Citrus Sinensis ID: 001648

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------104
MEEKRREAGAQPAATSSAAAGAESAASEPASSRRRAGAHKRKASALSATNASSTPSKRMTREKNLVAHTPIYNHNGPLTRARQGPTTLAAAAAFGGAPGSAGGKLEAARDDSTFEAIEELNKASEEWAALEAKIEADFEAIRSRDSNVHVVPTHCGWFSWTKIHPLEEQALPAFFNGKSQDRTPDIYMEIRNWIMKKFHSNPITQIELKDLSELEVGSLDARQEVMEFLDYWGLINFHPFPHVESSVANSDGDRMTDADSDAAAKKGSLLEKLYRFEEIKAGPPVAPMPSITFPAVPSGLFPESAIAEELAKLEGPAVEYHCNSCSADCSRKRYHCQKQADFDLCTDCFNNGKFGSDMSSSDFILMVPGEAAGVSGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDMFLDCDDDVDGNLKETTDDAPTNGDTSASKDVAEASESKTGAVEGQTQTSPMETSKPEDASELKICEDTSKPKDESDVKVDEQMLKSEDTSEGKVGQETGENIALKALREAFEAVGYVPTHETPQSFAEVGNPVMALAAFLTLLGGPDLTTASARSSLKSISGNSPAMQLAAKHCFILEDPPGDKKEVAHSESIVAEMADRDIQKDETLEDINVKECNSASVLDERDLSNDHGDKKIEDSVPEEKRHAASLNEKPSEKLNGATGPANQDTPEKDEPGDLNELSNPKSPKDNQPSIVEESNDLPSKVLQSSQKESGEGSSGEPAPPVDVEKDNSLLSDSLPSGKNEPDQRVLSNSVAEPSPPSKLTNDVDMVSDPQPLENNEPEKQITSSTEKPSESTEAPKDVEMVSTSLPSEINEPQQTDSITGTETARVEDQNRDGQDEKHDSKETKNDQYIDKLKHAAVTALSAAAVKAKLLACQEEDQIRQLATSLIEKQLQKLEAKLAFFNEMDNVTMRVREQLERSRQRLYQERALIIQARLGPSRVMQPSVPANRNPMTFANSVARPPMSMTSPRPPISRPMVPQSSTPSNPFGSTTTAGSSIRPSSQDNLSSVGMK
ccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccEEccccccccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccEEEHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccEEccccccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHcccccccHHHHHHcccccccccccccccccccHHHHHHccccccccccHHHHHHHHHcccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccHHHccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcHHcHHHHHHHHHHHHcccEEEEccccHccccccHHHHHHHcHHHHccccccccHHHHHHHHHHHHHHcccccHHHEEHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccEEEcccccccccEEEEcccccccccccHHHHHcccccccccccccEEcccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHcEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
MEEKRreagaqpaatssaaagaesaasepassrrRAGAHKrkasalsatnasstpskrmtreknlvahtpiynhngpltrarqgpTTLAAAAAfggapgsaggkleaarddsTFEAIEELNKASEEWAALEAKIEADFEAIrsrdsnvhvvpthcgwfswtkihpleeqalpaffngksqdrtpDIYMEIRNWIMKkfhsnpitqielkdlselevgSLDARQEVMEFLDYwglinfhpfphvessvansdgdrmtdadsDAAAKKGSLLEKLYRfeeikagppvapmpsitfpavpsglfpesAIAEELAKlegpaveyhcnscsadcsrkryhcqkqadfdlctdcfnngkfgsdmsssdfilmvpgeaagvsggkwtDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQmpiedmfldcdddvdgnlkettddaptngdtsasKDVAeasesktgavegqtqtspmetskpedaselkicedtskpkdesdvkvdeqmlksedtsegkvgqeTGENIALKALREAFEavgyvpthetpqsfaevgNPVMALAAFLTLlggpdlttASARSSlksisgnspaMQLAAKHCfiledppgdkkevahSESIVAEMadrdiqkdetledinvkecnsasvlderdlsndhgdkkiedsvpeekrhaaslnekpseklngatgpanqdtpekdepgdlnelsnpkspkdnqpsiveesndlpskvlqssqkesgegssgepappvdvekdnsllsdslpsgknepdqrvlsnsvaepsppskltndvdmvsdpqplennepekqitsstekpsesteapkdvemvstslpseinepqqtdsitgtetarvedqnrdgqdekhdsketkndqYIDKLKHAAVTALSAAAVKAKLLACQEEDQIRQLATSLIEKQLQKLEAKLAFFNEMDNVTMRVREQLERSRQRLYQERALIIQArlgpsrvmqpsvpanrnpmtfansvarppmsmtsprppisrpmvpqsstpsnpfgstttagssirpssqdnlssvgmk
meekrreagaqpaatssaaagaesaasepassrrragahkrkasalsatnasstpskrmtrEKNLVAhtpiynhngplTRARQGPTTLAAAAAFGGAPGSAGGKLEAARDDSTFEAIEELNKASEEWAALEAKIEADFEAIRSRDSNVHVVPTHCGWFSWTKIHPLEEQALPAffngksqdrtPDIYMEIRNWIMKKFHSNPITQIELKDLSELEVGSLDARQEVMEFLDYWGLINFHPFPHVESSVANSDGDRMTDADSDAAAKKGSLLEKLYRFEEIKAGPPVAPMPSITFPAVPSGLFPESAIAEELAKLEGPAVEYHCNSCSADCSRKRYHCQKQADFDLCTDCFNNGKFGSDMSSSDFILMVPGEAAGVSGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDMFLDCDDDVDGNLKettddaptngdtsaskdvaeasesktgavegqtqtspmetskpedaselkicedtskpkdesdvkvdeqmlksedtsegkvgqetGENIALKALREAFEAVGYVPTHETPQSFAEVGNPVMALAAFLTLLGGPDLTTASARSSLKSISGNSPAMQLAAKHCFILEDPPGDKKEVAHSESIVAemadrdiqkdetledinvkecnsasvlderdlsndhgdkkiedsvpeekRHAAslnekpseklngatgpanqdtpekdepgdlnelsnpkspkdnqpSIVEESNDLPSKVLQSSqkesgegssgepappvdVEKDNSLLSDSlpsgknepdqrvlsnsvaepsppskltndvDMVSDPQplennepekqitsstekpsesteapkDVEMVStslpseinepqqtdsitgtetarvedqnrdgqdekhdsketkndqyIDKLKHAAVTALSAAAVKAKLLACQEEDQIRQLATSLIEKQLQKLEAKLAFFNEMDNVTMRVREQLERSRQRLYQERALIIqarlgpsrvmqpsvpanrnpmtfansvarppmsMTSPRPPISRPMVPQSSTPSNPFGstttagssirpssqdnlssvgmk
MEEKRReagaqpaatssaaagaesaasepassrrragaHKRKasalsatnasstpsKRMTREKNLVAHTPIYNHNGPLTRARQGPTTLaaaaafggapgsaggKLEAARDDSTFEAIEELNKASEEWAALEAKIEADFEAIRSRDSNVHVVPTHCGWFSWTKIHPLEEQALPAFFNGKSQDRTPDIYMEIRNWIMKKFHSNPITQIELKDLSELEVGSLDARQEVMEFLDYWGLINFHPFPHVESSVANSDGDRMTdadsdaaaKKGSLLEKLYRFEEIKAGPPVAPMPSITFPAVPSGLFPESAIAEELAKLEGPAVEYHCNSCSADCSRKRYHCQKQADFDLCTDCFNNGKFGSDMSSSDFILMVPGEAAGVSGGKWTDQetllllealelYKENWNEIAEHVATKTKAQCILHFVQMPIEDMFLDCDDDVDGNLKETTDDAPTNGDTSASKDVAEASESKTGAVEGQTQTSPMETSKPEDASELKICEDTSKPKDESDVKVDEQMLKSEDTSEGKVGQETGENIALKALREAFEAVGYVPTHETPQSFAEVGNPVMALAAFLTLLGGPDLTTASARSSLKSISGNSPAMQLAAKHCFILEDPPGDKKEVAHSESIVAEMADRDIQKDETLEDINVKECNSASVLDERDLSNDHGDKKIEDSVPEEKRHAASLNEKPSEKLNGATGPANQDTPEKDEPGDLNELSNPKSPKDNQPSIVEESNDLPSKVLQSSQKesgegssgePAPPVDVEKDNSLLSDSLPSGKNEPDQRVLSNSVAEPSPPSKLTNDVDMVSDPQPLENNEPEKQItsstekpsesteAPKDVEMVSTSLPSEINEPQQTDSITGTETARVEDQNRDGQDEKHDSKETKNDQYIDKlkhaavtalsaaavkakllaCQEEDQIRQLATSLIEKQLQKLEAKLAFFNEMDNVTMRVREQLERSRQRLYQERALIIQARLGPSRVMQPSVPANRNPMTFANSVArppmsmtsprppisrpmVPQSSTPSNPFGSTTTAGSSIRPSSQDNLSSVGMK
*****************************************************************************************************************************EWAALEAKIEADFEAIRSRDSNVHVVPTHCGWFSWTKIHPLEEQALPAFFNGKSQDRTPDIYMEIRNWIMKKFHSNPITQIELKDLSELEVGSLDARQEVMEFLDYWGLINFHPFPHV***************************EKLYRFEEIK*********SITFPAVPSGLFPESAIAEELAKLEGPAVEYHCNSCSADCSRKRYHCQKQADFDLCTDCFNNGKFGSDMSSSDFILMVPGEAAGVSGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDMFLDCDDDV*********************************************************************************************IALKALREAFEAVGYVPTHETPQSFAEVGNPVMALAAFLTLLGGPDL*********************AAKHCFIL**********************************************************************************************************************************************************************************************************************************************************************************YIDKLKHAAVTALSAAAVKAKLLACQEEDQIRQLATSLIEKQLQKLEAKLAFFNEMDNVTMRVR********RLYQERALIIQA******************************************************************************
***************************************************************************************************************************************************VHVVPTHCGWFSWTKIHPLEEQALPAFFNGKSQDRTPDIYMEIRNWIMKKFHSNPITQIELKDLSELEVGSLDARQEVMEFLDYWGLINFH*******************************************************************************VEYHCNSCSADCSRKRYHCQKQADFDLCTDCFNN***************************WTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDMFLD*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************QIRQLATSLIEKQLQKLEAKLAFFNEMDNVTMRVREQLERSRQRLYQER************************************************************************************
************************************************************REKNLVAHTPIYNHNGPLTRARQGPTTLAAAAAFGGAPGSAGGKLEAARDDSTFEAIEELNKASEEWAALEAKIEADFEAIRSRDSNVHVVPTHCGWFSWTKIHPLEEQALPAFFNGKSQDRTPDIYMEIRNWIMKKFHSNPITQIELKDLSELEVGSLDARQEVMEFLDYWGLINFHPFPHVESS****************AAKKGSLLEKLYRFEEIKAGPPVAPMPSITFPAVPSGLFPESAIAEELAKLEGPAVEYHCNSCSADCSRKRYHCQKQADFDLCTDCFNNGKFGSDMSSSDFILMVPGEAAGVSGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDMFLDCDDDVDGNLKETTD********************************************LKICEDTS***********EQMLK**********QETGENIALKALREAFEAVGYVPTHETPQSFAEVGNPVMALAAFLTLLGGPDLTTASARSSLKSISGNSPAMQLAAKHCFILEDPPGDKKEVAHSESIVAEMADRDIQKDETLEDINVKECNSASVLDERDLSNDHGDKKIE*************NEKPSEKLNGATGPANQDTPEKDEPGDLNELS************VEESNDL***********************VDVEKDNSLLSDSLP***********************LTNDVDMVSDPQPLE***************************VSTSLPSEINEPQQTDSITGT**********************KNDQYIDKLKHAAVTALSAAAVKAKLLACQEEDQIRQLATSLIEKQLQKLEAKLAFFNEMDNVTMRVREQLERSRQRLYQERALIIQARLGPSRVMQPSVPANRNPMTFANSVARPPMSMTSPRPPI***************************************
*************************************************************************************************************************************IEADFEAIRSRDSNVHVVPTHCGWFSWTKIHPLEEQALPAFFNGKSQDRTPDIYMEIRNWIMKKFHSNPITQIELKDLSELEVGSLDARQEVMEFLDYWGLINFHPFPHVESSVANSDGDRMTDADSDAAAKK*S*********************************PESAIA******EGPAVEYHCNSCSADCSRKRYHCQKQADFDLCTDCFNNGKFGSDMSSSDFILMVP********GKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDMFLDCDDDVDGNLKETTDDAPTNGDTSASKDVAEASESK************MET***ED****************************************GENIALKALREAFEAVGYVPTHETPQSFAEVGNPVMALAAFLTLLGGPDLTTASARSSLKSISGNSPAMQLAAKHCFILEDPPG***************************************************************************************************************************************************************************************************************************************************************************DQYIDKLKHAAVTALSAAAVKAKLLACQEEDQIRQLATSLIEKQLQKLEAKLAFFNEMDNVTMRVREQLERSRQRLYQERALIIQARLGP*******V*ANRNP****NSVARPPM**TSPRPP***P*VPQSSTPS***************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MEEKRREAGAQPAATSSAAAGAESAASEPASSRRRAGAHKRKASALSATNASSTPSKRMTREKNLVAHTPIYNHNGPLTRARQGPTTLAAAAAFGGAPGSAGGKLEAARDDSTFEAIEELNKASEEWAALEAKIEADFEAIRSRDSNVHVVPTHCGWFSWTKIHPLEEQALPAFFNGKSQDRTPDIYMEIRNWIMKKFHSNPITQIELKDLSELEVGSLDARQEVMEFLDYWGLINFHPFPHVESSVANSDGDRMTDADSDAAAKKGSLLEKLYRFEEIKAGPPVAPMPSITFPAVPSGLFPESAIAEELAKLEGPAVEYHCNSCSADCSRKRYHCQKQADFDLCTDCFNNGKFGSDMSSSDFILMVPGEAAGVSGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDMFLDCDDDVDGNLKETTDDAPTNGDTSASKDVAEASESKTGAVEGQTQTSPMETSKPEDASELKICEDTSKPKDESDVKVDEQMLKSEDTSEGKVGQETGENIALKALREAFEAVGYVPTHETPQSFAEVGNPVMALAAFLTLLGGPDLTTASARSSLKSISGNSPAMQLAAKHCFILEDPPGDKKEVAHSESIVAEMADRDIQKDETLEDINVKECNSASVLDERDLSNDHGDKKIEDSVPEEKRHAASLNEKPSEKLNGATGPANQDTPEKDEPGDLNELSNPKSPKDNQPSIVEESNDLPSKVLQSSQKESGEGSSGEPAPPVDVEKDNSLLSDSLPSGKNEPDQRVLSNSVAEPSPPSKLTNDVDMVSDPQPLENNEPEKQITSSTEKPSESTEAPKDVEMVSTSLPSEINEPQQTDSITGTETARVEDQNRDGQDEKHDSKETKNDQYIDKLKHAAVTALSAAAVKAKLLACQEEDQIRQLATSLIEKQLQKLEAKLAFFNEMDNVTMRVREQLERSRQRLYQERALIIQARLGPSRVMQPSVPANRNPMTFANSVARPPMSMTSPRPPISRPMVPQSSTPSNPFGSTTTAGSSIRPSSQDNLSSVGMK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1038 2.2.26 [Sep-21-2011]
Q8VY05985 SWI/SNF complex subunit S yes no 0.924 0.974 0.498 0.0
Q9XI07807 SWI/SNF complex subunit S no no 0.282 0.363 0.369 8e-51
O14470503 SWI/SNF and RSC complexes yes no 0.251 0.518 0.329 3e-35
P43609557 Chromatin structure-remod yes no 0.273 0.509 0.294 3e-33
Q84JG2469 SWI/SNF complex subunit S no no 0.229 0.507 0.297 1e-31
P974961104 SWI/SNF complex subunit S yes no 0.226 0.212 0.313 8e-25
Q929221105 SWI/SNF complex subunit S yes no 0.226 0.212 0.313 9e-25
Q6PDG51213 SWI/SNF complex subunit S no no 0.211 0.181 0.298 2e-24
Q8W475512 SWI/SNF complex subunit S no no 0.251 0.509 0.288 2e-24
O13788527 SWI/SNF and RSC complexes no no 0.274 0.540 0.255 3e-24
>sp|Q8VY05|SWI3D_ARATH SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana GN=SWI3D PE=1 SV=3 Back     alignment and function desciption
 Score =  789 bits (2038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/1060 (49%), Positives = 655/1060 (61%), Gaps = 100/1060 (9%)

Query: 1    MEEKRREAGAQPAATSSAAAGAESAASEPASS-RRRAGAHKRKASALSATNA-SSTPSKR 58
            MEEKRR++    A    A +  +S ASEP  + RRR G  KRKA+AL  +N  SS PSKR
Sbjct: 1    MEEKRRDSAGTLAF---AGSSGDSPASEPMPAPRRRGGGLKRKANALGGSNFFSSAPSKR 57

Query: 59   M-TREKNLVA-HTPIYNHNGPLTRARQGPTTLAAAA------AFGGAPGSAGGKLEAARD 110
            M TREK ++A  +P+  HNGPLTRARQ P+ + +AA          A G+ G K +    
Sbjct: 58   MLTREKAMLASFSPV--HNGPLTRARQAPSIMPSAADGVKSEVLNVAVGADGEKPKEE-- 113

Query: 111  DSTFEAIEELNKASEEWAALEAKIEADFEAIRSRDSNVHVVPTHCGWFSWTKIHPLEEQA 170
                   EE NKA  EW ALEAKIEADFEAIRSRDSNVHVVP HCGWFSW KIHPLEE++
Sbjct: 114  -------EERNKAIREWEALEAKIEADFEAIRSRDSNVHVVPNHCGWFSWEKIHPLEERS 166

Query: 171  LPAFFNGKSQDRTPDIYMEIRNWIMKKFHSNPITQIELKDLSELEVGSLDARQEVMEFLD 230
            LP+FFNGK + RT ++Y EIRNWIM KFHSNP  QIELKDL+ELEVG  +A+QEVMEFLD
Sbjct: 167  LPSFFNGKLEGRTSEVYREIRNWIMGKFHSNPNIQIELKDLTELEVGDSEAKQEVMEFLD 226

Query: 231  YWGLINFHPFPHVESSVANSDGDRMTDADSDAAAKKGSLLEKLYRFEEIKAGPPVAPMPS 290
            YWGLINFHPFP  ++    SD D + D        K SLL  LYRF+  +A PP+   P 
Sbjct: 227  YWGLINFHPFPPTDTGSTASDHDDLGD--------KESLLNSLYRFQVDEACPPLVHKPR 278

Query: 291  ITFPAVPSGLFPESAIAEELAKLEGPAVEYHCNSCSADCSRKRYHCQKQADFDLCTDCFN 350
             T  A PSGLFP+   A+EL K EGPAVEYHCNSCSADCSRKRYHC KQADFDLCT+CFN
Sbjct: 279  FTAQATPSGLFPDPMAADELLKQEGPAVEYHCNSCSADCSRKRYHCPKQADFDLCTECFN 338

Query: 351  NGKFGSDMSSSDFILMVPGEAAGVSGGKWTDQETLLLLEALELYKENWNEIAEHVATKTK 410
            +GKF SDMSSSDFILM P EA GV  GKWTDQETLLLLEALE++KENWNEIAEHVATKTK
Sbjct: 339  SGKFSSDMSSSDFILMEPAEAPGVGSGKWTDQETLLLLEALEIFKENWNEIAEHVATKTK 398

Query: 411  AQCILHFVQMPIEDMFLDCDDDVDGNLKETTDDAPTNGDTSASKDVAEASESKTGAVEGQ 470
            AQC+LHF+QMPIED FLD  D  D   K+TTD A +  D S  KD  E +E+K    E +
Sbjct: 399  AQCMLHFLQMPIEDAFLDQIDYKDPISKDTTDLAVSKDDNSVLKDAPEEAENKKRVDEDE 458

Query: 471  TQTSPMETSKPEDASELKICEDTSKPKDES----DVKVDEQMLKSEDTSEGKVGQETGEN 526
            T     E  +PED +E K+ +++SKP D S    +++ +++  K E   E +   E  EN
Sbjct: 459  TMK---EVPEPEDGNEEKVSQESSKPGDASEETNEMEAEQKTPKLETAIEERCKDEADEN 515

Query: 527  IALKALREAFEAVGYVPTHETPQSFAEVGNPVMALAAFLTLLGGPDLTTASARSSLKSIS 586
            IALKAL EAFE VG+  T E   SFA++GNPVM LAAFL  L G D+ TASAR+S+KS+ 
Sbjct: 516  IALKALTEAFEDVGHSSTPEASFSFADLGNPVMGLAAFLVRLAGSDVATASARASIKSLH 575

Query: 587  GNSPAMQLAAKHCFILEDPPGDKKEVAHSESIV--AEMADRDIQKDETLEDINVKECNSA 644
             NS  M LA +HC+ILEDPP +KK+   S+S    AE  D +  KD+  E+ + K    +
Sbjct: 576  SNS-GMLLATRHCYILEDPPDNKKDPTKSKSCSADAEGNDDNSHKDDQPEEKSKKAEEVS 634

Query: 645  SVLDERDLSNDHGDKKIEDSVPEEKRHAASLNEKPSEKLNG-----ATGPANQDTPEKDE 699
               D+R++ +    K+ +DSV EEK+   S  E  + KL+      ++ P   D  EK  
Sbjct: 635  LNSDDREMPDTDTGKETQDSVSEEKQ-PGSRTENSTTKLDAVQEKRSSKPVTTDNSEK-- 691

Query: 700  PGDLNELSNPKSPKDNQPSIVEESNDLPSKVLQSSQKESGEGS--SGEPAPPVDVEKDNS 757
            P D+   S  K         +++ N L S+   +SQ    + +  + +P    DVE    
Sbjct: 692  PVDIICPSQDKCSGKELQEPLKDGNKLSSENKDASQSTVSQSAADASQPEASRDVE---- 747

Query: 758  LLSDSLPSGKNEPDQRVLSNSVAEPSPPSKLTNDVDMVSDPQPLENNEPEKQITSSTEKP 817
             + D+L S K+  D   +  +V E    +K     D++S P             S +++P
Sbjct: 748  -MKDTLQSEKDPED---VVKTVGEKVQLAKEEGANDVLSTPD-----------KSVSQQP 792

Query: 818  SESTEAPKDVEMVSTSLPSEINEPQQTDSITGTETARVEDQNRDGQDEKHDSKETKNDQY 877
              S  AP++                      GT      + N +G+ EK   + TK+   
Sbjct: 793  IGSASAPEN----------------------GTAGG---NPNIEGKKEKDICEGTKDKYN 827

Query: 878  IDKLKHAAVTALSAAAVKAKLLACQEEDQIRQLATSLIEKQLQKLEAKLAFFNEMDNVTM 937
            I+KLK AA++A+SAAAVKAK LA QEEDQIRQL+ SLIEKQL KLEAKL+ FNE +++TM
Sbjct: 828  IEKLKRAAISAISAAAVKAKNLAKQEEDQIRQLSGSLIEKQLHKLEAKLSIFNEAESLTM 887

Query: 938  RVREQLERSRQRLYQERALIIQARLG--PSRVMQPSVPANRNPMTFANSVARPPMSMTSP 995
            RVREQLERSRQRLY ERA II ARLG  PS   + S+P NR    FAN   RPPM M  P
Sbjct: 888  RVREQLERSRQRLYHERAQIIAARLGVPPSMSSKASLPTNRIAANFANVAQRPPMGMAFP 947

Query: 996  RPPISRPMVPQSSTPSNPFGSTTTAGSSIRPSSQDNLSSV 1035
            R     P  P    P +   +TT  GSS      DN+SSV
Sbjct: 948  R--PPMPRPPGFPVPGSFVAATTMTGSSDPSPGSDNVSSV 985
Component of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9XI07|SWI3C_ARATH SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1 SV=1 Back     alignment and function description
>sp|O14470|SSR2_SCHPO SWI/SNF and RSC complexes subunit ssr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssr2 PE=1 SV=3 Back     alignment and function description
>sp|P43609|RSC8_YEAST Chromatin structure-remodeling complex protein RSC8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSC8 PE=1 SV=1 Back     alignment and function description
>sp|Q84JG2|SWI3B_ARATH SWI/SNF complex subunit SWI3B OS=Arabidopsis thaliana GN=SWI3B PE=1 SV=1 Back     alignment and function description
>sp|P97496|SMRC1_MOUSE SWI/SNF complex subunit SMARCC1 OS=Mus musculus GN=Smarcc1 PE=1 SV=2 Back     alignment and function description
>sp|Q92922|SMRC1_HUMAN SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1 SV=3 Back     alignment and function description
>sp|Q6PDG5|SMRC2_MOUSE SWI/SNF complex subunit SMARCC2 OS=Mus musculus GN=Smarcc2 PE=1 SV=2 Back     alignment and function description
>sp|Q8W475|SWI3A_ARATH SWI/SNF complex subunit SWI3A OS=Arabidopsis thaliana GN=SWI3A PE=1 SV=1 Back     alignment and function description
>sp|O13788|SSR1_SCHPO SWI/SNF and RSC complexes subunit ssr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssr1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1038
2241054071010 chromatin remodeling complex subunit [Po 0.954 0.981 0.595 0.0
2240778221005 chromatin remodeling complex subunit [Po 0.953 0.985 0.587 0.0
255536815983 Transcription regulatory protein SWI3, p 0.932 0.984 0.572 0.0
3594751701012 PREDICTED: SWI/SNF complex subunit SWI3D 0.948 0.973 0.548 0.0
3574732011041 SWI/SNF complex subunit SMARCC1 [Medicag 0.958 0.955 0.517 0.0
4494653891024 PREDICTED: SWI/SNF complex subunit SWI3D 0.961 0.974 0.515 0.0
3565444841016 PREDICTED: SWI/SNF complex subunit SWI3D 0.953 0.974 0.522 0.0
297741445983 unnamed protein product [Vitis vinifera] 0.915 0.966 0.524 0.0
3565410991018 PREDICTED: SWI/SNF complex subunit SWI3D 0.954 0.973 0.527 0.0
297802524983 hypothetical protein ARALYDRAFT_491219 [ 0.909 0.960 0.498 0.0
>gi|224105407|ref|XP_002313800.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222850208|gb|EEE87755.1| chromatin remodeling complex subunit [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1050 bits (2714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 607/1020 (59%), Positives = 724/1020 (70%), Gaps = 29/1020 (2%)

Query: 25   AASEPASSRRRAGAHKRKASALSATNASSTPSKRMTREKNLVAHTPIYNHNGPLTRARQG 84
            A++EP  SRRR G HKRKA++LS   +S  PSKR+TREK  +++  + NHNGP TRARQ 
Sbjct: 14   ASAEPGPSRRRPGGHKRKANSLSNFFSSPLPSKRLTREKAAISN--LSNHNGPFTRARQI 71

Query: 85   PTTLAAAAAFGGAPGSAGGKLEAARDDSTFEAIEELNKASEEWAALEAKIEADFEAIRSR 144
            P  LA++A   G       K+  A  D+     EE     EE   L+ +IEA+FE IRSR
Sbjct: 72   PNILASSALSAGV--KVEQKVATAVPDAAALVEEERRSKVEE---LQTEIEAEFEVIRSR 126

Query: 145  DSNVHVVPTHCGWFSWTKIHPLEEQALPAFFNGKSQDRTPDIYMEIRNWIMKKFHSNPIT 204
            DSN H+VP+HCGWFSWTKIHPLEE+ LP+FFNGKSQ RTPD Y+EIRNWIMKKF+SNP T
Sbjct: 127  DSNAHIVPSHCGWFSWTKIHPLEERLLPSFFNGKSQSRTPDTYLEIRNWIMKKFNSNPNT 186

Query: 205  QIELKDLSELEVGSLDARQEVMEFLDYWGLINFHPFPHVESSVANSDGDRMTDADSDAAA 264
             IE+KDLSELEV  LDARQEV+EFLDYWGLINFHP             D   +AD D AA
Sbjct: 187  LIEVKDLSELEVSDLDARQEVLEFLDYWGLINFHPLQF----------DSAPNADGDEAA 236

Query: 265  KKGSLLEKLYRFEEIKAGPPVAPMPSITFPAVPSGLFPESAIAEELAKLEGPAVEYHCNS 324
            KK S LEKL+ FE I+  P + P P++  P   S LFPESAIAEELAKLEGP+VEYHCNS
Sbjct: 237  KKDSSLEKLFCFEAIQPCPSIVPKPNLAAPTTSSRLFPESAIAEELAKLEGPSVEYHCNS 296

Query: 325  CSADCSRKRYHCQKQADFDLCTDCFNNGKFGSDMSSSDFILMVPGEAAGVSGGKWTDQET 384
            CSADCSRKRYHCQKQAD+DLC DCFNNGKFGS+MSSSDFILM P EAAG SGGKWTDQET
Sbjct: 297  CSADCSRKRYHCQKQADYDLCADCFNNGKFGSNMSSSDFILMEPAEAAGASGGKWTDQET 356

Query: 385  LLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDMFLDCDDDVDGNLKETTDDA 444
            LLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIED F D  +D++G  K T D  
Sbjct: 357  LLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDAFFDVTNDMNGTSKVTVDAD 416

Query: 445  PTNGDTSASKDVAEASESKTGAVEGQTQTSPMETSKPEDASELKICEDTSKPKDESDVKV 504
             T  +TS  KDV + SESKTGA E Q  T PME SKPED SE+K  +++++ +  S+V  
Sbjct: 417  ATVDETSGPKDVLDTSESKTGASEDQPLTPPMEASKPEDTSEVKGSQESTENEKSSEVIN 476

Query: 505  DEQMLKSEDTSEGKVGQETGENIALKALREAFEAVGYVPTHETPQSFAEVGNPVMALAAF 564
              ++ KSED S  KV +E GEN+AL+AL EAFEAVGY PT E   SF+EVGNPVMALA+F
Sbjct: 477  GPEISKSEDASGVKVSEEMGENVALRALTEAFEAVGYSPTPENRLSFSEVGNPVMALASF 536

Query: 565  LTLLGGPDLTTASARSSLKSISGNSPAMQLAAKHCFILEDPPGDKKEVAHSESIVAEMAD 624
            L  L GP++ TASARSSLKS+S N P MQLAA+HCF+LEDPP ++K+ + S+ +  EMAD
Sbjct: 537  LARLVGPNVATASARSSLKSLSSNYPGMQLAARHCFLLEDPPEERKKPSGSDCVATEMAD 596

Query: 625  RDIQKDETLEDINVKECNSASVLDERDLSNDHGDKKIEDSVPEEKRHAASLNEKPSEKLN 684
             D QKD+  E+ N KE +  S L +RDLS+DH DKK+ DSVPEEK+   +      EK+N
Sbjct: 597  HDAQKDKQ-EEKNQKENSPTSGLGDRDLSDDHRDKKVGDSVPEEKKPLDTSKGDSPEKVN 655

Query: 685  GATGPANQDTPEKDEPGDLNELSNPKSPKDNQPSIVEESNDLPSK--VLQSSQKESGEGS 742
                     + E+ EP    E SN + PKD+ PSIV+ES+ +P K     SS KE+ E S
Sbjct: 656  AVNEAETAVSHEEVEPCRSKESSNSELPKDHTPSIVKESDGIPPKSACPPSSFKETLEVS 715

Query: 743  SGEPAPPV-DVEKDNSLLSDSLPSGKNEPDQRVLSNSVAEPSPPSKLTNDVDMVSDPQPL 801
            S E    + +V KD  ++SD   S KNEP Q V S SV E S     + DVDMVSD  P 
Sbjct: 716  SAEEHSQLTEVAKDVDMVSDLKSSEKNEPSQSVASMSVDEHSQAGDASKDVDMVSDSLPA 775

Query: 802  ENNEPEKQITSSTEKPSESTEAPKDVEMVSTSLPSEINEPQQTDSITGTETARVEDQNRD 861
            + +  ++   S+    S+ TE+  DV+M+S S PSE+ +PQ     +G   A  E+  +D
Sbjct: 776  DKDGSQQPAKSNAGDHSQPTESTADVDMLS-SQPSEV-KPQGLKVESG---ATSEEGPKD 830

Query: 862  GQDEKHDSKETKNDQYIDKLKHAAVTALSAAAVKAKLLACQEEDQIRQLATSLIEKQLQK 921
             + EK DS+  K+D  IDK+K AAV+ALSAAAVKAKLLA QEEDQIRQLA SLIEKQL K
Sbjct: 831  SKKEKLDSEVIKDDNKIDKIKRAAVSALSAAAVKAKLLANQEEDQIRQLAASLIEKQLHK 890

Query: 922  LEAKLAFFNEMDNVTMRVREQLERSRQRLYQERALIIQARLG---PSRVMQPSVPANRNP 978
            LE KLAFFNEMD+V MRVREQL+RSRQRLYQERA II +RLG    SR + PS+PANR  
Sbjct: 891  LEMKLAFFNEMDSVIMRVREQLDRSRQRLYQERAQIIASRLGLPPSSRAVPPSLPANRIA 950

Query: 979  MTFANSVARPPMSMTSPRPPISRPMVPQSSTPSNPFGSTTTAGSSIRPSSQDNLSSVGMK 1038
            M FAN+  RPPMSMT+ RPPISRPM   + TP     +TTTAG+SIRPS Q+ LSSVG K
Sbjct: 951  MNFANAFPRPPMSMTAQRPPISRPMGALAPTPDTLVSTTTTAGNSIRPSGQEKLSSVGTK 1010

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224077822|ref|XP_002305423.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222848387|gb|EEE85934.1| chromatin remodeling complex subunit [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255536815|ref|XP_002509474.1| Transcription regulatory protein SWI3, putative [Ricinus communis] gi|223549373|gb|EEF50861.1| Transcription regulatory protein SWI3, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359475170|ref|XP_003631607.1| PREDICTED: SWI/SNF complex subunit SWI3D-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357473201|ref|XP_003606885.1| SWI/SNF complex subunit SMARCC1 [Medicago truncatula] gi|355507940|gb|AES89082.1| SWI/SNF complex subunit SMARCC1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449465389|ref|XP_004150410.1| PREDICTED: SWI/SNF complex subunit SWI3D-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356544484|ref|XP_003540680.1| PREDICTED: SWI/SNF complex subunit SWI3D-like [Glycine max] Back     alignment and taxonomy information
>gi|297741445|emb|CBI32576.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356541099|ref|XP_003539020.1| PREDICTED: SWI/SNF complex subunit SWI3D-like [Glycine max] Back     alignment and taxonomy information
>gi|297802524|ref|XP_002869146.1| hypothetical protein ARALYDRAFT_491219 [Arabidopsis lyrata subsp. lyrata] gi|297314982|gb|EFH45405.1| hypothetical protein ARALYDRAFT_491219 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1038
TAIR|locus:2036942807 SWI3C "SWITCH/sucrose nonferme 0.286 0.368 0.339 2.3e-47
UNIPROTKB|G3N0H4925 SMARCC1 "Uncharacterized prote 0.095 0.107 0.333 9.4e-35
POMBASE|SPAC23H3.10503 ssr2 "SWI/SNF and RSC complex 0.254 0.524 0.301 1.3e-34
ZFIN|ZDB-GENE-080514-31089 smarcc1a "SWI/SNF related, mat 0.123 0.117 0.296 1.3e-33
ASPGD|ASPL0000005061681 AN6705 [Emericella nidulans (t 0.194 0.296 0.276 2e-33
RGD|15977041135 Smarcc2 "SWI/SNF related, matr 0.123 0.112 0.310 1.4e-32
TAIR|locus:2051028469 SWI3B "switch subunit 3" [Arab 0.127 0.281 0.321 3.2e-32
UNIPROTKB|F1PVA91092 SMARCC2 "Uncharacterized prote 0.084 0.080 0.352 8.3e-32
UNIPROTKB|Q929221105 SMARCC1 "SWI/SNF complex subun 0.127 0.119 0.300 9.7e-31
ZFIN|ZDB-GENE-060503-273961 smarcc1b "SWI/SNF related, mat 0.095 0.103 0.366 1.8e-30
TAIR|locus:2036942 SWI3C "SWITCH/sucrose nonfermenting 3C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 433 (157.5 bits), Expect = 2.3e-47, Sum P(2) = 2.3e-47
 Identities = 109/321 (33%), Positives = 157/321 (48%)

Query:   137 DFEAIRSRDSN-VHVVPTHCGWFSWTKIHPLEEQALPAFFNGKSQDRTPDIYMEIRNWIM 195
             D E +  R  + VHV+P H  WF+   +  LE Q +P FF+GKS + TP+ YME RN I+
Sbjct:   163 DGEGVVKRFGDLVHVLPMHSDWFAPNTVDRLERQVVPQFFSGKSPNHTPESYMEFRNAIV 222

Query:   196 KKFHSNPITQIELKDLSELEVG-SLDARQEVMEFLDYWGLINF------HPFPHVESSVA 248
              K+  NP   + + D   L  G  ++    V  FLD+WG+IN+      HP P  + S  
Sbjct:   223 SKYVENPEKTLTISDCQGLVDGVDIEDFARVFRFLDHWGIINYCATAQSHPGPLRDVSDV 282

Query:   249 NSDGDRMTXXXXXXXXKKGSLLEKLYRFEEIKAGPPVAPMPSITFPAVPSGLFPESAIAE 308
               D +              SL++        K G   + +PS+       G  P+  I  
Sbjct:   283 REDTNGEVNVPSAALTSIDSLIKFDKPNCRHKGGEVYSSLPSL------DGDSPDLDI-- 334

Query:   309 ELAKLEGPAVEYHCNSCSADCSRKRYHCQKQADFDLCTDCFNNGKFGSDMSSSDFILMVP 368
                ++     + HCN CS       +  QK+ D  LC DCF++G+F    S  DF+ + P
Sbjct:   335 ---RIREHLCDSHCNHCSRPLPTVYFQSQKKGDILLCCDCFHHGRFVVGHSCLDFVRVDP 391

Query:   369 GEAAG-VSGGKWTDQXXXXXXXXXXXYKENWNEIAEHVATKTKAQCILHFVQMPIEDMFL 427
              +  G   G  WTDQ           Y ENW +IA+HV +K+KAQCILHF+++P+ED  L
Sbjct:   392 MKFYGDQDGDNWTDQETLLLLEAVELYNENWVQIADHVGSKSKAQCILHFLRLPVEDGLL 451

Query:   428 DCDDDVDGNLKETTDDAPTNG 448
             D + +V G    T  + PTNG
Sbjct:   452 D-NVEVSG---VTNTENPTNG 468
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0005515 "protein binding" evidence=IPI
GO:0006338 "chromatin remodeling" evidence=ISS
GO:0016514 "SWI/SNF complex" evidence=ISS
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0031048 "chromatin silencing by small RNA" evidence=RCA
GO:0040029 "regulation of gene expression, epigenetic" evidence=RCA
GO:0045132 "meiotic chromosome segregation" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
UNIPROTKB|G3N0H4 SMARCC1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
POMBASE|SPAC23H3.10 ssr2 "SWI/SNF and RSC complex subunit Ssr2" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080514-3 smarcc1a "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ASPGD|ASPL0000005061 AN6705 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
RGD|1597704 Smarcc2 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
TAIR|locus:2051028 SWI3B "switch subunit 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1PVA9 SMARCC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q92922 SMARCC1 "SWI/SNF complex subunit SMARCC1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060503-273 smarcc1b "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8VY05SWI3D_ARATHNo assigned EC number0.49810.92480.9746yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
CHB901
chromatin remodeling complex subunit (1010 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1038
COG5259531 COG5259, RSC8, RSC chromatin remodeling complex su 2e-38
cd0233645 cd02336, ZZ_RSC8, Zinc finger, ZZ type 1e-23
pfam0443380 pfam04433, SWIRM, SWIRM domain 8e-22
smart0029144 smart00291, ZnF_ZZ, Zinc-binding domain, present i 3e-13
COG5114432 COG5114, COG5114, Histone acetyltransferase comple 2e-12
pfam0056946 pfam00569, ZZ, Zinc finger, ZZ type 2e-10
cd0233549 cd02335, ZZ_ADA2, Zinc finger, ZZ type 5e-10
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 1e-09
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 1e-09
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 3e-09
cd0224946 cd02249, ZZ, Zinc finger, ZZ type 3e-08
cd0233849 cd02338, ZZ_PCMF_like, Zinc finger, ZZ type 9e-06
cd0233741 cd02337, ZZ_CBP, Zinc finger, ZZ type 2e-05
COG5271 4600 COG5271, MDN1, AAA ATPase containing von Willebran 5e-05
COG5259531 COG5259, RSC8, RSC chromatin remodeling complex su 1e-04
cd0234148 cd02341, ZZ_ZZZ3, Zinc finger, ZZ type 1e-04
cd0233449 cd02334, ZZ_dystrophin, Zinc finger, ZZ type 2e-04
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 3e-04
cd0234549 cd02345, ZZ_dah, Zinc finger, ZZ type 8e-04
>gnl|CDD|227584 COG5259, RSC8, RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information 
 Score =  151 bits (382), Expect = 2e-38
 Identities = 91/309 (29%), Positives = 145/309 (46%), Gaps = 22/309 (7%)

Query: 135 EADFEAIRSRDSNVH--VVPTHCGWFSWTKIHPLEEQALPAFFNGKSQDRTPDIYMEIRN 192
               EA        H  ++P++  WF  +KIH +E+++ P FFNG+S  +TP++Y + RN
Sbjct: 36  ILRVEAETFLMEQTHPIIIPSYAEWFDGSKIHEIEKRSNPEFFNGRSPSKTPEVYKDYRN 95

Query: 193 WIMKKFHSNPITQIELKDLSELEVGSLDARQEVMEFLDYWGLINFHPFPHVESSVANSDG 252
           +++  +  NP   + +        G + A   V  FL+ WGLIN+   P    S     G
Sbjct: 96  FMINSYRLNPNEYLTVTACRRNVAGDVAAIVRVHRFLEKWGLINYQVDPGTRPSTI---G 152

Query: 253 DRMTDADSDAAAKKGSLLEKLYRFE-------EIKAGPPVAPMPSITFPAVPSGLFPESA 305
             +T    D           L  F         +     +           PS   P+  
Sbjct: 153 PPLTSHFQDLH----DTPRGLSPFLPWGPINQRVLGAKEIEYETHKEENYSPSLKSPKKE 208

Query: 306 IAEELAKL--EGPAVEYHCNSCSADCSRKRYHCQKQADFDLCTDCFNNGKFGSDMSSSDF 363
              ++ +L          C+ C       RYH  +   ++ C++C++ G+F S+ +SSDF
Sbjct: 209 SQGKVDELKDHSEKHPSSCSCCGNKSFNTRYHNLRAEKYNSCSECYDQGRFPSEFTSSDF 268

Query: 364 ILMVPGEAAGVSGGK-WTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPI 422
               P   + +   K W+ QE LLLLE +E+Y ++W+++A HV TKTK QCILHF+Q+PI
Sbjct: 269 K---PVTISLLIRDKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQLPI 325

Query: 423 EDMFLDCDD 431
           ED +L   D
Sbjct: 326 EDNYLSKGD 334

Length = 531
>gnl|CDD|239076 cd02336, ZZ_RSC8, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|203011 pfam04433, SWIRM, SWIRM domain Back     alignment and domain information
>gnl|CDD|197633 smart00291, ZnF_ZZ, Zinc-binding domain, present in Dystrophin, CREB-binding protein Back     alignment and domain information
>gnl|CDD|227445 COG5114, COG5114, Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>gnl|CDD|144236 pfam00569, ZZ, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239075 cd02335, ZZ_ADA2, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|239069 cd02249, ZZ, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239078 cd02338, ZZ_PCMF_like, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239077 cd02337, ZZ_CBP, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|227584 COG5259, RSC8, RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>gnl|CDD|239081 cd02341, ZZ_ZZZ3, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|239074 cd02334, ZZ_dystrophin, Zinc finger, ZZ type Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|239085 cd02345, ZZ_dah, Zinc finger, ZZ type Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1038
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 100.0
KOG1279506 consensus Chromatin remodeling factor subunit and 100.0
PF0443386 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM 99.92
KOG0457438 consensus Histone acetyltransferase complex SAGA/A 99.92
COG5114432 Histone acetyltransferase complex SAGA/ADA, subuni 99.85
cd0233645 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present 98.97
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 98.92
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 98.67
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 98.66
PLN03000881 amine oxidase 98.62
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 98.56
PLN02328808 lysine-specific histone demethylase 1 homolog 98.52
cd0233549 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present 98.41
cd0224946 ZZ Zinc finger, ZZ type. Zinc finger present in dy 98.19
cd0234549 ZZ_dah Zinc finger, ZZ type. Zinc finger present i 98.0
cd0234043 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre 97.99
cd0234148 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present 97.98
cd0233849 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre 97.98
PLN02529738 lysine-specific histone demethylase 1 97.97
cd0234348 ZZ_EF Zinc finger, ZZ type. Zinc finger present in 97.93
smart0029144 ZnF_ZZ Zinc-binding domain, present in Dystrophin, 97.86
cd0233449 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger pr 97.86
PLN03212249 Transcription repressor MYB5; Provisional 97.82
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 97.81
cd0234445 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present 97.66
PF0056946 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc 97.6
PLN03091459 hypothetical protein; Provisional 97.56
cd0233945 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre 97.52
PLN03212249 Transcription repressor MYB5; Provisional 97.36
cd0233741 ZZ_CBP Zinc finger, ZZ type. Zinc finger present i 97.35
KOG0048238 consensus Transcription factor, Myb superfamily [T 97.15
PLN03091459 hypothetical protein; Provisional 96.98
cd0234243 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger pre 96.97
PLN02976 1713 amine oxidase 96.44
KOG4582278 consensus Uncharacterized conserved protein, conta 96.25
KOG0048238 consensus Transcription factor, Myb superfamily [T 96.17
KOG0049939 consensus Transcription factor, Myb superfamily [T 95.94
KOG1280381 consensus Uncharacterized conserved protein contai 95.59
KOG4286966 consensus Dystrophin-like protein [Cell motility; 94.96
KOG0049939 consensus Transcription factor, Myb superfamily [T 94.78
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 94.74
KOG0051607 consensus RNA polymerase I termination factor, Myb 90.29
KOG0051607 consensus RNA polymerase I termination factor, Myb 89.49
KOG4167907 consensus Predicted DNA-binding protein, contains 89.0
COG5118507 BDP1 Transcription initiation factor TFIIIB, Bdp1 87.97
KOG4301434 consensus Beta-dystrobrevin [Cytoskeleton] 86.21
KOG4282345 consensus Transcription factor GT-2 and related pr 84.43
KOG0050617 consensus mRNA splicing protein CDC5 (Myb superfam 84.08
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 82.03
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-81  Score=693.12  Aligned_cols=291  Identities=30%  Similarity=0.556  Sum_probs=226.3

Q ss_pred             HHHHHhHHHHHHHHhhcCCceEecCCCCCCCCCCCCCHHHHHhCccccCCCCCCCChHHHHHHHHHHHHHHHhCCCceee
Q 001648          128 AALEAKIEADFEAIRSRDSNVHVVPTHCGWFSWTKIHPLEEQALPAFFNGKSQDRTPDIYMEIRNWIMKKFHSNPITQIE  207 (1038)
Q Consensus       128 e~~~~~~~e~~~~~~s~qt~~iIIPSySsWFd~~~Ih~iEk~~lPEFF~gKs~skTPe~Yl~iRN~II~~yr~nP~~yLT  207 (1038)
                      |.-...+..+++..+..|+|+||||+|+.||++.+||+||++..||||+||+++|||++|+.||||||+.||+||.+|||
T Consensus        31 e~~~~~l~~e~~~Fl~~Q~~piiiPs~a~WFd~SKiHeIE~~snPeFF~~rs~~KTP~vYk~YR~FminsyRL~p~eYLt  110 (531)
T COG5259          31 EKKTTILRVEAETFLMEQTHPIIIPSYAEWFDGSKIHEIEKRSNPEFFNGRSPSKTPEVYKDYRNFMINSYRLNPNEYLT  110 (531)
T ss_pred             ccccchhhhhhhhhhhccCCceeccchhhhccccccccccccCCchhhcCCCCCCCHHHHHHHHhhccceeecCCcceEE
Confidence            34445567778888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcccccchHHHHHHHHhhhhhcccccCCCCCCCCCccCCCCCCCccccchHHHhhhhhhhhccccccccCCCCCCC
Q 001648          208 LKDLSELEVGSLDARQEVMEFLDYWGLINFHPFPHVESSVANSDGDRMTDADSDAAAKKGSLLEKLYRFEEIKAGPPVAP  287 (1038)
Q Consensus       208 ~T~cRr~L~GDv~aI~RVh~FLE~WGLINy~~~P~~~~~~~~~~g~~~~~~~s~~~~~k~s~i~~L~~Fe~~qs~~P~~~  287 (1038)
                      ||+||||++||||+|.|||+||++|||||||++|.+.|...   |+..+.    ......+.++.|+.|....   |...
T Consensus       111 vTa~RRNvagDV~aivrvHrFLekWGLINYqvdp~trPs~I---gPplt~----h~q~l~dtP~gl~p~l~~~---~~~~  180 (531)
T COG5259         111 VTACRRNVAGDVAAIVRVHRFLEKWGLINYQVDPGTRPSTI---GPPLTS----HFQDLHDTPRGLSPFLPWG---PINQ  180 (531)
T ss_pred             eeeehhccchhHHHHHHHHHHHHHhcceeeccCCCCCcccc---CCCcch----hhHHHhhCccccccccCCC---Cccc
Confidence            99999999999999999999999999999999988776411   110100    1112223334444443211   1111


Q ss_pred             CCCccCC---CCCCCCCCchhHHHHHHh--------hcCC--CccccCCCCCCCCCCCceeccCCCCCccccccccCCCC
Q 001648          288 MPSITFP---AVPSGLFPESAIAEELAK--------LEGP--AVEYHCNSCSADCSRKRYHCQKQADFDLCTDCFNNGKF  354 (1038)
Q Consensus       288 ~~~~~sp---~~~~~l~p~~~~~ed~~~--------~~~~--sv~~~Cn~Cg~dcs~~~Y~C~kc~dfdLC~dCFs~G~f  354 (1038)
                      .......   .+..+ ++.+...+....        ...+  ....+|..||+.|...|||.++..++++|..||..|+|
T Consensus       181 ~~~~a~~~e~~~~k~-~~~sps~~~~~k~s~~k~~el~~~~~~~~~~C~~cG~~~~~t~y~nlra~~~n~C~~C~~qg~f  259 (531)
T COG5259         181 RVLGAKEIEYETHKE-ENYSPSLKSPKKESQGKVDELKDHSEKHPSSCSCCGNKSFNTRYHNLRAEKYNSCSECYDQGRF  259 (531)
T ss_pred             cccccchhhhhhhcc-CCCCchhhhhhhhcCCCccccccccccCCceeeccCccccchhhhhhhhhhcccchHHHhcCcC
Confidence            1111000   00000 011111111111        0111  12379999999999999999988899999999999999


Q ss_pred             CCCCCCCCceeecCCCCCCCCCCCCCHHHHHHHHHHHHHhccCHHHHHHHhCCCCHHHHHHHHHhCCcCCCCCCCCC
Q 001648          355 GSDMSSSDFILMVPGEAAGVSGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDMFLDCDD  431 (1038)
Q Consensus       355 p~h~sshDFi~ie~~e~~~~~~~~WTdqEeLLLLEAIEkyGgNW~kIAEHVGTKT~eECIlHFLqLPIED~fLe~~d  431 (1038)
                      +....+.||..++.....  .+..||.||++||||||++||++|++||.|||+||++|||+|||+|||+|.||...+
T Consensus       260 ~s~~~ssDf~~v~~~~~~--~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~LPieD~~l~k~~  334 (531)
T COG5259         260 PSEFTSSDFKPVTISLLI--RDKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQLPIEDNYLSKGD  334 (531)
T ss_pred             CCccccccchhhhhhccc--ccccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcCCcchhhhhccc
Confidence            999999999998765432  467999999999999999999999999999999999999999999999999998754

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>cd02336 ZZ_RSC8 Zinc finger, ZZ type Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>PLN03000 amine oxidase Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>PLN02328 lysine-specific histone demethylase 1 homolog Back     alignment and domain information
>cd02335 ZZ_ADA2 Zinc finger, ZZ type Back     alignment and domain information
>cd02249 ZZ Zinc finger, ZZ type Back     alignment and domain information
>cd02345 ZZ_dah Zinc finger, ZZ type Back     alignment and domain information
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type Back     alignment and domain information
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type Back     alignment and domain information
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type Back     alignment and domain information
>PLN02529 lysine-specific histone demethylase 1 Back     alignment and domain information
>cd02343 ZZ_EF Zinc finger, ZZ type Back     alignment and domain information
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein Back     alignment and domain information
>cd02334 ZZ_dystrophin Zinc finger, ZZ type Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>cd02344 ZZ_HERC2 Zinc finger, ZZ type Back     alignment and domain information
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>cd02337 ZZ_CBP Zinc finger, ZZ type Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type Back     alignment and domain information
>PLN02976 amine oxidase Back     alignment and domain information
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only] Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only] Back     alignment and domain information
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription] Back     alignment and domain information
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription] Back     alignment and domain information
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton] Back     alignment and domain information
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1038
2fq3_A104 Structure And Function Of The Swirm Domain, A Conse 1e-09
2yus_A79 Solution Structure Of The Sant Domain Of Human SwiS 2e-08
>pdb|2FQ3|A Chain A, Structure And Function Of The Swirm Domain, A Conserved Protein Module Found In Chromatin Regulatory Complexes Length = 104 Back     alignment and structure 
Iteration: 1

 Score = 62.8 bits (151), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 153 THCGWFSWTKIHPLEEQALPAFFNGKSQDRTPDIYMEIRNWIMKKFHSNPITQIELKDLS 212
           ++  WF+  KIH +E Q+LP FF  +   +TP++YM  RN+++  +  NP     +    
Sbjct: 15  SYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTAR 74
Query: 213 ELEVGSLDARQEVMEFLDYWGLINFH 238
               G   A   + +FL  WGLIN+ 
Sbjct: 75  RNVSGDAAALFRLHKFLTKWGLINYQ 100
>pdb|2YUS|A Chain A, Solution Structure Of The Sant Domain Of Human SwiSNF- Related Matrix-Associated Actin-Dependent Regulator Of Chromatin Subfamily C Member 1 Length = 79 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1038
2fq3_A104 Transcription regulatory protein SWI3; four-helix 1e-40
2dce_A111 KIAA1915 protein; swirm domain, structural genomic 2e-31
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 6e-24
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 3e-15
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 4e-15
1tot_A52 CREB-binding protein; zinc binding, CBP, TAZ2, tra 1e-14
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 6e-11
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 9e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
2e5r_A63 Dystrobrevin alpha; ZZ domain, structural genomics 5e-09
2dip_A98 Zinc finger SWIM domain-containing protein 2; ZZ d 4e-07
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 5e-07
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 6e-07
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 6e-07
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 6e-07
2fc7_A82 ZZZ3 protein; structure genomics, ZZ domain, struc 1e-06
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 5e-06
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 9e-06
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 3e-05
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 4e-05
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 6e-05
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 1e-04
2xag_A852 Lysine-specific histone demethylase 1; amine oxida 1e-04
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 1e-04
2z3y_A662 Lysine-specific histone demethylase 1; chromatin, 3e-04
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 4e-04
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18 Length = 104 Back     alignment and structure
 Score =  143 bits (363), Expect = 1e-40
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 4/102 (3%)

Query: 144 RDSNVH----VVPTHCGWFSWTKIHPLEEQALPAFFNGKSQDRTPDIYMEIRNWIMKKFH 199
           R S+ H    +  ++  WF+  KIH +E Q+LP FF  +   +TP++YM  RN+++  + 
Sbjct: 2   RGSHHHHHHGMASSYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYR 61

Query: 200 SNPITQIELKDLSELEVGSLDARQEVMEFLDYWGLINFHPFP 241
            NP     +        G   A   + +FL  WGLIN+    
Sbjct: 62  LNPNEYFSVTTARRNVSGDAAALFRLHKFLTKWGLINYQVDS 103
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6 Length = 52 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 63 Back     alignment and structure
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6 Length = 98 Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73 Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61 Back     alignment and structure
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6 Length = 82 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Length = 235 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852 Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Length = 482 Back     alignment and structure
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1038
d2fq3a185 a.4.1.18 (A:311-395) Transcription regulatory prot 8e-32
d2dw4a1102 a.4.1.18 (A:172-273) Lysine-specific histone demet 2e-23
d1tota152 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse 4e-13
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 8e-09
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 1e-08
d2fc7a169 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing p 6e-08
d2crga157 a.4.1.3 (A:8-64) Metastasis associated protein MTA 6e-08
d2dipa185 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing p 2e-07
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 2e-07
d2cqra160 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 1e-06
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 1e-06
d1x41a147 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T 8e-06
d1gv2a247 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou 2e-05
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 3e-05
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 3e-04
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 0.001
d1w0ta_52 a.4.1.4 (A:) DNA-binding domain of human telomeric 0.003
>d2fq3a1 a.4.1.18 (A:311-395) Transcription regulatory protein swi3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SWIRM domain
domain: Transcription regulatory protein swi3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  116 bits (293), Expect = 8e-32
 Identities = 28/82 (34%), Positives = 43/82 (52%)

Query: 156 GWFSWTKIHPLEEQALPAFFNGKSQDRTPDIYMEIRNWIMKKFHSNPITQIELKDLSELE 215
            WF+  KIH +E Q+LP FF  +   +TP++YM  RN+++  +  NP     +       
Sbjct: 2   KWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNV 61

Query: 216 VGSLDARQEVMEFLDYWGLINF 237
            G   A   + +FL  WGLIN+
Sbjct: 62  SGDAAALFRLHKFLTKWGLINY 83
>d2dw4a1 a.4.1.18 (A:172-273) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57 Back     information, alignment and structure
>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1038
d2fq3a185 Transcription regulatory protein swi3 {Baker's yea 99.97
d2dw4a1102 Lysine-specific histone demethylase 1, LSD1 {Human 99.93
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 98.92
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 98.58
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 98.56
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 98.53
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 98.5
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 98.42
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 98.36
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 98.35
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 98.22
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 98.14
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 98.08
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 98.06
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 97.94
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 97.71
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 97.45
d2fc7a169 Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu 97.39
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.36
d2dipa185 Zinc finger ZZ-type-containing protein 2 {Human (H 96.93
d1wgxa_73 Hypothetical protein C14orf106 (KIAA1903) {Human ( 96.84
d1tota152 CREB-binding protein, CBP {Mouse (Mus musculus) [T 96.4
d2cuja1101 Transcriptional adaptor 2-like, TADA2L {Mouse (Mus 95.93
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 95.29
d1ofcx152 SANT domain of the nucleosome remodeling ATPase IS 92.99
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 87.93
>d2fq3a1 a.4.1.18 (A:311-395) Transcription regulatory protein swi3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SWIRM domain
domain: Transcription regulatory protein swi3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.5e-31  Score=226.98  Aligned_cols=85  Identities=33%  Similarity=0.688  Sum_probs=83.7

Q ss_pred             CCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             99999999998989727642379999999589999999999999719894364544310014546789999986545133
Q 001648          155 CGWFSWTKIHPLEEQALPAFFNGKSQDRTPDIYMEIRNWIMKKFHSNPITQIELKDLSELEVGSLDARQEVMEFLDYWGL  234 (1038)
Q Consensus       155 SsWFd~~~Ih~iEk~~lPEFF~gKS~~kTPe~Yl~iRN~II~~yr~nP~~yLT~T~cRr~L~GDv~aI~RVh~FLE~WGL  234 (1038)
                      |+||+|++||+|||++|||||++++..|||++|+.|||+||++||.||.+|||+|+||+++.||++++.|||+||++||+
T Consensus         1 s~WF~~~~i~~iE~~~lPeff~~~~~~kt~~~Yl~iRN~Il~~w~~np~~~Lt~~~~~~~~~~d~~~~~ri~~FL~~~G~   80 (85)
T d2fq3a1           1 SKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSGDAAALFRLHKFLTKWGL   80 (85)
T ss_dssp             CTTCCTTCCCHHHHHHCGGGCCSSCTTSCHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHSCSCHHHHHHHHHHHHHTTS
T ss_pred             CCCCCCCCCCHHHHHHCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf             98878785789999888797558998889899999999999999849871462999974636789999999999998295


Q ss_pred             CCCCC
Q ss_conf             12578
Q 001648          235 INFHP  239 (1038)
Q Consensus       235 INy~~  239 (1038)
                      ||||+
T Consensus        81 INf~v   85 (85)
T d2fq3a1          81 INYQV   85 (85)
T ss_dssp             SSSCC
T ss_pred             CCCCC
T ss_conf             17569
>d2dw4a1 a.4.1.18 (A:172-273) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cuja1 a.4.1.18 (A:8-108) Transcriptional adaptor 2-like, TADA2L {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure