Citrus Sinensis ID: 001646

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------104

MGSLESGLVVPLKRDNLGRSSSRTERQHSFLQRNRSRFSRFLFFKKLDYLLWICTVAVFLFFVVIFQLFLPGSVTVMDESQGSLRDFDKVPADLMFLKEMGLLDFGEEVTFLPLKLMEKFQSEDKDVNLTSVFHRKLHRFGYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVLKLPSEVAFPKSIKELSPKLKEEWQWHLFEAFLNSTHEDRTSRSNRFLNQIELLQSNHTERDSYLPVPETDDSFLYDIWKEEKDIEMLNVRKRREEEELKDRIDQSHGTWDEVYRSAKRADRAKNDLHERDEGELERTGQPLCIYEPYLGEGTWPFLHHRSLYRGIGLSSKGRRPRRDDVDAPSRLPLLNNPYYRDILGEYGAFFAIANRIDRLHKNAWIGFQSWRATANKVSLSRIAENALVDAIQARRHGDALYFWVRMDVDSRNPLRQDFWSFCDAINAGNCKVTFSESLKRMYGIKHELEFLPLMPQDGDTWSVMQSWVLPTRSFLEFVMFSRMFVDALDAQMYDEHHESGRCYLSLSKDKHCYSRLLELLVNVWAYHSARRMVYVNPETGAMQEQHKFKSRRGQMWVRWFSYSTLKSMDEDMAEEADSDHPRRRWLWPSTGEVVWQGVFEKERHLRNKLKEKRKQQSKDKQTRQKRKRRQKVIGKYVKPPPEETENSNSTTILHQ

cccccccccccccccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccccccHHHHHHHccccccccccEEEEEEHHHHHHHcccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHccccEEEEccccccccccccccccEEEEEccHHHHHHHHHHHcccccccEEEEEcccccHHHccccccHHHHHHHHHHHHHHHcccEEEEccccccHHHcccccccEEEEcccccccccccccccccHHHHHHHcccccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccHHHHHHHHHHccccccEEEEccccccHHHHHHHccEEEEccccccccHHHHHHHHHHccccEEEcccccccccccccccEEEEccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHcccccHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccHHHHcccccEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHcccccEEEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccccHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHcccccccccEEEEEEcccccccccHHHHHHHccccccccccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccc

ccccccccccccccccccccccccHccccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccHHHccccEEccccEEEccHHHHHHHHHHccccccHHHcccccEEccccccEEEEEEccccccHHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHccccEEEEccccccccEEEHHcccEEEEccHccHHHHHHHHHcccccccEEEEEcHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccEEEEcccHHHHHHHHcccccEEEEccccccHHccccccHHHHHHHHHHHccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHcHHHccccccEEEEEEEccccccHHHHHHHHHHHcccccccEEEEcccccHHHHHHHccEEEEcccccccccHHHHHHHHHccccEEEEcccccHEEEEccccEEEEccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcccccccccccHHHHHHHHHcHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcHHHcccccHHHHcccccEEEEEccccccccccccccccHccEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHcHHHHHHHHHHHcccHHHHHHHHHHHHHcccccEEEEEEEcccccccccccccHHHHHHHHcccHHHHHHHHHHHHHccccHHHcccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccccccHHHHHHHHHHHHHHHHccEEEEEccccccHHHHcccccccccEEEEEEEHHHHccccHHHHHHHccccccccEEccccccEEEccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccEEcccccHHccccccEEEEcc

mgslesglvvplkrdnlgrsssrtERQHSFLQRNRSRFSRFLFFKKLDYLLWICTVAVFLFFVVIFQLflpgsvtvmdesqgslrdfdkvpADLMFLKemglldfgeevtfLPLKLMEKFqsedkdvnltsVFHRklhrfgyrkpqlalvfpdllidpqqLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEAKVVISNimqepfkslplvwtihegtlaTRARNYASSGQLELLNDWKKVFNratvvvfpdyvlpmmysafdagnyyvipgspakaweadtnmdlynDTVRvkmgfkpdDLVIAIVGTQFMYRGLWLEHALILRALLplfsevsvenesnspIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKhmaaegdvdsvlnTADVVIYgsfleeqtfPEILVKALCfrkpiiapdlsniRKYVDdrvngylfpkeNIKALTHIILQVItngkispfarNIASIGRRSVKNLMALETIEGYAMLLENVLklpsevafpksikeLSPKLKEEWQWHLFEAFLNsthedrtsrSNRFLNQIELLQSnhterdsylpvpetddsfLYDIWKEEKDIEMLNVRKRREEEELKDRIDQSHGTWDEVYRSAKRAdrakndlherdegelertgqplciyepylgegtwpflhhrslyrgiglsskgrrprrddvdapsrlpllnnpyyrdiLGEYGAFFAIANRIDRLHKNAWIGFQSWRATANKVSLSRIAENALVDAIQARRHGDALYFWVRMdvdsrnplrqdFWSFcdainagnckvTFSESLKRMYGIkheleflplmpqdgdtwsvmqswvlptrsFLEFVMFSRMFVDaldaqmydehhesgrcylslskdkhCYSRLLELLVNVWAYHSARRmvyvnpetgamqeqhkfksrrgqmwVRWFSYSTLKSMDEDmaeeadsdhprrrwlwpstgeVVWQGVFEKERHLRNKLKEKRKQQSKDKQTRQKRKRRQKVIgkyvkpppeetensnsttilhq

mgslesglvvplkrdnlgrsssrterqhsflqrnrsrfsRFLFFKKLDYLLWICTVAVFLFFVVIFQLFLPGSVTVMDESQGSLRDFDKVPADLMFLKEMGLLDFGEEVTFLPLKLMEKFQSEDKDVNLTSVFHRKLHRFGYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIiapdlsnirkYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVLKLPSEVAFPKSIKELSPKLKEEWQWHLFEAFLNSTHEDRTSRSNRFLNQIELLQsnhterdsylpvpetDDSFLYDIWkeekdiemlnvrkrreeeelkdridqshgtwdevyrsakradrakndlherdegelertgqplCIYEPYLGEGTWPFLHHRSLYRGiglsskgrrprrddvdapsrlpllnnPYYRDILGEYGAFFAIANRIDRLHKNAWIGFQSWRATANKVSLSRIAENALVDAIQARRHGDALYFWVRMDVDSRNPLRQDFWSFCDAINAGNCKVTFSESLKRMYGIKHELEFLPLMPQDGDTWSVMQSWVLPTRSFLEFVMFSRMFVDALDAQMYDEHHESGRCYLSLSKDKHCYSRLLELLVNVWAYHSARRMVYVNPETGAMQEqhkfksrrgqmwVRWFSYSTLKSMDEDMAEEadsdhprrrwLWPSTGEVVWQGVFEKERHLrnklkekrkqqskdkqtrqkrkrrqkvigkyvkpppeetensnsttilhq

MGSLESGLVVPLKRDNLGRSSSRTERQHsflqrnrsrfsrflffkklDYLLWICTVAvflffvvifqlflPGSVTVMDESQGSLRDFDKVPADLMFLKEMGLLDFGEEVTFLPLKLMEKFQSEDKDVNLTSVFHRKLHRFGYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFsevsvenesnsPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVLKLPSEVAFPKSIKELSPKLKEEWQWHLFEAFLNSTHEDRTSRSNRFLNQIELLQSNHTERDSYLPVPETDDSFLYDIWKEEKDIEMLNVrkrreeeelkdrIDQSHGTWDEVYRSAKRADRAKNDLHERDEGELERTGQPLCIYEPYLGEGTWPFLHHRSLYRGIGLSSKGRRPRRDDVDAPSRLPLLNNPYYRDILGEYGAFFAIANRIDRLHKNAWIGFQSWRATANKVSLSRIAENALVDAIQARRHGDALYFWVRMDVDSRNPLRQDFWSFCDAINAGNCKVTFSESLKRMYGIKHELEFLPLMPQDGDTWSVMQSWVLPTRSFLEFVMFSRMFVDALDAQMYDEHHESGRCYLSLSKDKHCYSRLLELLVNVWAYHSARRMVYVNPETGAMQEQHKFKSRRGQMWVRWFSYSTLKsmdedmaeeadsdHPRRRWLWPSTGEVVWQGVFEKERHLRNKLKEkrkqqskdkqtrqkrkrrqkVIGKYVKPPPEETENSNSTTILHQ

************************************RFSRFLFFKKLDYLLWICTVAVFLFFVVIFQLFLPGSVTVMDESQGSLRDFDKVPADLMFLKEMGLLDFGEEVTFLPLKLMEKFQSEDKDVNLTSVFHRKLHRFGYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVEN***SPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVLKLPSEVAFPKSIKELSPKLKEEWQWHLFEAFLNS************LNQIEL***********LPVPETDDSFLYDIWKEE*********************************************************QPLCIYEPYLGEGTWPFLHHRSLYRGIGL*****************LPLLNNPYYRDILGEYGAFFAIANRIDRLHKNAWIGFQSWRATANKVSLSRIAENALVDAIQARRHGDALYFWVRMDVDSRNPLRQDFWSFCDAINAGNCKVTFSESLKRMYGIKHELEFLPLMPQDGDTWSVMQSWVLPTRSFLEFVMFSRMFVDALDAQMYDEHHESGRCYLSLSKDKHCYSRLLELLVNVWAYHSARRMVYVNPET***********RRGQMWVRWFSYSTL******************RWLWPSTGEVVWQGVFE*******************************************************

**************************************SRFLFFKKLDYLLWICTVAVFLFFVVIFQLFLPGSVTVM*************************LDFGEEVTFLPLK************************FGYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNM*****TVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVLKL********************WQWHLFEA****************************************DSFLYDIWKEEKDIEMLNVR***********IDQSHGTWDEVYRSA*****************LERTGQPLCIYEPYLGEGTWPFLHHRSLYR******************PSRLPLLNNPYYRDILGEYGAFFAIANRIDRLHKNAWIGFQSWRATANKVSLSRIAENALVDAIQARRHGDALYFWVRMDVDSRNPLRQDFWSFCDAINAGNCKVTFSESLKRMYGIKHELEFLPLMPQDGDTWSVMQSWVLPTRSFLEFVMFSRMFVDALDAQMYDEHHESGRCYLSLSKDKHCYSRLLELLVNVWAYHSARRMVYVNPET***************MWVRWFSYSTLKSMDEDMAEEADSDHPRRRWLWPSTGEVVWQGVFE*******************************************************

MGSLESGLVVPLKRDNL**************QRNRSRFSRFLFFKKLDYLLWICTVAVFLFFVVIFQLFLPGSVTVMDESQGSLRDFDKVPADLMFLKEMGLLDFGEEVTFLPLKLMEKFQSEDKDVNLTSVFHRKLHRFGYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVLKLPSEVAFPKSIKELSPKLKEEWQWHLFEAFLNSTHEDRTSRSNRFLNQIELLQSNHTERDSYLPVPETDDSFLYDIWKEEKDIEMLNVRKRREEEELKDRIDQSHGTWDEVYRSAKRADRAKNDLHERDEGELERTGQPLCIYEPYLGEGTWPFLHHRSLYRGIGL***********VDAPSRLPLLNNPYYRDILGEYGAFFAIANRIDRLHKNAWIGFQSWRATANKVSLSRIAENALVDAIQARRHGDALYFWVRMDVDSRNPLRQDFWSFCDAINAGNCKVTFSESLKRMYGIKHELEFLPLMPQDGDTWSVMQSWVLPTRSFLEFVMFSRMFVDALDAQMYDEHHESGRCYLSLSKDKHCYSRLLELLVNVWAYHSARRMVYVNPETGAM*********RGQMWVRWFSYSTLKSMD************RRRWLWPSTGEVVWQGVFEKERHLRNK**********************KVIGKYVKP****************

********************************RNRSRFSRFLFFKKLDYLLWICTVAVFLFFVVIFQLFLPGSVTVMDESQGSLRDFDKVPADLMFLKEMGLLDFGEEVTFLPLKLMEKFQSEDKDVNLTSVFHRKLHRFGYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVLKLPSEVAFPKSIKELSPKLKEEWQWHLFEAFLNSTHEDRTSRSNRFLNQIELLQS****************SFLYDIWKEEKDIEMLNVRKRREEEELKDRIDQSHGTWDEVYRSAKRADRAKNDLHERDEGELERTGQPLCIYEPYLGEGTWPFLHHRSLYRGIGLSS*******DDVDAPSRLPLLNNPYYRDILGEYGAFFAIANRIDRLHKNAWIGFQSWRATANKVSLSRIAENALVDAIQARRHGDALYFWVRMDVDSRNPLRQDFWSFCDAINAGNCKVTFSESLKRMYGIKHELEFLPLMPQDGDTWSVMQSWVLPTRSFLEFVMFSRMFVDALDAQMYDEHHESGRCYLSLSKDKHCYSRLLELLVNVWAYHSARRMVYVNPETGAMQEQHKFKSRRGQMWVRWFSYSTLKSMDEDMAEEADSDHPRRRWLWPSTGEVVWQGVFEKERHLRNKLKEKRKQQSKDKQTRQKRKRRQKVIGKYVKPPP*******ST*****

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MGSLESGLVVPLKRDNLGRSSSRTERQHSFLQRNRSRFSRFLFFKKLDYLLWICTVAVFLFFVVIFQLFLPGSVTVMDESQGSLRDFDKVPADLMFLKEMGLLDFGEEVTFLPLKLMEKFQSEDKDVNLTSVFHRKLHRFGYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVLKLPSEVAFPKSIKELSPKLKEEWQWHLFEAFLNSTHEDRTSRSNRFLNQIELLQSNHTERDSYLPVPETDDSFLYDxxxxxxxxxxxxxxxxxxxxxxxxxxxxSHGTWDEVYRSAKRADRAKNDLHERDEGELERTGQPLCIYEPYLGEGTWPFLHHRSLYRGIGLSSKGRRPRRDDVDAPSRLPLLNNPYYRDILGEYGAFFAIANRIDRLHKNAWIGFQSWRATANKVSLSRIAENALVDAIQARRHGDALYFWVRMDVDSRNPLRQDFWSFCDAINAGNCKVTFSESLKRMYGIKHELEFLPLMPQDGDTWSVMQSWVLPTRSFLEFVMFSRMFVDALDAQMYDEHHESGRCYLSLSKDKHCYSRLLELLVNVWAYHSARRMVYVNPETGAMQEQHKFKSRRGQMWVRWFSYSTLKSMDEDMAEEADSDHPRRRWLWPSTGEVVWQGVFEKERHLRNKLKEKRKQQSKDKQTRQKRKRRQKVIGKYVKPPPEETENSNSTTILHQ

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1038
359489827		1026	PREDICTED: uncharacterized protein LOC10	0.987	0.999	0.687	0.0
147777557		1040	hypothetical protein VITISV_003086 [Viti	0.987	0.985	0.677	0.0
297745376		1026	unnamed protein product [Vitis vinifera]	0.982	0.994	0.684	0.0
356522554		1034	PREDICTED: uncharacterized protein LOC10	0.985	0.989	0.644	0.0
224127812		990	predicted protein [Populus trichocarpa]	0.947	0.992	0.660	0.0
449441374		1037	PREDICTED: uncharacterized protein LOC10	0.988	0.989	0.666	0.0
449495248		1037	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.988	0.989	0.666	0.0
224064104		990	predicted protein [Populus trichocarpa]	0.942	0.987	0.662	0.0
356560308		1035	PREDICTED: uncharacterized protein LOC10	0.987	0.990	0.648	0.0
255541752		935	transferase, transferring glycosyl group	0.880	0.977	0.670	0.0

>gi\|359489827\|ref\|XP_002276292.2\| PREDICTED: uncharacterized protein LOC100262009 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1493 bits (3864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 712/1036 (68%), Positives = 850/1036 (82%), Gaps = 11/1036 (1%)

Query: 1    MGSLESGLVVPLKRDNLGRSSSRTERQHSFLQRNRSRFSRFLFFKKLDYLLWICTVAVFL 60
            MGSLE+G  VP+KRD L RSSS    + S  QR   RFSRFLFF KLDYL W+CTVAVF 
Sbjct: 1    MGSLENG--VPVKRDPLLRSSSN---KGSAFQRPIVRFSRFLFFGKLDYLQWVCTVAVFC 55

Query: 61   FFVVIFQLFLPGSVTVMDESQGSLRDFDKVPADLMFLKEMGLLDFGEEVTFLPLKLMEKF 120
            FFVV+FQ+FLPG   +M++S  SL++ +    DL F+K +G LDFGE + F P KL++KF
Sbjct: 56   FFVVLFQMFLPG--LIMEKSGESLKNMENGYGDLSFIKNIGGLDFGEGIRFEPSKLLQKF 113

Query: 121  QSEDKDVNLTSVFHRKLHRFGYRKPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVY 180
            Q E  +VNL+S   R  HRFGYRKPQLALVFPDLL+DPQQL MVT+A AL E+GY IQVY
Sbjct: 114  QKEADEVNLSSA-SRLRHRFGYRKPQLALVFPDLLVDPQQLLMVTVASALLEMGYTIQVY 172

Query: 181  SLEDGRAHEVWRNIGVPVAILQTGREKASFVNWLNYDGILVNSLEAKVVISNIMQEPFKS 240
            SLEDG  + +WRN+G PV I+++  + A+ V+WLNYDGI+VNSLEA+ V+S  +QEPFKS
Sbjct: 173  SLEDGPVNAIWRNVGFPVTIIRSNAKSAAVVDWLNYDGIIVNSLEARGVVSCFVQEPFKS 232

Query: 241  LPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFPDYVLPMMYSAFDAGNY 300
            LPL+WTI EGTLATR R Y  +G++EL+NDWKKVFNRAT VVFP+YVLPM+YS FD+GNY
Sbjct: 233  LPLIWTIPEGTLATRLRQYNLTGKIELVNDWKKVFNRATAVVFPNYVLPMIYSTFDSGNY 292

Query: 301  YVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRAL 360
            +VIPGSPA+AWE D  M  + D+ RVKMG+ PDD VIA+V +QF+Y+GLWLEHALIL+AL
Sbjct: 293  FVIPGSPAQAWEVDNFMASHRDSPRVKMGYGPDDFVIALVRSQFLYKGLWLEHALILQAL 352

Query: 361  LPLFSEVSVENESNSPIKVMILSGDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE-GDVDS 419
            LPL +E  V+N SNS +K++I SG+S +NYSV +EAIA  L YP GVVKH+A + G+ D+
Sbjct: 353  LPLVAEFPVDNNSNSHLKILITSGNSANNYSVAVEAIALKLRYPKGVVKHIAIDVGEADN 412

Query: 420  VLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFPKENIK 479
            VL  AD+VIYGSFLEEQ+FP+IL+KA+ F K IIAPDLS I+KYVDDRVNGYLFPKE I 
Sbjct: 413  VLAAADIVIYGSFLEEQSFPDILIKAMSFGKLIIAPDLSIIKKYVDDRVNGYLFPKEKIS 472

Query: 480  ALTHIILQVITNGKISPFARNIASIGRRSVKNLMALETIEGYAMLLENVLKLPSEVAFPK 539
             LT +ILQ+I+ GK+SP   NIAS+G+ + KNLM +ET+EGYA LLEN+LK PSEVA PK
Sbjct: 473  VLTQVILQMISEGKLSPLVHNIASLGKSTAKNLMVMETVEGYASLLENLLKFPSEVASPK 532

Query: 540  SIKELSPKLKEEWQWHLFEAFLNSTHEDRTSRSNRFLNQIELLQSNHTERDSYLPVPETD 599
            ++ E+ PKLKEEWQW+LF A  +ST+ +RTSRS+RFL++ E   S      S      TD
Sbjct: 533  AVTEIPPKLKEEWQWNLFAASGHSTYTNRTSRSHRFLDKFEEQWSQSQTGGS--GSVTTD 590

Query: 600  DSFLYDIWKEEKDIEMLNVRKRREEEELKDRIDQSHGTWDEVYRSAKRADRAKNDLHERD 659
            +SF Y IW+EEK I + N +KRREE+ELKDR DQ  G+W++VYRSAKRADRAKNDLHERD
Sbjct: 591  ESFPYSIWEEEKLIGIANAKKRREEDELKDRTDQPRGSWEDVYRSAKRADRAKNDLHERD 650

Query: 660  EGELERTGQPLCIYEPYLGEGTWPFLHHRSLYRGIGLSSKGRRPRRDDVDAPSRLPLLNN 719
            +GELERTGQPLCIYEPY GEGTWPFLH  SLYRGIGLS+KGRR   DD+DAPSRLPLLNN
Sbjct: 651  DGELERTGQPLCIYEPYFGEGTWPFLHATSLYRGIGLSTKGRRREADDIDAPSRLPLLNN 710

Query: 720  PYYRDILGEYGAFFAIANRIDRLHKNAWIGFQSWRATANKVSLSRIAENALVDAIQARRH 779
            PYYRD LGEYGAFFAIANR+DR+H+NAWIGFQSWRATA   SLS+IAE AL++AIQAR+H
Sbjct: 711  PYYRDALGEYGAFFAIANRVDRIHRNAWIGFQSWRATARNASLSKIAETALLNAIQARKH 770

Query: 780  GDALYFWVRMDVDSRNPLRQDFWSFCDAINAGNCKVTFSESLKRMYGIKHELEFLPLMPQ 839
            GD LYFWVRMD+D RNP + DFWSFCDAINAGNCK  FSE+LK+MYGIK + + LP MP 
Sbjct: 771  GDTLYFWVRMDMDPRNPSQLDFWSFCDAINAGNCKFAFSEALKKMYGIKRDWDSLPPMPV 830

Query: 840  DGDTWSVMQSWVLPTRSFLEFVMFSRMFVDALDAQMYDEHHESGRCYLSLSKDKHCYSRL 899
            DGD WSVMQSW LPTRSFLEFVMFSRMFVDALDAQ+Y++HH+ G CYLSLSKDKHCYSR+
Sbjct: 831  DGDAWSVMQSWALPTRSFLEFVMFSRMFVDALDAQIYNDHHQRGHCYLSLSKDKHCYSRV 890

Query: 900  LELLVNVWAYHSARRMVYVNPETGAMQEQHKFKSRRGQMWVRWFSYSTLKSMDEDMAEEA 959
            LELLVNVWAYH A+RMVYVNP+TG M E HK K+RRG MWV+WFSY+TLKSMDE++AEE+
Sbjct: 891  LELLVNVWAYHGAKRMVYVNPQTGEMHEHHKLKNRRGHMWVKWFSYATLKSMDEELAEES 950

Query: 960  DSDHPRRRWLWPSTGEVVWQGVFEKERHLRNKLKEKRKQQSKDKQTRQKRKRRQKVIGKY 1019
            D DHP RRWLWPSTGEV WQG++ +ER+ R + KEKR+QQSKDK  R +R+  QKVIGKY
Sbjct: 951  DDDHPMRRWLWPSTGEVFWQGIYLRERNQRLQQKEKRRQQSKDKLLRMRRRSHQKVIGKY 1010

Query: 1020 VKPPPEETENSNSTTI 1035
            VKPPPE+ ENSNSTT+
Sbjct: 1011 VKPPPEDVENSNSTTV 1026

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|147777557\|emb\|CAN69310.1\| hypothetical protein VITISV_003086 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297745376\|emb\|CBI40456.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356522554\|ref\|XP_003529911.1\| PREDICTED: uncharacterized protein LOC100806723 [Glycine max]	Back alignment and taxonomy information

>gi\|224127812\|ref\|XP_002320170.1\| predicted protein [Populus trichocarpa] gi\|222860943\|gb\|EEE98485.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449441374\|ref\|XP_004138457.1\| PREDICTED: uncharacterized protein LOC101212216 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449495248\|ref\|XP_004159777.1\| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101212216 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224064104\|ref\|XP_002301386.1\| predicted protein [Populus trichocarpa] gi\|222843112\|gb\|EEE80659.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356560308\|ref\|XP_003548435.1\| PREDICTED: uncharacterized protein LOC100807455 [Glycine max]	Back alignment and taxonomy information

>gi\|255541752\|ref\|XP_002511940.1\| transferase, transferring glycosyl groups, putative [Ricinus communis] gi\|223549120\|gb\|EEF50609.1\| transferase, transferring glycosyl groups, putative [Ricinus communis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00026958001	SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (1026 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1038
pfam00534		158	pfam00534, Glycos_transf_1, Glycosyl transferases	1e-09
cd03801		374	cd03801, GT1_YqgM_like, This family is most closel	1e-09
COG0438		381	COG0438, RfaG, Glycosyltransferase [Cell envelope	2e-06
cd03823		359	cd03823, GT1_ExpE7_like, This family is most close	2e-05
cd03808		359	cd03808, GT1_cap1E_like, This family is most close	1e-04
cd03825		365	cd03825, GT1_wcfI_like, This family is most closel	2e-04
cd03798		377	cd03798, GT1_wlbH_like, This family is most closel	0.002
cd03794		394	cd03794, GT1_wbuB_like, This family is most closel	0.003

>gnl\|CDD\|215979 pfam00534, Glycos_transf_1, Glycosyl transferases group 1	Back alignment and domain information

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 415 GDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRVNGYLFP 474
            D+  +   AD+ +  S  E   F  +L++A+    P+IA D+    + V D   G L  
Sbjct: 70  EDLIELYRIADLFVLPSRYE--GFGLVLLEAMAAGVPVIATDVGGPAEIVKDGETGLLVD 127

Query: 475 KENIKALTHIILQVITNGKISPFARNIASIGRR 507
             + +AL   I +++ + +       +    R+
Sbjct: 128 PGDAEALAEAIEKLLKDEE---LRERLGENARK 157

Mutations in this domain of human PIGA lead to disease (Paroxysmal Nocturnal haemoglobinuria). Members of this family transfer activated sugars to a variety of substrates, including glycogen, Fructose-6-phosphate and lipopolysaccharides. Members of this family transfer UDP, ADP, GDP or CMP linked sugars. The eukaryotic glycogen synthases may be distant members of this family. Length = 158

>gnl\|CDD\|99974 cd03801, GT1_YqgM_like, This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known	Back alignment and domain information

>gnl\|CDD\|223515 COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|99993 cd03823, GT1_ExpE7_like, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>gnl\|CDD\|99980 cd03808, GT1_cap1E_like, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>gnl\|CDD\|99994 cd03825, GT1_wcfI_like, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>gnl\|CDD\|99971 cd03798, GT1_wlbH_like, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>gnl\|CDD\|99968 cd03794, GT1_wbuB_like, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1038
TIGR03088		374	stp2 sugar transferase, PEP-CTERM/EpsH1 system ass	100.0
TIGR03449		405	mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-ino	100.0
cd04962		371	GT1_like_5 This family is most closely related to	100.0
PRK15179		694	Vi polysaccharide biosynthesis protein TviE; Provi	100.0
TIGR02472		439	sucr_P_syn_N sucrose-phosphate synthase, putative,	100.0
PLN02871		465	UDP-sulfoquinovose:DAG sulfoquinovosyltransferase	100.0
cd03796		398	GT1_PIG-A_like This family is most closely related	100.0
cd03819		355	GT1_WavL_like This family is most closely related	100.0
PRK10307		412	putative glycosyl transferase; Provisional	100.0
cd03807		365	GT1_WbnK_like This family is most closely related	100.0
cd03792		372	GT1_Trehalose_phosphorylase Trehalose phosphorylas	100.0
cd04951		360	GT1_WbdM_like This family is most closely related	100.0
PRK15427		406	colanic acid biosynthesis glycosyltransferase WcaL	100.0
TIGR02149		388	glgA_Coryne glycogen synthase, Corynebacterium fam	100.0
cd03805		392	GT1_ALG2_like This family is most closely related	100.0
PRK00654		466	glgA glycogen synthase; Provisional	100.0
TIGR02468		1050	sucrsPsyn_pln sucrose phosphate synthase/possible	100.0
PRK15484		380	lipopolysaccharide 1,2-N-acetylglucosaminetransfer	100.0
cd03812		358	GT1_CapH_like This family is most closely related	100.0
cd03821		375	GT1_Bme6_like This family is most closely related	100.0
PLN02316		1036	synthase/transferase	99.98
PLN02939		977	transferase, transferring glycosyl groups	99.98
TIGR02095		473	glgA glycogen/starch synthases, ADP-glucose type.	99.98
cd03820		348	GT1_amsD_like This family is most closely related	99.98
TIGR02470		784	sucr_synth sucrose synthase. This model represents	99.97
cd03800		398	GT1_Sucrose_synthase This family is most closely r	99.97
PRK15490		578	Vi polysaccharide biosynthesis protein TviE; Provi	99.97
cd03818		396	GT1_ExpC_like This family is most closely related	99.97
PRK14099		485	glycogen synthase; Provisional	99.97
cd05844		367	GT1_like_7 Glycosyltransferases catalyze the trans	99.97
cd03808		359	GT1_cap1E_like This family is most closely related	99.97
cd03814		364	GT1_like_2 This family is most closely related to	99.97
cd03822		366	GT1_ecORF704_like This family is most closely rela	99.97
cd03817		374	GT1_UGDG_like This family is most closely related	99.97
cd03791		476	GT1_Glycogen_synthase_DULL1_like This family is mo	99.97
cd03825		365	GT1_wcfI_like This family is most closely related	99.97
cd03801		374	GT1_YqgM_like This family is most closely related	99.97
PLN00142		815	sucrose synthase	99.97
PRK09922		359	UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D	99.97
cd03813		475	GT1_like_3 This family is most closely related to	99.97
cd04955		363	GT1_like_6 This family is most closely related to	99.97
cd03795		357	GT1_like_4 This family is most closely related to	99.97
cd03811		353	GT1_WabH_like This family is most closely related	99.97
PRK10125		405	putative glycosyl transferase; Provisional	99.97
cd03799		355	GT1_amsK_like This is a family of GT1 glycosyltran	99.97
PRK14098		489	glycogen synthase; Provisional	99.97
cd03802		335	GT1_AviGT4_like This family is most closely relate	99.97
cd03794		394	GT1_wbuB_like This family is most closely related	99.97
cd03798		377	GT1_wlbH_like This family is most closely related	99.97
PLN02949		463	transferase, transferring glycosyl groups	99.96
cd03823		359	GT1_ExpE7_like This family is most closely related	99.96
cd03809		365	GT1_mtfB_like This family is most closely related	99.96
cd03806		419	GT1_ALG11_like This family is most closely related	99.96
PLN02846		462	digalactosyldiacylglycerol synthase	99.96
cd03816		415	GT1_ALG1_like This family is most closely related	99.96
TIGR02918		500	accessory Sec system glycosylation protein GtfA. M	99.95
TIGR03087		397	stp1 sugar transferase, PEP-CTERM/EpsH1 system ass	99.94
cd04946		407	GT1_AmsK_like This family is most closely related	99.94
KOG1111		426	consensus N-acetylglucosaminyltransferase complex,	99.94
PLN02501		794	digalactosyldiacylglycerol synthase	99.93
cd03804		351	GT1_wbaZ_like This family is most closely related	99.93
cd04949		372	GT1_gtfA_like This family is most closely related	99.93
PRK00726		357	murG undecaprenyldiphospho-muramoylpentapeptide be	99.92
PHA01630		331	putative group 1 glycosyl transferase	99.91
PLN02275		371	transferase, transferring glycosyl groups	99.91
cd03785		350	GT1_MurG MurG is an N-acetylglucosaminyltransferas	99.91
PRK05749		425	3-deoxy-D-manno-octulosonic-acid transferase; Revi	99.89
TIGR01133		348	murG undecaprenyldiphospho-muramoylpentapeptide be	99.89
PHA01633		335	putative glycosyl transferase group 1	99.88
PF00534		172	Glycos_transf_1: Glycosyl transferases group 1; In	99.88
cd03788		460	GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a	99.87
PRK13609		380	diacylglycerol glucosyltransferase; Provisional	99.87
KOG0853		495	consensus Glycosyltransferase [Cell wall/membrane/	99.86
cd03793		590	GT1_Glycogen_synthase_GSY2_like Glycogen synthase,	99.86
TIGR02400		456	trehalose_OtsA alpha,alpha-trehalose-phosphate syn	99.84
cd01635		229	Glycosyltransferase_GTB_type Glycosyltransferases	99.82
COG0297		487	GlgA Glycogen synthase [Carbohydrate transport and	99.81
PRK13608		391	diacylglycerol glucosyltransferase; Provisional	99.81
PLN02605		382	monogalactosyldiacylglycerol synthase	99.8
PLN03063		797	alpha,alpha-trehalose-phosphate synthase (UDP-form	99.79
PRK14501		726	putative bifunctional trehalose-6-phosphate syntha	99.74
cd04950		373	GT1_like_1 Glycosyltransferases catalyze the trans	99.73
COG0438		381	RfaG Glycosyltransferase [Cell envelope biogenesis	99.72
PRK00025		380	lpxB lipid-A-disaccharide synthase; Reviewed	99.72
TIGR00236		365	wecB UDP-N-acetylglucosamine 2-epimerase. Epimeras	99.72
KOG1387		465	consensus Glycosyltransferase [Cell wall/membrane/	99.66
TIGR02398		487	gluc_glyc_Psyn glucosylglycerol-phosphate synthase	99.65
cd03786		363	GT1_UDP-GlcNAc_2-Epimerase Bacterial members of th	99.64
PRK09814		333	beta-1,6-galactofuranosyltransferase; Provisional	99.59
KOG2941		444	consensus Beta-1,4-mannosyltransferase [Posttransl	99.54
PF13692		135	Glyco_trans_1_4: Glycosyl transferases group 1; PD	99.53
TIGR00215		385	lpxB lipid-A-disaccharide synthase. Lipid-A precur	99.53
PLN03064		934	alpha,alpha-trehalose-phosphate synthase (UDP-form	99.52
TIGR03713		519	acc_sec_asp1 accessory Sec system protein Asp1. Th	99.51
COG0707		357	MurG UDP-N-acetylglucosamine:LPS N-acetylglucosami	99.37
PRK12446		352	undecaprenyldiphospho-muramoylpentapeptide beta-N-	99.32
PF13524		92	Glyco_trans_1_2: Glycosyl transferases group 1	99.13
PF05693		633	Glycogen_syn: Glycogen synthase; InterPro: IPR0086	99.08
PRK10117		474	trehalose-6-phosphate synthase; Provisional	99.0
PF00982		474	Glyco_transf_20: Glycosyltransferase family 20; In	98.98
TIGR02094		601	more_P_ylases alpha-glucan phosphorylases. This fa	98.93
TIGR02919		438	accessory Sec system glycosyltransferase GtfB. Mem	98.92
COG1519		419	KdtA 3-deoxy-D-manno-octulosonic-acid transferase	98.89
TIGR03492		396	conserved hypothetical protein. This protein famil	98.82
PLN02205		854	alpha,alpha-trehalose-phosphate synthase [UDP-form	98.72
COG0380		486	OtsA Trehalose-6-phosphate synthase [Carbohydrate	98.72
TIGR03590		279	PseG pseudaminic acid biosynthesis-associated prot	98.71
COG3914		620	Spy Predicted O-linked N-acetylglucosamine transfe	98.67
PF13439		177	Glyco_transf_4: Glycosyltransferase Family 4; PDB:	98.55
cd03784		401	GT1_Gtf_like This family includes the Gtfs, a grou	98.53
TIGR01426		392	MGT glycosyltransferase, MGT family. This model de	98.51
cd04299		778	GT1_Glycogen_Phosphorylase_like This family is mos	98.47
TIGR03568		365	NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase,	98.47
PF13844		468	Glyco_transf_41: Glycosyl transferase family 41; P	98.45
PF13579		160	Glyco_trans_4_4: Glycosyl transferase 4-like domai	98.41
PF04007		335	DUF354: Protein of unknown function (DUF354); Inte	98.33
TIGR00661		321	MJ1255 conserved hypothetical protein. This model	98.29
PF13528		318	Glyco_trans_1_3: Glycosyl transferase family 1	98.27
COG0381		383	WecB UDP-N-acetylglucosamine 2-epimerase [Cell env	98.24
PF13477		139	Glyco_trans_4_2: Glycosyl transferase 4-like	98.18
COG0763		381	LpxB Lipid A disaccharide synthetase [Cell envelop	98.02
PRK01021		608	lpxB lipid-A-disaccharide synthase; Reviewed	97.98
PF02684		373	LpxB: Lipid-A-disaccharide synthetase; InterPro: I	97.96
PHA03392		507	egt ecdysteroid UDP-glucosyltransferase; Provision	97.83
PF02350		346	Epimerase_2: UDP-N-acetylglucosamine 2-epimerase;	97.8
COG1819		406	Glycosyl transferases, related to UDP-glucuronosyl	97.78
COG4641		373	Uncharacterized protein conserved in bacteria [Fun	97.77
COG3980		318	spsG Spore coat polysaccharide biosynthesis protei	97.73
COG1817		346	Uncharacterized protein conserved in archaea [Func	97.51
PRK02797		322	4-alpha-L-fucosyltransferase; Provisional	97.49
PF07429		360	Glyco_transf_56: 4-alpha-L-fucosyltransferase glyc	97.37
PRK14089		347	ipid-A-disaccharide synthase; Provisional	97.17
COG4671		400	Predicted glycosyl transferase [General function p	97.16
KOG3742		692	consensus Glycogen synthase [Carbohydrate transpor	97.03
PF08323		245	Glyco_transf_5: Starch synthase catalytic domain;	96.99
PF04464		369	Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate	96.97
PF04101		167	Glyco_tran_28_C: Glycosyltransferase family 28 C-t	96.88
PF09314		185	DUF1972: Domain of unknown function (DUF1972); Int	96.74
PF11440		355	AGT: DNA alpha-glucosyltransferase; InterPro: IPR0	96.36
KOG4626		966	consensus O-linked N-acetylglucosamine transferase	96.04
PRK10017		426	colanic acid biosynthesis protein; Provisional	95.83
PF06258		311	Mito_fiss_Elm1: Mitochondrial fission ELM1; InterP	95.0
COG3660		329	Predicted nucleoside-diphosphate-sugar epimerase [	94.7
cd03789		279	GT1_LPS_heptosyltransferase Lipopolysaccharide hep	94.34
KOG1050		732	consensus Trehalose-6-phosphate synthase component	94.15
PLN02670		472	transferase, transferring glycosyl groups	93.44
PLN02448		459	UDP-glycosyltransferase family protein	92.93
COG0058		750	GlgP Glucan phosphorylase [Carbohydrate transport	92.21
PRK10916		348	ADP-heptose:LPS heptosyltransferase II; Provisiona	92.01
PLN02210		456	UDP-glucosyl transferase	91.67
PF00201		500	UDPGT: UDP-glucoronosyl and UDP-glucosyl transfera	91.58
PLN02562		448	UDP-glycosyltransferase	90.82
PLN02863		477	UDP-glucoronosyl/UDP-glucosyl transferase family p	90.75
PLN03004		451	UDP-glycosyltransferase	90.27
PLN02410		451	UDP-glucoronosyl/UDP-glucosyl transferase family p	90.14
TIGR02195		334	heptsyl_trn_II lipopolysaccharide heptosyltransfer	89.97
COG0859		334	RfaF ADP-heptose:LPS heptosyltransferase [Cell env	89.75
PF00343		713	Phosphorylase: Carbohydrate phosphorylase; InterPr	89.73
PLN03007		482	UDP-glucosyltransferase family protein	89.54
PLN02208		442	glycosyltransferase family protein	88.19
PF04230		286	PS_pyruv_trans: Polysaccharide pyruvyl transferase	87.86
PRK14986		815	glycogen phosphorylase; Provisional	86.83
PF10087		97	DUF2325: Uncharacterized protein conserved in bact	86.76
PRK14985		798	maltodextrin phosphorylase; Provisional	86.71
PF05159		269	Capsule_synth: Capsule polysaccharide biosynthesis	86.52
PLN02167		475	UDP-glycosyltransferase family protein	86.18
PLN02152		455	indole-3-acetate beta-glucosyltransferase	86.12
PLN02173		449	UDP-glucosyl transferase family protein	86.03
PRK10422		352	lipopolysaccharide core biosynthesis protein; Prov	85.76
PLN02764		453	glycosyltransferase family protein	85.38
TIGR02093		794	P_ylase glycogen/starch/alpha-glucan phosphorylase	84.36
cd04300		797	GT1_Glycogen_Phosphorylase This is a family of oli	83.59
PF01075		247	Glyco_transf_9: Glycosyltransferase family 9 (hept	82.84
PLN02554		481	UDP-glycosyltransferase family protein	82.06
PF15024		559	Glyco_transf_18: Glycosyltransferase family 18	81.1
PLN02555		480	limonoid glucosyltransferase	80.69
KOG1192		496	consensus UDP-glucuronosyl and UDP-glucosyl transf	80.3
PLN02207		468	UDP-glycosyltransferase	80.1

>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated	Back alignment and domain information

Probab=100.00  E-value=1.3e-34  Score=328.39  Aligned_cols=358  Identities=14%  Similarity=0.163  Sum_probs=265.3

Q ss_pred             CceEEEEcCCCCCChHHHHHHHHHHHHHHcCCeEEEEEcCC-CcchhhhhhcCceEEEcccc--------hhHHHHhhhc
Q 001646          144 KPQLALVFPDLLIDPQQLQMVTIAIALREIGYAIQVYSLED-GRAHEVWRNIGVPVAILQTG--------REKASFVNWL  214 (1038)
Q Consensus       144 ~prIaiV~~~L~iGGae~~v~~LAkaL~k~G~eV~V~t~~~-g~~~~~~e~~gI~v~~l~~~--------rkl~~lI~~~  214 (1038)
                      +|+|+.|++.+..||+++++.++++.|.+.||++.|++..+ ++........++.+..+...        .++.++++..
T Consensus         1 ~~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~   80 (374)
T TIGR03088         1 RPLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVSAFRKRIQRPDVAFYALHKQPGKDVAVYPQLYRLLRQL   80 (374)
T ss_pred             CceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCChhHHHHHhcCceEEEeCCCCCCChHHHHHHHHHHHHh
Confidence            68999999999999999999999999999999999998654 33334445556665554322        2355567778


Q ss_pred             CCcEEEEcCCchhHHHHHHHhCCCCCCCE-EEEEeCchhHHhHHHhhhhchhHHHHHHHH-HHHhcceEeccCCc-cccc
Q 001646          215 NYDGILVNSLEAKVVISNIMQEPFKSLPL-VWTIHEGTLATRARNYASSGQLELLNDWKK-VFNRATVVVFPDYV-LPMM  291 (1038)
Q Consensus       215 kpDIVhvhs~~~~~~la~La~~~~~gIPv-I~tiHg~~L~~~lek~~~~~~d~lIs~~~~-~~~~a~~vvfps~~-l~vi  291 (1038)
                      +||+||+|+...  ....++.. ..++|+ +++.|+............      ....+. ....++.++..+.. ...+
T Consensus        81 ~~Divh~~~~~~--~~~~~~~~-~~~~~~~i~~~h~~~~~~~~~~~~~------~~~~~~~~~~~~~~~i~vs~~~~~~~  151 (374)
T TIGR03088        81 RPDIVHTRNLAA--LEAQLPAA-LAGVPARIHGEHGRDVFDLDGSNWK------YRWLRRLYRPLIHHYVAVSRDLEDWL  151 (374)
T ss_pred             CCCEEEEcchhH--HHHHHHHH-hcCCCeEEEeecCcccccchhhHHH------HHHHHHHHHhcCCeEEEeCHHHHHHH
Confidence            999999998644  22223322 334553 556665322111000000      000111 12234444444433 1111


Q ss_pred             --cccCCCCCEEEcCCCCCCccccccccchhhHHHHHhhCCCCCCEEEEEEecccccccccccHHHHHHHHHHchhhccc
Q 001646          292 --YSAFDAGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSV  369 (1038)
Q Consensus       292 --yn~vd~~ki~VIPgsgVD~~~f~~~~~~~k~~lReklgi~~d~~vIL~VGsrl~~~KGiKgldlLLeAl~~L~~k~p~  369 (1038)
                        ..+++..++.+|++ |+|...+.+.... +...+......+++++|+++| ++.+.   ||++.+++|+..+.++.++
T Consensus       152 ~~~~~~~~~~~~vi~n-gvd~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~vG-rl~~~---Kg~~~li~a~~~l~~~~~~  225 (374)
T TIGR03088       152 RGPVKVPPAKIHQIYN-GVDTERFHPSRGD-RSPILPPDFFADESVVVGTVG-RLQAV---KDQPTLVRAFALLVRQLPE  225 (374)
T ss_pred             HHhcCCChhhEEEecc-CccccccCCCccc-hhhhhHhhcCCCCCeEEEEEe-cCCcc---cCHHHHHHHHHHHHHhCcc
Confidence              12345577888984 8887544332211 222233334456788999999 78887   9999999999999877653


Q ss_pred             CCCCCCCEEEEEEe-CCCCCchHHHHHHHHHHcCCCCceEEEccChhhHHHHHHhcCEEEEcccCCcCCcCHHHHHHHHc
Q 001646          370 ENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCF  448 (1038)
Q Consensus       370 ~~~~~~~vkLVIVG-G~~~e~Y~~~LeeLa~qLgL~d~~V~flG~~edV~~lLaaADIfVlPS~~EeqGFPlvLLEAMA~  448 (1038)
                         ..++++|+++| |+..    +.+++.++++++.+ .|.|+|..+++.++|++||++|+||..|  |||++++|||+|
T Consensus       226 ---~~~~~~l~i~G~g~~~----~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~adi~v~pS~~E--g~~~~~lEAma~  295 (374)
T TIGR03088       226 ---GAERLRLVIVGDGPAR----GACEQMVRAAGLAH-LVWLPGERDDVPALMQALDLFVLPSLAE--GISNTILEAMAS  295 (374)
T ss_pred             ---cccceEEEEecCCchH----HHHHHHHHHcCCcc-eEEEcCCcCCHHHHHHhcCEEEeccccc--cCchHHHHHHHc
Confidence               12349999999 7765    78889999999998 8999999999999999999999999988  799999999999


Q ss_pred             CCCEEEcCCcccccccccCccEEEEcCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHH
Q 001646          449 RKPIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSV-KNLMALETIEGYAMLLEN  527 (1038)
Q Consensus       449 GkPVIaTdvgGi~EiV~dG~nGlLv~~~D~eaLAeAI~~LLsDg~l~elr~~mg~~are~a-k~Fs~e~ia~~Y~~Lye~  527 (1038)
                      |+|||+|+.||.+|++.++.+|++++++|+++++++|..++++   ++.+..++.+|++.+ ++|+++.++++|.++|++
T Consensus       296 G~Pvv~s~~~g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~---~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~  372 (374)
T TIGR03088       296 GLPVIATAVGGNPELVQHGVTGALVPPGDAVALARALQPYVSD---PAARRAHGAAGRARAEQQFSINAMVAAYAGLYDQ  372 (374)
T ss_pred             CCCEEEcCCCCcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999   899999999999998 679999999999999987


Q ss_pred             hh
Q 001646          528 VL  529 (1038)
Q Consensus       528 vL  529 (1038)
                      ++
T Consensus       373 ~~  374 (374)
T TIGR03088       373 LL  374 (374)
T ss_pred             hC
Confidence            63

Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.

>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase	Back alignment and domain information

>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional	Back alignment and domain information

>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain	Back alignment and domain information

>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase	Back alignment and domain information

>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PRK10307 putative glycosyl transferase; Provisional	Back alignment and domain information

>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose	Back alignment and domain information

>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli	Back alignment and domain information

>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional	Back alignment and domain information

>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family	Back alignment and domain information

>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PRK00654 glgA glycogen synthase; Provisional	Back alignment and domain information

>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant	Back alignment and domain information

>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional	Back alignment and domain information

>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PLN02316 synthase/transferase	Back alignment and domain information

>PLN02939 transferase, transferring glycosyl groups	Back alignment and domain information

>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type	Back alignment and domain information

>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>TIGR02470 sucr_synth sucrose synthase	Back alignment and domain information

>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional	Back alignment and domain information

>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PRK14099 glycogen synthase; Provisional	Back alignment and domain information

>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds	Back alignment and domain information

>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known	Back alignment and domain information

>PLN00142 sucrose synthase	Back alignment and domain information

>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional	Back alignment and domain information

>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PRK10125 putative glycosyl transferase; Provisional	Back alignment and domain information

>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria	Back alignment and domain information

>PRK14098 glycogen synthase; Provisional	Back alignment and domain information

>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PLN02949 transferase, transferring glycosyl groups	Back alignment and domain information

>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PLN02846 digalactosyldiacylglycerol synthase	Back alignment and domain information

>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>TIGR02918 accessory Sec system glycosylation protein GtfA	Back alignment and domain information

>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated	Back alignment and domain information

>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]	Back alignment and domain information

>PLN02501 digalactosyldiacylglycerol synthase	Back alignment and domain information

>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding	Back alignment and domain information

>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional	Back alignment and domain information

>PHA01630 putative group 1 glycosyl transferase	Back alignment and domain information

>PLN02275 transferase, transferring glycosyl groups	Back alignment and domain information

>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis	Back alignment and domain information

>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed	Back alignment and domain information

>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	Back alignment and domain information

>PHA01633 putative glycosyl transferase group 1	Back alignment and domain information

>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor	Back alignment and domain information

>PRK13609 diacylglycerol glucosyltransferase; Provisional	Back alignment and domain information

>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]	Back alignment and domain information

>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis	Back alignment and domain information

>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]	Back alignment and domain information

>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds	Back alignment and domain information

>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK13608 diacylglycerol glucosyltransferase; Provisional	Back alignment and domain information

>PLN02605 monogalactosyldiacylglycerol synthase	Back alignment and domain information

>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional	Back alignment and domain information

>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional	Back alignment and domain information

>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds	Back alignment and domain information

>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed	Back alignment and domain information

>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase	Back alignment and domain information

>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]	Back alignment and domain information

>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase	Back alignment and domain information

>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc)	Back alignment and domain information

>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional	Back alignment and domain information

>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A	Back alignment and domain information

>TIGR00215 lpxB lipid-A-disaccharide synthase	Back alignment and domain information

>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional	Back alignment and domain information

>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1	Back alignment and domain information

>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed	Back alignment and domain information

>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1	Back alignment and domain information

>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3	Back alignment and domain information

>PRK10117 trehalose-6-phosphate synthase; Provisional	Back alignment and domain information

>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>TIGR02094 more_P_ylases alpha-glucan phosphorylases	Back alignment and domain information

>TIGR02919 accessory Sec system glycosyltransferase GtfB	Back alignment and domain information

>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>TIGR03492 conserved hypothetical protein	Back alignment and domain information

>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]	Back alignment and domain information

>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG	Back alignment and domain information

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A	Back alignment and domain information

>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin	Back alignment and domain information

>TIGR01426 MGT glycosyltransferase, MGT family	Back alignment and domain information

>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences	Back alignment and domain information

>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing	Back alignment and domain information

>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A	Back alignment and domain information

>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A	Back alignment and domain information

>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length	Back alignment and domain information

>TIGR00661 MJ1255 conserved hypothetical protein	Back alignment and domain information

>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1	Back alignment and domain information

>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like	Back alignment and domain information

>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed	Back alignment and domain information

>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional	Back alignment and domain information

>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5	Back alignment and domain information

>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]	Back alignment and domain information

>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>COG1817 Uncharacterized protein conserved in archaea [Function unknown]	Back alignment and domain information

>PRK02797 4-alpha-L-fucosyltransferase; Provisional	Back alignment and domain information

>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long)	Back alignment and domain information

>PRK14089 ipid-A-disaccharide synthase; Provisional	Back alignment and domain information

>COG4671 Predicted glycosyl transferase [General function prediction only]	Back alignment and domain information

>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2	Back alignment and domain information

>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria	Back alignment and domain information

>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases	Back alignment and domain information

>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E	Back alignment and domain information

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]	Back alignment and domain information

>PRK10017 colanic acid biosynthesis protein; Provisional	Back alignment and domain information

>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins	Back alignment and domain information

>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS)	Back alignment and domain information

>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]	Back alignment and domain information

>PLN02670 transferase, transferring glycosyl groups	Back alignment and domain information

>PLN02448 UDP-glycosyltransferase family protein	Back alignment and domain information

>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional	Back alignment and domain information

>PLN02210 UDP-glucosyl transferase	Back alignment and domain information

>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule	Back alignment and domain information

>PLN02562 UDP-glycosyltransferase	Back alignment and domain information

>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein	Back alignment and domain information

>PLN03004 UDP-glycosyltransferase	Back alignment and domain information

>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein	Back alignment and domain information

>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II	Back alignment and domain information

>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>PLN03007 UDP-glucosyltransferase family protein	Back alignment and domain information

>PLN02208 glycosyltransferase family protein	Back alignment and domain information

>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis	Back alignment and domain information

>PRK14986 glycogen phosphorylase; Provisional	Back alignment and domain information

>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function	Back alignment and domain information

>PRK14985 maltodextrin phosphorylase; Provisional	Back alignment and domain information

>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT	Back alignment and domain information

>PLN02167 UDP-glycosyltransferase family protein	Back alignment and domain information

>PLN02152 indole-3-acetate beta-glucosyltransferase	Back alignment and domain information

>PLN02173 UDP-glucosyl transferase family protein	Back alignment and domain information

>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional	Back alignment and domain information

>PLN02764 glycosyltransferase family protein	Back alignment and domain information

>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases	Back alignment and domain information

>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases	Back alignment and domain information

>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>PLN02554 UDP-glycosyltransferase family protein	Back alignment and domain information

>PF15024 Glyco_transf_18: Glycosyltransferase family 18	Back alignment and domain information

>PLN02555 limonoid glucosyltransferase	Back alignment and domain information

>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]	Back alignment and domain information

>PLN02207 UDP-glycosyltransferase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1038
2jjm_A		394	Glycosyl transferase, group 1 family protein; anth	4e-10
2iw1_A		374	Lipopolysaccharide core biosynthesis protein RFAG;	5e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
2x6q_A		416	Trehalose-synthase TRET; biosynthetic protein; 2.2	3e-08
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	2e-04

>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A* Length = 394	Back alignment and structure

 Score = 61.9 bits (151), Expect = 4e-10
 Identities = 44/304 (14%), Positives = 104/304 (34%), Gaps = 54/304 (17%)

Query: 239 KSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRATVVVFP-DYVLPMMYSAF-D 296
           + + +V T+H GT  T   +  S   L      +    ++ VV      ++   +     
Sbjct: 124 ERIKIVTTLH-GTDITVLGSDPSLNNLI-----RFGIEQSDVVTAVSHSLINETHELVKP 177

Query: 297 AGNYYVIP-GSPAKAWEADTNMDLYNDTVRVKMGFKPDDLVIAIVGTQFMYR-GLWLEHA 354
             +   +      + +            ++ + G    + ++  +   F           
Sbjct: 178 NKDIQTVYNFIDERVYFKRDM-----TQLKKEYGISESEKILIHIS-NFRKVKR----VQ 227

Query: 355 LILRALLPLFSEVSVENESNSPIKVMIL-SGDSTSNYSVVIEAIAHNLHYP-----LGVV 408
            +++A    F+++     +    K++++  G         I  +  NLH       LG  
Sbjct: 228 DVVQA----FAKIV----TEVDAKLLLVGDGPEFCT----ILQLVKNLHIEDRVLFLGKQ 275

Query: 409 KHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRKPIIAPDLSNIRKYVDDRV 468
                  +V  +L  +D+++  S  E  +F  +L++A+    P I   +  I + +    
Sbjct: 276 D------NVAELLAMSDLMLLLSEKE--SFGLVLLEAMACGVPCIGTRVGGIPEVIQHGD 327

Query: 469 NGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVK-----NLMALETIEGYAM 523
            GYL    +   +    +Q++ + +     RN+    R SV        +  +    Y  
Sbjct: 328 TGYLCEVGDTTGVADQAIQLLKDEE---LHRNMGERARESVYEQFRSEKIVSQYETIYYD 384

Query: 524 LLEN 527
           +L +
Sbjct: 385 VLRD 388

PyMOL of 2jjm

>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* Length = 374	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A* Length = 416	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1038
d2bisa1		437	c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyro	3e-05
d2iw1a1		370	c.87.1.8 (A:2-371) Lipopolysaccharide core biosynt	4e-05
d1rzua_		477	c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacte	0.004

>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Length = 437	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Pyrococcus abyssi [TaxId: 29292]

 Score = 45.2 bits (105), Expect = 3e-05
 Identities = 38/320 (11%), Positives = 96/320 (30%), Gaps = 25/320 (7%)

Query: 220 LVNSLEAKVVISNIMQEPFKSLPLVWTIHEGTLATRARNYASSGQLELLNDWKKVFNRAT 279
           +V+  +   V +  + + +  +P V+TIH    +     Y     L  L  +  +    T
Sbjct: 123 VVHFHDWHTVFAGALIKKYFKIPAVFTIHRLNKSKLPAFYFHEAGLSELAPYPDIDPEHT 182

Query: 280 VVVFPDYVLPMMYSAFD---------AGNYYVIPGSPAKAWEADTNMDLYNDTVRVKMGF 330
                D V  +                G    +      ++  ++ +    D  +  +  
Sbjct: 183 GGYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFNGIDCSFWNESYLTGSRDERKKSLLS 242

Query: 331 KPDDLVIAIVGTQFMYRGLWLEHALILRALLPLFSEVSVENESNSPIKVMILSGDSTSNY 390
           K              +        ++L+        + + +      ++  +        
Sbjct: 243 KFGMDEGVTFMFIGRFDRGQKGVDVLLK-------AIEILSSKKEFQEMRFIIIGKGDPE 295

Query: 391 SVVIEAIAHNLHYPLGVVKHMAAEGDVDSVLNTADVVIYGSFLEEQTFPEILVKALCFRK 450
                      H  + V+  M +   V  +  + D VI  S+   + F  + ++A+C   
Sbjct: 296 LEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSY--FEPFGLVALEAMCLGA 353

Query: 451 PIIAPDLSNIRKYVDDRVNGYLFPKENIKALTHIILQVITNGKISPFARNIASIGRRSVK 510
             IA  +  +R  + +   G L    +   L + IL+ +   +            ++   
Sbjct: 354 IPIASAVGGLRDIITNE-TGILVKAGDPGELANAILKALELSR--SDLSKFRENCKKRAM 410

Query: 511 NL----MALETIEGYAMLLE 526
           +      A   ++ Y   ++
Sbjct: 411 SFSWEKSAERYVKAYTGSID 430

PyMOL of d2bisa1

>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} Length = 370	Back information, alignment and structure

>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Length = 477	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1038
d1rzua_		477	Glycogen synthase 1, GlgA {Agrobacterium tumefacie	100.0
d2bisa1		437	Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI	100.0
d2iw1a1		370	Lipopolysaccharide core biosynthesis protein RfaG	100.0
d1uqta_		456	Trehalose-6-phosphate synthase, OtsA {Escherichia	99.93
d2bfwa1		196	Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI	99.91
d2f9fa1		166	First mannosyl transferase WbaZ {Archaeoglobus ful	99.84
d1f0ka_		351	Peptidoglycan biosynthesis glycosyltransferase Mur	99.47
d1pn3a_		391	TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi	99.22
d1rrva_		401	TDP-vancosaminyltransferase GftD {Amycolatopsis or	99.11
d1iira_		401	UDP-glucosyltransferase GtfB {Amycolatopsis orient	99.06
d1v4va_		373	UDP-N-acetylglucosamine 2-epimerase {Thermus therm	98.79
d1o6ca_		377	UDP-N-acetylglucosamine 2-epimerase {Bacillus subt	98.53
d1f6da_		376	UDP-N-acetylglucosamine 2-epimerase {Escherichia c	98.36
d2acva1		461	Triterpene UDP-glucosyl transferase UGT71G1 {Medic	97.82
d1l5wa_		796	Maltodextrin phosphorylase (MALP) {Escherichia col	97.72
d2c1xa1		450	UDP glucose:flavonoid 3-o-glucosyltransferase {Gra	97.59
d2gj4a1		824	Glycogen phosphorylase {Rabbit (Oryctolagus cunicu	97.49
d2pq6a1		473	(Iso)flavonoid glycosyltransferase {Medicago trunc	96.08
d1pswa_		348	ADP-heptose LPS heptosyltransferase II {Escherichi	95.59
d1ygpa_		876	Glycogen phosphorylase {Baker's yeast (Saccharomyc	93.59
d2vcha1		471	Hydroquinone glucosyltransferase {Thale cress (Ara	91.01

>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=8.2e-37  Score=279.56  Aligned_cols=360  Identities=14%  Similarity=0.080  Sum_probs=233.0

Q ss_pred             CEEEEECCCCC----CCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHH----------------------HHHCCCEE
Q ss_conf             64999928999----99499999999999998399699997489852122----------------------44059108
Q 001646          145 PQLALVFPDLL----IDPQQLQMVTIAIALREIGYAIQVYSLEDGRAHEV----------------------WRNIGVPV  198 (1038)
Q Consensus       145 prIalV~~~L~----iGGae~~i~~LAkaL~k~G~eV~Vit~~~g~~~~~----------------------~e~~gI~v  198 (1038)
                      +||++|...+.    .||...++..|+++|+++||+|+|+++..+.....                      ....++++
T Consensus         1 M~i~~v~~e~~P~~~~GGl~~vv~~La~~L~~~Gh~V~Vi~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   80 (477)
T d1rzua_           1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEFTDLLGEKADLLEVQHERLDL   80 (477)
T ss_dssp             CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHHCCSCEEEEEESCSSSCCEEEEEEEETTEEE
T ss_pred             CEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCCEEEEEEECCCCCEEEEEEEEECCEEE
T ss_conf             98999977220633267689999999999997699699996698534465256658999714678547899999899159


Q ss_pred             EECCCC-----------------------------HHHHHH----HHHCCCCEEEECCCCHHHHHHHHHHCCCCCCCEEE
Q ss_conf             971552-----------------------------368987----63219759999477516899998727899997999
Q 001646          199 AILQTG-----------------------------REKASF----VNWLNYDGILVNSLEAKVVISNIMQEPFKSLPLVW  245 (1038)
Q Consensus       199 ~~l~~~-----------------------------rkl~~l----I~~~kpDIVhvhs~~~~~~ia~La~~~~~gIPvI~  245 (1038)
                      +.+...                             .....+    +...+||+||+|.+........+......++|+|+
T Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDIvH~h~~~~~l~~~~~~~~~~~~ip~V~  160 (477)
T d1rzua_          81 LILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQAAMTPVYMRYAETPEIPSLL  160 (477)
T ss_dssp             EEEECHHHHCSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEHHHHTTHHHHHHHSSSCCCCEEE
T ss_pred             EEECCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             99558243046787355766656652188999999887766530256888887993360677889999985478988899


Q ss_pred             EEECCHHHHH-----HHHH-------HHHC--HHHHHHHHHHHHHHCCEEECCCCC----CCCC--------CCCCCCCC
Q ss_conf             9909014776-----9986-------4103--037887899998752357615886----1000--------13579998
Q 001646          246 TIHEGTLATR-----ARNY-------ASSG--QLELLNDWKKVFNRATVVVFPDYV----LPMM--------YSAFDAGN  299 (1038)
Q Consensus       246 tiHg~~L~~~-----lek~-------~~~~--~d~iIs~~~~~~~~a~~vvfps~~----l~vi--------yn~id~~k  299 (1038)
                      |+|+......     +...       ....  ....+...+.....++.+...+..    ....        .......+
T Consensus       161 t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (477)
T d1rzua_         161 TIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAEFGMGLEGVIGSRAHV  240 (477)
T ss_dssp             EESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCHHHHHHTTSHHHHTTCHHHHHTTGGG
T ss_pred             EEECCCCCCCCCHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHCCCC
T ss_conf             98324423467888998862114440654434320568999887764442131199999999875475366566651564


Q ss_pred             EEECCCCCCCCCCCCCCCC----------------HHHHHHHHHHCCCC-CCEEEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf             7980999988654343563----------------01479988609999-997999994013422343449999999997
Q 001646          300 YYVIPGSPAKAWEADTNMD----------------LYNDTVRVKMGFKP-DDLVIAIVGTQFMYRGLWLEHALILRALLP  362 (1038)
Q Consensus       300 i~VIPgsgVD~~~f~~~~~----------------~~k~~lReklgi~~-d~~vIL~VGsrl~~~KGiKgldlLLeAl~~  362 (1038)
                      +.+|++ |++...+.+...                ..+..++...+.++ +.++|+++| ++.++   ||+++|++|+..
T Consensus       241 ~~vi~n-gv~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vg-rl~~~---KG~~~Ll~a~~~  315 (477)
T d1rzua_         241 LHGIVN-GIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVIS-RLTWQ---KGIDLMAEAVDE  315 (477)
T ss_dssp             EEECCC-CBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTCCCSSSCEEEEES-CBSTT---TTHHHHHTTHHH
T ss_pred             EEEEEC-CCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE-EEEEC---CCCHHHHHHHHH
T ss_conf             799978-9340120566453333331045677766638998874144667863899985-00215---883799999998


Q ss_pred             CHHHCCCCCCCCCCEEEEEEE-CCCCCCHHHHHHHHHHHCCCCCCEEEECCCH--HHHHHHHHHCCEEEECCCCCCCCCC
Q ss_conf             333015577899997999991-8999832999999999839999509993570--0099999764777982567758867
Q 001646          363 LFSEVSVENESNSPIKVMILS-GDSTSNYSVVIEAIAHNLHYPLGVVKHMAAE--GDVDSVLNTADVVIYGSFLEEQTFP  439 (1038)
Q Consensus       363 L~~k~p~~~~~~~~vkLVIVG-G~~~e~Y~~~LkeLa~qLgL~d~~V~flG~~--eeV~~lLaaADIfVlPS~~EeqGFP  439 (1038)
                      +.+..         .+++++| |+..  +...++++..  ++.+ +|.+.+..  +++..+|++||++|+||.+|  +||
T Consensus       316 ~~~~~---------~~l~~~G~G~~~--~~~~~~~~~~--~~~~-~v~~~~~~~~~~~~~~~~~aD~~v~PS~~E--~fg  379 (477)
T d1rzua_         316 IVSLG---------GRLVVLGAGDVA--LEGALLAAAS--RHHG-RVGVAIGYNEPLSHLMQAGCDAIIIPSRFE--PCG  379 (477)
T ss_dssp             HHHTT---------CEEEEEECBCHH--HHHHHHHHHH--HTTT-TEEEEESCCHHHHHHHHHHCSEEEECCSCC--SSC
T ss_pred             HHHHC---------CEEEEEECCCCH--HHHHHHHHHH--HCCC-EEEEECCCCHHHHHHHHHHCCCCCCCCCCC--CCC
T ss_conf             78659---------839999367745--7789999876--3587-278971547057999998385134886535--788


Q ss_pred             HHHHHHHHCCCCEEECCCCCCCCCCCCCC---------CEEEECCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHH
Q ss_conf             89999999099899749865211223485---------1899928999999999999998---39991899999999999
Q 001646          440 EILVKALCFRKPIIAPDLSNIRKYVDDRV---------NGYLFPKENIKALTHIILQVIT---NGKISPFARNIASIGRR  507 (1038)
Q Consensus       440 lvLLEAMA~GlPVIaTdvgGi~EiV~dG~---------nGlLv~~~DveaLAeAI~~LLs---Dg~l~elr~~lg~~are  507 (1038)
                      ++++|||+||+|||+|+.||++|+|.|+.         +|+++++.|+++|+++|.++++   |   ++.+++|+.++. 
T Consensus       380 lv~lEAma~G~PvVas~~GG~~E~v~d~~~~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~---~~~~~~~~~~a~-  455 (477)
T d1rzua_         380 LTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHD---PKLWTQMQKLGM-  455 (477)
T ss_dssp             SHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHHHHTC---HHHHHHHHHHHH-
T ss_pred             HHHHHHHHCCCCEEECCCCCCCCEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCC---HHHHHHHHHHHH-
T ss_conf             8999999839989990799974055248755334678744896999999999999999860079---999999999999-


Q ss_pred             HHHHHCHHHHHHHHHHHHHHHHC
Q ss_conf             99840899999999999999635
Q 001646          508 SVKNLMALETIEGYAMLLENVLK  530 (1038)
Q Consensus       508 ~ak~Fs~e~ia~~Y~~Lle~iLk  530 (1038)
                       .++|+|+.++++|.++|++++.
T Consensus       456 -~~~fsw~~~a~~~~~lY~~ll~  477 (477)
T d1rzua_         456 -KSDVSWEKSAGLYAALYSQLIS  477 (477)
T ss_dssp             -TCCCBHHHHHHHHHHHHHHHTC
T ss_pred             -HHHCCHHHHHHHHHHHHHHHHC
T ss_conf             -8518999999999999999849

PyMOL of d1rzua_

>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}	Back information, alignment and structure

>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}	Back information, alignment and structure

>d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]}	Back information, alignment and structure

>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]}	Back information, alignment and structure

>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]}	Back information, alignment and structure

>d1v4va_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1o6ca_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1f6da_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase UGT71G1 {Medicago truncatula [TaxId: 3880]}	Back information, alignment and structure

>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid 3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId: 29760]}	Back information, alignment and structure

>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure

>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase {Medicago truncatula [TaxId: 3880]}	Back information, alignment and structure

>d1pswa_ c.87.1.7 (A:) ADP-heptose LPS heptosyltransferase II {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure