999999999999875 344 445555555555777899999999988876543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.06 E-value=4 Score=44.16 Aligned_cols=61 Identities=11% Similarity=0.004 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 001645 372 HFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKE 432 (1038)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 432 (1038)
++..|.-+|.+.+++..|.+..++....++.+.....--..+|+..|+++.|...|+++.+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555544444455555555555555555555554
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.99 E-value=4.9 Score=37.07 Aligned_cols=53 Identities=13% Similarity=0.230 Sum_probs=28.6
Q ss_pred HHcCCHHHHHHHHHHHHHcCCC---ChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 001645 381 CIAGRISDALEIVDIMMRRNLV---DGKIYGIIIGGYLRKNDLSKALVQFERMKES 433 (1038)
Q Consensus 381 ~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 433 (1038)
.+.|++++|.+.|+.+..+.+. ...+--.++.+|.+.+++++|+..+++..+.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3455555555555555555443 2234445555555566666665555555554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.61 E-value=3 Score=37.18 Aligned_cols=92 Identities=14% Similarity=0.086 Sum_probs=51.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCC
Q 001645 872 GLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVV---TYTALIQGFANLGK 948 (1038)
Q Consensus 872 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~---~~~~li~~~~~~g~ 948 (1038)
++...|+++.|++.|.+.... .+.....||.=..++.-.|+.++|++=+++.++..-.-... .|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 455666777777776666543 24455666666666666666666666666666531011111 12222334555666
Q ss_pred HHHHHHHHHHHHHcCC
Q 001645 949 VAEAWDVFYRMKIKGP 964 (1038)
Q Consensus 949 ~~~A~~~~~~m~~~~~ 964 (1038)
.+.|..=|+...+.|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 6666666666666553
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.56 E-value=5.2 Score=39.18 Aligned_cols=201 Identities=17% Similarity=0.166 Sum_probs=117.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCCHHH
Q 001645 804 LCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIH--GLVQRGQIEE 881 (1038)
Q Consensus 804 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~--~~~~~g~~~~ 881 (1038)
|-..|-..-|+--|.......|..+..||-|.-.+...|+++.|.+.|+...+. .|. .-|..+=+ ++.-.|+++-
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~-y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPT-YNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCc-chHHHhccceeeeecCchHh
Confidence 445566777777788888888888889999999999999999999999999885 332 12222222 2334688888
Q ss_pred HHHHHHHHHHcC-CCccHhhHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001645 882 ALAKVETMKQAG-IYPTVHVYTSFVVHFFREKQVGRALEIF-ERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRM 959 (1038)
Q Consensus 882 A~~~~~~m~~~g-~~p~~~~y~~li~~~~~~g~~~~A~~~~-~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m 959 (1038)
|.+-|...-+.. -.|=...|-.|+.. .-+..+|..-+ ++.. ..|..-|...|-.|.- |++++ ..+++++
T Consensus 152 Aq~d~~~fYQ~D~~DPfR~LWLYl~E~---k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yL-gkiS~-e~l~~~~ 222 (297)
T COG4785 152 AQDDLLAFYQDDPNDPFRSLWLYLNEQ---KLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYL-GKISE-ETLMERL 222 (297)
T ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHh---hCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHH-hhccH-HHHHHHH
Confidence 887777666533 12333444433322 22444554432 3332 3344444443333321 22211 2233333
Q ss_pred HHcCCC------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhcHHHHHHHHhccC
Q 001645 960 KIKGPF------PDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRTIFFGLNRED 1017 (1038)
Q Consensus 960 ~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l~~~~~~~g 1017 (1038)
....-. .=..||.-|.+-|...|+.++|..+|+-....++ -+.+.++--+-.+.+-|
T Consensus 223 ~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV-ynfVE~RyA~~EL~~l~ 285 (297)
T COG4785 223 KADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV-YNFVEHRYALLELSLLG 285 (297)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHhc
Confidence 321111 0136788899999999999999999988765432 34455554444444433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.34 E-value=0.85 Score=32.49 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHH
Q 001645 372 HFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGII 410 (1038)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 410 (1038)
++..+...|...|++++|.++|++..+..+.+...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 455666777777777777777777777776665555544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.01 E-value=13 Score=35.45 Aligned_cols=52 Identities=15% Similarity=0.310 Sum_probs=27.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHhhHHH
Q 001645 848 LALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTS 903 (1038)
Q Consensus 848 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~ 903 (1038)
++++..+.+.|++|+...|..++..+.+.|+... +..+.+.++-+|......
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~ 65 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLAC 65 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHH
Confidence 4445555555666666666666666666665433 333334444444444333
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.92 E-value=13 Score=34.35 Aligned_cols=76 Identities=12% Similarity=0.105 Sum_probs=58.7
Q ss_pred HHHHhcCCChhhHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 001645 694 IKTAGRGKDFKHMRNLFYEMRRNGYL--ITPDTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSG 769 (1038)
Q Consensus 694 i~~~~~~~~~~~a~~l~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 769 (1038)
.....+.|++++|.+.|+.+..+-+. .....--.++.+|-+.+++++|...+++.++....-..+-|...+.+++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 34456789999999999999886432 24456667889999999999999999999987554445667777777763
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.86 E-value=18 Score=34.27 Aligned_cols=131 Identities=15% Similarity=0.128 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--hhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH-HHHHH--H
Q 001645 372 HFETLVKGLCIAGRISDALEIVDIMMRRNLVD--GKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMAS-TYTEL--M 446 (1038)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l--l 446 (1038)
.|..-+. +...+..++|+.-|..+.+.+..+ .-...-+.......|+...|...|++.-.....|-.. -..-| .
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 3443333 345667777777777777766653 2223334455566777777777777776654444332 11111 1
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001645 447 QHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDK 503 (1038)
Q Consensus 447 ~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 503 (1038)
-.+...|.++......+-+...+-+.....-.+|.-+-.+.|++..|.+.|..+...
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 123455666666666655554443333444555665666677777777777766553
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=89.67 E-value=15 Score=33.08 Aligned_cols=61 Identities=21% Similarity=0.238 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 001645 938 ALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGI 999 (1038)
Q Consensus 938 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~ 999 (1038)
..++...++|+-+.-.++++.+.. +-.+++.....+..+|.+.|+..+|-+++++.-++|+
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 334445555555555555555443 2233455555555555555555555555555555554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=89.31 E-value=68 Score=40.08 Aligned_cols=41 Identities=20% Similarity=0.198 Sum_probs=24.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHh
Q 001645 216 ELEREMEINSCAKNIKTWTILVSLYGKAK--LIGKALLVFEKMRK 258 (1038)
Q Consensus 216 ~l~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~ 258 (1038)
+++.....+. .|+ .-.-.+|.+|++.+ .++.|+....+...
T Consensus 778 ~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 778 DAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 3333333333 444 44556778888877 67777777766664
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=89.25 E-value=8.7 Score=40.67 Aligned_cols=192 Identities=15% Similarity=0.066 Sum_probs=122.8
Q ss_pred chHHHHHHHHHHcCCHhHHHHHHHHHHHc--CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCc---cHh
Q 001645 829 LSYSLYIRALCRAGELEEALALLDEVKEE--RSK---LDEFVFGSLIHGLVQRGQIEEALAKVETMKQ-AGIYP---TVH 899 (1038)
Q Consensus 829 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p---~~~ 899 (1038)
.++..+..+.+..|.+++++..--.-.+. ... .-...|-.+.+++.+.-++.+++.+-..-.. .|..| .-.
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 45666777777778777766542221110 001 1123455555666666666666665544332 23333 113
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCH--
Q 001645 900 VYTSFVVHFFREKQVGRALEIFERMRQE---GCEP--TVVTYTALIQGFANLGKVAEAWDVFYRMKIK----GPFPDF-- 968 (1038)
Q Consensus 900 ~y~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p--d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~-- 968 (1038)
..-++..++.-.+.++++++.|+....- .-.| ...+|..|...|.+..++++|.-+..+..+. ++. |.
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~ 202 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSL 202 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhH
Confidence 3345667777778899999999988752 1112 3567899999999999999998877766543 333 32
Q ss_pred ----HHHHHHHHHHHhcCChHHHHHHHHHHH----HCCCCC-ChhcHHHHHHHHhccCChhh
Q 001645 969 ----RTYSMFIGCLCKVGKSEEALELLSEMT----ESGIVP-SNINFRTIFFGLNREDNLYQ 1021 (1038)
Q Consensus 969 ----~~~~~l~~~~~~~g~~~~A~~l~~~m~----~~g~~p-~~~~~~~l~~~~~~~g~~~~ 1021 (1038)
.+..+|.-+|...|..-+|.+..++.. +.|-.| -+.....+.+.|...|+.|-
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~ 264 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLER 264 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhH
Confidence 234567788999999999999988854 455555 35667778888988888876
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=89.24 E-value=33 Score=36.44 Aligned_cols=162 Identities=10% Similarity=0.086 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001645 372 HFETLVKGLCIAGRIS---DALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQH 448 (1038)
Q Consensus 372 ~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 448 (1038)
++..++.+|...+..+ +|..+++.+....+....++-.-+..+.+.++.+.+.+.+.+|...- .-....+..++..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHHH
Confidence 4455566666555543 34444444443333334445455555555666666777776666552 1122233333333
Q ss_pred H---HhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHH-HH--hcCC------HHHHHHHHHHHHh-CCCCCCHHHHH
Q 001645 449 L---FKLNEYKKGCELYNEMLKRGIQPDSV--AVTAMVAG-HV--RQDN------LSEAWKVFKCMED-KGIRPTRKSYS 513 (1038)
Q Consensus 449 ~---~~~~~~~~a~~l~~~m~~~g~~p~~~--~~~~li~~-~~--~~g~------~~~A~~~~~~m~~-~g~~p~~~~~~ 513 (1038)
+ .. .....+...+..++..-+.|... .-..++.. +. +.++ ++....+++.+.. .+.+.+..+-.
T Consensus 165 i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 165 IKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 3 22 22344555555554443343332 11111111 11 1111 3444444543322 12233444433
Q ss_pred HHH-------HHHHhcCCHHHHHHHHHHH
Q 001645 514 VFI-------KELCRVSRTNEILKVLNNM 535 (1038)
Q Consensus 514 ~li-------~~~~~~g~~~~A~~~~~~m 535 (1038)
++. ..+.+.++++.|.++|+--
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 322 3356788999999998754
|
It is also involved in sporulation []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=89.08 E-value=14 Score=41.41 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=38.1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001645 898 VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEP--TVVTYTALIQGFANLGKVAEAWDVFYRMK 960 (1038)
Q Consensus 898 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~~~~~li~~~~~~g~~~~A~~~~~~m~ 960 (1038)
..+-.-|..++.+.|+.++|++.+.+|.+.. ++ +......|+.++...+.+.++..++.+--
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3333445666667777777777777776431 12 22345566777777777777777777654
|
The molecular function of this protein is uncertain. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.87 E-value=36 Score=36.37 Aligned_cols=51 Identities=20% Similarity=0.158 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHHcCCC
Q 001645 352 REALEFIRNLKSKEISMDRDHFETLVKGLCI--AG----RISDALEIVDIMMRRNLV 402 (1038)
Q Consensus 352 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~~~~~ 402 (1038)
++.+.+++.|.+.|+.-+..+|-+....... .. ...+|..+++.|.+..+.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~f 135 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPF 135 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcc
Confidence 3445566667777776555554432222222 11 234566666666665543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.33 E-value=20 Score=42.44 Aligned_cols=82 Identities=21% Similarity=0.214 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHH-HHHHHH-HHhcCCHHHHHHHHHHHHH-------cCCCCcchHHHHHHHHHHcC---
Q 001645 775 VDHAIKIFQEMVNAGHIPDKELV-ETYLDC-LCEVGMLQLAKSCMDVLRK-------VGFTVPLSYSLYIRALCRAG--- 842 (1038)
Q Consensus 775 ~~~A~~~~~~m~~~~~~~d~~~~-~~li~~-~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g--- 842 (1038)
...|.++++...+.|..-..... .....+ +....+.+.|...+....+ .+ .+.+..-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCc
Confidence 45666677666665532211110 111112 3344455666666655544 22 2334444444444432
Q ss_pred --CHhHHHHHHHHHHHcC
Q 001645 843 --ELEEALALLDEVKEER 858 (1038)
Q Consensus 843 --~~~~A~~~~~~m~~~g 858 (1038)
+.+.|+.++.+..+.|
T Consensus 306 ~~d~~~A~~~~~~aA~~g 323 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG 323 (552)
T ss_pred cccHHHHHHHHHHHHhcC
Confidence 3344555555555543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.18 E-value=1 Score=30.38 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 001645 970 TYSMFIGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 970 ~~~~l~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
+|+.|..+|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888854
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=88.18 E-value=25 Score=36.70 Aligned_cols=59 Identities=7% Similarity=0.133 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhHHH
Q 001645 227 AKNIKTWTILVSLYGKAKLIGKALLVFEKMRKY-GFEPDAVAYKVLVRSLCNAGKGDIAL 285 (1038)
Q Consensus 227 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~A~ 285 (1038)
.++..+...+|..+++.+++.+-.++++..... +..-|...|...|......|+..-..
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ 258 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMR 258 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHH
Confidence 344444444555555555555555544444332 33344444555555555555544333
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.93 E-value=15 Score=34.69 Aligned_cols=101 Identities=12% Similarity=-0.044 Sum_probs=57.2
Q ss_pred HHHHHHHHHH---HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001645 196 ETYNTMLTIA---GEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLV 272 (1038)
Q Consensus 196 ~~~~~li~~l---~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 272 (1038)
...+.||.++ .+.++.++++.+++-+.-.. |.....-..-...+.+.|+|.+|+.+|+.+.+. .|.......|+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALl 84 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHH
Confidence 3444455444 35678888888888887643 333333333344567888888888888888765 34444445555
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCcCC
Q 001645 273 RSLCNAGKGDIALEFYKEMAQKEMVLD 299 (1038)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~m~~~~~~p~ 299 (1038)
..|....+-..=..+-+++.+.+-.|+
T Consensus 85 A~CL~~~~D~~Wr~~A~evle~~~d~~ 111 (160)
T PF09613_consen 85 ALCLYALGDPSWRRYADEVLESGADPD 111 (160)
T ss_pred HHHHHHcCChHHHHHHHHHHhcCCChH
Confidence 555544332222333344555544433
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=87.56 E-value=39 Score=40.58 Aligned_cols=63 Identities=13% Similarity=0.207 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhCC
Q 001645 476 AVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSR-------TNEILKVLNNMQASK 539 (1038)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~ 539 (1038)
...++|-.+.++|++++|.++..+.... .......+...+..|....+ -+....-|++.....
T Consensus 113 p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 113 PIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp EHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 3455667777888888888887544432 23344556666666665422 234445555554443
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=87.27 E-value=76 Score=38.24 Aligned_cols=191 Identities=13% Similarity=0.072 Sum_probs=91.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC---------cchHHHHHHHHHHcCCHhHHHHHHH--------HHHHcCCCCCHHHH
Q 001645 804 LCEVGMLQLAKSCMDVLRKVGFTV---------PLSYSLYIRALCRAGELEEALALLD--------EVKEERSKLDEFVF 866 (1038)
Q Consensus 804 ~~~~g~~~~A~~~~~~~~~~~~~~---------~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~g~~p~~~t~ 866 (1038)
.+-.|++..|...+..+.+..... +..+....-.+...|+.+.|+..|. .....+...+...+
T Consensus 371 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~il 450 (608)
T PF10345_consen 371 NFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYIL 450 (608)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHH
Confidence 345578888888888777543211 1222333333455788999999997 34444444444444
Q ss_pred HHH----HHHHHhcCCHHH--HHHHHHHHHHc-CCCc--cHhhHHHH-HHHHHhcCC--HHHHHHHHHHHHHc---CCCC
Q 001645 867 GSL----IHGLVQRGQIEE--ALAKVETMKQA-GIYP--TVHVYTSF-VVHFFREKQ--VGRALEIFERMRQE---GCEP 931 (1038)
Q Consensus 867 ~~l----i~~~~~~g~~~~--A~~~~~~m~~~-g~~p--~~~~y~~l-i~~~~~~g~--~~~A~~~~~~m~~~---g~~p 931 (1038)
..+ |.-+......++ +.++++.+... .-.| +..++..+ +.++...-. ..++...+.+-.+. ....
T Consensus 451 a~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n 530 (608)
T PF10345_consen 451 AALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGN 530 (608)
T ss_pred HHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhcc
Confidence 332 111222222333 66666666541 1122 22333333 333322111 12333333332221 1111
Q ss_pred C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHH-----HHHHHHHHhcCChHHHHHHHHHHH
Q 001645 932 T---VVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFP---DFRTY-----SMFIGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 932 d---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~-----~~l~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
+ ..+++.|..-+. .|+..+..++.........+. ....| ..+.+.|...|+.++|.+...+..
T Consensus 531 ~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 531 SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 2 223333333333 577777666655543321111 33445 344555777888888888877654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=86.76 E-value=59 Score=36.50 Aligned_cols=185 Identities=16% Similarity=0.167 Sum_probs=111.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001645 193 HATETYNTMLTIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLV 272 (1038)
Q Consensus 193 ~~~~~~~~li~~l~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 272 (1038)
.|....-+++++++.+....-++.+..+|...| -+-..|..++..|..+ ..+.-..+|+++.+..+. |++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 466667778888888888888888888887754 5667777888888777 556677777777765422 333323333
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 001645 273 RSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIR 352 (1038)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 352 (1038)
.-| ..++...+..+|.....+=+ -..+.....++|.++... . ..+.+
T Consensus 140 ~~y-Ekik~sk~a~~f~Ka~yrfI---------------~~~q~~~i~evWeKL~~~--i---------------~dD~D 186 (711)
T COG1747 140 DKY-EKIKKSKAAEFFGKALYRFI---------------PRRQNAAIKEVWEKLPEL--I---------------GDDKD 186 (711)
T ss_pred HHH-HHhchhhHHHHHHHHHHHhc---------------chhhhhhHHHHHHHHHHh--c---------------cccHH
Confidence 333 33666666666666544311 122223334445444331 0 13444
Q ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 001645 353 EALEFIRNLKSK-EISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGY 414 (1038)
Q Consensus 353 ~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 414 (1038)
..+.+...+... |...-...+.-+-.-|....++++|.+++..+.+.+..+..+...+|..+
T Consensus 187 ~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 187 FFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 445554444432 33333455666667788888888888888888888777766655555543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=86.60 E-value=8.9 Score=37.43 Aligned_cols=97 Identities=13% Similarity=0.074 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHH--H
Q 001645 899 HVYTSFVVHFFREKQVGRALEIFERMRQEGCEPT--VVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFP-DFRTYS--M 973 (1038)
Q Consensus 899 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~--~ 973 (1038)
..+..+.+.|++.|+.+.|.+.|.++.+....+. ...+-.+|......|++..+...+.++...--.. |...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4566677777777777777777777776533333 3345566777777777777777776665431111 222211 1
Q ss_pred H--HHHHHhcCChHHHHHHHHHHH
Q 001645 974 F--IGCLCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 974 l--~~~~~~~g~~~~A~~l~~~m~ 995 (1038)
. .-.+...|++.+|.++|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 1 222345788888888876664
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.01 E-value=22 Score=33.03 Aligned_cols=64 Identities=3% Similarity=-0.101 Sum_probs=41.8
Q ss_pred HHHHHHHHHH---HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001645 196 ETYNTMLTIA---GEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYG 260 (1038)
Q Consensus 196 ~~~~~li~~l---~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 260 (1038)
...+.||+++ ....++++++.+++.|.-.. |.....-..-...+...|+|++|+++|+++.+.+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3444455444 34688888888888887643 2223333333445678899999999999988764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=85.37 E-value=0.79 Score=30.48 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=20.5
Q ss_pred HHHHHHcCCCCcchHHHHHHHHHHcCCHhHHH
Q 001645 817 MDVLRKVGFTVPLSYSLYIRALCRAGELEEAL 848 (1038)
Q Consensus 817 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 848 (1038)
+++.++..|.++.+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34455556666666777777777777776664
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.04 E-value=67 Score=35.49 Aligned_cols=85 Identities=11% Similarity=0.204 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCcCCHHHHHHH
Q 001645 227 AKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIV 306 (1038)
Q Consensus 227 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 306 (1038)
|-|..+|-.||.-|...+..++-.+++++|..- ++--..+|...+++=....+++.++.+|.+.....+ +...|...
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHH
Confidence 667778888888888888888888888888631 122345677777776777788888888877766543 45566666
Q ss_pred HHHHHhcC
Q 001645 307 MNCAAKLG 314 (1038)
Q Consensus 307 i~~~~~~g 314 (1038)
+..-.+.+
T Consensus 116 l~YIRr~n 123 (660)
T COG5107 116 LEYIRRVN 123 (660)
T ss_pred HHHHHhhC
Confidence 65544443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.51 E-value=38 Score=32.24 Aligned_cols=93 Identities=17% Similarity=0.228 Sum_probs=49.9
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHH-HHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCccHhhHHHHHHHHHhc
Q 001645 835 IRALCRAGELEEALALLDEVKEERSKLDEF-VFGSLIH--GLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFRE 911 (1038)
Q Consensus 835 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~y~~li~~~~~~ 911 (1038)
.......|+..+|...|+++......|-.. -..-|=. .+...|.+++.....+-+-..+-+.....-..|.-+-.+.
T Consensus 101 at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~ka 180 (221)
T COG4649 101 ATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKA 180 (221)
T ss_pred HHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhc
Confidence 334556677777777777776643333222 1111111 2334566666666555554444333444445555566666
Q ss_pred CCHHHHHHHHHHHHHc
Q 001645 912 KQVGRALEIFERMRQE 927 (1038)
Q Consensus 912 g~~~~A~~~~~~m~~~ 927 (1038)
|++.+|.+.|+.+.+.
T Consensus 181 gd~a~A~~~F~qia~D 196 (221)
T COG4649 181 GDFAKAKSWFVQIAND 196 (221)
T ss_pred cchHHHHHHHHHHHcc
Confidence 6666666666666543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.21 E-value=13 Score=35.97 Aligned_cols=92 Identities=17% Similarity=0.231 Sum_probs=44.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcc-----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 001645 871 HGLVQRGQIEEALAKVETMKQAGIYPT-----VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPT-VVTYTALIQGFA 944 (1038)
Q Consensus 871 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~ 944 (1038)
+-+.+.|++++|..-|......- ++. .+.|..=..++.+.+.++.|+.-..+.++.+ |+ ....-.-..+|-
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHH
Confidence 33566666666666666665531 221 1223333344555555555555555554432 21 111112233455
Q ss_pred hcCCHHHHHHHHHHHHHcCCC
Q 001645 945 NLGKVAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 945 ~~g~~~~A~~~~~~m~~~~~~ 965 (1038)
+..++++|+.=|.++.+..|.
T Consensus 180 k~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcc
Confidence 555566666666666555443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=84.13 E-value=41 Score=32.27 Aligned_cols=48 Identities=15% Similarity=0.453 Sum_probs=27.7
Q ss_pred HHHHHHHhCCCcCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh
Q 001645 286 EFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDA 337 (1038)
Q Consensus 286 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 337 (1038)
++.+.+.+.++.|+...|..++..+.+.|.+.... .++..++.+|...
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~ 62 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKP 62 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHH
Confidence 45555556666777777777777777776654433 3333444444443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=83.55 E-value=2.3 Score=28.61 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=10.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 001645 901 YTSFVVHFFREKQVGRALEIFER 923 (1038)
Q Consensus 901 y~~li~~~~~~g~~~~A~~~~~~ 923 (1038)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=82.94 E-value=43 Score=31.68 Aligned_cols=52 Identities=15% Similarity=0.010 Sum_probs=27.5
Q ss_pred HcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 001645 382 IAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKES 433 (1038)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 433 (1038)
+.++.++++.+++.+..-.+.....-..-...+...|++.+|+.+|+++...
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4456666666666665554443333333334445556666666666665443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=82.25 E-value=85 Score=34.58 Aligned_cols=65 Identities=9% Similarity=0.116 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc---cHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001645 862 DEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYP---TVHVYTSFVVHFFREKQVGRALEIFERMRQ 926 (1038)
Q Consensus 862 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 926 (1038)
...+|..+...+.+.|.++.|...+..+.+.+... +..+.-.-+..+...|+..+|+..+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33456666666667777777776666666532111 223333344555666666677666666655
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=82.07 E-value=14 Score=36.04 Aligned_cols=61 Identities=16% Similarity=0.206 Sum_probs=30.7
Q ss_pred chHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001645 829 LSYSLYIRALCRAGELEEALALLDEVKEERSKLDE--FVFGSLIHGLVQRGQIEEALAKVETM 889 (1038)
Q Consensus 829 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~A~~~~~~m 889 (1038)
..+..+...|++.|+.++|++.|.++.+....+.. ..+-.+|......+++..+.....+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34556666666666666666666665554322222 12334444444455555544444443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.76 E-value=8.5 Score=43.61 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=20.7
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001645 840 RAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETM 889 (1038)
Q Consensus 840 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 889 (1038)
+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|...
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 3444555544443321 3344555555555555555555544443
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.67 E-value=7 Score=38.43 Aligned_cols=92 Identities=14% Similarity=0.156 Sum_probs=62.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHH
Q 001645 900 VYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPF--PDFRTYSMFIGC 977 (1038)
Q Consensus 900 ~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~l~~~ 977 (1038)
|.+.-+..+.+.+.+.+|+...+.-.+.+ +.|..+-..+++.||-.|++++|..-++-.-+..+. +-...|.+++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556777888899999998888777652 346667777889999999999999888877765443 234455555543
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC
Q 001645 978 LCKVGKSEEALELLSEMTESGIVPS 1002 (1038)
Q Consensus 978 ~~~~g~~~~A~~l~~~m~~~g~~p~ 1002 (1038)
....++..+.+..|.
T Consensus 82 ----------ea~R~evfag~~~Pg 96 (273)
T COG4455 82 ----------EAARNEVFAGGAVPG 96 (273)
T ss_pred ----------HHHHHHHhccCCCCC
Confidence 233444455555553
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.85 E-value=13 Score=38.66 Aligned_cols=99 Identities=13% Similarity=0.186 Sum_probs=54.0
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 001645 403 DGKIYGIIIGGYLRKNDLSKALVQFERMKESG---YLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTA 479 (1038)
Q Consensus 403 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~p~~~~~~~ 479 (1038)
+..+...++..-....+++.+...+-++...- ..|+... ..+++.|. .-+.+++..++..=++.|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHH
Confidence 33344444444445555555555555554321 1121111 11222222 2345566666666677777777777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 001645 480 MVAGHVRQDNLSEAWKVFKCMEDK 503 (1038)
Q Consensus 480 li~~~~~~g~~~~A~~~~~~m~~~ 503 (1038)
+|+.+.+.+++.+|..+...|...
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHH
Confidence 777777777777777766666544
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=80.14 E-value=4.1 Score=26.78 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001645 970 TYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 970 ~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
+|..++.+|...|++++|+..+++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555555555555555555543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 84.1 bits (206), Expect = 1e-16
Identities = 30/174 (17%), Positives = 61/174 (35%), Gaps = 4/174 (2%)
Query: 847 ALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVV 906
A L D ++ E L+ + ++ A QA + +F
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 907 HFFREKQVGRALEIFERMRQ---EGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKG 963
Q+ A + + T+ Y A++ G+A G E V + +K G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 964 PFPDFRTYSMFIGCLCKVGKSEEALE-LLSEMTESGIVPSNINFRTIFFGLNRE 1016
PD +Y+ + C+ + + +E L +M++ G+ + + +R
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 62.9 bits (151), Expect = 5e-10
Identities = 17/147 (11%), Positives = 45/147 (30%), Gaps = 3/147 (2%)
Query: 882 ALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQ 941
A + +QA P + + + + Q A +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 942 GFANLGKVAEAWDV---FYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESG 998
++ A + + + K Y+ + + G +E + +L + ++G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 999 IVPSNINFRTIFFGLNREDNLYQITKR 1025
+ P +++ + R+D +R
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIER 222
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 62.5 bits (150), Expect = 6e-10
Identities = 24/195 (12%), Positives = 60/195 (30%), Gaps = 39/195 (20%)
Query: 834 YIRALCRAGELEEALALLDEVKEERSK---LDEFVFGSLIHGLVQRGQIEEALAKVETMK 890
+ + +L A LL +R K L ++ +++ G ++G +E + + +K
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 891 QAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVA 950
AG+ P +++Y A +Q + A
Sbjct: 193 DAGL-----------------------------------TPDLLSYAAALQCMGRQDQDA 217
Query: 951 EA-WDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSNINFRTI 1009
+M +G ++ + + + ++ + +P +N +
Sbjct: 218 GTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKL 277
Query: 1010 FFGLNREDNLYQITK 1024
+ +D K
Sbjct: 278 LRDVYAKDGRVSYPK 292
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 62.1 bits (149), Expect = 7e-10
Identities = 32/227 (14%), Positives = 69/227 (30%), Gaps = 5/227 (2%)
Query: 396 MMRRNLVDGKIYGIIIGGYLRKNDLSKA---LVQFERMKESGYLPMASTYTELMQHLFKL 452
+ + L + L A LV ++ L Y +M +
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 453 NEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEA-WKVFKCMEDKGIRPTRKS 511
+K+ + + G+ PD ++ A + RQD + + + M +G++
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF 238
Query: 512 YSVFIKELCRVSRTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQG 571
+V + E R + + KV + ++ + K S K+
Sbjct: 239 TAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLK 298
Query: 572 ICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKP 618
+ ++ ASR +VE + ++ L
Sbjct: 299 TLQCLFEKQLHM-ELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQ 344
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 62.1 bits (149), Expect = 7e-10
Identities = 25/178 (14%), Positives = 58/178 (32%), Gaps = 4/178 (2%)
Query: 410 IIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCEL---YNEML 466
++ K L + ++ + ++ L ++
Sbjct: 98 LLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR 157
Query: 467 KRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTN 526
++ A++ G RQ E V ++D G+ P SY+ ++ + R +
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217
Query: 527 E-ILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQEGEAS 583
I + L M + + ++S ++ +++V KVK + P S
Sbjct: 218 GTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTS 275
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 61.4 bits (147), Expect = 1e-09
Identities = 38/370 (10%), Positives = 95/370 (25%), Gaps = 18/370 (4%)
Query: 184 WVKLREGFCHATETYNTMLTIAGEAKELELLEEL---EREMEINSCAKNIKTWTILVSLY 240
+ + +L L L + + ++ +
Sbjct: 116 GQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGW 175
Query: 241 GKAKLIGKALLVFEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFY-KEMAQKEMVLD 299
+ + + V ++ G PD ++Y ++ + + +E ++M+Q+ + L
Sbjct: 176 ARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQ 235
Query: 300 LSLYKIVMNCAAKLGDVDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIR 359
++++ + + AV + Q+P +L+ + R
Sbjct: 236 ALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA--------KDGR 287
Query: 360 NLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKND 419
K + K L + ++ + +V + + LR
Sbjct: 288 VSYPKLHLPLKTLQCLFEKQLHM--ELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQW 345
Query: 420 LSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTA 479
K + L L L+E + L + Q +S A
Sbjct: 346 EKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQALPAQGESFTTLA 405
Query: 480 MVAGHVRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASK 539
+ ++ + Y ++ L + E +A
Sbjct: 406 RELSARTFSRHVVQRQ----RVSGQVQALQNHYRKYLCLLASDAEVPEPCLPRQYWEALG 461
Query: 540 IVIGDEIFHW 549
W
Sbjct: 462 APEALREQPW 471
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.8 bits (143), Expect = 4e-09
Identities = 29/207 (14%), Positives = 58/207 (28%), Gaps = 4/207 (1%)
Query: 629 RMLSSSTDWYHIQESLEKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSA 688
R+LS + + + +L + S QA S
Sbjct: 69 RLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQ 128
Query: 689 TYNMAIKTAGRGKDFK---HMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVF 745
K H+ + + R+ L+T D + +M+ + R G + + V
Sbjct: 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVL 188
Query: 746 EDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLC 805
+K G P +Y + + GR+ + + ++M G L
Sbjct: 189 FMVKDAGLTPDLLSYAAALQCM-GRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247
Query: 806 EVGMLQLAKSCMDVLRKVGFTVPLSYS 832
+L+ P +
Sbjct: 248 RATVLKAVHKVKPTFSLPPQLPPPVNT 274
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.0 bits (102), Expect = 3e-04
Identities = 17/197 (8%), Positives = 55/197 (27%), Gaps = 3/197 (1%)
Query: 739 EMAMRVFEDMKANGCNPSGSTYK-YLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELV 797
++ + + L + H + + + ++
Sbjct: 109 DVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMY 168
Query: 798 ETYLDCLCEVGMLQLAKSCMDVLRKVGFTV-PLSYSLYIRALCRAGELEEALA-LLDEVK 855
+ G + + +++ G T LSY+ ++ + R + + L+++
Sbjct: 169 NAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMS 228
Query: 856 EERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVG 915
+E KL L+ + ++ T P + + + +
Sbjct: 229 QEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRV 288
Query: 916 RALEIFERMRQEGCEPT 932
++ ++ C
Sbjct: 289 SYPKLHLPLKTLQCLFE 305
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 81.4 bits (200), Expect = 1e-15
Identities = 104/683 (15%), Positives = 207/683 (30%), Gaps = 208/683 (30%)
Query: 335 RDAYGCVLKSFCVSMRIREALEFIRN-LKSKEISMDRDHFETLVKGLCIAGRISDALEIV 393
+D +F + ++ + ++ L +EI DH + +S L +
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI----DHI------IMSKDAVSGTLRLF 68
Query: 394 DIMMRRNLVDGKIYGIIIGGYLRKN-DLSKALVQFERMKESGYLPMASTYTELMQHLFKL 452
++ + ++ + LR N + ++ E+ + S M Y E L+
Sbjct: 69 WTLLSKQ---EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM---MTRMYIEQRDRLYND 122
Query: 453 NE-YKKG----CELYNEMLKRGIQPDSVAVTAMVAGHVRQDNLSEAWKVFKCMEDKGIRP 507
N+ + K + Y + L++ + A ++ G + G
Sbjct: 123 NQVFAKYNVSRLQPYLK-LRQALLELRPAKNVLIDG----------------VLGSG--- 162
Query: 508 TRKSYSVFIKELCRVSRTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVEKV- 566
K + ++C KV M +IF W+ S E V
Sbjct: 163 --K--TWVALDVCLSY------KVQCKM-------DFKIF-WL-----NLKNCNSPETVL 199
Query: 567 KRMQGICKHHPQEGEASGNDASRG-QGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLH 625
+ +Q + N SR N++L + ++ + + L++ P C L
Sbjct: 200 EMLQKLLYQ------IDPNWTSRSDHSSNIKLRIHSIQAE--LRRLLKSKPYENCLLVLL 251
Query: 626 EI------------CRML-----SSSTD------WYHIQESLEKCAVQYTPELVLEILHN 662
+ C++L TD HI SL+ ++ TP+ V +
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI--SLDHHSMTLTPDEVKSL--- 306
Query: 663 SEMHGSAALHFFSWVG-KQADYSHSSATYN-MAIKTAGRGKDFKHMRNLFYEMRRNGYLI 720
++ + D T N + ++ E R+G L
Sbjct: 307 ----------LLKYLDCRPQDLPREVLTTNPRRL-------------SIIAESIRDG-LA 342
Query: 721 TPDTWTIMMMQYGRAGLT---EMAMRVFE--DMKANGCNPSGSTYKYLIISLSGRKGRKV 775
T D W LT E ++ V E + + + L
Sbjct: 343 TWDNW----KHVNCDKLTTIIESSLNVLEPAEYRKM--------FDRLS----------- 379
Query: 776 DHAIKIFQEMVNAGHIPDKELV-----ETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLS 830
+F + IP L D V + +L K + + T+ +
Sbjct: 380 -----VFPPSAH---IPTILLSLIWFDVIKSD--VMVVVNKLHKYSLVEKQPKESTISI- 428
Query: 831 YSLYIRALCRAGELEEAL--ALLDEVKEERS---------KLDEFVFGSLIHGLVQRGQI 879
S+Y+ + E E AL +++D ++ LD++ + + H L
Sbjct: 429 PSIYLELKVKL-ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 880 EEAL-------------AKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQ 926
E K+ A + T + F++ + +ER+
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK-PYICDNDPKYERLVN 546
Query: 927 E------GCEPTVVT--YTALIQ 941
E ++ YT L++
Sbjct: 547 AILDFLPKIEENLICSKYTDLLR 569
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 77.2 bits (189), Expect = 2e-14
Identities = 85/634 (13%), Positives = 198/634 (31%), Gaps = 165/634 (26%)
Query: 262 EPDAV-AYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMN-----CAAKLGD 315
DAV L +L + + ++ +F +E+ + YK +M+
Sbjct: 57 SKDAVSGTLRLFWTLLSKQE-EMVQKFVEEVLRIN-------YKFLMSPIKTEQRQPSMM 108
Query: 316 VDAVLSIADDMVRISQIPERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFET 375
+ D + +Q V + VS R++ L+ + L R
Sbjct: 109 TRMYIEQRDRLYNDNQ---------VFAKYNVS-RLQPYLKLRQALLE-----LRPAKNV 153
Query: 376 LVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKESGY 435
L+ G+ +G+ AL++ + +D KI+ + + + + L + + +
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 436 LPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVRQDNL--SEA 493
+ + + + + + +LK + + V N+ ++A
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELR------RLLKSKPYENCLLVL---------LNVQNAKA 258
Query: 494 WKVFKCMEDKGIRPTRKSYSVFIKELCRV---SRTNEILKVLNNMQASKIVIGD------ 544
W F + C++ +R ++ L+ + I +
Sbjct: 259 WNAF----NLS---------------CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 545 -----EIFHWVISCMEKKGEMESVEKVKRMQGICKHHPQE----GEASGNDASRGQG-PN 594
+ + ++ + + E + +P+ E+ + + +
Sbjct: 300 PDEVKSLL---LKYLDCRPQDLPRE-------VLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 595 VELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQYTPE 654
V D +++++ L +P + + + + S HI P
Sbjct: 350 VNCDKLTTIIESSLNVL-----EPAEYRKMFDRLSVFPPSA---HI------------PT 389
Query: 655 LVLEIL-----HNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNL 709
++L ++ + M LH +S V KQ S S ++ ++ + ++ +
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS-IPSIYLELKVKLENEYALHRS 448
Query: 710 F---YEMRR---NGYLITP--DT---WTIM--MMQYGRAGLTEMAMRVFEDMKANGCNPS 756
Y + + + LI P D I + + VF D
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD--------- 499
Query: 757 GSTYKYLIISLSGRKGRKVDHAIKIFQEMVNA--------GHIPDKE-----LVETYLDC 803
+++L +K R A ++N +I D + LV LD
Sbjct: 500 ---FRFL-----EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 804 LCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRA 837
L ++ + D+LR + ++ A
Sbjct: 552 LPKIEENLICSKYTDLLR-IALMAEDEA-IFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 4e-10
Identities = 74/509 (14%), Positives = 150/509 (29%), Gaps = 143/509 (28%)
Query: 594 NVELDHNEMER--KTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESLEKCAVQY 651
+++ + E + K +S + + +D+ ++ + + S + HI K AV
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM--SKDAVSG 63
Query: 652 TPELVLEILHNSEMHGSAALHF--------FSWVGK--QADYSHSSATYNMAIKTAG--- 698
T L +L E F + ++ + + S M I+
Sbjct: 64 TLRLFWTLLSKQE---EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 699 ------------RGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGL--TEMAMRV 744
R + + +R E+R ++ G G T +A+ V
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI----------DGVLGSGKTWVALDV 170
Query: 745 FEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCL 804
K IF +N + E V L L
Sbjct: 171 CLSYKVQCKMDFK-----------------------IF--WLNLKNCNSPETVLEMLQKL 205
Query: 805 CEVGMLQLAKSCMDVLRKVGFTVPL---SYSLYIRALCRAGELEEALALLDEVKEERSKL 861
Q+ + + L S +R L ++ E L +L V+ ++
Sbjct: 206 L----YQIDPN-WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-W 259
Query: 862 DEFVFG------------------------SLIH---GLVQRGQIEEALAKVETMK---- 890
+ F SL H L +++ L K +
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDL 318
Query: 891 --QA-GIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLG 947
+ P S + R+ L ++ + C+ T +I+ N+
Sbjct: 319 PREVLTTNPRRL---SIIAESIRDG-----LATWDNWKHVNCD----KLTTIIESSLNVL 366
Query: 948 KVAEAWDVFYRMKIKGPFPDFRTYSMFI--GCLCKV---GKSEEALELLSEMTESGIVPS 1002
+ AE +F R+ + FP S I L + + + +++++ + +V
Sbjct: 367 EPAEYRKMFDRLSV---FPP----SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 1003 NINFRT-----IFFGLNRE-DNLYQITKR 1025
T I+ L + +N Y + +
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRS 448
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 6e-07
Identities = 50/368 (13%), Positives = 104/368 (28%), Gaps = 82/368 (22%)
Query: 701 KDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYGRAGLTEMAMRVFED-MKANGCNPSGST 759
++ H+ + L WT++ Q EM + E+ ++ N
Sbjct: 49 EEIDHIIMSKDAVSGTLRLF----WTLLSKQ------EEMVQKFVEEVLRIN-------- 90
Query: 760 YKYLIISLSGR-KGRKVDHAIKIFQ--------EMVNAGHIPDKELVETYLDCLCEV--- 807
YK+L+ + + + + I Q ++ ++ + L E+
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 808 ------GMLQLAKSCM--DVLRKVGFTVPLSYSLY---IRALCRAGELEEALALLDEVKE 856
G+L K+ + DV + + ++ ++ + E L L
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL----- 205
Query: 857 ERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTV-----HVYTSFVVHFFRE 911
++D H + +I A++ + ++ Y +V +
Sbjct: 206 -LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW----- 259
Query: 912 KQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTY 971
A + C ++T T Q L A
Sbjct: 260 ----NAFNL-------SC-KILLT-TRFKQVTDFLS--AATTTHISLDHHSMTLTPDEVK 304
Query: 972 SMFIGCL-CKVGK-SEEALELLSEMTESGIVPSNINFRTIFFGLNREDNLYQITKRPFAV 1029
S+ + L C+ E L + S I S + L DN +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTT-NPRRLSIIAESIRDG------LATWDNWKHVNCDKLTT 357
Query: 1030 ILSTILES 1037
I+ + L
Sbjct: 358 IIESSLNV 365
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 3e-06
Identities = 80/540 (14%), Positives = 159/540 (29%), Gaps = 150/540 (27%)
Query: 2 RNLARFQSVCSNSVHKRPQSHLYKLQ----ISRH--SSSSKSSKPPQFNKPEKLQTNTYA 55
N++R Q + + L +L+ + S K+ K+Q
Sbjct: 129 YNVSRLQPY------LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 56 SLF----------NEITEILGADNVTTDETPSGFSV---SKRAPLELIEVSDRFGCSTHA 102
+F + E+L + P+ S S L + +
Sbjct: 183 KIFWLNLKNCNSPETVLEML--QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL---RRL 237
Query: 103 VCENAEEENLSVLEDTRVGNLGGIDV----SPIVHEIT----EIVRAGNDVVSMEERLEN 154
+ E L VL + V N + I+ +T ++ + + L++
Sbjct: 238 LKSKPYENCLLVLLN--VQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDH 293
Query: 155 LSFRFEP----EVVDKVLK-RCFKVPH-------LALRFFNWVKLREGFCHATETYNTML 202
S P ++ K L R +P L +R+G + + +
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-AESIRDGLAT-WDNWKHVN 351
Query: 203 TIAGEAKELELLEELEREMEINSCAKNIKTWTILVSLYGKAKLIGKALLVFEKMRKYGFE 262
++L +E S ++ ++ L VF
Sbjct: 352 C-----------DKLTTIIE--SSLNVLEP-AEYRKMF-------DRLSVFPP------- 383
Query: 263 PDA-VAYKVLVRSLCNAGKGDIALEFYKEMAQKEMV------LDLSLYKIVMNCAAKLGD 315
A + +L + + ++ + +V +S+ I + KL +
Sbjct: 384 -SAHIPTILLSL-IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 316 VDAVLSIADDMVRISQ--------IPERDAYGCVLKSFCVSMRIREALEFI-RNLKSKEI 366
A+ D I + P D Y F I +LK+ E
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQY------FY---------SHIGHHLKNIEH 486
Query: 367 SMDRDHFETL--------VKGLCIAGRISDAL-EIVDIMMRRNLVDGKIYGIIIGGYLRK 417
F + K + +A I++ L K Y Y+
Sbjct: 487 PERMTLFRMVFLDFRFLEQK-IRHDSTAWNASGSILNT-----LQQLKFY----KPYICD 536
Query: 418 ND-----LSKALVQF-ERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQ 471
ND L A++ F +++E+ S YT+L++ + E + ++ E K+ +Q
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLIC---SKYTDLLRIAL-MAEDE---AIFEEAHKQ-VQ 588
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 2e-04
Identities = 15/137 (10%), Positives = 38/137 (27%), Gaps = 5/137 (3%)
Query: 834 YIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAG 893
+ G +A+ L+ S+ ++++G +R + + +V++ +
Sbjct: 108 FAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAER--WTDVIDQVKSAGKWP 165
Query: 894 -IYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFA--NLGKVA 950
+ + V A A A + G +
Sbjct: 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNES 225
Query: 951 EAWDVFYRMKIKGPFPD 967
A + ++ P P
Sbjct: 226 AAVALLEWLQTTHPEPK 242
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1038 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.77 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.74 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.5 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.49 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.46 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.42 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.4 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.4 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.37 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.3 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.27 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.95 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.91 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.79 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.72 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.71 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.68 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.61 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.61 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.6 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.59 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.56 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.54 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.42 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.32 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.3 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.25 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.21 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.21 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.2 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.19 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.12 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.06 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.02 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.97 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.96 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.94 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.93 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.87 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.7 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.67 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.66 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.59 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.42 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.15 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.08 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.78 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.52 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.27 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=5.7e-23 Score=155.12 Aligned_cols=184 Identities=13% Similarity=0.059 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999999529978999999999973998741289999999982997699999999998089999998999999999
Q 001645 795 ELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLV 874 (1038)
Q Consensus 795 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 874 (1038)
..+..+..++...|++++|...+.......+.....+..+...+...|++++|+..|++..+.. +.+...+..+...+.
T Consensus 204 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 282 (388)
T d1w3ba_ 204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_conf 9999971552200529999999998577755479999999999998789999999999999849-998999999999999
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 359999999999999885997627459999999995099989999999998849997-7777999999999439989999
Q 001645 875 QRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEP-TVVTYTALIQGFANLGKVAEAW 953 (1038)
Q Consensus 875 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~ 953 (1038)
..|++++|...++...... +.+...+..+...+...|++++|+..+++.++. .| +...+..+...|...|++++|+
T Consensus 283 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~ 359 (388)
T d1w3ba_ 283 EKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HCCCHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 7487999999998654048-730010157999999878999999999999986--8898999999999999859999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 999998984999999999999999994399
Q 001645 954 DVFYRMKIKGPFPDFRTYSMFIGCLCKVGK 983 (1038)
Q Consensus 954 ~~~~~~~~~~~~~d~~~~~~l~~~~~~~g~ 983 (1038)
..++++.+..|. ++.+|..++.+|.+.|+
T Consensus 360 ~~~~~al~l~P~-~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 360 MHYKEAIRISPT-FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTCTT-CHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHHHCCC
T ss_conf 999999970999-89999999999998589
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.3e-22 Score=152.99 Aligned_cols=238 Identities=14% Similarity=0.067 Sum_probs=179.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 95899999999997899999999999999999529978999999999973998741289999999982997699999999
Q 001645 774 KVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDE 853 (1038)
Q Consensus 774 ~~~~A~~~~~~m~~~~~~~d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 853 (1038)
....+...+....... ......+..+...+...|+++.|...+....+..+..+..|..+...+...|++++|+..+++
T Consensus 150 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 228 (388)
T d1w3ba_ 150 RLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 0135678888740258-610689986363010247199999999999984946499999971552200529999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH
Q ss_conf 99808999999899999999935999999999999988599762745999999999509998999999999884999777
Q 001645 854 VKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTV 933 (1038)
Q Consensus 854 m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 933 (1038)
..... +.+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.++...... +.+.
T Consensus 229 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 305 (388)
T d1w3ba_ 229 ALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHA 305 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-CCCC
T ss_conf 57775-5479999999999998789999999999999849-9989999999999997487999999998654048-7300
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHCHHHHHHH
Q ss_conf 779999999994399899999999989849999999999999999943996999999999998999889-2029999999
Q 001645 934 VTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPS-NINFRTIFFG 1012 (1038)
Q Consensus 934 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~l~~~ 1012 (1038)
..+..+...+...|++++|+..++++.+..|. +..+|..++.+|...|++++|...+++..+ +.|+ ...+..+...
T Consensus 306 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~ 382 (388)
T d1w3ba_ 306 DSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNT 382 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
T ss_conf 10157999999878999999999999986889-899999999999985999999999999997--099989999999999
Q ss_pred HHCCCC
Q ss_conf 701688
Q 001645 1013 LNREDN 1018 (1038)
Q Consensus 1013 ~~~~g~ 1018 (1038)
+.+.||
T Consensus 383 ~~~~~D 388 (388)
T d1w3ba_ 383 LKEMQD 388 (388)
T ss_dssp HHHTCC
T ss_pred HHHCCC
T ss_conf 998589
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.1e-14 Score=103.65 Aligned_cols=117 Identities=15% Similarity=0.045 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 97699999999998089-99999899999999935999999999999988599762745999999999509998999999
Q 001645 843 ELEEALALLDEVKEERS-KLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIF 921 (1038)
Q Consensus 843 ~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 921 (1038)
...+|...+.+..+... ..+...+..+...+...|++++|...+++..... +.+...|..+..+|...|++++|.+.+
T Consensus 151 ~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 229 (323)
T d1fcha_ 151 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAY 229 (323)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCHHHHHHCCCCCCCCHHHHHHH
T ss_conf 7999999999999971301222111036888888887755002111222222-222111013330122111101378887
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9998849997777799999999943998999999999898
Q 001645 922 ERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKI 961 (1038)
Q Consensus 922 ~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 961 (1038)
+++++.. +-+...+..++.+|.+.|++++|+..|+++.+
T Consensus 230 ~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 230 RRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 7899884-32499999999999987899999999999997
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=4.6e-14 Score=99.79 Aligned_cols=96 Identities=19% Similarity=0.107 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 74599999999950999899999999988499977777999999999439989999999998984999999999999999
Q 001645 898 VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGC 977 (1038)
Q Consensus 898 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~ 977 (1038)
...+..+...+...|++++|...+++..... +-+...|..++..|...|++++|++.++++.+..|. ++.+|..++.+
T Consensus 172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~ 249 (323)
T d1fcha_ 172 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGIS 249 (323)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC-CHHHHHHHHHH
T ss_conf 2111036888888887755002111222222-222111013330122111101378887789988432-49999999999
Q ss_pred HHHCCCHHHHHHHHHHHH
Q ss_conf 994399699999999999
Q 001645 978 LCKVGKSEEALELLSEMT 995 (1038)
Q Consensus 978 ~~~~g~~~~A~~l~~~m~ 995 (1038)
|.+.|++++|++.+++..
T Consensus 250 ~~~~g~~~~A~~~~~~al 267 (323)
T d1fcha_ 250 CINLGAHREAVEHFLEAL 267 (323)
T ss_dssp HHHHTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
T ss_conf 998789999999999999
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=4.1e-11 Score=81.49 Aligned_cols=198 Identities=7% Similarity=0.007 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 99999999999739958999999999876988885449999999982049995899999999997899999999999999
Q 001645 723 DTWTIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYKYLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLD 802 (1038)
Q Consensus 723 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~l~~ 802 (1038)
..++.+...+.+.+..++|+.+++++.+. .|+..+.......+....++++++|+..++..++..+ -...++..+..
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~ 120 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_conf 99999999999588669999999999987--9887699999999999837679999999999998877-42268988758
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC----
Q ss_conf 9995299789999999999739987412899999999829976999999999980899999989999999993599----
Q 001645 803 CLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQ---- 878 (1038)
Q Consensus 803 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---- 878 (1038)
++...|++++|...+..+.+..+.+...|..++..+...|++++|++.++++.+.. +.+...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCCCHH
T ss_conf 88850537889988755543210046889988778888886678999999999879-74499998899999874563102
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf --999999999998859976274599999999950999899999999988
Q 001645 879 --IEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQ 926 (1038)
Q Consensus 879 --~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 926 (1038)
.++|+..+....+.. +.+...|..+...+...| .+++.+.++...+
T Consensus 200 ~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG-LSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCC-HHHHHHHHHHHHH
T ss_conf 35477679999999849-885699999877988627-1889999999997
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2.2e-10 Score=76.97 Aligned_cols=133 Identities=6% Similarity=0.006 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 95899999999997899999999999999999529-97899999999997399874128999999998299769999999
Q 001645 774 KVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVG-MLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLD 852 (1038)
Q Consensus 774 ~~~~A~~~~~~m~~~~~~~d~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 852 (1038)
..++|+.++..+++.++ -+...+.....++...| ++++|...++.+.+..+....+|..+...+...|++++|+..++
T Consensus 58 ~~~~Al~~~~~ai~lnP-~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~ 136 (315)
T d2h6fa1 58 RSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIA 136 (315)
T ss_dssp CCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 66999999999998798-87699999999999837679999999999998877422689887588885053788998875
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 999808999999899999999935999999999999988599762745999999999
Q 001645 853 EVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFF 909 (1038)
Q Consensus 853 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 909 (1038)
++.+. .+.+...|..+...+...|++++|+..++.+.+.+ +.+...|+.+..++.
T Consensus 137 kal~~-dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~ 191 (315)
T d2h6fa1 137 DILNQ-DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVIS 191 (315)
T ss_dssp HHHHH-CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_conf 55432-10046889988778888886678999999999879-744999988999998
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.46 E-value=1.7e-12 Score=90.00 Aligned_cols=275 Identities=10% Similarity=-0.026 Sum_probs=147.0
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----------HCCCHHHHHHHHHHHHHCCCCCC-HHHHH
Q ss_conf 99999559993569999999998698879999999999999----------73995899999999987698888-54499
Q 001645 693 AIKTAGRGKDFKHMRNLFYEMRRNGYLITPDTWTIMMMQYG----------RAGLTEMAMRVFEDMKANGCNPS-GSTYK 761 (1038)
Q Consensus 693 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----------~~g~~~~A~~~~~~m~~~g~~p~-~~~~~ 761 (1038)
++......+..++|..+++......+. +...|+..-..+. ..+.+++|+..++..... .|+ ...+.
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~--~pk~~~~~~ 111 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWH 111 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHH
T ss_conf 999986565669999999999998878-58999999999999765003477877899999999999986--888679898
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 99999982049995899999999997899999999999999999529978999999999973998741289999999982
Q 001645 762 YLIISLSGRKGRKVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRA 841 (1038)
Q Consensus 762 ~ll~~~~~~~~~~~~~A~~~~~~m~~~~~~~d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 841 (1038)
.....+.....++++++...+..+.+.........+.....++...+..++|...++.+.+.++.+..+|+.+...+...
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~ 191 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 86489988430428999999999985592121111057899987445528999999998871898799999999999982
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99769999999999808999999899999999935999999999999988599762745999999999509998999999
Q 001645 842 GELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIF 921 (1038)
Q Consensus 842 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 921 (1038)
|++++|...++..... .|. .......+...+..+++...+....... +++...+..+...+...++..+|...+
T Consensus 192 ~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 265 (334)
T d1dcea1 192 HPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKEL 265 (334)
T ss_dssp SCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH--HHH---HHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6889899988776776--899---9999999988244148899999887718-660567887999999986699999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 9998849997-777799999999943998999999999898499999999999999999
Q 001645 922 ERMRQEGCEP-TVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLC 979 (1038)
Q Consensus 922 ~~m~~~g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~~~ 979 (1038)
.+.... .| +...+..++..+...|+.++|++.++++.+..|. +...|..+...+.
T Consensus 266 ~~~~~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~-~~~y~~~L~~~~~ 321 (334)
T d1dcea1 266 QELEPE--NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLRSKFL 321 (334)
T ss_dssp HHHCTT--CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHH
T ss_pred HHHHHH--CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
T ss_conf 988762--9137999999999998789999999999999987966-3999999999986
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.42 E-value=9.1e-10 Score=73.12 Aligned_cols=186 Identities=17% Similarity=0.204 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 9589999999999789999999999999999952997899999999997399874-128999999998299769999999
Q 001645 774 KVDHAIKIFQEMVNAGHIPDKELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVP-LSYSLYIRALCRAGELEEALALLD 852 (1038)
Q Consensus 774 ~~~~A~~~~~~m~~~~~~~d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~ 852 (1038)
..+++..++++.+......+...+..++..+.+.|+.+.|..+++.+.+..+.+. ..|..++....+.|+.++|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 45999999999998749987999999999998613389999999999987157869999999999998278688999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9998089999998999999999359999999999999885997627459999999-995099989999999998849997
Q 001645 853 EVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVH-FFREKQVGRALEIFERMRQEGCEP 931 (1038)
Q Consensus 853 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p 931 (1038)
++.+.+ +.+...|...... +...|+.+.|..+|+.++.. .+.
T Consensus 159 ~al~~~------------------------------------~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~ 201 (308)
T d2onda1 159 KAREDA------------------------------------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGD 201 (308)
T ss_dssp HHHTST------------------------------------TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTT
T ss_pred HHHHHC------------------------------------CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHH
T ss_conf 999808------------------------------------8867999999999987655778999999999986-100
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 7777999999999439989999999998984999---9999999999999943996999999999998
Q 001645 932 TVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPF---PDFRTYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 932 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~d~~~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
+...|...+..+...|+.+.|..+|++.....+. .....|..++..-...|+.+.+..+.+++.+
T Consensus 202 ~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 202 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 38899999999998698689999999999827898689999999999999984999999999999998
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=8.4e-10 Score=73.34 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=7.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHH
Q ss_conf 999999943998999999999
Q 001645 938 ALIQGFANLGKVAEAWDVFYR 958 (1038)
Q Consensus 938 ~l~~~~~~~g~~~~A~~~~~~ 958 (1038)
.+...|.+.|++++|.+.+++
T Consensus 296 ~la~~~~~~g~~~~A~~~l~~ 316 (366)
T d1hz4a_ 296 LLNQLYWQAGRKSDAQRVLLD 316 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999987899999999999
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=1.3e-10 Score=78.44 Aligned_cols=201 Identities=10% Similarity=-0.025 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999999529978999999999973998741289999999982997699999999998089999998999999999
Q 001645 795 ELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLV 874 (1038)
Q Consensus 795 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 874 (1038)
.++..+..+|.+.|++++|...|+...+..|..+.+|..++.++...|++++|+..|+++.+.. +.+..++..+..++.
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 9999999999987999999999998543499988999600427888777887523446899987-611115888999999
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC----CHH
Q ss_conf 3599999999999998859976274599999999950999899999999988499977777999999999439----989
Q 001645 875 QRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLG----KVA 950 (1038)
Q Consensus 875 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g----~~~ 950 (1038)
..|++++|...|+...+.. +.+......+...+...+..+.+..+....... .++...+.. +..+.... ..+
T Consensus 117 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGWNI-VEFYLGNISEQTLME 192 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHHHH-HHHHTTSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 8766799999999998653-000788899999998853587899999876403--144434557-788888877777899
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH
Q ss_conf 99999999898499999999999999999439969999999999989998892
Q 001645 951 EAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPSN 1003 (1038)
Q Consensus 951 ~A~~~~~~~~~~~~~~d~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 1003 (1038)
.+...+.......+. ...+|..++.+|...|++++|...++.... ..|+.
T Consensus 193 ~~~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~ 242 (259)
T d1xnfa_ 193 RLKADATDNTSLAEH-LSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN 242 (259)
T ss_dssp HHHHHCCSHHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT
T ss_pred HHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--CCCCC
T ss_conf 999999986640845-099999999999987899999999999998--39977
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.37 E-value=1.3e-09 Score=72.21 Aligned_cols=13 Identities=0% Similarity=-0.054 Sum_probs=4.0
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 9978999999999
Q 001645 808 GMLQLAKSCMDVL 820 (1038)
Q Consensus 808 g~~~~A~~~~~~~ 820 (1038)
|+.+.|.++|..+
T Consensus 148 ~~~~~ar~i~~~a 160 (308)
T d2onda1 148 EGIKSGRMIFKKA 160 (308)
T ss_dssp HCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
T ss_conf 7868899999999
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=1.1e-09 Score=72.70 Aligned_cols=166 Identities=13% Similarity=-0.002 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 99999999999952997899999999997399874128999999998299769999999999808999999899999999
Q 001645 794 KELVETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGL 873 (1038)
Q Consensus 794 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 873 (1038)
..++..+..++.+.|++++|...|+.+.+..|..+.++..++.++...|++++|...|+...+.. +.+......+..++
T Consensus 71 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~ 149 (259)
T d1xnfa_ 71 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAE 149 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_conf 89996004278887778875234468999876111158889999998766799999999998653-00078889999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCC
Q ss_conf 9359999999999999885997627459999999995099----989999999998849997-77779999999994399
Q 001645 874 VQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQ----VGRALEIFERMRQEGCEP-TVVTYTALIQGFANLGK 948 (1038)
Q Consensus 874 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p-d~~~~~~l~~~~~~~g~ 948 (1038)
.+.+..+.+..+........ +....++ ++..+..... .+.+...+...... .| ...+|..+...|...|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~ 224 (259)
T d1xnfa_ 150 QKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGD 224 (259)
T ss_dssp HHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHCCC--HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHCCC
T ss_conf 88535878999998764031--4443455-7788888877777899999999986640--84509999999999998789
Q ss_pred HHHHHHHHHHHHHCCCC
Q ss_conf 89999999998984999
Q 001645 949 VAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 949 ~~~A~~~~~~~~~~~~~ 965 (1038)
+++|.+.+++.....|.
T Consensus 225 ~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 225 LDSATALFKLAVANNVH 241 (259)
T ss_dssp HHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHCCCC
T ss_conf 99999999999983997
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.27 E-value=5.5e-11 Score=80.69 Aligned_cols=286 Identities=10% Similarity=0.019 Sum_probs=185.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHH-H---HHHHHHH-----HCCCCHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 999999997399589999999998769888854499-9---9999982-----049995899999999997899999999
Q 001645 726 TIMMMQYGRAGLTEMAMRVFEDMKANGCNPSGSTYK-Y---LIISLSG-----RKGRKVDHAIKIFQEMVNAGHIPDKEL 796 (1038)
Q Consensus 726 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~---ll~~~~~-----~~~~~~~~A~~~~~~m~~~~~~~d~~~ 796 (1038)
..+..........++|+.++....+. .|+..+.. . ++..+.. ...+.+++|+.+++..++..+ .+...
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p-k~~~~ 109 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGT 109 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC-CCHHH
T ss_conf 99999986565669999999999998--8785899999999999976500347787789999999999998688-86798
Q ss_pred HHHHHHHHHHCCC--HHHHHHHHHHHHHCCCCCCCHHH-HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 9999999995299--78999999999973998741289-99999998299769999999999808999999899999999
Q 001645 797 VETYLDCLCEVGM--LQLAKSCMDVLRKVGFTVPLSYS-LYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGL 873 (1038)
Q Consensus 797 ~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 873 (1038)
+..+..++...+. ++++...+..+.+..+.....+. .....+...+..++|+..++.+.+.. +-+...|..+..++
T Consensus 110 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~ 188 (334)
T d1dcea1 110 WHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLL 188 (334)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-CCCHHHHHHHHHHH
T ss_conf 98864899884304289999999999855921211110578999874455289999999988718-98799999999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 93599999999999998859976274599999999950999899999999988499977777999999999439989999
Q 001645 874 VQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAW 953 (1038)
Q Consensus 874 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~ 953 (1038)
...|++++|...++...+. .|. ...+...+...+..+++...+....... +++...+..++..+...|+..+|.
T Consensus 189 ~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~ 262 (334)
T d1dcea1 189 PQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESC 262 (334)
T ss_dssp HHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHH--HHH---HHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9826889899988776776--899---9999999988244148899999887718-660567887999999986699999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHCHHHHHHHHHCCCCHHHHHC
Q ss_conf 9999989849999999999999999943996999999999998999889-2029999999701688556521
Q 001645 954 DVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTESGIVPS-NINFRTIFFGLNREDNLYQITK 1024 (1038)
Q Consensus 954 ~~~~~~~~~~~~~d~~~~~~l~~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~~~~ 1024 (1038)
..+.+.....|. +..+|..++.+|...|++++|.+.++...+ +.|+ ..-|..+...+..+..+..+++
T Consensus 263 ~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y~~~L~~~~~~e~~~~~~~~ 331 (334)
T d1dcea1 263 KELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLRSKFLLENSVLKMEY 331 (334)
T ss_dssp HHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999988762913-799999999999878999999999999998--796639999999999867659998764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.95 E-value=1.7e-07 Score=59.09 Aligned_cols=165 Identities=10% Similarity=-0.007 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH----CCCCC-CH
Q ss_conf 2899999999829976999999999980899-----999989999999993-5999999999999988----59976-27
Q 001645 830 SYSLYIRALCRAGELEEALALLDEVKEERSK-----LDEFVFGSLIHGLVQ-RGQIEEALAKVETMKQ----AGIYP-TV 898 (1038)
Q Consensus 830 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~~~~~ll~~~~~-~g~~~~A~~~~~~m~~----~g~~p-~~ 898 (1038)
+|..+..+|.+.|++++|++.+++..+.... .....+..+...|.. .|++++|...+++..+ .+.++ ..
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~ 158 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 99999999998088588899999766776532532058999999888676478789999889999999987337603334
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-----C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CC---H
Q ss_conf 459999999995099989999999998849997-----7-777999999999439989999999998984999-99---9
Q 001645 899 HVYTSFVVHFFREKQVGRALEIFERMRQEGCEP-----T-VVTYTALIQGFANLGKVAEAWDVFYRMKIKGPF-PD---F 968 (1038)
Q Consensus 899 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----d-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~d---~ 968 (1038)
.++..+...+...|++++|.+.|+++....... . ...+...+..+...|++..|...+++..+..+. ++ .
T Consensus 159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~ 238 (290)
T d1qqea_ 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 68899999999817399999999999986813324555699999999999998465999999999999759774443999
Q ss_pred HHHHHHHHHHHH--CCCHHHHHHHHHHH
Q ss_conf 999999999994--39969999999999
Q 001645 969 RTYSMFIGCLCK--VGKSEEALELLSEM 994 (1038)
Q Consensus 969 ~~~~~l~~~~~~--~g~~~~A~~l~~~m 994 (1038)
.....++.++.. .+.+++|+..++.+
T Consensus 239 ~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 9999999999836899999999999887
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=2.4e-07 Score=58.10 Aligned_cols=86 Identities=8% Similarity=-0.020 Sum_probs=36.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 99999829976999999999980899999989999999993599999999999998859976274599999999950999
Q 001645 835 IRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQV 914 (1038)
Q Consensus 835 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 914 (1038)
...+...|++++|++.|.++ .+++...|..+..+|...|++++|...|++..+.+ +.....|..+..+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHC----CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCH
T ss_conf 99999877999999999864----89889999999999998589146787899999985-52346678899999854249
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999998
Q 001645 915 GRALEIFERMR 925 (1038)
Q Consensus 915 ~~A~~~~~~m~ 925 (1038)
++|+..|++.+
T Consensus 87 ~~A~~~~~kAl 97 (192)
T d1hh8a_ 87 DLAIKDLKEAL 97 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=8.1e-07 Score=54.80 Aligned_cols=119 Identities=14% Similarity=0.018 Sum_probs=53.2
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 99359999999999999885997627459999999995099989999999998849997777799999999943998999
Q 001645 873 LVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEA 952 (1038)
Q Consensus 873 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A 952 (1038)
+...|+++.|++.|.++. +|+..+|..+..+|...|++++|++.|++.++.. +-+...|..+..+|.+.|++++|
T Consensus 15 ~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHCC----CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 998779999999998648----9889999999999998589146787899999985-52346678899999854249999
Q ss_pred HHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999998984999--------------9-999999999999943996999999999998
Q 001645 953 WDVFYRMKIKGPF--------------P-DFRTYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 953 ~~~~~~~~~~~~~--------------~-d~~~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
+..|++.....+. . ...++..++.+|...|++++|.+.++....
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999867267367899866543630588999999999997899999999999983
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=1.3e-06 Score=53.59 Aligned_cols=105 Identities=15% Similarity=0.134 Sum_probs=58.0
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 99999359999999999999885997627459999999995099989999999998849997777799999999943998
Q 001645 870 IHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKV 949 (1038)
Q Consensus 870 l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~ 949 (1038)
...|.+.|++++|...|++..+.+ +.+...|..+..+|...|++++|...|+++++.. +-+...|..++.++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
T ss_conf 999999589999999866021100-0113332456788874054212888899999875-44668779999999994999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 9999999998984999999999999999
Q 001645 950 AEAWDVFYRMKIKGPFPDFRTYSMFIGC 977 (1038)
Q Consensus 950 ~~A~~~~~~~~~~~~~~d~~~~~~l~~~ 977 (1038)
++|...+++.....|. +...+..+..+
T Consensus 95 ~eA~~~~~~a~~~~p~-~~~~~~~l~~~ 121 (159)
T d1a17a_ 95 RAALRDYETVVKVKPH-DKDAKMKYQEC 121 (159)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCC-CHHHHHHHHHH
T ss_conf 9999989999872999-79999999999
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.71 E-value=4.7e-06 Score=50.06 Aligned_cols=62 Identities=10% Similarity=-0.025 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 899999999935999999999999988599762------74599999999950999899999999988
Q 001645 865 VFGSLIHGLVQRGQIEEALAKVETMKQAGIYPT------VHVYTSFVVHFFREKQVGRALEIFERMRQ 926 (1038)
Q Consensus 865 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 926 (1038)
++..+...+...|++++|...|+++........ ...+...+..+...|+.+.|...+++..+
T Consensus 160 ~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 88999999998173999999999999868133245556999999999999984659999999999997
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.68 E-value=5.1e-07 Score=56.04 Aligned_cols=93 Identities=15% Similarity=0.005 Sum_probs=37.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999999952997899999999997399874128999999998299769999999999808999999899999999935
Q 001645 797 VETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQR 876 (1038)
Q Consensus 797 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 876 (1038)
+......+.+.|++++|...|..+.+..|.++..|..++.+|.+.|++++|+..|++..+.. +-+..+|..+..+|...
T Consensus 7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~~~~~l 85 (201)
T d2c2la1 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEM 85 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHC
T ss_conf 99999999986999999999999998599989999817898741000001247888888718-87389999999999987
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 99999999999998
Q 001645 877 GQIEEALAKVETMK 890 (1038)
Q Consensus 877 g~~~~A~~~~~~m~ 890 (1038)
|++++|...|+...
T Consensus 86 ~~~~~A~~~~~~al 99 (201)
T d2c2la1 86 ESYDEAIANLQRAY 99 (201)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
T ss_conf 99999999999998
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=4.6e-08 Score=62.54 Aligned_cols=110 Identities=13% Similarity=-0.038 Sum_probs=62.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
Q ss_conf 99999999940999999999999984999889877999999999809999999999999884998825499999998605
Q 001645 338 YGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRK 417 (1038)
Q Consensus 338 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 417 (1038)
+..+...+.+.++.+.|...+....... ....+..+...+...+++++|...+.+....++.+...|+.+...+...
T Consensus 123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~ 199 (497)
T d1ya0a1 123 SSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSK 199 (497)
T ss_dssp --------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 9985799875899999999999882788---9999999999999802478999999999987899659999999999986
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 9987999999999888999999999999999995
Q 001645 418 NDLSKALVQFERMKESGYLPMASTYTELMQHLFK 451 (1038)
Q Consensus 418 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 451 (1038)
|+..+|+..|.+..... .|...++..+...+.+
T Consensus 200 ~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 200 GDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp TCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHH
T ss_conf 99999999999998179-9978999999999987
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=2.7e-06 Score=51.58 Aligned_cols=90 Identities=17% Similarity=0.081 Sum_probs=41.2
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 99999509998999999999884999777779999999994399899999999989849999999999999999943996
Q 001645 905 VVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKS 984 (1038)
Q Consensus 905 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~~~~~g~~ 984 (1038)
...+...|++++|+.+|++.++.. +-+...|..+..+|...|++++|+..++++.+.+|. ++..|..++.+|...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCH
T ss_conf 999999699999999999988619-960134300011011000011210013467774022-026778899999981279
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999998
Q 001645 985 EEALELLSEMTE 996 (1038)
Q Consensus 985 ~~A~~l~~~m~~ 996 (1038)
++|+..+++..+
T Consensus 88 ~~A~~~~~~a~~ 99 (117)
T d1elwa_ 88 EEAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999998
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.60 E-value=2.3e-07 Score=58.22 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=17.4
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999809999999999999884998825499999998605998799999999
Q 001645 377 VKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFER 429 (1038)
Q Consensus 377 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 429 (1038)
...|.+.|++++|...|.+....++.+...|..+..+|.+.|++++|+..|.+
T Consensus 11 Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~ 63 (201)
T d2c2la1 11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999869999999999999985999899998178987410000012478888
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=2.5e-08 Score=64.15 Aligned_cols=108 Identities=6% Similarity=-0.128 Sum_probs=43.0
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999998605998799999999988899999999999999999509964999999999989999898899999999881
Q 001645 407 YGIIIGGYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRGIQPDSVAVTAMVAGHVR 486 (1038)
Q Consensus 407 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~ 486 (1038)
+..+...+.+.++.+.|...+....... ....+..+...+...++++.|...|.+..+.. +.+...|+.+...+..
T Consensus 123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~ 198 (497)
T d1ya0a1 123 SSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASS 198 (497)
T ss_dssp --------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
T ss_conf 9985799875899999999999882788---99999999999998024789999999999878-9965999999999998
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 699999999999988589999988899999999
Q 001645 487 QDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKEL 519 (1038)
Q Consensus 487 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 519 (1038)
.|+..+|...|.+..... .|...++..|...+
T Consensus 199 ~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 199 KGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp TTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHH
T ss_conf 699999999999998179-99789999999999
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=6.3e-06 Score=49.28 Aligned_cols=88 Identities=15% Similarity=-0.033 Sum_probs=35.0
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 99952997899999999997399874128999999998299769999999999808999999899999999935999999
Q 001645 803 CLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEA 882 (1038)
Q Consensus 803 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 882 (1038)
.|.+.|++++|...|..+.+.+|.++..|..+...+...|++++|+..|+++.+.. +.+...|..++.++...|++++|
T Consensus 19 ~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~eA 97 (159)
T d1a17a_ 19 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 97 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 99995899999998660211000113332456788874054212888899999875-44668779999999994999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999988
Q 001645 883 LAKVETMKQ 891 (1038)
Q Consensus 883 ~~~~~~m~~ 891 (1038)
...+++...
T Consensus 98 ~~~~~~a~~ 106 (159)
T d1a17a_ 98 LRDYETVVK 106 (159)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 998999987
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=3.7e-06 Score=50.68 Aligned_cols=105 Identities=10% Similarity=-0.006 Sum_probs=58.9
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 99999359999999999999885997627459999999995099989999999998849997777799999999943998
Q 001645 870 IHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKV 949 (1038)
Q Consensus 870 l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~ 949 (1038)
+..+...|++++|+..|++..+.. +.+...|..+..+|...|++++|+..+++.++.. +.+...|..++.++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCH
T ss_conf 999999699999999999988619-9601343000110110000112100134677740-22026778899999981279
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 9999999998984999999999999999
Q 001645 950 AEAWDVFYRMKIKGPFPDFRTYSMFIGC 977 (1038)
Q Consensus 950 ~~A~~~~~~~~~~~~~~d~~~~~~l~~~ 977 (1038)
++|+..+++..+..|. ++..+..+..+
T Consensus 88 ~~A~~~~~~a~~~~p~-~~~~~~~l~~l 114 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEAN-NPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHTTCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_conf 9999999999984989-89999999978
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=2.7e-05 Score=45.33 Aligned_cols=83 Identities=7% Similarity=0.041 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 59999999995099989999999998849997777799999999943998999999999898499999999999999999
Q 001645 900 VYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLC 979 (1038)
Q Consensus 900 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~~~ 979 (1038)
+|+.+..+|.+.|++++|+..+++.++.. +.+...+..++.+|...|++++|+..|+++.+..|. +..+...+..+..
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQ 141 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
T ss_conf 99999999886421101100000001002-231034677799998722299999999999972989-8999999999999
Q ss_pred HCCCH
Q ss_conf 43996
Q 001645 980 KVGKS 984 (1038)
Q Consensus 980 ~~g~~ 984 (1038)
+.+..
T Consensus 142 ~~~~~ 146 (170)
T d1p5qa1 142 RIRRQ 146 (170)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.32 E-value=6.2e-06 Score=49.33 Aligned_cols=93 Identities=14% Similarity=0.037 Sum_probs=68.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999950999899999999988499977777999999999439989999999998984999999999999999994
Q 001645 901 YTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCK 980 (1038)
Q Consensus 901 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~~~~ 980 (1038)
+..+...+.+.|++++|+..+++.+... +-+...|..++.++.+.|++++|+..++++.+..|. +..+|..++.+|..
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCHHHHHHHHHH
T ss_conf 9999999998760589999886101121-111001233545641012587741000001111110-00003789999999
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 399699999999999
Q 001645 981 VGKSEEALELLSEMT 995 (1038)
Q Consensus 981 ~g~~~~A~~l~~~m~ 995 (1038)
.|++++|.+.+++.+
T Consensus 97 ~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 97 EHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 789999999999981
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=3.1e-05 Score=44.96 Aligned_cols=59 Identities=14% Similarity=0.010 Sum_probs=25.2
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999529978999999999973998741289999999982997699999999998
Q 001645 798 ETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKE 856 (1038)
Q Consensus 798 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 856 (1038)
..+..+|.+.|++++|...++.+....|.++.+|..++.+|...|++++|+..|++..+
T Consensus 66 ~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 66 LNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999988642110110000000100223103467779999872229999999999997
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=5.1e-06 Score=49.87 Aligned_cols=92 Identities=9% Similarity=0.040 Sum_probs=37.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q ss_conf 999999509998999999999884999777779999999994399---8999999999898499999-999999999999
Q 001645 904 FVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGK---VAEAWDVFYRMKIKGPFPD-FRTYSMFIGCLC 979 (1038)
Q Consensus 904 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~d-~~~~~~l~~~~~ 979 (1038)
++..+...+++++|.+.|++.+..+ +.+..++..+..++.+.++ .++|+.+++++....+.++ ..+|..++.+|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 9887369999999999999988329-998999999999999851267899999999999860699319999999999999
Q ss_pred HCCCHHHHHHHHHHHHH
Q ss_conf 43996999999999998
Q 001645 980 KVGKSEEALELLSEMTE 996 (1038)
Q Consensus 980 ~~g~~~~A~~l~~~m~~ 996 (1038)
+.|++++|.+.++++++
T Consensus 84 ~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 97316999999999997
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.21 E-value=5.9e-05 Score=43.25 Aligned_cols=79 Identities=9% Similarity=0.012 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 74599999999950999899999999988499977777999999999439989999999998984999999999999999
Q 001645 898 VHVYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGC 977 (1038)
Q Consensus 898 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~ 977 (1038)
...|..+..++.+.|++++|+..++++++.. +.+...|..++.++...|++++|+..|+++.+..|. +..++..+..+
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~ 154 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_conf 9999989999986402101366655443100-022367776999999804799999999999985989-99999999999
Q ss_pred H
Q ss_conf 9
Q 001645 978 L 978 (1038)
Q Consensus 978 ~ 978 (1038)
+
T Consensus 155 ~ 155 (169)
T d1ihga1 155 K 155 (169)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.21 E-value=8e-05 Score=42.43 Aligned_cols=72 Identities=13% Similarity=0.145 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 59999999995099989999999998849997777799999999943998999999999898499999999999
Q 001645 900 VYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSM 973 (1038)
Q Consensus 900 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~ 973 (1038)
+|..+..+|.+.|++++|++.++++++.. +.+...|..++.++...|++++|+..|++..+..|. +..+...
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~ 140 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNS 140 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHH
T ss_conf 99619999998465301110100010000-000124677689999968999999999999982989-8999999
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=1.7e-05 Score=46.61 Aligned_cols=101 Identities=14% Similarity=0.147 Sum_probs=46.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q ss_conf 999999359999999999999885997627459999999995099---9899999999988499977-777999999999
Q 001645 869 LIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQ---VGRALEIFERMRQEGCEPT-VVTYTALIQGFA 944 (1038)
Q Consensus 869 ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~pd-~~~~~~l~~~~~ 944 (1038)
+++.+...+++++|.+.|+.....+ +.+..++..+..++.+.++ .++|+.++++++.....|+ ...+..++.+|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 9887369999999999999988329-998999999999999851267899999999999860699319999999999999
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 439989999999998984999999999
Q 001645 945 NLGKVAEAWDVFYRMKIKGPFPDFRTY 971 (1038)
Q Consensus 945 ~~g~~~~A~~~~~~~~~~~~~~d~~~~ 971 (1038)
+.|++++|++.|+++.+..|. +..+.
T Consensus 84 ~~g~~~~A~~~~~~aL~~~P~-~~~A~ 109 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTEPQ-NNQAK 109 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCC-CHHHH
T ss_conf 973169999999999976909-89999
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.19 E-value=0.0001 Score=41.77 Aligned_cols=93 Identities=10% Similarity=0.089 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 59999999995099989999999998849997777799999999943998999999999898499999999999999999
Q 001645 900 VYTSFVVHFFREKQVGRALEIFERMRQEGCEPTVVTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLC 979 (1038)
Q Consensus 900 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~~~ 979 (1038)
.|..+..+|.+.|++++|+..++..++.. +.+...|..+..++...|++++|+..++++.+..|. +..+...+..+..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
T ss_conf 99849999877622011000223222013-104889998899998827899999999999985989-8999999999999
Q ss_pred HCCCH-HHHHHHHHHH
Q ss_conf 43996-9999999999
Q 001645 980 KVGKS-EEALELLSEM 994 (1038)
Q Consensus 980 ~~g~~-~~A~~l~~~m 994 (1038)
..+.. +...+++..|
T Consensus 144 ~~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 144 KAKEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9986999999999999
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.12 E-value=0.00015 Score=40.74 Aligned_cols=56 Identities=11% Similarity=0.175 Sum_probs=22.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 999999943998999999999898499999999999999999439969999999999
Q 001645 938 ALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEM 994 (1038)
Q Consensus 938 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~~~~~g~~~~A~~l~~~m 994 (1038)
.+...+...|++++|+..++++.+..|. +...|..++.+|...|++++|++.|+++
T Consensus 72 ~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 72 AKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 9999998879905789999999984985-1999999999999855799999999999
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.06 E-value=0.0002 Score=39.91 Aligned_cols=61 Identities=15% Similarity=-0.012 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 79999999994399899999999989849999999999999999943996999999999998
Q 001645 935 TYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSMFIGCLCKVGKSEEALELLSEMTE 996 (1038)
Q Consensus 935 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~l~~~~~~~g~~~~A~~l~~~m~~ 996 (1038)
++..+..+|.+.|++++|+..++++.+..|. +..+|..++.+|...|++++|+..++...+
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCCCCH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9961999999846530111010001000000-012467768999996899999999999998
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.02 E-value=5.2e-05 Score=43.60 Aligned_cols=87 Identities=15% Similarity=0.106 Sum_probs=30.5
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 99999829976999999999980899999989999999993599999999999998859976274599999999950999
Q 001645 835 IRALCRAGELEEALALLDEVKEERSKLDEFVFGSLIHGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVHFFREKQV 914 (1038)
Q Consensus 835 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 914 (1038)
+..+.+.|++++|+..|++..... +-+...|..+..++.+.|++++|+..|++..+.. +.+...|..+...|...|+.
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCHHHHHHHHHHCCCH
T ss_conf 999998760589999886101121-1110012335456410125877410000011111-10000037899999997899
Q ss_pred HHHHHHHHH
Q ss_conf 899999999
Q 001645 915 GRALEIFER 923 (1038)
Q Consensus 915 ~~A~~~~~~ 923 (1038)
++|++.+++
T Consensus 101 ~~A~~~l~~ 109 (112)
T d1hxia_ 101 NAALASLRA 109 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.97 E-value=0.00016 Score=40.62 Aligned_cols=60 Identities=17% Similarity=0.025 Sum_probs=26.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999999999529978999999999973998741289999999982997699999999998
Q 001645 797 VETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKE 856 (1038)
Q Consensus 797 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 856 (1038)
+..+..++.+.|++++|...+..+.+..|..+.+|..++.++...|++++|+..|+++.+
T Consensus 80 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 80 VLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 998999998640210136665544310002236777699999980479999999999998
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.96 E-value=0.00017 Score=40.39 Aligned_cols=60 Identities=17% Similarity=0.061 Sum_probs=26.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999999999529978999999999973998741289999999982997699999999998
Q 001645 797 VETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKE 856 (1038)
Q Consensus 797 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 856 (1038)
+..+..+|.+.|++++|...+..+.+..|.+..+|..+..++...|++++|...|+++.+
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 984999987762201100022322201310488999889999882789999999999998
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.94 E-value=1.8e-05 Score=46.50 Aligned_cols=50 Identities=18% Similarity=0.206 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 09999999999999884998825499999998605998799999999988
Q 001645 383 AGRISDALEIVDIMMRRNLVDGKIYGIIIGGYLRKNDLSKALVQFERMKE 432 (1038)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 432 (1038)
.|++++|...+++.++.++.+...+..+...++..|++++|...++...+
T Consensus 9 ~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 88999999999999997899999999999999987999999999999998
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.93 E-value=2.4e-05 Score=45.65 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 0999999999999984999889877999999999809999999999999884998
Q 001645 348 SMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLV 402 (1038)
Q Consensus 348 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 402 (1038)
.|++++|+..+++..+..+. +...+..+...|+..|++++|...++...+.++.
T Consensus 9 ~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~ 62 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62 (264)
T ss_dssp TTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred CCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 88999999999999997899-9999999999999879999999999999986997
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=0.00023 Score=39.55 Aligned_cols=109 Identities=9% Similarity=-0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH------HHHHHHH
Q ss_conf 9999999995299789999999999739987412899999999829976999999999980899999------9899999
Q 001645 797 VETYLDCLCEVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRAGELEEALALLDEVKEERSKLDE------FVFGSLI 870 (1038)
Q Consensus 797 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~ll 870 (1038)
+..+...+...|++++|...|....+.+|.++..+..+..+|...|++++|+..++++.+....... .+|..+.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999985999999999999988496458999868899988186077899999999868012788988999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 9999359999999999999885997627459999999
Q 001645 871 HGLVQRGQIEEALAKVETMKQAGIYPTVHVYTSFVVH 907 (1038)
Q Consensus 871 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 907 (1038)
..+...+++++|+..|+..... .++......+-.+
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l~~~ 121 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHC--CCCHHHHHHHHHH
T ss_conf 9999938899999999999845--9999999999999
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.70 E-value=0.00084 Score=36.07 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=3.5
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999998
Q 001645 949 VAEAWDVFYRM 959 (1038)
Q Consensus 949 ~~~A~~~~~~~ 959 (1038)
.++|+..|++.
T Consensus 198 ~~~A~~~~~~a 208 (265)
T d1ouva_ 198 FKEALARYSKA 208 (265)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 34445467665
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.67 E-value=0.00095 Score=35.76 Aligned_cols=48 Identities=15% Similarity=-0.035 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCC
Q ss_conf 998999999999884999777779999999994----399899999999989849
Q 001645 913 QVGRALEIFERMRQEGCEPTVVTYTALIQGFAN----LGKVAEAWDVFYRMKIKG 963 (1038)
Q Consensus 913 ~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 963 (1038)
+.++|...|++..+.| ++..+..|...|.+ ..+.++|.+.|++....|
T Consensus 197 d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 197 NFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 0344454676653036---899999999999839997618999999999999876
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.66 E-value=0.0005 Score=37.47 Aligned_cols=36 Identities=6% Similarity=-0.080 Sum_probs=16.8
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 529978999999999973998741289999999982
Q 001645 806 EVGMLQLAKSCMDVLRKVGFTVPLSYSLYIRALCRA 841 (1038)
Q Consensus 806 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 841 (1038)
+.+.+++|...++...+..|.++..+..+..++...
T Consensus 9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~ 44 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLEL 44 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 873699999999999861883108999999999876
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.59 E-value=0.00025 Score=39.39 Aligned_cols=17 Identities=18% Similarity=0.018 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHCCCC
Q ss_conf 89999999998984999
Q 001645 949 VAEAWDVFYRMKIKGPF 965 (1038)
Q Consensus 949 ~~~A~~~~~~~~~~~~~ 965 (1038)
+++|.+.|+++.+..|.
T Consensus 102 ~~~A~~~~~kal~l~P~ 118 (145)
T d1zu2a1 102 FDLATQFFQQAVDEQPD 118 (145)
T ss_dssp HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHCCCCCCCC
T ss_conf 78763121100025988
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.42 E-value=0.002 Score=33.70 Aligned_cols=17 Identities=29% Similarity=0.196 Sum_probs=6.3
Q ss_pred HHCCCHHHHHHHHHHHH
Q ss_conf 97399589999999998
Q 001645 733 GRAGLTEMAMRVFEDMK 749 (1038)
Q Consensus 733 ~~~g~~~~A~~~~~~m~ 749 (1038)
...|++++|...|....
T Consensus 22 ~~~g~~e~A~~~~~~AL 38 (179)
T d2ff4a2 22 AAAGRFEQASRHLSAAL 38 (179)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
T ss_conf 98879999999999998
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.15 E-value=0.004 Score=31.87 Aligned_cols=296 Identities=8% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99998689997899899999999907992479999999974798679987999999998119956999999999875988
Q 001645 253 FEKMRKYGFEPDAVAYKVLVRSLCNAGKGDIALEFYKEMAQKEMVLDLSLYKIVMNCAAKLGDVDAVLSIADDMVRISQI 332 (1038)
Q Consensus 253 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 332 (1038)
+..+.+.=-.|+..--..+...|-+.|.++.|..+|..+.. |.-++..+.+.+++..|.+++.+.
T Consensus 2 ~~~~e~fl~~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------ 66 (336)
T d1b89a_ 2 LAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------ 66 (336)
T ss_dssp HHHHTTTTTCC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------
T ss_pred CHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCC---------HHHHHHHHHHHCCHHHHHHHHHHC------
T ss_conf 45699987589857899999999878779999999986789---------999999997031599999999880------
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 89100999999999409999999999999849998898779999999998099999999999998849988254999999
Q 001645 333 PERDAYGCVLKSFCVSMRIREALEFIRNLKSKEISMDRDHFETLVKGLCIAGRISDALEIVDIMMRRNLVDGKIYGIIIG 412 (1038)
Q Consensus 333 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 412 (1038)
-+..+|..+...+........+ .+.......+......++..|-..|.+++...+++........+...++.++.
T Consensus 67 ~~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~ 141 (336)
T d1b89a_ 67 NSTRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI 141 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCHHHHH-----HHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 8899999999999727287899-----99998753578878999999987698599999999997577444679999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHH
Q ss_conf 986059987999999999888999999999999999995099649999999999899--------998988999999998
Q 001645 413 GYLRKNDLSKALVQFERMKESGYLPMASTYTELMQHLFKLNEYKKGCELYNEMLKRG--------IQPDSVAVTAMVAGH 484 (1038)
Q Consensus 413 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~m~~~~--------~~p~~~~~~~li~~~ 484 (1038)
.|++.+ .++..+.+... .+..-...++..|...+-+.++.-++..+-... ..++..-....+..+
T Consensus 142 lyak~~-~~kl~e~l~~~------s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~ 214 (336)
T d1b89a_ 142 LYSKFK-PQKMREHLELF------WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII 214 (336)
T ss_dssp HHHTTC-HHHHHHHHHHH------STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHH
T ss_pred HHHHHC-HHHHHHHHHHC------CCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 999869-49999999860------23599999999988748749999999855879999999997654456699999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 81699999999999988589999988899999999964997899999999886898779774999999999329868999
Q 001645 485 VRQDNLSEAWKVFKCMEDKGIRPTRKSYSVFIKELCRVSRTNEILKVLNNMQASKIVIGDEIFHWVISCMEKKGEMESVE 564 (1038)
Q Consensus 485 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~~ 564 (1038)
.+..+.+...++.....+. ++...+.++......-+..+..+.+++-
T Consensus 215 ~k~~N~e~~~~~i~~yL~~----~p~~i~~lL~~v~~~~d~~r~V~~~~k~----------------------------- 261 (336)
T d1b89a_ 215 TKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNYFSKV----------------------------- 261 (336)
T ss_dssp HHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHHHHHHHHHHT-----------------------------
T ss_pred HCCCCHHHHHHHHHHHHHC----CHHHHHHHHHHHCCCCCHHHHHHHHHHC-----------------------------
T ss_conf 7247869999999999975----9999999999856579989999999853-----------------------------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 99988402058998775445666678999854553422100000123589999879366999998812898620189987
Q 001645 565 KVKRMQGICKHHPQEGEASGNDASRGQGPNVELDHNEMERKTTVSHLVEPLPKPYCEQDLHEICRMLSSSTDWYHIQESL 644 (1038)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 644 (1038)
T Consensus 262 -------------------------------------------------------------------------------- 261 (336)
T d1b89a_ 262 -------------------------------------------------------------------------------- 261 (336)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 42038899999999997044452469899886111899878999999999999559993569999999998698879999
Q 001645 645 EKCAVQYTPELVLEILHNSEMHGSAALHFFSWVGKQADYSHSSATYNMAIKTAGRGKDFKHMRNLFYEMRRNGYLITPDT 724 (1038)
Q Consensus 645 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 724 (1038)
+++......++.....+ +..+
T Consensus 262 --------------------------------------------------------~~l~li~p~Le~v~~~n---~~~v 282 (336)
T d1b89a_ 262 --------------------------------------------------------KQLPLVKPYLRSVQNHN---NKSV 282 (336)
T ss_dssp --------------------------------------------------------TCTTTTHHHHHHHHTTC---CHHH
T ss_pred --------------------------------------------------------CCCHHHHHHHHHHHHCC---HHHH
T ss_conf --------------------------------------------------------88077999999999818---0999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999999973995899999999
Q 001645 725 WTIMMMQYGRAGLTEMAMRVFED 747 (1038)
Q Consensus 725 ~~~li~~~~~~g~~~~A~~~~~~ 747 (1038)
.+++...|...++++.-.+..+.
T Consensus 283 n~al~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 283 NESLNNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999998671246789999987
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.08 E-value=0.0047 Score=31.45 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=6.9
Q ss_pred HHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999943998999999999
Q 001645 939 LIQGFANLGKVAEAWDVFYR 958 (1038)
Q Consensus 939 l~~~~~~~g~~~~A~~~~~~ 958 (1038)
+..+|...|++++|+..|++
T Consensus 106 ~g~~~~~lg~~eeA~~~~~~ 125 (156)
T d2hr2a1 106 RALALDGLGRGAEAMPEFKK 125 (156)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 69999988888888999999
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.78 E-value=0.0085 Score=29.85 Aligned_cols=20 Identities=20% Similarity=0.203 Sum_probs=6.8
Q ss_pred HHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999943996999999999
Q 001645 974 FIGCLCKVGKSEEALELLSE 993 (1038)
Q Consensus 974 l~~~~~~~g~~~~A~~l~~~ 993 (1038)
++.+|...|++++|+..+++
T Consensus 106 ~g~~~~~lg~~eeA~~~~~~ 125 (156)
T d2hr2a1 106 RALALDGLGRGAEAMPEFKK 125 (156)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 69999988888888999999
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.52 E-value=0.013 Score=28.74 Aligned_cols=39 Identities=13% Similarity=0.020 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 7799999999943998999999999898499999999999
Q 001645 934 VTYTALIQGFANLGKVAEAWDVFYRMKIKGPFPDFRTYSM 973 (1038)
Q Consensus 934 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~d~~~~~~ 973 (1038)
.++..+..++.+.|++++|+..++++.+..|. +..+++.
T Consensus 47 ~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~a~~N 85 (95)
T d1tjca_ 47 SVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHH
T ss_conf 99998726888657739888788779886929-7999999
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.27 E-value=0.018 Score=27.84 Aligned_cols=19 Identities=11% Similarity=0.317 Sum_probs=5.8
Q ss_pred HHHHHHCCCHHHHHHHHHH
Q ss_conf 9999950999899999999
Q 001645 905 VVHFFREKQVGRALEIFER 923 (1038)
Q Consensus 905 i~~~~~~g~~~~A~~~~~~ 923 (1038)
..+|.+.|++++|+..+++
T Consensus 53 g~~~~~~g~~~~A~~~y~~ 71 (95)
T d1tjca_ 53 SYAVYQQGDLDKALLLTKK 71 (95)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH
T ss_conf 2688865773988878877
|