Citrus Sinensis ID: 001653

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------104
Protein Sequence
MNASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGQPLSKSCNDNGLTTVTPEASTENEGDSLIDTDSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTSCYYFVADNLIPRRFYRGWM
Secondary Structure (PSIPRED)
cccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEccccccccccccHHccccccccEEEcccccccccccHHHHcccccccEEEccccccccccccHHccccccccEEEccccccccccccHHHHccccccccEEEcccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEccccccccccccccccccccEEEccccccEEEcccccccccccccccEEEcccccccccccHHHHccccccEEEccccccEEEcccHHHHccccccEEEcccccccEEccccccccccccEEEccccEEEEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccEEEEEccccccccccccEEEccccccEEcccccccccccccEEEcccccccccccccccccccccEEEccccEEEccccHHHHccccccEEEccccccEEccccccccccccEEEccccccEEcccccccccccccEEEcccccccccccHHHHccccccEEEccccEEEEcccccccccccccEEEccccccccccccHHHccccccccccccccccHHHcccccccccccccccccccccEEEEEEEEcccEEEEccccccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEHHHHHHHHHHHcccHHHHHHHHHHHHHHcEEEEEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHcccccccEEEcccccccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHccccccEEEccccccccccccHHHccccccEEEEcccccccccccccccHHHccccccEEEEcccccccccccHHHHHccccccEEEccccccccccccHHHccccccEEEEcccccccccccHHHHcccccccEEEEcccccccccccccHHHccccccEEEEEccccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEEEccccccccccHHHcccccccEEEEccccccccccccccccccccccEEEEEccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHHHHcccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHccccccEEEEcccccccccccHHHcccccEEEEcccccccccccHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHccHHHHHccccccccccccccHcccccccccccccccccccEEEEEEcccccccccHHHHHHcEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHccccccccHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mnaslftpfqqlesldlswnniagcvqneslerlsrltnlkflylndnhfnnsifsslgglsslrhlsladnrlngsidikglnslsnleeldmtgnaienlvvpkdfrglrklntlylggsgipridgskvlqsigslpslktlYLSHTKFKGTVVNqklhnftnleelildesdLHVSQLLQSIASFTSLKHLSMQDCVLkgalhgqdflkfknleyldmgwvqVDVNTNFLQIVgesmpslnflsltnsslnkhtildQGLCQLVHlqglyirdndlrdglpwcLANMTSLQVLYASsnqltgnispgLCELVLLRKLyidnndlrgslplcLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELIlsnnhffqipisleplfnlsklqtfngeinaqteshydsltpkfqltsislsgyvdggtfpeflyhqhdlnsvnlshlnlsgefpnwllennTNLETLLLANnslfgsfrmpihshqklaTLDVFNnffqghipveigtylpglmelnlsrnafngsipssfaDMKMLERLdisnnqltgeipermatgcFSLEILALSNNrlqghifsekfnltnlmtlqldgnnfigeipESLSKCYMlrglylsdnhlfgkiprwlgnlptlqyiimpnnnlegpipiefcqrdslkildlsnnsifgtlpscfspasieqVHLSKNKIEGRLesiihdnphlvtLDLSynslhgsipnridrlpQLNYLLLAHNYIKGEIPVQLCQLKEVRLIdlshnnlsgrippclvntslnegyhgevaptsiwcrrasvyrsaclpgqssppmgkeetVQFTTKNMSYYYQGRILtsmsgidlscnkltgeiptqigYLTRIHALNlshnnltgtipttfsnlkQIESLDLSYnllhgkippqlivLNTLEVFKVAYNNlsgkipdraqfstfeedsyegnpflcgqplskscndnglttvtpeastenegdslidtdsFLITFTVSYGIVIIGIIGVlyinpywrRRWFYLVEVCMTSCyyfvadnliprrfyrgwm
Flexible Loop (DISEMBL)
MNASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENlvvpkdfrglRKLNTLYLggsgipridgSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLShnnlsgripPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSAclpgqssppmgkEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGQPLSKSCNDNGLTTVtpeastenegdsliDTDSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTSCYyfvadnlipRRFYRGWM
Low Complexity Region (SEG)
MNASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFsslgglsslrhlslADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPslnflsltnsslnKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDlnsvnlshlnlsGEFPnwllenntnletlllannSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGQPLSKSCNDNGLTTVTPEASTENEGDSLIDTDSFLITFTVSYgiviigiigvLYINPYWRRRWFYLVEVCMTSCYYFVADNLIPRRFYRGWM
Disordered region (IsUnstruct)
******TPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACL*************VQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFE***YEGNPFLCG***************************LIDTDSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTSCYYFVADNLIPRRFYRGW*
Disordered Region (DISOPRED)
MNASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGQPL***************************TDSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTSCYYFVADNLIPRRFYRGWM
Disordered Region (DISEMBL)
MNASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGQPLSKSCNDNGLTTVTPEASTENEGDSLIDTDSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTSCYYFVADNLIPRRFYRGWM
Disordered Region (DISPRO)
MNASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGQPLSKSC*******************SLIDTDSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTSCYYFVADNLIPRRFYRGW*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGQPLSKSCNDNGLTTVTPEASTENEGDSLIDTDSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTSCYYFVADNLIPRRFYRGWM
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1037	2.2.26 [Sep-21-2011]
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.708	0.588	0.31	1e-75
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.643	0.532	0.306	6e-72
Q9C9H7	847	Receptor-like protein 12	no	no	0.640	0.783	0.299	5e-63
Q9LHP4	1141	Receptor-like protein kin	no	no	0.551	0.501	0.315	2e-61
Q9FL28	1173	LRR receptor-like serine/	no	no	0.648	0.572	0.299	4e-61
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.615	0.535	0.294	2e-60
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.648	0.609	0.306	2e-60
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.527	0.478	0.297	3e-59
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.595	0.561	0.32	1e-58
Q9SHI3	729	Receptor-like protein 2 O	no	no	0.542	0.772	0.312	2e-57

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  285 bits (730), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 248/800 (31%), Positives = 389/800 (48%), Gaps = 65/800 (8%)

Query: 264  LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYI 323
            L  LV+++ L I DN+L   +P  L N+ +LQ+L  +S +LTG I   L  LV ++ L +
Sbjct: 139  LGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLIL 198

Query: 324  DNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFF-QIPI 382
             +N L G +P  L N + L V   + N L   I +  L  L ++E L L+NN    +IP 
Sbjct: 199  QDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAE-LGRLENLEILNLANNSLTGEIPS 257

Query: 383  SLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLN 442
             L  +  L  L     ++         SL     L ++ LS     G  PE  ++   L 
Sbjct: 258  QLGEMSQLQYLSLMANQLQGLIPK---SLADLGNLQTLDLSANNLTGEIPEEFWNMSQLL 314

Query: 443  SVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQG 502
             + L++ +LSG  P  +  NNTNLE L+L+   L G   + +   Q L  LD+ NN   G
Sbjct: 315  DLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAG 374

Query: 503  HIP------VEI-----------GTYLPGLMELN------LSRNAFNGSIPSSFADMKML 539
             IP      VE+           GT  P +  L       L  N   G +P   + ++ L
Sbjct: 375  SIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKL 434

Query: 540  ERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFI 599
            E L +  N+ +GEIP+ +   C SL+++ +  N  +G I      L  L  L L  N  +
Sbjct: 435  EVLFLYENRFSGEIPQEIGN-CTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELV 493

Query: 600  GEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDS 659
            G +P SL  C+ L  L L+DN L G IP   G L  L+ +++ NN+L+G +P       +
Sbjct: 494  GGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRN 553

Query: 660  LKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHG 719
            L  ++LS+N + GT+      +S     ++ N  E  +   + ++ +L  L L  N L G
Sbjct: 554  LTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTG 613

Query: 720  SIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTS-- 777
             IP  + ++ +L+ L ++ N + G IP+QL   K++  IDL++N LSG IPP L   S  
Sbjct: 614  KIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQL 673

Query: 778  ----LNEGYHGEVAPTSIW-CRRASVYRSACLPGQSSPPMGKEETVQFTTKNM----SYY 828
                L+     E  PT ++ C +  V     L G S      +E       N+       
Sbjct: 674  GELKLSSNQFVESLPTELFNCTKLLVL---SLDGNSLNGSIPQEIGNLGALNVLNLDKNQ 730

Query: 829  YQGRILTSMSGID------LSCNKLTGEIPTQIGYLTRIH-ALNLSHNNLTGTIPTTFSN 881
            + G +  +M  +       LS N LTGEIP +IG L  +  AL+LS+NN TG IP+T   
Sbjct: 731  FSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGT 790

Query: 882  LKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNP 941
            L ++E+LDLS+N L G++P  +  + +L    V++NNL GK+  + QFS +  DS+ GN 
Sbjct: 791  LSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL--KKQFSRWPADSFLGNT 848

Query: 942  FLCGQPLSKSCNDNGLTTVTPEASTENEGDSLIDTDSFLITFTVSYGIVIIGIIGVLYIN 1001
             LCG PLS+ CN          ++ + +G   +   S +I   +S  +  IG++ +L I 
Sbjct: 849  GLCGSPLSR-CN-------RVRSNNKQQG---LSARSVVIISAIS-ALTAIGLM-ILVIA 895

Query: 1002 PYWRRRWFYLVEVCMTSCYY 1021
             ++++R  +  +V   S  Y
Sbjct: 896  LFFKQRHDFFKKVGHGSTAY 915

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  273 bits (697), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 230/750 (30%), Positives = 353/750 (47%), Gaps = 83/750 (11%)

Query: 264 LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYI 323
           L  LV+L+ L + DN+L   +P    N+ +LQ+L  +S +LTG I      LV L+ L +
Sbjct: 140 LGSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIPSRFGRLVQLQTLIL 199

Query: 324 DNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFF-QIPI 382
            +N+L G +P  + N TSL +   ++N+L  ++ +  L  L +++ L L +N F  +IP 
Sbjct: 200 QDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAE-LNRLKNLQTLNLGDNSFSGEIPS 258

Query: 383 SLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLN 442
            L  L ++  L     ++          LT    L ++ LS     G   E  +  + L 
Sbjct: 259 QLGDLVSIQYLNLIGNQLQGLIPKR---LTELANLQTLDLSSNNLTGVIHEEFWRMNQLE 315

Query: 443 SVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQG 502
            + L+   LSG  P  +  NNT+L+ L L+   L G     I + Q L  LD+ NN   G
Sbjct: 316 FLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTG 375

Query: 503 HIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCF 562
            IP  +   L  L  L L+ N+  G++ SS +++  L+   + +N L G++P+ +     
Sbjct: 376 QIPDSL-FQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGF-LG 433

Query: 563 SLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHL 622
            LEI+ L  NR  G +  E  N T L  +   GN   GEIP S+ +   L  L+L +N L
Sbjct: 434 KLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENEL 493

Query: 623 FGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLP-SCFSPA 681
            G IP  LGN   +  I + +N L G IP  F    +L++  + NNS+ G LP S  +  
Sbjct: 494 VGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLK 553

Query: 682 SIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYI 741
           ++ +++ S NK  G +  +   + +L + D++ N   G IP  + +   L+ L L  N  
Sbjct: 554 NLTRINFSSNKFNGSISPLCGSSSYL-SFDVTENGFEGDIPLELGKSTNLDRLRLGKNQF 612

Query: 742 KGEIPVQLCQLKEVRLIDLSHNNLSGRIP------PCLVNTSLNEGYHGEVAPTSIWCRR 795
            G IP    ++ E+ L+D+S N+LSG IP        L +  LN  Y   V PT  W  +
Sbjct: 613 TGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPT--WLGK 670

Query: 796 ASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQI 855
             +     L   S+  +G   T  F+  N        ILT    + L  N L G IP +I
Sbjct: 671 LPLLGELKL--SSNKFVGSLPTEIFSLTN--------ILT----LFLDGNSLNGSIPQEI 716

Query: 856 GYLTRIHALNLSH----------------------------------------------- 868
           G L  ++ALNL                                                 
Sbjct: 717 GNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDL 776

Query: 869 --NNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDR 926
             NN TG IP+T S L ++ESLDLS+N L G++P Q+  + +L    ++YNNL GK+  +
Sbjct: 777 SYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL--K 834

Query: 927 AQFSTFEEDSYEGNPFLCGQPLSKSCNDNG 956
            QFS ++ D++ GN  LCG PLS  CN  G
Sbjct: 835 KQFSRWQADAFVGNAGLCGSPLSH-CNRAG 863

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  243 bits (621), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 227/757 (29%), Positives = 339/757 (44%), Gaps = 93/757 (12%)

Query: 312  LCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELI 371
            L +L  LR L + N +L G +P  L NL+ L ++++ +N+    I +S + +L  +  LI
Sbjct: 106  LFKLQYLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPAS-IGNLNQLRHLI 164

Query: 372  LSNNHFF-QIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGT 430
            L+NN    +IP SL  L  L  L+ F+  +  +     DS+    QL ++SL+     G 
Sbjct: 165  LANNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIP---DSIGDLKQLRNLSLASNNLIGE 221

Query: 431  FPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKL 490
             P  L +  +L  + L+H  L GE P   + N   L  +   NNSL G+  +   +  KL
Sbjct: 222  IPSSLGNLSNLVHLVLTHNQLVGEVPA-SIGNLIELRVMSFENNSLSGNIPISFANLTKL 280

Query: 491  ATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLT 550
            +   + +N F    P ++  +   L   ++S N+F+G  P S   +  LE + +  NQ T
Sbjct: 281  SIFVLSSNNFTSTFPFDMSIF-HNLEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFT 339

Query: 551  GEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCY 610
            G I     +    L+ L L  NRL G I      L NL  L +  NNF G IP ++SK  
Sbjct: 340  GPIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDISHNNFTGAIPPTISKLV 399

Query: 611  MLRGLYLSDNHLFGKIPRWLGNLPTL--------------------QYIIMPNNNLEGPI 650
             L  L LS N+L G++P  L  L T+                    + + + +N+ +GPI
Sbjct: 400  NLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFENTSQEEALIEELDLNSNSFQGPI 459

Query: 651  PIEFCQRDSLKILDLSNNSIFGTLPSCFS--PASIEQVHLSKNKIEGRLESIIHDNPHLV 708
            P   C+  SL  LDLSNN   G++PSC      SI++++L  N   G L  I      LV
Sbjct: 460  PYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELV 519

Query: 709  TLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQL---------------- 752
            +LD+S+N L G  P  +     L  + +  N IK   P  L  L                
Sbjct: 520  SLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYGP 579

Query: 753  ----------KEVRLIDLSHNNLSGRIPPCLVN-----TSLNEGYHGEVAPTSIWCRRAS 797
                      + +R+ID+SHNN SG +PP   +     T+L E     +  T  W    S
Sbjct: 580  LYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYM--TEFWRYADS 637

Query: 798  VYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGY 857
             Y                  ++   K +   ++ RI      ID S NK+ G IP  +GY
Sbjct: 638  YYHE----------------MEMVNKGVDMSFE-RIRRDFRAIDFSGNKINGNIPESLGY 680

Query: 858  LTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYN 917
            L  +  LNLS N  T  IP   +NL ++E+LD+S N L G+IP  L  L+ L     ++N
Sbjct: 681  LKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHN 740

Query: 918  NLSGKIPDRAQFSTFEEDSYEGNPFLCGQPLSKSCNDNGL---TTVTPEASTENEGDSLI 974
             L G +P   QF   +  S+  NP L G  L   C D G    T+  PE  +E E +   
Sbjct: 741  LLQGPVPRGTQFQRQKCSSFLDNPGLYG--LEDICRDTGALNPTSQLPEDLSEAEENMFN 798

Query: 975  DTDSFLITFTVSYGI-VIIG-IIGVLYINPYWRRRWF 1009
                  +   ++YG  V+ G +IG  Y +      WF
Sbjct: 799  -----WVAAAIAYGPGVLCGLVIGHFYTSH--NHEWF 828

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  238 bits (607), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 203/644 (31%), Positives = 315/644 (48%), Gaps = 72/644 (11%)

Query: 318 LRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHF 377
           L+KL I   +L G+LP  L +   L+VLD+S N L  +I  S L  L ++E LIL++N  
Sbjct: 107 LQKLTISGANLTGTLPESLGDCLGLKVLDLSSNGLVGDIPWS-LSKLRNLETLILNSNQL 165

Query: 378 F-QIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLY 436
             +IP  +     L  L  F+  +     +    L+    L  I + G            
Sbjct: 166 TGKIPPDISKCSKLKSLILFDNLLTGSIPTELGKLS---GLEVIRIGG------------ 210

Query: 437 HQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVF 496
                      +  +SG+ P+ +  + +NL  L LA  S+ G+    +   +KL TL ++
Sbjct: 211 -----------NKEISGQIPSEI-GDCSNLTVLGLAETSVSGNLPSSLGKLKKLETLSIY 258

Query: 497 NNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPER 556
                G IP ++G     L++L L  N+ +GSIP     +  LE+L +  N L G IPE 
Sbjct: 259 TTMISGEIPSDLGN-CSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEE 317

Query: 557 MATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLY 616
           +   C +L+++ LS N L G I S    L+ L    +  N F G IP ++S C  L  L 
Sbjct: 318 IGN-CSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQ 376

Query: 617 LSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPS 676
           L  N + G IP  LG L  L      +N LEG IP        L+ LDLS NS+ GT+PS
Sbjct: 377 LDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPS 436

Query: 677 -CFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLL 735
             F   ++ ++ L  N + G +   I +   LV L L +N + G IP+ I  L ++N+L 
Sbjct: 437 GLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLD 496

Query: 736 LAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIP-PC-------LVNTSLNEGYHGEVA 787
            + N + G++P ++    E+++IDLS+N+L G +P P        +++ S N+ + G++ 
Sbjct: 497 FSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQ-FSGKIP 555

Query: 788 PTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSM---SGI---D 841
                   AS+ R   L                 +KN+   + G I TS+   SG+   D
Sbjct: 556 --------ASLGRLVSL------------NKLILSKNL---FSGSIPTSLGMCSGLQLLD 592

Query: 842 LSCNKLTGEIPTQIGYLTRIH-ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 900
           L  N+L+GEIP+++G +  +  ALNLS N LTG IP+  ++L ++  LDLS+N+L G + 
Sbjct: 593 LGSNELSGEIPSELGDIENLEIALNLSSNRLTGKIPSKIASLNKLSILDLSHNMLEGDLA 652

Query: 901 PQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLC 944
           P L  +  L    ++YN+ SG +PD   F        EGN  LC
Sbjct: 653 P-LANIENLVSLNISYNSFSGYLPDNKLFRQLSPQDLEGNKKLC 695

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  237 bits (604), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 218/728 (29%), Positives = 330/728 (45%), Gaps = 56/728 (7%)

Query: 259 ILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLL 318
           +L   +  L +LQ L +  N     +P  +  +T L  L    N  +G+I  G+ EL  +
Sbjct: 87  VLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNI 146

Query: 319 RKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFF 378
             L + NN L G +P  +   +SL ++   YN LT  I    L  L  ++  + + NH  
Sbjct: 147 FYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPEC-LGDLVHLQMFVAAGNHLT 205

Query: 379 -QIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYH 437
             IP+S+  L NL+ L     ++  +    + +L     L S+ L+  +  G  P  + +
Sbjct: 206 GSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNL---LNLQSLVLTENLLEGDIPAEIGN 262

Query: 438 QHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFN 497
              L  + L    L+G+ P  L  N   L+ L +  N L  S    +    +L  L +  
Sbjct: 263 CSSLVQLELYDNQLTGKIPAEL-GNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSE 321

Query: 498 NFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIP--- 554
           N   G I  EIG +L  L  L L  N F G  P S  +++ L  L +  N ++GE+P   
Sbjct: 322 NHLVGPISEEIG-FLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADL 380

Query: 555 ------------ERMATG--------CFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLD 594
                       + + TG        C  L++L LS+N++ G I    F   NL  + + 
Sbjct: 381 GLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEI-PRGFGRMNLTFISIG 439

Query: 595 GNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEF 654
            N+F GEIP+ +  C  L  L ++DN+L G +   +G L  L+ + +  N+L GPIP E 
Sbjct: 440 RNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREI 499

Query: 655 CQRDSLKILDLSNNSIFGTLPSCFSPASIEQ-VHLSKNKIEGRLESIIHDNPHLVTLDLS 713
                L IL L +N   G +P   S  ++ Q + +  N +EG +   + D   L  LDLS
Sbjct: 500 GNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLS 559

Query: 714 YNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCL 773
            N   G IP    +L  L YL L  N   G IP  L  L  +   D+S N L+G IP   
Sbjct: 560 NNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIP--- 616

Query: 774 VNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRI 833
                     GE+  +    +    + +  L G     +GK E VQ    + +  + G I
Sbjct: 617 ----------GELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLS-NNLFSGSI 665

Query: 834 LTSMSG------IDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIE 886
             S+        +D S N L+G IP ++   +  I +LNLS N+ +G IP +F N+  + 
Sbjct: 666 PRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLV 725

Query: 887 SLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCG- 945
           SLDLS N L G+IP  L  L+TL+  K+A NNL G +P+   F         GN  LCG 
Sbjct: 726 SLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCGS 785

Query: 946 -QPLSKSC 952
            +PL K C
Sbjct: 786 KKPL-KPC 792

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  235 bits (599), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 230/782 (29%), Positives = 345/782 (44%), Gaps = 144/782 (18%)

Query: 281 RDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLT 340
           R  +P  ++++ +L+ L  + NQ +G I P +  L  L+ L +  N L G LP  L+ L 
Sbjct: 78  RGQIPKEISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGLLPRLLSELP 137

Query: 341 SLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFF-QIPISLEPLFNLSKL----QT 395
            L  LD+S N  + ++  S  + L ++  L +SNN    +IP  +  L NLS L     +
Sbjct: 138 QLLYLDLSDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGLNS 197

Query: 396 FNGEIN------------AQTESHYDSLTPK-----FQLTSISLSGYVDGGTFPEFLYHQ 438
           F+G+I             A     ++   PK       L  + LS      + P+     
Sbjct: 198 FSGQIPSEIGNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSFGEL 257

Query: 439 HDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIH------------- 485
           H+L+ +NL    L G  P  L  N  +L++L+L+ NSL G   + +              
Sbjct: 258 HNLSILNLVSAELIGLIPPEL-GNCKSLKSLMLSFNSLSGPLPLELSEIPLLTFSAERNQ 316

Query: 486 ----------SHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFAD 535
                       + L +L + NN F G IP EI    P L  L+L+ N  +GSIP     
Sbjct: 317 LSGSLPSWMGKWKVLDSLLLANNRFSGEIPHEI-EDCPMLKHLSLASNLLSGSIPRELCG 375

Query: 536 MKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDG 595
              LE +D+S N L+G I E +  GC SL  L L+NN++ G I  + + L  LM L LD 
Sbjct: 376 SGSLEAIDLSGNLLSGTI-EEVFDGCSSLGELLLTNNQINGSIPEDLWKLP-LMALDLDS 433

Query: 596 NNFIGEIPESLSK------------------------CYMLRGLYLSDNHLFGKIPRWLG 631
           NNF GEIP+SL K                           L+ L LSDN L G+IPR +G
Sbjct: 434 NNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIG 493

Query: 632 NLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSP-ASIEQVHLSK 690
            L +L  + +  N  +G IP+E     SL  LDL +N++ G +P   +  A ++ + LS 
Sbjct: 494 KLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSY 553

Query: 691 NKIEGRLESIIHDNPHLVTL------------DLSYNSLHGSIPNRIDRLPQLNYLLLAH 738
           N + G + S      H + +            DLSYN L G IP  +     L  + L++
Sbjct: 554 NNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSN 613

Query: 739 NYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASV 798
           N++ GEIP  L +L  + ++DLS N L+G IP  + N+   +G +               
Sbjct: 614 NHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLN--------------- 658

Query: 799 YRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYL 858
             +  L G      G                   +L S+  ++L+ NKL G +P  +G L
Sbjct: 659 LANNQLNGHIPESFG-------------------LLGSLVKLNLTKNKLDGPVPASLGNL 699

Query: 859 TRIHALNLSHNNL------------------------TGTIPTTFSNLKQIESLDLSYNL 894
             +  ++LS NNL                        TG IP+   NL Q+E LD+S NL
Sbjct: 700 KELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENL 759

Query: 895 LHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGQPLSKSCND 954
           L G+IP ++  L  LE   +A NNL G++P         +    GN  LCG+ +   C  
Sbjct: 760 LSGEIPTKICGLPNLEFLNLAKNNLRGEVPSDGVCQDPSKALLSGNKELCGRVVGSDCKI 819

Query: 955 NG 956
            G
Sbjct: 820 EG 821

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  234 bits (597), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 217/709 (30%), Positives = 336/709 (47%), Gaps = 37/709 (5%)

Query: 300  SSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSS 359
            SS  L+G +SP +  LV L++L +  N L G +P  + N +SL +L ++ NQ    I   
Sbjct: 81   SSMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVE 140

Query: 360  SLMHLTSIEELILSNNHFF-QIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLT 418
             +  L S+E LI+ NN     +P+ +  L +LS+L T++  I+ Q      +L    +LT
Sbjct: 141  -IGKLVSLENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLK---RLT 196

Query: 419  SISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFG 478
            S      +  G+ P  +     L  + L+   LSGE P  +      L  ++L  N   G
Sbjct: 197  SFRAGQNMISGSLPSEIGGCESLVMLGLAQNQLSGELPKEI-GMLKKLSQVILWENEFSG 255

Query: 479  SFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKM 538
                 I +   L TL ++ N   G IP E+G  L  L  L L RN  NG+IP    ++  
Sbjct: 256  FIPREISNCTSLETLALYKNQLVGPIPKELGD-LQSLEFLYLYRNGLNGTIPREIGNLSY 314

Query: 539  LERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNF 598
               +D S N LTGEIP  +      LE+L L  N+L G I  E   L NL  L L  N  
Sbjct: 315  AIEIDFSENALTGEIPLELGN-IEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINAL 373

Query: 599  IGEIPESLSKCYMLRGLY---LSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFC 655
             G IP        LRGL+   L  N L G IP  LG    L  + M +N+L G IP   C
Sbjct: 374  TGPIPLGFQ---YLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLC 430

Query: 656  QRDSLKILDLSNNSIFGTLPSCFSPA-SIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSY 714
               ++ IL+L  N++ G +P+  +   ++ Q+ L++N + GR  S +    ++  ++L  
Sbjct: 431  LHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQ 490

Query: 715  NSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLV 774
            N   GSIP  +     L  L LA N   GE+P ++  L ++  +++S N L+G +P  + 
Sbjct: 491  NRFRGSIPREVGNCSALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIF 550

Query: 775  NTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRI- 833
            N  +       +    + C   S      LP +    + + E ++ +  N+S      + 
Sbjct: 551  NCKM-------LQRLDMCCNNFS----GTLPSEVGS-LYQLELLKLSNNNLSGTIPVALG 598

Query: 834  -LTSMSGIDLSCNKLTGEIPTQIGYLTRIH-ALNLSHNNLTGTIPTTFSNLKQIESLDLS 891
             L+ ++ + +  N   G IP ++G LT +  ALNLS+N LTG IP   SNL  +E L L+
Sbjct: 599  NLSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLN 658

Query: 892  YNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGQPLSKS 951
             N L G+IP     L++L  +  +YN+L+G IP     S     S+ GN  LCG PL++ 
Sbjct: 659  NNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIPLLRNISM---SSFIGNEGLCGPPLNQC 715

Query: 952  CNDNGLTTVTPEASTENEGDSLIDTDSFLITFTVSYGIVIIGIIGVLYI 1000
                      P  ST   G  +  +    IT  V  G+ ++ I  ++Y+
Sbjct: 716  IQTQ---PFAPSQSTGKPG-GMRSSKIIAITAAVIGGVSLMLIALIVYL 760

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  231 bits (588), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 197/663 (29%), Positives = 294/663 (44%), Gaps = 116/663 (17%)

Query: 429  GTFPEFLYHQH-DLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFG---SFRMPI 484
            GT PE  + ++ +L S+ LS+ N +G+ PN L  ++  L+TL L+ N++ G      +P+
Sbjct: 141  GTLPENFFSKYSNLISITLSYNNFTGKLPNDLFLSSKKLQTLDLSYNNITGPISGLTIPL 200

Query: 485  HSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDI 544
             S   +  LD   N   G+I   +      L  LNLS N F+G IP SF ++K+L+ LD+
Sbjct: 201  SSCVSMTYLDFSGNSISGYISDSL-INCTNLKSLNLSYNNFDGQIPKSFGELKLLQSLDL 259

Query: 545  SNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPE 604
            S+N+LTG IP  +   C SL+                         L+L  NNF G IPE
Sbjct: 260  SHNRLTGWIPPEIGDTCRSLQ------------------------NLRLSYNNFTGVIPE 295

Query: 605  SLSKCYMLRGLYLSDNHLFGKIPRW-LGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKIL 663
            SLS C  L+ L LS+N++ G  P   L +  +LQ +++ NN + G  P       SL+I 
Sbjct: 296  SLSSCSWLQSLDLSNNNISGPFPNTILRSFGSLQILLLSNNLISGDFPTSISACKSLRIA 355

Query: 664  DLSNNSIFGTLPS--CFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSI 721
            D S+N   G +P   C   AS+E++ L  N + G +   I     L T+DLS N L+G+I
Sbjct: 356  DFSSNRFSGVIPPDLCPGAASLEELRLPDNLVTGEIPPAISQCSELRTIDLSLNYLNGTI 415

Query: 722  PNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ------------------------------ 751
            P  I  L +L   +  +N I GEIP ++ +                              
Sbjct: 416  PPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIPPEFFNCSNIEW 475

Query: 752  ------------------LKEVRLIDLSHNNLSGRIPP------CLVNTSLNEGYHGEVA 787
                              L  + ++ L +NN +G IPP       LV   LN  +     
Sbjct: 476  VSFTSNRLTGEVPKDFGILSRLAVLQLGNNNFTGEIPPELGKCTTLVWLDLNTNHLTGEI 535

Query: 788  PTSIWCRRASVYRSACLPGQS--------SPPMGKEETVQFT--------------TKNM 825
            P  +  +  S   S  L G +        +   G    V+F+              + + 
Sbjct: 536  PPRLGRQPGSKALSGLLSGNTMAFVRNVGNSCKGVGGLVEFSGIRPERLLQIPSLKSCDF 595

Query: 826  SYYYQGRILT------SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTF 879
            +  Y G IL+      ++  +DLS N+L G+IP +IG +  +  L LSHN L+G IP T 
Sbjct: 596  TRMYSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIALQVLELSHNQLSGEIPFTI 655

Query: 880  SNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEG 939
              LK +   D S N L G+IP     L+ L    ++ N L+G IP R Q ST     Y  
Sbjct: 656  GQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNELTGPIPQRGQLSTLPATQYAN 715

Query: 940  NPFLCGQPLSKSCN-DNGLTTVTPEASTENEGDSLID-TDSFLITFTVSYGIVIIGIIGV 997
            NP LCG PL +  N +N L   T E      G       +S ++   +S   V I I+  
Sbjct: 716  NPGLCGVPLPECKNGNNQLPAGTEEGKRAKHGTRAASWANSIVLGVLISAASVCILIVWA 775

Query: 998  LYI 1000
            + +
Sbjct: 776  IAV 778

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  228 bits (582), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 208/650 (32%), Positives = 307/650 (47%), Gaps = 32/650 (4%)

Query: 304 LTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMH 363
           L+G +SP +C+L  LRKL +  N + G +P  L+   SL VLD+  N+    +    L  
Sbjct: 79  LSGTLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRF-HGVIPIQLTM 137

Query: 364 LTSIEELILSNNHFF-QIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISL 422
           + ++++L L  N+ F  IP     + NLS LQ      N  T     S+    QL  I  
Sbjct: 138 IITLKKLYLCENYLFGSIP---RQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIRA 194

Query: 423 SGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRM 482
                 G  P  +     L  + L+   L G  P  L E   NL  L+L  N L G    
Sbjct: 195 GRNGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQL-EKLQNLTDLILWQNRLSGEIPP 253

Query: 483 PIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERL 542
            + +  +L  L +  N+F G IP EIG  L  +  L L  N   G IP    ++     +
Sbjct: 254 SVGNISRLEVLALHENYFTGSIPREIGK-LTKMKRLYLYTNQLTGEIPREIGNLIDAAEI 312

Query: 543 DISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEI 602
           D S NQLTG IP+       +L++L L  N L G I  E   LT L  L L  N   G I
Sbjct: 313 DFSENQLTGFIPKEFGH-ILNLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTI 371

Query: 603 PESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKI 662
           P+ L     L  L L DN L GKIP  +G       + M  N+L GPIP  FC+  +L +
Sbjct: 372 PQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLIL 431

Query: 663 LDLSNNSIFGTLPSCFSPA-SIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSI 721
           L L +N + G +P       S+ ++ L  N++ G L   + +  +L  L+L  N L G+I
Sbjct: 432 LSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNI 491

Query: 722 PNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEG 781
              + +L  L  L LA+N   GEIP ++  L ++   ++S N L+G IP  L       G
Sbjct: 492 SADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKEL-------G 544

Query: 782 YHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRI------LT 835
               +    +   + S Y +  L GQ    +   E ++ +   ++    G I      LT
Sbjct: 545 SCVTIQRLDLSGNKFSGYIAQEL-GQ----LVYLEILRLSDNRLT----GEIPHSFGDLT 595

Query: 836 SMSGIDLSCNKLTGEIPTQIGYLTRIH-ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL 894
            +  + L  N L+  IP ++G LT +  +LN+SHNNL+GTIP +  NL+ +E L L+ N 
Sbjct: 596 RLMELQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNK 655

Query: 895 LHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLC 944
           L G+IP  +  L +L +  ++ NNL G +PD A F   +  ++ GN  LC
Sbjct: 656 LSGEIPASIGNLMSLLICNISNNNLVGTVPDTAVFQRMDSSNFAGNHGLC 705

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1

 Score =  225 bits (573), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 205/655 (31%), Positives = 290/655 (44%), Gaps = 92/655 (14%)

Query: 416 QLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNS 475
            +T ISL      GT    + + H L+ ++LS+  LSG  P         L  L L+ NS
Sbjct: 91  HVTVISLPSRGLSGTLASSVQNIHRLSRLDLSYNRLSGPLPPGFFSTLDQLMILNLSYNS 150

Query: 476 LFG------SFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPG---LMELNLSRNAFN 526
             G      +F    +    + TLD+ +N  +G I +    YL G   L+  N+S N+F 
Sbjct: 151 FNGELPLEQAFGNESNRFFSIQTLDLSSNLLEGEI-LRSSVYLQGTINLISFNVSNNSFT 209

Query: 527 GSIPSSFA-DMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNL 585
           G IPS        L +LD S N  +G I + +   C  L +L    N L G I SE +NL
Sbjct: 210 GPIPSFMCRSSPQLSKLDFSYNDFSGHISQELGR-CLRLTVLQAGFNNLSGVIPSEIYNL 268

Query: 586 TNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNN 645
           + L  L L  N   G+I  ++++   L  L L  NHL G+IP  +GNL +L+ + +  NN
Sbjct: 269 SELEQLFLPANQLTGKIDNNITRLRKLTSLALYSNHLEGEIPMDIGNLSSLRSLQLHINN 328

Query: 646 LEGPIPI-------------------------EFCQRDSLKILDLSNNSIFGTLP-SCFS 679
           + G +P+                         EF Q  SLK+LDL NNS  G LP   FS
Sbjct: 329 INGTVPLSLANCTKLVKLNLRVNQLGGGLTELEFSQLQSLKVLDLGNNSFTGALPDKIFS 388

Query: 680 PASIEQVHLSKNKIEGRLE--------------------------SIIHDNPHLVTLDLS 713
             S+  +  + NK+ G +                           SI+     L TL L+
Sbjct: 389 CKSLTAIRFAGNKLTGEISPQVLELESLSFMGLSDNKLTNITGALSILQGCRKLSTLILA 448

Query: 714 YNSLHGSIPNRIDRL-----PQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGR 768
            N    ++P++ D L     P+L    +    ++GEIP  L  L +V ++DLS N   G 
Sbjct: 449 KNFYDETVPSKEDFLSPDGFPKLRIFGVGACRLRGEIPAWLINLNKVEVMDLSMNRFVGS 508

Query: 769 IP------PCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTT 822
           IP      P L    L++       P  ++  RA + +          P+         T
Sbjct: 509 IPGWLGTLPDLFYLDLSDNLLTGELPKELFQLRALMSQKITENNYLELPIFLNPNN--VT 566

Query: 823 KNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNL 882
            N  Y    ++ +    I +  N LTG IP ++G L  +H L L  NNL+G+IP   SNL
Sbjct: 567 TNQQY---NKLYSFPPTIYIRRNNLTGSIPVEVGQLKVLHILELLGNNLSGSIPDELSNL 623

Query: 883 KQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPF 942
             +E LDLS N L G IP  L  LN L  F VA N+L G IP   QF TF + ++EGNP 
Sbjct: 624 TNLERLDLSNNNLSGSIPWSLTNLNFLSYFNVANNSLEGPIPSEGQFDTFPKANFEGNPL 683

Query: 943 LCGQPLSKSCNDNGLTTVTPEASTENEGDSLIDTDSFLITFTVSYGIVIIGIIGV 997
           LCG  L  SC         P  + EN  D L  T  FL+   + Y +  + I+ V
Sbjct: 684 LCGGVLLTSCK--------PTRAKEN--DELNRT--FLMGIAIGYFLSFVSILVV 726

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1037
255581263	912	serine-threonine protein kinase, plant-t	0.711	0.809	0.523	0.0
224142481	781	predicted protein [Populus trichocarpa]	0.702	0.932	0.479	1e-178
224073436	1014	predicted protein [Populus trichocarpa]	0.859	0.878	0.388	1e-170
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.875	0.620	0.402	1e-169
224098008	1097	predicted protein [Populus trichocarpa]	0.927	0.876	0.387	1e-167
359482725	1144	PREDICTED: leucine-rich repeat receptor	0.957	0.868	0.393	1e-167
359482735	1097	PREDICTED: receptor-like protein 12-like	0.899	0.850	0.390	1e-163
224073382	1309	predicted protein [Populus trichocarpa]	0.960	0.760	0.370	1e-162
359482749	1067	PREDICTED: leucine-rich repeat receptor	0.899	0.874	0.385	1e-161
224123984	1016	predicted protein [Populus trichocarpa]	0.855	0.873	0.391	1e-161

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/766 (52%), Positives = 502/766 (65%), Gaps = 28/766 (3%)

Query: 259  ILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNIS--PGLCELV 316
            I  Q L    +L+ LY+   +L +     +  MTSL+VL  S   LTG +    GLCEL+
Sbjct: 168  IQAQDLPNFENLEELYLDKIELENSFLQTVGVMTSLKVLSLSGCGLTGALPNVQGLCELI 227

Query: 317  LLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNH 376
             LR L + +N+  G LP CL+NLTSL++LD+S NQ   +IS+S L  L S+ +L +SNNH
Sbjct: 228  HLRVLDVSSNEFHGILPWCLSNLTSLQLLDLSSNQFVGDISNSPLKILKSLVDLDVSNNH 287

Query: 377  FFQIPISLEPLFNLSKLQTFNGEINA---QTESHYDSLTPKFQLTSISLSGYVDGGTFPE 433
            F Q+P SL P FN S L+   G+ NA   + E H     P+FQL SI  SGY   GTFP 
Sbjct: 288  F-QVPFSLGPFFNHSNLKHIRGQNNAIYLEAELHS---APRFQLISIIFSGYGICGTFPN 343

Query: 434  FLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATL 493
            FLYHQ++L  V+LSHL+L GEFPNWLL NNT LE L L NNSL G  ++P+H H  L  L
Sbjct: 344  FLYHQNNLQFVDLSHLSLKGEFPNWLLTNNTRLEILDLVNNSLSGHLQLPLHPHVNLLAL 403

Query: 494  DVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEI 553
            D+ NN    HIP+EIGT+LP L  LN+S N F+GSIPSSF +M  L  LD+SNNQL+G I
Sbjct: 404  DISNNHVHDHIPLEIGTFLPKLELLNMSSNGFDGSIPSSFGNMNSLRILDLSNNQLSGSI 463

Query: 554  PERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLR 613
            PE +ATGCFSL  L LSNN LQG +FS++FNLTNL  L+LD N+F G IP+SLSK   L 
Sbjct: 464  PEHLATGCFSLNTLILSNNSLQGQMFSKQFNLTNLWWLELDKNHFSGRIPKSLSKS-ALS 522

Query: 614  GLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGT 673
             + LSDNHL G IP W+GNL  LQ +I+ NN L+GPIP+EFCQ   L++LDL+NNS+ G 
Sbjct: 523  IMDLSDNHLSGMIPGWIGNLSYLQNLILSNNRLKGPIPVEFCQLHYLEVLDLANNSVSGI 582

Query: 674  LPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNY 733
            LPSC SP+SI  VHLS+N IEG   +    +  LVTLDLS N + G IP  I  +  L  
Sbjct: 583  LPSCLSPSSIIHVHLSQNMIEGPWTNAFSGSHFLVTLDLSSNRITGRIPTLIGGINALRI 642

Query: 734  LLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWC 793
            L L  N   GEIP Q+C L ++ LI L+ NNLSG IP CL    L++     +AP     
Sbjct: 643  LNLKSNRFDGEIPAQICGLYQLSLIVLADNNLSGSIPSCL---QLDQS--DSLAPDVP-- 695

Query: 794  RRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPT 853
               +      LP +   PM       FTTK  SY YQG+IL+ +SGID SCNKLTGEIP 
Sbjct: 696  PVPNPLNPYYLPVR---PM------YFTTKRRSYSYQGKILSYISGIDFSCNKLTGEIPP 746

Query: 854  QIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK 913
            ++G  + I++LNLS+N  TG IP+TFSNLKQIESLDLSYN L+G IP QL+ L  L  F 
Sbjct: 747  EMGNHSAIYSLNLSYNRFTGPIPSTFSNLKQIESLDLSYNNLNGDIPSQLLELKFLSYFS 806

Query: 914  VAYNNLSGKIPDR-AQFSTFEEDSYEGNPFLCGQPLSKSCNDNGLTTVTPEASTENEGDS 972
            VA+NNL GK P R  QF+TFE  SYEGNP LCG PL KSC +   ++  P AS  +E  +
Sbjct: 807  VAHNNLFGKTPKRTGQFATFEVSSYEGNPNLCGLPLPKSCTEREASS-APRASAMDEESN 865

Query: 973  LIDTDSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTS 1018
             +D ++F  +F VSY  VIIG+  VLYINP WRR WF  V++C++S
Sbjct: 866  FLDMNTFYGSFIVSYTFVIIGMFLVLYINPQWRRAWFDFVDICISS 911

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  632 bits (1630), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 380/792 (47%), Positives = 498/792 (62%), Gaps = 64/792 (8%)

Query: 266  QLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNIS-PGLCELVLLRKLYID 324
            +L  L+ L +  N + D     L  ++SL+ L   +NQL G+I   GLCEL  L++L I 
Sbjct: 26   RLNKLEILELSFNKINDSTLSFLEGLSSLKHLNLDNNQLKGSIDMKGLCELKQLQELDIS 85

Query: 325  NNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISL 384
             NDL G LP CL NL +L+VLD+S+N  + NIS S +  LTSI +L LS+NHF QIPISL
Sbjct: 86   YNDLNG-LPSCLTNLNNLQVLDISFNNFSGNISLSRIGSLTSIRDLKLSDNHF-QIPISL 143

Query: 385  EPLFNLSKLQTFNGEINAQTESH--YDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLN 442
             P FNLS L+  NG+ N   ES     +L P+FQL  +SL+ +  GGTFP+FLY+QHDL 
Sbjct: 144  GPFFNLSNLKNLNGDHNEIYESTELVHNLIPRFQLQRLSLACHGFGGTFPKFLYYQHDLQ 203

Query: 443  SVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQG 502
             V+LSH+ + GEFP+WLL+NNT LE L L N+SL GS ++P  SH  L+ LD+  N  Q 
Sbjct: 204  FVDLSHIKIIGEFPSWLLQNNTKLEALYLVNSSLSGSLQLPNDSHVNLSRLDISRNHIQN 263

Query: 503  HIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCF 562
             IP +IG Y P L  LNLSRN F+GSIPSS ++M  L  LD+SNN L+G IPE++  GC 
Sbjct: 264  QIPTKIGAYFPWLEFLNLSRNYFSGSIPSSISNMSSLGVLDLSNNGLSGNIPEQLVEGCL 323

Query: 563  SLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHL 622
            SL  L LSNN L+G  F   FNL  L  L L GN   G +P SLS    L  L +S N+L
Sbjct: 324  SLRGLVLSNNHLKGQFFWRSFNLAYLTDLILSGNQLTGILPNSLSNGSRLEALDVSLNNL 383

Query: 623  FGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCF-SPA 681
             GKIPRW+G + +LQY                        LDLS N+++G+LPS F S  
Sbjct: 384  SGKIPRWIGYMSSLQY------------------------LDLSENNLYGSLPSSFCSSR 419

Query: 682  SIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYI 741
            ++ +V+LSKNK+EG L   +     L  LDLS+N   G IP  I  L +L++LLL +N +
Sbjct: 420  TMTEVYLSKNKLEGSLIGALDGCLSLNRLDLSHNYFGGGIPESIGSLLELSFLLLGYNNL 479

Query: 742  KGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRS 801
            +G+IP QLC+L+++ LIDLSHN+L G I PCL              PTS W R      +
Sbjct: 480  EGKIPSQLCKLEKLSLIDLSHNHLFGHILPCL-------------QPTSKWQRERETSLN 526

Query: 802  AC----------------LPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCN 845
                              +P    P M K  +V+FTTK++SY ++G IL  +SGIDLSCN
Sbjct: 527  PSGNSLGRENRGPQIVFPVPAVEDPSMNK--SVEFTTKSISYSFKGIILKYISGIDLSCN 584

Query: 846  KLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIV 905
             LTGEIP ++G L+ I  LNLSHN+LTG IP TFSNLK+IESLDLSYN L+G+IP QL+ 
Sbjct: 585  NLTGEIPVELGNLSNIQVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNNLNGEIPRQLLD 644

Query: 906  LNTLEVFKVAYNNLSGKIPDR-AQFSTFEEDSYEGNPFLCGQPLSKSCNDNGLTTVTPEA 964
            LN L  F VA+NNLSGK P+  AQFSTF +  YEGNP LCG PL+++C      +  P +
Sbjct: 645  LNFLSAFSVAHNNLSGKTPEMVAQFSTFNKSCYEGNPLLCGPPLARNCTRALPPSPLPRS 704

Query: 965  ST-ENEGDSLIDTDSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTSCYYFV 1023
             T + E + +ID ++F++TF+V+Y +V++ I  VLYINP WRR WFY +   + +CYYF+
Sbjct: 705  QTHKKEENGVIDMEAFIVTFSVAYIMVLLTIGSVLYINPRWRRAWFYFIGESINNCYYFL 764

Query: 1024 ADNL-IPRRFYR 1034
             DNL +P RF R
Sbjct: 765  VDNLPVPARFRR 776

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa]

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 413/1063 (38%), Positives = 569/1063 (53%), Gaps = 172/1063 (16%)

Query: 1    MNASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNN--SIFSSL 58
            +NASLF PF++L+SL+L +N + GC++NE  E LS  +NL+ L L+DN FNN  SI S +
Sbjct: 88   LNASLFLPFKELQSLELRFNGLVGCLENEGFEVLS--SNLRNLDLSDNRFNNDKSILSCM 145

Query: 59   GGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLY 118
             GLS+L+ L L+ N L GS      + L  L+ LD++ N   + ++    RGL  L +L 
Sbjct: 146  TGLSTLKSLDLSGNGLTGSGFEIISSHLEKLDNLDLSYNIFNDSIL-SHLRGLSYLKSLN 204

Query: 119  LGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLH 178
            L G+ +           +GS                T VN    N + LEEL LD + L 
Sbjct: 205  LSGNML-----------LGS----------------TTVNGTFFNSSTLEELYLDRTSLP 237

Query: 179  VSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVG 238
            ++  LQ+I +   LK LS+ +C L G L  Q + + KNL        Q+D++ N L   G
Sbjct: 238  IN-FLQNIGALPDLKVLSVAECDLHGTLPAQGWCELKNLR-------QLDLSGNNL---G 286

Query: 239  ESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLY 298
             S+P                                            CL N++SLQ+L 
Sbjct: 287  GSLPD-------------------------------------------CLGNLSSLQLLD 303

Query: 299  ASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISS 358
             S NQ TGNI+ G                                               
Sbjct: 304  VSENQFTGNIASG----------------------------------------------- 316

Query: 359  SSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEIN--AQTESHYDSLTPKFQ 416
              L +LTS+E L LSNN  F++PIS++P  N S L+ F+ E N      + +D+L PKFQ
Sbjct: 317  -PLTNLTSLEFLSLSNN-LFEVPISMKPFMNHSSLKFFSSENNKLVTEPAAFDNLIPKFQ 374

Query: 417  LTSISLSGYVDG--GTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANN 474
            L    LS   +      P+FLY+Q+D+  ++LSH N++  FP+WLL+NNT LE L L+NN
Sbjct: 375  LVFFRLSKTTEALNVKIPDFLYYQYDIRVLDLSHNNITAMFPSWLLKNNTRLEQLYLSNN 434

Query: 475  SLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFA 534
            S  G+ ++  H +  +  LD+ NN   G IP +I    P +  L ++ N F G IPS   
Sbjct: 435  SFVGTLQLQDHPYLNMTELDISNNNMNGQIPKDICLIFPNMWSLRMANNGFTGCIPSCLG 494

Query: 535  DMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLD 594
            ++  L+ LD+SNNQL+    E++ T  F    L LSNN L G + +  FN + L  L L 
Sbjct: 495  NISSLKILDLSNNQLSIVKLEQLTTIWF----LKLSNNNLGGQLPTSVFNSSTLEYLYLH 550

Query: 595  GNNFIGEIPESLSKCY-MLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIE 653
            GNNF G+I + L   + M   L LSDN   G +PRWL N   L  I +  N  +GPI  +
Sbjct: 551  GNNFWGQISDFLLYGWKMWSTLDLSDNQFSGMLPRWLVNSTGLIAIDLSKNYFKGPILRD 610

Query: 654  FCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLS 713
            FC+ + L+ LDLS N++ G +PSCFSP  I  VHLS+N++ G L    ++N  LVT+DL 
Sbjct: 611  FCKLNQLEYLDLSENNLSGYIPSCFSPPQITHVHLSENRLSGPLTYGFYNNSSLVTMDLR 670

Query: 714  YNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCL 773
             N+  GS PN I  L  L+ LLL  N+  GE+PVQLC L+++ ++D+S N LSG +P CL
Sbjct: 671  DNNFTGSFPNWIGNLSSLSVLLLRANHFDGELPVQLCLLEQLSILDVSQNQLSGPLPSCL 730

Query: 774  VNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGK--------------EETVQ 819
             N +  E     +A         S+ ++        PP+ +              EE ++
Sbjct: 731  GNLTFKESSQKTLADLGADVLSRSIEKAYY--ETMGPPLVESMYNLRKGFLLNFTEEVIE 788

Query: 820  FTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTF 879
            FTTKNM Y Y+G+ L+ MSGIDLS N   G IP + G L++I +LNLSHNNLTG+IP TF
Sbjct: 789  FTTKNMYYRYKGKTLSYMSGIDLSNNNFVGAIPPEFGDLSKILSLNLSHNNLTGSIPATF 848

Query: 880  SNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA-QFSTFEEDSYE 938
            SNLKQIESLDLSYN L+G IPPQL  + TLEVF VA+NNLSG  P+R  QF TF+E  YE
Sbjct: 849  SNLKQIESLDLSYNNLNGVIPPQLTDITTLEVFSVAHNNLSGNTPERKYQFGTFDESCYE 908

Query: 939  GNPFLCGQPLSKSCNDNGLTT---------VTPEASTENEGDSLIDTDSFLITFTVSYGI 989
            GNPFLCG PL  +C++  + +           P    E   D  ID + F I F V Y +
Sbjct: 909  GNPFLCGPPLRNNCSEEAVPSQPVPSQPVPSQPVPYDEQGDDGFIDMEFFYINFGVCYTV 968

Query: 990  VIIGIIGVLYINPYWRRRWFYLVEVCMTSCYYFVADNLIPRRF 1032
            V++ I+ VLYI+PYWRRRW Y +E C+ +CYYFV  +   R+F
Sbjct: 969  VVMIIVVVLYIDPYWRRRWSYFIEDCIDTCYYFVVASF--RKF 1009

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  602 bits (1553), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 417/1037 (40%), Positives = 567/1037 (54%), Gaps = 129/1037 (12%)

Query: 1    MNASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGG 60
            +NASLF PF +L+ L+LS N +     ++  ER  +L NL+ L L++N  + SI +SL  
Sbjct: 534  LNASLFIPFVELKILNLSTNMLVTLGDDDGSERPFKLNNLELLDLSNNTLDISILASLTE 593

Query: 61   LSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLG 120
            LSSL+ LSL  N L GS  I+ L +L NLEELD++ N +E+ +     + LRKL  L+L 
Sbjct: 594  LSSLKSLSLGTNILEGS--IQELAALHNLEELDLSKNDLESFITTTGLKSLRKLRVLHLE 651

Query: 121  GSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVS 180
             +          L+S+G L  LK LYL   K +G+V  ++L+N  NLE L L  +++  S
Sbjct: 652  TNDF----NISTLKSLGRLSLLKELYLGGNKLEGSVTLRELNNLRNLEVLDLSSTNIS-S 706

Query: 181  QLLQSIASFTSLKHLSMQDCVLKGALHG-QDFLKFKNLEYLDMGWVQVDVNTNFLQIVGE 239
             +LQ +   TSLK LS++   + G+    Q   K KNL+ LD+                 
Sbjct: 707  SILQIVEVMTSLKALSLRSNGINGSQTALQGLCKLKNLQELDLS---------------- 750

Query: 240  SMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYA 299
                                                 DN     +  CL N+TSL+ L  
Sbjct: 751  -------------------------------------DNGFEGSVSPCLGNLTSLRALDL 773

Query: 300  SSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYN--QLTENIS 357
            S N+ +GN+   L                        A L  L  L +S+N  Q    IS
Sbjct: 774  SKNRFSGNLDSSL-----------------------FAGLMKLEFLSLSHNVFQTFPPIS 810

Query: 358  SSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQL 417
            S +      + +LI  NN                             ES   +  P FQL
Sbjct: 811  SFAKHSKLEVLDLICGNNTLL-------------------------LESEDQTWVPSFQL 845

Query: 418  TSISLSGYV-DGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSL 476
                LS  +   G+ P FL++QHDL  V+LS+ +L  +FP WL++NNT LE L L NNSL
Sbjct: 846  KVFRLSSCILKTGSIPSFLHYQHDLRVVDLSNSSLEEDFPTWLMKNNTRLEELNLKNNSL 905

Query: 477  FGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADM 536
             G F +P   +   + +D+ NN  QG +P  I   LP LM LN+SRN+F GSIP SF  M
Sbjct: 906  TGYFHLPYRPNIFTSAIDISNNLLQGQMPSNISVSLPNLMFLNVSRNSFEGSIP-SFGGM 964

Query: 537  KMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGN 596
            + L  LD+SNN  TG IPE +A GC SLE L LS N L G +F    NL +L  L+LD N
Sbjct: 965  RKLLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSKNDLHGQMFPRVSNLPSLRHLELDDN 1024

Query: 597  NFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQ 656
            +F G+IP+ LS    L  LY+S N + GK+P W+GN+  L  ++MPNN+LEGPIP+EFC 
Sbjct: 1025 HFSGKIPD-LSNSSGLERLYVSHNSISGKLPGWIGNMSNLAALVMPNNSLEGPIPVEFCS 1083

Query: 657  RDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNS 716
             D+L++LDLSNN++ G+LPSCFSP+ +  VHL +N + G L      +  L TLD+  N+
Sbjct: 1084 LDALELLDLSNNNLSGSLPSCFSPSLLIHVHLQENHLTGPLTKAFTRSMDLATLDIRNNN 1143

Query: 717  LHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNT 776
            L G IP+ I     L+ LLL  N+ +G+IP QLCQL ++ ++DLS+N+LSG IP CL   
Sbjct: 1144 LSGGIPDWISMFSGLSILLLKGNHFQGKIPYQLCQLSKITILDLSYNSLSGHIPSCLNKI 1203

Query: 777  SLNEGYH-GEVAPTSIWCR---RASVYRSACLP-----GQSSPPMGKEETVQFTTKNMSY 827
                G+  G+ +  S +      + +Y S  +        S P    +   +FTTKN + 
Sbjct: 1204 QFRTGFRSGKFSIISYFPSPGFSSYLYHSQHIELSQVNVNSYPIAYDKAMAEFTTKNRTD 1263

Query: 828  YYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIES 887
            +Y+G  L SM+GIDLS NKLTG IP +IG L+++HALNLSHN LTG IP  FS LK IES
Sbjct: 1264 FYKGNFLYSMTGIDLSSNKLTGAIPPEIGNLSQVHALNLSHNILTGPIPAAFSGLKSIES 1323

Query: 888  LDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD-RAQFSTFEEDSYEGNPFLCGQ 946
            LDLSYN L G IP +L  L  L VF VAYNNLSGKIP+  AQF TF E+SY GNP+LCG 
Sbjct: 1324 LDLSYNNLTGTIPGELTELTNLAVFSVAYNNLSGKIPEMTAQFGTFLENSYVGNPYLCGS 1383

Query: 947  PLSKSCNDNGLTTVTPEASTENEGDSLIDTDSFLITFTVSYGIVIIGIIGVLYINPYWRR 1006
             L K+C     +    EA  E     L D D F ++F  SY +V++G+  VLYIN  WR+
Sbjct: 1384 LLRKNC-----SRAEEEAEIEEGEKGLTDRDIFYVSFGASYVVVLLGVAAVLYINGGWRK 1438

Query: 1007 RWFYLVEVCMTSCYYFV 1023
            +WF++++V +T C  FV
Sbjct: 1439 KWFHVIDVLITCCCNFV 1455

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098008|ref|XP_002334579.1| predicted protein [Populus trichocarpa] gi|222873205|gb|EEF10336.1| predicted protein [Populus trichocarpa]

 Score =  597 bits (1539), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 414/1069 (38%), Positives = 583/1069 (54%), Gaps = 107/1069 (10%)

Query: 1    MNASLFTPFQQLESLDLSWNNIAGCVQNESLERLS-RLTNLKFLYLNDNHFNN--SIFSS 57
            +NASLF PF++L  LDL    + GC++NE  E LS +L+NL    L  N F N  SI S 
Sbjct: 94   LNASLFQPFKELRGLDLGGTGLVGCMENEGFEVLSSKLSNLD---LRVNKFTNDKSILSC 150

Query: 58   LGG-LSSLRHLSLADNRLN-GSIDIKGLNS-LSNLEELDMTGNAIENLVVPKDFRGLRKL 114
              G LS+L+ L L+ N L  GS  +K L+S L  LE L +  N   + + P    G   L
Sbjct: 151  FNGNLSTLKSLDLSFNGLTAGSGGLKVLSSRLKKLENLLLRENQYNDSIFPS-LTGFSSL 209

Query: 115  NTLYLGG-----SGIPRIDG----------------SKVLQSIGSLPSLKTLYLSHTKFK 153
             +LYL G     SG+  +                    +  S+    SLK+LYLS  +  
Sbjct: 210  KSLYLSGNQLTGSGLKDLSSRLKKLENLHLSEIQCNDSIFPSLTGFSSLKSLYLSGNQLT 269

Query: 154  GTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLK 213
            G+       +   LE L L  +++    +L  +   + LK L++   +L G+        
Sbjct: 270  GSGFEIISSHLGKLENLDLSHNNIFNDSILSHLRGLSHLKSLNLSGNMLLGST------T 323

Query: 214  FKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGL 273
               L  LD+           LQ +  S PSL  LSL +++L++ T  +    + +HL   
Sbjct: 324  INGLRNLDI-----------LQSL-RSWPSLKTLSLKDTNLSQGTFFNSSTLEELHLDNT 371

Query: 274  YIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNI-SPGLCELVLLRKLYIDNNDLRGSL 332
             +  N L++        + +L+VL  +   L G + + G CEL  L++L +  N+  G+L
Sbjct: 372  SLPINFLQN-----TGALPALKVLSVAECDLHGTLPAQGWCELKNLKQLDLARNNFGGAL 426

Query: 333  PLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSK 392
            P CL NL+SL++LDVS NQ T NI+   L  L S+E L LSNN  F++PIS++P  N S 
Sbjct: 427  PDCLGNLSSLQLLDVSDNQFTGNIAFGPLTKLISLEFLSLSNN-LFEVPISMKPFMNHSS 485

Query: 393  LQTFNGEIN--AQTESHYDSLTPKFQLTSISLSGYVDGGTFP----EFLYHQHDLNSVNL 446
            L+ F+ E N      + +D+L PKFQL    LS             +FLY+Q+DL +++L
Sbjct: 486  LKFFSSENNRLVTESAAFDNLIPKFQLVFFRLSSSPTSEALNVEILDFLYYQYDLRTLDL 545

Query: 447  SHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPV 506
            SH N+ G FP+WLL+NNT +E L L+ NS  G+ ++  H +  +  LD+ NN   G IP 
Sbjct: 546  SHNNIFGMFPSWLLKNNTRMEQLYLSENSFVGTLQLLDHPYPNMTELDISNNNINGQIPK 605

Query: 507  EIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEI 566
            +I    P L  L ++ N F G IPS   +   L  LD+SNNQL+    E++ T    +++
Sbjct: 606  DICLIFPNLWILRMADNGFTGYIPSCLGNFSSLSFLDLSNNQLSTVKLEQLTT----IQV 661

Query: 567  LALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPE-SLSKCYMLRGLYLSDNHLFGK 625
            L LSNN L G I +  FN +    L L GN F G+I +  L    +   L LS+N   G 
Sbjct: 662  LKLSNNSLGGQIPTSVFNSSISQYLYLGGNYFWGQISDFPLYGWKVWSVLDLSNNQFSGM 721

Query: 626  IPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQ 685
            +PR   N    + + +  N  +GPIP +FC+ D L+ LDLS+N + G +PSCF+P  I  
Sbjct: 722  LPRSFFNFTYDEVLDLSKNLFKGPIPRDFCKLDRLEFLDLSDNYLSGYMPSCFNPPQITH 781

Query: 686  VHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEI 745
            +HLSKN++ G L    +++  LVT+DL  NS  GSIPN I  L  L+ LLL  N   GE+
Sbjct: 782  IHLSKNRLSGPLTYGFYNSSSLVTMDLRDNSFIGSIPNWIGNLSSLSVLLLRANNFDGEL 841

Query: 746  PVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLP 805
             VQLC L+++ ++D+S N LSG +P CL N +L E                         
Sbjct: 842  AVQLCLLEQLSILDVSQNQLSGPLPSCLGNLTLKE------------------------- 876

Query: 806  GQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALN 865
                P   +   + F+         G++L+ M GIDLS N   G IP + G L++I +LN
Sbjct: 877  ---IPENARGSRIWFSV-------MGKVLSYMYGIDLSNNNFVGAIPPEFGNLSKILSLN 926

Query: 866  LSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD 925
            LSHNNLTG+IP TFSNLKQIESLDLSYN L+G IPPQL  + TLEVF VAYNNLSG+ P+
Sbjct: 927  LSHNNLTGSIPATFSNLKQIESLDLSYNNLNGAIPPQLTEITTLEVFSVAYNNLSGRTPE 986

Query: 926  RA-QFSTF-EEDSYEGNPFLCGQPLSKSCNDNGLTTVTPEASTENEGDSLIDTDSFLITF 983
            R  QF TF +E+ YEGNPFLCG PL  +C++  +  + P  + E   D  ID + F I+F
Sbjct: 987  RKYQFGTFDDENCYEGNPFLCGPPLRNNCSEEAV-PLQPVPNDEQGDDGFIDMEFFYISF 1045

Query: 984  TVSYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTSCYYFVADNLIPRRF 1032
             V Y +V++ I  VLYINPYWRRRW Y +E C+ +CYYFV  +   R+F
Sbjct: 1046 GVCYTVVVMTIAAVLYINPYWRRRWSYFIEDCINTCYYFVVASF--RKF 1092

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482725|ref|XP_003632817.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  596 bits (1536), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 418/1062 (39%), Positives = 594/1062 (55%), Gaps = 69/1062 (6%)

Query: 1    MNASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGG 60
            +N SLF PF++L  L+LS N+  G ++NE  E LS L  L+ L ++ N F+ S   SLG 
Sbjct: 108  LNVSLFLPFEELHHLNLSANSFDGFIENEGFEGLSSLKKLEILDISGNEFDKSALKSLGT 167

Query: 61   LSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLG 120
            ++SL+ L++    LNGS  I+ L SL NLE LD++ N +E+  + +DF  L  L  L L 
Sbjct: 168  ITSLKTLAICRMGLNGSFSIRELASLRNLEVLDLSYNDLESFQLLQDFASLSNLEVLDLS 227

Query: 121  GSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQK-----LHNFTNLEEL-ILDE 174
             + I  I    V  SI  + SLK+L L+     G + NQ      L +F    +L  L E
Sbjct: 228  ANSISGI----VPSSIRLMSSLKSLSLAENYLNGFLPNQDDWLHVLFSFVGFCQLNKLQE 283

Query: 175  SDLHVSQLLQSIA-----SFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDV 229
             D+  + L Q I      + TSL+ L +   +  G L         +LEY       +D+
Sbjct: 284  LDISYN-LFQGILPPCLNNLTSLRLLDLSSNLYFGNLSSPLLPNLTSLEY-------IDL 335

Query: 230  NTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLA 289
            N N  +         N  +L    L ++            L  L++ +N  R  L   ++
Sbjct: 336  NYNHFEGSFSFSSFANHSNLQVVKLGRNN-------NKFELGFLHLDNNQFRGTLSNVIS 388

Query: 290  NMTSLQVLYASSNQLTGNISP--GLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDV 347
             ++ L VL  S+N ++G I    G C+L  L++L I  N  +G LP CL NLTSLR+LD+
Sbjct: 389  RISRLWVLDVSNN-MSGEIPSWIGFCQLNKLQELDISYNLFQGILPPCLNNLTSLRLLDL 447

Query: 348  SYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTF----------- 396
            S N  + N+SS  L +LTS+E + LS N F +   S     N SKLQ             
Sbjct: 448  SANLFSGNLSSPLLPNLTSLEYINLSYNQF-EGSFSFSSFANHSKLQVVILGRYNNIFEE 506

Query: 397  -NGEINA-QTESHYD-SLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSG 453
              G+ N  + E+ Y     P FQL ++ LS     G    FL +Q  L  V+LSH NL+G
Sbjct: 507  VGGDNNKFEVETEYPVGWVPLFQLKALFLSSCKLTGDLLGFLQYQFRLVGVDLSHNNLTG 566

Query: 454  EFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLP 513
             FPNWLLENNT L++L+L NNSL G   +P+  + ++ +LD+ +N   G +   +   +P
Sbjct: 567  SFPNWLLENNTRLKSLVLRNNSLMGQL-LPLGRNTRIDSLDISHNQLDGQLQENVAHMIP 625

Query: 514  GLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNR 573
             ++ LNLS N F G +PSS A+++ L  LD+S N  +GE+P+++      LEIL LSNN+
Sbjct: 626  NIISLNLSNNGFEGILPSSIAELRALRSLDLSTNNFSGEVPKQLLAAK-DLEILKLSNNK 684

Query: 574  LQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNL 633
              G IFS  FNLT L  L L  N F G +   + + + L+ L +S+N++ G+IP  +GN+
Sbjct: 685  FHGEIFSRDFNLTWLEYLYLGNNQFTGTLSNVICRSFRLKVLDVSNNYMSGEIPSQIGNM 744

Query: 634  PTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKI 693
              L  +++ NNN +G +P E  Q   ++ LD+S N++ G+LPS  S   +E +HL  N  
Sbjct: 745  TDLTTLVLGNNNFKGKLPPEISQLQRMEFLDVSQNALSGSLPSLKSMEYLEHLHLQGNMF 804

Query: 694  EGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLK 753
             G +     ++ +L+TLD+  N L GSIPN I  L +L  LLL  N + G IP  LC L 
Sbjct: 805  TGLIPRDFLNSSNLLTLDIRENRLFGSIPNSISALLKLRILLLGGNLLSGFIPNHLCHLT 864

Query: 754  EVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQS----- 808
            ++ L+DLS+N+ SG IP C  +        GE+       +  +V+      G       
Sbjct: 865  KISLMDLSNNSFSGPIPKCFGHIRF-----GEMK------KEDNVFEQFIESGYGFNSHI 913

Query: 809  -SPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLS 867
                  +++ V+F TKN    Y+G IL  MSG+DLSCN LTGEIP ++G L+ IHALNLS
Sbjct: 914  VYAVYNEKDEVEFVTKNRRDSYKGGILEFMSGLDLSCNNLTGEIPHELGMLSWIHALNLS 973

Query: 868  HNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD-R 926
            HN L G+IP  FSNL QIESLDLSYN L G+IP +L+ LN LEVF VAYNN SG++PD +
Sbjct: 974  HNQLNGSIPKGFSNLSQIESLDLSYNKLSGEIPLELVELNFLEVFSVAYNNFSGRVPDTK 1033

Query: 927  AQFSTFEEDSYEGNPFLCGQPLSKSCNDNGLTTVTPEASTENEGDSL-IDTDSFLITFTV 985
            AQF TF+E SYEGNPFLCG+ L + CN +  +   P  S E+E     I+   F  +FT 
Sbjct: 1034 AQFGTFDERSYEGNPFLCGELLKRKCNTSIESPCAPSQSFESEAKWYDINHVVFFASFTT 1093

Query: 986  SYGIVIIGIIGVLYINPYWRRRWFYLVEVCMTSCYYFVADNL 1027
            SY ++++G + +LYINPYWR RWF  +E C+ SCYYFV D+L
Sbjct: 1094 SYIMILLGFVTILYINPYWRHRWFNFIEECIYSCYYFVFDSL 1135

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482735|ref|XP_003632821.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 381/976 (39%), Positives = 539/976 (55%), Gaps = 43/976 (4%)

Query: 89   LEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLS 148
            L  L+++ N+ +  +  + F+ L KL  L +   G    + + +++ +  L SLKTL +S
Sbjct: 119  LHHLNLSANSFDGFIENEGFKSLSKLKKLEILNLGYNWFNKT-IIKQLSGLTSLKTLVVS 177

Query: 149  HTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHG 208
            +   +G   +Q       L+EL L   +L    L   + + TSL+ L +   +  G L  
Sbjct: 178  NNYIEGLFPSQGFCQLNKLQELDLS-YNLFQGILPPCLNNLTSLRLLDLSSNLFSGNLSS 236

Query: 209  QDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLV 268
                   + EY+D+ + Q + + +F      S   +  L   N+     T    G   L 
Sbjct: 237  PLLPNLASQEYIDLSYNQFEGSFSFSSFANHSNLQVVKLGRNNNKFEVETEYPVGWVPLF 296

Query: 269  HLQGLYI---------RDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISP-----GLCE 314
             L+ L +          +N  R    W L N T L+ L   +N L G + P       C+
Sbjct: 297  QLEALMLSNLVVVDLSHNNLTRRFANWLLENNTRLEFLALMNNSLMGQLLPLRPNTRFCQ 356

Query: 315  LVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSN 374
            L  L++L +  N  +G LP CL N TSLR+LD+S N  + N+SS  L +LTS+E + LS 
Sbjct: 357  LNKLQELDLSYNLFQGILPPCLNNFTSLRLLDISANLFSGNLSSPLLPNLTSLEYIDLSY 416

Query: 375  NHFFQIPISLEPLFNLSKLQTF---------------NGEINAQTESHYDSLTPKFQLTS 419
            N F +   S     N SKLQ                 N +   +TE +     P FQL  
Sbjct: 417  NQF-EGSFSFSSFANHSKLQVVILGRDNIKFKEFGRDNKKFEVETE-YPVGWVPLFQLKV 474

Query: 420  ISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGS 479
            +SLS     G  P FL +Q  L  V+LSH NL+G FPNWLLENNT LE LLL NNSL G 
Sbjct: 475  LSLSSCKLTGDLPGFLQYQFRLVGVDLSHNNLTGSFPNWLLENNTRLEILLLRNNSLMGQ 534

Query: 480  FRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKML 539
              +P+  + ++ +LD+ +N   G +   +   +P +  LNLS N F G IPSS A+++ L
Sbjct: 535  L-LPLGPNTRINSLDISHNQLDGQLQENVAHMIPNITSLNLSNNGFEGIIPSSIAELRAL 593

Query: 540  ERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFI 599
            + LD+S N  +GE+P+++      LEIL LSNN+  G IFS  FNLT L+ L L  N F 
Sbjct: 594  QILDLSTNNFSGEVPKQLLAAK-DLEILKLSNNKFHGEIFSRDFNLTGLLCLYLGNNQFT 652

Query: 600  GEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDS 659
            G +   +S+   L  L +S+N++ G+IP W+GN+  L+ ++M NNN +G +P E  Q   
Sbjct: 653  GTLSNVISRISWLWVLDVSNNYMSGEIPSWIGNMTLLRTLVMGNNNFKGKLPPEISQLQR 712

Query: 660  LKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHG 719
            ++ LD+S N++ G+LPS  S   +E +HL  N   G +     ++ +L+TLD+  N L G
Sbjct: 713  MEFLDVSQNALSGSLPSLKSMEYLEHLHLQGNMFTGLIPRDFLNSSNLLTLDIRENRLFG 772

Query: 720  SIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLN 779
            SIPN I  L +L  LLL  N + G IP  LC L E+ L+DLS+N+ SG IP C  +    
Sbjct: 773  SIPNSISALLKLRILLLRGNLLSGFIPNHLCHLTEISLMDLSNNSFSGPIPRCFGHIRFG 832

Query: 780  EGYHGE--VAPTSIWCRRAS--VYRSACLPGQS--SPPMGKEETVQFTTKNMSYYYQGRI 833
            E    +        W    S  VY    +      SP   +++ V+F TKN   +Y+G I
Sbjct: 833  ETKKEDNVFGQFMYWYELNSDLVYAGYLVKHWEFLSPTYNEKDEVEFVTKNRHDFYRGGI 892

Query: 834  LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
            L  MSG+DLSCN LTGEIP ++G L+ I ALNLSHN L G+IP +FSNL QIESLDLSYN
Sbjct: 893  LEFMSGLDLSCNNLTGEIPHELGMLSWIRALNLSHNQLNGSIPKSFSNLSQIESLDLSYN 952

Query: 894  LLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD-RAQFSTFEEDSYEGNPFLCGQPLSKSC 952
             L G+IP +L+ LN LEVF VAYNN SG++PD +AQF TF+E SYEGNPFLCG+ L + C
Sbjct: 953  KLGGEIPLELVELNFLEVFSVAYNNFSGRVPDTKAQFGTFDERSYEGNPFLCGELLKRKC 1012

Query: 953  NDNGLTTVTPEASTENEGDSL-IDTDSFLITFTVSYGIVIIGIIGVLYINPYWRRRWFYL 1011
            N +  +   P  S E+E     I+   F  +FT SY ++++G + +LYINPYWR RWF  
Sbjct: 1013 NTSIESPCAPSQSFESEAKWYDINHVVFFASFTTSYIMILLGFVIILYINPYWRHRWFNF 1072

Query: 1012 VEVCMTSCYYFVADNL 1027
            +E C+ SCYYFV D+L
Sbjct: 1073 IEECIYSCYYFVFDSL 1088

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073382|ref|XP_002304087.1| predicted protein [Populus trichocarpa] gi|222841519|gb|EEE79066.1| predicted protein [Populus trichocarpa]

 Score =  580 bits (1496), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 413/1114 (37%), Positives = 580/1114 (52%), Gaps = 118/1114 (10%)

Query: 11   QLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLA 70
             L  LDLS NNI G   +  L+  +RL  L   YL+ N    ++         +  L ++
Sbjct: 217  HLRFLDLSHNNITGMFPSWLLKNNTRLEQL---YLSGNSIVGTLQLQDHPYPKMTELDIS 273

Query: 71   DNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRID-- 128
            +N ++G I         NL+ L M  N      +P     +  L  L L  + +  +   
Sbjct: 274  NNNMSGQIPKDICLIFPNLDGLRMAKNGFTG-CIPSCLGNMSSLGVLDLSNNQLSTVKLE 332

Query: 129  ---------------GSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILD 173
                           G ++  S+ +  + + LYL    F G + +  L+ +     ++LD
Sbjct: 333  LLTTIWFLKLSNNNLGGQIPTSMFNSSTSEYLYLGDNNFWGQISDSPLNGWKTW--IVLD 390

Query: 174  ESDLHVSQLL-QSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTN 232
             S+   S +L +   + T+L  + +     +G +    F K   LEYL       D++ N
Sbjct: 391  LSNNQFSGILPRWFVNSTNLIAIDLSKNHFEGPISRHFFCKLDQLEYL-------DLSEN 443

Query: 233  FLQIVGESMPSLNFLSLTNSSLNKHTI---LDQGLCQLVHLQGLYIRDNDLRDGLPWCLA 289
               + G      N   +T+  L+K+ +   L         L  + +RDN     +P  + 
Sbjct: 444  --NLFGYIPSCFNSPQITHVHLSKNRLSGPLKYEFYNSSSLVTMDLRDNSFTGSIPNWVG 501

Query: 290  NMTSLQVLYASSNQLTGN------------------------------------------ 307
            N++SL VL   +N L G                                           
Sbjct: 502  NLSSLSVLLLRANHLDGFQLLPMRLGKLENLCLGGNQLNSSILSILSGLSSLKSLDLSNN 561

Query: 308  --ISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLT 365
                 G CE+  L++L +  N+  GSLP CL NL+SL++LD+S NQ T NI+ S L +L 
Sbjct: 562  MFTGSGWCEMKNLKQLDLSGNNFGGSLPDCLGNLSSLQLLDISENQFTGNIAFSPLTNLI 621

Query: 366  SIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQT--ESHYDSLTPKFQLTSISLS 423
            S+E L LSNN  F++P S++P  N S L+ F  E N      + +D L PKFQL   SLS
Sbjct: 622  SLEFLSLSNN-LFEVPTSMKPFMNHSSLKFFCNENNRLVIEPAAFDHLIPKFQLVFFSLS 680

Query: 424  GYVDG--GTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFR 481
               +      P FLY+Q+ L  ++LSH N++G FP+WLL+NNT LE L L+ NS+ G+ +
Sbjct: 681  KTTEALNVEIPNFLYYQYHLRFLDLSHNNITGMFPSWLLKNNTRLEQLYLSGNSIVGTLQ 740

Query: 482  MPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLER 541
            +  H + K+  LD+ NN   G IP +I    P L  L +++N F G IPS   +M  L  
Sbjct: 741  LQDHPYPKMTELDISNNNMSGQIPKDICLIFPNLDGLRMAKNGFTGCIPSCLGNMSSLGV 800

Query: 542  LDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGE 601
            LD+SNNQL+    E + T  F    L LSNN L G I +  FN +    L L  NNF G+
Sbjct: 801  LDLSNNQLSTVKLELLTTIWF----LKLSNNNLGGQIPTSMFNSSTSEYLYLGDNNFWGQ 856

Query: 602  IPES-LSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEF-CQRDS 659
            I +S L+       L LS+N   G +PRW  N   L  I +  N+ EGPI   F C+ D 
Sbjct: 857  ISDSPLNGWKTWIVLDLSNNQFSGILPRWFVNSTNLIAIDLSKNHFEGPISRHFFCKLDQ 916

Query: 660  LKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHG 719
            L+ LDLS N++FG +PSCF+   I  VHLSKN++ G L+   +++  LVT+DL  NS  G
Sbjct: 917  LEYLDLSENNLFGYIPSCFNSPQITHVHLSKNRLSGPLKYEFYNSSSLVTMDLRDNSFTG 976

Query: 720  SIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLN 779
            SIPN +  L  L+ LLL  N++ GE+PVQLC L+++ ++D+S N LSG +P CL N +  
Sbjct: 977  SIPNWVGNLSSLSVLLLRANHLDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLENLTFK 1036

Query: 780  EGYH-------GEVAPTSIWCRRASVYRSACLPGQSSP---------PMGKEETVQFTTK 823
            E          G + P  I       Y     P Q +          P   EE ++FTTK
Sbjct: 1037 ESSQKALMNLGGFLLPGFI----EKAYNEIMGPPQVNSIYTLLKGYWPNFTEEVIEFTTK 1092

Query: 824  NMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLK 883
            NM Y Y+G+IL+ MSGIDLS N   G IP + G L+ I +LNLSHNNLTG+IP TFSNLK
Sbjct: 1093 NMYYGYKGKILSYMSGIDLSDNNFVGAIPPEFGNLSEILSLNLSHNNLTGSIPATFSNLK 1152

Query: 884  QIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA-QFSTFEEDSYEGNPF 942
            +IESLDLSYN  +G IPPQL  + TLEVF VA+NNLSGK P+R  QF TF+E  YEGNPF
Sbjct: 1153 RIESLDLSYNNFNGDIPPQLTEMTTLEVFSVAHNNLSGKTPERKYQFGTFDESCYEGNPF 1212

Query: 943  LCGQPLSKSCNDNGLTT----VTPEASTENEGDSLIDTDSFLITFTVSYGIVIIGIIGVL 998
            LCG PL  +C++  + +      P  + E E D  ID + F I+F+V Y +V++ I  VL
Sbjct: 1213 LCGPPLRNNCSEEVVLSQPVLSQPVPNDEQEDDGFIDMEFFYISFSVCYTVVVMTIAAVL 1272

Query: 999  YINPYWRRRWFYLVEVCMTSCYYFVADNLIPRRF 1032
            YINPYWRRRW Y +E C+ +CYYFV  +   R+F
Sbjct: 1273 YINPYWRRRWLYFIEDCIDTCYYFVVASF--RKF 1304

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482749|ref|XP_002262614.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  576 bits (1484), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 404/1047 (38%), Positives = 564/1047 (53%), Gaps = 114/1047 (10%)

Query: 1    MNASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGG 60
            +N SLF PF++L  L+LS N+  G ++NE  + LS+L  L+ L L DN FN +I   L G
Sbjct: 106  LNVSLFLPFEELHHLNLSANSFDGFIENEGFKSLSKLKKLEILNLRDNQFNKTIIKQLSG 165

Query: 61   LSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLG 120
            L+SL+ L ++ N + G    +   SL+NLE LD++           DF  L  L  L   
Sbjct: 166  LTSLKTLVVSYNYIEGLFPSQDFASLNNLEILDLS-----------DFASLNNLEIL--- 211

Query: 121  GSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVS 180
                        L    SL +LK L LS+  F G +V   +   ++L+ L L  +DL+ S
Sbjct: 212  -----------DLSDFASLSNLKVLDLSYNSFSG-IVPSSIRLMSSLKSLSLAGNDLNGS 259

Query: 181  QLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGES 240
               Q ++S  +L   ++   +L             +LEY+D+ + Q + + +F      S
Sbjct: 260  LPNQDLSS--NLFSENLSSTLLP---------NLTSLEYIDLSYNQFEGSFSFSSFANHS 308

Query: 241  MPSLNFLSLTNSSLNKHTILD-QGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYA 299
               +  L   N+    H +    G CQL  LQ L +  N  +  LP CL N+TSL++L  
Sbjct: 309  KLQVVILGSYNNKFELHVLFSFVGFCQLNKLQELDLSYNLFQGTLPPCLNNLTSLRLLDL 368

Query: 300  SSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSS 359
            SSN L+GN+S  L                       L NLTSL  +D+SYN    + S S
Sbjct: 369  SSNHLSGNLSSPL-----------------------LPNLTSLEYIDLSYNHFEGSFSFS 405

Query: 360  SLMHLTSIEELIL-SNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYD-SLTPKFQL 417
            S  + + ++ +IL S+N+ F++                        E+ Y     P FQL
Sbjct: 406  SFANHSKLQVVILGSDNNKFEV------------------------ETEYPVGWVPLFQL 441

Query: 418  TSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLF 477
             ++ LS     G  P+FL +Q  L  V+LSH NL+G F NWLLENNT LE L+L NNSL 
Sbjct: 442  KALFLSNCKLTGDIPDFLQYQFKLEVVDLSHNNLTGRFTNWLLENNTRLEFLVLRNNSLM 501

Query: 478  GSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMK 537
            G   +P+  + ++ +LD+ +N   G +   +G  +P ++ LNLS N F G +PSS A+M 
Sbjct: 502  GQL-LPLRPNTRILSLDISHNQLDGRLQENVGHMIPNIVFLNLSNNGFEGLLPSSIAEMS 560

Query: 538  MLERLDISNNQLTGEIPER-MATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGN 596
             L  LD+S N  +GE+P++ +AT    L IL LS N+  G IFS  FN+T L  L LD N
Sbjct: 561  SLRVLDLSANNFSGEVPKQLLATK--DLVILKLSYNKFHGEIFSRDFNMTGLDILYLDNN 618

Query: 597  NFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQ 656
             F+G +   +S    L  L +S+N++ G+IP  +GN+  L+ ++M NNN  G +P E  Q
Sbjct: 619  QFMGTLSNVISGSSQLMVLDVSNNYMSGEIPSGIGNMTELRTLVMGNNNFRGKLPPEISQ 678

Query: 657  RDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNS 716
               +K LD+S N++ G+LPS  S   +E +HL  N   G +     ++  L+TLD+  N 
Sbjct: 679  LQQMKFLDVSQNALSGSLPSLKSMEYLEHLHLQGNMFTGLIPRDFLNSSDLLTLDMRDNR 738

Query: 717  LHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNT 776
            L GSIPN I  L +L  LLL  N   G IP  LC L ++ L+DLS+N+ SG IP C  + 
Sbjct: 739  LFGSIPNSISALLELRILLLRGNLFSGFIPNHLCHLTKISLMDLSNNSFSGPIPKCFGDI 798

Query: 777  SLNE--------------GYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTT 822
               E              GY G+        R   V  +       S    ++  V+F T
Sbjct: 799  RFGEMKKENDVFRQFIDFGYGGD-------SRNLYVGFTVKKWEFDSDVYDEKNEVEFVT 851

Query: 823  KNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNL 882
            KN    Y G IL  M G+DLSCN LTGEIP ++G L+ IHALNLSHN L  +IP +FSNL
Sbjct: 852  KNRHDSYSGDILNFMFGLDLSCNNLTGEIPHKLGKLSWIHALNLSHNQLKDSIPKSFSNL 911

Query: 883  KQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD-RAQFSTFEEDSYEGNP 941
             QIESLDLSYN L G+IP +L+ LN LEVF VAYNN+SG++PD +AQF TF+E SYEGNP
Sbjct: 912  SQIESLDLSYNKLSGEIPLELVELNFLEVFSVAYNNISGRVPDTKAQFGTFDERSYEGNP 971

Query: 942  FLCGQPLSKSCNDNGLTTVTPEASTENEGDSL-IDTDSFLITFTVSYGIVIIGIIGVLYI 1000
            FLCG  L + CN +      P  S E+E     I+   F  +FT SY ++++G + +LYI
Sbjct: 972  FLCGTLLKRKCNTSIEPPCAPSQSFESEAKWYDINHVVFFASFTTSYIMILLGFVTILYI 1031

Query: 1001 NPYWRRRWFYLVEVCMTSCYYFVADNL 1027
            NPYWR RWF  +E C+ SCYYFV DNL
Sbjct: 1032 NPYWRHRWFNFIEECIYSCYYFVFDNL 1058

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123984|ref|XP_002330258.1| predicted protein [Populus trichocarpa] gi|222871714|gb|EEF08845.1| predicted protein [Populus trichocarpa]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 408/1043 (39%), Positives = 545/1043 (52%), Gaps = 156/1043 (14%)

Query: 1    MNASLFTPFQQLESLDLSWNNIAGCVQNESLERL-SRLTNLKFLYLNDNHF-NNSIFSSL 58
            +NASLF PF++L+SLDL    + GC +NE    L S+L  L  L L+ N F ++SI S  
Sbjct: 98   LNASLFLPFEELQSLDLGETGLVGCSENEGFGTLSSKLRKLHVLGLSYNKFYSDSILSCF 157

Query: 59   GGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLY 118
             GLSSL+ L L+ N L GS +  GLN LS+                      L+KL  L+
Sbjct: 158  TGLSSLKSLDLSWNTLTGSANFYGLNVLSS---------------------RLKKLENLH 196

Query: 119  LGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKG-TVVNQKLHNFTNLEELILDESDL 177
            L G+         +  S+    SLK+L LS+    G T +N    N T LEEL LD S L
Sbjct: 197  LRGNQY----NDSIFSSLTGFSSLKSLDLSYNMLTGSTSINGTFFNSTTLEELYLDGSSL 252

Query: 178  HVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIV 237
             ++  L +I    +LK LS  +C L G L  Q     KNLE L                 
Sbjct: 253  PLN-FLHNIGVLPALKVLSAGECDLNGTLPAQGLCGLKNLEQL----------------- 294

Query: 238  GESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVL 297
                                                ++ +N+L   LP C  N++SLQ+L
Sbjct: 295  ------------------------------------FLSENNLEGSLPDCFKNLSSLQLL 318

Query: 298  YASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENIS 357
              S NQ  GNI+                     S P  L NL SL               
Sbjct: 319  DVSRNQFIGNIA---------------------SSP--LTNLLSL--------------- 340

Query: 358  SSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEIN---AQTESHYDSLTPK 414
                      E + LSNNH FQ+PIS++P  N S L+ F+ + N    +  S +D L PK
Sbjct: 341  ----------EFISLSNNH-FQVPISMKPFMNHSSLRFFSSDNNRLVTEPMSFHD-LIPK 388

Query: 415  FQLTSISLSGYVDGG---TFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLL 471
            FQL   SLS           P FLY+QHDL  ++LS  +  G FP+WLL+NNT LE L L
Sbjct: 389  FQLVFFSLSKSSSEALNVETPSFLYNQHDLRVLDLSQNSFIGMFPSWLLKNNTRLEQLFL 448

Query: 472  ANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPS 531
              NS FG+ ++  H +  +  +D+ NN   G IP  I      L  L +++N   G IPS
Sbjct: 449  NENSFFGTLQLQDHPNPDMTAIDISNNNMHGEIPKNICLIFSNLWTLRMAKNGLTGCIPS 508

Query: 532  SFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTL 591
               +   L  LD+SNNQL+    E+  T    L  L LSNN L G + +   N + L  L
Sbjct: 509  CLGNSSSLGVLDLSNNQLSMVELEQFIT----LTFLKLSNNNLGGQLPASMVNSSRLNYL 564

Query: 592  QLDGNNFIGEI---PESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEG 648
             L  NNF G+I   P  +   + +  L LS+N   G +PRW  NL  +  I +  N+  G
Sbjct: 565  YLSDNNFWGQISDFPSPIKTIWPV--LDLSNNQFSGMLPRWFVNLTQIFAIDLSKNHFNG 622

Query: 649  PIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLV 708
            PIP+EFC+ D LK LDLS+N++F ++PSCF+P  I  VHLSKN++ G L    +++  LV
Sbjct: 623  PIPVEFCKLDELKYLDLSDNNLFDSIPSCFNPPHITHVHLSKNRLSGPLTYGFYNSSSLV 682

Query: 709  TLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGR 768
            TLDL  N+  GSI N I  L  L+ LLL  N   GE  VQLC L+++ ++D+S N LSG 
Sbjct: 683  TLDLRDNNFTGSISNWIGNLSSLSVLLLRANNFDGEFLVQLCLLEQLSILDVSQNQLSGP 742

Query: 769  IPPCLVNTSLNEGYHG-------EVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFT 821
            +P CL N S  E Y             T I        ++  L G S  P+  EE ++FT
Sbjct: 743  LPSCLGNLSFKESYEKASVDFGFHFGSTPIEKAYYEFNQTRALLGSSYIPITTEEVIEFT 802

Query: 822  TKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSN 881
             K+M Y Y+G+IL+ MSGIDLS NK +G IP ++G L+ + ALNLSHNNLTG+IP TFSN
Sbjct: 803  AKSMYYGYKGKILSFMSGIDLSSNKFSGAIPPELGNLSELLALNLSHNNLTGSIPATFSN 862

Query: 882  LKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA-QFSTFEEDSYEGN 940
            LKQIES DLSYN L G IP +L  + TLEVF VA+NNLSG+ P+R  QF TF+E SYEGN
Sbjct: 863  LKQIESFDLSYNNLDGVIPHKLYEITTLEVFSVAHNNLSGETPERKYQFGTFDESSYEGN 922

Query: 941  PFLCGQPLSKSCNDNGLTTVTPEASTENEGDSLIDTDSFLITFTVSYGIVIIGIIGVLYI 1000
            PFLCG PL  +C++    ++ P  + + E D  ID + F I+  V Y +V++GI  VLYI
Sbjct: 923  PFLCGPPLQNNCSEEESPSL-PMPNDKQEDDGFIDMNFFYISLGVGYIVVVMGIAAVLYI 981

Query: 1001 NPYWRRRWFYLVEVCMTSCYYFV 1023
            NPYWR  WF  ++ C+ +C+ F+
Sbjct: 982  NPYWRCGWFNFIDYCIDTCFNFL 1004

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1037
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.841	0.873	0.341	9.1e-116
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.688	0.659	0.397	1.2e-115
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.778	0.905	0.345	5.5e-109
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.836	0.888	0.341	2e-104
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.752	0.834	0.329	1.1e-94
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.809	0.869	0.307	4.4e-84
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.626	0.519	0.293	3.1e-66
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.657	0.546	0.301	2.4e-65
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.503	0.574	0.343	9e-65
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.622	0.586	0.304	8.8e-62

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 1141 (406.7 bits), Expect = 9.1e-116, P = 9.1e-116
 Identities = 315/922 (34%), Positives = 467/922 (50%)

Query:   120 GGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHV 179
             G SG+   D  +  +S+  L +L+ L LS  +F  ++    L+  T+L  L L  +++H 
Sbjct:    54 GFSGL--FDDVEGYKSLSRLRNLEILDLSSHRFNNSIF-PFLNAATSLTTLFLTYNNMHS 110

Query:   180 SQLLQSIASFTSLKHLSMQDCVLKGALHGQDF---LKFKNLEYLDMGWVQVDVNTNFLQI 236
               L++     T+L+HL ++     G++  QD+    +F+ LE LD+       N+     
Sbjct:   111 PFLVKEFKDLTNLEHLDLRGNRFNGSIPTQDYNSLRRFRKLEILDLS--DNLFNSRIFPF 168

Query:   237 VGESMPXXXXXXXXXXXXXKHTILDQGLCQLVHLQGLYIRDNDLRDGLP----WCLANMT 292
             +  +                    +  L  L +++ L +  N     +P    + L  + 
Sbjct:   169 LNSATSLKSLSLWGNNMGGPFPAKE--LRDLTNVELLDLSRNRFNGSIPVRALFALRKLK 226

Query:   293 SLQVL---YASSNQLTGNIS---P--GLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRV 344
             +L +    ++SS +L G  +   P  G C    + +L + NN L G  PLCL +LT LRV
Sbjct:   227 ALDLSDNEFSSSVELQGKFAKTKPLSGTCPWKNMEELKLSNNKLAGQFPLCLTSLTGLRV 286

Query:   345 LDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQT 404
             LD+S NQLT N+ S+ L +L S+E L L  N+F     SL  L NLSKL+    +  + +
Sbjct:   287 LDLSSNQLTGNVPSA-LANLESLEYLSLFGNNFEGF-FSLGLLANLSKLKVLRLDSQSNS 344

Query:   405 -ESHYD-SLTPKFQLTSISLSGYVDGGTFPEFLYHQHDXXXXXXXXXXXXGEFPXXXXXX 462
              E  ++ S  PKFQL  I+L    +    P FL HQ D            G FP      
Sbjct:   345 LEVEFETSWKPKFQLVVIALRS-CNLEKVPHFLLHQKDLHHVDLSDNQIHGNFPSWLLEN 403

Query:   463 XXXXXXXXXXXXSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVE-IGTYLPGLMELNLS 521
                         S F SF++P  +H  L  L+V  N F  H+ ++  G  LP L+ +NL+
Sbjct:   404 NTKLEVLLLQNNS-FTSFQLPKSAHN-LLFLNVSVNKFN-HLFLQNFGWILPHLVCVNLA 460

Query:   522 RNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSE 581
              N F G++PSS  +MK +E LD+S+N+  G++P R   GC++L IL LS+N+L G +F E
Sbjct:   461 YNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPE 520

Query:   582 KFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIM 641
               N T L  + +D N F G I +       L  L +S+N L G IP W+G    L  + +
Sbjct:   521 AANFTRLWVMSMDNNLFTGNIGKGFRSLPSLNVLDISNNKLTGVIPSWIGERQGLFALQL 580

Query:   642 PNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESII 701
              NN LEG IP        L++LDLS+N + G +P   S      V L +N     L  +I
Sbjct:   581 SNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIPPHVSSIYHGAVLLLQNN---NLSGVI 637

Query:   702 HDNP--HLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLID 759
              D    +++ LDL  N L G++P  I+    ++ LLL  N   G+IP Q C L  ++L+D
Sbjct:   638 PDTLLLNVIVLDLRNNRLSGNLPEFINT-QNISILLLRGNNFTGQIPHQFCSLSNIQLLD 696

Query:   760 LSHNNLSGRIPPCLVNTS--LNEG---YHGEVAPTSIWCRRASVYRSACLPGQSSPPMGK 814
             LS+N  +G IP CL NTS  L +G   Y  +V P+     +  VY  + L       + +
Sbjct:   697 LSNNKFNGSIPSCLSNTSFGLRKGDDSYRYDV-PSRFGTAKDPVYFESLLMIDEFNMVNE 755

Query:   815 EET---VQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNL 871
               +   ++F TK+    Y G  L  + G+DLS N+L+GEIP ++G L  + ALNLSHNNL
Sbjct:   756 TNSQTKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVELGGLVELEALNLSHNNL 815

Query:   872 TGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFST 931
             +G I  +FS LK +ESLDLS+N L G IP QL  + +L VF V+YNNLSG +P   QF+T
Sbjct:   816 SGVILESFSGLKNVESLDLSFNRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQGRQFNT 875

Query:   932 FEEDSYEGNPFLCGQPLSKSCNDNGLTTVTPEASTENEGDSLIDTDSFLITFTVSYXXXX 991
             FE  SY GNP LCG+ +  SC  N      P  +     +S +D +SF  +F  +Y    
Sbjct:   876 FETQSYFGNPLLCGKSIDISCASNNFH---PTDNGVEADESTVDMESFYWSFVAAYVTIL 932

Query:   992 XXXXXXLYINPYWRRRWFYLVE 1013
                   L  +  W R WFY+V+
Sbjct:   933 LGILASLSFDSPWSRAWFYIVD 954

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 1140 (406.4 bits), Expect = 1.2e-115, P = 1.2e-115
 Identities = 298/750 (39%), Positives = 388/750 (51%)

Query:   292 TSLQVLYASSNQL--TGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSY 349
             TSLQVL    NQL  T     G+C L+ LR+L + +N L  SLP CL NLT LR LD+S 
Sbjct:   332 TSLQVLDFKRNQLSLTHEGYLGICRLMKLRELDLSSNALT-SLPYCLGNLTHLRTLDLSN 390

Query:   350 NQLTENISSSSLMHLTSIEELI--LSNNHFFQIPISLEPLFNLSKLQTFN-----GEINA 402
             NQL  N+SS  +  L S+ E +  L NN  F        L N ++L  F      G I  
Sbjct:   391 NQLNGNLSSF-VSGLPSVLEYLSLLDNN--FDGSFLFNSLVNQTRLTVFKLSSKVGVIQV 447

Query:   403 QTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDXXXXXXXXXXXXGEFPXXXXXX 462
             QTES   S  P FQL  + LS    G T   FL HQ D            G FP      
Sbjct:   448 QTES---SWAPLFQLKMLYLSNCSLGSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKN 504

Query:   463 XXXXXXXXXXXXSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSR 522
                         SL    ++PI  H  L  LD+ +N     I  +IG   P L  +N S 
Sbjct:   505 NTRLQTILLSGNSLT-KLQLPILVHG-LQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSS 562

Query:   523 NAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEK 582
             N F G+IPSS  +MK L+ LD+S+N L G++P    +GC+SL +L LSNN+LQG IFS+ 
Sbjct:   563 NHFQGTIPSSIGEMKSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKH 622

Query:   583 FNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMP 642
              NLT L+ L LDGNNF G + E L K   L  L +SDN   G +P W+G +  L Y+ M 
Sbjct:   623 ANLTGLVGLFLDGNNFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMS 682

Query:   643 NNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIH 702
              N L+GP P    Q   ++++D+S+NS  G++P   +  S+ ++ L  N+  G +   + 
Sbjct:   683 GNQLKGPFPF-LRQSPWVEVMDISHNSFSGSIPRNVNFPSLRELRLQNNEFTGLVPGNLF 741

Query:   703 DNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSH 762
                 L  LDL  N+  G I N ID+  +L  LLL +N  +  IP ++CQL EV L+DLSH
Sbjct:   742 KAAGLEVLDLRNNNFSGKILNTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSH 801

Query:   763 NNLSGRIPPCLVNTSL----NEGYHGEVAP---TSIWCRRASVYRSACL--PGQSSPPMG 813
             N   G IP C    S     N+     VA    + I       Y S      G  +    
Sbjct:   802 NQFRGPIPSCFSKMSFGAEQNDRTMSLVADFDFSYITFLPHCQYGSHLNLDDGVRNGYQP 861

Query:   814 KEETV-QFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLT 872
             K  TV  F TK+    YQG IL  M G+DLS N+L+GEIP +IG L  I +LNLS N LT
Sbjct:   862 KPATVVDFLTKSRYEAYQGDILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLT 921

Query:   873 GTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTF 932
             G+IP + S LK +ESLDLS N L G IPP L  LN+L    ++YNNLSG+IP +    TF
Sbjct:   922 GSIPDSISKLKGLESLDLSNNKLDGSIPPALADLNSLGYLNISYNNLSGEIPFKGHLVTF 981

Query:   933 EEDSYEGNPFLCGQPLSKSCNDN------GLTTVTPEASTENEGDSLIDTDSFLITFTVS 986
             +E SY GN  LCG P +K+C          ++T   E   E EG+ +ID   F  T    
Sbjct:   982 DERSYIGNAHLCGLPTNKNCISQRVPEPPSVSTHAKEEENEEEGN-VIDMVWFYWTCAAV 1040

Query:   987 YXXXXXXXXXXLYINPYWRRRWFYLVEVCM 1016
             Y          LYI+  W R WFY V++C+
Sbjct:  1041 YISTSLALFAFLYIDSRWSREWFYRVDLCV 1070

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1077 (384.2 bits), Expect = 5.5e-109, P = 5.5e-109
 Identities = 293/848 (34%), Positives = 428/848 (50%)

Query:   189 FTSLKHLSMQDCVLKGALH----GQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPXX 244
             F  L+ L++     KG       G+     +NLE LD+G    D  T+ L  + E++   
Sbjct:    49 FEELQSLNLSSGYFKGWFDERKGGKGLGSLRNLETLDLGVNFYD--TSVLPYLNEAVSLK 106

Query:   245 XXXXXXXXXXXKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWC-LANMTSLQVLYASSNQ 303
                           +  Q L  L  L+ L ++ N     LP   L N+ +L+ L  S+N+
Sbjct:   107 TLILHDNLFKGGFPV--QELINLTSLEVLDLKFNKFSGQLPTQELTNLRNLRALDLSNNK 164

Query:   304 LTGNISP-GLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLM 362
              +G++   G+C L  L++L +  N   G +PLC +  + LRVLD+S N L+  I    + 
Sbjct:   165 FSGSLQKQGICRLEQLQELRLSRNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKIPYF-IS 223

Query:   363 HLTSIEELILSNNHFFQIPISLEPLFNLSKLQTF-----NGEINAQTESHYDSLTPKFQL 417
                S+E L L +N F  +  SL  +  L++L+ F     +G +     +    L  + QL
Sbjct:   224 DFKSMEYLSLLDNDFEGL-FSLGLITELTELKVFKLSSRSGMLQIVETNVSGGL--QSQL 280

Query:   418 TSISLSGYVDGGTFPEFLYHQHDXXXXXXXXXXXXGEFPXXXXXXXXXXXXXXXXXXSLF 477
             +SI LS + + G  P FL++Q +            G FP                  S F
Sbjct:   281 SSIMLS-HCNLGKIPGFLWYQQELRVIDLSNNILSGVFPTWLLENNTELQALLLQNNS-F 338

Query:   478 GSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMK 537
              +  +P  + ++L  LD+  N F   +P ++G  L  L  LNLS N F G++PSS A M+
Sbjct:   339 KTLTLP-RTMRRLQILDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARME 397

Query:   538 MLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNN 597
              +E +D+S N  +G++P  + TGC+SL  L LS+NR  G I  +  + T+L+TL +D N 
Sbjct:   398 NIEFMDLSYNNFSGKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNM 457

Query:   598 FIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQR 657
             F G+IP +L    ML  + LS+N L G IPRWLGN   L+ + + NN L+G IP      
Sbjct:   458 FTGKIPRTLLNLRMLSVIDLSNNLLTGTIPRWLGNF-FLEVLRISNNRLQGAIPPSLFNI 516

Query:   658 DSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSL 717
               L +LDLS N + G+LP   S      + L  N + G +   +     L  LDL  N L
Sbjct:   517 PYLWLLDLSGNFLSGSLPLRSSSDYGYILDLHNNNLTGSIPDTLWYGLRL--LDLRNNKL 574

Query:   718 HGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTS 777
              G+IP      P ++ +LL  N + G+IPV+LC L  VR++D +HN L+  IP C+ N S
Sbjct:   575 SGNIP-LFRSTPSISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRLNESIPSCVTNLS 633

Query:   778 LNEGYHGEVA----PTSIWCRRASVY-----RSACLPGQSSPPMGKEETVQ--FTTKNMS 826
                G H        P S+      +Y      S  +  + S     +  VQ  F  K   
Sbjct:   634 FGSGGHSNADSDWYPASLLSNFMEIYTEVYYESLIVSDRFSLDYSVDFNVQVEFAVKQRY 693

Query:   827 YYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIE 886
               Y    L  M G+DLS N+L+G IP ++G L R+ +LNLS N+L+G+IP +FSNL+ IE
Sbjct:   694 DLYMRGTLNQMFGLDLSSNELSGNIPEELGDLKRVRSLNLSRNSLSGSIPGSFSNLRSIE 753

Query:   887 SLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGQ 946
             SLDLS+N LHG IP QL +L +L VF V+YNNLSG IP   QF+TF E SY GN  LCG 
Sbjct:   754 SLDLSFNKLHGTIPSQLTLLQSLVVFNVSYNNLSGVIPQGKQFNTFGEKSYLGNFLLCGS 813

Query:   947 PLSKSCNDNGLTTVTPEASTENEGDS-LIDTDSFLITFTVSYXXXXXXXXXXLYINPYWR 1005
             P  +SC   G TT++     E++ +S L+D      +   +Y          L  +  WR
Sbjct:   814 PTKRSC---GGTTISSGKEYEDDDESGLLDIVVLWWSLGTTYVTVMMGFLVFLCFDSPWR 870

Query:  1006 RRWFYLVE 1013
             R WF LV+
Sbjct:   871 RAWFCLVD 878

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
 Identities = 317/929 (34%), Positives = 443/929 (47%)

Query:   126 RIDGSKVLQSIGSLPSLKTLYLSHTKFK-GTVVNQKL-HNFTNLEELILD-ESDLHVSQL 182
             R +G K  Q+ G +  L    +  T FK  +++N  L H F  L  L L  E     + L
Sbjct:    68 RWEGLKCNQTSGRIIELS---IGQTNFKESSLLNLSLLHPFEELRSLNLSGEIYNEFNGL 124

Query:   183 LQSIASFTSLKHL-SMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQ--IVGE 239
                +  + SL+ L +++   L           F N            + T F+Q   +G 
Sbjct:   125 FDDVEGYESLRRLRNLEILDLSSNSFNNSIFPFLN--------AATSLTTLFIQSNYIGG 176

Query:   240 SMPXXXXXXXXXXXXX--KHTILDQGLCQLVHLQGLYIRD---NDLRDGLPWC-LANMTS 293
              +P                 +  +  + +  HL+ L   D   ND    +    L  +T+
Sbjct:   177 PLPIKELKNLTKLELLDLSRSGYNGSIPEFTHLEKLKALDLSANDFSSLVELQELKVLTN 236

Query:   294 LQVLYASSNQLTGNISPGL-CELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQL 352
             L+VL  + N L G I   + CE+  LR+L +  N   G LP+CL NL  LRVLD+S NQL
Sbjct:   237 LEVLGLAWNHLDGPIPKEVFCEMKNLRQLDLRGNYFEGQLPVCLGNLNKLRVLDLSSNQL 296

Query:   353 TENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFN----GE-INAQTESH 407
             + N+ +S    L S+E L LS+N+F     SL PL NL+KL+ F      E +  +TES+
Sbjct:   297 SGNLPAS-FNSLESLEYLSLSDNNFEGF-FSLNPLANLTKLKVFRLSSTSEMLQVETESN 354

Query:   408 YDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDXXXXXXXXXXXXGEFPXXXXXXXXXXX 467
             +    PKFQLT  +L  +   G  P FL +Q +            G+ P           
Sbjct:   355 W---LPKFQLTVAALP-FCSLGKIPNFLVYQTNLRLVDLSSNRLSGDIPTWLLENNPELK 410

Query:   468 XXXXXXXSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNG 527
                    S F  F++P   H KL  LD   N   G +P  IG  LP L+ +N S N F G
Sbjct:   411 VLQLKNNS-FTIFQIPTIVH-KLQVLDFSANDITGVLPDNIGHVLPRLLHMNGSHNGFQG 468

Query:   528 SIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTN 587
             ++PSS  +M  +  LD+S N  +GE+P  + TGCFSL  L LS+N   G I   +  LT+
Sbjct:   469 NLPSSMGEMNDISFLDLSYNNFSGELPRSLLTGCFSLITLQLSHNSFSGPILPIQTRLTS 528

Query:   588 LMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIM---PNN 644
             L+ L++  N F GEI   L     L     S+N L G I   +   P   ++IM    NN
Sbjct:   529 LIVLRMHNNLFTGEIGVGLRTLVNLSIFDASNNRLTGLISSSIP--PDSSHLIMLLLSNN 586

Query:   645 NLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIE-QVHLSKNKIEGRLESIIHD 703
              LEG +P        L  LDLS N + G LPS    +    ++ L  N   G L   + +
Sbjct:   587 LLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSVVNSMYGIKIFLHNNSFTGPLPVTLLE 646

Query:   704 NPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHN 763
             N ++  LDL  N L GSIP  ++    +  LLL  N + G IP +LC L  +RL+DLS N
Sbjct:   647 NAYI--LDLRNNKLSGSIPQFVNTGKMIT-LLLRGNNLTGSIPRKLCDLTSIRLLDLSDN 703

Query:   764 NLSGRIPPCL--VNTSLNEGY--HGEVAPTSIW-CRRASVYRSACLPGQ-----SSPPMG 813
              L+G IPPCL  ++T L EG    G     S     +   YRS  L  +      S  M 
Sbjct:   704 KLNGVIPPCLNHLSTELGEGIGLSGFSQEISFGDSLQMEFYRSTFLVDEFMLYYDSTYMI 763

Query:   814 KEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTG 873
              E  ++F  K     + G  L  M G+DLS N+L+G IP ++G L+++ ALNLS N L+ 
Sbjct:   764 VE--IEFAAKQRYDSFSGGTLDYMYGLDLSSNELSGVIPAELGDLSKLRALNLSRNLLSS 821

Query:   874 TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFE 933
             +IP  FS LK IESLDLSYN+L G IP QL  L +L VF V++NNLSG IP   QF+TF 
Sbjct:   822 SIPANFSKLKDIESLDLSYNMLQGNIPHQLTNLTSLAVFNVSFNNLSGIIPQGGQFNTFN 881

Query:   934 EDSYEGNPFLCGQPLSKSCNDNGLTTVTPEASTENEGDSLIDT--DSFLITFTV--SYXX 989
             ++SY GNP LCG P  +SC     T        E E D   +   D  ++ +T   +Y  
Sbjct:   882 DNSYLGNPLLCGTPTDRSCEGKKNTKEADNGGEEEEEDDDDEAAIDMVVLYWTTGSTYAI 941

Query:   990 XXXXXXXXLYINPYWRRRWFYLVEVCMTS 1018
                     +  +  WRR W  +V+  + S
Sbjct:   942 ALIGILVLMCFDCPWRRTWLCIVDAFIAS 970

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
 Identities = 268/813 (32%), Positives = 373/813 (45%)

Query:   227 VDVNTNFLQIVGESMPXXXXXXXXXXXXXKHTILD-----QGLCQLVHLQGLYIRDNDLR 281
             +D++TN+      + P              +  +D     +GL  L +L+ L +R N L 
Sbjct:   129 MDLSTNYFNY--STFPFLNAATSLTTLILTYNEMDGPFPIKGLKDLTNLELLDLRANKLN 186

Query:   282 DGLPWCLANMTSLQVLYASSNQLTGNIS-PGLCELVLLRKLYIDNNDLRGSLPL-CLANL 339
               +   L ++  L+ L  SSN+ + ++    L  L+ L  L +  N + G +P+     L
Sbjct:   187 GSMQE-LIHLKKLKALDLSSNKFSSSMELQELQNLINLEVLGLAQNHVDGPIPIEVFCKL 245

Query:   340 TSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFF-QIPISLEPLFNLSKLQTFNG 398
              +LR LD+  N     I    L  L  +  L LS+N     +P S   L +L  L   + 
Sbjct:   246 KNLRDLDLKGNHFVGQIPLC-LGSLKKLRVLDLSSNQLSGDLPSSFSSLESLEYLSLSDN 304

Query:   399 EINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDXXXXXXXXXXXXGEFPXX 458
               +       + LT    L  + +  +      P FL +Q              G  P  
Sbjct:   305 NFDGSFS--LNPLTNLTNLKFVVVLRFCSLEKIPSFLLYQKKLRLVDLSSNNLSGNIPTW 362

Query:   459 XXXXXXXXXXXXXXXXSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMEL 518
                             S F  F +P   H  L   D   N   G  P ++   LP L+ L
Sbjct:   363 LLTNNPELEVLQLQNNS-FTIFPIPTMVHN-LQIFDFSANNI-GKFPDKMDHALPNLVRL 419

Query:   519 NLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHI 578
             N S N F G  P+S  +MK +  LD+S N  +G++P    TGC S+  L LS+N+  G  
Sbjct:   420 NGSNNGFQGYFPTSIGEMKNISFLDLSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFSGRF 479

Query:   579 FSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQY 638
                + N  +L  L++D N F G I   LS   MLR L +S+N L G IPRWL   P L Y
Sbjct:   480 LPRETNFPSLDVLRMDNNLFTGNIGGGLSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDY 539

Query:   639 IIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLE 698
             +++ NN LEG IP        L  LDLS N   G LPS         + L  N   G + 
Sbjct:   540 VLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFSGALPSHVDSELGIYMFLHNNNFTGPIP 599

Query:   699 SIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLI 758
               +  +  +  LDL  N L GSIP + D    +N LLL  N + G IP +LC L  VRL+
Sbjct:   600 DTLLKSVQI--LDLRNNKLSGSIP-QFDDTQSINILLLKGNNLTGSIPRELCDLSNVRLL 656

Query:   759 DLSHNNLSGRIPPCLVNTSLNEGYHGEVA---PTSIW--CRRASVYRSACLPGQSSPPMG 813
             DLS N L+G IP CL N S        +A   P S         +Y+S  L  +      
Sbjct:   657 DLSDNKLNGVIPSCLSNLSFGRLQEDAMALNIPPSFLQTSLEMELYKSTFLVDKIEVDRS 716

Query:   814 K-EET-VQFTTKNMSYYYQGR------ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALN 865
               +ET ++F  K     Y GR      IL  M G+DLS N+L+G IPT++G L ++  LN
Sbjct:   717 TYQETEIKFAAKQRYDSYSGRSEFSEGILRLMYGMDLSNNELSGVIPTELGDLLKLRTLN 776

Query:   866 LSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD 925
             LSHN+L G+IP++FS L  +ESLDLS+N+L G IP  L  L +L VF V+ NNLSG IP 
Sbjct:   777 LSHNSLLGSIPSSFSKLIDVESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNLSGIIPQ 836

Query:   926 RAQFSTFEEDSYEGNPFLCGQPLSKSCNDNGLTTVTPEASTENEGDSLIDTDSFLITFTV 985
               QF+TFEE+SY GNP LCG P S+SC  N           E +  + ID   F  +   
Sbjct:   837 GRQFNTFEEESYLGNPLLCGPPTSRSCETNKSPEEADNGQEEEDDKAAIDMMVFYFSTAS 896

Query:   986 SYXXXXXXXXXXLYINPYWRRRWFYLVEVCMTS 1018
              Y          +  +  WRR W  +V+  + S
Sbjct:   897 IYVTALIGVLVLMCFDCPWRRAWLRIVDAFIAS 929

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 281/914 (30%), Positives = 418/914 (45%)

Query:   151 KFKGTVVNQKLHNFTNLE--ELILDESDLHVSQLLQSIASFTSLKHLSMQDCV-LKGALH 207
             ++KG   N+     T +    L L ++ L    LL       SL +LS   C  L   + 
Sbjct:    65 RWKGVACNRVSGRVTEISFGGLSLKDNSLLNLSLLHPFEDVRSL-NLSSSRCSGLFDDVE 123

Query:   208 GQDFL-KFKNLEYLDMGWVQVDVNTNFLQIVGESMPXXXXXXXXXXXXXKHTILDQGLCQ 266
             G   L K + LE LD+       N +    +  S                 +   + L  
Sbjct:   124 GYKSLRKLRKLEILDLA--SNKFNNSIFHFL--SAATSLTTLFLRSNNMDGSFPAKELRD 179

Query:   267 LVHLQGLYIRDNDLRDGLPWC-LANMTSLQVLYASSNQLTGN--------------ISPG 311
             L +L+ L +  N     +P   L+++  L+ L  S N+ +G+              I  G
Sbjct:   180 LTNLELLDLSRNRFNGSIPIQELSSLRKLKALDLSGNEFSGSMELQGKFCTDLLFSIQSG 239

Query:   312 LCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELI 371
             +CEL  +++L +  N L G LP CL +LT LRVLD+S N+LT  + SS L  L S+E L 
Sbjct:   240 ICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSS-LGSLQSLEYLS 298

Query:   372 LSNNHF---FQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDG 428
             L +N F   F    SL  L NL  L+  +   + Q  S   S  PKFQL+ I+L    + 
Sbjct:   299 LFDNDFEGSFSFG-SLANLSNLMVLKLCSKSSSLQVLSE-SSWKPKFQLSVIALRS-CNM 355

Query:   429 GTFPEFLYHQHDXXXXXXXXXXXXGEFPXXXXXXXXXXXXXXXXXXSLFGSFRMPIHSHQ 488
                P FL HQ D            G+ P                  +LF SF++P  +H 
Sbjct:   356 EKVPHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVLLLQN-NLFTSFQIPKSAHN 414

Query:   489 KLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQ 548
              L  LDV  N F    P  IG   P L  LN S+N F  ++PSS  +M  ++ +D+S N 
Sbjct:   415 -LLFLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNS 473

Query:   549 LTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSK 608
               G +P     GC+S+ IL LS+N+L G IF E  N TN++ L +D N F G+I + L  
Sbjct:   474 FHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTGKIGQGLRS 533

Query:   609 CYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNN 668
                L  L +S+N+L G IP W+G LP+L  +++ +N L+G IP+    + SL++LDLS N
Sbjct:   534 LINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSAN 593

Query:   669 SIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRL 728
             S+ G +P      +   + L  NK+ G +   +  N  +  LDL  N   G IP  I+ +
Sbjct:   594 SLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDTLLANVEI--LDLRNNRFSGKIPEFIN-I 650

Query:   729 PQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAP 788
               ++ LLL  N   G+IP QLC L  ++L+DLS+N L+G IP CL NTS   G+  E   
Sbjct:   651 QNISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSF--GFGKEC-- 706

Query:   789 TSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLT 848
             TS        + S    G S   + ++ +   + KN   Y++  +      +D      T
Sbjct:   707 TSYDYDFGISFPSDVFNGFS---LHQDFS---SNKNGGIYFKSLLTLDPLSMDYKAATQT 760

Query:   849 G-EIPTQIGY-------LTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 900
               E  T+  Y       L  +  ++LS N L+G IP  F  L ++ +L+LS+N L G IP
Sbjct:   761 KIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIP 820

Query:   901 PQLIVLNTLEVFKVAYNNLSGKIPDR----AQFSTFE--EDSYEG--------NPF---- 942
               +  +  +E F +++N L G+IP +       S F+   ++  G        N F    
Sbjct:   821 KSISSMEKMESFDLSFNRLQGRIPSQLTELTSLSVFKVSHNNLSGVIPQGRQFNTFDAES 880

Query:   943 LCGQPL--SKSCNDNGLTTVTPEASTENEGD-SLIDTDSFLITFTVSYXXXXXXXXXXLY 999
               G  L   +  N +       EA    E D S+ID  SF ++F  +Y          L 
Sbjct:   881 YFGNRLLCGQPTNRSCNNNSYEEADNGVEADESIIDMVSFYLSFAAAYVTILIGILASLS 940

Query:  1000 INPYWRRRWFYLVE 1013
              +  W R WFY V+
Sbjct:   941 FDSPWSRFWFYKVD 954

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 696 (250.1 bits), Expect = 3.1e-66, P = 3.1e-66
 Identities = 200/682 (29%), Positives = 321/682 (47%)

Query:   264 LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYI 323
             L  LV+L+ L + DN+L   +P    N+ +LQ+L  +S +LTG I      LV L+ L +
Sbjct:   140 LGSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIPSRFGRLVQLQTLIL 199

Query:   324 DNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFF-QIPI 382
              +N+L G +P  + N TSL +   ++N+L  ++ +  L  L +++ L L +N F  +IP 
Sbjct:   200 QDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAE-LNRLKNLQTLNLGDNSFSGEIPS 258

Query:   383 SLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDXX 442
              L  L ++  L     ++          LT    L ++ LS     G   E  +  +   
Sbjct:   259 QLGDLVSIQYLNLIGNQLQGLIPKR---LTELANLQTLDLSSNNLTGVIHEEFWRMNQLE 315

Query:   443 XXXXXXXXXXGEFPXXXXXXXXXXXXXXXXXXSLFGSFRMPIHSHQKLATLDVFNNFFQG 502
                       G  P                   L G     I + Q L  LD+ NN   G
Sbjct:   316 FLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTG 375

Query:   503 HIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCF 562
              IP  +   L  L  L L+ N+  G++ SS +++  L+   + +N L G++P+ +     
Sbjct:   376 QIPDSL-FQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGF-LG 433

Query:   563 SLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHL 622
              LEI+ L  NR  G +  E  N T L  +   GN   GEIP S+ +   L  L+L +N L
Sbjct:   434 KLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENEL 493

Query:   623 FGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLP-SCFSPA 681
              G IP  LGN   +  I + +N L G IP  F    +L++  + NNS+ G LP S  +  
Sbjct:   494 VGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLK 553

Query:   682 SIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYI 741
             ++ +++ S NK  G +  +   + +L + D++ N   G IP  + +   L+ L L  N  
Sbjct:   554 NLTRINFSSNKFNGSISPLCGSSSYL-SFDVTENGFEGDIPLELGKSTNLDRLRLGKNQF 612

Query:   742 KGEIPVQLCQLKEVRLIDLSHNNLSGRIPP----C--LVNTSLNEGYHGEVAPTSIWCRR 795
              G IP    ++ E+ L+D+S N+LSG IP     C  L +  LN  Y   V PT  W  +
Sbjct:   613 TGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPT--WLGK 670

Query:   796 ASVYRSACLPGQSSPPMGKEETVQFTTKN-MSYYYQGRILT-----------SMSGIDLS 843
               +     L   S+  +G   T  F+  N ++ +  G  L            +++ ++L 
Sbjct:   671 LPLLGELKL--SSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLE 728

Query:   844 CNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIES-LDLSYNLLHGKIPPQ 902
              N+L+G +P+ IG L+++  L LS N LTG IP     L+ ++S LDLSYN   G+IP  
Sbjct:   729 ENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPST 788

Query:   903 LIVLNTLEVFKVAYNNLSGKIP 924
             +  L  LE   +++N L G++P
Sbjct:   789 ISTLPKLESLDLSHNQLVGEVP 810

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 689 (247.6 bits), Expect = 2.4e-65, P = 2.4e-65
 Identities = 215/713 (30%), Positives = 337/713 (47%)

Query:   260 LDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLR 319
             + + L  LV+LQ L +    L   +P  L  +  +Q L    N L G I   L     L 
Sbjct:   159 IPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLT 218

Query:   320 KLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQ 379
                   N L G++P  L  L +L +L+++ N LT  I S  L  ++ ++ L L  N    
Sbjct:   219 VFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQ-LGEMSQLQYLSLMANQLQG 277

Query:   380 -IPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQ 438
              IP SL  L NL  L      +  +    + +++   QL  + L+     G+ P+ +   
Sbjct:   278 LIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMS---QLLDLVLANNHLSGSLPKSICSN 334

Query:   439 H-DXXXXXXXXXXXXGEFPXXXXXXXXXXXXXXXXXXSLFGSFRMPIHSHQKLATLDVFN 497
             + +            GE P                  SL GS    +    +L  L + N
Sbjct:   335 NTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNN-SLAGSIPEALFELVELTDLYLHN 393

Query:   498 NFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERM 557
             N  +G +   I   L  L  L L  N   G +P   + ++ LE L +  N+ +GEIP+ +
Sbjct:   394 NTLEGTLSPSISN-LTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEI 452

Query:   558 ATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYL 617
                C SL+++ +  N  +G I      L  L  L L  N  +G +P SL  C+ L  L L
Sbjct:   453 GN-CTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDL 511

Query:   618 SDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTL-PS 676
             +DN L G IP   G L  L+ +++ NN+L+G +P       +L  ++LS+N + GT+ P 
Sbjct:   512 ADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPL 571

Query:   677 CFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLL 736
             C S +S     ++ N  E  +   + ++ +L  L L  N L G IP  + ++ +L+ L +
Sbjct:   572 CGS-SSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDM 630

Query:   737 AHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTS------LNEGYHGEVAPTS 790
             + N + G IP+QL   K++  IDL++N LSG IPP L   S      L+     E  PT 
Sbjct:   631 SSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTE 690

Query:   791 IW-CRRASVYR--SACLPGQSSPPMGKEETVQFTTKNMSYYYQGRI------LTSMSGID 841
             ++ C +  V       L G     +G    +     + + +  G +      L+ +  + 
Sbjct:   691 LFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQF-SGSLPQAMGKLSKLYELR 749

Query:   842 LSCNKLTGEIPTQIGYLTRIH-ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 900
             LS N LTGEIP +IG L  +  AL+LS+NN TG IP+T   L ++E+LDLS+N L G++P
Sbjct:   750 LSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVP 809

Query:   901 PQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGQPLSKSCN 953
               +  + +L    V++NNL GK+  + QFS +  DS+ GN  LCG PLS+ CN
Sbjct:   810 GSVGDMKSLGYLNVSFNNLGGKL--KKQFSRWPADSFLGNTGLCGSPLSR-CN 859

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 667 (239.9 bits), Expect = 9.0e-65, P = 9.0e-65
 Identities = 190/553 (34%), Positives = 268/553 (48%)

Query:   484 IHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFAD-MKMLERL 542
             + ++ +L  L + NN F      ++ T +  L  L+ S N   G  P +F   +  L  +
Sbjct:   363 LENNPELEVLQLKNNSFT---IFQMPTSVHNLQVLDFSENNIGGLFPDNFGRVLPNLVHM 419

Query:   543 DISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKF--NLTNLMTLQLDGNNFIG 600
             + SNN   G  P  M    +++  L LS N L G +  + F  +  +L  LQL  N F G
Sbjct:   420 NGSNNGFQGNFPSSMGE-MYNISFLDLSYNNLSGEL-PQSFVSSCFSLSILQLSHNKFSG 477

Query:   601 EIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSL 660
                   +    L  L +++N   GKI   L  L  L  + M NN LEG +P      + L
Sbjct:   478 HFLPRQTNFTSLIVLRINNNLFTGKIGVGLLTLVDLCILDMSNNFLEGELPPLLLVFEYL 537

Query:   661 KILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGS 720
               LDLS N + G LPS  S  ++  +H   N   G +      +  +  LDL  N L G+
Sbjct:   538 NFLDLSGNLLSGALPSHVSLDNVLFLH--NNNFTGPIPDTFLGSIQI--LDLRNNKLSGN 593

Query:   721 IPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLN- 779
             IP  +D    +++LLL  N + G IP  LC+  ++RL+DLS N L+G IP C  N S   
Sbjct:   594 IPQFVDT-QDISFLLLRGNSLTGYIPSTLCEFSKMRLLDLSDNKLNGFIPSCFNNLSFGL 652

Query:   780 ------EGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGK--EETVQFTTKNMSYYYQG 831
                     Y+  VA  S +      Y+S  +            E  V+F TK     Y G
Sbjct:   653 ARKEEITNYYVAVALESFYL---GFYKSTFVVENFRLDYSNYFEIDVKFATKQRYDSYIG 709

Query:   832 RI------LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQI 885
                     L SM G+DLS N+L+G IP ++G L ++ ALNLSHN L+  IP +FS L+ I
Sbjct:   710 AFQFSEGTLNSMYGLDLSSNELSGVIPAELGDLFKLRALNLSHNFLSSHIPDSFSKLQDI 769

Query:   886 ESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCG 945
             ESLDLSYN+L G IP QL  L +L +F V+YNNLSG IP   QF+TF+E+SY GNP LCG
Sbjct:   770 ESLDLSYNMLQGSIPHQLTNLTSLAIFNVSYNNLSGIIPQGKQFNTFDENSYLGNPLLCG 829

Query:   946 QPLSKSCNDNGLTTVTPEASTENEGDSLIDTDSFLITFTVSYXXXXXXXXXXLYINPYWR 1005
              P   SC     +        E++ +  ID   F  +   +Y          + ++  WR
Sbjct:   830 PPTDTSCETKKNSEENANGGEEDDKEVAIDMLVFYWSTAGTYVTALIGILVLMCVDCSWR 889

Query:  1006 RRWFYLVEVCMTS 1018
             R W  LV+  + S
Sbjct:   890 RAWLRLVDAFIAS 902

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 657 (236.3 bits), Expect = 8.8e-62, P = 8.8e-62
 Identities = 208/682 (30%), Positives = 314/682 (46%)

Query:   297 LYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENI 356
             L  SS  L+G +SP +  LV L++L +  N L G +P  + N +SL +L ++ NQ    I
Sbjct:    78 LNLSSMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEI 137

Query:   357 SSSSLMHLTSIEELILSNNHFF-QIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKF 415
                 +  L S+E LI+ NN     +P+ +  L +LS+L T++  I+ Q      +L    
Sbjct:   138 PVE-IGKLVSLENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLK--- 193

Query:   416 QLTSISLSGYVDGGTFPEFLYHQHDXXXXXXXXXXXXGEFPXXXXXXXXXXXXXXXXXXS 475
             +LTS      +  G+ P  +                 GE P                   
Sbjct:   194 RLTSFRAGQNMISGSLPSEIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWEN-E 252

Query:   476 LFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFAD 535
               G     I +   L TL ++ N   G IP E+G  L  L  L L RN  NG+IP    +
Sbjct:   253 FSGFIPREISNCTSLETLALYKNQLVGPIPKELGD-LQSLEFLYLYRNGLNGTIPREIGN 311

Query:   536 MKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDG 595
             +     +D S N LTGEIP  +      LE+L L  N+L G I  E   L NL  L L  
Sbjct:   312 LSYAIEIDFSENALTGEIPLELGN-IEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSI 370

Query:   596 NNFIGEIPESLSKCYMLRGLY---LSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPI 652
             N   G IP  L   Y LRGL+   L  N L G IP  LG    L  + M +N+L G IP 
Sbjct:   371 NALTGPIP--LGFQY-LRGLFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPS 427

Query:   653 EFCQRDSLKILDLSNNSIFGTLPSCFSPA-SIEQVHLSKNKIEGRLESIIHDNPHLVTLD 711
               C   ++ IL+L  N++ G +P+  +   ++ Q+ L++N + GR  S +    ++  ++
Sbjct:   428 YLCLHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIE 487

Query:   712 LSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPP 771
             L  N   GSIP  +     L  L LA N   GE+P ++  L ++  +++S N L+G +P 
Sbjct:   488 LGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPS 547

Query:   772 CLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQG 831
              + N  +       +    + C   S      LP +    + + E ++ +  N+S     
Sbjct:   548 EIFNCKM-------LQRLDMCCNNFS----GTLPSEVGS-LYQLELLKLSNNNLSGTIPV 595

Query:   832 RI--LTSMSGIDLSCNKLTGEIPTQIGYLTRIH-ALNLSHNNLTGTIPTTFSNLKQIESL 888
              +  L+ ++ + +  N   G IP ++G LT +  ALNLS+N LTG IP   SNL  +E L
Sbjct:   596 ALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFL 655

Query:   889 DLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGQPL 948
              L+ N L G+IP     L++L  +  +YN+L+G IP     S     S+ GN  LCG PL
Sbjct:   656 LLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIPLLRNISM---SSFIGNEGLCGPPL 712

Query:   949 SKSCNDNGLTTVTPEASTENEG 970
             ++ C         P  ST   G
Sbjct:   713 NQ-CIQT--QPFAPSQSTGKPG 731

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00181059 hypothetical protein (781 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1037
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-60
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-59
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-59
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-46
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-42
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-25
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	5e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	7e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  223 bits (569), Expect = 3e-60
 Identities = 177/538 (32%), Positives = 261/538 (48%), Gaps = 52/538 (9%)

Query: 266 QLVHLQGLYIRDNDLRDGLPWCLANMT-SLQVLYASSNQLTGNISPGLCELVLLRKLYID 324
           +L ++Q + + +N L   +P  +   + SL+ L  S+N  TG+I  G   +  L  L + 
Sbjct: 91  RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG--SIPNLETLDLS 148

Query: 325 NNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFF-QIPIS 383
           NN L G +P  + + +SL+VLD+  N L   I +S L +LTS+E L L++N    QIP  
Sbjct: 149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRE 207

Query: 384 LEPLFNLSKL----QTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQH 439
           L  + +L  +       +GEI  +             LTS                    
Sbjct: 208 LGQMKSLKWIYLGYNNLSGEIPYEIG----------GLTS-------------------- 237

Query: 440 DLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNF 499
            LN ++L + NL+G  P+  L N  NL+ L L  N L G     I S QKL +LD+ +N 
Sbjct: 238 -LNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295

Query: 500 FQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMAT 559
             G IP E+   L  L  L+L  N F G IP +   +  L+ L + +N+ +GEIP+ +  
Sbjct: 296 LSGEIP-ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354

Query: 560 GCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSD 619
              +L +L LS N L G I     +  NL  L L  N+  GEIP+SL  C  LR + L D
Sbjct: 355 HN-NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413

Query: 620 NHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFS 679
           N   G++P     LP + ++ + NNNL+G I        SL++L L+ N  FG LP  F 
Sbjct: 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG 473

Query: 680 PASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHN 739
              +E + LS+N+  G +   +     L+ L LS N L G IP+ +    +L  L L+HN
Sbjct: 474 SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN 533

Query: 740 YIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCL--------VNTSLNEGYHGEVAPT 789
            + G+IP    ++  +  +DLS N LSG IP  L        VN S N   HG +  T
Sbjct: 534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH-LHGSLPST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  221 bits (564), Expect = 1e-59
 Identities = 167/507 (32%), Positives = 246/507 (48%), Gaps = 28/507 (5%)

Query: 446 LSHLNLSGEFPNW---LLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQG 502
           LS+ N S +   W      N++ + ++ L+  ++ G     I     + T+++ NN   G
Sbjct: 48  LSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG 107

Query: 503 HIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCF 562
            IP +I T    L  LNLS N F GSIP        LE LD+SNN L+GEIP  +  G F
Sbjct: 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSI--PNLETLDLSNNMLSGEIPNDI--GSF 163

Query: 563 S-LEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNH 621
           S L++L L  N L G I +   NLT+L  L L  N  +G+IP  L +   L+ +YL  N+
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223

Query: 622 LFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLP-SCFSP 680
           L G+IP  +G L +L ++ +  NNL GPIP       +L+ L L  N + G +P S FS 
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283

Query: 681 ASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNY 740
             +  + LS N + G +  ++    +L  L L  N+  G IP  +  LP+L  L L  N 
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 741 IKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTS-------LNEGYHGEVAPTSIWC 793
             GEIP  L +   + ++DLS NNL+G IP  L ++         +    GE+  +   C
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403

Query: 794 RRASVYR--SACLPGQSSPPMGKEETVQFTTKNMSYYYQGRI------LTSMSGIDLSCN 845
           R     R       G+      K   V F   + +   QGRI      + S+  + L+ N
Sbjct: 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDIS-NNNLQGRINSRKWDMPSLQMLSLARN 462

Query: 846 KLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIV 905
           K  G +P   G   R+  L+LS N  +G +P    +L ++  L LS N L G+IP +L  
Sbjct: 463 KFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS 521

Query: 906 LNTLEVFKVAYNNLSGKIPDRAQFSTF 932
              L    +++N LSG+IP  A FS  
Sbjct: 522 CKKLVSLDLSHNQLSGQIP--ASFSEM 546

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  219 bits (560), Expect = 4e-59
 Identities = 160/559 (28%), Positives = 247/559 (44%), Gaps = 79/559 (14%)

Query: 417 LTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSL 476
           L++  LSG +    F         L  +NLS+ N +G  P   +    NLETL L+NN L
Sbjct: 100 LSNNQLSGPIPDDIF----TTSSSLRYLNLSNNNFTGSIPRGSI---PNLETLDLSNNML 152

Query: 477 FGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADM 536
            G     I S   L  LD+  N   G IP  +   L  L  L L+ N   G IP     M
Sbjct: 153 SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN-LTSLEFLTLASNQLVGQIPRELGQM 211

Query: 537 KMLE------------------------RLDISNNQLTGEIPERMATGCFSLEILALSNN 572
           K L+                         LD+  N LTG IP  +     +L+ L L  N
Sbjct: 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQN 270

Query: 573 RLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGN 632
           +L G I    F+L  L++L L  N+  GEIPE + +   L  L+L  N+  GKIP  L +
Sbjct: 271 KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS 330

Query: 633 LPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCF-SPASIEQVHLSKN 691
           LP LQ + + +N   G IP    + ++L +LDLS N++ G +P    S  ++ ++ L  N
Sbjct: 331 LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390

Query: 692 KIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ 751
            +EG +   +     L  + L  NS  G +P+   +LP + +L +++N ++G I  +   
Sbjct: 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD 450

Query: 752 LKEVRLIDLSHNNLSGRIPPC-----LVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPG 806
           +  ++++ L+ N   G +P       L N  L+        P  +               
Sbjct: 451 MPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKL--------------- 495

Query: 807 QSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNL 866
                                      L+ +  + LS NKL+GEIP ++    ++ +L+L
Sbjct: 496 -------------------------GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530

Query: 867 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDR 926
           SHN L+G IP +FS +  +  LDLS N L G+IP  L  + +L    +++N+L G +P  
Sbjct: 531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590

Query: 927 AQFSTFEEDSYEGNPFLCG 945
             F      +  GN  LCG
Sbjct: 591 GAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  180 bits (457), Expect = 3e-46
 Identities = 158/505 (31%), Positives = 232/505 (45%), Gaps = 55/505 (10%)

Query: 290 NMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSY 349
           N + +  +  S   ++G IS  +  L  ++ + + NN L G +P            D+  
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPD-----------DIFT 115

Query: 350 NQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYD 409
                  +SSSL +L       LSNN+F    I    + NL  L   N   N  +    +
Sbjct: 116 -------TSSSLRYLN------LSNNNFTG-SIPRGSIPNLETLDLSN---NMLSGEIPN 158

Query: 410 SLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETL 469
            +     L  + L G V  G  P  L +   L  + L+   L G+ P  L +   +L+ +
Sbjct: 159 DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK-SLKWI 217

Query: 470 LLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSI 529
            L  N+L G     I     L  LD+  N   G IP  +G  L  L  L L +N  +G I
Sbjct: 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLSGPI 276

Query: 530 PSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLM 589
           P S   ++ L  LD+S+N L+GEIPE +     +LEIL L +N   G I     +L  L 
Sbjct: 277 PPSIFSLQKLISLDLSDNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQ 335

Query: 590 TLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGP 649
            LQL  N F GEIP++L K   L  L LS N+L G+IP  L +   L  +I+ +N+LEG 
Sbjct: 336 VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE 395

Query: 650 IPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQ-VHLSKNKIEGRLESIIHDNPHLV 708
           IP       SL+ + L +NS  G LPS F+   +   + +S N ++GR+ S   D P L 
Sbjct: 396 IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455

Query: 709 TLDLSYNS-----------------------LHGSIPNRIDRLPQLNYLLLAHNYIKGEI 745
            L L+ N                          G++P ++  L +L  L L+ N + GEI
Sbjct: 456 MLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI 515

Query: 746 PVQLCQLKEVRLIDLSHNNLSGRIP 770
           P +L   K++  +DLSHN LSG+IP
Sbjct: 516 PDELSSCKKLVSLDLSHNQLSGQIP 540

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  168 bits (427), Expect = 1e-42
 Identities = 193/681 (28%), Positives = 305/681 (44%), Gaps = 137/681 (20%)

Query: 3   ASLFTPFQQLESLDLSWNNIA------GCVQNESLERLSRLTNLKFLYLNDNHFNNSIFS 56
           +S+  P + L +    WN+ A      G   N S    SR+ ++    L+  + +  I S
Sbjct: 39  SSINDPLKYLSN----WNSSADVCLWQGITCNNS----SRVVSID---LSGKNISGKISS 87

Query: 57  SLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNT 116
           ++  L  ++ ++L++N+L+G I      + S+L  L+++ N         +F G      
Sbjct: 88  AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN---------NFTG------ 132

Query: 117 LYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESD 176
                  IPR          GS+P+L+TL LS+    G + N                  
Sbjct: 133 ------SIPR----------GSIPNLETLDLSNNMLSGEIPND----------------- 159

Query: 177 LHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQI 236
                    I SF+SLK L +   VL G +             L          TN    
Sbjct: 160 ---------IGSFSSLKVLDLGGNVLVGKIPN----------SL----------TN---- 186

Query: 237 VGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQV 296
               + SL FL+L ++ L      + G  Q+  L+ +Y+  N+L   +P+ +  +TSL  
Sbjct: 187 ----LTSLEFLTLASNQLVGQIPRELG--QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240

Query: 297 LYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENI 356
           L    N LTG I   L  L  L+ L++  N L G +P  + +L  L  LD+S N L+  I
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300

Query: 357 SSSSLMHLTSIEELILSNNHFF-QIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKF 415
               ++ L ++E L L +N+F  +IP++L  L  L  L                      
Sbjct: 301 -PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL---------------------- 337

Query: 416 QLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNS 475
           QL S   SG +     P+ L   ++L  ++LS  NL+GE P  L  ++ NL  L+L +NS
Sbjct: 338 QLWSNKFSGEI-----PKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLFKLILFSNS 391

Query: 476 LFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFAD 535
           L G     + + + L  + + +N F G +P E  T LP +  L++S N   G I S   D
Sbjct: 392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF-TKLPLVYFLDISNNNLQGRINSRKWD 450

Query: 536 MKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDG 595
           M  L+ L ++ N+  G +P+  + G   LE L LS N+  G +  +  +L+ LM L+L  
Sbjct: 451 MPSLQMLSLARNKFFGGLPD--SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508

Query: 596 NNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFC 655
           N   GEIP+ LS C  L  L LS N L G+IP     +P L  + +  N L G IP    
Sbjct: 509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG 568

Query: 656 QRDSLKILDLSNNSIFGTLPS 676
             +SL  +++S+N + G+LPS
Sbjct: 569 NVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  112 bits (281), Expect = 5e-25
 Identities = 88/277 (31%), Positives = 135/277 (48%), Gaps = 39/277 (14%)

Query: 660 LKILDLSNNSIFGTL-PSCFSPASIEQVHLSKNKIEGRL-ESIIHDNPHLVTLDLSYNSL 717
           +  +DLS  +I G +  + F    I+ ++LS N++ G + + I   +  L  L+LS N+ 
Sbjct: 71  VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130

Query: 718 HGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTS 777
            GSIP     +P L  L L++N + GEIP  +     ++++DL  N L G+IP  L N +
Sbjct: 131 TGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT 188

Query: 778 LNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSM 837
             E                    S  L GQ    +G+        K++ + Y G      
Sbjct: 189 SLEFL---------------TLASNQLVGQIPRELGQ-------MKSLKWIYLGY----- 221

Query: 838 SGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG 897
                  N L+GEIP +IG LT ++ L+L +NNLTG IP++  NLK ++ L L  N L G
Sbjct: 222 -------NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274

Query: 898 KIPPQLIVLNTLEVFKVAYNNLSGKIPDR-AQFSTFE 933
            IPP +  L  L    ++ N+LSG+IP+   Q    E
Sbjct: 275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLE 311

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 79.5 bits (196), Expect = 4e-15
 Identities = 53/179 (29%), Positives = 78/179 (43%), Gaps = 35/179 (19%)

Query: 837  MSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 896
            + G+ L    L G IP  I  L  + ++NLS N++ G IP +  ++  +E LDLSYN  +
Sbjct: 420  IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 897  GKIPPQLIVLNTLEVFKVAYNNLSGKIP--------DRAQFSTFEEDSYEGNPFLCGQPL 948
            G IP  L  L +L +  +  N+LSG++P         RA F      ++  N  LCG P 
Sbjct: 480  GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF------NFTDNAGLCGIP- 532

Query: 949  SKSCNDNGLTTVTPEASTENEGDSLIDTDSFLITFTVSYGIVIIGIIGVLYINPYWRRR 1007
                   GL    P  S               I F VS   + + I  +     +W+RR
Sbjct: 533  -------GLRACGPHLSV---------GAKIGIAFGVSVAFLFLVICAMC----WWKRR 571

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.0 bits (161), Expect = 7e-11
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 469 LLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGS 528
           L L N  L G     I   + L ++++  N  +G+IP  +G+ +  L  L+LS N+FNGS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS-ITSLEVLDLSYNSFNGS 481

Query: 529 IPSSFADMKMLERLDISNNQLTGEIP 554
           IP S   +  L  L+++ N L+G +P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 1e-09
 Identities = 32/91 (35%), Positives = 53/91 (58%)

Query: 683 IEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIK 742
           I+ + L    + G + + I    HL +++LS NS+ G+IP  +  +  L  L L++N   
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 743 GEIPVQLCQLKEVRLIDLSHNNLSGRIPPCL 773
           G IP  L QL  +R+++L+ N+LSGR+P  L
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.4 bits (149), Expect = 2e-09
 Identities = 32/86 (37%), Positives = 49/86 (56%)

Query: 591 LQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPI 650
           L LD     G IP  +SK   L+ + LS N + G IP  LG++ +L+ + +  N+  G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 651 PIEFCQRDSLKILDLSNNSIFGTLPS 676
           P    Q  SL+IL+L+ NS+ G +P+
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 6e-09
 Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 542 LDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGE 601
           L + N  L G IP  ++     L+ + LS N ++G+I     ++T+L  L L  N+F G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 602 IPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLP 634
           IPESL +   LR L L+ N L G++P  LG   
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.5 bits (139), Expect = 3e-08
 Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 2/86 (2%)

Query: 493 LDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGE 552
           L + N   +G IP +I + L  L  +NLS N+  G+IP S   +  LE LD+S N   G 
Sbjct: 423 LGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 553 IPERMATGCFSLEILALSNNRLQGHI 578
           IPE +     SL IL L+ N L G +
Sbjct: 482 IPESLGQ-LTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 3e-08
 Identities = 27/71 (38%), Positives = 40/71 (56%)

Query: 266 QLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDN 325
           +L HLQ + +  N +R  +P  L ++TSL+VL  S N   G+I   L +L  LR L ++ 
Sbjct: 440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499

Query: 326 NDLRGSLPLCL 336
           N L G +P  L
Sbjct: 500 NSLSGRVPAAL 510

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 55.0 bits (132), Expect = 1e-07
 Identities = 74/286 (25%), Positives = 117/286 (40%), Gaps = 15/286 (5%)

Query: 462 NNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLS 521
            N      L  N +   S    +     L +LD+ NN     IP  IG     L EL+LS
Sbjct: 90  LNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNI-TDIPPLIGLLKSNLKELDLS 148

Query: 522 RNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSE 581
            N    S+PS   ++  L+ LD+S N L+ ++P+ + +   +L  L LS N++       
Sbjct: 149 DNKI-ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLL-SNLSNLNNLDLSGNKIS--DLPP 203

Query: 582 KFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIM 641
           +  L + +      NN I E+  SLS    L GL LS+N     +P  +GNL  L+ + +
Sbjct: 204 EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLDL 262

Query: 642 PNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPS----CFSPASIEQVHLSKNKIEGRL 697
            NN +     +      +L+ LDLS NS+   LP           +  + L+   +E +L
Sbjct: 263 SNNQISSISSLG--SLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKL 320

Query: 698 ESIIHDN--PHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYI 741
            SI+ +N                    N +  L         + YI
Sbjct: 321 NSILLNNNILSNGETSSPEALSILESLNNLWTLDNALDESNLNRYI 366

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.9 bits (127), Expect = 7e-07
 Identities = 32/85 (37%), Positives = 45/85 (52%)

Query: 567 LALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKI 626
           L L N  L+G I ++   L +L ++ L GN+  G IP SL     L  L LS N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 627 PRWLGNLPTLQYIIMPNNNLEGPIP 651
           P  LG L +L+ + +  N+L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.4 bits (123), Expect = 2e-06
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 604 ESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKIL 663
           +S    + + GL L +  L G IP  +  L  LQ I +  N++ G IP       SL++L
Sbjct: 412 DSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVL 471

Query: 664 DLSNNSIFGTLPSCFSP-ASIEQVHLSKNKIEGRL 697
           DLS NS  G++P       S+  ++L+ N + GR+
Sbjct: 472 DLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 3e-06
 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 4/70 (5%)

Query: 9   FQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLS 68
            + L+S++LS N+I G +       L  +T+L+ L L+ N FN SI  SLG L+SLR L+
Sbjct: 441 LRHLQSINLSGNSIRGNIPPS----LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496

Query: 69  LADNRLNGSI 78
           L  N L+G +
Sbjct: 497 LNGNSLSGRV 506

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.0 bits (119), Expect = 4e-06
 Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 5/183 (2%)

Query: 584 NLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPN 643
           NL  L +L L+ N     I E L +   L  L L +N++   IP  +G L +    +  +
Sbjct: 91  NLLPLPSLDLNLNRLRSNISE-LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLS 148

Query: 644 NNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHD 703
           +N    +P       +LK LDLS N +        + +++  + LS NKI   L   I  
Sbjct: 149 DNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL 207

Query: 704 NPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHN 763
              L  LDLS NS+   + + +  L  L+ L L++N ++ ++P  +  L  +  +DLS+N
Sbjct: 208 LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNN 265

Query: 764 NLS 766
            +S
Sbjct: 266 QIS 268

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.8 bits (107), Expect = 4e-06
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 318 LRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHF 377
           L+ L + NN L          L +L+VLD+S N LT  IS  +   L S+  L LS N+ 
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTS-ISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 49.7 bits (119), Expect = 5e-06
 Identities = 61/277 (22%), Positives = 92/277 (33%), Gaps = 57/277 (20%)

Query: 513 PGLMELNLSRNAFNGSIPSSFADMKM-------LERLDISNNQLTGEIPERMA--TGCFS 563
           P L EL LS N   G IP     +         L+ LD+S+N L  +    +       S
Sbjct: 51  PSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSS 109

Query: 564 LEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLF 623
           L+ L L+NN L       +     L  L                    L  L L  N L 
Sbjct: 110 LQELKLNNNGLGDRG--LRLLAKGLKDLPPA-----------------LEKLVLGRNRLE 150

Query: 624 GKIPRWLGNL----PTLQYIIMPNNNLEGPIPIEFCQ----RDSLKILDLSNNSIF---- 671
           G     L         L+ + + NN +         +      +L++LDL+NN +     
Sbjct: 151 GASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210

Query: 672 ----GTLPSCFSPASIEQVHLSKNKIEGR-----LESIIHDNPHLVTLDLSYNSLH---- 718
                TL S     S+E ++L  N +          +++  N  L+TL LS N +     
Sbjct: 211 SALAETLAS---LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA 267

Query: 719 GSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEV 755
             +   +     L  L L  N    E    L +    
Sbjct: 268 KDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLE 304

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 25/56 (44%), Positives = 30/56 (53%)

Query: 840 IDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 895
           +DLS N+LT         L  +  L+LS NNLT   P  FS L  + SLDLS N L
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 47.7 bits (113), Expect = 2e-05
 Identities = 53/203 (26%), Positives = 90/203 (44%), Gaps = 4/203 (1%)

Query: 563 SLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHL 622
           ++  LAL+ +     +     +    + L         +  E+L     L  L L+ N L
Sbjct: 46  AVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRL 105

Query: 623 FGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPAS 682
              I   L  L  L  + + NNN+    P+    + +LK LDLS+N I        +  +
Sbjct: 106 RSNISELL-ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPN 164

Query: 683 IEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIK 742
           ++ + LS N +   L  ++ +  +L  LDLS N +   +P  I+ L  L  L L++N I 
Sbjct: 165 LKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII 222

Query: 743 GEIPVQLCQLKEVRLIDLSHNNL 765
            E+   L  LK +  ++LS+N L
Sbjct: 223 -ELLSSLSNLKNLSGLELSNNKL 244

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 8e-05
 Identities = 29/88 (32%), Positives = 48/88 (54%)

Query: 272 GLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGS 331
           GL + +  LR  +P  ++ +  LQ +  S N + GNI P L  +  L  L +  N   GS
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 332 LPLCLANLTSLRVLDVSYNQLTENISSS 359
           +P  L  LTSLR+L+++ N L+  + ++
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 514 GLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNR 573
            L  L+LS N        +F  +  L+ LD+S N LT  I     +G  SL  L LS N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 574 L 574
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 39 NLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNA 98
          NLK L L++N        +  GL +L+ L L+ N L  SI  +  + L +L  LD++GN 
Sbjct: 1  NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 99 I 99
          +
Sbjct: 60 L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 63  SLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGS 122
           +L+ L L++NRL   I       L NL+ LD++GN +   + P+ F GL  L +L L G+
Sbjct: 1   NLKSLDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGN 58

Query: 123 GI 124
            +
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 5e-04
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query: 441 LNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFF 500
           ++ + L +  L G  PN  +    +L+++ L+ NS+ G+    + S   L  LD+  N F
Sbjct: 420 IDGLGLDNQGLRGFIPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 501 QGHIPVEIGTYLPGLMELNLSRNAFNGSIPSS 532
            G IP  +G  L  L  LNL+ N+ +G +P++
Sbjct: 479 NGSIPESLGQ-LTSLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 28/61 (45%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 563 SLEILALSNNRLQGHIFSEKF-NLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNH 621
           +L+ L LSNNRL   I    F  L NL  L L GNN     PE+ S    LR L LS N+
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 622 L 622
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.7 bits (101), Expect = 7e-04
 Identities = 37/153 (24%), Positives = 58/153 (37%), Gaps = 11/153 (7%)

Query: 12  LESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNN----SIFSSLGGLSSLRHL 67
           LE L L  N + G       + L    +LK L L +N   +    ++   L    +L  L
Sbjct: 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVL 198

Query: 68  SLADNRLN--GSIDIKG-LNSLSNLEELDMTGNAIENL----VVPKDFRGLRKLNTLYLG 120
            L +N L   G+  +   L SL +LE L++  N + +     +          L TL L 
Sbjct: 199 DLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS 258

Query: 121 GSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFK 153
            + I       + + +    SL  L L   KF 
Sbjct: 259 CNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.9 bits (101), Expect = 8e-04
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIP 876
           +TS+  +DLS N   G IP  +G LT +  LNL+ N+L+G +P
Sbjct: 465 ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.9 bits (101), Expect = 0.001
 Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 34  LSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELD 93
           +S+L +L+ + L+ N    +I  SLG ++SL  L L+ N  NGSI  + L  L++L  L+
Sbjct: 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-ESLGQLTSLRILN 496

Query: 94  MTGNAI 99
           + GN++
Sbjct: 497 LNGNSL 502

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 489 KLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQ 548
            L +LD+ NN     IP      LP L  L+LS N      P +F+ +  L  LD+S N 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 549 L 549
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 18/56 (32%), Positives = 26/56 (46%)

Query: 686 VHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYI 741
           + LS N++    +      P+L  LDLS N+L    P     LP L  L L+ N +
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.5 bits (97), Expect = 0.002
 Identities = 65/258 (25%), Positives = 104/258 (40%), Gaps = 37/258 (14%)

Query: 315 LVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSN 374
           L+ L  L ++ N LR ++   L  LT+L  LD+  N +T+      L+   +++EL LS+
Sbjct: 92  LLPLPSLDLNLNRLRSNISE-LLELTNLTSLDLDNNNITDIPPLIGLLKS-NLKELDLSD 149

Query: 375 NHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEF 434
           N    +P  L  L NL  L          + +    L       S               
Sbjct: 150 NKIESLPSPLRNLPNLKNLDL--------SFNDLSDLPKLLSNLSN-------------- 187

Query: 435 LYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLD 494
                 LN+++LS   +S + P   +E  + LE L L+NNS+       + + + L+ L+
Sbjct: 188 ------LNNLDLSGNKIS-DLPP-EIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLE 238

Query: 495 VFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIP 554
           + NN  +     E    L  L  L+LS N    S  SS   +  L  LD+S N L+  +P
Sbjct: 239 LSNNKLED--LPESIGNLSNLETLDLSNN--QISSISSLGSLTNLRELDLSGNSLSNALP 294

Query: 555 ERMATGCFSLEILALSNN 572
                      +L L   
Sbjct: 295 LIALLLLLLELLLNLLLT 312

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 18/60 (30%), Positives = 26/60 (43%)

Query: 587 NLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNL 646
           NL +L L  N        +      L+ L LS N+L    P     LP+L+ + +  NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 22/60 (36%), Positives = 28/60 (46%)

Query: 706 HLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNL 765
           +L +LDLS N L          LP L  L L+ N +    P     L  +R +DLS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1037
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.93
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.67
PLN03150	623	hypothetical protein; Provisional	99.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.63
PLN03150	623	hypothetical protein; Provisional	99.34
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.23
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.17
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.15
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.13
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.13
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.05
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.03
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.01
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.01
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.99
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.84
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.78
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.77
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.76
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.71
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.7
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.64
KOG4341	483	consensus F-box protein containing LRR [General fu	98.64
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.62
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.61
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.52
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.43
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.43
KOG4341	483	consensus F-box protein containing LRR [General fu	98.39
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.32
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.32
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.29
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.0
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.94
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.93
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.77
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.73
PRK15386	426	type III secretion protein GogB; Provisional	97.73
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.68
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.59
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.43
PRK15386	426	type III secretion protein GogB; Provisional	97.41
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.34
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.29
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.21
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.03
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.97
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.91
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.7
KOG4308	478	consensus LRR-containing protein [Function unknown	96.38
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.31
KOG4308	478	consensus LRR-containing protein [Function unknown	96.0
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.82
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.56
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.28
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.87
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.73
smart00370	26	LRR Leucine-rich repeats, outliers.	88.73
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	87.9
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	87.85
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.59
smart00370	26	LRR Leucine-rich repeats, outliers.	87.59
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.34
KOG3864	221	consensus Uncharacterized conserved protein [Funct	85.37

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.6e-63  Score=629.17  Aligned_cols=541  Identities=35%  Similarity=0.506  Sum_probs=481.1

Q ss_pred             CCCCEEECcCCccCcCCCccccCCCCCCEEECcCCCCCCCcchhcc-CCCCCCEEEccCCcCCcccChhhhcCCCCCCEE
Q 001653          292 TSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLA-NLTSLRVLDVSYNQLTENISSSSLMHLTSIEEL  370 (1037)
Q Consensus       292 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L  370 (1037)
                      .+++.|+|++|.+.+.++..|..+++|++|+|++|++.+.+|..+. .+++|++|++++|.+++.+|.   ..+++|++|
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L  145 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETL  145 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEE
Confidence            4678888888888887777888888888888888888776776544 778888888888887765654   345667777


Q ss_pred             EccCCcccccccCcccccCCCCcceeeCCCcccccccccCCCCccceeEEEccccccCCCCchhhhcCCCCCEEEcCCCC
Q 001653          371 ILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLN  450 (1037)
Q Consensus       371 ~L~~n~l~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~  450 (1037)
                      ++++|.+                                                  .+.+|..+..+++|++|++++|.
T Consensus       146 ~Ls~n~~--------------------------------------------------~~~~p~~~~~l~~L~~L~L~~n~  175 (968)
T PLN00113        146 DLSNNML--------------------------------------------------SGEIPNDIGSFSSLKVLDLGGNV  175 (968)
T ss_pred             ECcCCcc--------------------------------------------------cccCChHHhcCCCCCEEECccCc
Confidence            7766655                                                  33356677778888888888888


Q ss_pred             CcccCchhHhhcCCCCcEEEccCCccccCCccCccCCCCcCEEEccCCcCcccCChhhhhCCCCCcEEECcCCcCCCCCC
Q 001653          451 LSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIP  530 (1037)
Q Consensus       451 l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  530 (1037)
                      +.+.+|..+ .++++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|
T Consensus       176 l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p  253 (968)
T PLN00113        176 LVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIP  253 (968)
T ss_pred             ccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccC
Confidence            888888775 67888888888888888888888888899999999999998888887765 7899999999999998999


Q ss_pred             ccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccCccccccCcccccCCCCCcEEECcCCcCCCCCCccccCCC
Q 001653          531 SSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCY  610 (1037)
Q Consensus       531 ~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  610 (1037)
                      ..++++++|+.|++++|.+.+.+|..+. .+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..++
T Consensus       254 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~  332 (968)
T PLN00113        254 SSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP  332 (968)
T ss_pred             hhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCC
Confidence            9999999999999999999888888775 489999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCccCCcccccCCCCCCEEECcCCcCcccCCCCCC-cCccCeEEcc
Q 001653          611 MLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFS-PASIEQVHLS  689 (1037)
Q Consensus       611 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~L~  689 (1037)
                      +|+.|++++|.+.+.+|..++.+++|+.|++++|++.+.+|..++.+.+|+.|++++|++.+.+|..+. +++|+.|+++
T Consensus       333 ~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~  412 (968)
T PLN00113        333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ  412 (968)
T ss_pred             CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECc
Confidence            999999999999999999999999999999999999999999999999999999999999998888765 7899999999


Q ss_pred             CccccCcchhhhcCCCCccEEEcCCCcCCCCCchhhcCCCCCcEEecccccccccCchhhcCCCCccEEEccCCcCcCcC
Q 001653          690 KNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRI  769 (1037)
Q Consensus       690 ~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~i  769 (1037)
                      +|.+++..|..+..+++|+.||+++|.+++.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.||+++|+++|.+
T Consensus       413 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~  491 (968)
T PLN00113        413 DNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAV  491 (968)
T ss_pred             CCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCcc
Confidence            999999999999999999999999999999999999999999999999999999888766 4589999999999999988


Q ss_pred             CCccccCCcCcCCCCCCCCccccccccccccccCCCCCCCCCCCccceEEEeecCccccccccccccccEEEccCCcccc
Q 001653          770 PPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG  849 (1037)
Q Consensus       770 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g  849 (1037)
                      |..+.++                                                          +.|+.|||++|+++|
T Consensus       492 ~~~~~~l----------------------------------------------------------~~L~~L~Ls~N~l~~  513 (968)
T PLN00113        492 PRKLGSL----------------------------------------------------------SELMQLKLSENKLSG  513 (968)
T ss_pred             Chhhhhh----------------------------------------------------------hccCEEECcCCccee
Confidence            8766543                                                          378899999999999


Q ss_pred             cCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcCcccccCCCCCCeEecCCCcceecCCCCCCC
Q 001653          850 EIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQF  929 (1037)
Q Consensus       850 ~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~~~~l~~L~~l~ls~N~l~g~ip~~~~~  929 (1037)
                      .+|..++.+++|++|+|++|.++|.+|..|+++++|+.|||++|+++|.+|..+..+++|+.+++++|+++|.+|+.++|
T Consensus       514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~  593 (968)
T PLN00113        514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAF  593 (968)
T ss_pred             eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccccCCCCCCCCC
Q 001653          930 STFEEDSYEGNPFLCGQP  947 (1037)
Q Consensus       930 ~~~~~~~~~gNp~lc~~~  947 (1037)
                      .++...++.|||++||.+
T Consensus       594 ~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        594 LAINASAVAGNIDLCGGD  611 (968)
T ss_pred             cccChhhhcCCccccCCc
Confidence            999999999999999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2e-57  Score=576.67  Aligned_cols=535  Identities=33%  Similarity=0.479  Sum_probs=430.9

Q ss_pred             ccccEEEccCCCCCCCcchhhcCCCCCCEEECcCCccCcCCCcccc-CCCCCCEEECcCCCCCCCcchhccCCCCCCEEE
Q 001653          268 VHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLC-ELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLD  346 (1037)
Q Consensus       268 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  346 (1037)
                      .+++.|++++|.+.+.++..+..+++|++|+|++|++.+.+|..+. .+++|++|++++|.+++.+|.  +.+++|++|+
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~  146 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD  146 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence            4688888888888888888888899999999999988877777654 888999999999988877774  4678899999


Q ss_pred             ccCCcCCcccChhhhcCCCCCCEEEccCCcccccccCcccccCCCCcceeeCCCcccccccccCCCCccceeEEEccccc
Q 001653          347 VSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYV  426 (1037)
Q Consensus       347 Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  426 (1037)
                      +++|.+.+.+|. .+..+++|++|++++|.+. .                                              
T Consensus       147 Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~l~-~----------------------------------------------  178 (968)
T PLN00113        147 LSNNMLSGEIPN-DIGSFSSLKVLDLGGNVLV-G----------------------------------------------  178 (968)
T ss_pred             CcCCcccccCCh-HHhcCCCCCEEECccCccc-c----------------------------------------------
Confidence            999988876775 6888888888888888761 1                                              


Q ss_pred             cCCCCchhhhcCCCCCEEEcCCCCCcccCchhHhhcCCCCcEEEccCCccccCCccCccCCCCcCEEEccCCcCcccCCh
Q 001653          427 DGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPV  506 (1037)
Q Consensus       427 ~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  506 (1037)
                         .+|..+..+++|++|++++|.+.+.+|..+ +.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|.
T Consensus       179 ---~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  254 (968)
T PLN00113        179 ---KIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS  254 (968)
T ss_pred             ---cCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh
Confidence               134555556666666666666666666554 4566666666666666666666666677777777777777766666


Q ss_pred             hhhhCCCCCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccCccccccCcccccCCC
Q 001653          507 EIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLT  586 (1037)
Q Consensus       507 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  586 (1037)
                      .+.. +++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+. .+++|+.|++++|.+.+..|..+..++
T Consensus       255 ~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~  332 (968)
T PLN00113        255 SLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI-QLQNLEILHLFSNNFTGKIPVALTSLP  332 (968)
T ss_pred             hHhC-CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc-CCCCCcEEECCCCccCCcCChhHhcCC
Confidence            6554 66777777777777777777777777888888888877777766553 477788888888888777777777888


Q ss_pred             CCcEEECcCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCccCCcccccCCCCCCEEECc
Q 001653          587 NLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLS  666 (1037)
Q Consensus       587 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls  666 (1037)
                      +|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|.++..+++|+.|++++|++.+.+|..+..+++|+.|+++
T Consensus       333 ~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~  412 (968)
T PLN00113        333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ  412 (968)
T ss_pred             CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECc
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCcCcccCCCCCC-cCccCeEEccCccccCcchhhhcCCCCccEEEcCCCcCCCCCchhhcCCCCCcEEecccccccccC
Q 001653          667 NNSIFGTLPSCFS-PASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEI  745 (1037)
Q Consensus       667 ~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  745 (1037)
                      +|++++..|..+. ++.|+.|++++|.+++.++..+..+++|+.|++++|.+.+.+|..+. .++|+.|++++|++.+.+
T Consensus       413 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~~L~~L~ls~n~l~~~~  491 (968)
T PLN00113        413 DNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAV  491 (968)
T ss_pred             CCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-cccceEEECcCCccCCcc
Confidence            8888887777665 67888888888888888888888889999999999999988887664 588999999999999999


Q ss_pred             chhhcCCCCccEEEccCCcCcCcCCCccccCCcCcCCCCCCCCccccccccccccccCCCCCCCCCCCccceEEEeecCc
Q 001653          746 PVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNM  825 (1037)
Q Consensus       746 p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  825 (1037)
                      |..+.++++|+.|++++|+++|.+|..+..+                                                 
T Consensus       492 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-------------------------------------------------  522 (968)
T PLN00113        492 PRKLGSLSELMQLKLSENKLSGEIPDELSSC-------------------------------------------------  522 (968)
T ss_pred             ChhhhhhhccCEEECcCCcceeeCChHHcCc-------------------------------------------------
Confidence            9999999999999999999999998776553                                                 


Q ss_pred             cccccccccccccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcCcccccC
Q 001653          826 SYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIV  905 (1037)
Q Consensus       826 ~~~~~~~~l~~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~~~~  905 (1037)
                               +.|+.|||++|.++|.+|..++.+++|+.|+|++|+++|.+|..+.++++|+.||+++|+++|.+|.. +.
T Consensus       523 ---------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~  592 (968)
T PLN00113        523 ---------KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GA  592 (968)
T ss_pred             ---------cCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-ch
Confidence                     37889999999999999999999999999999999999999999999999999999999999999964 33


Q ss_pred             CCCCCeEecCCCc
Q 001653          906 LNTLEVFKVAYNN  918 (1037)
Q Consensus       906 l~~L~~l~ls~N~  918 (1037)
                      ...+....+.+|.
T Consensus       593 ~~~~~~~~~~~n~  605 (968)
T PLN00113        593 FLAINASAVAGNI  605 (968)
T ss_pred             hcccChhhhcCCc
Confidence            3344444556665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=6.3e-38  Score=330.77  Aligned_cols=367  Identities=24%  Similarity=0.257  Sum_probs=295.3

Q ss_pred             CCEEECcCCccCcCCCccccCCCCCCEEECcCCCCCCCcchhccCCCCCCEEEccCCcCCcccChhhhcCCCCCCEEEcc
Q 001653          294 LQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILS  373 (1037)
Q Consensus       294 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~  373 (1037)
                      -+.||+++|++....+..|.++++|+++++.+|.++ .+|...+...+|+.|+|.+|.|+. +....+..++.|++|||+
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~s-v~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISS-VTSEELSALPALRSLDLS  157 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeecccccc-ccHHHHHhHhhhhhhhhh
Confidence            345777777777666666667777777777777666 455544444557777777776654 555566666666666666


Q ss_pred             CCcccccccCcccccCCCCcceeeCCCcccccccccCCCCccceeEEEccccccCCCCchhhhcCCCCCEEEcCCCCCcc
Q 001653          374 NNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSG  453 (1037)
Q Consensus       374 ~n~l~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~  453 (1037)
                      .|.+..++.+                                                                      
T Consensus       158 rN~is~i~~~----------------------------------------------------------------------  167 (873)
T KOG4194|consen  158 RNLISEIPKP----------------------------------------------------------------------  167 (873)
T ss_pred             hchhhcccCC----------------------------------------------------------------------
Confidence            6666443321                                                                      


Q ss_pred             cCchhHhhcCCCCcEEEccCCccccCCccCccCCCCcCEEEccCCcCcccCChhhhhCCCCCcEEECcCCcCCCCCCccc
Q 001653          454 EFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSF  533 (1037)
Q Consensus       454 ~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  533 (1037)
                           -+-.-.++++|+|++|+++......|.++.+|..|.++.|.++ .+|...|..+|+|+.|+|..|.+.-..-..|
T Consensus       168 -----sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltF  241 (873)
T KOG4194|consen  168 -----SFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTF  241 (873)
T ss_pred             -----CCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhh
Confidence                 1112245666666666666666667777778888888888887 8888888889999999999999885546679


Q ss_pred             cCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccCccccccCcccccCCCCCcEEECcCCcCCCCCCccccCCCCCC
Q 001653          534 ADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLR  613 (1037)
Q Consensus       534 ~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~  613 (1037)
                      .++++|+.|.+..|.+. .+.+..|.++.++++|+|+.|+++..-...+.+++.|+.|++++|.+..+-++.++.+++|+
T Consensus       242 qgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~  320 (873)
T KOG4194|consen  242 QGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLK  320 (873)
T ss_pred             cCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccce
Confidence            99999999999999998 88888999999999999999999988888999999999999999999998899999999999


Q ss_pred             EEeccCCccCCCCCcccCCCCCCCEEECCCCcCccCCcccccCCCCCCEEECcCCcCcccCCCCC---C-cCccCeEEcc
Q 001653          614 GLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCF---S-PASIEQVHLS  689 (1037)
Q Consensus       614 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~---~-~~~L~~L~L~  689 (1037)
                      +|+|++|+|+...+..|..+..|++|.|++|.++.....+|..+++|++|||++|.++..+.+..   . +++|+.|.+.
T Consensus       321 ~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~  400 (873)
T KOG4194|consen  321 ELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLT  400 (873)
T ss_pred             eEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeec
Confidence            99999999998888899999999999999999987777889999999999999999987766532   2 7899999999


Q ss_pred             CccccCcchhhhcCCCCccEEEcCCCcCCCCCchhhcCCCCCcEEeccccc
Q 001653          690 KNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNY  740 (1037)
Q Consensus       690 ~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  740 (1037)
                      +|++..+...+|.++.+|+.|||.+|.|..+-|++|..+ .|+.|.+..-.
T Consensus       401 gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSss  450 (873)
T KOG4194|consen  401 GNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSS  450 (873)
T ss_pred             CceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccc
Confidence            999999888999999999999999999998889999988 88888876533

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.1e-39  Score=329.50  Aligned_cols=476  Identities=27%  Similarity=0.395  Sum_probs=307.6

Q ss_pred             ccccEEEccCCCCCCCcchhhcCCCCCCEEECcCCccCcCCCccccCCCCCCEEECcCCCCCCCcchhccCCCCCCEEEc
Q 001653          268 VHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDV  347 (1037)
Q Consensus       268 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  347 (1037)
                      ..|+.+.+++|.+.. +.+.+.++..|.+|++++|++. ..|++++.+..++.++.++|+++ .+|+.++.+.+|+.+++
T Consensus        45 v~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC  121 (565)
T ss_pred             cchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence            456777777777765 3334677777777777777777 56667777777777777777776 56667777777777777


Q ss_pred             cCCcCCcccChhhhcCCCCCCEEEccCCcccccccCcccccCCCCcceeeCCCcccccccccCCCCccceeEEEcccccc
Q 001653          348 SYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVD  427 (1037)
Q Consensus       348 s~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  427 (1037)
                      ++|.+.. +++ .++.+..|+.++..+|++.+.                                               
T Consensus       122 s~n~~~e-l~~-~i~~~~~l~dl~~~~N~i~sl-----------------------------------------------  152 (565)
T KOG0472|consen  122 SSNELKE-LPD-SIGRLLDLEDLDATNNQISSL-----------------------------------------------  152 (565)
T ss_pred             cccceee-cCc-hHHHHhhhhhhhccccccccC-----------------------------------------------
Confidence            7777754 554 566666677777766666332                                               


Q ss_pred             CCCCchhhhcCCCCCEEEcCCCCCcccCchhHhhcCCCCcEEEccCCccccCCccCccCCCCcCEEEccCCcCcccCChh
Q 001653          428 GGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVE  507 (1037)
Q Consensus       428 ~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  507 (1037)
                          |..+..+.++..+++.+|++. ..|+... +++.|+.++..                        .|.+. .+|++
T Consensus       153 ----p~~~~~~~~l~~l~~~~n~l~-~l~~~~i-~m~~L~~ld~~------------------------~N~L~-tlP~~  201 (565)
T KOG0472|consen  153 ----PEDMVNLSKLSKLDLEGNKLK-ALPENHI-AMKRLKHLDCN------------------------SNLLE-TLPPE  201 (565)
T ss_pred             ----chHHHHHHHHHHhhccccchh-hCCHHHH-HHHHHHhcccc------------------------hhhhh-cCChh
Confidence                333444445556666666665 3333222 24444444444                        44443 56666


Q ss_pred             hhhCCCCCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccCccccccCcccccCCCC
Q 001653          508 IGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTN  587 (1037)
Q Consensus       508 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  587 (1037)
                      ++. +.+|+.|++..|++. ..| .|.++..|+++.++.|++. .+|......+.++.+||+.+|+++ ..|+.+.-+.+
T Consensus       202 lg~-l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrs  276 (565)
T KOG0472|consen  202 LGG-LESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRS  276 (565)
T ss_pred             hcc-hhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhh
Confidence            554 456666666666665 344 5666666666666666665 666666666666666666666666 35566666666


Q ss_pred             CcEEECcCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCC-----CCCCCE----EECCCC---cC-ccC-Ccc-
Q 001653          588 LMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGN-----LPTLQY----IIMPNN---NL-EGP-IPI-  652 (1037)
Q Consensus       588 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~----L~L~~n---~l-~~~-~~~-  652 (1037)
                      |++||+++|.++ .+|..++++ .|+.|-+.+|.+...-.+.+..     ++.|+.    =.++.-   .- .+. .+. 
T Consensus       277 L~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~  354 (565)
T KOG0472|consen  277 LERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSES  354 (565)
T ss_pred             hhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCc
Confidence            666666666666 345566666 6666666666653111010000     001110    000000   00 000 111 


Q ss_pred             --cccCCCCCCEEECcCCcCcccCCCCCCcC---ccCeEEccCccccCcchhhhcCCCCc-cEEEcCCCcCCCCCchhhc
Q 001653          653 --EFCQRDSLKILDLSNNSIFGTLPSCFSPA---SIEQVHLSKNKIEGRLESIIHDNPHL-VTLDLSYNSLHGSIPNRID  726 (1037)
Q Consensus       653 --~~~~~~~L~~L~ls~n~l~~~~~~~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~L-~~L~Ls~N~l~~~~~~~~~  726 (1037)
                        ......+.++|++++-+++....+.|...   -.+..+++.|++.. +|..+..++.+ +.+++++|.++ .+|..+.
T Consensus       355 ~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~e-lPk~L~~lkelvT~l~lsnn~is-fv~~~l~  432 (565)
T KOG0472|consen  355 FPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCE-LPKRLVELKELVTDLVLSNNKIS-FVPLELS  432 (565)
T ss_pred             ccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhh-hhhhhHHHHHHHHHHHhhcCccc-cchHHHH
Confidence              12234567788888888886665666532   37778888888874 44455544444 44566777666 7888889


Q ss_pred             CCCCCcEEecccccccccCchhhcCCCCccEEEccCCcCcCcCCCccccCCcCcCCCCCCCCccccccccccccccCCCC
Q 001653          727 RLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPG  806 (1037)
Q Consensus       727 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  806 (1037)
                      .+++|..|+|++|.+. .+|..++.+..|+.||+|.|+|. .+|.|+...                              
T Consensus       433 ~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~l------------------------------  480 (565)
T KOG0472|consen  433 QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYEL------------------------------  480 (565)
T ss_pred             hhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhH------------------------------
Confidence            9999999999999888 89999999999999999999886 555554221                              


Q ss_pred             CCCCCCCccceEEEeecCccccccccccccccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCC
Q 001653          807 QSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIE  886 (1037)
Q Consensus       807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~  886 (1037)
                                                  ..+..+--++|++...-|..++++.+|..|||.+|.+. .||..++++++|+
T Consensus       481 ----------------------------q~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~  531 (565)
T KOG0472|consen  481 ----------------------------QTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLR  531 (565)
T ss_pred             ----------------------------HHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccccee
Confidence                                        12333444568887666666999999999999999999 8999999999999


Q ss_pred             eEeCCCCcCC
Q 001653          887 SLDLSYNLLH  896 (1037)
Q Consensus       887 ~LdLs~N~l~  896 (1037)
                      +|+|++|.+.
T Consensus       532 hLeL~gNpfr  541 (565)
T KOG0472|consen  532 HLELDGNPFR  541 (565)
T ss_pred             EEEecCCccC
Confidence            9999999998

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.2e-40  Score=334.52  Aligned_cols=476  Identities=26%  Similarity=0.412  Sum_probs=366.3

Q ss_pred             CCCCCEEECcCCccCcCCCccccCCCCCCEEECcCCCCCCCcchhccCCCCCCEEEccCCcCCcccChhhhcCCCCCCEE
Q 001653          291 MTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEEL  370 (1037)
Q Consensus       291 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L  370 (1037)
                      -.-|+.+.+++|.+.. +.+.+.++..|.+|++++|+++ ..|++++.+..++.++.++|+++. +|. .+..+.+|..+
T Consensus        44 qv~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~-lp~-~i~s~~~l~~l  119 (565)
T KOG0472|consen   44 QVDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSE-LPE-QIGSLISLVKL  119 (565)
T ss_pred             hcchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhh-ccH-HHhhhhhhhhh
Confidence            3557788888888773 4456778888888888888887 567778888888888888888864 776 67777788888


Q ss_pred             EccCCcccccccCcccccCCCCcceeeCCCcccccccccCCCCccceeEEEccccccCCCCchhhhcCCCCCEEEcCCCC
Q 001653          371 ILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLN  450 (1037)
Q Consensus       371 ~L~~n~l~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~  450 (1037)
                      ++++|.+..                                                   +|+.++.+..++.++..+|+
T Consensus       120 ~~s~n~~~e---------------------------------------------------l~~~i~~~~~l~dl~~~~N~  148 (565)
T KOG0472|consen  120 DCSSNELKE---------------------------------------------------LPDSIGRLLDLEDLDATNNQ  148 (565)
T ss_pred             hccccceee---------------------------------------------------cCchHHHHhhhhhhhccccc
Confidence            888777633                                                   34455566667777777777


Q ss_pred             CcccCchhHhhcCCCCcEEEccCCccccCCccCccCCCCcCEEEccCCcCcccCChhhhhCCCCCcEEECcCCcCCCCCC
Q 001653          451 LSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIP  530 (1037)
Q Consensus       451 l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  530 (1037)
                      ++ ..|..++ .+.                        ++..+++.+|.+. ..|++... +..|+.||...|.+. .+|
T Consensus       149 i~-slp~~~~-~~~------------------------~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-tlP  199 (565)
T KOG0472|consen  149 IS-SLPEDMV-NLS------------------------KLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE-TLP  199 (565)
T ss_pred             cc-cCchHHH-HHH------------------------HHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh-cCC
Confidence            76 4555442 344                        4445555555555 45555545 679999999999887 788


Q ss_pred             ccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccCccccccCcccccCCCCCcEEECcCCcCCCCCCccccCCC
Q 001653          531 SSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCY  610 (1037)
Q Consensus       531 ~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  610 (1037)
                      ..++.+.+|..|++.+|.+. .+|+  |.+|..|++++++.|++.-...+....++++.+||+.+|+++ ..|+.+..+.
T Consensus       200 ~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLr  275 (565)
T KOG0472|consen  200 PELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR  275 (565)
T ss_pred             hhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhh
Confidence            89999999999999999998 8994  567999999999999998655555669999999999999998 7788899999


Q ss_pred             CCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCccCCcccccCCCC---CCEE-------ECcCC---------cCc
Q 001653          611 MLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDS---LKIL-------DLSNN---------SIF  671 (1037)
Q Consensus       611 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~---L~~L-------~ls~n---------~l~  671 (1037)
                      +|++||+++|.|+ ..|..++++ .|+.|.+.+|.+..+ ...+-+...   |++|       -++.-         ...
T Consensus       276 sL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~  352 (565)
T KOG0472|consen  276 SLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPS  352 (565)
T ss_pred             hhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCC
Confidence            9999999999998 578889999 999999999998743 222211110   1111       01110         011


Q ss_pred             ccCCCCCCcCccCeEEccCccccCcchhhhcCCC--CccEEEcCCCcCCCCCchhhcCCCCCcE-EecccccccccCchh
Q 001653          672 GTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNP--HLVTLDLSYNSLHGSIPNRIDRLPQLNY-LLLAHNYIKGEIPVQ  748 (1037)
Q Consensus       672 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~--~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-L~L~~N~l~~~~p~~  748 (1037)
                      +..|......+.+.|+++.-+++.++.+.|....  -.+..+++.|++. .+|..+..+..+.+ +.+++|.+. .+|..
T Consensus       353 ~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~  430 (565)
T KOG0472|consen  353 ESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLE  430 (565)
T ss_pred             CcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHH
Confidence            2233333356788899999999877776665433  3788999999998 78888877766554 555555555 89999


Q ss_pred             hcCCCCccEEEccCCcCcCcCCCccccCCcCcCCCCCCCCccccccccccccccCCCCCCCCCCCccceEEEeecCcccc
Q 001653          749 LCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYY  828 (1037)
Q Consensus       749 ~~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  828 (1037)
                      ++.+++|..|+|++|.+. .+|..++.+                                                    
T Consensus       431 l~~l~kLt~L~L~NN~Ln-~LP~e~~~l----------------------------------------------------  457 (565)
T KOG0472|consen  431 LSQLQKLTFLDLSNNLLN-DLPEEMGSL----------------------------------------------------  457 (565)
T ss_pred             HHhhhcceeeecccchhh-hcchhhhhh----------------------------------------------------
Confidence            999999999999998875 677665543                                                    


Q ss_pred             ccccccccccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcCcccccCCCC
Q 001653          829 YQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNT  908 (1037)
Q Consensus       829 ~~~~~l~~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~~~~l~~  908 (1037)
                            ..|+.||+|+|+|. .+|..+-.+..++.+--++|++....|+.+.+|.+|..|||.+|.+. .||+.++++++
T Consensus       458 ------v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmtn  529 (565)
T KOG0472|consen  458 ------VRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTN  529 (565)
T ss_pred             ------hhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccc
Confidence                  26889999999998 88988888888888877889999888888999999999999999997 68889999999


Q ss_pred             CCeEecCCCcce
Q 001653          909 LEVFKVAYNNLS  920 (1037)
Q Consensus       909 L~~l~ls~N~l~  920 (1037)
                      |+.|++++|++.
T Consensus       530 L~hLeL~gNpfr  541 (565)
T KOG0472|consen  530 LRHLELDGNPFR  541 (565)
T ss_pred             eeEEEecCCccC
Confidence            999999999998

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-36  Score=320.76  Aligned_cols=362  Identities=25%  Similarity=0.274  Sum_probs=330.1

Q ss_pred             ceeEEEccccccCCCCchhhhcCCCCCEEEcCCCCCcccCchhHhhcCCCCcEEEccCCccccCCccCccCCCCcCEEEc
Q 001653          416 QLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDV  495 (1037)
Q Consensus       416 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l  495 (1037)
                      .-+.|++++|.+...-+.++.++++|+++++..|.++ .+|... +....++.|+|.+|.+.......+..++.|+.||+
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLDL  156 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence            5678999999999999999999999999999999998 788753 44556999999999999999999999999999999


Q ss_pred             cCCcCcccCChhhhhCCCCCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccCcccc
Q 001653          496 FNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQ  575 (1037)
Q Consensus       496 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~  575 (1037)
                      |.|.++ .+|..-+..-+++++|+|++|.|+......|..+.+|.+|.|+.|+++ .+|...|..+++|+.|+|..|+|.
T Consensus       157 SrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  157 SRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             hhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhcccccee
Confidence            999998 788776665578999999999999888889999999999999999999 999999999999999999999998


Q ss_pred             ccCcccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCccCCccccc
Q 001653          576 GHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFC  655 (1037)
Q Consensus       576 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  655 (1037)
                      -.....|.++++|+.|.|..|++...-.+.|..|.+++.|+|..|+++..-..|+.+++.|+.|++++|.+..+.++.+.
T Consensus       235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws  314 (873)
T KOG4194|consen  235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS  314 (873)
T ss_pred             eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence            76678899999999999999999988889999999999999999999988888999999999999999999999999999


Q ss_pred             CCCCCCEEECcCCcCcccCCCCCC-cCccCeEEccCccccCcchhhhcCCCCccEEEcCCCcCCCCCch---hhcCCCCC
Q 001653          656 QRDSLKILDLSNNSIFGTLPSCFS-PASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPN---RIDRLPQL  731 (1037)
Q Consensus       656 ~~~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~---~~~~l~~L  731 (1037)
                      .+++|++|+|++|+|+...++.|. +..|++|+|++|.++..-..+|..+++|++|||++|.++..+.+   .|..+++|
T Consensus       315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~L  394 (873)
T KOG4194|consen  315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSL  394 (873)
T ss_pred             hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhh
Confidence            999999999999999988888777 79999999999999999899999999999999999999876643   57789999


Q ss_pred             cEEecccccccccCchhhcCCCCccEEEccCCcCcCcCCCccccCCcCcC
Q 001653          732 NYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEG  781 (1037)
Q Consensus       732 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~  781 (1037)
                      +.|++.+|++....-.+|..+++|+.|||.+|.+-..-|..|..+.+++.
T Consensus       395 rkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~L  444 (873)
T KOG4194|consen  395 RKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKEL  444 (873)
T ss_pred             hheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhh
Confidence            99999999999666688999999999999999998777877777655544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-35  Score=330.50  Aligned_cols=498  Identities=26%  Similarity=0.295  Sum_probs=254.9

Q ss_pred             ccccccccccccccEEEccCCCCCCCcchhhcCCCCCCEEECcCCccCcCCCccccCCCCCCEEECcCCCCCCCcchhcc
Q 001653          258 TILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLA  337 (1037)
Q Consensus       258 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  337 (1037)
                      +.+|..+..-..++.|+++.|.+....-+...+.-+|+.||+++|++. ..|..+..+..|+.|+++.|.|. ..|.+..
T Consensus        11 ~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~   88 (1081)
T KOG0618|consen   11 ELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCS   88 (1081)
T ss_pred             cccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhh
Confidence            345666666566778888877765533344455556888888888877 67777888888888888888887 5677777


Q ss_pred             CCCCCCEEEccCCcCCcccChhhhcCCCCCCEEEccCCcccccccCcccccCCCCcceeeCCCcccccccccCCCCccce
Q 001653          338 NLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQL  417 (1037)
Q Consensus       338 ~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L  417 (1037)
                      ++.+|+++.|.+|++.. .|. .+..+.+|+.|++++|.+...|                                    
T Consensus        89 ~~~~l~~lnL~~n~l~~-lP~-~~~~lknl~~LdlS~N~f~~~P------------------------------------  130 (1081)
T KOG0618|consen   89 NMRNLQYLNLKNNRLQS-LPA-SISELKNLQYLDLSFNHFGPIP------------------------------------  130 (1081)
T ss_pred             hhhcchhheeccchhhc-Cch-hHHhhhcccccccchhccCCCc------------------------------------
Confidence            88888888888888753 665 7788888888888888774333                                    


Q ss_pred             eEEEccccccCCCCchhhhcCCCCCEEEcCCCCCcccCchhHhhcCCCCcEEEccCCccccCCccCccCCCCcCEEEccC
Q 001653          418 TSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFN  497 (1037)
Q Consensus       418 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  497 (1037)
                                     ..+..+..+..++.++|.....++.      ...+.+++..|.+.+.+......++.  .||+.+
T Consensus       131 ---------------l~i~~lt~~~~~~~s~N~~~~~lg~------~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~  187 (1081)
T KOG0618|consen  131 ---------------LVIEVLTAEEELAASNNEKIQRLGQ------TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRY  187 (1081)
T ss_pred             ---------------hhHHhhhHHHHHhhhcchhhhhhcc------ccchhhhhhhhhcccchhcchhhhhe--eeeccc
Confidence                           3333333444444444411111111      11444444445444444444433333  344444


Q ss_pred             CcCcccCChhhhhCCCCCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccCcccccc
Q 001653          498 NFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGH  577 (1037)
Q Consensus       498 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~  577 (1037)
                      |.+. ..                           .+..+..|+.+....|++. .+..    .-++|+.|+.++|.++..
T Consensus       188 N~~~-~~---------------------------dls~~~~l~~l~c~rn~ls-~l~~----~g~~l~~L~a~~n~l~~~  234 (1081)
T KOG0618|consen  188 NEME-VL---------------------------DLSNLANLEVLHCERNQLS-ELEI----SGPSLTALYADHNPLTTL  234 (1081)
T ss_pred             chhh-hh---------------------------hhhhccchhhhhhhhcccc-eEEe----cCcchheeeeccCcceee
Confidence            4443 11                           2233334444444444433 1111    123444444444444311


Q ss_pred             CcccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCccCCcccccCC
Q 001653          578 IFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQR  657 (1037)
Q Consensus       578 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  657 (1037)
                      .+  .....+|++++++.|+++ .+|++++.|.+|+.++..+|.++ .+|..+...++|+.|.+.+|.+. .+|......
T Consensus       235 ~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~  309 (1081)
T KOG0618|consen  235 DV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGL  309 (1081)
T ss_pred             cc--ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCccccc
Confidence            11  111234444444444444 23344445555555555555443 34444444444555555555444 344444444


Q ss_pred             CCCCEEECcCCcCcccCCCCCC--cCccCeEEccCccccCcchhhhcCCCCccEEEcCCCcCCCCCchhhcCCCCCcEEe
Q 001653          658 DSLKILDLSNNSIFGTLPSCFS--PASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLL  735 (1037)
Q Consensus       658 ~~L~~L~ls~n~l~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  735 (1037)
                      +.|++|||..|++....+..+.  ..++..|+.+.|++.......=...+.|+.|.+.+|.+++..-..+.+..+|++|+
T Consensus       310 ~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLh  389 (1081)
T KOG0618|consen  310 KSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLH  389 (1081)
T ss_pred             ceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeee
Confidence            4555555555554422222222  22344444444444433211112233455555555555544434444555555555


Q ss_pred             cccccccccCchhhcCCCCccEEEccCCcCcCcCCCccccCCcCcCCCCCCCCccccccccccccccCCCCCCCCCCCcc
Q 001653          736 LAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKE  815 (1037)
Q Consensus       736 L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  815 (1037)
                      |++|++.......+.++..|+.|+||+|+++ .+|.++.++.                                      
T Consensus       390 LsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~--------------------------------------  430 (1081)
T KOG0618|consen  390 LSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLG--------------------------------------  430 (1081)
T ss_pred             ecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhh--------------------------------------
Confidence            5555554332333445555555555555554 3443333221                                      


Q ss_pred             ceEEEeecCccccccccccccccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcC
Q 001653          816 ETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL  895 (1037)
Q Consensus       816 ~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l  895 (1037)
                                          .|++|..-+|++. ..| ++.++++|+.+|+|.|+|+...-..-..-++|++||||+|.=
T Consensus       431 --------------------~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  431 --------------------RLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             --------------------hhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence                                3444445555554 455 566666666666666666643322222226677777777753


Q ss_pred             CCcCcccccCCCCCCeEecCCC
Q 001653          896 HGKIPPQLIVLNTLEVFKVAYN  917 (1037)
Q Consensus       896 ~~~ip~~~~~l~~L~~l~ls~N  917 (1037)
                      .-..-..|..+.++..+++.-|
T Consensus       489 l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  489 LVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             cccchhhhHHhhhhhheecccC
Confidence            3334445555566666666555

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=1e-34  Score=323.68  Aligned_cols=381  Identities=25%  Similarity=0.327  Sum_probs=296.7

Q ss_pred             CchhhhcCCCCCEEEcCCCCCcccCchhHhhcCCCCcEEEccCCccccCCccCccCCCCcCEEEccCCcCcccCChhhhh
Q 001653          431 FPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGT  510 (1037)
Q Consensus       431 ~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  510 (1037)
                      .|..+..+.+|+.|+++.|++. .+|..+ ..++.++.+..++|                        .....++.    
T Consensus       106 lP~~~~~lknl~~LdlS~N~f~-~~Pl~i-~~lt~~~~~~~s~N------------------------~~~~~lg~----  155 (1081)
T KOG0618|consen  106 LPASISELKNLQYLDLSFNHFG-PIPLVI-EVLTAEEELAASNN------------------------EKIQRLGQ----  155 (1081)
T ss_pred             CchhHHhhhcccccccchhccC-CCchhH-HhhhHHHHHhhhcc------------------------hhhhhhcc----
Confidence            4555666667777777777775 555554 34444444444444                        11111111    


Q ss_pred             CCCCCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccCccccccCcccccCCCCCcE
Q 001653          511 YLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMT  590 (1037)
Q Consensus       511 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  590 (1037)
                        ..++.+++..|.+.+.++..+..++.  .|||++|.+. ...   ...+.+|+.+....|+++...    ...++|+.
T Consensus       156 --~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~----~~g~~l~~  223 (1081)
T KOG0618|consen  156 --TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELE----ISGPSLTA  223 (1081)
T ss_pred             --ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEE----ecCcchhe
Confidence              13677888888888888877777766  7999999886 222   235889999999999987543    24578999


Q ss_pred             EECcCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCccCCcccccCCCCCCEEECcCCcC
Q 001653          591 LQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSI  670 (1037)
Q Consensus       591 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l  670 (1037)
                      |+.++|.++...+.  ..-.+|++++++.|+++ .+|+|++.+.+|+.+...+|+++ .+|..+...++|+.|++..|.+
T Consensus       224 L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel  299 (1081)
T KOG0618|consen  224 LYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNEL  299 (1081)
T ss_pred             eeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhh
Confidence            99999999854433  22358999999999998 56799999999999999999996 7899999999999999999999


Q ss_pred             cccCCCCCCcCccCeEEccCccccCcchhhhcCCCC-ccEEEcCCCcCCCCCch-hhcCCCCCcEEecccccccccCchh
Q 001653          671 FGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPH-LVTLDLSYNSLHGSIPN-RIDRLPQLNYLLLAHNYIKGEIPVQ  748 (1037)
Q Consensus       671 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~-L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~  748 (1037)
                      ....|..-...+|++|+|..|++...++..+.-... |..|+.+.|++.. .|. .=...+.|+.|++.+|.++...-+.
T Consensus       300 ~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~c~p~  378 (1081)
T KOG0618|consen  300 EYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDSCFPV  378 (1081)
T ss_pred             hhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCcccccchhh
Confidence            976666556899999999999999877766665554 8889999999884 442 2233678999999999999888888


Q ss_pred             hcCCCCccEEEccCCcCcCcCCCccccCCcCcCCCCCCCCccccccccccccccCCCCCCCCCCCccceEEEeecCcccc
Q 001653          749 LCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYY  828 (1037)
Q Consensus       749 ~~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  828 (1037)
                      +.+.+.|++|+|++|++. ++|....                                                      
T Consensus       379 l~~~~hLKVLhLsyNrL~-~fpas~~------------------------------------------------------  403 (1081)
T KOG0618|consen  379 LVNFKHLKVLHLSYNRLN-SFPASKL------------------------------------------------------  403 (1081)
T ss_pred             hccccceeeeeecccccc-cCCHHHH------------------------------------------------------
Confidence            999999999999999996 4553211                                                      


Q ss_pred             ccccccccccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcCcccccCCCC
Q 001653          829 YQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNT  908 (1037)
Q Consensus       829 ~~~~~l~~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~~~~l~~  908 (1037)
                         ..+..|++|+||+|+|+ .+|..+..+..|++|...+|++. ..| +++.+++|+.+|+|.|+|+...-..-..-+.
T Consensus       404 ---~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~  477 (1081)
T KOG0618|consen  404 ---RKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPN  477 (1081)
T ss_pred             ---hchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcc
Confidence               11347889999999999 89999999999999999999999 677 8999999999999999998654333333389


Q ss_pred             CCeEecCCCcc
Q 001653          909 LEVFKVAYNNL  919 (1037)
Q Consensus       909 L~~l~ls~N~l  919 (1037)
                      |++||+++|..
T Consensus       478 LkyLdlSGN~~  488 (1081)
T KOG0618|consen  478 LKYLDLSGNTR  488 (1081)
T ss_pred             cceeeccCCcc
Confidence            99999999973

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=3.2e-32  Score=289.18  Aligned_cols=357  Identities=25%  Similarity=0.375  Sum_probs=162.6

Q ss_pred             EEccCCcCc-ccCChhhhhCCCCCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccC
Q 001653          493 LDVFNNFFQ-GHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSN  571 (1037)
Q Consensus       493 L~l~~n~l~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~  571 (1037)
                      .|+++|.++ +..|..+-. +++++.|.|...++. .+|..++.+.+|++|.+++|++. ++-..+. .++.|+.+++.+
T Consensus        12 vDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs-~Lp~LRsv~~R~   87 (1255)
T KOG0444|consen   12 VDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELS-DLPRLRSVIVRD   87 (1255)
T ss_pred             ccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhc-cchhhHHHhhhc
Confidence            444444444 233443333 344455555444444 34444455555555555555444 3332222 244444455544


Q ss_pred             ccccc-cCcccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCccCC
Q 001653          572 NRLQG-HIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPI  650 (1037)
Q Consensus       572 n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  650 (1037)
                      |++.. -+|..+..+..|+.|||++|++. ..|..+...+++-.|+||+|+|..+....|.+++-|-.|||++|++. .+
T Consensus        88 N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~L  165 (1255)
T KOG0444|consen   88 NNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-ML  165 (1255)
T ss_pred             cccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hc
Confidence            44431 23444444455555555555544 34444444444555555555554322233444445555555555544 34


Q ss_pred             cccccCCCCCCEEECcCCcCcccC-CCCCCcCccCeEEccCcccc-CcchhhhcCCCCccEEEcCCCcCCCCCchhhcCC
Q 001653          651 PIEFCQRDSLKILDLSNNSIFGTL-PSCFSPASIEQVHLSKNKIE-GRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRL  728 (1037)
Q Consensus       651 ~~~~~~~~~L~~L~ls~n~l~~~~-~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l  728 (1037)
                      |..+..+..|++|+|++|.+.-.- ...-++++|+.|.+++-+=+ .-+|..+..+.+|..+|+|.|.+. ..|+.+..+
T Consensus       166 PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l  244 (1255)
T KOG0444|consen  166 PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKL  244 (1255)
T ss_pred             CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhh
Confidence            444444445555555555442110 00011334444444433211 233444444455555555555554 445555555


Q ss_pred             CCCcEEecccccccccCchhhcCCCCccEEEccCCcCcCcCCCccccCCcCcCCCCCCCCccccccccccccccCCCCCC
Q 001653          729 PQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQS  808 (1037)
Q Consensus       729 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  808 (1037)
                      ++|+.|+|++|+|+ .+....+...+|++|++|.|+++ .+|.++..+                                
T Consensus       245 ~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL--------------------------------  290 (1255)
T KOG0444|consen  245 RNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKL--------------------------------  290 (1255)
T ss_pred             hhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhh--------------------------------
Confidence            55555555555554 33334444444555555555554 334333221                                


Q ss_pred             CCCCCccceEEEeecCccccccccccccccEEEccCCcccc-cCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCe
Q 001653          809 SPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG-EIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIES  887 (1037)
Q Consensus       809 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g-~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~  887 (1037)
                                                +.|+.|++.+|+++- -||..||.+.+|+++..++|.+. ..|+.+..+..|+.
T Consensus       291 --------------------------~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~k  343 (1255)
T KOG0444|consen  291 --------------------------TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQK  343 (1255)
T ss_pred             --------------------------HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHH
Confidence                                      134444444444431 24555555555555555555554 45555555555555


Q ss_pred             EeCCCCcCCCcCcccccCCCCCCeEecCCCc
Q 001653          888 LDLSYNLLHGKIPPQLIVLNTLEVFKVAYNN  918 (1037)
Q Consensus       888 LdLs~N~l~~~ip~~~~~l~~L~~l~ls~N~  918 (1037)
                      |.|++|+|. ..|+.+--++.|++||+..|+
T Consensus       344 L~L~~NrLi-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  344 LKLDHNRLI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             hccccccee-echhhhhhcCCcceeeccCCc
Confidence            555555554 244455555555555555553

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=6.3e-32  Score=286.92  Aligned_cols=393  Identities=24%  Similarity=0.334  Sum_probs=225.8

Q ss_pred             ceeEEEccccccC-CCCchhhhcCCCCCEEEcCCCCCcccCchhHhhcCCCCcEEEccCCccccCCccCccCCCCcCEEE
Q 001653          416 QLTSISLSGYVDG-GTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLD  494 (1037)
Q Consensus       416 ~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  494 (1037)
                      -.+-+++++|.++ +.+|.....+++++-|.|...++. .+|+.+ +.+.+|+.|.+++|++... ...+..++.|+.++
T Consensus         8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~   84 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVI   84 (1255)
T ss_pred             eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHh
Confidence            3456677777776 447777777777777777777776 677765 5677777777777766432 23344455555555


Q ss_pred             ccCCcCc-ccCChhhhhCCCCCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccCcc
Q 001653          495 VFNNFFQ-GHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNR  573 (1037)
Q Consensus       495 l~~n~l~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~  573 (1037)
                      +.+|++. .-||.++|. +..|+.|||++|++. ..|..+...+++-+|+||+|+|. +||..+|.++..|-        
T Consensus        85 ~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLL--------  153 (1255)
T KOG0444|consen   85 VRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLL--------  153 (1255)
T ss_pred             hhccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHh--------
Confidence            5555543 124445444 444555555555554 34444444555555555555554 45555444444444        


Q ss_pred             ccccCcccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCc-cCCcc
Q 001653          574 LQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLE-GPIPI  652 (1037)
Q Consensus       574 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~  652 (1037)
                                      .|||++|++. .+|+.+..+..|++|+|++|.+....-..+..+++|++|.+++.+-+ ..+|.
T Consensus       154 ----------------fLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt  216 (1255)
T KOG0444|consen  154 ----------------FLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT  216 (1255)
T ss_pred             ----------------hhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC
Confidence                            4444444443 33444445555555555555443222222334455555555554322 23455


Q ss_pred             cccCCCCCCEEECcCCcCcccCCCCCCcCccCeEEccCccccCcchhhhcCCCCccEEEcCCCcCCCCCchhhcCCCCCc
Q 001653          653 EFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLN  732 (1037)
Q Consensus       653 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  732 (1037)
                      ++..+.+|..+|+|.|++.                        ..|+++..+++|+.|+||+|.|+ .+.-..+...+|+
T Consensus       217 sld~l~NL~dvDlS~N~Lp------------------------~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lE  271 (1255)
T KOG0444|consen  217 SLDDLHNLRDVDLSENNLP------------------------IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLE  271 (1255)
T ss_pred             chhhhhhhhhccccccCCC------------------------cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhh
Confidence            5555555555555555544                        33445555555555666666555 3333444555666


Q ss_pred             EEecccccccccCchhhcCCCCccEEEccCCcCcC-cCCCccccCCcCcCCCCCCCCccccccccccccccCCCCCCCCC
Q 001653          733 YLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSG-RIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPP  811 (1037)
Q Consensus       733 ~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g-~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  811 (1037)
                      +|+++.|+++ .+|.+++++++|+.|.+.+|+++- .||..++.+                                   
T Consensus       272 tLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL-----------------------------------  315 (1255)
T KOG0444|consen  272 TLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL-----------------------------------  315 (1255)
T ss_pred             hhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhh-----------------------------------
Confidence            6666666666 666677777777777777766652 244444432                                   


Q ss_pred             CCccceEEEeecCccccccccccccccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCC
Q 001653          812 MGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLS  891 (1037)
Q Consensus       812 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs  891 (1037)
                                             ..|+++..++|.+. ..|+.+..+..|+.|.|++|++- ..|++|.-++.|+.|||.
T Consensus       316 -----------------------~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlr  370 (1255)
T KOG0444|consen  316 -----------------------IQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLR  370 (1255)
T ss_pred             -----------------------hhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeecc
Confidence                                   24556666677776 77888888888888888888887 788888888888888888


Q ss_pred             CCcCCCcCcccccCCCCCCeEecCC---C--cceecCCC
Q 001653          892 YNLLHGKIPPQLIVLNTLEVFKVAY---N--NLSGKIPD  925 (1037)
Q Consensus       892 ~N~l~~~ip~~~~~l~~L~~l~ls~---N--~l~g~ip~  925 (1037)
                      .|.=--..|.--..-+.|+.-++..   +  +|.|..|.
T Consensus       371 eNpnLVMPPKP~da~~~lefYNIDFSLq~QlrlAG~~pa  409 (1255)
T KOG0444|consen  371 ENPNLVMPPKPNDARKKLEFYNIDFSLQHQLRLAGQMPA  409 (1255)
T ss_pred             CCcCccCCCCcchhhhcceeeecceehhhHHhhccCCcc
Confidence            8854433333222224566655443   2  35565553

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.93  E-value=1.4e-28  Score=249.34  Aligned_cols=395  Identities=22%  Similarity=0.238  Sum_probs=194.5

Q ss_pred             cCEEEccCCcCcccCChhhhhCCCCCcEEECcCCcCCCCCCccccCCCCCCEEEeec-cccccccchhHhhcCCCCCEEE
Q 001653          490 LATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISN-NQLTGEIPERMATGCFSLEILA  568 (1037)
Q Consensus       490 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~i~~~~~~~~~~L~~L~  568 (1037)
                      ...++|..|+|+ .||...|..+++|+.|||++|+|+.+-|.+|.++++|.+|-+.+ |+|+ .+|...|.++.+|+.|.
T Consensus        69 tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   69 TVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             ceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence            334444555554 45555555555555555555555555555555555555544444 5555 55555555555555555


Q ss_pred             ccCccccccCcccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeccCCccC------------CCCCcccCCCCCC
Q 001653          569 LSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLF------------GKIPRWLGNLPTL  636 (1037)
Q Consensus       569 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~------------~~~~~~~~~l~~L  636 (1037)
                      +.-|++.....+.|..++++..|.+.+|.+..+-..+|..+.+++.+.+..|.+.            ...|..++.....
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence            5555555555555555555555555555555333335555555555555555421            1112222222222


Q ss_pred             CEEECCCCcCccCCcccccCC-CCCCEEECcCCcCcccCCC-CCC-cCccCeEEccCccccCcchhhhcCCCCccEEEcC
Q 001653          637 QYIIMPNNNLEGPIPIEFCQR-DSLKILDLSNNSIFGTLPS-CFS-PASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLS  713 (1037)
Q Consensus       637 ~~L~L~~n~l~~~~~~~~~~~-~~L~~L~ls~n~l~~~~~~-~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls  713 (1037)
                      .-..+.++++..+.+..|... ..+..--.+.+...+..|. +|. +++|+.|+|++|+++++-+.+|.+...++.|.|.
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~  306 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT  306 (498)
T ss_pred             chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence            222233333322222222111 0111111111112222221 122 4555555555555555555555555555555555


Q ss_pred             CCcCCCCCchhhcCCCCCcEEecccccccccCchhhcCCCCccEEEccCCcCcC-----------------cCCCccccC
Q 001653          714 YNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSG-----------------RIPPCLVNT  776 (1037)
Q Consensus       714 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g-----------------~ip~~~~~~  776 (1037)
                      .|++...-...|.++..|+.|+|.+|+|+...|.+|..+..|..|.|-.|++.+                 ..|+|-..-
T Consensus       307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~  386 (498)
T KOG4237|consen  307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPG  386 (498)
T ss_pred             cchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCc
Confidence            555554444445555555555555555555555555555555555555555432                 345554443


Q ss_pred             CcCcCCCCCCCCccccccccccccccCCCCCCCCC--CCccceEEEeecCccccccccccccccEEEccCCcccccCCcc
Q 001653          777 SLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPP--MGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQ  854 (1037)
Q Consensus       777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~~p~~  854 (1037)
                      .+.+...+++....+.|...+.  ..|......++  .+...                      +...|++.+. .+|..
T Consensus       387 ~~~~~~~~dv~~~~~~c~~~ee--~~~~~s~~cP~~c~c~~t----------------------VvRcSnk~lk-~lp~~  441 (498)
T KOG4237|consen  387 FVRQIPISDVAFGDFRCGGPEE--LGCLTSSPCPPPCTCLDT----------------------VVRCSNKLLK-LLPRG  441 (498)
T ss_pred             hhccccchhccccccccCCccc--cCCCCCCCCCCCcchhhh----------------------hHhhcccchh-hcCCC
Confidence            3444444444444444431111  11111111111  11112                      2334444444 44544


Q ss_pred             ccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcCcccccCCCCCCeEecCCC
Q 001653          855 IGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYN  917 (1037)
Q Consensus       855 ~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~~~~l~~L~~l~ls~N  917 (1037)
                      +.  ....+|+|.+|.++ .+|++  .+.+| .+|||+|+++..--.+|.+++.|.+|-+|||
T Consensus       442 iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  442 IP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             CC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            43  34566778888887 66666  55677 7888888887777777888888888888876

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=3.1e-26  Score=232.46  Aligned_cols=393  Identities=20%  Similarity=0.204  Sum_probs=276.1

Q ss_pred             EEccCCcCcccCChhhhhCCCCCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccC-
Q 001653          493 LDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSN-  571 (1037)
Q Consensus       493 L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~-  571 (1037)
                      .+-++-.++ .+|.++   .+.-.+++|..|+|+.+.|.+|..+++|+.|||++|+|+ .|....|.++.+|..|-+.+ 
T Consensus        51 VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~  125 (498)
T KOG4237|consen   51 VDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGN  125 (498)
T ss_pred             EEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcC
Confidence            344444454 677775   357899999999999888899999999999999999998 88888889999988776655 


Q ss_pred             ccccccCcccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCc----
Q 001653          572 NRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLE----  647 (1037)
Q Consensus       572 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----  647 (1037)
                      |+|+......|.++..|+.|.+.-|++.-...+.|..+++|..|.+.+|.+....-..|..+..++.+.+..|.+.    
T Consensus       126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn  205 (498)
T KOG4237|consen  126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN  205 (498)
T ss_pred             CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence            9999998899999999999999999999888899999999999999999997554458999999999999998842    


Q ss_pred             --------cCCcccccCCCCCCEEECcCCcCcccCCCCCCcC--ccCeEEccCccccCcch-hhhcCCCCccEEEcCCCc
Q 001653          648 --------GPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPA--SIEQVHLSKNKIEGRLE-SIIHDNPHLVTLDLSYNS  716 (1037)
Q Consensus       648 --------~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~--~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~Ls~N~  716 (1037)
                              ...|..++...-.....+.+.++..+-+..|...  ++..-..+.+...++-| ..|..+++|++|+|++|+
T Consensus       206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~  285 (498)
T KOG4237|consen  206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK  285 (498)
T ss_pred             cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence                    1233344444444444555555555544444422  33222334444444444 689999999999999999


Q ss_pred             CCCCCchhhcCCCCCcEEecccccccccCchhhcCCCCccEEEccCCcCcCcCCCccccCCcCcCCCCCCCCcccccccc
Q 001653          717 LHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRA  796 (1037)
Q Consensus       717 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~  796 (1037)
                      ++++-+.+|..+..++.|.|..|++...-...|.++..|+.|+|.+|+++...|..|..........-...|....|.-.
T Consensus       286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~  365 (498)
T KOG4237|consen  286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA  365 (498)
T ss_pred             cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence            99999999999999999999999999776778999999999999999999888877655432111111111112222211


Q ss_pred             ccccc------cCCCCCCCCCCCccceEEEeecCccccccccccccccEEEccCCcccc---cCCccccC---------c
Q 001653          797 SVYRS------ACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG---EIPTQIGY---------L  858 (1037)
Q Consensus       797 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g---~~p~~~~~---------l  858 (1037)
                      +.-.+      ...+++.                        ....++.++++.+.+..   .-|++.+.         .
T Consensus       366 wl~~Wlr~~~~~~~~~Cq------------------------~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c  421 (498)
T KOG4237|consen  366 WLGEWLRKKSVVGNPRCQ------------------------SPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPC  421 (498)
T ss_pred             HHHHHHhhCCCCCCCCCC------------------------CCchhccccchhccccccccCCccccCCCCCCCCCCCc
Confidence            11100      0011111                        11234444444443321   12222221         1


Q ss_pred             CCC-CEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcCcccccCCCCCCeEecCCCccee
Q 001653          859 TRI-HALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSG  921 (1037)
Q Consensus       859 ~~L-~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~~~~l~~L~~l~ls~N~l~g  921 (1037)
                      +-+ ++..-|++.++ .+|..+.  ..-++|++.+|.++ .+|.+  .+.+| .+|+|+|+++-
T Consensus       422 ~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~  478 (498)
T KOG4237|consen  422 TCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISS  478 (498)
T ss_pred             chhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceeh
Confidence            222 34456666666 5665554  45678999999998 56766  56778 99999999864

>PLN03210 Resistant to P

Probab=99.90  E-value=3.5e-22  Score=253.38  Aligned_cols=318  Identities=23%  Similarity=0.291  Sum_probs=198.5

Q ss_pred             cCChhhhhCCCCCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccCccccccCcccc
Q 001653          503 HIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEK  582 (1037)
Q Consensus       503 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  582 (1037)
                      .+|..+....++|+.|++.++.+. .+|..| ...+|+.|++++|++. .++... ..+++|+.|+++++.....+| .+
T Consensus       579 ~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip-~l  653 (1153)
T PLN03210        579 HLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV-HSLTGLRNIDLRGSKNLKEIP-DL  653 (1153)
T ss_pred             ecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc-ccCCCCCEEECCCCCCcCcCC-cc
Confidence            344444333345677777666665 455555 3566777777777665 555544 236667777776655434444 35


Q ss_pred             cCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCccCCcccccCCCCCCE
Q 001653          583 FNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKI  662 (1037)
Q Consensus       583 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  662 (1037)
                      ..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|..   ..+|+.
T Consensus       654 s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~  729 (1153)
T PLN03210        654 SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISW  729 (1153)
T ss_pred             ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCe
Confidence            566677777777766656666667777777777777765555566544 5667777777776554444432   345677


Q ss_pred             EECcCCcCcccCCCCCCcCccCeEEccCcccc-------CcchhhhcCCCCccEEEcCCCcCCCCCchhhcCCCCCcEEe
Q 001653          663 LDLSNNSIFGTLPSCFSPASIEQVHLSKNKIE-------GRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLL  735 (1037)
Q Consensus       663 L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~-------~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  735 (1037)
                      |++++|.+. .+|..+.+++|++|.+.++...       ...+..+...++|+.|++++|...+.+|.+++++++|+.|+
T Consensus       730 L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~  808 (1153)
T PLN03210        730 LDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLE  808 (1153)
T ss_pred             eecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEE
Confidence            777777765 4455555666666666653321       11222233346777777777766666777777777777777


Q ss_pred             cccccccccCchhhcCCCCccEEEccCCcCcCcCCCccccCCcCcCCCCCCCCccccccccccccccCCCCCCCCCCCcc
Q 001653          736 LAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKE  815 (1037)
Q Consensus       736 L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  815 (1037)
                      +++|...+.+|..+ .+++|+.|++++|.....+|..                                           
T Consensus       809 Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~-------------------------------------------  844 (1153)
T PLN03210        809 IENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI-------------------------------------------  844 (1153)
T ss_pred             CCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-------------------------------------------
Confidence            77765555666655 5777777777776543222211                                           


Q ss_pred             ceEEEeecCccccccccccccccEEEccCCcccccCCccccCcCCCCEEEcCC-CccccchhhhhhcCccCCeEeCCCCc
Q 001653          816 ETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSH-NNLTGTIPTTFSNLKQIESLDLSYNL  894 (1037)
Q Consensus       816 ~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~-N~l~~~ip~~~~~l~~L~~LdLs~N~  894 (1037)
                                        .++++.|+|++|.++ .+|..++.+++|+.|+|++ |+++ .+|..+..+++|+.++++++.
T Consensus       845 ------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        845 ------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence                              125667788888877 6777778888888888877 5555 466677777888888877763

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.89  E-value=8.5e-22  Score=249.83  Aligned_cols=341  Identities=23%  Similarity=0.263  Sum_probs=273.4

Q ss_pred             CChhhhhCCCCCcEEECcCCc------CCCCCCccccCCC-CCCEEEeeccccccccchhHhhcCCCCCEEEccCccccc
Q 001653          504 IPVEIGTYLPGLMELNLSRNA------FNGSIPSSFADMK-MLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQG  576 (1037)
Q Consensus       504 ~~~~~~~~~~~L~~L~L~~n~------l~~~~~~~~~~l~-~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~  576 (1037)
                      +....+..+++|+.|.+..+.      +...+|..|..++ +|+.|++.++.+. .+|..+  .+.+|+.|++++|++..
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~  625 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK  625 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc
Confidence            344455567888888886553      2334666676664 6999999999997 888876  37899999999999874


Q ss_pred             cCcccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCccCCcccccC
Q 001653          577 HIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQ  656 (1037)
Q Consensus       577 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  656 (1037)
                       ++..+..+++|+.|+|+++...+.+|. ++.+++|+.|++++|.....+|..++++++|+.|++++|...+.+|..+ +
T Consensus       626 -L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~  702 (1153)
T PLN03210        626 -LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N  702 (1153)
T ss_pred             -cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence             567778899999999999876667774 7889999999999998878899999999999999999987666778765 7


Q ss_pred             CCCCCEEECcCCcCcccCCCCCCcCccCeEEccCccccCcchhhhcCCCCccEEEcCCCcCC-------CCCchhhcCCC
Q 001653          657 RDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLH-------GSIPNRIDRLP  729 (1037)
Q Consensus       657 ~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~-------~~~~~~~~~l~  729 (1037)
                      +++|+.|++++|...+.+|..  ..+|+.|++++|.+... |..+ .+++|++|++.++...       ...+..+...+
T Consensus       703 l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~l-P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~  778 (1153)
T PLN03210        703 LKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEEF-PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP  778 (1153)
T ss_pred             CCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccccc-cccc-cccccccccccccchhhccccccccchhhhhccc
Confidence            899999999999877777654  46899999999998754 4433 5788999998875422       12222333457


Q ss_pred             CCcEEecccccccccCchhhcCCCCccEEEccCCcCcCcCCCccccCCcCcCCCCCCCCccccccccccccccCCCCCCC
Q 001653          730 QLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSS  809 (1037)
Q Consensus       730 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  809 (1037)
                      +|+.|++++|...+.+|..++++++|+.|++++|+..+.+|..+ +                                  
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~----------------------------------  823 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N----------------------------------  823 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C----------------------------------
Confidence            89999999999888999999999999999999987665666443 1                                  


Q ss_pred             CCCCccceEEEeecCccccccccccccccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEe
Q 001653          810 PPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLD  889 (1037)
Q Consensus       810 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~Ld  889 (1037)
                                              ++.|+.|++++|..-..+|..   ..+|+.|+|++|.++ .+|.++..+++|+.|+
T Consensus       824 ------------------------L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~  875 (1153)
T PLN03210        824 ------------------------LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLD  875 (1153)
T ss_pred             ------------------------ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEE
Confidence                                    347889999998665566653   367999999999999 6899999999999999


Q ss_pred             CCC-CcCCCcCcccccCCCCCCeEecCCCc
Q 001653          890 LSY-NLLHGKIPPQLIVLNTLEVFKVAYNN  918 (1037)
Q Consensus       890 Ls~-N~l~~~ip~~~~~l~~L~~l~ls~N~  918 (1037)
                      |++ |++. .+|..+..++.|+.++++++.
T Consensus       876 L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        876 MNGCNNLQ-RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence            999 5665 478788899999999999863

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.1e-21  Score=228.95  Aligned_cols=266  Identities=23%  Similarity=0.334  Sum_probs=150.4

Q ss_pred             CCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccCccccccCcccccCCCCCcEEEC
Q 001653          514 GLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQL  593 (1037)
Q Consensus       514 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  593 (1037)
                      .-..|+++++.++ .+|..+.  ++|+.|++++|+++ .+|.    .+++|++|++++|+++.. |.   ..++|+.|++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~L  269 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI  269 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cC---cccccceeec
Confidence            4667788888777 5665554  36778888888777 5664    245666666666666643 22   1245555555


Q ss_pred             cCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCccCCcccccCCCCCCEEECcCCcCccc
Q 001653          594 DGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGT  673 (1037)
Q Consensus       594 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~  673 (1037)
                      ++|.++. +|..+   +.|+.|++++|+++. +|..   .+                        +|+.|++++|++++.
T Consensus       270 s~N~L~~-Lp~lp---~~L~~L~Ls~N~Lt~-LP~~---p~------------------------~L~~LdLS~N~L~~L  317 (788)
T PRK15387        270 FSNPLTH-LPALP---SGLCKLWIFGNQLTS-LPVL---PP------------------------GLQELSVSDNQLASL  317 (788)
T ss_pred             cCCchhh-hhhch---hhcCEEECcCCcccc-cccc---cc------------------------ccceeECCCCccccC
Confidence            5555542 22211   234455555555442 2221   23                        444445554444432


Q ss_pred             CCCCCCcCccCeEEccCccccCcchhhhcCCCCccEEEcCCCcCCCCCchhhcCCCCCcEEecccccccccCchhhcCCC
Q 001653          674 LPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLK  753 (1037)
Q Consensus       674 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  753 (1037)
                       |..  +.+|+.|++++|.+++. |..   ..+|+.|+|++|++++ +|..   .++|+.|++++|+++ .+|..   ..
T Consensus       318 -p~l--p~~L~~L~Ls~N~L~~L-P~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~  382 (788)
T PRK15387        318 -PAL--PSELCKLWAYNNQLTSL-PTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PS  382 (788)
T ss_pred             -CCC--cccccccccccCccccc-ccc---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---cc
Confidence             211  23444555555555432 211   1356677777777663 4432   245666677777766 35543   24


Q ss_pred             CccEEEccCCcCcCcCCCccccCCcCcCCCCCCCCccccccccccccccCCCCCCCCCCCccceEEEeecCccccccccc
Q 001653          754 EVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRI  833 (1037)
Q Consensus       754 ~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  833 (1037)
                      +|+.|++++|++++ +|..                                                             
T Consensus       383 ~L~~LdLs~N~Lt~-LP~l-------------------------------------------------------------  400 (788)
T PRK15387        383 GLKELIVSGNRLTS-LPVL-------------------------------------------------------------  400 (788)
T ss_pred             ccceEEecCCcccC-CCCc-------------------------------------------------------------
Confidence            56777777777762 3321                                                             


Q ss_pred             cccccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcCcccccC
Q 001653          834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIV  905 (1037)
Q Consensus       834 l~~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~~~~  905 (1037)
                      .+.|+.||+++|+|+ .+|...   ..|+.|+|++|+|+ .+|..+.++++|+.|||++|+|+|.+|..+..
T Consensus       401 ~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        401 PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence            114566777777777 356432   35666777777777 56777777777777777777777777766543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=4.8e-21  Score=223.67  Aligned_cols=269  Identities=25%  Similarity=0.316  Sum_probs=195.2

Q ss_pred             CCcCEEEccCCcCcccCChhhhhCCCCCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEE
Q 001653          488 QKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEIL  567 (1037)
Q Consensus       488 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L  567 (1037)
                      ..-..|+++.+.++ .+|..+.   ++|+.|++.+|+++. +|.   ..++|++|++++|+++ .+|..    .++|+.|
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L  267 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL----PPGLLEL  267 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc----cccccee
Confidence            34668999999998 7888764   489999999999984 554   2588999999999999 78752    5789999


Q ss_pred             EccCccccccCcccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCc
Q 001653          568 ALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLE  647 (1037)
Q Consensus       568 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  647 (1037)
                      ++++|.++.. |..   .++|+.|++++|+++. +|..   .++|+.|++++|++++ +|..   ..+|+.|++++|+++
T Consensus       268 ~Ls~N~L~~L-p~l---p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~  335 (788)
T PRK15387        268 SIFSNPLTHL-PAL---PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT  335 (788)
T ss_pred             eccCCchhhh-hhc---hhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc
Confidence            9999999854 332   3678999999999984 4542   4689999999999985 4542   245777888888887


Q ss_pred             cCCcccccCCCCCCEEECcCCcCcccCCCCCCcCccCeEEccCccccCcchhhhcCCCCccEEEcCCCcCCCCCchhhcC
Q 001653          648 GPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDR  727 (1037)
Q Consensus       648 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~  727 (1037)
                      + +|..   ..+|+.|++++|++++ +|..  +.                        +|+.|++++|.+++ +|..   
T Consensus       336 ~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l--p~------------------------~L~~L~Ls~N~L~~-LP~l---  380 (788)
T PRK15387        336 S-LPTL---PSGLQELSVSDNQLAS-LPTL--PS------------------------ELYKLWAYNNRLTS-LPAL---  380 (788)
T ss_pred             c-cccc---ccccceEecCCCccCC-CCCC--Cc------------------------ccceehhhcccccc-Cccc---
Confidence            4 4431   2356777777777664 2321  23                        34455555555552 3432   


Q ss_pred             CCCCcEEecccccccccCchhhcCCCCccEEEccCCcCcCcCCCccccCCcCcCCCCCCCCccccccccccccccCCCCC
Q 001653          728 LPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQ  807 (1037)
Q Consensus       728 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  807 (1037)
                      .++|+.|++++|+++ .+|..   .++|+.|++++|++++ +|...                                  
T Consensus       381 ~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l~----------------------------------  421 (788)
T PRK15387        381 PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPMLP----------------------------------  421 (788)
T ss_pred             ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcch----------------------------------
Confidence            235666777777766 34432   2567888888888873 55321                                  


Q ss_pred             CCCCCCccceEEEeecCccccccccccccccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCc
Q 001653          808 SSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLK  883 (1037)
Q Consensus       808 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~  883 (1037)
                                                 ..|+.|++++|+|+ .+|..++.++.|+.|+|++|.|+|.+|..+..+.
T Consensus       422 ---------------------------~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~  469 (788)
T PRK15387        422 ---------------------------SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  469 (788)
T ss_pred             ---------------------------hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHh
Confidence                                       14567899999998 7899999999999999999999999998885543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=2e-19  Score=212.03  Aligned_cols=118  Identities=25%  Similarity=0.397  Sum_probs=65.8

Q ss_pred             CCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccCccccccCcccccCCCCCcEEEC
Q 001653          514 GLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQL  593 (1037)
Q Consensus       514 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  593 (1037)
                      +.+.|++++++++ .+|..+.  +.|+.|++++|+++ .+|..++   .+|++|++++|+++. +|..+  .++|+.|++
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATL--PDTIQEMEL  248 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhh--hccccEEEC
Confidence            5677888888777 4555443  46788888888877 6776553   467777777776663 23322  134556666


Q ss_pred             cCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCc
Q 001653          594 DGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLE  647 (1037)
Q Consensus       594 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  647 (1037)
                      ++|++. .+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|++++|+++
T Consensus       249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence            666555 3343332  24555555555554 2333322  24444444444444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=4e-19  Score=209.53  Aligned_cols=182  Identities=26%  Similarity=0.366  Sum_probs=122.5

Q ss_pred             CCcCEEEccCCcCcccCChhhhhCCCCCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEE
Q 001653          488 QKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEIL  567 (1037)
Q Consensus       488 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L  567 (1037)
                      .+.+.|+++++.++ .+|..+.   +.++.|++++|+++ .+|..+.  ++|+.|++++|+++ .+|..+   ..+|+.|
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L  246 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP---EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL---PDTIQEM  246 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh---hccccEE
Confidence            35678888888887 6776553   47889999999888 4555443  57899999999988 788765   3478899


Q ss_pred             EccCccccccCcccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCc
Q 001653          568 ALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLE  647 (1037)
Q Consensus       568 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  647 (1037)
                      ++++|.+.. +|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|+++. +|..+.  ++|+.|++++|+++
T Consensus       247 ~Ls~N~L~~-LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt  317 (754)
T PRK15370        247 ELSINRITE-LPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT  317 (754)
T ss_pred             ECcCCccCc-CChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc
Confidence            999998874 455442  57889999999888 4566553  478999999998874 454332  46777777777776


Q ss_pred             cCCcccccCCCCCCEEECcCCcCcccCCCCCCcCccCeEEccCcccc
Q 001653          648 GPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIE  694 (1037)
Q Consensus       648 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~  694 (1037)
                      . +|..+.  ++|+.|++++|.+++ +|..+ +++|+.|++++|+++
T Consensus       318 ~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l-~~sL~~L~Ls~N~L~  359 (754)
T PRK15370        318 A-LPETLP--PGLKTLEAGENALTS-LPASL-PPELQVLDVSKNQIT  359 (754)
T ss_pred             c-CCcccc--ccceeccccCCcccc-CChhh-cCcccEEECCCCCCC
Confidence            3 443332  456666666666653 33222 234444444444443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=1e-18  Score=193.35  Aligned_cols=105  Identities=25%  Similarity=0.144  Sum_probs=48.3

Q ss_pred             EEEccCccccc-cCcccccCCCCCcEEECcCCcCCCC----CCccccCCCCCCEEeccCCccCC------CCCcccCCCC
Q 001653          566 ILALSNNRLQG-HIFSEKFNLTNLMTLQLDGNNFIGE----IPESLSKCYMLRGLYLSDNHLFG------KIPRWLGNLP  634 (1037)
Q Consensus       566 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~------~~~~~~~~l~  634 (1037)
                      .|+|..+.+++ .....+..+.+|+.++++++.++..    ++..+...+.++.++++++.+.+      .++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            35555666552 2223334455566666666665432    23334444556666666555441      1122334444


Q ss_pred             CCCEEECCCCcCccCCcccccCCCC---CCEEECcCCcC
Q 001653          635 TLQYIIMPNNNLEGPIPIEFCQRDS---LKILDLSNNSI  670 (1037)
Q Consensus       635 ~L~~L~L~~n~l~~~~~~~~~~~~~---L~~L~ls~n~l  670 (1037)
                      +|+.|++++|.+.+..+..+..+..   |+.|++++|++
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~  120 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL  120 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCcc
Confidence            5555555555544333333332222   44444444444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=2.3e-18  Score=190.49  Aligned_cols=212  Identities=25%  Similarity=0.255  Sum_probs=105.9

Q ss_pred             EEECcCCcCC-CCCCccccCCCCCCEEEeeccccccc----cchhHhhcCCCCCEEEccCccccccCcccccCCCCCcEE
Q 001653          517 ELNLSRNAFN-GSIPSSFADMKMLERLDISNNQLTGE----IPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTL  591 (1037)
Q Consensus       517 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~----i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  591 (1037)
                      .|+|..+.++ ......+..+..|+.++++++.+++.    ++..+ ...+++++++++++.+.+. +..+         
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l-~~~~~l~~l~l~~~~~~~~-~~~~---------   70 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASAL-RPQPSLKELCLSLNETGRI-PRGL---------   70 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHH-hhCCCceEEeccccccCCc-chHH---------
Confidence            3555555555 23334455556666666666666421    22221 1234455555555444310 0000         


Q ss_pred             ECcCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCC---CCEEECCCCcCcc----CCcccccCC-CCCCEE
Q 001653          592 QLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPT---LQYIIMPNNNLEG----PIPIEFCQR-DSLKIL  663 (1037)
Q Consensus       592 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~----~~~~~~~~~-~~L~~L  663 (1037)
                              ..++..+..+++|+.|++++|.+.+..+..+..+..   |++|++++|++.+    .+...+..+ ++|+.|
T Consensus        71 --------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L  142 (319)
T cd00116          71 --------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL  142 (319)
T ss_pred             --------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEE
Confidence                    112234445556666666666665444444443333   7777777776653    122233344 556666


Q ss_pred             ECcCCcCcccCCCCCCcCccCeEEccCccccCcchhhhcCCCCccEEEcCCCcCCCC----CchhhcCCCCCcEEecccc
Q 001653          664 DLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGS----IPNRIDRLPQLNYLLLAHN  739 (1037)
Q Consensus       664 ~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N  739 (1037)
                      ++++|.+++....                   .+...+..+++|++|++++|.+++.    ++..+..+++|++|++++|
T Consensus       143 ~L~~n~l~~~~~~-------------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n  203 (319)
T cd00116         143 VLGRNRLEGASCE-------------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN  203 (319)
T ss_pred             EcCCCcCCchHHH-------------------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC
Confidence            6666655531110                   1223444555666666666666532    2223344456666666666


Q ss_pred             ccccc----CchhhcCCCCccEEEccCCcCc
Q 001653          740 YIKGE----IPVQLCQLKEVRLIDLSHNNLS  766 (1037)
Q Consensus       740 ~l~~~----~p~~~~~l~~L~~L~ls~N~l~  766 (1037)
                      .+.+.    ++..+..+++|+.|++++|+++
T Consensus       204 ~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         204 GLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             ccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            66522    2334555667777777777665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.67  E-value=1.4e-18  Score=156.32  Aligned_cols=188  Identities=27%  Similarity=0.478  Sum_probs=150.6

Q ss_pred             cCCCCCCcCccCeEEccCccccCcchhhhcCCCCccEEEcCCCcCCCCCchhhcCCCCCcEEecccccccccCchhhcCC
Q 001653          673 TLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQL  752 (1037)
Q Consensus       673 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  752 (1037)
                      .+|..|..+.++.|.|++|+++.. |..++.+.+|+.|++++|+++ .+|..++.+++|+.|+++-|++. ..|..|+.+
T Consensus        25 ~~~gLf~~s~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~  101 (264)
T KOG0617|consen   25 ELPGLFNMSNITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF  101 (264)
T ss_pred             hcccccchhhhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC
Confidence            345556677788888888888854 446788899999999999999 78899999999999999999998 899999999


Q ss_pred             CCccEEEccCCcCcCc-CCCccccCCcCcCCCCCCCCccccccccccccccCCCCCCCCCCCccceEEEeecCccccccc
Q 001653          753 KEVRLIDLSHNNLSGR-IPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQG  831 (1037)
Q Consensus       753 ~~L~~L~ls~N~l~g~-ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  831 (1037)
                      +.|++|||.+|+++.. +|..|..                                                        
T Consensus       102 p~levldltynnl~e~~lpgnff~--------------------------------------------------------  125 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNENSLPGNFFY--------------------------------------------------------  125 (264)
T ss_pred             chhhhhhccccccccccCCcchhH--------------------------------------------------------
Confidence            9999999999998732 2322211                                                        


Q ss_pred             cccccccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcCcccccCCC---C
Q 001653          832 RILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLN---T  908 (1037)
Q Consensus       832 ~~l~~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~~~~l~---~  908 (1037)
                        ++.|+.|+|+.|.+. .+|.++|++++|+.|.+..|.+- ..|.+++.++.|++|.+.+|+++ .+|+.++++.   +
T Consensus       126 --m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~  200 (264)
T KOG0617|consen  126 --MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGN  200 (264)
T ss_pred             --HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhh
Confidence              346778899999998 88999999999999999999988 78999999999999999999998 5666666543   2


Q ss_pred             CCeEecCCCcceecCC
Q 001653          909 LEVFKVAYNNLSGKIP  924 (1037)
Q Consensus       909 L~~l~ls~N~l~g~ip  924 (1037)
                      =+++.+.+|++..+|.
T Consensus       201 k~v~r~E~NPwv~pIa  216 (264)
T KOG0617|consen  201 KQVMRMEENPWVNPIA  216 (264)
T ss_pred             HHHHhhhhCCCCChHH
Confidence            2445556666655443

>PLN03150 hypothetical protein; Provisional

Probab=99.65  E-value=4.8e-16  Score=183.67  Aligned_cols=118  Identities=33%  Similarity=0.615  Sum_probs=106.6

Q ss_pred             cccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcCcccccCCCCCCeEecC
Q 001653          836 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVA  915 (1037)
Q Consensus       836 ~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~~~~l~~L~~l~ls  915 (1037)
                      .++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|+.++.+++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcceecCCCC--CCCCCCCcccccCCCCCCCCCCCCCCC
Q 001653          916 YNNLSGKIPDR--AQFSTFEEDSYEGNPFLCGQPLSKSCN  953 (1037)
Q Consensus       916 ~N~l~g~ip~~--~~~~~~~~~~~~gNp~lc~~~~~~~c~  953 (1037)
                      +|+++|.+|..  ..+......++.||+++||.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            99999999973  222334566899999999987656674

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.63  E-value=4.8e-18  Score=152.89  Aligned_cols=180  Identities=26%  Similarity=0.446  Sum_probs=156.2

Q ss_pred             hcCCCCccEEEcCCCcCCCCCchhhcCCCCCcEEecccccccccCchhhcCCCCccEEEccCCcCcCcCCCccccCCcCc
Q 001653          701 IHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNE  780 (1037)
Q Consensus       701 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~  780 (1037)
                      +.+++.++.|.||+|+++ .+|..+..+.+|++|++.+|++. .+|..++.+++|+.|+++-|++. ..|..|+..    
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~----  101 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF----  101 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC----
Confidence            445678899999999999 67888999999999999999999 89999999999999999999997 667666553    


Q ss_pred             CCCCCCCCccccccccccccccCCCCCCCCCCCccceEEEeecCccccccccccccccEEEccCCcccc-cCCccccCcC
Q 001653          781 GYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG-EIPTQIGYLT  859 (1037)
Q Consensus       781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g-~~p~~~~~l~  859 (1037)
                                                                            +.|..|||++|++.. ..|..|..++
T Consensus       102 ------------------------------------------------------p~levldltynnl~e~~lpgnff~m~  127 (264)
T KOG0617|consen  102 ------------------------------------------------------PALEVLDLTYNNLNENSLPGNFFYMT  127 (264)
T ss_pred             ------------------------------------------------------chhhhhhccccccccccCCcchhHHH
Confidence                                                                  378899999999986 5899999999


Q ss_pred             CCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcCcccccCCCCCCeEecCCCcceecCCCCCCCCCCCc---cc
Q 001653          860 RIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEE---DS  936 (1037)
Q Consensus       860 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~~~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~---~~  936 (1037)
                      .|+.|+|+.|.+. .+|..++++++|+.|.+..|.+- ..|..++.++.|+.|.+.+|+|+-..|+.++++-...   ..
T Consensus       128 tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r  205 (264)
T KOG0617|consen  128 TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMR  205 (264)
T ss_pred             HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHh
Confidence            9999999999999 89999999999999999999987 5799999999999999999999998888776543321   22


Q ss_pred             ccCCCCC
Q 001653          937 YEGNPFL  943 (1037)
Q Consensus       937 ~~gNp~l  943 (1037)
                      .+.|||.
T Consensus       206 ~E~NPwv  212 (264)
T KOG0617|consen  206 MEENPWV  212 (264)
T ss_pred             hhhCCCC
Confidence            4566665

>PLN03150 hypothetical protein; Provisional

Probab=99.34  E-value=1.8e-12  Score=153.41  Aligned_cols=114  Identities=29%  Similarity=0.452  Sum_probs=101.5

Q ss_pred             CccEEEccCCcCcCcCCCccccCCcCcCCCCCCCCccccccccccccccCCCCCCCCCCCccceEEEeecCccccccccc
Q 001653          754 EVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRI  833 (1037)
Q Consensus       754 ~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  833 (1037)
                      .++.|+|++|.++|.+|..+..+.                                                        
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~--------------------------------------------------------  442 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLR--------------------------------------------------------  442 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCC--------------------------------------------------------
Confidence            367889999999999887765533                                                        


Q ss_pred             cccccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcCcccccCC-CCCCeE
Q 001653          834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVL-NTLEVF  912 (1037)
Q Consensus       834 l~~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~~~~l-~~L~~l  912 (1037)
                        .|+.|+|++|.++|.+|..++.++.|+.|||++|+++|.+|+.++++++|+.|||++|+++|.+|..+..+ ..+..+
T Consensus       443 --~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l  520 (623)
T PLN03150        443 --HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF  520 (623)
T ss_pred             --CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence              78999999999999999999999999999999999999999999999999999999999999999998764 467899


Q ss_pred             ecCCCcceecCCC
Q 001653          913 KVAYNNLSGKIPD  925 (1037)
Q Consensus       913 ~ls~N~l~g~ip~  925 (1037)
                      ++++|...|.+|.
T Consensus       521 ~~~~N~~lc~~p~  533 (623)
T PLN03150        521 NFTDNAGLCGIPG  533 (623)
T ss_pred             EecCCccccCCCC
Confidence            9999986655553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.23  E-value=4.8e-13  Score=143.55  Aligned_cols=102  Identities=27%  Similarity=0.383  Sum_probs=46.5

Q ss_pred             CCEEECcCCcCcccCCCCCCcCccCeEEccCccccCcchhhhcCCCCccEEEcCCCcCCCCCchhhcCCCCCcEEecccc
Q 001653          660 LKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHN  739 (1037)
Q Consensus       660 L~~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  739 (1037)
                      -...|++.|++.....+.-.+..|+.+.|..|.+. .+|..+.++..|+++||+.|+++ ..|..+..++ |+.|.+++|
T Consensus        77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence            34455555555522222112444445555555444 23344444455555555555554 3444443332 444445555


Q ss_pred             cccccCchhhcCCCCccEEEccCCcC
Q 001653          740 YIKGEIPVQLCQLKEVRLIDLSHNNL  765 (1037)
Q Consensus       740 ~l~~~~p~~~~~l~~L~~L~ls~N~l  765 (1037)
                      +++ .+|..++.+..|..||.+.|.+
T Consensus       154 kl~-~lp~~ig~~~tl~~ld~s~nei  178 (722)
T KOG0532|consen  154 KLT-SLPEEIGLLPTLAHLDVSKNEI  178 (722)
T ss_pred             ccc-cCCcccccchhHHHhhhhhhhh
Confidence            544 4444444444444444444444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.17  E-value=3.5e-11  Score=136.89  Aligned_cols=122  Identities=33%  Similarity=0.429  Sum_probs=61.8

Q ss_pred             EEECCCCcCccCCcccccCCCCCCEEECcCCcCcccCCCCCCcC-ccCeEEccCccccCcchhhhcCCCCccEEEcCCCc
Q 001653          638 YIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPA-SIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNS  716 (1037)
Q Consensus       638 ~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~  716 (1037)
                      .+++..|.+.. ....+...+.++.|++.+|.++...+...... +|+.|++++|++... |..+..+++|+.|++++|+
T Consensus        97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeecccccccc-CchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhh-hhhhhccccccccccCCch
Confidence            46666666532 22233344566777777777764444333332 555555555555532 2334455555555555555


Q ss_pred             CCCCCchhhcCCCCCcEEecccccccccCchhhcCCCCccEEEccCC
Q 001653          717 LHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHN  763 (1037)
Q Consensus       717 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N  763 (1037)
                      ++ .+|...+..+.|+.|++++|+++ .+|........|+.+++++|
T Consensus       175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence            55 33333334455555555555555 44444434444445555544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.15  E-value=6.1e-11  Score=134.93  Aligned_cols=199  Identities=30%  Similarity=0.462  Sum_probs=128.5

Q ss_pred             CEEECcCCcCcccCCCCCCcCccCeEEccCccccCcchhhhcCCC-CccEEEcCCCcCCCCCchhhcCCCCCcEEecccc
Q 001653          661 KILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNP-HLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHN  739 (1037)
Q Consensus       661 ~~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  739 (1037)
                      ..++++.|.+..........+.++.|++.+|.++.+.+ .....+ +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus        96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             ceeeccccccccCchhhhcccceeEEecCCcccccCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            35677777664444444445667777777777775443 333332 6777777777777 45566777777777777777


Q ss_pred             cccccCchhhcCCCCccEEEccCCcCcCcCCCccccCCcCcCCCCCCCCccccccccccccccCCCCCCCCCCCccceEE
Q 001653          740 YIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQ  819 (1037)
Q Consensus       740 ~l~~~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  819 (1037)
                      ++. .+|...+.++.|+.|++++|+++ .+|.....                                            
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~--------------------------------------------  207 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL--------------------------------------------  207 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh--------------------------------------------
Confidence            777 56666557777777777777775 33322110                                            


Q ss_pred             EeecCccccccccccccccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcC
Q 001653          820 FTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI  899 (1037)
Q Consensus       820 ~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~i  899 (1037)
                                    ...|..+++++|.+. .++..+..+..+..+.+++|++. .+|..++.+++++.|++++|+++...
T Consensus       208 --------------~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~  271 (394)
T COG4886         208 --------------LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSIS  271 (394)
T ss_pred             --------------hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccccc
Confidence                          124566777777533 45666677777777777777776 33666677777777777777776433


Q ss_pred             cccccCCCCCCeEecCCCcceecCCC
Q 001653          900 PPQLIVLNTLEVFKVAYNNLSGKIPD  925 (1037)
Q Consensus       900 p~~~~~l~~L~~l~ls~N~l~g~ip~  925 (1037)
                      +  ++.+.+++.|++++|.++...|.
T Consensus       272 ~--~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         272 S--LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             c--ccccCccCEEeccCccccccchh
Confidence            3  66777777777777777766554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.13  E-value=1.4e-11  Score=125.32  Aligned_cols=195  Identities=24%  Similarity=0.327  Sum_probs=110.2

Q ss_pred             CccCCCCCEEeCCCCcccccccchhhHhhcCCCCcceEeCCCCc---CCCcchh-------ccCCCCCCcEeeCCCCcCC
Q 001653            6 FTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNH---FNNSIFS-------SLGGLSSLRHLSLADNRLN   75 (1037)
Q Consensus         6 f~~l~~L~~L~L~~~~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~---l~~~~~~-------~l~~l~~L~~L~Ls~n~~~   75 (1037)
                      ..++..+++|+||+|.+.-.........+.+.++|+..++|+-.   ....+|+       .+-.+++|++||||+|-+.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            34667788888888888544334445556777788888887542   2223343       3445668888888888775


Q ss_pred             CccC---ccccCCCCCCcEEECcCCccCccc------------cccccccccccceecccCCCCcccCCCchhhhcCCCC
Q 001653           76 GSID---IKGLNSLSNLEELDMTGNAIENLV------------VPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLP  140 (1037)
Q Consensus        76 ~~~~---~~~l~~l~~L~~LdLs~n~i~~~~------------~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~l~  140 (1037)
                      ..-+   .+-++++..|++|.|.+|.+.-..            ..+.......|+++..+.|.+.+.+...+-..+...+
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~  185 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP  185 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence            3321   123466777888888887664221            1122334455666666666665555555555566666


Q ss_pred             cccEEecccccccccc---chhhcccCCCCcEEEccCCcccchh---hhhhhcccccchhhccccc
Q 001653          141 SLKTLYLSHTKFKGTV---VNQKLHNFTNLEELILDESDLHVSQ---LLQSIASFTSLKHLSMQDC  200 (1037)
Q Consensus       141 ~L~~L~L~~n~~~~~~---~~~~l~~l~~L~~L~L~~~~~~~~~---~~~~l~~l~~L~~L~l~~~  200 (1037)
                      .|+.+.++.|.+....   ....+..+++|+.|+|..|.++...   +...++.+++|+++++.+|
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence            6666666666543221   1234555566666666665544332   2333344444444444444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.13  E-value=1.1e-11  Score=125.91  Aligned_cols=203  Identities=22%  Similarity=0.303  Sum_probs=120.7

Q ss_pred             hcccCCCCcEEEccCCcccchh---hhhhhcccccchhhcccccccccccCccccccccccceecccccccccCccchhc
Q 001653          160 KLHNFTNLEELILDESDLHVSQ---LLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQI  236 (1037)
Q Consensus       160 ~l~~l~~L~~L~L~~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  236 (1037)
                      .+..+++|++++|+.|.+....   +-..+.++..|++|.+.+|..+...... ++  +.|..|...  .          
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~-l~--~al~~l~~~--k----------  151 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGR-LG--RALFELAVN--K----------  151 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHH-HH--HHHHHHHHH--h----------
Confidence            4455667777777777665433   4456667788888888888665332111 00  112222110  0          


Q ss_pred             cccccCccceecccCCCCCCC--ccccccccccccccEEEccCCCCCCC----cchhhcCCCCCCEEECcCCccCcC---
Q 001653          237 VGESMPSLNFLSLTNSSLNKH--TILDQGLCQLVHLQGLYIRDNDLRDG----LPWCLANMTSLQVLYASSNQLTGN---  307 (1037)
Q Consensus       237 ~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~Ls~n~l~~~---  307 (1037)
                      -...-+.|+++....|.+...  ..+...+...+.|+.+.++.|.|...    +...+..+++|++|||.+|-++..   
T Consensus       152 k~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~  231 (382)
T KOG1909|consen  152 KAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV  231 (382)
T ss_pred             ccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH
Confidence            001234555555555554432  22334556667778888877776532    234567788888888888877643   


Q ss_pred             -CCccccCCCCCCEEECcCCCCCCCcchhc-----cCCCCCCEEEccCCcCCcc---cChhhhcCCCCCCEEEccCCcc
Q 001653          308 -ISPGLCELVLLRKLYIDNNDLRGSLPLCL-----ANLTSLRVLDVSYNQLTEN---ISSSSLMHLTSIEELILSNNHF  377 (1037)
Q Consensus       308 -~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~---i~~~~l~~l~~L~~L~L~~n~l  377 (1037)
                       +...++.+++|++|++++|.+...-..+|     ...++|++|.+.+|.++..   +....+...+.|+.|+|++|.+
T Consensus       232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence             23356667788888888888765433333     2467888888888877541   1112345577788888888877

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.10  E-value=5.2e-12  Score=135.71  Aligned_cols=214  Identities=28%  Similarity=0.383  Sum_probs=165.1

Q ss_pred             EEEeeccccccccchhHhh-cCCCCCEEEccCccccccCcccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeccC
Q 001653          541 RLDISNNQLTGEIPERMAT-GCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSD  619 (1037)
Q Consensus       541 ~L~L~~n~l~~~i~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  619 (1037)
                      .|.|++-++. ..|...+. .+.--...|++.|++. .+|..+..+..|+.+.|+.|.+. .+|..+.++..|..+|++.
T Consensus        54 ~l~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~  130 (722)
T KOG0532|consen   54 RLLLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSS  130 (722)
T ss_pred             ccccccchhh-cCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhcc
Confidence            3455555554 45543322 2344456788999987 56777777788888899998887 6788889999999999999


Q ss_pred             CccCCCCCcccCCCCCCCEEECCCCcCccCCcccccCCCCCCEEECcCCcCcccCCCCCCcCccCeEEccCccccCcchh
Q 001653          620 NHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLES  699 (1037)
Q Consensus       620 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  699 (1037)
                      |+++ ..|..++.++ |+.|.+++|+++ .+|+.++...+|..||.+.|.+....+....+.+|+.|.+..|.+...+++
T Consensus       131 NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~E  207 (722)
T KOG0532|consen  131 NQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEE  207 (722)
T ss_pred             chhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHH
Confidence            9987 6777777765 889999999987 788888888899999999999986666555688899999999988865554


Q ss_pred             hhcCCCCccEEEcCCCcCCCCCchhhcCCCCCcEEecccccccccCchhhcCCCC---ccEEEccCCc
Q 001653          700 IIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKE---VRLIDLSHNN  764 (1037)
Q Consensus       700 ~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~---L~~L~ls~N~  764 (1037)
                       +. .-.|..||+|.|+++ .+|-.|..+..|++|-|.+|.++ ..|..+|..-.   .++|+..-+.
T Consensus       208 -l~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  208 -LC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             -Hh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence             34 456889999999998 78899999999999999999998 67777764433   4566666663

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.05  E-value=8.8e-11  Score=112.92  Aligned_cols=131  Identities=26%  Similarity=0.438  Sum_probs=51.2

Q ss_pred             hcCCCCcceEeCCCCcCCCcchhccC-CCCCCcEeeCCCCcCCCccCccccCCCCCCcEEECcCCccCcccccccc-ccc
Q 001653           34 LSRLTNLKFLYLNDNHFNNSIFSSLG-GLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDF-RGL  111 (1037)
Q Consensus        34 l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~LdLs~n~i~~~~~~~~~-~~~  111 (1037)
                      +.++..+++|+|++|.|..  .+.++ .+.+|+.|++++|.++ .++  .+..+++|++|++++|.|+.+.  +.+ ..+
T Consensus        15 ~~n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~~i~--~~l~~~l   87 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRISSIS--EGLDKNL   87 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S-C--HHHHHH-
T ss_pred             ccccccccccccccccccc--ccchhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCCccc--cchHHhC
Confidence            4556678888888888875  34565 5778888888888887 444  5777888888888888888762  223 457


Q ss_pred             cccceecccCCCCcccCCCchhhhcCCCCcccEEeccccccccccc--hhhcccCCCCcEEEccC
Q 001653          112 RKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVV--NQKLHNFTNLEELILDE  174 (1037)
Q Consensus       112 ~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~--~~~l~~l~~L~~L~L~~  174 (1037)
                      +.|+.|++++|.|.++..   ...++.+++|++|++.+|.+.....  ...+..+|+|+.||-..
T Consensus        88 p~L~~L~L~~N~I~~l~~---l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   88 PNLQELYLSNNKISDLNE---LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             TT--EEE-TTS---SCCC---CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             CcCCEEECcCCcCCChHH---hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            788888888888876654   3557788999999999988763311  24567889999887543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=4.7e-11  Score=124.72  Aligned_cols=216  Identities=21%  Similarity=0.287  Sum_probs=132.4

Q ss_pred             cCCCCcceEeCCCCcCCCcch-hccCCCCCCcEeeCCCCcCCCccCc-cccCCCCCCcEEECcCCccCcccccccccccc
Q 001653           35 SRLTNLKFLYLNDNHFNNSIF-SSLGGLSSLRHLSLADNRLNGSIDI-KGLNSLSNLEELDMTGNAIENLVVPKDFRGLR  112 (1037)
Q Consensus        35 ~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~~~~~~~~-~~l~~l~~L~~LdLs~n~i~~~~~~~~~~~~~  112 (1037)
                      ++++.|++..|.++.+..... +....+++++.|||++|-++.-.+. .....+++|+.|+++.|.+........-..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            466777777777776653211 3556677777777777766522221 12355777777777777665443333344566


Q ss_pred             ccceecccCCCCcccCCCchhhhcCCCCcccEEeccccccccccchhhcccCCCCcEEEccCCcccchhhhhhhcccccc
Q 001653          113 KLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSL  192 (1037)
Q Consensus       113 ~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L  192 (1037)
                      .++.|.++.|+++.   ..+...+..+|+|+.|+|..|... .+......-++.|++|+|++|.+...+-....+.+|.|
T Consensus       198 ~lK~L~l~~CGls~---k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L  273 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSW---KDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGL  273 (505)
T ss_pred             hhheEEeccCCCCH---HHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccch
Confidence            77777777777762   344455667788888888877421 11122334566778888888877666656667778888


Q ss_pred             hhhcccccccccccCccc-----cccccccceecccccccccCccchhccccccCccceecccCCCCCC
Q 001653          193 KHLSMQDCVLKGALHGQD-----FLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNK  256 (1037)
Q Consensus       193 ~~L~l~~~~~~~~~~~~~-----~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  256 (1037)
                      +.|+++.|.+........     ...+++|++|+++.|++..-..+-.  -..+++|+.|.+..+.+++
T Consensus       274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~--l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNH--LRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccch--hhccchhhhhhcccccccc
Confidence            888888876654432222     3567888888888776522111100  1235677888877776654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.01  E-value=9.8e-11  Score=115.82  Aligned_cols=85  Identities=27%  Similarity=0.287  Sum_probs=51.1

Q ss_pred             cccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcC-cccccCCCCCCeEec
Q 001653          836 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI-PPQLIVLNTLEVFKV  914 (1037)
Q Consensus       836 ~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~i-p~~~~~l~~L~~l~l  914 (1037)
                      +|+.||||+|.++ .+-..-..+-+.+.|+|++|.|..  -+.++.+=+|..||+++|+|.... -..+++++.|+.+.|
T Consensus       330 ~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L  406 (490)
T KOG1259|consen  330 QLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRL  406 (490)
T ss_pred             cceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhh
Confidence            4445555555554 333333445556667777776652  234556666777777777775432 245677778888888


Q ss_pred             CCCcceecC
Q 001653          915 AYNNLSGKI  923 (1037)
Q Consensus       915 s~N~l~g~i  923 (1037)
                      -+|++++.+
T Consensus       407 ~~NPl~~~v  415 (490)
T KOG1259|consen  407 TGNPLAGSV  415 (490)
T ss_pred             cCCCccccc
Confidence            888887643

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=1.3e-10  Score=121.42  Aligned_cols=116  Identities=21%  Similarity=0.284  Sum_probs=78.7

Q ss_pred             CCCCCCcEEECcCCccCccccccccccccccceecccCCCCcccCCCchhhhcCCCCcccEEeccccccccccchhhccc
Q 001653           84 NSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHN  163 (1037)
Q Consensus        84 ~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~  163 (1037)
                      +++.+|++..|.++.+......+....+.+.+.|||++|-+..+  ..+.+....+|+|+.|+|+.|.+........-..
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw--~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~  195 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNW--FPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL  195 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhH--HHHHHHHHhcccchhcccccccccCCccccchhh
Confidence            34556666666666555432223455666666677777666543  2344556778888999998888765444444446


Q ss_pred             CCCCcEEEccCCcccchhhhhhhcccccchhhcccccc
Q 001653          164 FTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCV  201 (1037)
Q Consensus       164 l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  201 (1037)
                      ++.|+.|.++.|.++..++...+..+|+|+.|++..|.
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~  233 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE  233 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc
Confidence            78888888888888877777777778888888887774

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.99  E-value=2.9e-10  Score=109.33  Aligned_cols=105  Identities=37%  Similarity=0.514  Sum_probs=30.1

Q ss_pred             CCCcceEeCCCCcCCCcchhccCCCCCCcEeeCCCCcCCCccCcccc-CCCCCCcEEECcCCccCccccccccccccccc
Q 001653           37 LTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGL-NSLSNLEELDMTGNAIENLVVPKDFRGLRKLN  115 (1037)
Q Consensus        37 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~L~  115 (1037)
                      +.+|+.||+++|.++.  .+.+..+++|++|++++|+++ .++. .+ ..+++|++|++++|+|.+...-..+..++.|+
T Consensus        41 l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~-~i~~-~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~  116 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRIS-SISE-GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLR  116 (175)
T ss_dssp             -TT--EEE-TTS--S----TT----TT--EEE--SS----S-CH-HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--
T ss_pred             hcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCC-cccc-chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcc
Confidence            4445555555555443  123444455555555555554 2322 22 23455555555555544443333344444555


Q ss_pred             eecccCCCCcccCCCchhhhcCCCCcccEEe
Q 001653          116 TLYLGGSGIPRIDGSKVLQSIGSLPSLKTLY  146 (1037)
Q Consensus       116 ~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~  146 (1037)
                      .|++.+|.+.... ..-...+..+|+|+.||
T Consensus       117 ~L~L~~NPv~~~~-~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen  117 VLSLEGNPVCEKK-NYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             EEE-TT-GGGGST-THHHHHHHH-TT-SEET
T ss_pred             eeeccCCcccchh-hHHHHHHHHcChhheeC
Confidence            5555555444321 22222344445555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.84  E-value=7e-10  Score=109.88  Aligned_cols=133  Identities=23%  Similarity=0.199  Sum_probs=89.4

Q ss_pred             cccccccccEEEccCCCCCCCcchhhcCCCCCCEEECcCCccCcCCCccccCCCCCCEEECcCCCCCCCcchhccCCCCC
Q 001653          263 GLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSL  342 (1037)
Q Consensus       263 ~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  342 (1037)
                      .+..+..|+++|+++|.|+. +.++..-.|.++.|++|+|.+...  ..+..+++|++|||++|.++ .+...-.++-+.
T Consensus       279 ~~dTWq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI  354 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI  354 (490)
T ss_pred             ecchHhhhhhccccccchhh-hhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence            34455677777888777765 556677777788888888877744  23677777888888887776 333344466777


Q ss_pred             CEEEccCCcCCcccChhhhcCCCCCCEEEccCCcccccccCcccccCCCCcceeeCCCccc
Q 001653          343 RVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQ  403 (1037)
Q Consensus       343 ~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~l~l~~~~~  403 (1037)
                      ++|.|+.|.+.. +  +.++++-+|..||+++|++... .......+++-|+.+.+..|.+
T Consensus       355 KtL~La~N~iE~-L--SGL~KLYSLvnLDl~~N~Ie~l-deV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  355 KTLKLAQNKIET-L--SGLRKLYSLVNLDLSSNQIEEL-DEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             eeeehhhhhHhh-h--hhhHhhhhheeccccccchhhH-HHhcccccccHHHHHhhcCCCc
Confidence            777787777653 2  2466777777788888877433 2344566777777777777665

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.78  E-value=4.7e-09  Score=82.79  Aligned_cols=60  Identities=45%  Similarity=0.608  Sum_probs=37.8

Q ss_pred             cccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcC
Q 001653          836 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL  895 (1037)
Q Consensus       836 ~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l  895 (1037)
                      .|+.|++++|+++...+..|..+++|++|++++|+++...|+.|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455666666666644445666666666666666666666666666666666666666654

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.77  E-value=3.7e-09  Score=83.44  Aligned_cols=61  Identities=39%  Similarity=0.549  Sum_probs=57.6

Q ss_pred             CCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcCcccccCCCCCCeEecCCCcc
Q 001653          859 TRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNL  919 (1037)
Q Consensus       859 ~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~~~~l~~L~~l~ls~N~l  919 (1037)
                      ++|++|++++|+|+...++.|.++++|++||+++|+++...|..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4689999999999988889999999999999999999999899999999999999999986

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=5.7e-10  Score=110.66  Aligned_cols=110  Identities=23%  Similarity=0.307  Sum_probs=71.7

Q ss_pred             CCCcEEECcCCccCccccccccccccccceecccCCCCcccCCCchhhhcCCCCcccEEeccccc-cccccchhhcccCC
Q 001653           87 SNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTK-FKGTVVNQKLHNFT  165 (1037)
Q Consensus        87 ~~L~~LdLs~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~~l~~l~  165 (1037)
                      ++||+||||...|+.......+..+++|+.|.+.++.+.    ..+...+++-.+|+.|+++.+. ++.....-.+++++
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld----D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs  260 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD----DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCS  260 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC----cHHHHHHhccccceeeccccccccchhHHHHHHHhhh
Confidence            358888888887765444456677788888888888776    5666677778888888888774 33333334566777


Q ss_pred             CCcEEEccCCcccchhhhhhhccc-ccchhhccccc
Q 001653          166 NLEELILDESDLHVSQLLQSIASF-TSLKHLSMQDC  200 (1037)
Q Consensus       166 ~L~~L~L~~~~~~~~~~~~~l~~l-~~L~~L~l~~~  200 (1037)
                      .|++|+++||....+.+...++.. ++|+.|++++|
T Consensus       261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~  296 (419)
T KOG2120|consen  261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGY  296 (419)
T ss_pred             hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence            777777777765554433333333 34555555554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.71  E-value=1.6e-09  Score=123.12  Aligned_cols=225  Identities=25%  Similarity=0.234  Sum_probs=121.3

Q ss_pred             cCCCCCCCEEECCCCcCccCCcccccCCCCCCEEECcCCcCcccCCCCCCcCccCeEEccCccccCcchhhhcCCCCccE
Q 001653          630 LGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVT  709 (1037)
Q Consensus       630 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  709 (1037)
                      +..+++|..|++.+|++.. +...+..+.+|+.|++++|.|+...+ .-.++.|+.|++++|.++..  ..+..++.|+.
T Consensus        91 l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~  166 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDI--SGLESLKSLKL  166 (414)
T ss_pred             cccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc-hhhccchhhheeccCcchhc--cCCccchhhhc
Confidence            3344444555555554442 11114445555555555555543222 11133355555555555533  23334567777


Q ss_pred             EEcCCCcCCCCCc-hhhcCCCCCcEEecccccccccCchhhcCCCCccEEEccCCcCcCcCCCccccCCcCcCCCCCCCC
Q 001653          710 LDLSYNSLHGSIP-NRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAP  788 (1037)
Q Consensus       710 L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~~~~  788 (1037)
                      +++++|.+...-+ . ...+.+++.+++.+|.+...  ..+..+..+..+++..|.++-.-+..                
T Consensus       167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~----------------  227 (414)
T KOG0531|consen  167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGLN----------------  227 (414)
T ss_pred             ccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCcc----------------
Confidence            7777777764433 1 45666777777777777522  23333444444566666664110000                


Q ss_pred             ccccccccccccccCCCCCCCCCCCccceEEEeecCccccccccccc--cccEEEccCCcccccCCccccCcCCCCEEEc
Q 001653          789 TSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILT--SMSGIDLSCNKLTGEIPTQIGYLTRIHALNL  866 (1037)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~L  866 (1037)
                                                                  .+.  .++.+++++|.+. .++..+..+..+..|++
T Consensus       228 --------------------------------------------~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~  262 (414)
T KOG0531|consen  228 --------------------------------------------ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDL  262 (414)
T ss_pred             --------------------------------------------cchhHHHHHHhcccCccc-cccccccccccccccch
Confidence                                                        001  2567777788777 44456667777788888


Q ss_pred             CCCccccchhhhhhcCccCCeEeCCCCcCCCc---Cccc-ccCCCCCCeEecCCCcceecCC
Q 001653          867 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK---IPPQ-LIVLNTLEVFKVAYNNLSGKIP  924 (1037)
Q Consensus       867 s~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~---ip~~-~~~l~~L~~l~ls~N~l~g~ip  924 (1037)
                      +.|+++..-.  +.....+..+.++.|.+...   .... ....+.+....+.+|......+
T Consensus       263 ~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  263 SSNRISNLEG--LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             hhcccccccc--ccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            8887774432  34455666677777776522   1111 4455667777777777766544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.70  E-value=2.3e-08  Score=120.99  Aligned_cols=151  Identities=25%  Similarity=0.316  Sum_probs=93.1

Q ss_pred             CCCCCEEeCCCCcccccccchhhHhhcCCCCcceEeCCCCc--CCCcchhccCCCCCCcEeeCCCCcCCCccCccccCCC
Q 001653            9 FQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNH--FNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSL   86 (1037)
Q Consensus         9 l~~L~~L~L~~~~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~--l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l   86 (1037)
                      ....|.+.+-++.+.....      =..++.|++|-+.+|.  +.....+.|..++.|++|||++|.-.+.+|. .+++|
T Consensus       522 ~~~~rr~s~~~~~~~~~~~------~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~L  594 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIEHIAG------SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGEL  594 (889)
T ss_pred             hhheeEEEEeccchhhccC------CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhhh
Confidence            3445556666565532111      1345567777777775  4444455677788888888887766666775 77888


Q ss_pred             CCCcEEECcCCccCccccccccccccccceecccCCCCcccCCCchhhhcCCCCcccEEeccccccc-cccchhhcccCC
Q 001653           87 SNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFK-GTVVNQKLHNFT  165 (1037)
Q Consensus        87 ~~L~~LdLs~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~L~~n~~~-~~~~~~~l~~l~  165 (1037)
                      .+||+|+++++.+..+  |..+..++.|..|++..+...    ..++.....+++|++|.+..-... +......+.+++
T Consensus       595 i~LryL~L~~t~I~~L--P~~l~~Lk~L~~Lnl~~~~~l----~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le  668 (889)
T KOG4658|consen  595 VHLRYLDLSDTGISHL--PSGLGNLKKLIYLNLEVTGRL----ESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLE  668 (889)
T ss_pred             hhhhcccccCCCcccc--chHHHHHHhhheecccccccc----ccccchhhhcccccEEEeeccccccchhhHHhhhccc
Confidence            8888888888877765  777777778887777776543    122333455788888887654311 122223344555


Q ss_pred             CCcEEEc
Q 001653          166 NLEELIL  172 (1037)
Q Consensus       166 ~L~~L~L  172 (1037)
                      +|+.+..
T Consensus       669 ~L~~ls~  675 (889)
T KOG4658|consen  669 HLENLSI  675 (889)
T ss_pred             chhhhee
Confidence            5555544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.64  E-value=3.8e-09  Score=120.09  Aligned_cols=244  Identities=25%  Similarity=0.255  Sum_probs=144.6

Q ss_pred             CCCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccCccccccCcccccCCCCCcEEE
Q 001653          513 PGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQ  592 (1037)
Q Consensus       513 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  592 (1037)
                      ..++.+++..|.+.. +-..+..+++|+.+++.+|++. .+...+ ..+++|++|++++|.|+...  .+..++.|+.|+
T Consensus        72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l-~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~  146 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLL-SSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN  146 (414)
T ss_pred             HhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccch-hhhhcchheecccccccccc--chhhccchhhhe
Confidence            345555555555542 2233555566666666666665 333321 23666666666666666443  334455577777


Q ss_pred             CcCCcCCCCCCccccCCCCCCEEeccCCccCCCCC-cccCCCCCCCEEECCCCcCccCCcccccCCCCCCEEECcCCcCc
Q 001653          593 LDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIP-RWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIF  671 (1037)
Q Consensus       593 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~  671 (1037)
                      +++|.++..  ..+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+..  ...+..+..+..+++..|.+.
T Consensus       147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~  221 (414)
T KOG0531|consen  147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKIS  221 (414)
T ss_pred             eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccce
Confidence            777776643  234446677777777777764433 1 4566777777777777653  233334445555577777776


Q ss_pred             ccCCCCCCcC--ccCeEEccCccccCcchhhhcCCCCccEEEcCCCcCCCCCchhhcCCCCCcEEeccccccccc---Cc
Q 001653          672 GTLPSCFSPA--SIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGE---IP  746 (1037)
Q Consensus       672 ~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~p  746 (1037)
                      ..-+. ....  .|+.+++++|.+.... ..+..+..+..||+++|++...  ..+...+.+..+....|++...   ..
T Consensus       222 ~~~~l-~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (414)
T KOG0531|consen  222 KLEGL-NELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQ  297 (414)
T ss_pred             eccCc-ccchhHHHHHHhcccCcccccc-ccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhc
Confidence            33321 1122  2777888888776432 4556667888888888887743  2345566677777777776622   12


Q ss_pred             hh-hcCCCCccEEEccCCcCcCcCC
Q 001653          747 VQ-LCQLKEVRLIDLSHNNLSGRIP  770 (1037)
Q Consensus       747 ~~-~~~l~~L~~L~ls~N~l~g~ip  770 (1037)
                      .. ....+.++.+.+..|+.....+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  298 EYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             cccccccccccccccccCccccccc
Confidence            22 5566778888888887765444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.64  E-value=3e-09  Score=110.87  Aligned_cols=236  Identities=22%  Similarity=0.169  Sum_probs=114.6

Q ss_pred             CCcEeeCCCCcCCCccCcc-ccCCCCCCcEEECcCCc-cCccccccccccccccceecccCC-CCcccCCCchhh-hcCC
Q 001653           63 SLRHLSLADNRLNGSIDIK-GLNSLSNLEELDMTGNA-IENLVVPKDFRGLRKLNTLYLGGS-GIPRIDGSKVLQ-SIGS  138 (1037)
Q Consensus        63 ~L~~L~Ls~n~~~~~~~~~-~l~~l~~L~~LdLs~n~-i~~~~~~~~~~~~~~L~~L~L~~n-~i~~~~~~~~~~-~l~~  138 (1037)
                      .|+.|.+.+++-.+.-+.. ...+++++++|++.++. +++.........+++++.+++..| .++    ....+ ....
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT----~~~Lk~la~g  214 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSIT----DVSLKYLAEG  214 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhH----HHHHHHHHHh
Confidence            4566666665543222211 22456666666666653 222222334455666666666663 333    12222 2345


Q ss_pred             CCcccEEeccccc-cccccchhhcccCCCCcEEEccCCcccch-hhhhhhcccccchhhcccccccccccCcccc-cccc
Q 001653          139 LPSLKTLYLSHTK-FKGTVVNQKLHNFTNLEELILDESDLHVS-QLLQSIASFTSLKHLSMQDCVLKGALHGQDF-LKFK  215 (1037)
Q Consensus       139 l~~L~~L~L~~n~-~~~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~l~  215 (1037)
                      +++|++++++++. +++........+++.++++.+.+|..... .+...-+..+.+.++++..|...+......+ ..+.
T Consensus       215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~  294 (483)
T KOG4341|consen  215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH  294 (483)
T ss_pred             hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence            6777777777764 33322233445556666666655532221 1222223345556666666644332222222 3466


Q ss_pred             ccceecccccccccCccchhccccccCccceecccCCCCCCCccccccccccccccEEEccCCCCCC--CcchhhcCCCC
Q 001653          216 NLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRD--GLPWCLANMTS  293 (1037)
Q Consensus       216 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~l~~l~~  293 (1037)
                      +|+.|+.+++.. .........++..++|+.+.+..|+......+..--.++++|+.+++..+....  .+...-.+++.
T Consensus       295 ~lq~l~~s~~t~-~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~  373 (483)
T KOG4341|consen  295 ALQVLCYSSCTD-ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR  373 (483)
T ss_pred             HhhhhcccCCCC-CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence            777777765543 333344445566677777777776532211122222345666666666554321  11111234556


Q ss_pred             CCEEECcCCc
Q 001653          294 LQVLYASSNQ  303 (1037)
Q Consensus       294 L~~L~Ls~n~  303 (1037)
                      |++|.+++|.
T Consensus       374 lr~lslshce  383 (483)
T KOG4341|consen  374 LRVLSLSHCE  383 (483)
T ss_pred             hccCChhhhh
Confidence            6666666554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.62  E-value=2e-08  Score=121.45  Aligned_cols=132  Identities=27%  Similarity=0.306  Sum_probs=101.3

Q ss_pred             cccccEEEccCCC--CCCCcchhhcCCCCCCEEECcCCccCcCCCccccCCCCCCEEECcCCCCCCCcchhccCCCCCCE
Q 001653          267 LVHLQGLYIRDND--LRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRV  344 (1037)
Q Consensus       267 l~~L~~L~L~~n~--i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  344 (1037)
                      ++.|++|-+..|.  +.......|..++.|++|||++|.-.+.+|..++.+-+||+|++++..+. .+|..++++..|.+
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY  622 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence            4578888888886  55555666888999999999998888889999999999999999999998 78999999999999


Q ss_pred             EEccCCcCCcccChhhhcCCCCCCEEEccCCcccccccCcccccCCCCcceeeCCC
Q 001653          345 LDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEI  400 (1037)
Q Consensus       345 L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~l~l~~  400 (1037)
                      |++..+.....+ +.....+++|++|.+..-...........+.+++.|+.+....
T Consensus       623 Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  623 LNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             eccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            999988765544 3366679999999887765323333344455666666555433

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=1.7e-09  Score=107.32  Aligned_cols=159  Identities=23%  Similarity=0.268  Sum_probs=72.6

Q ss_pred             CcceEeCCCCcCCCc-chhccCCCCCCcEeeCCCCcCCCccCccccCCCCCCcEEECcCC-ccCccccccccccccccce
Q 001653           39 NLKFLYLNDNHFNNS-IFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGN-AIENLVVPKDFRGLRKLNT  116 (1037)
Q Consensus        39 ~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~LdLs~n-~i~~~~~~~~~~~~~~L~~  116 (1037)
                      .|++||||...++.. +-..++.+.+|+.|.|.++++.+.+-. .+++-.+|+.||++.+ .++.....-.+..++.|..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            355555555555421 334455555555555555555544433 4555555555555544 2332222233444555555


Q ss_pred             ecccCCCCcccCCCchhhhcCCCCcccEEeccccc--cccccchhhcccCCCCcEEEccCCcccchhhhhhhcccccchh
Q 001653          117 LYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTK--FKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKH  194 (1037)
Q Consensus       117 L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~L~~n~--~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~  194 (1037)
                      |++++|.++..........+  -++|+.|+|+++.  +...-......++++|..|||+++..-..+....+.+++.|++
T Consensus       265 LNlsWc~l~~~~Vtv~V~hi--se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~  342 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHI--SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH  342 (419)
T ss_pred             cCchHhhccchhhhHHHhhh--chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence            55555544422111111111  1345555555542  1111111122345555555555554433444455555555555


Q ss_pred             hccccc
Q 001653          195 LSMQDC  200 (1037)
Q Consensus       195 L~l~~~  200 (1037)
                      |.+++|
T Consensus       343 lSlsRC  348 (419)
T KOG2120|consen  343 LSLSRC  348 (419)
T ss_pred             eehhhh
Confidence            555555

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.52  E-value=5.8e-08  Score=95.37  Aligned_cols=195  Identities=19%  Similarity=0.281  Sum_probs=121.3

Q ss_pred             CCCCCEEeCCCCcccccccchhhHhhcCCCCcceEeCCCCcC---CCc-------chhccCCCCCCcEeeCCCCcCCCcc
Q 001653            9 FQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHF---NNS-------IFSSLGGLSSLRHLSLADNRLNGSI   78 (1037)
Q Consensus         9 l~~L~~L~L~~~~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l---~~~-------~~~~l~~l~~L~~L~Ls~n~~~~~~   78 (1037)
                      +..++.+|||+|.|...........+.+-++|+..++++-..   .+.       +...+-+|++|+..+||.|-+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            567888999999886443334444556677888888886532   122       2345678888899999988887555


Q ss_pred             Cc---cccCCCCCCcEEECcCCccCcccc------------ccccccccccceecccCCCCcccCCCchhhhcCCCCccc
Q 001653           79 DI---KGLNSLSNLEELDMTGNAIENLVV------------PKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLK  143 (1037)
Q Consensus        79 ~~---~~l~~l~~L~~LdLs~n~i~~~~~------------~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~  143 (1037)
                      |.   +-+++-+.|++|.+++|.+.-+.-            .+.....+.|+.+....|.+..-+...+...+.....|+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk  188 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK  188 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence            43   335667788888888886543211            112344566777777777776544444444455556777


Q ss_pred             EEeccccccccccc----hhhcccCCCCcEEEccCCcccchh---hhhhhcccccchhhcccccccc
Q 001653          144 TLYLSHTKFKGTVV----NQKLHNFTNLEELILDESDLHVSQ---LLQSIASFTSLKHLSMQDCVLK  203 (1037)
Q Consensus       144 ~L~L~~n~~~~~~~----~~~l~~l~~L~~L~L~~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~  203 (1037)
                      ++.+..|.+.....    ...+..+.+|+.|++..|.++..+   +...++..+.|++|.+.+|...
T Consensus       189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence            77777776653311    123445667777777777655432   3445555566677777666543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.43  E-value=9e-08  Score=95.36  Aligned_cols=111  Identities=24%  Similarity=0.275  Sum_probs=73.9

Q ss_pred             CCCcEEECcCCccCccccc-cccccccccceecccCCCCcccCCCchhhhcCCCCcccEEeccccccccccchhhcccCC
Q 001653           87 SNLEELDMTGNAIENLVVP-KDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFT  165 (1037)
Q Consensus        87 ~~L~~LdLs~n~i~~~~~~-~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~  165 (1037)
                      ..++-|-+.++.|...... .....++..+.+||.+|.|+++.  ++...+..+|.|++|+++.|++...+...- ....
T Consensus        45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWs--eI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~  121 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWS--EIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLK  121 (418)
T ss_pred             cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHH--HHHHHHhcCccceEeeccCCcCCCccccCc-cccc
Confidence            3445555556655544322 23345677888899999888663  455668899999999999999875543221 4567


Q ss_pred             CCcEEEccCCcccchhhhhhhcccccchhhccccc
Q 001653          166 NLEELILDESDLHVSQLLQSIASFTSLKHLSMQDC  200 (1037)
Q Consensus       166 ~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~  200 (1037)
                      +|++|.|.+..+.-......+..+|.+++|+++.|
T Consensus       122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            89999998887655555555555666666666554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.43  E-value=1e-07  Score=94.89  Aligned_cols=187  Identities=21%  Similarity=0.268  Sum_probs=105.0

Q ss_pred             CCCEEeCCCCcccccccchhhHhh-cCCCCcceEeCCCCcCCC--cchhccCCCCCCcEeeCCCCcCCCccCcccc-CCC
Q 001653           11 QLESLDLSWNNIAGCVQNESLERL-SRLTNLKFLYLNDNHFNN--SIFSSLGGLSSLRHLSLADNRLNGSIDIKGL-NSL   86 (1037)
Q Consensus        11 ~L~~L~L~~~~i~~~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-~~l   86 (1037)
                      .++.|.+.++.|.....-   +.| ..++++++|||.+|.+++  ++...+.+|++|++|+|+.|++...|..  + .-+
T Consensus        46 a~ellvln~~~id~~gd~---~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~  120 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDV---MLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPL  120 (418)
T ss_pred             chhhheecCCCCCcchhH---HHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--Ccccc
Confidence            444566666666433221   222 367778888888888865  3556677888888888888887644432  2 345


Q ss_pred             CCCcEEECcCCccCccccccccccccccceecccCCCCcccC--CC---chhhh--------------------cCCCCc
Q 001653           87 SNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRID--GS---KVLQS--------------------IGSLPS  141 (1037)
Q Consensus        87 ~~L~~LdLs~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~--~~---~~~~~--------------------l~~l~~  141 (1037)
                      .+|++|-|.+..+.-.........++.++.|.++.|++..+.  +.   .|...                    ..-.|+
T Consensus       121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn  200 (418)
T KOG2982|consen  121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN  200 (418)
T ss_pred             cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence            678888887776655444555666777777777777433211  11   11111                    112234


Q ss_pred             ccEEeccccccccccchhhcccCCCCcEEEccCCcccchhhhhhhcccccchhhccccccc
Q 001653          142 LKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVL  202 (1037)
Q Consensus       142 L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  202 (1037)
                      +..+-+..|.+......+....++.+..|+|..+++..-.-.+.+.++++|..|.+.++..
T Consensus       201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl  261 (418)
T KOG2982|consen  201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL  261 (418)
T ss_pred             chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence            4444444444444333444455555555566655555444445555556655555555433

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.39  E-value=2.4e-08  Score=104.37  Aligned_cols=264  Identities=18%  Similarity=0.116  Sum_probs=134.4

Q ss_pred             CcceEeCCCCcCCC--cchhccCCCCCCcEeeCCCCcCCCccC-ccccCCCCCCcEEECcCC-ccCcccccccccccccc
Q 001653           39 NLKFLYLNDNHFNN--SIFSSLGGLSSLRHLSLADNRLNGSID-IKGLNSLSNLEELDMTGN-AIENLVVPKDFRGLRKL  114 (1037)
Q Consensus        39 ~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~~~l~~l~~L~~LdLs~n-~i~~~~~~~~~~~~~~L  114 (1037)
                      .|+.|.++++.-.+  .+-..-.+++++++|++.++....... ...-.++++|++|++..+ .+++.........+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            35555555553222  122334455555555555554221111 111234555555555552 33333222234445555


Q ss_pred             ceecccCCCCcccCCCchhhhcCCCCcccEEecccccccc-ccchhhcccCCCCcEEEccCC-cccchhhhhhhcccccc
Q 001653          115 NTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKG-TVVNQKLHNFTNLEELILDES-DLHVSQLLQSIASFTSL  192 (1037)
Q Consensus       115 ~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~~l~~l~~L~~L~L~~~-~~~~~~~~~~l~~l~~L  192 (1037)
                      +.++++++.--  .+..+-.....++.++.+.+.+|.-.+ ......-+.+.-+.++++..+ .+++.++...-..+..|
T Consensus       219 ~~lNlSwc~qi--~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l  296 (483)
T KOG4341|consen  219 KYLNLSWCPQI--SGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL  296 (483)
T ss_pred             HHhhhccCchh--hcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence            55555555321  111122223444555555555553111 011111123334455554444 23444555555667777


Q ss_pred             hhhcccccccccccCccc-cccccccceecccccccccCccchhccccccCccceecccCCCCCCCcccccccccccccc
Q 001653          193 KHLSMQDCVLKGALHGQD-FLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQ  271 (1037)
Q Consensus       193 ~~L~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~  271 (1037)
                      +.|..++|...+...... .....+|++|.++.++. .....++.+...++.|+.+++..+.......+...-.+++.|+
T Consensus       297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~-fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr  375 (483)
T KOG4341|consen  297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ-FSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR  375 (483)
T ss_pred             hhhcccCCCCCchHHHHHHhcCCCceEEEeccccch-hhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence            788777775433322222 35667888888887764 3444556667778888888888887654444555556788899


Q ss_pred             EEEccCCCCCCCc-----chhhcCCCCCCEEECcCCccC
Q 001653          272 GLYIRDNDLRDGL-----PWCLANMTSLQVLYASSNQLT  305 (1037)
Q Consensus       272 ~L~L~~n~i~~~~-----~~~l~~l~~L~~L~Ls~n~l~  305 (1037)
                      .+.++++......     ...-..+..|+.+.|+++..+
T Consensus       376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i  414 (483)
T KOG4341|consen  376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI  414 (483)
T ss_pred             cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence            9988877532211     112234555666666666543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.32  E-value=5.7e-08  Score=85.41  Aligned_cols=58  Identities=22%  Similarity=0.444  Sum_probs=31.6

Q ss_pred             ccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCC
Q 001653          837 MSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH  896 (1037)
Q Consensus       837 l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~  896 (1037)
                      ++.++|++|.|+ .+|.++..++.|+.||++.|.|. ..|..|..|.++-.||.-.|.+.
T Consensus        79 ~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   79 ATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            344555555555 45555555555555555555555 44445555555555555555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.32  E-value=7.8e-09  Score=114.61  Aligned_cols=116  Identities=29%  Similarity=0.297  Sum_probs=86.5

Q ss_pred             ccccccccccccccEEEccCCCCCCCcchhhcCCCCCCEEECcCCccCcCCCccccCCCCCCEEECcCCCCCCCcchhcc
Q 001653          258 TILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLA  337 (1037)
Q Consensus       258 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  337 (1037)
                      ..++.++.-+++|+.|+|++|+++...  .+..+++|++|||++|.+....--...++. |..|++++|.++..  ..+.
T Consensus       177 ~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie  251 (1096)
T KOG1859|consen  177 VLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIE  251 (1096)
T ss_pred             HhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHH
Confidence            456677888889999999999987633  688899999999999988843222333444 88899999988743  3467


Q ss_pred             CCCCCCEEEccCCcCCcccChhhhcCCCCCCEEEccCCccc
Q 001653          338 NLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFF  378 (1037)
Q Consensus       338 ~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~  378 (1037)
                      ++.+|+.||+++|-+.+.-.-..+..+..|+.|+|.+|.+.
T Consensus       252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            88899999999998776333334566778888899998873

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.29  E-value=2e-08  Score=111.42  Aligned_cols=160  Identities=25%  Similarity=0.351  Sum_probs=94.9

Q ss_pred             CCccCCCCCEEeCCCCcccccccchhhHhhc----CCC--------------------------CcceEeCCCCcCCCcc
Q 001653            5 LFTPFQQLESLDLSWNNIAGCVQNESLERLS----RLT--------------------------NLKFLYLNDNHFNNSI   54 (1037)
Q Consensus         5 ~f~~l~~L~~L~L~~~~i~~~~~~~~~~~l~----~l~--------------------------~L~~L~Ls~n~l~~~~   54 (1037)
                      .+.+|+.||+|.|.++.+.-.   .++..+.    ++.                          .|..-+.+.|.+. .+
T Consensus       104 ~ifpF~sLr~LElrg~~L~~~---~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~m  179 (1096)
T KOG1859|consen  104 SIFPFRSLRVLELRGCDLSTA---KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LM  179 (1096)
T ss_pred             eeccccceeeEEecCcchhhh---hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hH
Confidence            456788999999999887521   1111110    000                          2233333444443 34


Q ss_pred             hhccCCCCCCcEeeCCCCcCCCccCccccCCCCCCcEEECcCCccCccccccccccccccceecccCCCCcccCCCchhh
Q 001653           55 FSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQ  134 (1037)
Q Consensus        55 ~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~  134 (1037)
                      .+++.-+++|++|+|++|++. .  .+.+..+++|++|||++|.+..+. ......++ |.+|.+++|.++.+.+     
T Consensus       180 D~SLqll~ale~LnLshNk~~-~--v~~Lr~l~~LkhLDlsyN~L~~vp-~l~~~gc~-L~~L~lrnN~l~tL~g-----  249 (1096)
T KOG1859|consen  180 DESLQLLPALESLNLSHNKFT-K--VDNLRRLPKLKHLDLSYNCLRHVP-QLSMVGCK-LQLLNLRNNALTTLRG-----  249 (1096)
T ss_pred             HHHHHHHHHhhhhccchhhhh-h--hHHHHhcccccccccccchhcccc-ccchhhhh-heeeeecccHHHhhhh-----
Confidence            555666677777777777776 2  235677777777777777776552 12222333 6677777777664433     


Q ss_pred             hcCCCCcccEEeccccccccccchhhcccCCCCcEEEccCCcccc
Q 001653          135 SIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHV  179 (1037)
Q Consensus       135 ~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~  179 (1037)
                       +.++++|+.||+++|-+.+......+..+..|+.|.|.+|.+..
T Consensus       250 -ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  250 -IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             -HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence             56677777777777766655544555566666666777666543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.00  E-value=1.9e-06  Score=84.95  Aligned_cols=103  Identities=19%  Similarity=0.298  Sum_probs=66.8

Q ss_pred             hHhhcCCCCcceEeCCCCcCCCc----chhccCCCCCCcEeeCCCCcCCC---ccC------ccccCCCCCCcEEECcCC
Q 001653           31 LERLSRLTNLKFLYLNDNHFNNS----IFSSLGGLSSLRHLSLADNRLNG---SID------IKGLNSLSNLEELDMTGN   97 (1037)
Q Consensus        31 ~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~~~~---~~~------~~~l~~l~~L~~LdLs~n   97 (1037)
                      ..-+..+..+..++||+|.|...    +...+.+-.+|+..+++.-....   .++      ...+.+||+|+..|||.|
T Consensus        23 ~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN  102 (388)
T COG5238          23 VEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN  102 (388)
T ss_pred             HHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence            34456688899999999998764    44566777888888887643211   111      135677888888888888


Q ss_pred             ccCcccccc---ccccccccceecccCCCCcccCCCchh
Q 001653           98 AIENLVVPK---DFRGLRKLNTLYLGGSGIPRIDGSKVL  133 (1037)
Q Consensus        98 ~i~~~~~~~---~~~~~~~L~~L~L~~n~i~~~~~~~~~  133 (1037)
                      .+....++.   .+.....+++|.|++|++....++.+.
T Consensus       103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig  141 (388)
T COG5238         103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG  141 (388)
T ss_pred             ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHH
Confidence            776544322   345556666677777766655544443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.94  E-value=8.4e-06  Score=58.46  Aligned_cols=36  Identities=39%  Similarity=0.671  Sum_probs=22.1

Q ss_pred             CCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCC
Q 001653          860 RIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH  896 (1037)
Q Consensus       860 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~  896 (1037)
                      +|++|++++|+|+ .+|..++++++|+.||+++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4666666666666 45555666666666666666665

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.93  E-value=5.6e-07  Score=79.33  Aligned_cols=116  Identities=25%  Similarity=0.240  Sum_probs=76.9

Q ss_pred             CCCCCEEECcCCcCcccCCCCCC-cCccCeEEccCccccCcchhhhcCCCCccEEEcCCCcCCCCCchhhcCCCCCcEEe
Q 001653          657 RDSLKILDLSNNSIFGTLPSCFS-PASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLL  735 (1037)
Q Consensus       657 ~~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  735 (1037)
                      ...|+..+|++|.+....+.... ++.++.+++++|+++..+. .+..++.|+.|+++.|.+. ..|..+..+.++-+|+
T Consensus        52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPe-E~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPE-ELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD  129 (177)
T ss_pred             CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchH-HHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence            34455566666666533322222 4567777777777775444 4888888888888888887 5677777788888888


Q ss_pred             cccccccccCchhhcCCCCccEEEccCCcCcCcCCCcccc
Q 001653          736 LAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVN  775 (1037)
Q Consensus       736 L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~  775 (1037)
                      ..+|.+. .+|.++..-...-..++.++++.+..|..+..
T Consensus       130 s~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klqa  168 (177)
T KOG4579|consen  130 SPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQA  168 (177)
T ss_pred             CCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccccc
Confidence            8888877 66665544444455566777777776655443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.77  E-value=2.7e-05  Score=55.86  Aligned_cols=37  Identities=32%  Similarity=0.658  Sum_probs=32.7

Q ss_pred             cccEEEccCCcccccCCccccCcCCCCEEEcCCCcccc
Q 001653          836 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTG  873 (1037)
Q Consensus       836 ~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~  873 (1037)
                      .|+.|++++|+|+ .+|.+++++++|+.|++++|+|+.
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            6889999999999 688889999999999999999994

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.73  E-value=1.2e-05  Score=95.12  Aligned_cols=152  Identities=22%  Similarity=0.277  Sum_probs=91.0

Q ss_pred             cccceecccccccccCccchhccccccCccceecccCCCCCCCccccccccccccccEEEccCCCCCCCcchhhcCCCCC
Q 001653          215 KNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSL  294 (1037)
Q Consensus       215 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L  294 (1037)
                      .+|++|++++.+ .....|...++..+|+|++|.+.+-.+... .+.....++|+|..||+|+++++..  ..++++++|
T Consensus       122 ~nL~~LdI~G~~-~~s~~W~~kig~~LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknL  197 (699)
T KOG3665|consen  122 QNLQHLDISGSE-LFSNGWPKKIGTMLPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTNISNL--SGISRLKNL  197 (699)
T ss_pred             HhhhhcCccccc-hhhccHHHHHhhhCcccceEEecCceecch-hHHHHhhccCccceeecCCCCccCc--HHHhccccH
Confidence            467777776633 334566666777788888888877655422 2334455678888888888877753  457777888


Q ss_pred             CEEECcCCccCc-CCCccccCCCCCCEEECcCCCCCCCc------chhccCCCCCCEEEccCCcCCcccChhhhcCCCCC
Q 001653          295 QVLYASSNQLTG-NISPGLCELVLLRKLYIDNNDLRGSL------PLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSI  367 (1037)
Q Consensus       295 ~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L  367 (1037)
                      ++|.+.+-.+.. ..-..+.+|++|++||+|........      -+.-..+|+|+.||.|+..+.+.+-...+..-++|
T Consensus       198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L  277 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL  277 (699)
T ss_pred             HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence            887777665553 11124566777777777776543221      12223466777777776666554433233333444


Q ss_pred             CEE
Q 001653          368 EEL  370 (1037)
Q Consensus       368 ~~L  370 (1037)
                      +.+
T Consensus       278 ~~i  280 (699)
T KOG3665|consen  278 QQI  280 (699)
T ss_pred             hhh
Confidence            433

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.73  E-value=8.3e-05  Score=80.81  Aligned_cols=57  Identities=12%  Similarity=0.262  Sum_probs=32.1

Q ss_pred             CCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCc-----C-CCcCcccccCCCCCCeEecCCCcc
Q 001653          859 TRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL-----L-HGKIPPQLIVLNTLEVFKVAYNNL  919 (1037)
Q Consensus       859 ~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~-----l-~~~ip~~~~~l~~L~~l~ls~N~l  919 (1037)
                      ++|+.|+++++... ..|+.+.  .+|+.|+++.|.     + .+.+|+.+ .+.....+.++.+.+
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~f  218 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDVF  218 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEecccccccccCccccccccc-EechhhhcccCHHHh
Confidence            46777777777655 3444443  577777777663     1 23455555 455555555555544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.68  E-value=1.8e-05  Score=93.87  Aligned_cols=158  Identities=22%  Similarity=0.272  Sum_probs=114.5

Q ss_pred             CCCcceEeCCCCcCC-Ccchhcc-CCCCCCcEeeCCCCcCCCccCccccCCCCCCcEEECcCCccCcccccccccccccc
Q 001653           37 LTNLKFLYLNDNHFN-NSIFSSL-GGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKL  114 (1037)
Q Consensus        37 l~~L~~L~Ls~n~l~-~~~~~~l-~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~L  114 (1037)
                      -.+|++||+++...- ..-|..+ .-+++|++|.+++-.+...--...+.++++|..||+|+++++.+   .....+++|
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknL  197 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNL  197 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccH
Confidence            358999999986542 2223333 45699999999998775432234678899999999999998876   677889999


Q ss_pred             ceecccCCCCcccCCCchhhhcCCCCcccEEecccccccccc--c---hhhcccCCCCcEEEccCCcccchhhhhhhccc
Q 001653          115 NTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTV--V---NQKLHNFTNLEELILDESDLHVSQLLQSIASF  189 (1037)
Q Consensus       115 ~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~--~---~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l  189 (1037)
                      +.|.+.+-.+.+   ..-...+..+++|+.||+|........  .   .+.-..+|+|+.||.+++++...-+-..+...
T Consensus       198 q~L~mrnLe~e~---~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH  274 (699)
T KOG3665|consen  198 QVLSMRNLEFES---YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSH  274 (699)
T ss_pred             HHHhccCCCCCc---hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhC
Confidence            999888877764   233456788999999999987543221  1   12234588999999999988776666666777


Q ss_pred             ccchhhccccc
Q 001653          190 TSLKHLSMQDC  200 (1037)
Q Consensus       190 ~~L~~L~l~~~  200 (1037)
                      |+|+.+...+|
T Consensus       275 ~~L~~i~~~~~  285 (699)
T KOG3665|consen  275 PNLQQIAALDC  285 (699)
T ss_pred             ccHhhhhhhhh
Confidence            88887765554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.59  E-value=8e-05  Score=70.90  Aligned_cols=107  Identities=25%  Similarity=0.309  Sum_probs=64.7

Q ss_pred             CCcEeeCCCCcCCCccCccccCCCCCCcEEECcCCccCccccccccccccccceecccCCCCcccCCCchhhhcCCCCcc
Q 001653           63 SLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSL  142 (1037)
Q Consensus        63 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L  142 (1037)
                      ....+||++|.+. .++  .|..+++|.+|.+++|.|..+. +.....+++++.|.|.+|+|..+.+   ..-+..||+|
T Consensus        43 ~~d~iDLtdNdl~-~l~--~lp~l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~d---l~pLa~~p~L  115 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KLD--NLPHLPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSIQELGD---LDPLASCPKL  115 (233)
T ss_pred             ccceecccccchh-hcc--cCCCccccceEEecCCcceeec-cchhhhccccceEEecCcchhhhhh---cchhccCCcc
Confidence            4455666666664 222  4566666666666666666654 4445555666666666666654432   2346677778


Q ss_pred             cEEeccccccccccc--hhhcccCCCCcEEEccCCc
Q 001653          143 KTLYLSHTKFKGTVV--NQKLHNFTNLEELILDESD  176 (1037)
Q Consensus       143 ~~L~L~~n~~~~~~~--~~~l~~l~~L~~L~L~~~~  176 (1037)
                      ++|.+-+|+......  .-.+..+++|+.||++.-.
T Consensus       116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            888877776543211  2345677888888876654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.43  E-value=0.00018  Score=68.49  Aligned_cols=82  Identities=30%  Similarity=0.396  Sum_probs=39.1

Q ss_pred             CCcEEECcCCccCccccccccccccccceecccCCCCcccCCCchhhhcCCCCcccEEeccccccccccchhhcccCCCC
Q 001653           88 NLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNL  167 (1037)
Q Consensus        88 ~L~~LdLs~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L  167 (1037)
                      +...+||+.|.+...   ..+..+..|..|.++.|.|+.+++.    --..+++|++|.|.+|.+.......-+..+|.|
T Consensus        43 ~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~----L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L  115 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPD----LDTFLPNLKTLILTNNSIQELGDLDPLASCPKL  115 (233)
T ss_pred             ccceecccccchhhc---ccCCCccccceEEecCCcceeeccc----hhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence            445556666654432   3444555555555555555544321    112234555555555554433333334445555


Q ss_pred             cEEEccCCc
Q 001653          168 EELILDESD  176 (1037)
Q Consensus       168 ~~L~L~~~~  176 (1037)
                      ++|.+-+|+
T Consensus       116 ~~Ltll~Np  124 (233)
T KOG1644|consen  116 EYLTLLGNP  124 (233)
T ss_pred             ceeeecCCc
Confidence            555544444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.41  E-value=0.00047  Score=75.10  Aligned_cols=73  Identities=11%  Similarity=0.130  Sum_probs=40.9

Q ss_pred             CCCCCEEEccCccccccCcccccCCCCCcEEECcCCcCCCCCCccccCCCCCCEEeccCCccCCCCCcccCCCCCCCEEE
Q 001653          561 CFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYII  640 (1037)
Q Consensus       561 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  640 (1037)
                      +.+++.|++++|.++.. |.   -.++|+.|.+++|.-...+|+.+  .++|+.|++++|.-...+|      ++|+.|+
T Consensus        51 ~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~L~  118 (426)
T PRK15386         51 ARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRSLE  118 (426)
T ss_pred             hcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccceEE
Confidence            67788888888776643 21   12357777777654434555443  2466777777663222333      2355555


Q ss_pred             CCCCc
Q 001653          641 MPNNN  645 (1037)
Q Consensus       641 L~~n~  645 (1037)
                      +..+.
T Consensus       119 L~~n~  123 (426)
T PRK15386        119 IKGSA  123 (426)
T ss_pred             eCCCC
Confidence            55444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.34  E-value=0.00031  Score=65.46  Aligned_cols=55  Identities=22%  Similarity=0.387  Sum_probs=18.0

Q ss_pred             CCCCcEEECcCCcCCCCCCccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEc
Q 001653          512 LPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILAL  569 (1037)
Q Consensus       512 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L  569 (1037)
                      +++|+.+.+.. .+.......|.++++|+.+.+.++ +. .++...+.++.+++.+.+
T Consensus        11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~   65 (129)
T PF13306_consen   11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITF   65 (129)
T ss_dssp             -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEE
T ss_pred             CCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccc
Confidence            33444444432 233233334444444444444442 33 344444444434444444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.29  E-value=0.00042  Score=64.58  Aligned_cols=123  Identities=21%  Similarity=0.263  Sum_probs=55.2

Q ss_pred             ccccCCCCCCEEEeeccccccccchhHhhcCCCCCEEEccCccccccCcccccCCCCCcEEECcCCcCCCCCCccccCCC
Q 001653          531 SSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCY  610 (1037)
Q Consensus       531 ~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  610 (1037)
                      ..|.++++|+.+.+.. .+. .++...|.++.+|+.+.+..+ +.......|.++++++.+.+.+ .+.......|..++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence            4566777777777764 454 666666766767777777664 5555555566666666666654 33333344556666


Q ss_pred             CCCEEeccCCccCCCCCcccCCCCCCCEEECCCCcCccCCcccccCCCCC
Q 001653          611 MLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSL  660 (1037)
Q Consensus       611 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L  660 (1037)
                      +|+.+++..+ +.......|.++ .++.+.+.. .+.......|.++++|
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            6666666554 433344455555 666666654 3333444555555444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.21  E-value=0.00018  Score=71.78  Aligned_cols=86  Identities=24%  Similarity=0.470  Sum_probs=39.2

Q ss_pred             CCCcceEeCCCCcCCCcchhccCCCCCCcEeeCCCC--cCCCccCccccCCCCCCcEEECcCCccCcccccccccccccc
Q 001653           37 LTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADN--RLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKL  114 (1037)
Q Consensus        37 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n--~~~~~~~~~~l~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~L  114 (1037)
                      +..|+.|.+.+..++.  ...+-.|++||+|.++.|  ++.+.++. ...++++|++|++++|++..+.-......+.+|
T Consensus        42 ~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   42 FVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             ccchhhhhhhccceee--cccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            3444444444444443  233445555555555555  33333333 333445555555555555433222233333444


Q ss_pred             ceecccCCCCc
Q 001653          115 NTLYLGGSGIP  125 (1037)
Q Consensus       115 ~~L~L~~n~i~  125 (1037)
                      ..|++..|..+
T Consensus       119 ~~Ldl~n~~~~  129 (260)
T KOG2739|consen  119 KSLDLFNCSVT  129 (260)
T ss_pred             hhhhcccCCcc
Confidence            44444444333

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.03  E-value=5.6e-05  Score=75.18  Aligned_cols=103  Identities=28%  Similarity=0.404  Sum_probs=73.8

Q ss_pred             CCCCCcEeeCCCCcCCCccCccccCCCCCCcEEECcCCccCccccccccccccccceecccCCCCcccCCCchhhhcCCC
Q 001653           60 GLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSL  139 (1037)
Q Consensus        60 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~l  139 (1037)
                      .+.+.+.|+..+|.+. .|.  .+.+|+-|+.|.||-|.|+.+   .-+..|+.|+.|+|..|.|.++++   +..+.++
T Consensus        17 dl~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I~sldE---L~YLknl   87 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCIESLDE---LEYLKNL   87 (388)
T ss_pred             HHHHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccc---hhHHHHHHHHHHHHHhcccccHHH---HHHHhcC
Confidence            3456677788888876 343  467788888888888888776   456778888888888888876543   4567888


Q ss_pred             CcccEEeccccccccccch----hhcccCCCCcEEE
Q 001653          140 PSLKTLYLSHTKFKGTVVN----QKLHNFTNLEELI  171 (1037)
Q Consensus       140 ~~L~~L~L~~n~~~~~~~~----~~l~~l~~L~~L~  171 (1037)
                      |+|++|.|..|...+....    ..+.-+|+|++||
T Consensus        88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             chhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            8888888888876655442    3456677777664

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.97  E-value=0.00032  Score=70.14  Aligned_cols=90  Identities=26%  Similarity=0.376  Sum_probs=68.6

Q ss_pred             CccCCCCCEEeCCCCcccccccchhhHhhcCCCCcceEeCCCC--cCCCcchhccCCCCCCcEeeCCCCcCCCccCcccc
Q 001653            6 FTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDN--HFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGL   83 (1037)
Q Consensus         6 f~~l~~L~~L~L~~~~i~~~~~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l   83 (1037)
                      +..+..|+.|++.+..++      ....+..+++|++|.+|.|  .+.+.++.....+++|++|++++|+++..-....+
T Consensus        39 ~d~~~~le~ls~~n~glt------t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl  112 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLT------TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL  112 (260)
T ss_pred             cccccchhhhhhhcccee------ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence            345666777777766665      2345778999999999999  66666676677789999999999999732223457


Q ss_pred             CCCCCCcEEECcCCccCc
Q 001653           84 NSLSNLEELDMTGNAIEN  101 (1037)
Q Consensus        84 ~~l~~L~~LdLs~n~i~~  101 (1037)
                      .++.+|..||+.+|....
T Consensus       113 ~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVTN  130 (260)
T ss_pred             hhhcchhhhhcccCCccc
Confidence            888999999999997654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.91  E-value=0.00032  Score=82.61  Aligned_cols=133  Identities=26%  Similarity=0.243  Sum_probs=65.3

Q ss_pred             CCCCCcEeeCCCCcCCCccC-ccccCCCCCCcEEECcCC-ccCcc---ccccccccccccceecccCCC-CcccCCCchh
Q 001653           60 GLSSLRHLSLADNRLNGSID-IKGLNSLSNLEELDMTGN-AIENL---VVPKDFRGLRKLNTLYLGGSG-IPRIDGSKVL  133 (1037)
Q Consensus        60 ~l~~L~~L~Ls~n~~~~~~~-~~~l~~l~~L~~LdLs~n-~i~~~---~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~  133 (1037)
                      .++.|+.|.+..+.-..... ......+++|++|+++++ .....   ........++.++.|+++++. ++    ....
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is----d~~l  261 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT----DIGL  261 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC----chhH
Confidence            35666777666664332211 124456677777777652 11111   012233444566666666665 33    2222


Q ss_pred             hhcC-CCCcccEEeccccc-cccccchhhcccCCCCcEEEccCCccc-chhhhhhhcccccchhhc
Q 001653          134 QSIG-SLPSLKTLYLSHTK-FKGTVVNQKLHNFTNLEELILDESDLH-VSQLLQSIASFTSLKHLS  196 (1037)
Q Consensus       134 ~~l~-~l~~L~~L~L~~n~-~~~~~~~~~l~~l~~L~~L~L~~~~~~-~~~~~~~l~~l~~L~~L~  196 (1037)
                      ..++ .+++|++|.+.+|. +++........+++.|++|+++++... ...+......+++++.|.
T Consensus       262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~  327 (482)
T KOG1947|consen  262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK  327 (482)
T ss_pred             HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence            2222 26666766666665 455544455556666666666666443 222222333344444443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.70  E-value=0.00029  Score=83.03  Aligned_cols=16  Identities=31%  Similarity=0.225  Sum_probs=8.3

Q ss_pred             hhcCCCCcccEEeccc
Q 001653          134 QSIGSLPSLKTLYLSH  149 (1037)
Q Consensus       134 ~~l~~l~~L~~L~L~~  149 (1037)
                      .....+++|++|++++
T Consensus       208 ~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  208 ALALKCPNLEELDLSG  223 (482)
T ss_pred             HHHhhCchhheecccC
Confidence            3444555555555554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.38  E-value=9e-05  Score=84.11  Aligned_cols=191  Identities=24%  Similarity=0.264  Sum_probs=127.4

Q ss_pred             CCEEeCCCCcccccccchhhHhhcCCCCcceEeCCCCcCCCc----chhccCCC-CCCcEeeCCCCcCCCc----cCccc
Q 001653           12 LESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNS----IFSSLGGL-SSLRHLSLADNRLNGS----IDIKG   82 (1037)
Q Consensus        12 L~~L~L~~~~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l-~~L~~L~Ls~n~~~~~----~~~~~   82 (1037)
                      ++.|.|.+|.+..........++....+|..|++++|.+.+.    +-..+... ..|++|++..|.+++.    +. +.
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~-~~  167 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLA-AV  167 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHH-HH
Confidence            677888888887776666777778888888888888887643    33344444 6677888888877644    22 35


Q ss_pred             cCCCCCCcEEECcCCccCccc---cccc----cccccccceecccCCCCcccCCCchhhhcCCCCc-ccEEecccccccc
Q 001653           83 LNSLSNLEELDMTGNAIENLV---VPKD----FRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPS-LKTLYLSHTKFKG  154 (1037)
Q Consensus        83 l~~l~~L~~LdLs~n~i~~~~---~~~~----~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~-L~~L~L~~n~~~~  154 (1037)
                      +.....++.+|++.|.+....   .+..    +.....++.|++++|.++......+-..+...++ ++.|++..|.+.+
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            666778888888888764221   1122    2346777888888888875554445555666666 7778888887754


Q ss_pred             ccch---hhcccC-CCCcEEEccCCcccchh---hhhhhcccccchhhcccccccc
Q 001653          155 TVVN---QKLHNF-TNLEELILDESDLHVSQ---LLQSIASFTSLKHLSMQDCVLK  203 (1037)
Q Consensus       155 ~~~~---~~l~~l-~~L~~L~L~~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~  203 (1037)
                      ....   ..+... ..++.++++.|.+...+   +.+.+..++.++.+.+..+...
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            3221   233344 56688888888776543   5666677778888888777554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.31  E-value=0.00024  Score=70.88  Aligned_cols=85  Identities=24%  Similarity=0.321  Sum_probs=53.9

Q ss_pred             CCCCCcEEECcCCccCccccccccccccccceecccCCCCcccCCCchhhhcCCCCcccEEeccccccccccchhhcccC
Q 001653           85 SLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNF  164 (1037)
Q Consensus        85 ~l~~L~~LdLs~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l  164 (1037)
                      .+.+.+.|+.-++.++++   .....++.|+.|.|+-|.|+++.      .+..|++|++|+|..|.+.+.....-+.++
T Consensus        17 dl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~------pl~rCtrLkElYLRkN~I~sldEL~YLknl   87 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLA------PLQRCTRLKELYLRKNCIESLDELEYLKNL   87 (388)
T ss_pred             HHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccch------hHHHHHHHHHHHHHhcccccHHHHHHHhcC
Confidence            345666677777777665   45566677777777777766443      356677777777777766554444556666


Q ss_pred             CCCcEEEccCCccc
Q 001653          165 TNLEELILDESDLH  178 (1037)
Q Consensus       165 ~~L~~L~L~~~~~~  178 (1037)
                      ++|+.|.|..|.+.
T Consensus        88 psLr~LWL~ENPCc  101 (388)
T KOG2123|consen   88 PSLRTLWLDENPCC  101 (388)
T ss_pred             chhhhHhhccCCcc
Confidence            66666666666543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.00  E-value=0.00034  Score=79.52  Aligned_cols=188  Identities=21%  Similarity=0.261  Sum_probs=113.7

Q ss_pred             cceEeCCCCcCCCc----chhccCCCCCCcEeeCCCCcCCCccCc----cccCCC-CCCcEEECcCCccCcccc---ccc
Q 001653           40 LKFLYLNDNHFNNS----IFSSLGGLSSLRHLSLADNRLNGSIDI----KGLNSL-SNLEELDMTGNAIENLVV---PKD  107 (1037)
Q Consensus        40 L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~~~~~~~~----~~l~~l-~~L~~LdLs~n~i~~~~~---~~~  107 (1037)
                      +..|.|.+|.+.+.    +...+.....|+.|++++|.+.+. ..    +.+... ..|++|++..|.+.+..-   ...
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~-g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDE-GARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccH-hHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            77788888877653    445667778888888888887632 11    123333 456777777777665422   223


Q ss_pred             cccccccceecccCCCCcccCCCchhhhcC----CCCcccEEeccccccccccc---hhhcccCCC-CcEEEccCCcccc
Q 001653          108 FRGLRKLNTLYLGGSGIPRIDGSKVLQSIG----SLPSLKTLYLSHTKFKGTVV---NQKLHNFTN-LEELILDESDLHV  179 (1037)
Q Consensus       108 ~~~~~~L~~L~L~~n~i~~~~~~~~~~~l~----~l~~L~~L~L~~n~~~~~~~---~~~l~~l~~-L~~L~L~~~~~~~  179 (1037)
                      +.....++.++++.|.+...........+.    ...++++|.+.+|.++....   ...+...+. +.++++..|...+
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            344666777788888775443333334444    46778888888887653322   234455555 6667787777665


Q ss_pred             hh---hhhhhccc-ccchhhcccccccccccC---ccccccccccceecccccccc
Q 001653          180 SQ---LLQSIASF-TSLKHLSMQDCVLKGALH---GQDFLKFKNLEYLDMGWVQVD  228 (1037)
Q Consensus       180 ~~---~~~~l~~l-~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~  228 (1037)
                      ..   ....+... +.+++++++.|.+...-.   ...+..++.++.+.++.+++.
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            43   23333444 566788888886654322   123455667888888766543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.82  E-value=0.0039  Score=37.00  Aligned_cols=19  Identities=58%  Similarity=0.901  Sum_probs=8.8

Q ss_pred             CCEEEcCCCccccchhhhhh
Q 001653          861 IHALNLSHNNLTGTIPTTFS  880 (1037)
Q Consensus       861 L~~L~Ls~N~l~~~ip~~~~  880 (1037)
                      |++|||++|+|+ .+|++|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            444555555554 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.56  E-value=0.004  Score=36.96  Aligned_cols=21  Identities=43%  Similarity=0.491  Sum_probs=14.6

Q ss_pred             cCCeEeCCCCcCCCcCcccccC
Q 001653          884 QIESLDLSYNLLHGKIPPQLIV  905 (1037)
Q Consensus       884 ~L~~LdLs~N~l~~~ip~~~~~  905 (1037)
                      +|++||||+|+|+ .+|++|.+
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4677788888777 66666544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.28  E-value=0.01  Score=57.96  Aligned_cols=88  Identities=16%  Similarity=0.096  Sum_probs=66.4

Q ss_pred             CCccCCCCCEEeCCCCcccccccchhhHhhcCCCCcceEeCCCCcCCCcchhccCCCCCCcEeeCCCCcCCCccCccccC
Q 001653            5 LFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLN   84 (1037)
Q Consensus         5 ~f~~l~~L~~L~L~~~~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~   84 (1037)
                      -+..++..++||++.|++..     .-..++.++.|..||++.|++. ..|..++....++++++..|..+ ..|. .++
T Consensus        37 ei~~~kr~tvld~~s~r~vn-----~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~~  108 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVN-----LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK-SQK  108 (326)
T ss_pred             hhhccceeeeehhhhhHHHh-----hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc-ccc
Confidence            35577788888888887752     2234667778888888888776 56788888888888888888775 6776 788


Q ss_pred             CCCCCcEEECcCCccC
Q 001653           85 SLSNLEELDMTGNAIE  100 (1037)
Q Consensus        85 ~l~~L~~LdLs~n~i~  100 (1037)
                      +.++++++++..+.+.
T Consensus       109 k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  109 KEPHPKKNEQKKTEFF  124 (326)
T ss_pred             ccCCcchhhhccCcch
Confidence            8888888888887643

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.87  E-value=0.017  Score=56.51  Aligned_cols=82  Identities=18%  Similarity=0.203  Sum_probs=70.8

Q ss_pred             cccEEEccCCcccccCCccccCcCCCCEEEcCCCccccchhhhhhcCccCCeEeCCCCcCCCcCcccccCCCCCCeEecC
Q 001653          836 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVA  915 (1037)
Q Consensus       836 ~l~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~LdLs~N~l~~~ip~~~~~l~~L~~l~ls  915 (1037)
                      ..+.||++.|++. ..-..|.-++.+..||+|.|++. ..|..++.+..+..+++..|..+ ..|.++...+.++++++-
T Consensus        43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence            5678999999987 55666777888999999999998 78899999999999999999887 678899999999999999


Q ss_pred             CCcce
Q 001653          916 YNNLS  920 (1037)
Q Consensus       916 ~N~l~  920 (1037)
                      .|.+.
T Consensus       120 ~~~~~  124 (326)
T KOG0473|consen  120 KTEFF  124 (326)
T ss_pred             cCcch
Confidence            88764

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.73  E-value=0.33  Score=30.09  Aligned_cols=15  Identities=40%  Similarity=0.521  Sum_probs=8.1

Q ss_pred             ccCCeEeCCCCcCCC
Q 001653          883 KQIESLDLSYNLLHG  897 (1037)
Q Consensus       883 ~~L~~LdLs~N~l~~  897 (1037)
                      ++|++|+|++|+|+.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00369        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            445555555555553

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.73  E-value=0.33  Score=30.09  Aligned_cols=15  Identities=40%  Similarity=0.521  Sum_probs=8.1

Q ss_pred             ccCCeEeCCCCcCCC
Q 001653          883 KQIESLDLSYNLLHG  897 (1037)
Q Consensus       883 ~~L~~LdLs~N~l~~  897 (1037)
                      ++|++|+|++|+|+.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00370        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            445555555555553

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=87.90  E-value=0.33  Score=29.45  Aligned_cols=22  Identities=23%  Similarity=0.434  Sum_probs=11.7

Q ss_pred             CCCCEEEcCCCccccchhhhhh
Q 001653          859 TRIHALNLSHNNLTGTIPTTFS  880 (1037)
Q Consensus       859 ~~L~~L~Ls~N~l~~~ip~~~~  880 (1037)
                      ++|+.|+|++|.|++..+..++
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHhC
Confidence            4566666666666655555443

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=87.85  E-value=0.37  Score=26.43  Aligned_cols=13  Identities=62%  Similarity=0.802  Sum_probs=4.5

Q ss_pred             CCCEEEeeccccc
Q 001653          538 MLERLDISNNQLT  550 (1037)
Q Consensus       538 ~L~~L~L~~n~l~  550 (1037)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.59  E-value=0.47  Score=29.42  Aligned_cols=22  Identities=36%  Similarity=0.637  Sum_probs=14.5

Q ss_pred             cCCCCEEEcCCCccccchhhhh
Q 001653          858 LTRIHALNLSHNNLTGTIPTTF  879 (1037)
Q Consensus       858 l~~L~~L~Ls~N~l~~~ip~~~  879 (1037)
                      +++|+.|+|++|+|+...+..|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            3567778888888875444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.59  E-value=0.47  Score=29.42  Aligned_cols=22  Identities=36%  Similarity=0.637  Sum_probs=14.5

Q ss_pred             cCCCCEEEcCCCccccchhhhh
Q 001653          858 LTRIHALNLSHNNLTGTIPTTF  879 (1037)
Q Consensus       858 l~~L~~L~Ls~N~l~~~ip~~~  879 (1037)
                      +++|+.|+|++|+|+...+..|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            3567778888888875444444

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.34  E-value=0.28  Score=47.54  Aligned_cols=34  Identities=29%  Similarity=0.297  Sum_probs=14.7

Q ss_pred             ccchhhcccccccccccCccccccccccceeccc
Q 001653          190 TSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMG  223 (1037)
Q Consensus       190 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  223 (1037)
                      ++|+.|+++.|...+......+..+++|+.|.+.
T Consensus       151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~  184 (221)
T KOG3864|consen  151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY  184 (221)
T ss_pred             cchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence            3444444444433333333334444444444443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.37  E-value=0.24  Score=48.07  Aligned_cols=87  Identities=21%  Similarity=0.217  Sum_probs=62.4

Q ss_pred             ccccceecccCCCCcccCCCchhhhcCCCCcccEEeccccccccccchhhcc-cCCCCcEEEccCCcccchhhhhhhccc
Q 001653          111 LRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLH-NFTNLEELILDESDLHVSQLLQSIASF  189 (1037)
Q Consensus       111 ~~~L~~L~L~~n~i~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~-~l~~L~~L~L~~~~~~~~~~~~~l~~l  189 (1037)
                      -...+.++-+++.|.    ..-.+.+..++.++.|.+.+|.--+....+.++ -.++|+.|++++|.-..+.....+..+
T Consensus       100 ~~~IeaVDAsds~I~----~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l  175 (221)
T KOG3864|consen  100 NVKIEAVDASDSSIM----YEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL  175 (221)
T ss_pred             cceEEEEecCCchHH----HHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHh
Confidence            344566677777776    455678888999999999888643332222333 357899999998876666777888889


Q ss_pred             ccchhhcccccc
Q 001653          190 TSLKHLSMQDCV  201 (1037)
Q Consensus       190 ~~L~~L~l~~~~  201 (1037)
                      ++|+.|.+.+-.
T Consensus       176 knLr~L~l~~l~  187 (221)
T KOG3864|consen  176 KNLRRLHLYDLP  187 (221)
T ss_pred             hhhHHHHhcCch
Confidence            999998887643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1037
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-48
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		7e-48
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-16
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		3e-07
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		4e-04
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		3e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		3e-05
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		3e-05
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		3e-05
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		3e-05
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		1e-04
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		1e-04
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		2e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		2e-04
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		2e-04
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		3e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  189 bits (480), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 160/514 (31%), Positives = 233/514 (45%), Gaps = 77/514 (14%)
Query: 482 MPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFA------- 534
           +P+ S Q L+  +   N F G IP  +      L  L+LS N F G++P  F        
Sbjct: 263 LPLKSLQYLSLAE---NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 319
Query: 535 ------------------DMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQG 576
                              M+ L+ LD+S N+ +GE+PE +     SL  L LS+N   G
Sbjct: 320 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 379
Query: 577 HIFSE--KFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLP 634
            I     +     L  L L  N F G+IP +LS C  L  L+LS N+L G IP  LG+L 
Sbjct: 380 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 439
Query: 635 TLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIE 694
            L+ + +  N LEG IP E     +L+ L L  N + G +PS  S  +            
Sbjct: 440 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT------------ 487
Query: 695 GRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKE 754
                      +L  + LS N L G IP  I RL  L  L L++N   G IP +L   + 
Sbjct: 488 -----------NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 536
Query: 755 VRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPP--- 811
           +  +DL+ N  +G IP  +   S      G++A   I  +R    ++  +  +       
Sbjct: 537 LIWLDLNTNLFNGTIPAAMFKQS------GKIAANFIAGKRYVYIKNDGMKKECHGAGNL 590
Query: 812 -----MGKEETVQFTTKN----MSYYYQGRILT------SMSGIDLSCNKLTGEIPTQIG 856
                +  E+  + +T+N     S  Y G          SM  +D+S N L+G IP +IG
Sbjct: 591 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 650
Query: 857 YLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAY 916
            +  +  LNL HN+++G+IP    +L+ +  LDLS N L G+IP  +  L  L    ++ 
Sbjct: 651 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 710
Query: 917 NNLSGKIPDRAQFSTFEEDSYEGNPFLCGQPLSK 950
           NNLSG IP+  QF TF    +  NP LCG PL +
Sbjct: 711 NNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  189 bits (480), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 160/514 (31%), Positives = 233/514 (45%), Gaps = 77/514 (14%)
Query: 482 MPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFA------- 534
           +P+ S Q L+  +   N F G IP  +      L  L+LS N F G++P  F        
Sbjct: 266 LPLKSLQYLSLAE---NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322
Query: 535 ------------------DMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQG 576
                              M+ L+ LD+S N+ +GE+PE +     SL  L LS+N   G
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382
Query: 577 HIFSE--KFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLP 634
            I     +     L  L L  N F G+IP +LS C  L  L+LS N+L G IP  LG+L 
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442
Query: 635 TLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIE 694
            L+ + +  N LEG IP E     +L+ L L  N + G +PS  S  +            
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT------------ 490
Query: 695 GRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKE 754
                      +L  + LS N L G IP  I RL  L  L L++N   G IP +L   + 
Sbjct: 491 -----------NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539
Query: 755 VRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPP--- 811
           +  +DL+ N  +G IP  +   S      G++A   I  +R    ++  +  +       
Sbjct: 540 LIWLDLNTNLFNGTIPAAMFKQS------GKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593
Query: 812 -----MGKEETVQFTTKN----MSYYYQGRILT------SMSGIDLSCNKLTGEIPTQIG 856
                +  E+  + +T+N     S  Y G          SM  +D+S N L+G IP +IG
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653
Query: 857 YLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAY 916
            +  +  LNL HN+++G+IP    +L+ +  LDLS N L G+IP  +  L  L    ++ 
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713
Query: 917 NNLSGKIPDRAQFSTFEEDSYEGNPFLCGQPLSK 950
           NNLSG IP+  QF TF    +  NP LCG PL +
Sbjct: 714 NNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 109/243 (44%), Gaps = 29/243 (11%)
Query: 715 NSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIP---- 770
           N+L G IP  I +L QL+YL + H  + G IP  L Q+K +  +D S+N LSG +P    
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 771 --PCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYY 828
             P LV  + +        P S +   + ++ S  +   S   +  +    F   N+++ 
Sbjct: 147 SLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTI---SRNRLTGKIPPTFANLNLAF- 201
Query: 829 YQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLT---GTIPTTFSNLKQI 885
                      +DLS N L G+     G       ++L+ N+L    G +  +    K +
Sbjct: 202 -----------VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS----KNL 246
Query: 886 ESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCG 945
             LDL  N ++G +P  L  L  L    V++NNL G+IP       F+  +Y  N  LCG
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306
Query: 946 QPL 948
            PL
Sbjct: 307 SPL 309

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 2/147 (1%)
Query: 266 QLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDN 325
           +L  L+ LY+ DN L+         + +L+ L+ + N+L         +LV L +L +D 
Sbjct: 59  RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118
Query: 326 NDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPI-SL 384
           N L+   P    +LT L  L + YN+L +++       LTS++EL L NN   ++P  + 
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177
Query: 385 EPLFNLSKLQTFNGEINAQTESHYDSL 411
           + L  L  L+  N ++    E  +DSL
Sbjct: 178 DKLTELKTLKLDNNQLKRVPEGAFDSL 204

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 62/130 (47%), Gaps = 7/130 (5%)
Query: 488 QKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNN 547
           + L TL V +N  Q  +P+ +   L  L EL L RN      P  F  +  L  L +  N
Sbjct: 85  KNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 548 QLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPE--- 604
           +L   +P+ +     SL+ L L NN+L+         LT L TL+LD NN +  +PE   
Sbjct: 144 ELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD-NNQLKRVPEGAF 201
Query: 605 -SLSKCYMLR 613
            SL K  ML+
Sbjct: 202 DSLEKLKMLQ 211

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 77/136 (56%), Gaps = 13/136 (9%)
Query: 264 LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYI 323
           L  L +L GL + +N + D  P  L N+T+L  L  SSN ++ +IS  L  L  L++L  
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSF 158
Query: 324 DNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQI-PI 382
            +N +    PL  ANLT+L  LD+S N++++    S L  LT++E LI +NN    I P+
Sbjct: 159 SSNQVTDLKPL--ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPL 213
Query: 383 SLEPLFNLSKLQTFNG 398
            +  L NL +L + NG
Sbjct: 214 GI--LTNLDEL-SLNG 226

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 77/136 (56%), Gaps = 13/136 (9%)
Query: 264 LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYI 323
           L  L +L GL + +N + D  P  L N+T+L  L  SSN ++ +IS  L  L  L++L  
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSF 158
Query: 324 DNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQI-PI 382
            +N +    PL  ANLT+L  LD+S N++++    S L  LT++E LI +NN    I P+
Sbjct: 159 SSNQVTDLKPL--ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPL 213
Query: 383 SLEPLFNLSKLQTFNG 398
            +  L NL +L + NG
Sbjct: 214 GI--LTNLDEL-SLNG 226

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 77/136 (56%), Gaps = 13/136 (9%)
Query: 264 LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYI 323
           L  L +L GL + +N + D  P  L N+T+L  L  SSN ++ +IS  L  L  L++L  
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNF 158
Query: 324 DNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQI-PI 382
            +N +    PL  ANLT+L  LD+S N++++    S L  LT++E LI +NN    I P+
Sbjct: 159 SSNQVTDLKPL--ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPL 213
Query: 383 SLEPLFNLSKLQTFNG 398
            +  L NL +L + NG
Sbjct: 214 GI--LTNLDEL-SLNG 226

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 512 LPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSN 571
           L  L  L L  NA       +F D+  L  L +  N+++  +PER   G  SL+ L L  
Sbjct: 127 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQ 185
Query: 572 NRLQGHIFSEKF-NLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDN 620
           NR+  H+    F +L  LMTL L  NN      E+L+    L+ L L+DN
Sbjct: 186 NRV-AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 512 LPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSN 571
           L  L  L L  NA       +F D+  L  L +  N+++  +PER   G  SL+ L L  
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQ 186
Query: 572 NRLQGHIFSEKF-NLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDN 620
           NR+  H+    F +L  LMTL L  NN      E+L+    L+ L L+DN
Sbjct: 187 NRV-AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 77/138 (55%), Gaps = 18/138 (13%)
Query: 264 LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYI 323
           L  L +L GL + +N + D  P  L N+T+L  L  SSN ++ +IS  L  L  L++L  
Sbjct: 107 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSF 162
Query: 324 DN--NDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQI- 380
            N   DL+      LANLT+L  LD+S N++++    S L  LT++E LI +NN    I 
Sbjct: 163 GNQVTDLK-----PLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDIT 214
Query: 381 PISLEPLFNLSKLQTFNG 398
           P+ +  L NL +L + NG
Sbjct: 215 PLGI--LTNLDEL-SLNG 229

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 77/138 (55%), Gaps = 18/138 (13%)
Query: 264 LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYI 323
           L  L +L GL + +N + D  P  L N+T+L  L  SSN ++ +IS  L  L  L++L  
Sbjct: 108 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSF 163
Query: 324 DN--NDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQI- 380
            N   DL+      LANLT+L  LD+S N++++    S L  LT++E LI +NN    I 
Sbjct: 164 GNQVTDLK-----PLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDIT 215
Query: 381 PISLEPLFNLSKLQTFNG 398
           P+ +  L NL +L + NG
Sbjct: 216 PLGI--LTNLDEL-SLNG 230

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 77/138 (55%), Gaps = 18/138 (13%)
Query: 264 LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYI 323
           L  L +L GL + +N + D  P  L N+T+L  L  SSN ++ +IS  L  L  L++L  
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNF 158
Query: 324 DN--NDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQI- 380
            N   DL+      LANLT+L  LD+S N++++    S L  LT++E LI +NN    I 
Sbjct: 159 GNQVTDLK-----PLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDIT 210
Query: 381 PISLEPLFNLSKLQTFNG 398
           P+ +  L NL +L + NG
Sbjct: 211 PLGI--LTNLDEL-SLNG 225

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 77/138 (55%), Gaps = 18/138 (13%)
Query: 264 LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYI 323
           L  L +L GL + +N + D  P  L N+T+L  L  SSN ++ +IS  L  L  L++L  
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNF 158
Query: 324 DN--NDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQI- 380
            N   DL+      LANLT+L  LD+S N++++    S L  LT++E LI +NN    I 
Sbjct: 159 GNQVTDLK-----PLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDIT 210
Query: 381 PISLEPLFNLSKLQTFNG 398
           P+ +  L NL +L + NG
Sbjct: 211 PLGI--LTNLDEL-SLNG 225

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 106/282 (37%), Gaps = 53/282 (18%)
Query: 652 IEFCQRDSLKILDLSNNSIFGTLPSCF----------------------------SPASI 683
           +EF    SL+ LDLS+N +    P CF                            S  SI
Sbjct: 165 LEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSI 224
Query: 684 EQVHLSKNKIEGRLESIIH--DNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYI 741
           + + L+ N++    ES        +L  LDLSYN+LH         LP L YL L +N I
Sbjct: 225 QNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNI 284
Query: 742 KGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSI-WCRRASVYR 800
           +   P     L  +R + L                S++   H  +   S  W +    Y 
Sbjct: 285 QRLSPRSFYGLSNLRYLSLKR---------AFTKQSVSLASHPNIDDFSFQWLK----YL 331
Query: 801 SACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTR 860
                  ++ P  K  T    T  +S  Y      S+S    S   LT E    + + + 
Sbjct: 332 EYLNMDDNNIPSTKSNTF---TGLVSLKY-----LSLSKTFTSLQTLTNETFVSLAH-SP 382
Query: 861 IHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQ 902
           +  LNL+ N+++     TFS L Q+  LDL  N +  K+  Q
Sbjct: 383 LLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQ 424

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 30/172 (17%)
Query: 583 FNLTNLMTLQLDGNNFIGEIPESLSKCYM-------LRGLYLSDNHLFGKIPRWLGNLPT 635
           F  T++ TL L GN F     ES++K +        ++ L LS+++  G           
Sbjct: 209 FKNTSITTLDLSGNGF----KESMAKRFFDAIAGTKIQSLILSNSYNMGSS--------- 255
Query: 636 LQYIIMPNNNLEGPIPIEF--CQRDSLKILDLSNNSIFGTLPSCFSP-ASIEQVHLSKNK 692
                  + N + P    F   +   +K  DLS + IF  L S FS    +EQ+ L++N+
Sbjct: 256 -----FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310
Query: 693 IEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRI-DRLPQLNYLLLAHNYIKG 743
           I    ++      HL+ L+LS N L GSI +R+ + L +L  L L++N+I+ 
Sbjct: 311 INKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRA 361

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1037
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-161
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-122
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-113
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-83
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-77
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-75
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-73
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-54
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-43
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-69
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-67
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-66
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-48
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-46
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-37
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-66
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-66
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-59
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-43
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-36
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-64
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-60
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-54
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-41
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-60
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-59
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-51
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-45
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-58
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-57
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-51
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-50
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-50
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-21
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-56
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-56
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-55
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-53
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-40
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-52
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-47
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-40
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-47
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-47
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-40
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-40
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-30
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-31
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-34
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-32
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-30
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-30
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-28
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-27
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-21
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-14
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-13
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-12
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-11
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-11
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-10
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-09
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  494 bits (1273), Expect = e-161
 Identities = 210/734 (28%), Positives = 318/734 (43%), Gaps = 72/734 (9%)

Query: 240 SMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPW--CLANMTSLQVL 297
           S+  L  L L+NS +N  ++   G      L  L +  N L   +     L + + L+ L
Sbjct: 75  SLTGLESLFLSNSHIN-GSV--SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFL 131

Query: 298 YASSNQLTGNIS-PGLCELVLLRKLYIDNNDLRGSLPLCLA---NLTSLRVLDVSYNQLT 353
             SSN L       G  +L  L  L +  N + G+  +          L+ L +S N+++
Sbjct: 132 NVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS 191

Query: 354 ENISSSSLMHLTSIEELILSNNHFF-QIPISLEPLFNLSKLQTFNGEINAQTESHYDSLT 412
            ++  S      ++E L +S+N+F   IP     L + S LQ  +               
Sbjct: 192 GDVDVS---RCVNLEFLDVSSNNFSTGIPF----LGDCSALQHLD--------------- 229

Query: 413 PKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLA 472
               ++   LSG      F   +    +L  +N+S     G  P   L    +L+ L LA
Sbjct: 230 ----ISGNKLSG-----DFSRAISTCTELKLLNISSNQFVGPIPPLPL---KSLQYLSLA 277

Query: 473 NNSLFGSFRMPI-HSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIP- 530
            N   G     +  +   L  LD+  N F G +P   G+    L  L LS N F+G +P 
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS-CSLLESLALSSNNFSGELPM 336

Query: 531 SSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSE--KFNLTNL 588
            +   M+ L+ LD+S N+ +GE+PE +     SL  L LS+N   G I     +     L
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396

Query: 589 MTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEG 648
             L L  N F G+IP +LS C  L  L+LS N+L G IP  LG+L  L+ + +  N LEG
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456

Query: 649 PIPIEFCQRDSLKILDLSNNSIFGTLPSCFSP-ASIEQVHLSKNKIEGRLESIIHDNPHL 707
            IP E     +L+ L L  N + G +PS  S   ++  + LS N++ G +   I    +L
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516

Query: 708 VTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSG 767
             L LS NS  G+IP  +     L +L L  N   G IP  + +        ++ N ++G
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAG 572

Query: 768 RIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSY 827
           +    + N  + +  HG                     G  S  + +  T          
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLE-------------FQGIRSEQLNRLSTRNPCNITSRV 619

Query: 828 Y-----YQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNL 882
           Y            SM  +D+S N L+G IP +IG +  +  LNL HN+++G+IP    +L
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679

Query: 883 KQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPF 942
           + +  LDLS N L G+IP  +  L  L    ++ NNLSG IP+  QF TF    +  NP 
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPG 739

Query: 943 LCGQPLSKSCNDNG 956
           LCG PL +    N 
Sbjct: 740 LCGYPLPRCDPSNA 753

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  391 bits (1008), Expect = e-122
 Identities = 183/743 (24%), Positives = 277/743 (37%), Gaps = 148/743 (19%)

Query: 35  SRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDM 94
            ++T++       N   +++ SSL  L+ L  L L+++ +NGS+   G    ++L  LD+
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS--GFKCSASLTSLDL 107

Query: 95  TGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKG 154
           + N                     L G  +        L S+GS   LK L +S      
Sbjct: 108 SRN--------------------SLSGP-VT------TLTSLGSCSGLKFLNVSSNTLDF 140

Query: 155 TVVNQKLHNFTNLEELILDESDLH--VSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFL 212
                      +LE L L  + +                LKHL++    + G +   D  
Sbjct: 141 PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV---DVS 197

Query: 213 KFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQG 272
           +  NLE+LD                                                   
Sbjct: 198 RCVNLEFLD--------------------------------------------------- 206

Query: 273 LYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSL 332
             +  N+   G+P+ L + ++LQ L  S N+L+G+ S  +     L+ L I +N   G +
Sbjct: 207 --VSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263

Query: 333 PLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSK 392
           P     L SL+ L ++ N+ T  I         ++  L LS NHF+              
Sbjct: 264 P--PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY-------------- 307

Query: 393 LQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLS 452
                                               G  P F      L S+ LS  N S
Sbjct: 308 ------------------------------------GAVPPFFGSCSLLESLALSSNNFS 331

Query: 453 GEFPNWLLENNTNLETLLLANNSLFGSFRMPIHS-HQKLATLDVFNNFFQGHIPVEIG-T 510
           GE P   L     L+ L L+ N   G     + +    L TLD+ +N F G I   +   
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391

Query: 511 YLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALS 570
               L EL L  N F G IP + ++   L  L +S N L+G IP  + +    L  L L 
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLW 450

Query: 571 NNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWL 630
            N L+G I  E   +  L TL LD N+  GEIP  LS C  L  + LS+N L G+IP+W+
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510

Query: 631 GNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSK 690
           G L  L  + + NN+  G IP E     SL  LDL+ N   GT+P+     S +   ++ 
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK---IAA 567

Query: 691 NKIEGRLESIIHDNPHLVTLDLSYN--SLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQ 748
           N I G+    I ++        + N     G    +++RL   N   +      G     
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627

Query: 749 LCQLKEVRLIDLSHNNLSGRIPP 771
                 +  +D+S+N LSG IP 
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPK 650

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  368 bits (947), Expect = e-113
 Identities = 192/777 (24%), Positives = 305/777 (39%), Gaps = 136/777 (17%)

Query: 4   SLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSI--FSSLGGL 61
           S       LESL LS ++I G     S+       +L  L L+ N  +  +   +SLG  
Sbjct: 71  SSLLSLTGLESLFLSNSHING-----SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC 125

Query: 62  SSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGG 121
           S L+ L+++ N L+    + G   L++LE LD++ N                     + G
Sbjct: 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN--------------------SISG 165

Query: 122 SGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQ 181
           +                   LK L +S  K  G V    +    NLE L +  ++     
Sbjct: 166 A-NVV-----GWVLSDGCGELKHLAISGNKISGDV---DVSRCVNLEFLDVSSNNFSTG- 215

Query: 182 LLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFL--QIVGE 239
            +  +   ++L+HL +    L G    +       L+ L++         N     I   
Sbjct: 216 -IPFLGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISS-------NQFVGPIPPL 266

Query: 240 SMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYA 299
            + SL +LSL  +      I D        L GL +  N     +P    + + L+ L  
Sbjct: 267 PLKSLQYLSLAENKFT-GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325

Query: 300 SSNQLTGNISPG-LCELVLLRKLYIDNNDLRGSLPLCLANLT-SLRVLDVSYNQLTENIS 357
           SSN  +G +    L ++  L+ L +  N+  G LP  L NL+ SL  LD+S N  +  I 
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385

Query: 358 SS-SLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQ 416
            +       +++EL L NN F                                       
Sbjct: 386 PNLCQNPKNTLQELYLQNNGF--------------------------------------- 406

Query: 417 LTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSL 476
                       G  P  L +  +L S++LS   LSG  P+ L  + + L  L L  N  
Sbjct: 407 -----------TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNM- 453

Query: 477 FGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADM 536
                                   +G IP E+  Y+  L  L L  N   G IPS  ++ 
Sbjct: 454 -----------------------LEGEIPQELM-YVKTLETLILDFNDLTGEIPSGLSNC 489

Query: 537 KMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGN 596
             L  + +SNN+LTGEIP+ +     +L IL LSNN   G+I +E  +  +L+ L L+ N
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548

Query: 597 NFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNN--NLEGPIPIEF 654
            F G IP ++ K        ++ N + GK   ++ N    +      N    +G    + 
Sbjct: 549 LFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604

Query: 655 CQRDSLKILDLSNNSIFGTLPSCFSP-ASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLS 713
            +  +    ++++    G     F    S+  + +S N + G +   I   P+L  L+L 
Sbjct: 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664

Query: 714 YNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIP 770
           +N + GSIP+ +  L  LN L L+ N + G IP  +  L  +  IDLS+NNLSG IP
Sbjct: 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  324 bits (834), Expect = 1e-97
 Identities = 160/683 (23%), Positives = 253/683 (37%), Gaps = 111/683 (16%)

Query: 2   NASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGL 61
             S       LE LDLS N+I+G               LK L ++ N  +  +   +   
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGAN-VVGWVLSDGCGELKHLAISGNKISGDV--DVSRC 199

Query: 62  SSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGG 121
            +L  L ++ N  +  I    L   S L+ LD++GN +      +      +L  L +  
Sbjct: 200 VNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSG-DFSRAISTCTELKLLNISS 256

Query: 122 ---SG-IPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDL 177
               G IP             L SL+ L L+  KF G + +        L  L L  +  
Sbjct: 257 NQFVGPIPP----------LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306

Query: 178 HVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIV 237
           +   +     S + L+ L++      G L     LK + L+ LD+ +     N    +  
Sbjct: 307 Y-GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF-----N----EFS 356

Query: 238 GESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLP--WCLANMTSLQ 295
           G  +P     SLTN S +              L  L +  N+    +    C     +LQ
Sbjct: 357 G-ELPE----SLTNLSAS--------------LLTLDLSSNNFSGPILPNLCQNPKNTLQ 397

Query: 296 VLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTEN 355
            LY  +N  TG I P L     L  L++  N L G++P  L +L+ LR L +  N L   
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457

Query: 356 ISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKF 415
           I    LM++ ++E LIL  N                                        
Sbjct: 458 I-PQELMYVKTLETLILDFNDL-------------------------------------- 478

Query: 416 QLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNS 475
                        G  P  L +  +LN ++LS+  L+GE P W +    NL  L L+NNS
Sbjct: 479 ------------TGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNS 525

Query: 476 LFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFAD 535
             G+    +   + L  LD+  N F G IP  +           ++ N   G       +
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM-----FKQSGKIAANFIAGKRYVYIKN 580

Query: 536 MKMLERLDISNN--QLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQL 593
             M +    + N  +  G   E++     +     +++    GH      N  ++M L +
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNR-LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639

Query: 594 DGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIE 653
             N   G IP+ +     L  L L  N + G IP  +G+L  L  + + +N L+G IP  
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699

Query: 654 FCQRDSLKILDLSNNSIFGTLPS 676
                 L  +DLSNN++ G +P 
Sbjct: 700 MSALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  115 bits (291), Expect = 2e-26
 Identities = 43/234 (18%), Positives = 90/234 (38%), Gaps = 27/234 (11%)

Query: 703 DNPHLVTLDLSYNSLH---GSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLID 759
            +  + ++DLS   L+    ++ + +  L  L  L L++++I G +         +  +D
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLD 106

Query: 760 LSHNNLSGRIPPC--------LVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPP 811
           LS N+LSG +           L   +++          S   +  S+     L       
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL-EVLDLSA----- 160

Query: 812 MGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNL 871
                    +  N+  +        +  + +S NK++G++   +     +  L++S NN 
Sbjct: 161 ------NSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNF 212

Query: 872 TGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD 925
           +  IP    +   ++ LD+S N L G     +     L++  ++ N   G IP 
Sbjct: 213 STGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  283 bits (725), Expect = 4e-83
 Identities = 131/749 (17%), Positives = 239/749 (31%), Gaps = 113/749 (15%)

Query: 216 NLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYI 275
           + E  D        +    Q+  +   ++  L+LT++ L    +      +   L  L +
Sbjct: 5   SHEVADCS------HLKLTQVPDDLPTNITVLNLTHNQL--RRLPAANFTRYSQLTSLDV 56

Query: 276 RDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLC 335
             N +    P     +  L+VL    N+L+            L +L++ +N ++      
Sbjct: 57  GFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP 116

Query: 336 LANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQT 395
                +L  LD+S+N L+      + + L +++EL+LSNN    +      +F  S L+ 
Sbjct: 117 FVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

Query: 396 FNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEF 455
                N              Q+   S          P   +    L  + L+++ L    
Sbjct: 176 LELSSN--------------QIKEFS----------PGCFHAIGRLFGLFLNNVQLGPSL 211

Query: 456 PNWLLE--NNTNLETLLLANNSLFGSFRMPIHSHQ--KLATLDVFNNFFQGHIPVEIGTY 511
              L     NT++  L L+N+ L  +        +   L  LD+  N            +
Sbjct: 212 TEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-W 270

Query: 512 LPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSN 571
           LP L    L  N        S   +  +  L++  +                    ++S 
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS----------------FTKQSISL 314

Query: 572 NRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHL--FGKIPRW 629
             L          L  L  L ++ N+  G      +    L+ L LS++           
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNET 374

Query: 630 LGNLPT--LQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLP-SCFSP-ASIEQ 685
             +L    L  + +  N +       F     L++LDL  N I   L    +    +I +
Sbjct: 375 FVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFE 434

Query: 686 VHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHG--SIPNRIDRLPQLNYLLLAHNYIKG 743
           ++LS NK      +     P L  L L   +L    S P+    L  L  L L++N I  
Sbjct: 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

Query: 744 EIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSAC 803
                L  L+++ ++DL HNNL+                                     
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLA------------------------------------- 517

Query: 804 LPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHA 863
                         +          Y  + L+ +  ++L  N            L  +  
Sbjct: 518 -------------RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564

Query: 864 LNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQL-IVLNTLEVFKVAYNNLSGK 922
           ++L  NNL     + F+N   ++SL+L  NL+              L    + +N     
Sbjct: 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624

Query: 923 IPDRAQFSTFEEDSYEGNPFLCGQPLSKS 951
               A F  +  +++   P L    L  +
Sbjct: 625 CESIAWFVNWINETHTNIPELSSHYLCNT 653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  266 bits (683), Expect = 2e-77
 Identities = 126/680 (18%), Positives = 219/680 (32%), Gaps = 71/680 (10%)

Query: 11  QLESLDLSWNNIAGCVQNESLERLSR--LTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLS 68
             E  D S            L ++     TN+  L L  N       ++    S L  L 
Sbjct: 5   SHEVADCSHLK---------LTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLD 55

Query: 69  LADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRID 128
           +  N ++     +    L  L+ L++  N +  L   K F     L  L+L  + I +I 
Sbjct: 56  VGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTELHLMSNSIQKIK 113

Query: 129 GSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDL-HVSQLLQSIA 187
            +          +L TL LSH                NL+EL+L  + +  +      I 
Sbjct: 114 NN----PFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIF 168

Query: 188 SFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFL 247
           + +SLK L +    +K       F     L  L +  VQ+  +      +  +  S+  L
Sbjct: 169 ANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227

Query: 248 SLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGN 307
           SL+NS L+  +       +  +L  L +  N+L        A +  L+  +   N +   
Sbjct: 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287

Query: 308 ISPGLCELVLLRKLYIDNNDLRGSL---------PLCLANLTSLRVLDVSYNQLTENISS 358
            S  L  L  +R L +  +  + S+               L  L  L++  N +   I S
Sbjct: 288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKS 346

Query: 359 SSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLT 418
           +    L +++ L LSN+      ++ E   +L+                         L 
Sbjct: 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS----------------------PLH 384

Query: 419 SISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFG 478
            ++L+         +       L  ++L    +  E          N+  + L+ N    
Sbjct: 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444

Query: 479 SFRMPIHSHQKLATLDVFNNFFQG-HIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMK 537
             R        L  L +     +           L  L  L+LS N            ++
Sbjct: 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504

Query: 538 MLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNN 597
            LE LD+ +N L                   L  +   G        L++L  L L+ N 
Sbjct: 505 KLEILDLQHNNLA-----------------RLWKHANPGGPIYFLKGLSHLHILNLESNG 547

Query: 598 FIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQR 657
           F     E     + L+ + L  N+L         N  +L+ + +  N +       F   
Sbjct: 548 FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA 607

Query: 658 -DSLKILDLSNNSIFGTLPS 676
             +L  LD+  N    T  S
Sbjct: 608 FRNLTELDMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  261 bits (670), Expect = 1e-75
 Identities = 130/718 (18%), Positives = 244/718 (33%), Gaps = 112/718 (15%)

Query: 63  SLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGS 122
           S      +  +L    D    +  +N+  L++T N +  L    +F    +L +L +G +
Sbjct: 5   SHEVADCSHLKLTQVPD----DLPTNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFN 59

Query: 123 GIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQL 182
            I +++          LP LK L L H +    + ++     TNL EL L  + +   + 
Sbjct: 60  TISKLEPE----LCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIK- 113

Query: 183 LQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMP 242
                   +L  L +    L         ++ +NL+ L +                    
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLL-------------------- 152

Query: 243 SLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSN 302
           S N +    S        +  +     L+ L +  N +++  P C   +  L  L+ ++ 
Sbjct: 153 SNNKIQALKSE-------ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205

Query: 303 QLTGNISPGLCE---LVLLRKLYIDNNDLRGSLPLCLANL--TSLRVLDVSYNQLTENIS 357
           QL  +++  LC       +R L + N+ L  +       L  T+L +LD+SYN L   + 
Sbjct: 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VG 264

Query: 358 SSSLMHLTSIEELILSNNHFFQI-PISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQ 416
           + S   L  +E   L  N+   +   SL  LFN+                          
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV-------------------------- 298

Query: 417 LTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSL 476
                            +L  +      ++S  +L     ++  +    LE L + +N +
Sbjct: 299 ----------------RYLNLKRSFTKQSISLASLPK-IDDFSFQWLKCLEHLNMEDNDI 341

Query: 477 FGSFRMPIHSHQKLATLDVFNNFFQGHIPVE---IGTYLPGLMELNLSRNAFNGSIPSSF 533
            G           L  L + N+F           +      L  LNL++N  +     +F
Sbjct: 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401

Query: 534 ADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKF-NLTNLMTLQ 592
           + +  LE LD+  N++  E+  +   G  ++  + LS N+    +    F  + +L  L 
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ-LTRNSFALVPSLQRLM 460

Query: 593 LDGNNF--IGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPI 650
           L       +   P        L  L LS+N++       L  L  L+ + + +NNL    
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLW 520

Query: 651 PIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTL 710
                      +  LS+               +  ++L  N  +     +  D   L  +
Sbjct: 521 KHANPGGPIYFLKGLSH---------------LHILNLESNGFDEIPVEVFKDLFELKII 565

Query: 711 DLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLC-QLKEVRLIDLSHNNLSG 767
           DL  N+L+    +  +    L  L L  N I            + +  +D+  N    
Sbjct: 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  256 bits (655), Expect = 2e-73
 Identities = 123/634 (19%), Positives = 223/634 (35%), Gaps = 74/634 (11%)

Query: 171 ILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVN 230
           + D S L ++Q+   +   T++  L++    L+  L   +F ++  L  LD+G+      
Sbjct: 8   VADCSHLKLTQVPDDL--PTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGF------ 58

Query: 231 TNFLQIVGE----SMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPW 286
            N +  +       +P L  L+L ++ L    + D+      +L  L++  N ++     
Sbjct: 59  -NTISKLEPELCQKLPMLKVLNLQHNEL--SQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115

Query: 287 CLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLP--LCLANLTSLRV 344
                 +L  L  S N L+        +L  L++L + NN ++      L +   +SL+ 
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

Query: 345 LDVSYNQLTENISSSSLMHLTSIEELILSNNHF-FQIPISLEPLFNLSKLQTFNGEINAQ 403
           L++S NQ+ E  S      +  +  L L+N      +   L      + ++  +      
Sbjct: 176 LELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS------ 228

Query: 404 TESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSG----EFPNWL 459
                        L++  LS      TF         L   NL+ L+LS        N  
Sbjct: 229 -------------LSNSQLST-TSNTTF-------LGLKWTNLTMLDLSYNNLNVVGNDS 267

Query: 460 LENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGH--------IPVEIGTY 511
                 LE   L  N++   F   +H    +  L++  +F +          I      +
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327

Query: 512 LPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMA---TGCFSLEILA 568
           L  L  LN+  N   G   + F  +  L+ L +SN+  +                L IL 
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387

Query: 569 LSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIP-ESLSKCYMLRGLYLSDNHLFGKIP 627
           L+ N++          L +L  L L  N    E+  +       +  +YLS N       
Sbjct: 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 447

Query: 628 RWLGNLPTLQYIIMPNNNLEG--PIPIEFCQRDSLKILDLSNNSIFGTLPSCFSP-ASIE 684
                +P+LQ +++    L+     P  F    +L ILDLSNN+I             +E
Sbjct: 448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE 507

Query: 685 QVHLSKNKIE--------GRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLL 736
            + L  N +         G     +    HL  L+L  N            L +L  + L
Sbjct: 508 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567

Query: 737 AHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIP 770
             N +             ++ ++L  N ++    
Sbjct: 568 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  227 bits (582), Expect = 1e-63
 Identities = 117/590 (19%), Positives = 224/590 (37%), Gaps = 68/590 (11%)

Query: 1   MNASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGG 60
           ++   F     L  L L  N+I   ++N       +  NL  L L+ N  +++   +   
Sbjct: 88  LSDKTFAFCTNLTELHLMSNSIQK-IKNNP---FVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 61  LSSLRHLSLADNRLNGSIDIK-GLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYL 119
           L +L+ L L++N++      +  + + S+L++L+++ N I+    P  F  + +L  L+L
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF-SPGCFHAIGRLFGLFL 202

Query: 120 GGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLH-NFTNLEELILDESDLH 178
               +      K+   + +  S++ L LS+++   T     L   +TNL  L L  ++L+
Sbjct: 203 NNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261

Query: 179 VSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVG 238
           V     S A    L++  ++   ++  L         N+ YL++                
Sbjct: 262 VVG-NDSFAWLPQLEYFFLEYNNIQH-LFSHSLHGLFNVRYLNL---------------- 303

Query: 239 ESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLY 298
                 +F   + S  +   I D     L  L+ L + DND+          + +L+ L 
Sbjct: 304 ----KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359

Query: 299 ASSNQLTGNISPGL----CELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTE 354
            S++  +                L  L +  N +        + L  L VLD+  N++ +
Sbjct: 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419

Query: 355 NISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPK 414
            ++      L +I E+ LS N + Q+  +      +  LQ                    
Sbjct: 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNS--FALVPSLQRLM----------------- 460

Query: 415 FQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANN 474
             L  ++L       + P       +L  ++LS+ N++    + +LE    LE L L +N
Sbjct: 461 --LRRVALKN---VDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHN 514

Query: 475 SL--------FGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFN 526
           +L         G     +     L  L++ +N F   IPVE+   L  L  ++L  N  N
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-IPVEVFKDLFELKIIDLGLNNLN 573

Query: 527 GSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQG 576
               S F +   L+ L++  N +T    +       +L  L +  N    
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  199 bits (508), Expect = 9e-54
 Identities = 99/466 (21%), Positives = 172/466 (36%), Gaps = 43/466 (9%)

Query: 340 TSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGE 399
            S  V D S+ +LT+ +        T+I  L L++N   ++P +       S+L + +  
Sbjct: 4   VSHEVADCSHLKLTQ-VPDDL---PTNITVLNLTHNQLRRLPAA--NFTRYSQLTSLDVG 57

Query: 400 INAQTESHYDSLTPKFQLTSISLSG----YVDGGTFPEFLYHQHDLNSVNLSHLNLSG-- 453
            N  ++   +       L  ++L       +   TF             NL+ L+L    
Sbjct: 58  FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA---------FCTNLTELHLMSNS 108

Query: 454 --EFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTY 511
             +  N       NL TL L++N L  +        + L  L + NN  Q     E+  +
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF 168

Query: 512 -LPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCF--SLEILA 568
               L +L LS N      P  F  +  L  L ++N QL   + E++       S+  L+
Sbjct: 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228

Query: 569 LSNNRLQGHIFSEKFNL--TNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKI 626
           LSN++L     +    L  TNL  L L  NN      +S +    L   +L  N++    
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288

Query: 627 PRWLGNLPTLQYIIMPNN---------NLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSC 677
              L  L  ++Y+ +  +         +L       F     L+ L++ +N I G   + 
Sbjct: 289 SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 348

Query: 678 FSP-ASIEQVHLSKNKIEGRLESIIH----DNPHLVTLDLSYNSLHGSIPNRIDRLPQLN 732
           F+   +++ + LS +    R  +        +  L  L+L+ N +     +    L  L 
Sbjct: 349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408

Query: 733 YLLLAHNYIKGEIPVQ-LCQLKEVRLIDLSHNNLSGRIPPCLVNTS 777
            L L  N I  E+  Q    L+ +  I LS+N              
Sbjct: 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP 454

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  169 bits (429), Expect = 1e-43
 Identities = 86/406 (21%), Positives = 149/406 (36%), Gaps = 32/406 (7%)

Query: 8   PFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHL 67
            +  L  LDLS+NN+         +  + L  L++ +L  N+  +    SL GL ++R+L
Sbjct: 246 KWTNLTMLDLSYNNLNV----VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301

Query: 68  SLADNRLNGSIDIKGLNS--------LSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYL 119
           +L  +    SI +  L          L  LE L+M  N I  +     F GL  L  L L
Sbjct: 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK-SNMFTGLINLKYLSL 360

Query: 120 GGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHV 179
             S       +       +   L  L L+  K    + +       +LE L L  +++  
Sbjct: 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK-IESDAFSWLGHLEVLDLGLNEIGQ 419

Query: 180 SQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQ---VDVNTNFLQI 236
               Q      ++  + +        L    F    +L+ L +  V    VD + +  Q 
Sbjct: 420 ELTGQEWRGLENIFEIYLSYNKYLQ-LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ- 477

Query: 237 VGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRD--------GLPWCL 288
               + +L  L L+N+++    I D  L  L  L+ L ++ N+L          G  + L
Sbjct: 478 ---PLRNLTILDLSNNNI--ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 532

Query: 289 ANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVS 348
             ++ L +L   SN           +L  L+ + +  N+L         N  SL+ L++ 
Sbjct: 533 KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 592

Query: 349 YNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQ 394
            N +T            ++ EL +  N F     S+    N     
Sbjct: 593 KNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINET 638

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  242 bits (619), Expect = 3e-69
 Identities = 98/558 (17%), Positives = 192/558 (34%), Gaps = 49/558 (8%)

Query: 232 NFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANM 291
           NF +I      S   L L+ + L    +          LQ L +   +++        ++
Sbjct: 18  NFYKIPDNLPFSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75

Query: 292 TSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQ 351
           + L  L  + N +          L  L+KL     +L       + +L +L+ L+V++N 
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 352 LTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSL 411
           +          +LT++E L LS+N    I  +   L  L ++   N  ++          
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD--LRVLHQMPLLNLSLD---------- 183

Query: 412 TPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLL 471
                L+   ++  +  G F E       L+ + L +   S       ++    LE   L
Sbjct: 184 -----LSLNPMNF-IQPGAFKEI-----RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232

Query: 472 ANNSLFGSFRMPIHSHQKLATL---------DVFNNFFQGHIPVEIGTYLPGLMELNLSR 522
                     +       L  L           + +++   I  ++   L  +   +L  
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII-DLFNCLTNVSSFSLVS 291

Query: 523 NAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEK 582
                    S+      + L++ N +                 +  L+    +G     +
Sbjct: 292 VTIERVKDFSY--NFGWQHLELVNCKFGQFPT------LKLKSLKRLTFTSNKGGNAFSE 343

Query: 583 FNLTNLMTLQLDGN--NFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYII 640
            +L +L  L L  N  +F G   +S      L+ L LS N +   +      L  L+++ 
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD 402

Query: 641 MPNNNLEGPIPIE-FCQRDSLKILDLSNNSIFGTLPSCFSP-ASIEQVHLSKNKIEGRL- 697
             ++NL+       F    +L  LD+S+          F+  +S+E + ++ N  +    
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 698 ESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRL 757
             I  +  +L  LDLS   L    P   + L  L  L ++HN            L  +++
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522

Query: 758 IDLSHNNLSGRIPPCLVN 775
           +D S N++       L +
Sbjct: 523 LDYSLNHIMTSKKQELQH 540

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  235 bits (602), Expect = 6e-67
 Identities = 105/606 (17%), Positives = 197/606 (32%), Gaps = 55/606 (9%)

Query: 12  LESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLAD 71
            ++LDLS+N +   + + S         L+ L L+          +   LS L  L L  
Sbjct: 30  TKNLDLSFNPLRH-LGSYSF---FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 72  NRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSK 131
           N +         + LS+L++L      + +L        L+ L  L +  +    I   K
Sbjct: 86  NPIQSLAL-GAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHN---LIQSFK 140

Query: 132 VLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLE--ELILDESDLHVSQLLQSIASF 189
           + +   +L +L+ L LS  K +  +    L     +    L LD S   ++ +       
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 190 TSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSL 249
             L  L++++      +          LE   +   +     N  +    ++  L  L++
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 250 TNSSLNK----HTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLT 305
               L         +      L ++    +    +        +     Q L   + +  
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFG 317

Query: 306 GNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLT-ENISSSSLMHL 364
                    L L     +     +G       +L SL  LD+S N L+ +   S S    
Sbjct: 318 Q-----FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 365 TSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSG 424
           TS++ L LS N    +  +      L +L+  + + +               L  +S   
Sbjct: 373 TSLKYLDLSFNGVITMSSNF---LGLEQLEHLDFQHS--------------NLKQMSE-- 413

Query: 425 YVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSF-RMP 483
                          +L  +++SH +    F        ++LE L +A NS   +F    
Sbjct: 414 -------FSVFLSLRNLIYLDISHTHTRVAFNGIF-NGLSSLEVLKMAGNSFQENFLPDI 465

Query: 484 IHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLD 543
               + L  LD+     +   P    + L  L  LN+S N F       +  +  L+ LD
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNS-LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 524

Query: 544 ISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKF--NLTNLMTLQLDGNNFIGE 601
            S N +     + +     SL  L L+ N        + F   + +   L ++       
Sbjct: 525 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECA 584

Query: 602 IPESLS 607
            P    
Sbjct: 585 TPSDKQ 590

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  233 bits (596), Expect = 4e-66
 Identities = 115/628 (18%), Positives = 212/628 (33%), Gaps = 54/628 (8%)

Query: 166 NLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWV 225
            +  +     +L+  ++  ++    S K+L +    L+  L    F  F  L+ LD+   
Sbjct: 6   VVPNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLS-- 60

Query: 226 QVDVNTNFLQIVGES---MPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRD 282
                     I   +   +  L+ L LT + +   ++       L  LQ L   + +L  
Sbjct: 61  ----RCEIQTIEDGAYQSLSHLSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNLAS 114

Query: 283 GLPWCLANMTSLQVLYASSNQLTG-NISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTS 341
              + + ++ +L+ L  + N +    +      L  L  L + +N ++      L  L  
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 342 LRV----LDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFN 397
           + +    LD+S N +      +       + +L L NN F  + +    +  L+ L+   
Sbjct: 175 MPLLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNN-FDSLNVMKTCIQGLAGLEVHR 231

Query: 398 GEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPN 457
             +             K  L  +                    +    L++L+   +   
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGL----------------CNLTIEEFRLAYLDYYLDDII 275

Query: 458 WLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLME 517
            L    TN+ +  L + ++          +     L++ N  F           L  L  
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT----LKLKSLKR 329

Query: 518 LNLSRNAFNGSIPSSFADMKMLERLDISNNQLTG-EIPERMATGCFSLEILALSNNRLQG 576
           L  + N   G    S  D+  LE LD+S N L+      +   G  SL+ L LS N +  
Sbjct: 330 LTFTSN--KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 577 HIFSEKFNLTNLMTLQLDGNNFIGEIPES-LSKCYMLRGLYLSDNHLFGKIPRWLGNLPT 635
            + S    L  L  L    +N       S       L  L +S  H           L +
Sbjct: 388 -MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 636 LQYIIMPNNNLEGPI-PIEFCQRDSLKILDLSNNSIFGTLPSCFSP-ASIEQVHLSKNKI 693
           L+ + M  N+ +    P  F +  +L  LDLS   +    P+ F+  +S++ +++S N  
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506

Query: 694 EGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLP-QLNYLLLAHNYIKGEIPVQ--LC 750
                        L  LD S N +  S    +   P  L +L L  N        Q  L 
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQ 566

Query: 751 QLKEVRLIDLSHNNLSGRIPPCLVNTSL 778
            +K+ R + +    +    P       +
Sbjct: 567 WIKDQRQLLVEVERMECATPSDKQGMPV 594

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  180 bits (460), Expect = 4e-48
 Identities = 72/431 (16%), Positives = 134/431 (31%), Gaps = 37/431 (8%)

Query: 513 PGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNN 572
                L+LS N        SF     L+ LD+S  ++              L  L L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGN 86

Query: 573 RLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHL-FGKIPRWLG 631
            +Q         L++L  L     N        +     L+ L ++ N +   K+P +  
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 632 NLPTLQYIIMPNNNLEGPIPIEFCQRDSLKI----LDLSNNSIFGTLPSCFSPASIEQVH 687
           NL  L+++ + +N ++     +      + +    LDLS N +    P  F    + ++ 
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206

Query: 688 LSKNKIEGRLESIIHDN-PHLVTLDLSYNSLHGS------IPNRIDRLPQLNYLLLAHNY 740
           L  N     +          L    L                + ++ L  L        Y
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 741 IK---GEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRAS 797
           +     +I      L  V    L    +   +     N                      
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQF------ 319

Query: 798 VYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLT--GEIPTQI 855
                      +  +   + + FT+      +    L S+  +DLS N L+  G      
Sbjct: 320 ----------PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 856 GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIV-LNTLEVFKV 914
              T +  L+LS N +  T+ + F  L+Q+E LD  ++ L       + + L  L    +
Sbjct: 370 FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 915 AYNNLSGKIPD 925
           ++ +       
Sbjct: 429 SHTHTRVAFNG 439

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  175 bits (445), Expect = 4e-46
 Identities = 83/499 (16%), Positives = 150/499 (30%), Gaps = 37/499 (7%)

Query: 443 SVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQG 502
           +     LN   + P+ L     + + L L+ N L         S  +L  LD+     Q 
Sbjct: 11  TYQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 503 HIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCF 562
                  + L  L  L L+ N        +F+ +  L++L      L       +     
Sbjct: 67  IEDGAYQS-LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG-HLK 124

Query: 563 SLEILALSNNRLQGHIFSEKF-NLTNLMTLQLDGNNFIGEIPESLSKCYMLR----GLYL 617
           +L+ L +++N +Q     E F NLTNL  L L  N         L   + +      L L
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 618 SDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQR-DSLKILDLSNNSIFGTLPS 676
           S N +    P     +  L  + + NN     +     Q    L++  L           
Sbjct: 185 SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN---- 239

Query: 677 CFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLL 736
                        K+ +EG L ++  +   L  LD   +     I +  + L  ++   L
Sbjct: 240 -----EGNLEKFDKSALEG-LCNLTIEEFRLAYLDYYLDD----IIDLFNCLTNVSSFSL 289

Query: 737 AHNYIKGEIPVQ-LCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRR 795
               I+           + + L++             L   +      G           
Sbjct: 290 VSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 349

Query: 796 ASVYRSA-CLPGQSSPPMGKEETVQFTTKNMSY------YYQGRILTSMSGIDLSCNKLT 848
             +  S   L  +         T      ++S+            L  +  +D   + L 
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 409

Query: 849 GEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIV-L 906
                 +   L  +  L++SH +        F+ L  +E L ++ N       P +   L
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 907 NTLEVFKVAYNNLSGKIPD 925
             L    ++   L    P 
Sbjct: 470 RNLTFLDLSQCQLEQLSPT 488

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  149 bits (377), Expect = 2e-37
 Identities = 70/384 (18%), Positives = 115/384 (29%), Gaps = 51/384 (13%)

Query: 1   MNASLFTPFQQLESLDLSWNNIAGCVQNESLER--LSRLTNLKFLYLNDNHFN---NSIF 55
           +  +       LE   L           E  ++  L  L NL        + +   + I 
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275

Query: 56  SSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLN 115
                L+++   SL    +    D          + L++              + L++L 
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVKDFSYN---FGWQHLELVNCKFGQFP-TLKLKSLKRLT 331

Query: 116 TLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGT-VVNQKLHNFTNLEELILDE 174
                G             S   LPSL+ L LS          +Q     T+L+ L L  
Sbjct: 332 FTSNKGGNAF---------SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 175 SDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFL 234
           + +    +  +      L+HL  Q   LK       FL  +NL YLD+            
Sbjct: 383 NGV--ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI------------ 428

Query: 235 QIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWC-LANMTS 293
                   S                 +     L  L+ L +  N  ++         + +
Sbjct: 429 --------SHTHTR---------VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471

Query: 294 LQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLT 353
           L  L  S  QL          L  L+ L + +N+           L SL+VLD S N + 
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531

Query: 354 ENISSSSLMHLTSIEELILSNNHF 377
            +         +S+  L L+ N F
Sbjct: 532 TSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  141 bits (358), Expect = 4e-35
 Identities = 74/451 (16%), Positives = 124/451 (27%), Gaps = 88/451 (19%)

Query: 340 TSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGE 399
            S + LD+S+N L   + S S      ++ L LS      I                   
Sbjct: 28  FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIE------------------ 68

Query: 400 INAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWL 459
                                                    L+++ L+   +        
Sbjct: 69  --------------------------------DGAYQSLSHLSTLILTGNPIQSLALGAF 96

Query: 460 LENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELN 519
               ++L+ L+    +L      PI   + L  L+V +N  Q     E  + L  L  L+
Sbjct: 97  -SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155

Query: 520 LSRNAFNGSIPSSFADMKMLE----RLDISNNQLTGEIPERMATGCFSLEILALSNNRLQ 575
           LS N       +    +  +      LD+S N +    P   A     L  L L NN   
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG--AFKEIRLHKLTLRNNFDS 213

Query: 576 GHIFSEKF-NLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLP 634
            ++       L  L   +L    F                   ++ +L       L  L 
Sbjct: 214 LNVMKTCIQGLAGLEVHRLVLGEF------------------RNEGNLEKFDKSALEGLC 255

Query: 635 TLQYIIMPNNNLE---GPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKN 691
            L         L+     I   F    ++    L + +I       ++    + + L   
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNC 314

Query: 692 KIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYI--KGEIPVQL 749
           K                   L++ S  G        LP L +L L+ N +  KG      
Sbjct: 315 KFGQ-----FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 750 CQLKEVRLIDLSHNNLSGRIPPCLVNTSLNE 780
                ++ +DLS N +       L    L  
Sbjct: 370 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 400

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.8 bits (187), Expect = 3e-14
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 1/92 (1%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
           L +++ +DLS  +L    PT    L+ +  LN+SHNN        +  L  ++ LD S N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528

Query: 894 LLHGKIPPQL-IVLNTLEVFKVAYNNLSGKIP 924
            +      +L    ++L    +  N+ +    
Sbjct: 529 HIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 69.3 bits (170), Expect = 4e-12
 Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 3/114 (2%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 892
           L+S+  + ++ N         I   L  +  L+LS   L    PT F++L  ++ L++S+
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503

Query: 893 NLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD--RAQFSTFEEDSYEGNPFLC 944
           N            LN+L+V   + N++        +   S+    +   N F C
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 1e-04
 Identities = 12/97 (12%), Positives = 26/97 (26%), Gaps = 27/97 (27%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNL-KQIESLDLSY 892
           L+S+  +++S N            L  +  L+ S N++  +      +    +  L+L+ 
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

Query: 893 NLLHG--------------------------KIPPQL 903
           N                                P   
Sbjct: 553 NDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  234 bits (599), Expect = 2e-66
 Identities = 108/589 (18%), Positives = 195/589 (33%), Gaps = 66/589 (11%)

Query: 12  LESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLAD 71
            E L+ S+N +   +QN +    SRL NL FL L           +      L  L L  
Sbjct: 35  TECLEFSFNVLPT-IQNTTF---SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 72  NRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSK 131
           N L   +    L+    L+ L      I ++         + L +LYLG + I  I    
Sbjct: 91  NPLI-FMAETALSGPKALKHLFFIQTGISSID-FIPLHNQKTLESLYLGSNHISSIK--- 145

Query: 132 VLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTS 191
            L        LK L   +      +  + + +      L L+ +   ++ +         
Sbjct: 146 -LPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV 203

Query: 192 LKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTN 251
            + L+                                    F  +   ++ SL   +  +
Sbjct: 204 FQSLNFGGTQNLL--------------------------VIFKGLKNSTIQSLWLGTFED 237

Query: 252 SSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPG 311
                 +         + ++ + ++ +   +         + LQ L  ++  L+  +  G
Sbjct: 238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSG 296

Query: 312 LCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELI 371
           L  L  L+KL +  N       +  +N  SL  L +  N     + +  L +L ++ EL 
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356

Query: 372 LSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTF 431
           LS++           L NLS LQ+ N   N              +  S+           
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYN--------------EPLSLK---------- 392

Query: 432 PEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLA 491
            E       L  ++L+   L  +      +N   L+ L L+++ L  S          L 
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452

Query: 492 TLDVFNNFFQGHIPVEIGT--YLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQL 549
            L++  N F      +  +   L  L  L LS    +     +F  +KM+  +D+S+N+L
Sbjct: 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512

Query: 550 TGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNF 598
           T    E  A        L L++N +   + S    L+   T+ L  N  
Sbjct: 513 TSSSIE--ALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  232 bits (594), Expect = 9e-66
 Identities = 104/537 (19%), Positives = 185/537 (34%), Gaps = 19/537 (3%)

Query: 242 PSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASS 301
            S   L  + + L   TI +    +L++L  L +    +         +   L  L  ++
Sbjct: 33  NSTECLEFSFNVLP--TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 302 NQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSL 361
           N L       L     L+ L+     +     + L N  +L  L +  N ++ +I     
Sbjct: 91  NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKG 149

Query: 362 MHLTSIEELILSNNHFFQI-PISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSI 420
                ++ L   NN    +    +  L   + L + N   N                 S+
Sbjct: 150 FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL-SLNLNGN-DIAGIEPGAFDSAVFQSL 207

Query: 421 SLSGYVDGGTFPEFLYHQH--DLNSVNLSHLNLSGEFPNWLLEN-NTNLETLLLANNSLF 477
           +  G  +     + L +     L       ++     P         ++E++ L  +  F
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267

Query: 478 GSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMK 537
                  H    L  LD+        +P  +   L  L +L LS N F      S ++  
Sbjct: 268 NISSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFP 325

Query: 538 MLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEK--FNLTNLMTLQLDG 595
            L  L I  N    E+         +L  L LS++ ++          NL++L +L L  
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 596 NNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPR-WLGNLPTLQYIIMPNNNLEGPIPIEF 654
           N  +    E+  +C  L  L L+   L  K  +    NL  L+ + + ++ L+      F
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445

Query: 655 CQRDSLKILDLSNNSIFGTLPSCFSP----ASIEQVHLSKNKIEGRLESIIHDNPHLVTL 710
               +L+ L+L  N          +       +E + LS   +    +        +  +
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505

Query: 711 DLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSG 767
           DLS+N L  S    +  L  + YL LA N+I   +P  L  L + R I+L  N L  
Sbjct: 506 DLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  221 bits (564), Expect = 8e-62
 Identities = 102/520 (19%), Positives = 180/520 (34%), Gaps = 38/520 (7%)

Query: 269 HLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDL 328
             + L    N L        + + +L  L  +  Q+             L  L +  N L
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93

Query: 329 RGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLF 388
                  L+   +L+ L      ++  I    L +  ++E L L +NH   I   L   F
Sbjct: 94  IFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIK--LPKGF 150

Query: 389 NLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLS-GYVDGGTFPEFLYHQHDLNSVNLS 447
              KL+  + + NA      + ++   Q T++SL+    D        +      S+N  
Sbjct: 151 PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFG 210

Query: 448 HLNLSGEFPNWLLENN-TNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPV 506
                      L  +   +L      +                    D+    F+G    
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDD----------------EDISPAVFEGL--- 251

Query: 507 EIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEI 566
                   +  +NL ++ F     ++F     L+ LD++   L+ E+P  +  G  +L+ 
Sbjct: 252 ----CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKK 305

Query: 567 LALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEI-PESLSKCYMLRGLYLSDNHL--F 623
           L LS N+ +        N  +L  L + GN    E+    L     LR L LS + +   
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365

Query: 624 GKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLP-SCFS-PA 681
                 L NL  LQ + +  N         F +   L++LDL+   +      S F    
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425

Query: 682 SIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSI---PNRIDRLPQLNYLLLAH 738
            ++ ++LS + ++   E +    P L  L+L  N          N +  L +L  L+L+ 
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485

Query: 739 NYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSL 778
             +          LK +  +DLSHN L+      L +   
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  214 bits (546), Expect = 2e-59
 Identities = 110/613 (17%), Positives = 207/613 (33%), Gaps = 35/613 (5%)

Query: 168 EELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQV 227
                +  +L ++++  ++    S + L     VL   +    F +  NL +LD+     
Sbjct: 13  VNKTYNCENLGLNEIPGTL--PNSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTR--- 66

Query: 228 DVNTNFLQIVGE----SMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDG 283
                 +  + E    S   L+ L LT + L    + +  L     L+ L+     +   
Sbjct: 67  ----CQIYWIHEDTFQSQHRLDTLVLTANPL--IFMAETALSGPKALKHLFFIQTGISSI 120

Query: 284 LPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLR 343
               L N  +L+ LY  SN ++    P       L+ L   NN +       +++L    
Sbjct: 121 DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180

Query: 344 V--LDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEIN 401
              L+++ N +               + L         +         +  L     E  
Sbjct: 181 NLSLNLNGNDIAG--IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

Query: 402 AQTESHYDSLT--PKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWL 459
              +          +  + SI+L  +          +    L  ++L+  +LS E P+ L
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL 297

Query: 460 LENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELN 519
               + L+ L+L+ N      ++   +   L  L +  N  +  +       L  L EL+
Sbjct: 298 -VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356

Query: 520 LSRNAFNGS--IPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGH 577
           LS +    S        ++  L+ L++S N+    +       C  LE+L L+  RL+  
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKTEAFKECPQLELLDLAFTRLKVK 415

Query: 578 IFSEKF-NLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKI---PRWLGNL 633
                F NL  L  L L  +       +       L+ L L  NH           L  L
Sbjct: 416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475

Query: 634 PTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKI 693
             L+ +++   +L       F     +  +DLS+N +  +     S      ++L+ N I
Sbjct: 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHI 535

Query: 694 EGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLK 753
              L S++       T++L  N L  +  N       L +       ++           
Sbjct: 536 SIILPSLLPILSQQRTINLRQNPLDCTCSNI----YFLEWYKENMQKLEDTEDTLCENPP 591

Query: 754 EVRLIDLSHNNLS 766
            +R + LS   LS
Sbjct: 592 LLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  165 bits (420), Expect = 5e-43
 Identities = 94/506 (18%), Positives = 175/506 (34%), Gaps = 56/506 (11%)

Query: 1   MNASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGG 60
           M  +  +  + L+ L      I+  +       L     L+ LYL  NH ++        
Sbjct: 96  MAETALSGPKALKHLFFIQTGISS-IDFIP---LHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 61  LSSLRHLSLADNRLNGSI--DIKGLNSLSNLEELDMTGNAIENL---------------- 102
              L+ L   +N ++     D+  L   +NL  L++ GN I  +                
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNL-SLNLNGNDIAGIEPGAFDSAVFQSLNFG 210

Query: 103 --------VVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKG 154
                           ++ L            I  +  +       S++++ L    F  
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA--VFEGLCEMSVESINLQKHYFFN 268

Query: 155 TVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKF 214
            + +   H F+ L+EL L  +  H+S+L   +   ++LK L +     +  L       F
Sbjct: 269 -ISSNTFHCFSGLQELDL--TATHLSELPSGLVGLSTLKKLVLSANKFEN-LCQISASNF 324

Query: 215 KNLEYLDMGWVQVDVNTNFLQIVGES---MPSLNFLSLTNSSLNKHTILDQGLCQLVHLQ 271
            +L +L +       NT  L++       + +L  L L++  +      +  L  L HLQ
Sbjct: 325 PSLTHLSIKG-----NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379

Query: 272 GLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPG-LCELVLLRKLYIDNNDLRG 330
            L +  N+              L++L  +  +L    +      L LL+ L + ++ L  
Sbjct: 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439

Query: 331 SLPLCLANLTSLRVLDVSYNQLTENI--SSSSLMHLTSIEELILSNNHFFQIPISLEPLF 388
           S       L +L+ L++  N   +     ++SL  L  +E L+LS      I        
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA--FT 497

Query: 389 NLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSH 448
           +L  +   +   N  T S  ++L+    +  ++L+        P  L       ++NL  
Sbjct: 498 SLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQ 556

Query: 449 LNLSG-----EFPNWLLENNTNLETL 469
             L        F  W  EN   LE  
Sbjct: 557 NPLDCTCSNIYFLEWYKENMQKLEDT 582

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  161 bits (409), Expect = 1e-41
 Identities = 66/359 (18%), Positives = 120/359 (33%), Gaps = 30/359 (8%)

Query: 436 YHQHDLNSVNLSHLNLS---GEFPNWL----LENN-------------TNLETLLLANNS 475
             +    + N  +L L+   G  PN         N              NL  L L    
Sbjct: 9   IEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ 68

Query: 476 LFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFAD 535
           ++        S  +L TL +  N     +     +    L  L   +   +        +
Sbjct: 69  IYWIHEDTFQSQHRLDTLVLTANPLI-FMAETALSGPKALKHLFFIQTGISSIDFIPLHN 127

Query: 536 MKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLD- 594
            K LE L + +N ++  I          L++L   NN +      +  +L     L L+ 
Sbjct: 128 QKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186

Query: 595 GNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGN--LPTLQYIIMPNNNLEGPIPI 652
             N I  I        + + L          I + L N  + +L      + + E   P 
Sbjct: 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246

Query: 653 EF--CQRDSLKILDLSNNSIFGTLPSCFSP-ASIEQVHLSKNKIEGRLESIIHDNPHLVT 709
            F      S++ ++L  +  F    + F   + ++++ L+   +   L S +     L  
Sbjct: 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKK 305

Query: 710 LDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQ-LCQLKEVRLIDLSHNNLSG 767
           L LS N             P L +L +  N  + E+    L  L+ +R +DLSH+++  
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  144 bits (364), Expect = 6e-36
 Identities = 67/426 (15%), Positives = 125/426 (29%), Gaps = 80/426 (18%)

Query: 517 ELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQG 576
             N      N  IP +       E L+ S N L   I     +   +L  L L+  ++  
Sbjct: 16  TYNCENLGLN-EIPGTL--PNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIY- 70

Query: 577 HIFSEKF-NLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPT 635
            I  + F +   L TL L  N  I     +LS    L+ L+     +       L N  T
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 636 LQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEG 695
           L+ + + +N++      +    + LK+LD  NN+I        S                
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ------------- 177

Query: 696 RLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQL--CQLK 753
                       ++L+L+ N +   I            L          I   L    ++
Sbjct: 178 --------QATNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ 228

Query: 754 EVRLIDLSHNNLSGRIPPCLVNTS--------LNEGYHGEVAPTSIWCRRASVYRSACLP 805
            + L      +     P               L + Y   ++  +  C            
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC------------ 276

Query: 806 GQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALN 865
                                        + +  +DL+   L+ E+P+ +  L+ +  L 
Sbjct: 277 ----------------------------FSGLQELDLTATHLS-ELPSGLVGLSTLKKLV 307

Query: 866 LSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLI-VLNTLEVFKVAYNNLSGKIP 924
           LS N        + SN   +  L +  N    ++    +  L  L    ++++++     
Sbjct: 308 LSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367

Query: 925 DRAQFS 930
              Q  
Sbjct: 368 CNLQLR 373

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  103 bits (259), Expect = 6e-23
 Identities = 66/330 (20%), Positives = 108/330 (32%), Gaps = 46/330 (13%)

Query: 2   NASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFS--SLG 59
                + F  L  L +  N     +       L  L NL+ L L+ +    S      L 
Sbjct: 317 CQISASNFPSLTHLSIKGNTKRLELGTGC---LENLENLRELDLSHDDIETSDCCNLQLR 373

Query: 60  GLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYL 119
            LS L+ L+L+ N    S+  +       LE LD+    ++       F+ L  L  L L
Sbjct: 374 NLSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432

Query: 120 GGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHV 179
             S +              LP+L+ L L    F      QK ++   L            
Sbjct: 433 SHSLLDISSEQ----LFDGLPALQHLNLQGNHFPK-GNIQKTNSLQTL------------ 475

Query: 180 SQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGE 239
                       L+ L +  C L   +    F   K + ++D+       +        E
Sbjct: 476 ----------GRLEILVLSFCDLSS-IDQHAFTSLKMMNHVDLS------HNRLTSSSIE 518

Query: 240 SMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYA 299
           ++  L  + L  +S +   IL   L  L   + + +R N L      C  +       Y 
Sbjct: 519 ALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLD-----CTCSNIYFLEWYK 573

Query: 300 SSNQLTGNISPGLCE-LVLLRKLYIDNNDL 328
            + Q   +    LCE   LLR + + +  L
Sbjct: 574 ENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.5 bits (142), Expect = 8e-09
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 3/95 (3%)

Query: 834 LTSMSGIDLSCNKLT--GEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 891
           L ++  +DLS + +        Q+  L+ + +LNLS+N         F    Q+E LDL+
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408

Query: 892 YNLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPD 925
           +  L  K        L+ L+V  ++++ L      
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.5 bits (142), Expect = 9e-09
 Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 5/115 (4%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIG---YLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDL 890
           L ++  ++L  N        +      L R+  L LS  +L+      F++LK +  +DL
Sbjct: 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507

Query: 891 SYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDR-AQFSTFEEDSYEGNPFLC 944
           S+N L      + +         +A N++S  +P      S     +   NP  C
Sbjct: 508 SHNRLTS-SSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.1 bits (141), Expect = 1e-08
 Identities = 14/112 (12%), Positives = 39/112 (34%), Gaps = 2/112 (1%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
             ++  +      ++      +     + +L L  N+++          ++++ LD   N
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163

Query: 894 LLHGKIPPQLIVLNTLEVFKV--AYNNLSGKIPDRAQFSTFEEDSYEGNPFL 943
            +H      +  L       +    N+++G  P     + F+  ++ G   L
Sbjct: 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL 215

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.8 bits (135), Expect = 5e-08
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 4/96 (4%)

Query: 834 LTSMSGIDLSCNKLTG-EIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 892
              +  +DL+  +L   +  +    L  +  LNLSH+ L  +    F  L  ++ L+L  
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458

Query: 893 NLLHGKI---PPQLIVLNTLEVFKVAYNNLSGKIPD 925
           N            L  L  LE+  +++ +LS     
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  228 bits (584), Expect = 4e-64
 Identities = 91/567 (16%), Positives = 170/567 (29%), Gaps = 61/567 (10%)

Query: 240 SMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDG----LPWCLANMTSLQ 295
           S   +  LSL          +   + QL  L+ L +  +  +       P  ++   S +
Sbjct: 79  SNGRVTGLSLEGFGA--SGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 296 VLYASSNQLTGNISPGLCELVL--LRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLT 353
                                   L K  I+++  + S+            +    N +T
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 354 ENISSSSLMHLTSIEELILSNNHFFQIPIS----LEPLFNLSKLQTFNGEINAQTESHYD 409
               S ++M LT + +  + N+ F    I      E      + +T + + +        
Sbjct: 197 F--VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWD-------- 246

Query: 410 SLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWL-------LEN 462
           +L     LT + +    +    P FL    ++  +N++                      
Sbjct: 247 NLK---DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPV 303

Query: 463 NTNLETLLLANNSLF-GSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLS 521
              ++ + +  N+L        +   +KL  L+   N  +G +P   G+    L  LNL+
Sbjct: 304 GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS-EIKLASLNLA 361

Query: 522 RNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQG----- 576
            N       +     + +E L  ++N+L        A     +  +  S N +       
Sbjct: 362 YNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421

Query: 577 --HIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHL-------FGKIP 627
              +    F   N+ ++ L  N       E  S    L  + L  N L            
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481

Query: 628 RWLGNLPTLQYIIMPNNNLEG-PIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPAS---- 682
               N   L  I +  N L              L  +DLS NS F   P+    +S    
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKG 540

Query: 683 ---IEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHN 739
                Q     N+        I   P L  L +  N +   +  +I   P ++ L +  N
Sbjct: 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDN 597

Query: 740 YIKGEIPVQLCQLKEVRLIDLSHNNLS 766
                    +C   E  +  L ++   
Sbjct: 598 PNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  218 bits (558), Expect = 1e-60
 Identities = 91/659 (13%), Positives = 201/659 (30%), Gaps = 134/659 (20%)

Query: 34  LSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELD 93
           L+    +  L L     +  +  ++G L+ L  L+L  +    +  + G   +S     +
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 94  MTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFK 153
                             ++   ++   + +                 L    ++    +
Sbjct: 137 -----------------QKQKMRMHYQKTFVDYD-------PREDFSDLIKDCINSDPQQ 172

Query: 154 GTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLK 213
            ++   K  +   L++  + +   +++ + +++   T L+   M +       +  +  +
Sbjct: 173 KSI---KKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVA-ENICEAWE 228

Query: 214 FKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGL 273
            +N EY                +  +++  L  + +   +    T L   L  L  +Q +
Sbjct: 229 NENSEYAQ--------QYKTEDLKWDNLKDLTDVEV--YNCPNLTKLPTFLKALPEMQLI 278

Query: 274 YIRDNDLRDGLPWC--------LANMTSLQVLYASSNQL-TGNISPGLCELVLLRKLYID 324
            +  N    G                  +Q++Y   N L T  +   L ++  L  L   
Sbjct: 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL 338

Query: 325 NNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISL 384
            N L G LP    +   L  L+++YNQ+TE I ++       +E L  ++N    IP   
Sbjct: 339 YNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIF 396

Query: 385 EPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSV 444
           +   ++S +                                                  +
Sbjct: 397 D-AKSVSVMSA------------------------------------------------I 407

Query: 445 NLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHI 504
           + S+  +                         F            ++++++ NN      
Sbjct: 408 DFSYNEIGSVDGK------------------NFDPLDPTPFKGINVSSINLSNNQISKFP 449

Query: 505 PVEIGTYLPGLMELNLSRNAFNG-------SIPSSFADMKMLERLDISNNQLTGEIPERM 557
             E+ +    L  +NL  N               +F +  +L  +D+  N+LT    +  
Sbjct: 450 K-ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR 508

Query: 558 ATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQL------DGNNFIGEIPESLSKCYM 611
           AT    L  + LS N       ++  N + L    +       GN  + E PE ++ C  
Sbjct: 509 ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567

Query: 612 LRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSI 670
           L  L +  N +  K+   +   P +  + + +N          C      +  L  +  
Sbjct: 568 LTQLQIGSNDI-RKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  200 bits (511), Expect = 1e-54
 Identities = 68/525 (12%), Positives = 148/525 (28%), Gaps = 74/525 (14%)

Query: 288 LANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRG----SLPLCLANLTSLR 343
           L +   +  L       +G +   + +L  L  L + ++  +       P  ++   S  
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 344 VLDVSYNQLTENI-SSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINA 402
                     +           + + +  ++++   +            K        N 
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS--SRITLKDTQIGQLSN- 193

Query: 403 QTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLEN 462
                         +T +            + +     L    + +     E        
Sbjct: 194 -------------NITFV-----------SKAVMRLTKLRQFYMGNSPFVAENI------ 223

Query: 463 NTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSR 522
               E         + +  +   + + L  ++V+N      +P  +   LP +  +N++ 
Sbjct: 224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVAC 282

Query: 523 NAF--------NGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRL 574
           N          +    +     + ++ + I  N L     E        L +L    N+L
Sbjct: 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL 342

Query: 575 QGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWL--GN 632
           +G +     +   L +L L  N               +  L  + N L   IP      +
Sbjct: 343 EGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKS 400

Query: 633 LPTLQYIIMPNNNLEG-------PIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPA-SIE 684
           +  +  I    N +         P+     +  ++  ++LSNN I       FS    + 
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 685 QVHLSKNKIEG-------RLESIIHDNPHLVTLDLSYNSLHGSIPN-RIDRLPQLNYLLL 736
            ++L  N +                +   L ++DL +N L     + R   LP L  + L
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520

Query: 737 AHNYIKGEIPVQLCQLKEVRLI------DLSHNNLSGRIPPCLVN 775
           ++N      P Q      ++        D   N      P  +  
Sbjct: 521 SYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  162 bits (411), Expect = 1e-41
 Identities = 67/577 (11%), Positives = 156/577 (27%), Gaps = 130/577 (22%)

Query: 4   SLFTPFQQLESLDLSWNNIAGCVQNESLERLSRL-TNLKFLYLNDNHFNNSIFSSLGGLS 62
           +      + +  DL  + I    Q +S+++ SR+      +    N+    +  ++  L+
Sbjct: 148 TFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLT 206

Query: 63  SLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGG- 121
            LR   + ++          +      E  +              +  L+ L  + +   
Sbjct: 207 KLRQFYMGNSPFVAEN----ICEAWENENSEYAQQ---YKTEDLKWDNLKDLTDVEVYNC 259

Query: 122 ---SGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNF-------TNLEELI 171
              + +P          + +LP ++ + ++  +       +              ++ + 
Sbjct: 260 PNLTKLP--------TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311

Query: 172 LDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNT 231
           +  ++L    +  S+     L  L      L+G L    F     L  L++         
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL--PAFGSEIKLASLNLA-------Y 362

Query: 232 NFLQIV----GESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLR------ 281
           N +  +          +  LS  ++ L  +         +  +  +    N++       
Sbjct: 363 NQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421

Query: 282 -DGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRG-------SLP 333
            D L        ++  +  S+NQ++            L  + +  N L            
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481

Query: 334 LCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKL 393
               N   L  +D+ +N+LT+         L  +  + LS N F + P       N S L
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ---PLNSSTL 538

Query: 394 QTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSG 453
           + F                                             N  +        
Sbjct: 539 KGFG------------------------------------------IRNQRDAQGNRTLR 556

Query: 454 EFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLP 513
           E+P   +    +L  L + +N +                           +  +I    P
Sbjct: 557 EWPEG-ITLCPSLTQLQIGSNDI-------------------------RKVNEKI---TP 587

Query: 514 GLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLT 550
            +  L++  N       S            +  ++  
Sbjct: 588 NISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  148 bits (375), Expect = 4e-37
 Identities = 52/420 (12%), Positives = 111/420 (26%), Gaps = 107/420 (25%)

Query: 515 LMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRL 574
           +  L+L     +G +P +   +  LE L + ++                           
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERL------------------- 123

Query: 575 QGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYM--LRGLYLSDNHLFGKIPRWLGN 632
                       +    Q    ++     +   +     L    ++ +     I +    
Sbjct: 124 --FGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181

Query: 633 LPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNK 692
                 I   +NN+   +     +   L+   + N+                        
Sbjct: 182 TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEA-------------- 226

Query: 693 IEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQL 752
                             +  Y   + +   + D L  L  + + +     ++P  L  L
Sbjct: 227 --------------WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272

Query: 753 KEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPM 812
            E++LI+++ N             +L +   G                            
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVG---------------------------- 304

Query: 813 GKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKL-TGEIPTQIGYLTRIHALNLSHNNL 871
                                   +  I +  N L T  + T +  + ++  L   +N L
Sbjct: 305 ----------------------EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL 342

Query: 872 TGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLI-VLNTLEVFKVAYNNLSGKIPDRAQFS 930
            G +P  F +  ++ SL+L+YN +   IP         +E    A+N L   IP+     
Sbjct: 343 EGKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKY-IPNIFDAK 399

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 92.0 bits (229), Expect = 3e-19
 Identities = 38/344 (11%), Positives = 98/344 (28%), Gaps = 89/344 (25%)

Query: 3   ASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFN-------NSIF 55
           A+     +Q+E+L  + N +              ++ +  +  + N          + + 
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFD---AKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426

Query: 56  SSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLN 115
            +     ++  ++L++N+++     +  ++ S L  +++ GN +                
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPK-ELFSTGSPLSSINLMGNML---------------- 469

Query: 116 TLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDES 175
                 + IP+       ++  +   L ++ L   K      + +      L  + L  S
Sbjct: 470 ------TEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL--S 521

Query: 176 DLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQ 235
               S+      + ++LK   +++                                    
Sbjct: 522 YNSFSKFPTQPLNSSTLKGFGIRNQ----------------------------------- 546

Query: 236 IVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQ 295
                                     +G+     L  L I  ND+R  +   +    ++ 
Sbjct: 547 -------------RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNIS 590

Query: 296 VLYASSNQLTGNISPGLCELVLLRKLYIDNN---DLRGSLPLCL 336
           VL    N         +C  +      +  +   D+RG   L +
Sbjct: 591 VLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDI 634

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 90.5 bits (225), Expect = 1e-18
 Identities = 30/263 (11%), Positives = 68/263 (25%), Gaps = 53/263 (20%)

Query: 701 IHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKG----EIPVQLCQLKEVR 756
           ++ N  +  L L      G +P+ I +L +L  L L  +  K       P  +       
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 757 LIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEE 816
                  +              ++                        P Q S       
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKD---------------CINSDPQQKSIKKSSRI 181

Query: 817 TVQFTTKNMSYYYQGRI------LTSMSGIDLSCNKLTGEIPTQ---------------- 854
           T++ T           +      LT +    +  +    E   +                
Sbjct: 182 TLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE 241

Query: 855 ---IGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH--------GKIPPQL 903
                 L  +  + + +      +PT    L +++ ++++ N            +     
Sbjct: 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADA 301

Query: 904 IVLNTLEVFKVAYNNL-SGKIPD 925
            V   +++  + YNNL +  +  
Sbjct: 302 PVGEKIQIIYIGYNNLKTFPVET 324

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.0 bits (177), Expect = 6e-13
 Identities = 20/216 (9%), Positives = 50/216 (23%), Gaps = 34/216 (15%)

Query: 709 TLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGR 768
             +   +         ++   ++  L L      G +P  + QL E+ ++ L  +     
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 769 IPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYY 828
                              P  I                +     K++      K    Y
Sbjct: 121 ERLFG--------------PKGI--------------SANMSDEQKQKMRMHYQKTFVDY 152

Query: 829 YQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESL 888
                 + +    ++ +     I        +   +    NN+T  +      L ++   
Sbjct: 153 DPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQF 211

Query: 889 DLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIP 924
            +  +    +   +       E     Y        
Sbjct: 212 YMGNSPFVAENICEAWENENSE-----YAQQYKTED 242

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.0 bits (164), Expect = 2e-11
 Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 10/98 (10%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRI------HALNLSHNNLTGTIPTTFSNLKQIES 887
           L  + GIDLS N  +   PTQ    + +      +  +   N      P   +    +  
Sbjct: 512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

Query: 888 LDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD 925
           L +  N +   +  ++     + V  +  N        
Sbjct: 571 LQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLS 605

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.4 bits (160), Expect = 7e-11
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 15/113 (13%)

Query: 834 LTSMSGIDLSCNKLTG-------EIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIE 886
           ++ MS ID S N++          +         + ++NLS+N ++      FS    + 
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 887 SLDLSYNLLHG-------KIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTF 932
           S++L  N+L                    L    + +N L+  + D  + +T 
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTL 512

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.9 bits (156), Expect = 2e-10
 Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
           +  +  ++   N+L G++P   G   ++ +LNL++N +T          +Q+E+L  ++N
Sbjct: 329 MKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387

Query: 894 LLHGKIPPQLIV--LNTLEVFKVAYNNLSGKIPD 925
            L   IP       ++ +     +YN +      
Sbjct: 388 KLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.5 bits (155), Expect = 2e-10
 Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 3/89 (3%)

Query: 832 RILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 891
           +     +  D   N+   E P  I     +  L +  N++         N+     LD+ 
Sbjct: 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLDIK 595

Query: 892 YNLLHGKIPPQLIVLNTLEVFKVAYNNLS 920
            N         +       ++ + Y+   
Sbjct: 596 DNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.1 bits (146), Expect = 3e-09
 Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 7/120 (5%)

Query: 841 DLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG--- 897
           +   +    +    +    R+  L+L     +G +P     L ++E L L  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 898 -KIPPQLIVLNTLEVFKVAYNNLSGKIPD---RAQFSTFEEDSYEGNPFLCGQPLSKSCN 953
              P  +    + E  +    +      D   R  FS   +D    +P       S    
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 5e-09
 Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 11/100 (11%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGY--LTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 891
              ++ IDL  NKLT  +        L  +  ++LS+N+ +   PT   N   ++   + 
Sbjct: 487 TYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544

Query: 892 YNL------LHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD 925
                       + P  + +  +L   ++  N++   + +
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNE 583

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 2e-08
 Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 10/97 (10%)

Query: 834 LTSMSGIDLSCNKLTGEIP--TQIGYLTRIHALNLSHNNLTG-------TIPTTFSNLKQ 884
              +  +  + NKL   IP       ++ + A++ S+N +          +  T      
Sbjct: 376 TEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434

Query: 885 IESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSG 921
           + S++LS N +           + L    +  N L+ 
Sbjct: 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  217 bits (555), Expect = 2e-60
 Identities = 88/540 (16%), Positives = 181/540 (33%), Gaps = 28/540 (5%)

Query: 242 PSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASS 301
            S   + L+ + L    +          LQ L +   ++          +  L  L  + 
Sbjct: 32  SSTKNIDLSFNPLK--ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89

Query: 302 NQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSL 361
           N +          L  L  L      L       +  L +L+ L+V++N +      +  
Sbjct: 90  NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149

Query: 362 MHLTSIEELILSNNHFFQIPI-SLEPLFNLSK-LQTFNGEINAQTESHYDSLTPKFQLTS 419
            +LT++  + LS N+   I +  L+ L    +   + +  +N        +     +L  
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHE 208

Query: 420 ISLSGYVDGGTFPEFLY------HQHDLNSVNLSHLNLSGEFPNWLLENNTNL--ETLLL 471
           ++L G  +     +         H H L             F   ++E   ++  +   L
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 472 ANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPS 531
              + F    +  H    ++ + +     +    +E          L++ R         
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKY---LEDVPKHFKWQSLSIIRCQLKQF--- 322

Query: 532 SFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQ--GHIFSEKFNLTNLM 589
              D+  L+ L ++ N+ +    +       SL  L LS N L   G          +L 
Sbjct: 323 PTLDLPFLKSLTLTMNKGSISFKK---VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379

Query: 590 TLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRW-LGNLPTLQYIIMPNNNLEG 648
            L L  N     +  +      L+ L    + L          +L  L Y+ +   N + 
Sbjct: 380 HLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 649 PIPIEFCQRDSLKILDLSNNSIFGTLPSCF--SPASIEQVHLSKNKIEGRLESIIHDNPH 706
                F    SL  L ++ NS      S    +  ++  + LSK ++E     +      
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498

Query: 707 LVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 766
           L  L++S+N+L     +  ++L  L+ L  + N I+    +     K +   +L++N+++
Sbjct: 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  212 bits (542), Expect = 6e-59
 Identities = 89/592 (15%), Positives = 182/592 (30%), Gaps = 67/592 (11%)

Query: 9   FQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLS 68
               +++DLS+N +   +++ S    S  + L++L L+          +  GL  L +L 
Sbjct: 31  PSSTKNIDLSFNPLKI-LKSYSF---SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI 86

Query: 69  LADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRID 128
           L  N +  S      + L++LE L      + +L        L  L  L +  + I    
Sbjct: 87  LTGNPIQ-SFSPGSFSGLTSLENLVAVETKLASLE-SFPIGQLITLKKLNVAHNFIHSC- 143

Query: 129 GSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELI--LDESDLHVSQLLQSI 186
             K+     +L +L  + LS+   +  +    L       ++   LD S   +  +    
Sbjct: 144 --KLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200

Query: 187 ASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNF 246
                L  L+++       +          L    +                       F
Sbjct: 201 FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL-------------------ILGEF 241

Query: 247 LSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTG 306
               N  + + +I+ +GLC +   +   +   +           + ++  +  +   +  
Sbjct: 242 KDERNLEIFEPSIM-EGLCDVTIDE-FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY 299

Query: 307 NISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTS 366
                + +    + L I    L+        +L  L+ L ++ N+ +    S   + L S
Sbjct: 300 --LEDVPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKGS---ISFKKVALPS 351

Query: 367 IEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYV 426
           +  L LS N               + L+  +   N                         
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI---------------------- 389

Query: 427 DGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHS 486
                        +L  ++  H  L          +   L  L ++  +    F      
Sbjct: 390 ---IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446

Query: 487 HQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISN 546
              L TL +  N F+ +    +      L  L+LS+          F  +  L+ L++S+
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506

Query: 547 NQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNF 598
           N L   +        +SL  L  S NR++      +    +L    L  N+ 
Sbjct: 507 NNLLF-LDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  191 bits (488), Expect = 9e-52
 Identities = 96/557 (17%), Positives = 175/557 (31%), Gaps = 86/557 (15%)

Query: 6   FTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLR 65
           +     L +L L+ N I    Q+ S    S LT+L+ L   +    +     +G L +L+
Sbjct: 76  WHGLHHLSNLILTGNPI----QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 66  HLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLN----TLYLGG 121
            L++A N ++        ++L+NL  +D++ N I+ +    D + LR+      +L +  
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI-TVNDLQFLRENPQVNLSLDMSL 190

Query: 122 SGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQ 181
           + I  I              L  L L        ++   L N   L    L   +    +
Sbjct: 191 NPIDFIQD-----QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245

Query: 182 LLQSIA--SFTSLKHLSMQDCVLKG----ALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQ 235
            L+         L  +++ +  L      +     F    N+  + +  V +    +  +
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK 305

Query: 236 IVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQ 295
                      LS+    L +   LD     L  L+ L +  N            + SL 
Sbjct: 306 -----HFKWQSLSIIRCQLKQFPTLD-----LPFLKSLTLTMNKGSISFK--KVALPSLS 353

Query: 296 VLYASSNQLT--GNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLT 353
            L  S N L+  G  S        LR L +  N     +      L  L+ LD  ++ L 
Sbjct: 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLK 412

Query: 354 ENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTP 413
                S+ + L  +  L +S  +       +     L+ L T                  
Sbjct: 413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGI--FLGLTSLNTL----------------- 453

Query: 414 KFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLAN 473
                                           ++  +      + +  N TNL  L L+ 
Sbjct: 454 -------------------------------KMAGNSFKDNTLSNVFANTTNLTFLDLSK 482

Query: 474 NSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSF 533
             L         +  +L  L++ +N     +       L  L  L+ S N    S     
Sbjct: 483 CQLEQISWGVFDTLHRLQLLNMSHNNLL-FLDSSHYNQLYSLSTLDCSFNRIETSKGILQ 541

Query: 534 ADMKMLERLDISNNQLT 550
              K L   +++NN + 
Sbjct: 542 HFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  191 bits (487), Expect = 1e-51
 Identities = 107/602 (17%), Positives = 184/602 (30%), Gaps = 94/602 (15%)

Query: 87  SNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLY 146
           S+ + +D++ N ++ L     F    +L  L L    I  I+     ++   L  L  L 
Sbjct: 32  SSTKNIDLSFNPLKILK-SYSFSNFSELQWLDLSRCEIETIED----KAWHGLHHLSNLI 86

Query: 147 LSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGAL 206
           L+    +           T+LE L+  E+ L   +    I    +LK L++    +    
Sbjct: 87  LTGNPIQS-FSPGSFSGLTSLENLVAVETKLASLES-FPIGQLITLKKLNVAHNFIHSCK 144

Query: 207 HGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSL----NKHTILDQ 262
               F    NL ++D+             I    +  L      N SL    N    +  
Sbjct: 145 LPAYFSNLTNLVHVDLS------YNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198

Query: 263 GLCQLVHLQGLYIRDNDLRDGLPW-CLANMTSLQVLYASSNQLTGNIS---------PGL 312
              Q + L  L +R N     +   CL N+  L V      +     +          GL
Sbjct: 199 QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258

Query: 313 CELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELIL 372
           C++ +     +   +      +    L ++  + ++   +        +      + L +
Sbjct: 259 CDVTIDE-FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK---YLEDVPKHFKWQSLSI 314

Query: 373 SNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFP 432
                 Q P       +L  L++                                     
Sbjct: 315 IRCQLKQFPT-----LDLPFLKS------------------------------------- 332

Query: 433 EFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIH--SHQKL 490
                      + L+    S  F    L    +L  L L+ N+L  S            L
Sbjct: 333 -----------LTLTMNKGSISFKKVAL---PSLSYLDLSRNALSFSGCCSYSDLGTNSL 378

Query: 491 ATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIP-SSFADMKMLERLDISNNQL 549
             LD+  N     I       L  L  L+   +        S+F  ++ L  LDIS    
Sbjct: 379 RHLDLSFN--GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436

Query: 550 TGEIPERMATGCFSLEILALSNNRLQGHIFSEKF-NLTNLMTLQLDGNNFIGEIPESLSK 608
                + +  G  SL  L ++ N  + +  S  F N TNL  L L               
Sbjct: 437 KI-DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495

Query: 609 CYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNN 668
            + L+ L +S N+L          L +L  +    N +E    I      SL   +L+NN
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

Query: 669 SI 670
           S+
Sbjct: 556 SV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  173 bits (441), Expect = 1e-45
 Identities = 105/656 (16%), Positives = 210/656 (32%), Gaps = 115/656 (17%)

Query: 306 GNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLT 365
           G+++P +  +  +      +  L   +P  +   +S + +D+S+N L   + S S  + +
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDI--PSSTKNIDLSFNPLKI-LKSYSFSNFS 56

Query: 366 SIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGY 425
            ++ L LS      I                                             
Sbjct: 57  ELQWLDLSRCEIETIE-------------------------------------------- 72

Query: 426 VDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIH 485
                  +  +  H L+++ L+   +   F        T+LE L+     L      PI 
Sbjct: 73  ------DKAWHGLHHLSNLILTGNPIQS-FSPGSFSGLTSLENLVAVETKLASLESFPIG 125

Query: 486 SHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKML----ER 541
               L  L+V +NF          + L  L+ ++LS N       +    ++        
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185

Query: 542 LDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKF-NLTNLMTLQLDGNNFIG 600
           LD+S N +     +  A     L  L L  N    +I      NL  L   +L    F  
Sbjct: 186 LDMSLNPIDFIQDQ--AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243

Query: 601 EIPESLSKCYMLRGL--------YLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPI 652
           E    + +  ++ GL         L+  + F         L  +  + +   +++    +
Sbjct: 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDV 303

Query: 653 EFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDL 712
                   + L +    +    P+   P  ++ + L+ NK     + +    P L  LDL
Sbjct: 304 PKH--FKWQSLSIIRCQL-KQFPTLDLP-FLKSLTLTMNKGSISFKKV--ALPSLSYLDL 357

Query: 713 SYNSLHGSIPN--RIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIP 770
           S N+L  S            L +L L+ N     +      L+E++ +D  H+ L  R+ 
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLK-RVT 415

Query: 771 PCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQ 830
                 SL +  + +++ T+       ++                               
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLG----------------------------- 446

Query: 831 GRILTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLD 889
              LTS++ + ++ N       + +    T +  L+LS   L       F  L +++ L+
Sbjct: 447 ---LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503

Query: 890 LSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD-RAQFSTFEEDSYEGNPFLC 944
           +S+N L          L +L     ++N +       +    +    +   N   C
Sbjct: 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  159 bits (405), Expect = 4e-41
 Identities = 85/481 (17%), Positives = 159/481 (33%), Gaps = 53/481 (11%)

Query: 4   SLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSS 63
                   L+ L+++ N I  C         S LTNL  + L+ N+      + L  L  
Sbjct: 122 FPIGQLITLKKLNVAHNFIHSCKLPAY---FSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178

Query: 64  LR----HLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYL 119
                  L ++ N ++  I  +    +  L EL + GN   + ++    + L  L+   L
Sbjct: 179 NPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236

Query: 120 GGSGIPRIDGSKVLQ--SIGSLPSLKTLYLSHTKFKGTVVNQ-KLHNFTNLEELILDESD 176
                      ++ +   +  L  +       T       +  K H   N+  + L  + 
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL--AG 294

Query: 177 LHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQI 236
           + +   L+ +      + LS+  C LK        L    L+ L +   +  ++   +  
Sbjct: 295 VSIKY-LEDVPKHFKWQSLSIIRCQLK----QFPTLDLPFLKSLTLTMNKGSISFKKV-- 347

Query: 237 VGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQV 296
              ++PSL++L L+ ++L+              L+ L +  N     +      +  LQ 
Sbjct: 348 ---ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQH 403

Query: 297 LYASSNQLTGNISPG-LCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTEN 355
           L    + L           L  L  L I   + +         LTSL  L ++ N   +N
Sbjct: 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463

Query: 356 ISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKF 415
             S+   + T++  L LS     QI   +     L +LQ  N   N              
Sbjct: 464 TLSNVFANTTNLTFLDLSKCQLEQISWGV--FDTLHRLQLLNMSHN-------------- 507

Query: 416 QLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNS 475
            L  +                  + L++++ S   +       L     +L    L NNS
Sbjct: 508 NLLFLD----------SSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNS 556

Query: 476 L 476
           +
Sbjct: 557 V 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.6 bits (176), Expect = 8e-13
 Identities = 26/120 (21%), Positives = 43/120 (35%), Gaps = 5/120 (4%)

Query: 2   NASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGL 61
              +F     L +L ++ N+      +      +  TNL FL L+        +     L
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNV---FANTTNLTFLDLSKCQLEQISWGVFDTL 496

Query: 62  SSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGG 121
             L+ L+++ N L   +D    N L +L  LD + N IE           + L    L  
Sbjct: 497 HRLQLLNMSHNNLL-FLDSSHYNQLYSLSTLDCSFNRIETS-KGILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 10/126 (7%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHA----LNLSHNNLTGTIPTTFSNLKQIESLD 889
           LT++  +DLS N +       + +L         L++S N +       F  +K +  L 
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELT 210

Query: 890 LSYNLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGQPL 948
           L  N     I    +  L  L V ++       +         FE    EG   +     
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER----NLEIFEPSIMEGLCDVTIDEF 266

Query: 949 SKSCND 954
             +  +
Sbjct: 267 RLTYTN 272

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  202 bits (516), Expect = 2e-58
 Identities = 74/266 (27%), Positives = 113/266 (42%), Gaps = 6/266 (2%)

Query: 518 LNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGE--IPERMATGCFSLEILALSN-NRL 574
            +     + G +  +      +  LD+S   L     IP  +A     L  L +   N L
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNL 89

Query: 575 QGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLP 634
            G I      LT L  L +   N  G IP+ LS+   L  L  S N L G +P  + +LP
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 635 TLQYIIMPNNNLEGPIPIEFCQRDSL-KILDLSNNSIFGTLPSCFSPASIEQVHLSKNKI 693
            L  I    N + G IP  +     L   + +S N + G +P  F+  ++  V LS+N +
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML 209

Query: 694 EGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLK 753
           EG    +   + +   + L+ NSL   +   +     LN L L +N I G +P  L QLK
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 754 EVRLIDLSHNNLSGRIPPCLVNTSLN 779
            +  +++S NNL G IP        +
Sbjct: 269 FLHSLNVSFNNLCGEIPQGGNLQRFD 294

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  198 bits (505), Expect = 8e-57
 Identities = 72/367 (19%), Positives = 127/367 (34%), Gaps = 82/367 (22%)

Query: 601 EIPESLSKCYMLR----GLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEG--PIPIEF 654
           +I + L     L          +    G +         +  + +   NL    PIP   
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 655 CQRDSLKILDLSN-NSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLS 713
                L  L +   N++ G +P                    +L         L  L ++
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAI----------------AKL-------TQLHYLYIT 109

Query: 714 YNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCL 773
           + ++ G+IP+ + ++  L  L  ++N + G +P  +  L  +  I    N +SG IP   
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

Query: 774 VN-TSLNEGYH-------GEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNM 825
            + + L            G++ P +                                 N+
Sbjct: 170 GSFSKLFTSMTISRNRLTGKI-PPTFA-------------------------------NL 197

Query: 826 SYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQI 885
           +          ++ +DLS N L G+     G       ++L+ N+L   +       K +
Sbjct: 198 N----------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNL 246

Query: 886 ESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCG 945
             LDL  N ++G +P  L  L  L    V++NNL G+IP       F+  +Y  N  LCG
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306

Query: 946 QPLSKSC 952
            PL  +C
Sbjct: 307 SPL-PAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  182 bits (464), Expect = 2e-51
 Identities = 61/257 (23%), Positives = 103/257 (40%), Gaps = 12/257 (4%)

Query: 528 SIPSSFADMKML----ERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQG--HIFSE 581
            I     +   L       D  N    G + +   T  + +  L LS   L     I S 
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTD-TQTYRVNNLDLSGLNLPKPYPIPSS 71

Query: 582 KFNLTNLMTLQL-DGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYII 640
             NL  L  L +   NN +G IP +++K   L  LY++  ++ G IP +L  + TL  + 
Sbjct: 72  LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 641 MPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFS--PASIEQVHLSKNKIEGRLE 698
              N L G +P       +L  +    N I G +P  +         + +S+N++ G++ 
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

Query: 699 SIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLI 758
                N +L  +DLS N L G              + LA N +  ++  ++   K +  +
Sbjct: 192 PTF-ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGL 249

Query: 759 DLSHNNLSGRIPPCLVN 775
           DL +N + G +P  L  
Sbjct: 250 DLRNNRIYGTLPQGLTQ 266

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  180 bits (459), Expect = 1e-50
 Identities = 65/266 (24%), Positives = 115/266 (43%), Gaps = 5/266 (1%)

Query: 429 GTFPEFLYHQHDLNSVNLSHLNLSGEFP-NWLLENNTNLETLLLAN-NSLFGSFRMPIHS 486
           G   +     + +N+++LS LNL   +P    L N   L  L +   N+L G     I  
Sbjct: 40  GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99

Query: 487 HQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISN 546
             +L  L + +    G IP  +   +  L+ L+ S NA +G++P S + +  L  +    
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158

Query: 547 NQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESL 606
           N+++G IP+   +       + +S NRL G I     NL NL  + L  N   G+     
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLF 217

Query: 607 SKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLS 666
                 + ++L+ N L   + + +G    L  + + NN + G +P    Q   L  L++S
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 667 NNSIFGTLPSCFSPASIEQVHLSKNK 692
            N++ G +P   +    +    + NK
Sbjct: 277 FNNLCGEIPQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  180 bits (458), Expect = 2e-50
 Identities = 72/275 (26%), Positives = 119/275 (43%), Gaps = 12/275 (4%)

Query: 409 DSLTPKFQLTSISLSGYVDGGTF--PEFLYHQHDLNSVNLSHLN-LSGEFPNWLLENNTN 465
           D+ T  +++ ++ LSG      +  P  L +   LN + +  +N L G  P  +    T 
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQ 102

Query: 466 LETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAF 525
           L  L + + ++ G+    +   + L TLD   N   G +P  I   LP L+ +    N  
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRI 161

Query: 526 NGSIPSSFADMKMLER-LDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFN 584
           +G+IP S+     L   + IS N+LTG+IP        +L  + LS N L+G       +
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 585 LTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNN 644
             N   + L  N+   ++   +     L GL L +N ++G +P+ L  L  L  + +  N
Sbjct: 220 DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

Query: 645 NLEGPIPIEFCQRDSLKILDLSNNSIF--GTLPSC 677
           NL G IP          +   +NN       LP+C
Sbjct: 279 NLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  158 bits (403), Expect = 3e-43
 Identities = 74/313 (23%), Positives = 120/313 (38%), Gaps = 63/313 (20%)

Query: 266 QLVHLQGLYIRDNDLR--DGLPWCLANMTSLQVLY-ASSNQLTGNISPGLCELVLLRKLY 322
           Q   +  L +   +L     +P  LAN+  L  LY    N L G I P + +L  L  LY
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 323 IDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFF-QIP 381
           I + ++ G++P  L+ + +L  LD SYN L+  +  S +  L ++  +    N     IP
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIP 166

Query: 382 ISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDL 441
            S     + SKL T                                              
Sbjct: 167 DSY---GSFSKLFTS--------------------------------------------- 178

Query: 442 NSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQ 501
             + +S   L+G+ P      N NL  + L+ N L G   +   S +    + +  N   
Sbjct: 179 --MTISRNRLTGKIPPTF--ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 502 GHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGC 561
             +  ++G     L  L+L  N   G++P     +K L  L++S N L GEIP+    G 
Sbjct: 235 FDLG-KVGL-SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ---GGN 289

Query: 562 FS-LEILALSNNR 573
               ++ A +NN+
Sbjct: 290 LQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 95.7 bits (239), Expect = 2e-21
 Identities = 64/323 (19%), Positives = 107/323 (33%), Gaps = 68/323 (21%)

Query: 56  SSLGGLSSLRHLSLADNRLNGSIDI-KGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKL 114
            +      + +L L+   L     I   L +L  L  L                  +  +
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLY-----------------IGGI 86

Query: 115 NTLYLGGSG-IPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILD 173
           N L     G IP         +I  L  L  LY++HT   G + +  L     L  L   
Sbjct: 87  NNL----VGPIP--------PAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFS 133

Query: 174 ESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNL-EYLDMGWVQVDVNTN 232
            + L    L  SI+S  +L  ++     + GA+    +  F  L   + +         N
Sbjct: 134 YNALS-GTLPPSISSLPNLVGITFDGNRISGAI-PDSYGSFSKLFTSMTIS-------RN 184

Query: 233 FLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMT 292
            L   G+  P+   L+L                       + +  N L         +  
Sbjct: 185 RLT--GKIPPTFANLNLAF---------------------VDLSRNMLEGDASVLFGSDK 221

Query: 293 SLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQL 352
           + Q ++ + N L  ++   +     L  L + NN + G+LP  L  L  L  L+VS+N L
Sbjct: 222 NTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

Query: 353 TENISSSSLMHLTSIEELILSNN 375
              I      +L   +    +NN
Sbjct: 281 CGEIPQGG--NLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 91.1 bits (227), Expect = 5e-20
 Identities = 72/333 (21%), Positives = 115/333 (34%), Gaps = 77/333 (23%)

Query: 10  QQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYL-NDNHFNNSIFSSLGGLSSLRHLS 68
            ++ +LDLS  N+           L+ L  L FLY+   N+    I  ++  L+ L +L 
Sbjct: 50  YRVNNLDLSGLNLPK--PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 69  LADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGG---SG-I 124
           +    ++G+I    L+ +  L  LD + NA+    +P     L  L  +   G   SG I
Sbjct: 108 ITHTNVSGAIP-DFLSQIKTLVTLDFSYNALSG-TLPPSISSLPNLVGITFDGNRISGAI 165

Query: 125 PRIDGSKVLQSIGSLPSLKT-LYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLL 183
           P         S GS   L T + +S  +  G                           + 
Sbjct: 166 PD--------SYGSFSKLFTSMTISRNRLTGK--------------------------IP 191

Query: 184 QSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPS 243
            + A+  +L  + +   +L+G      F   KN + + +         N L      +  
Sbjct: 192 PTFANL-NLAFVDLSRNMLEGDASVL-FGSDKNTQKIHLAK-------NSLA--F-DLGK 239

Query: 244 LNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQ 303
           +                        +L GL +R+N +   LP  L  +  L  L  S N 
Sbjct: 240 VGLSK--------------------NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 304 LTGNISPGLCELVLLRKLYIDNNDLRGS-LPLC 335
           L G I  G          Y +N  L GS LP C
Sbjct: 280 LCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 312

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  210 bits (536), Expect = 1e-56
 Identities = 83/574 (14%), Positives = 172/574 (29%), Gaps = 55/574 (9%)

Query: 230 NTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLA 289
           N  +      +       +               L     + GL +     +  +P  + 
Sbjct: 285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIG 344

Query: 290 NMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSL-PLCLANLTSLRVLDVS 348
            +T L+VL   ++  T +      E +         + +R     + L     L + D+ 
Sbjct: 345 QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404

Query: 349 YNQLTENISSSSLMHLTSIE----ELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQT 404
            + +  N     +   + I     ++    N    I  +++ L  L  +   N       
Sbjct: 405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFT--- 461

Query: 405 ESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNT 464
                           +               +  DL  V L +     + P++ L +  
Sbjct: 462 -----YDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLP 515

Query: 465 NLETLLLANNSLFGSFRMP---------IHSHQKLATLDVFNNFFQGHIPVEIG-TYLPG 514
            L++L +A N    + ++            +  K+    +  N  +   P       +  
Sbjct: 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQKMVK 574

Query: 515 LMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRL 574
           L  L+   N        +F     L  L +  NQ+  EIPE        +E L  S+N+L
Sbjct: 575 LGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL 631

Query: 575 QG-HIFSEKFNLTNLMTLQLDGNNFIGEIPE-----SLSKCYMLRGLYLSDNHLFGKIPR 628
           +         ++  + ++    N    E           K      + LS N +      
Sbjct: 632 KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE 691

Query: 629 WLGNLPTLQYIIMPNNNLE-------GPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPA 681
                  +  II+ NN +         P    +     L  +DL  N +  +L   F   
Sbjct: 692 LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRAT 750

Query: 682 ---SIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSY------NSLHGSIPNRIDRLPQLN 732
               +  + +S N       +   ++  L    + +      N +    P  I   P L 
Sbjct: 751 TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809

Query: 733 YLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 766
            L +  N I+ ++  +L    ++ ++D++ N   
Sbjct: 810 QLQIGSNDIR-KVDEKL--TPQLYILDIADNPNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  208 bits (531), Expect = 6e-56
 Identities = 85/642 (13%), Positives = 185/642 (28%), Gaps = 106/642 (16%)

Query: 48  NHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKD 107
           + + +     L     +  LSLA     G +    +  L+ L+ L    ++   +     
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVP-DAIGQLTELKVLSFGTHSET-VSGRLF 366

Query: 108 FRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNL 167
                  +        I        L     L     L  +  +       +K  +  +L
Sbjct: 367 GDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD-SRISL 425

Query: 168 EELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQV 227
           ++  +      ++ + ++I   T L+ +   +                            
Sbjct: 426 KDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY----------------------- 462

Query: 228 DVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWC 287
                          ++++    +    ++   +     L  L  + + +      LP  
Sbjct: 463 ------------DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF 510

Query: 288 LANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDV 347
           L ++  LQ L  + N+                            L         +++  +
Sbjct: 511 LYDLPELQSLNIACNRGIS---------------AAQLKADWTRLADDEDTGPKIQIFYM 555

Query: 348 SYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESH 407
            YN L E  +S+SL  +  +  L   +N    +           KL     + N      
Sbjct: 556 GYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE----AFGTNVKLTDLKLDYN------ 605

Query: 408 YDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLE 467
                   Q+  I            +F      +  +  SH  L      +  ++   + 
Sbjct: 606 --------QIEEIP----------EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMG 647

Query: 468 TLLLANNSLFG-----SFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSR 522
           ++  + N +       S  M  +     +T+ +  N  Q   P E+      +  + LS 
Sbjct: 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSN 706

Query: 523 NAF-------NGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQ 575
           N               ++ +  +L  +D+  N+LT    +  AT    L  + +S N   
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS 766

Query: 576 GHIFSEKFNLTNLMTLQL------DGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRW 629
               ++  N + L    +      +GN  + + P  ++ C  L  L +  N +  K+   
Sbjct: 767 -SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK 824

Query: 630 LGNLPTLQYI-IMPNNNLEGPIPIEFCQRDSLKILDLSNNSI 670
           L   P L  + I  N N+   +    C      +  L  +  
Sbjct: 825 L--TPQLYILDIADNPNISIDVT-SVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  206 bits (525), Expect = 4e-55
 Identities = 95/653 (14%), Positives = 180/653 (27%), Gaps = 127/653 (19%)

Query: 135 SIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKH 194
            + +   +  L L+    KG V +  +   T L+ L        VS  L       +   
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDA-IGQLTELKVLSFGTHSETVSGRLFGDEEL-TPDM 375

Query: 195 LSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSL 254
              +   ++           + L   D+    ++ N     I        + +SL ++ +
Sbjct: 376 SEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI-----KKDSRISLKDTQI 430

Query: 255 NKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCE 314
              T                   N +   +   +  +T LQ++Y +++  T         
Sbjct: 431 GNLT-------------------NRIT-FISKAIQRLTKLQIIYFANSPFTY-----DNI 465

Query: 315 LVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSN 374
            V       D      +  L  +NL  L  +++        +    L  L  ++ L ++ 
Sbjct: 466 AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIAC 524

Query: 375 NHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEF 434
           N              L                                          + 
Sbjct: 525 NRGISAAQLKADWTRL-----------------------------------------ADD 543

Query: 435 LYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLD 494
                 +    + + NL     +  L+    L  L   +N              K+  L+
Sbjct: 544 EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN--------------KVRHLE 589

Query: 495 VFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIP 554
            F                  L +L L  N          A    +E L  S+N+L   IP
Sbjct: 590 AFGT-------------NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIP 635

Query: 555 ERMA-TGCFSLEILALSNNRLQGH-----IFSEKFNLTNLMTLQLDGNNFIGEIPESLSK 608
                   + +  +  S N++           + +   N  T+ L  N       E  + 
Sbjct: 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFAT 695

Query: 609 CYMLRGLYLSDNHL-------FGKIPRWLGNLPTLQYIIMPNNNLEG-PIPIEFCQRDSL 660
              +  + LS+N +                N   L  I +  N L              L
Sbjct: 696 GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYL 755

Query: 661 KILDLSNNSIFGTLPSCFSPAS-------IEQVHLSKNKIEGRLESIIHDNPHLVTLDLS 713
             +D+S N  F + P+    +S         Q     N+I  +  + I   P L+ L + 
Sbjct: 756 SNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814

Query: 714 YNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 766
            N +   +  ++   PQL  L +A N         +C   E  +  L ++   
Sbjct: 815 SNDI-RKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  199 bits (508), Expect = 5e-53
 Identities = 77/521 (14%), Positives = 166/521 (31%), Gaps = 68/521 (13%)

Query: 288 LANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDV 347
           L N   +  L  +     G +   + +L  L+ L    +    S  L      +  + + 
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 348 SYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESH 407
             +++  +     L +   +    L  +   + P  ++P+   S++   + +I   T   
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP-EMKPIKKDSRISLKDTQIGNLT--- 434

Query: 408 YDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLE 467
                   ++T I            + +     L  +  ++   +            + E
Sbjct: 435 -------NRITFI-----------SKAIQRLTKLQIIYFANSPFTY------DNIAVDWE 470

Query: 468 TLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNG 527
                    + +  +   + + L  ++++N      +P  +   LP L  LN++ N    
Sbjct: 471 DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGIS 529

Query: 528 ---------SIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHI 578
                     +         ++   +  N L              L +L   +N++    
Sbjct: 530 AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RH 587

Query: 579 FSEKFNLTNLMTLQLDGNNFIGEIPESL-SKCYMLRGLYLSDNHLFGKIPRW--LGNLPT 635
                    L  L+LD N  I EIPE   +    + GL  S N L   IP      ++  
Sbjct: 588 LEAFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYV 645

Query: 636 LQYIIMPNNNLEG-----PIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPA-SIEQVHLS 689
           +  +    N +          ++  +  +   + LS N I       F+    I  + LS
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705

Query: 690 KNKIE-------GRLESIIHDNPHLVTLDLSYNSLHGSIPNRI--DRLPQLNYLLLAHNY 740
            N +           +    +   L T+DL +N L  S+ +      LP L+ + +++N 
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC 764

Query: 741 IKGEIPVQLCQLKEVRLIDLSH------NNLSGRIPPCLVN 775
                P Q     +++   + H      N +  + P  +  
Sbjct: 765 FS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT 804

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  185 bits (470), Expect = 3e-48
 Identities = 86/568 (15%), Positives = 175/568 (30%), Gaps = 107/568 (18%)

Query: 395 TFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGE 454
            FN E++   +     L    ++T +SL+G+   G  P+ +    +L  ++    + +  
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 455 FPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPG 514
              +  E  T   +    +       +M +   Q+L   D+  +    +  +     +  
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM---KPIKK 419

Query: 515 LMELNLSRNAFNG------SIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILA 568
              ++L              I  +   +  L+ +  +N+  T +            E   
Sbjct: 420 DSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIA------VDWEDAN 473

Query: 569 LSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHL------ 622
               +   +      NL +L  ++L     + ++P+ L     L+ L ++ N        
Sbjct: 474 SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQL 533

Query: 623 ---FGKIPRWLGNLPTLQYIIMPNNNLEG-PIPIEFCQRDSLKILDLSNNSIFGTLPSCF 678
              + ++       P +Q   M  NNLE  P      +   L +LD  +N +   L +  
Sbjct: 534 KADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLEAFG 592

Query: 679 SPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAH 738
           +   +  + L  N+IE   E        +  L  S+N L   IPN               
Sbjct: 593 TNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIF------------- 638

Query: 739 NYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASV 798
                        +  +  +D S+N +                                 
Sbjct: 639 ---------NAKSVYVMGSVDFSYNKIGS------------------------------- 658

Query: 799 YRSACLPGQSSPPMGKEETVQFTTKNMSY-------YYQGRILTSMSGIDLSCNKLT--- 848
                     S  M   + +  +T  +SY              + +S I LS N +T   
Sbjct: 659 -----EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIP 713

Query: 849 ----GEIPTQIGYLTRIHALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLLHGKIPPQL 903
                           +  ++L  N LT        + L  + ++D+SYN      P Q 
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQP 772

Query: 904 IVLNTLEVFKVAY------NNLSGKIPD 925
           +  + L+ F + +      N +  + P 
Sbjct: 773 LNSSQLKAFGIRHQRDAEGNRILRQWPT 800

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  158 bits (402), Expect = 6e-40
 Identities = 56/436 (12%), Positives = 131/436 (30%), Gaps = 56/436 (12%)

Query: 6   FTPFQQLESLDLSWNNIAGCVQNESLER---------------LSRLTNLKFLYLNDNHF 50
                +L+ +  + +           E                 S L +L  + L +   
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503

Query: 51  NNSIFSSLGGLSSLRHLSLADNRLNGSIDIKG--------LNSLSNLEELDMTGNAIENL 102
              +   L  L  L+ L++A NR   +  +K          ++   ++   M  N +E  
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563

Query: 103 VVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLH 162
                 + + KL  L    + +      + L++ G+   L  L L + + +  +      
Sbjct: 564 PASASLQKMVKLGLLDCVHNKV------RHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCA 616

Query: 163 NFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKG----ALHGQDFLKFKNLE 218
               +E L    + L     + +  S   +  +      +           D  K  N  
Sbjct: 617 FTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676

Query: 219 YLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSL-----NKHTILDQGLCQLVHLQGL 273
            + + + ++     F   +  +   ++ + L+N+ +     N     D        L  +
Sbjct: 677 TVTLSYNEI---QKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI 733

Query: 274 YIRDNDLRDGLP--WCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYI------DN 325
            +R N L   L   +    +  L  +  S N  +            L+   I      + 
Sbjct: 734 DLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEG 791

Query: 326 NDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLE 385
           N +    P  +    SL  L +  N + + +          +  L +++N    I ++  
Sbjct: 792 NRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL---TPQLYILDIADNPNISIDVTSV 847

Query: 386 PLFNLSKLQTFNGEIN 401
             +  + +     +  
Sbjct: 848 CPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  121 bits (305), Expect = 3e-28
 Identities = 54/418 (12%), Positives = 116/418 (27%), Gaps = 62/418 (14%)

Query: 542 LDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGE 601
           + I   +    I +  A      E L   N R      +   +  N      + + +  +
Sbjct: 257 VPIQLKETAEYIKDYKALKAI-WEALDGKNWRYYSGTINNTIHSLN-WNFNKELDMWGDQ 314

Query: 602 IPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLK 661
               L     + GL L+     G++P  +G L  L+ +    ++      +   +  +  
Sbjct: 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPD 374

Query: 662 ILDLSNNSIFGTLPSCF--SPASIEQVHLSKNKIE-----GRLESIIHDNPHLVTLDLSY 714
           + +   + I       F      +    L ++ I        ++     +     +    
Sbjct: 375 MSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT 434

Query: 715 NSLHGSIPNRIDRLPQLNYLLLAHNYIKG-------------------EIPVQLCQLKEV 755
           N +   I   I RL +L  +  A++                          +    LK++
Sbjct: 435 NRIT-FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDL 493

Query: 756 RLIDLSHNNLSGRIPPCLVN-TSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGK 814
             ++L +     ++P  L +   L           +I C R                   
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQS--------LNIACNRGISAAQLKADWTRLADDED 545

Query: 815 EETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTG-EIPTQIGYLTRIHALNLSHNNLTG 873
                                 +    +  N L        +  + ++  L+  HN +  
Sbjct: 546 T------------------GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-- 585

Query: 874 TIPTTFSNLKQIESLDLSYNLLHGKIPPQL-IVLNTLEVFKVAYNNLSGKIPDRAQFS 930
                F    ++  L L YN +   IP       + +E    ++N L   IP+     
Sbjct: 586 RHLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAK 641

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 98.4 bits (245), Expect = 5e-21
 Identities = 37/367 (10%), Positives = 96/367 (26%), Gaps = 58/367 (15%)

Query: 610 YMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNN-NLEGPIPIEFCQRDS--------- 659
           Y +            +      ++    + ++ N    +  +PI+  +            
Sbjct: 216 YQVVAYTTYSQSGIKRSELETQSVRGESFTVIDNKLTKDANVPIQLKETAEYIKDYKALK 275

Query: 660 --LKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSL 717
              + LD  N   +    +    +     +   +    +    + +N  +  L L+    
Sbjct: 276 AIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGA 335

Query: 718 HGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTS 777
            G +P+ I +L +L  L    +       +   +     + +   + +        ++  
Sbjct: 336 KGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDY- 394

Query: 778 LNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRI---- 833
                        +             P           +++ T           I    
Sbjct: 395 ----------DQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI 444

Query: 834 --LTSMSGIDLSCNKLTG-------------------EIPTQIGYLTRIHALNLSHNNLT 872
             LT +  I  + +  T                            L  +  + L +    
Sbjct: 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504

Query: 873 GTIPTTFSNLKQIESLDLSYNLLHG---------KIPPQLIVLNTLEVFKVAYNNLSGKI 923
             +P    +L +++SL+++ N             ++         +++F + YNNL    
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-F 563

Query: 924 PDRAQFS 930
           P  A   
Sbjct: 564 PASASLQ 570

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 81.5 bits (201), Expect = 9e-16
 Identities = 31/246 (12%), Positives = 69/246 (28%), Gaps = 24/246 (9%)

Query: 709 TLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGR 768
             +   +         +D   ++  L LA    KG +P  + QL E++++    ++ +  
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 769 IPPC-------------LVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKE 815
                                 ++           +             P          
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422

Query: 816 ETVQFTTKNMSYYYQGRI------LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHN 869
            +++ T           I      LT +  I  + +  T +              N  + 
Sbjct: 423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED-----ANSDYA 477

Query: 870 NLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQF 929
                   ++SNLK +  ++L       ++P  L  L  L+   +A N        +A +
Sbjct: 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW 537

Query: 930 STFEED 935
           +   +D
Sbjct: 538 TRLADD 543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 81.5 bits (201), Expect = 9e-16
 Identities = 26/206 (12%), Positives = 70/206 (33%), Gaps = 22/206 (10%)

Query: 3   ASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFN---NSIFSSLG 59
                   Q+E L  S N +       +      +  +  +  + N       +I  S+ 
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKYIPNIFN---AKSVYVMGSVDFSYNKIGSEGRNISCSMD 668

Query: 60  G--LSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENL------VVPKDFRGL 111
                +   ++L+ N +      +   + S +  + ++ N + ++          +++  
Sbjct: 669 DYKGINASTVTLSYNEIQKFPT-ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727

Query: 112 RKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELI 171
             L T+ L  + +  +          +LP L  + +S+  F  +    +  N + L+   
Sbjct: 728 YLLTTIDLRFNKLTSLSDDF---RATTLPYLSNMDVSYNCF--SSFPTQPLNSSQLKAFG 782

Query: 172 LDE-SDLHVSQLLQSI-ASFTSLKHL 195
           +    D   +++L+      T+   L
Sbjct: 783 IRHQRDAEGNRILRQWPTGITTCPSL 808

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.3 bits (159), Expect = 8e-11
 Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 13/124 (10%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSH------NNLTGTIPTTFSNLKQIES 887
           L  +S +D+S N  +   PTQ    +++ A  + H      N +    PT  +    +  
Sbjct: 752 LPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810

Query: 888 LDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNL-SGKIPDRAQFSTFEEDS--YEGNPFLC 944
           L +  N +  K+  +L     L +  +A N   S  +     +         Y+    + 
Sbjct: 811 LQIGSNDI-RKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIR 867

Query: 945 GQPL 948
           G   
Sbjct: 868 GCDA 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.3 bits (146), Expect = 3e-09
 Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 13/112 (11%)

Query: 834 LTSMSGIDLSCNKLTGEIPT-----QIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESL 888
           +  M  +D S NK+  E                  + LS+N +       F+    I ++
Sbjct: 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI 702

Query: 889 DLSYNLL-------HGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFE 933
            LS NL+                    L    + +N L+  + D  + +T  
Sbjct: 703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLP 753

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 15/140 (10%), Positives = 38/140 (27%), Gaps = 16/140 (11%)

Query: 840 IDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 899
            +   +    +    +    R+  L+L+     G +P     L +++ L    +      
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 900 P-------PQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNP---------FL 943
                      +        ++ Y  +      R   S   +D+   NP          +
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 944 CGQPLSKSCNDNGLTTVTPE 963
             +        N +T ++  
Sbjct: 424 SLKDTQIGNLTNRITFISKA 443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.3 bits (128), Expect = 4e-07
 Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 9/104 (8%)

Query: 831 GRILTSMSGIDLSCNKLTGEIP--TQIGYLTRIHALNLSHNNLTGTIPTTFS-----NLK 883
                 + G+  S NKL   IP       +  + +++ S+N +                 
Sbjct: 615 CAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673

Query: 884 QIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA 927
              ++ LSYN +           + +    ++ N ++  IP+ +
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENS 716

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.2 bits (125), Expect = 9e-07
 Identities = 12/89 (13%), Positives = 27/89 (30%), Gaps = 3/89 (3%)

Query: 832 RILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 891
           +        D   N++  + PT I     +  L +  N++          L     LD++
Sbjct: 779 KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQL---YILDIA 835

Query: 892 YNLLHGKIPPQLIVLNTLEVFKVAYNNLS 920
            N         +       ++ + Y+   
Sbjct: 836 DNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  196 bits (500), Expect = 4e-52
 Identities = 133/610 (21%), Positives = 213/610 (34%), Gaps = 73/610 (11%)

Query: 4   SLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSI-FSSLGGLS 62
            +       E L LS+N I   V   S      L  L+ L L   +   +I   +   L 
Sbjct: 18  QVPQVLNTTERLLLSFNYIRT-VTASS---FPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73

Query: 63  SLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKD-FRGLRKLNTLYLGG 121
           +LR L L  +++   +       L +L EL +    + + V+    FR L+ L  L L  
Sbjct: 74  NLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132

Query: 122 SGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQ 181
           + I  +         G L SLK++  S  +          H    L+   L    L  + 
Sbjct: 133 NQIRSLYLHPSF---GKLNSLKSIDFSSNQIF----LVCEHELEPLQGKTLSFFSLAANS 185

Query: 182 LLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESM 241
            L S  S    K ++                +   LE LD+                 S 
Sbjct: 186 -LYSRVSVDWGKCMNP--------------FRNMVLEILDV-----------------SG 213

Query: 242 PSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANM--TSLQVLYA 299
                    N S          L    H+ G     ++++D      A +  +S++ L  
Sbjct: 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL 273

Query: 300 SSNQLTGNISPGLCE-LVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISS 358
           S   +  +++  + E L  L+ L +  N +          L +L+VL++SYN L E + S
Sbjct: 274 SHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE-LYS 331

Query: 359 SSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLT 418
           S+   L  +  + L  NH   I         L KLQT +   NA T  H+        + 
Sbjct: 332 SNFYGLPKVAYIDLQKNHIAIIQDQT--FKFLEKLQTLDLRDNALTTIHFIP-----SIP 384

Query: 419 SISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSL-F 477
            I LS    G             N ++LS   L      + L    +L+ L+L  N    
Sbjct: 385 DIFLS----GNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS 440

Query: 478 GSFRMPIHSHQKLATLDVFNNFFQG----HIPVEIGTYLPGLMELNLSRNAFNGSIPSSF 533
            S       +  L  L +  N  Q      +  ++   L  L  L L+ N  N   P  F
Sbjct: 441 CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF 500

Query: 534 ADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQL 593
           + +  L  L +++N+LT  +         +LEIL +S N+L            +L  L +
Sbjct: 501 SHLTALRGLSLNSNRLT-VLSHNDLPA--NLEILDISRNQLLAP---NPDVFVSLSVLDI 554

Query: 594 DGNNFIGEIP 603
             N FI E  
Sbjct: 555 THNKFICECE 564

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  181 bits (462), Expect = 2e-47
 Identities = 100/561 (17%), Positives = 196/561 (34%), Gaps = 54/561 (9%)

Query: 239 ESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGL-PWCLANMTSLQVL 297
           + + +   L L+ + +   T+       L  LQ L +        +      N+ +L++L
Sbjct: 21  QVLNTTERLLLSFNYIR--TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78

Query: 298 YASSNQLTGNISPG-LCELVLLRKLYIDNNDLRGSL--PLCLANLTSLRVLDVSYNQLTE 354
              S+++   + P     L  L +L +    L  ++       NL +L  LD+S NQ+  
Sbjct: 79  DLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS 137

Query: 355 NISSSSLMHLTSIEELILSNNHFFQIPI-SLEPLFNLSKLQTFN------GEINAQTESH 407
                S   L S++ +  S+N  F +    LEPL   + L  F+          +     
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT-LSFFSLAANSLYSRVSVDWGK 196

Query: 408 YDSLTPKFQLTSISLSGYVD------------GGTFPEFLYHQHDLNSVNLSHLNLSGEF 455
             +      L  + +SG                 +    L   H +        N+  + 
Sbjct: 197 CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DP 255

Query: 456 PNWLLEN--NTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLP 513
                     +++  L L++  +F        + + L  L++  N     I  E    L 
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLD 314

Query: 514 GLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNR 573
            L  LNLS N       S+F  +  +  +D+  N +   I ++       L+ L L +N 
Sbjct: 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNA 373

Query: 574 LQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFG-KIPRWLGN 632
           L     +    + ++  + L GN  +     +L+       ++LS+N L    I  +L  
Sbjct: 374 L-----TTIHFIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLENLDILYFLLR 424

Query: 633 LPTLQYIIMPNNNLEGPIPIEFCQ-RDSLKILDLSNNSIFGTLPSCFSPA------SIEQ 685
           +P LQ +I+  N        +      SL+ L L  N +     +            ++ 
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484

Query: 686 VHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEI 745
           ++L+ N +      +      L  L L+ N L   + +       L  L ++ N +    
Sbjct: 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDL-PANLEILDISRNQLLA-- 540

Query: 746 PVQLCQLKEVRLIDLSHNNLS 766
                    + ++D++HN   
Sbjct: 541 -PNPDVFVSLSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  159 bits (405), Expect = 3e-40
 Identities = 111/632 (17%), Positives = 206/632 (32%), Gaps = 72/632 (11%)

Query: 445  NLSHLNLSG----EFPNWLLENNTNLETLLLANNSLFGSF-RMPIHSHQKLATLDVFNNF 499
                L LS                 L+ L L +     +  +    +   L  LD+ ++ 
Sbjct: 25   TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84

Query: 500  FQGHIPVEIGTYLPGLMELNLSRNAFNGSI--PSSFADMKMLERLDISNNQLTGEIPERM 557
                +  +    L  L EL L     + ++     F ++K L RLD+S NQ+        
Sbjct: 85   IY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS 143

Query: 558  ATGCFSLEILALSNNRLQGHIFSEKFN---LTNLMTLQLDGNNFIGEIPESLSKCYM--- 611
                 SL+ +  S+N++   +   +        L    L  N+    +     KC     
Sbjct: 144  FGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 612  ---LRGLYLSDNHLFGKIPR------------WLGNLPTLQYIIMPNNNLEGPIPIEF-- 654
               L  L +S N     I               L     +       +N++ P    F  
Sbjct: 203  NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262

Query: 655  CQRDSLKILDLSNNSIFGTLPSCFSP-ASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLS 713
              R S++ LDLS+  +F      F     ++ ++L+ NKI    +   +   +L  L+LS
Sbjct: 263  LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322

Query: 714  YNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCL 773
            YN L     +    LP++ Y+ L  N+I          L++++ +DL  N L+  I    
Sbjct: 323  YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIHFIP 381

Query: 774  VNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRI 833
                +    +  V    I      ++ S                       ++       
Sbjct: 382  SIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441

Query: 834  --------LTSMSGIDLSCNKLTGEIPTQI-----GYLTRIHALNLSHNNLTGTIPTTFS 880
                      S+  + L  N L     T++       L+ +  L L+HN L    P  FS
Sbjct: 442  SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFS 501

Query: 881  NLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGN 940
            +L  +  L L+ N L   +     +   LE+  ++ N L    P+   F +        N
Sbjct: 502  HLTALRGLSLNSNRL--TVLSHNDLPANLEILDISRNQLL--APNPDVFVSLSVLDITHN 557

Query: 941  PFLC------------GQPLSKSCNDNGLTTVTPEA---------STENEGDSLIDTDSF 979
             F+C               ++ +     +  V P++         STE   +  +     
Sbjct: 558  KFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLK 617

Query: 980  LITFTVSYGIVIIGIIGVLYINPYWRRRWFYL 1011
               F V    + + ++ +L +  +    +   
Sbjct: 618  FSLFIVCTVTLTLFLMTILTVTKFRGFCFICY 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  153 bits (389), Expect = 3e-38
 Identities = 85/487 (17%), Positives = 161/487 (33%), Gaps = 60/487 (12%)

Query: 318 LRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHF 377
             +L +  N +R         L  L++L++        I   +  +L ++  L L ++  
Sbjct: 26  TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85

Query: 378 FQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYH 437
           + +         L  L                       L+   L           +  +
Sbjct: 86  YFLHPDA--FQGLFHLFELRLYFC--------------GLSDAVLK--------DGYFRN 121

Query: 438 QHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHS--HQKLATLDV 495
              L  ++LS   +   + +       +L+++  ++N +F      +     + L+   +
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181

Query: 496 FNNFFQGHIPVEIGTYLPG-----LMELNLSRNAFNGSIPSSFAD------------MKM 538
             N     + V+ G  +       L  L++S N +   I  +F++               
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241

Query: 539 LERLDISNNQLTGEIPERMATGCF--SLEILALSNNRLQGHIFSEKF-NLTNLMTLQLDG 595
           +       + +  +  +    G    S+  L LS+  +   + S  F  L +L  L L  
Sbjct: 242 IMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAY 299

Query: 596 NNFIGEIPE-SLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEF 654
           N  I +I + +      L+ L LS N L          LP + YI +  N++       F
Sbjct: 300 NK-INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358

Query: 655 CQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSY 714
              + L+ LDL +N++     +     SI  + LS NK    L ++   N     + LS 
Sbjct: 359 KFLEKLQTLDLRDNAL----TTIHFIPSIPDIFLSGNK----LVTLPKINLTANLIHLSE 410

Query: 715 NSLHG-SIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ-LKEVRLIDLSHNNLSGRIPPC 772
           N L    I   + R+P L  L+L  N        Q       +  + L  N L       
Sbjct: 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETE 470

Query: 773 LVNTSLN 779
           L      
Sbjct: 471 LCWDVFE 477

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  130 bits (329), Expect = 4e-31
 Identities = 87/488 (17%), Positives = 173/488 (35%), Gaps = 54/488 (11%)

Query: 1   MNASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGG 60
           +    F   + L  LDLS N I     + S     +L +LK +  + N         L  
Sbjct: 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPS---FGKLNSLKSIDFSSNQIFLVCEHELEP 170

Query: 61  LS--SLRHLSLADNRLNGSIDIKGLNSLS-----NLEELDMTGNAIENLVV--------- 104
           L   +L   SLA N L   + +     ++      LE LD++GN     +          
Sbjct: 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230

Query: 105 --PKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLH 162
                      +     G   I   D       +    S++ L LSH     ++ ++   
Sbjct: 231 SQAFSLILAHHIMGAGFGFHNIKDPD-QNTFAGLARS-SVRHLDLSHGFVF-SLNSRVFE 287

Query: 163 NFTNLEELILDESDLHVSQLLQSI-ASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLD 221
              +L+ L L  +   ++++         +L+ L++   +L   L+  +F     + Y+D
Sbjct: 288 TLKDLKVLNL--AYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYID 344

Query: 222 MGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTI------LDQGLCQLVHLQGLYI 275
           +    +           + +  L  L L +++L           +     +LV L  + +
Sbjct: 345 LQKNHI---AIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINL 401

Query: 276 RDNDLR--------DGLPWCLANMTSLQVLYASSNQLTGNISPGLCE-LVLLRKLYIDNN 326
             N +           + + L  +  LQ+L  + N+ +             L +L++  N
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461

Query: 327 DLRGSLPLCL-----ANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIP 381
            L+ +    L       L+ L+VL +++N L   +      HLT++  L L++N    + 
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS-LPPGVFSHLTALRGLSLNSNRLTVLS 520

Query: 382 ISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDL 441
            +  P  NL  L     ++ A     + SL+    +T        +  TF  +L H +  
Sbjct: 521 HNDLPA-NLEILDISRNQLLAPNPDVFVSLS-VLDITHNKFICECELSTFINWLNHTNVT 578

Query: 442 NSVNLSHL 449
            +   + +
Sbjct: 579 IAGPPADI 586

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  115 bits (289), Expect = 3e-26
 Identities = 73/402 (18%), Positives = 127/402 (31%), Gaps = 60/402 (14%)

Query: 533 FADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKF-NLTNLMTL 591
              +   ERL +S N +   +          L++L L +      I  E F NL NL  L
Sbjct: 20  PQVLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78

Query: 592 QLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKI--PRWLGNLPTLQYIIMPNNNLEG- 648
            L  +      P++    + L  L L    L   +    +  NL  L  + +  N +   
Sbjct: 79  DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138

Query: 649 PIPIEFCQRDSLKILDLSNNSIFGTLPSCFSP---ASIEQVHLSKNKIEGRLESIIH--- 702
            +   F + +SLK +D S+N IF        P    ++    L+ N +  R+        
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198

Query: 703 ---DNPHLVTLDLSYNSLHGSIP-NRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLI 758
               N  L  LD+S N     I  N  + + +     L   +      +         + 
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH-----IMGAGFGFHNIK 253

Query: 759 DLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETV 818
           D   N  +G     + +  L+ G+   +                                
Sbjct: 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET------------------------- 288

Query: 819 QFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTT 878
                          L  +  ++L+ NK+          L  +  LNLS+N L     + 
Sbjct: 289 ---------------LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333

Query: 879 FSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLS 920
           F  L ++  +DL  N +          L  L+   +  N L+
Sbjct: 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 88.7 bits (220), Expect = 5e-18
 Identities = 58/342 (16%), Positives = 111/342 (32%), Gaps = 55/342 (16%)

Query: 596 NNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFC 655
              + ++P+ L+       L LS N++          L  LQ + + +      I  E  
Sbjct: 13  FCNLTQVPQVLNT---TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69

Query: 656 QR-DSLKILDLSNNSIFGTLPSCFSP-ASIEQVHLSKNKIEGRL--ESIIHDNPHLVTLD 711
           +   +L+ILDL ++ I+   P  F     + ++ L    +   +  +    +   L  LD
Sbjct: 70  RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129

Query: 712 LSYNSLHG-SIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRL--IDLSHNNLSGR 768
           LS N +    +     +L  L  +  + N I      +L  L+   L    L+ N+L  R
Sbjct: 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR 189

Query: 769 IPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYY 828
           +                                                  F    +   
Sbjct: 190 VSVDWGKCMNP----------------------------------------FRNMVLEIL 209

Query: 829 YQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQ--IE 886
                  ++       N ++      +     I       +N+      TF+ L +  + 
Sbjct: 210 DVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVR 269

Query: 887 SLDLSYNLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRA 927
            LDLS+  +   +  ++   L  L+V  +AYN ++ KI D A
Sbjct: 270 HLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKIN-KIADEA 309

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.9 bits (127), Expect = 5e-07
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 3/101 (2%)

Query: 832 RILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTI-PTTFSNLKQIESLDL 890
           ++L +   + LS N +     +   +L ++  L L       TI    F NL  +  LDL
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 891 SYNLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRAQFS 930
             + ++  + P     L  L   ++ +  LS  +     F 
Sbjct: 81  GSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 6/88 (6%)

Query: 841 DLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 900
                 LT ++P     L     L LS N +     ++F  L+Q++ L+L        I 
Sbjct: 10  FYRFCNLT-QVPQV---LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID 65

Query: 901 PQLIV-LNTLEVFKVAYNNLSGKIPDRA 927
            +    L  L +  +  + +   +   A
Sbjct: 66  KEAFRNLPNLRILDLGSSKIY-FLHPDA 92

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  178 bits (454), Expect = 1e-47
 Identities = 101/575 (17%), Positives = 192/575 (33%), Gaps = 78/575 (13%)

Query: 9   FQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLS 68
               ++LDLS+N +   + + S         L+ L L+          +   LS L  L 
Sbjct: 27  PFSTKNLDLSFNPLRH-LGSYSF---FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 69  LADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRID 128
           L  N +  S+ +   + LS+L++L      + +L        L+ L  L +  + I    
Sbjct: 83  LTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 129 GSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELI--LDESDLHVSQLLQSI 186
             +      +L +L+ L LS  K + ++    L     +  L   LD S   ++ +    
Sbjct: 141 LPEYFS---NLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 187 ASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNF 246
                L  L++++      +          LE   +   +     N  +    ++  L  
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 247 LSLTNSSLNK----HTILDQGLCQLVHLQGLYIRDNDLRDGLPW-CLANMTSLQVLYASS 301
           L++    L         +      L ++    +    +     +        L+++    
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 316

Query: 302 NQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTE-NISSSS 360
            Q          +L  L++L   +N    +      +L SL  LD+S N L+     S S
Sbjct: 317 GQFPTL------KLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 361 LMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSI 420
               TS++ L LS N    +  +   L  L  L                           
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL--------------------------- 401

Query: 421 SLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSF 480
                                   +  H NL       +  +  NL  L +++     +F
Sbjct: 402 ------------------------DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437

Query: 481 RMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLE 540
               +    L  L +  N FQ +   +I T L  L  L+LS+       P++F  +  L+
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497

Query: 541 RLDISNNQLTGEIPERMATGCFSLEILALSNNRLQ 575
            L++++NQL   +P+ +     SL+ + L  N   
Sbjct: 498 VLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  177 bits (450), Expect = 4e-47
 Identities = 97/513 (18%), Positives = 173/513 (33%), Gaps = 27/513 (5%)

Query: 242 PSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASS 301
            S   L L+ + L    +          LQ L +   +++        +++ L  L  + 
Sbjct: 28  FSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 302 NQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSL 361
           N +          L  L+KL     +L       + +L +L+ L+V++N +         
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 362 MHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQT---ESHYDSLTPKFQLT 418
            +LT++E L LS+N    I  +   L  L ++   N  ++               + +L 
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTD--LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 203

Query: 419 SISLSGYVDGGTFPEFLY------HQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLA 472
            ++L    D     +           H L      +     +F    LE   NL      
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 473 NNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSS 532
              L       I     L  +  F+        V+  +Y  G   L L    F       
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK 323

Query: 533 FADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQ--GHIFSEKFNLTNLMT 590
               K L+RL  ++N+      E       SLE L LS N L   G      F  T+L  
Sbjct: 324 L---KSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 591 LQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRW--LGNLPTLQYIIMPNNNLEG 648
           L L  N  +  +  +      L  L    ++L  ++  +    +L  L Y+ + + +   
Sbjct: 378 LDLSFNG-VITMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 649 PIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPA--SIEQVHLSKNKIEGRLESIIHDNPH 706
                F    SL++L ++ NS              ++  + LS+ ++E    +  +    
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 707 LVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHN 739
           L  L+++ N L        DRL  L  + L  N
Sbjct: 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  158 bits (402), Expect = 7e-41
 Identities = 110/502 (21%), Positives = 180/502 (35%), Gaps = 33/502 (6%)

Query: 240 SMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYA 299
           S P L  L L+   +   TI D     L HL  L +  N ++       + ++SLQ L A
Sbjct: 50  SFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 300 SSNQLTGNISPGLCELVLLRKLYIDNNDLR-GSLPLCLANLTSLRVLDVSYNQLTENISS 358
               L    +  +  L  L++L + +N ++   LP   +NLT+L  LD+S N++   I  
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYC 166

Query: 359 SSLMHLTS----IEELILSNNHFFQIP------ISLEPLF---NLSKLQTFNGEINAQTE 405
           + L  L         L LS N    I       I L  L    N   L      I     
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAG 226

Query: 406 SHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTN 465
                L         +L    D             +    L++L+   +    L    TN
Sbjct: 227 LEVHRLVLGEFRNEGNLE-KFDKSALEGL--CNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283

Query: 466 LETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAF 525
           + +  L + ++          +     L++ N  F     ++    L  L  L  + N  
Sbjct: 284 VSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCKFGQFPTLK----LKSLKRLTFTSN-- 335

Query: 526 NGSIPSSFADMKMLERLDISNNQLTG-EIPERMATGCFSLEILALSNNRLQGHIFSEKFN 584
            G    S  D+  LE LD+S N L+      +   G  SL+ L LS N +   + S    
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLG 394

Query: 585 LTNLMTLQLDGNNFIGEIPES-LSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPN 643
           L  L  L    +N       S       L  L +S  H           L +L+ + M  
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 644 NNLEGPIPIE-FCQRDSLKILDLSNNSIFGTLPSCFSPA-SIEQVHLSKNKIEGRLESII 701
           N+ +     + F +  +L  LDLS   +    P+ F+   S++ ++++ N+++   + I 
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514

Query: 702 HDNPHLVTLDLSYNSLHGSIPN 723
                L  + L  N    S P 
Sbjct: 515 DRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  157 bits (399), Expect = 2e-40
 Identities = 90/501 (17%), Positives = 168/501 (33%), Gaps = 62/501 (12%)

Query: 292 TSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQ 351
            S + L  S N L    S        L+ L +   +++        +L+ L  L ++ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 352 LTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSL 411
           +   ++  +   L+S+++L+    +   +     P+ +L  L+  N   N          
Sbjct: 88  IQS-LALGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHN---------- 134

Query: 412 TPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSG----EFPNWLLENNTNLE 467
                + S  L  Y    T              NL HL+LS           L     + 
Sbjct: 135 ----LIQSFKLPEYFSNLT--------------NLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 468 ----TLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRN 523
               +L L+ N +    +       +L  L + NNF   ++       L GL    L   
Sbjct: 177 LLNLSLDLSLNPM-NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 524 AFNGSIPSSFADMKMLERL--------DISNNQLTGEIPERMATGCFSLEILALSNNRLQ 575
            F         D   LE L         ++      +    +     ++   +L +  ++
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 576 GHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPT 635
                +         L+L    F       L     L+ L  + N           +LP+
Sbjct: 296 R--VKDFSYNFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNKGGNAFS--EVDLPS 348

Query: 636 LQYIIMPNNNLE--GPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPA-SIEQVHLSKNK 692
           L+++ +  N L   G          SLK LDLS N +  T+ S F     +E +    + 
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN 407

Query: 693 IEGRLESIIHDN-PHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQ-LC 750
           ++   E  +  +  +L+ LD+S+     +     + L  L  L +A N  +         
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 751 QLKEVRLIDLSHNNLSGRIPP 771
           +L+ +  +DLS   L  ++ P
Sbjct: 468 ELRNLTFLDLSQCQLE-QLSP 487

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  157 bits (398), Expect = 2e-40
 Identities = 89/557 (15%), Positives = 170/557 (30%), Gaps = 111/557 (19%)

Query: 6   FTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLR 65
           +     L +L L+ N I    Q+ +L   S L++L+ L   + +  +     +G L +L+
Sbjct: 72  YQSLSHLSTLILTGNPI----QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 66  HLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKL----NTLYLGG 121
            L++A N +      +  ++L+NLE LD++ N I+++    D R L ++     +L L  
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSLDLSL 186

Query: 122 SGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQ 181
           + +  I              L  L L +      V+   +     LE   L   +     
Sbjct: 187 NPMNFIQ-----PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 182 LLQSIASFT-------SLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFL 234
            L+             +++   +             F    N+    +  V ++   +F 
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301

Query: 235 QIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSL 294
                       L L N    +   L     +L  L+ L    N   +       ++ SL
Sbjct: 302 Y-----NFGWQHLELVNCKFGQFPTL-----KLKSLKRLTFTSNKGGNAFS--EVDLPSL 349

Query: 295 QVLYASSNQLT--GNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQL 352
           + L  S N L+  G  S        L+ L +  N +  ++      L  L  LD  ++ L
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL 408

Query: 353 TENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLT 412
            +    S  + L ++  L +S+ H       +     LS L+                  
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI--FNGLSSLEVL---------------- 450

Query: 413 PKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLA 472
                                            ++  +    F   +     NL  L L+
Sbjct: 451 --------------------------------KMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 473 NNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSS 532
              L                           +       L  L  LN++ N         
Sbjct: 479 QCQL-------------------------EQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513

Query: 533 FADMKMLERLDISNNQL 549
           F  +  L+++ +  N  
Sbjct: 514 FDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  147 bits (374), Expect = 2e-37
 Identities = 79/422 (18%), Positives = 147/422 (34%), Gaps = 37/422 (8%)

Query: 1   MNASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNN-SIFSSLG 59
           +    F+    L+ L     N+     +     +  L  LK L +  N   +  +     
Sbjct: 91  LALGAFSGLSSLQKLVAVETNL----ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 60  GLSSLRHLSLADNRLNG--SIDIKGLNSLSNLE-ELDMTGNAIENLVVPKDFRGLRKLNT 116
            L++L HL L+ N++      D++ L+ +  L   LD++ N +  +  P  F+ +R L+ 
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPGAFKEIR-LHK 204

Query: 117 LYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKG-----TVVNQKLHNFTNLEELI 171
           L L  +       + +   I  L  L+   L   +F+            L    NL    
Sbjct: 205 LTLRNN---FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 172 LDES--DLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQV-- 227
              +  D ++  ++      T++   S+    ++          +++LE ++  + Q   
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 321

Query: 228 ---------DVNTNFLQ--IVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIR 276
                       +N          +PSL FL L+ + L+      Q       L+ L + 
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 277 DNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPG-LCELVLLRKLYIDNNDLRGSLPLC 335
            N +   +      +  L+ L    + L           L  L  L I +   R +    
Sbjct: 382 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

Query: 336 LANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQT 395
              L+SL VL ++ N   EN        L ++  L LS     Q+        +LS LQ 
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS--PTAFNSLSSLQV 498

Query: 396 FN 397
            N
Sbjct: 499 LN 500

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  134 bits (340), Expect = 5e-33
 Identities = 77/428 (17%), Positives = 147/428 (34%), Gaps = 41/428 (9%)

Query: 513 PGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNN 572
                L+LS N        SF     L+ LD+S  ++   I +        L  L L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 573 RLQGHIFSEKF-NLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHL-FGKIPRWL 630
            +Q  +    F  L++L  L     N        +     L+ L ++ N +   K+P + 
Sbjct: 87  PIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 631 GNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKI----LDLSNNSIFGTLPSCFSPASIEQV 686
            NL  L+++ + +N ++     +      + +    LDLS N +    P  F    + ++
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205

Query: 687 HLSKNKIEGRL-ESIIHDNPHLVTLDL------SYNSLHGSIPNRIDRLPQLNYLLLAHN 739
            L  N     + ++ I     L    L      +  +L     + ++ L  L        
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 740 YIKG---EIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRA 796
           Y+     +I      L  V    L    +  R+     N                     
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLE-------------- 310

Query: 797 SVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLT--GEIPTQ 854
               +       +  +   + + FT+      +    L S+  +DLS N L+  G     
Sbjct: 311 --LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 855 IGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQ--LIVLNTLEVF 912
               T +  L+LS N +  T+ + F  L+Q+E LD  ++ L  ++      + L  L   
Sbjct: 369 DFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYL 426

Query: 913 KVAYNNLS 920
            +++ +  
Sbjct: 427 DISHTHTR 434

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  124 bits (313), Expect = 1e-29
 Identities = 79/499 (15%), Positives = 146/499 (29%), Gaps = 45/499 (9%)

Query: 442 NSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQ 501
            +     LN   + P+ L     + + L L+ N L         S  +L  LD+     Q
Sbjct: 10  ITYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 502 GHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGC 561
             I       L  L  L L+ N        +F+ +  L++L      L   +        
Sbjct: 66  -TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHL 123

Query: 562 FSLEILALSNNRLQGHIFSEKF-NLTNLMTLQLDGNNFIGEIPESLSKCYMLRG----LY 616
            +L+ L +++N +Q     E F NLTNL  L L  N         L   + +      L 
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 617 LSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQR-DSLKILDLSNNSIFGTLP 675
           LS N +   I         L  + + NN     +     Q    L++  L          
Sbjct: 184 LSLNPM-NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF----- 237

Query: 676 SCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGS---IPNRIDRLPQLN 732
                        ++  +E   +S +    +L   +     L      I +  + L  ++
Sbjct: 238 ------------RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285

Query: 733 YLLLAHNYIKGEIPVQ-LCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSI 791
              L    I+           + + L++             L   +      G  A + +
Sbjct: 286 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT-SNKGGNAFSEV 344

Query: 792 WCRRASV-------YRSACLPGQSSPPMGKEETVQFTTKNMSYYYQG-RILTSMSGIDLS 843
                                 QS       + +  +   +         L  +  +D  
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 404

Query: 844 CNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQ 902
            + L       +   L  +  L++SH +        F+ L  +E L ++ N       P 
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

Query: 903 LIV-LNTLEVFKVAYNNLS 920
           +   L  L    ++   L 
Sbjct: 465 IFTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.0 bits (195), Expect = 3e-15
 Identities = 37/146 (25%), Positives = 56/146 (38%), Gaps = 8/146 (5%)

Query: 4   SLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSS 63
           S F   +QLE LD   +N+              L NL +L ++  H   +      GLSS
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQM---SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 64  LRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSG 123
           L  L +A N    +        L NL  LD++   +E L  P  F  L  L  L +  + 
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL-SPTAFNSLSSLQVLNMASNQ 505

Query: 124 IPRIDGSKVLQSIGSLPSLKTLYLSH 149
           +  +           L SL+ ++L  
Sbjct: 506 LKSVPDG----IFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 69.0 bits (169), Expect = 4e-12
 Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 9/122 (7%)

Query: 2   NASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFS-SLGG 60
             S+F   + L  LD+S  +     +       + L++L+ L +  N F  +        
Sbjct: 413 EFSVFLSLRNLIYLDISHTHT----RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 61  LSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKD-FRGLRKLNTLYL 119
           L +L  L L+  +L   +     NSLS+L+ L+M  N ++++  P   F  L  L  ++L
Sbjct: 469 LRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSV--PDGIFDRLTSLQKIWL 525

Query: 120 GG 121
             
Sbjct: 526 HT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.8 bits (153), Expect = 3e-10
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 4/96 (4%)

Query: 2   NASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGL 61
              +F     LE L ++ N+       +     + L NL FL L+         ++   L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 62  SSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGN 97
           SSL+ L++A N+L  S+     + L++L+++ +  N
Sbjct: 494 SSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.5 bits (121), Expect = 3e-06
 Identities = 17/93 (18%), Positives = 32/93 (34%)

Query: 833 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 892
           +  S   +DLS N L             +  L+LS   +       + +L  + +L L+ 
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 893 NLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD 925
           N +          L++L+       NL+     
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.5 bits (108), Expect = 8e-05
 Identities = 16/63 (25%), Positives = 28/63 (44%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
           L +++ +DLS  +L    PT    L+ +  LN++ N L       F  L  ++ + L  N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

Query: 894 LLH 896
              
Sbjct: 529 PWD 531

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  166 bits (422), Expect = 1e-43
 Identities = 111/570 (19%), Positives = 195/570 (34%), Gaps = 87/570 (15%)

Query: 9   FQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLS 68
              ++SLDLS+N I   + +     L    NL+ L L  +  N     +   L SL HL 
Sbjct: 25  TAAMKSLDLSFNKITY-IGHGD---LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80

Query: 69  LADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGS-GIPRI 127
           L+DN L+ S+       LS+L+ L++ GN  + L V   F  L  L TL +G       I
Sbjct: 81  LSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139

Query: 128 DGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIA 187
                      L SL  L +     +    +Q L +  ++  L L  S+      +    
Sbjct: 140 RRI----DFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEI-FAD 193

Query: 188 SFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFL 247
             +S+++L ++D  L            +    +        +      +  ES   L  L
Sbjct: 194 ILSSVRYLELRDTNLAR-FQFSPLPVDEVSSPMK------KLAFRGSVLTDESFNELLKL 246

Query: 248 SLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGN 307
                 L++    D                ++             +++ L+     L  +
Sbjct: 247 LRYILELSEVEFDD-----CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301

Query: 308 ISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENI--SSSSLMHLT 365
           +S     L  ++++ ++N+ +         +L SL  LD+S N + E    +S+      
Sbjct: 302 LSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361

Query: 366 SIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGY 425
           S++ L+LS NH   +  + E L  L  L + +                     +      
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD-----------------ISRNTFH---- 400

Query: 426 VDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIH 485
                 P+       +  +NLS   +       +      LE L ++NN+L         
Sbjct: 401 ----PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP---QTLEVLDVSNNNL--------- 443

Query: 486 SHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDIS 545
                                    +LP L EL +SRN       +S     +L  + IS
Sbjct: 444 --------------------DSFSLFLPRLQELYISRNKLKTLPDASL--FPVLLVMKIS 481

Query: 546 NNQLTGEIPERMATGCFSLEILALSNNRLQ 575
            NQL   +P+ +     SL+ + L  N   
Sbjct: 482 RNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  160 bits (406), Expect = 1e-41
 Identities = 96/525 (18%), Positives = 173/525 (32%), Gaps = 47/525 (8%)

Query: 214 FKNLEYLDMGWVQVDVNTNFLQIVGES----MPSLNFLSLTNSSLNKHTILDQGLCQ-LV 268
              ++ LD+       + N +  +G        +L  L L +   ++   ++      L 
Sbjct: 25  TAAMKSLDL-------SFNKITYIGHGDLRACANLQVLILKS---SRINTIEGDAFYSLG 74

Query: 269 HLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCE-LVLLRKLYIDNND 327
            L+ L + DN L          ++SL+ L    N         L   L  L+ L I N +
Sbjct: 75  SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134

Query: 328 LRGSLP-LCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEP 386
               +  +  A LTSL  L++    L     S SL  +  I  L L  +    +      
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKALSLRN-YQSQSLKSIRDIHHLTLHLSESAFLLEIF-- 191

Query: 387 LFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNL 446
              LS ++             +  L      + +    +       E       L    L
Sbjct: 192 ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251

Query: 447 SHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPV 506
               +         ++ T         +       +       +  L +   +   +   
Sbjct: 252 ELSEVE-------FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLS 303

Query: 507 EIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMA--TGCFSL 564
            + + L  +  + +  +       S    +K LE LD+S N +  E  +  A      SL
Sbjct: 304 TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363

Query: 565 EILALSNNRLQ-----GHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSD 619
           + L LS N L+     G I      L NL +L +  N     +P+S      +R L LS 
Sbjct: 364 QTLVLSQNHLRSMQKTGEILL---TLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSS 419

Query: 620 NHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFS 679
             +   +        TL+ + + NNNL+    +       L+ L +S N +  TLP    
Sbjct: 420 TGI-RVVKT--CIPQTLEVLDVSNNNLDS-FSLFL---PRLQELYISRNKL-KTLPDASL 471

Query: 680 PASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNR 724
              +  + +S+N+++   + I      L  + L  N    S P  
Sbjct: 472 FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 516

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  147 bits (373), Expect = 3e-37
 Identities = 78/465 (16%), Positives = 168/465 (36%), Gaps = 47/465 (10%)

Query: 318 LRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHF 377
           ++ L +  N +       L    +L+VL +  +++   I   +   L S+E L LS+NH 
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHL 86

Query: 378 FQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYH 437
             +         LS L+  N   N                 ++ ++             +
Sbjct: 87  SSLS--SSWFGPLSSLKYLNLMGN--------------PYQTLGVTS---------LFPN 121

Query: 438 QHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFN 497
             +L ++ + ++    E         T+L  L +   SL       + S + +  L +  
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 498 NFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERM 557
           +     +       L  +  L L          S     ++   +     + +  + +  
Sbjct: 182 SESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS-VLTDES 239

Query: 558 ATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYL 617
                 L    L  + ++     +   L  L       ++ + E+     +   +R L++
Sbjct: 240 FNELLKLLRYILELSEVE----FDDCTLNGLGDFNPSESDVVSEL--GKVETVTIRRLHI 293

Query: 618 SDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQR-DSLKILDLSNNSI----FG 672
              +LF  +      L  ++ I + N+ +   +P  F Q   SL+ LDLS N +      
Sbjct: 294 PQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLK 352

Query: 673 TLPSCFSPASIEQVHLSKNKIE--GRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQ 730
                 +  S++ + LS+N +    +   I+    +L +LD+S N+ H  +P+      +
Sbjct: 353 NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEK 411

Query: 731 LNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVN 775
           + +L L+   I+    V+ C  + + ++D+S+NNL       L  
Sbjct: 412 MRFLNLSSTGIRV---VKTCIPQTLEVLDVSNNNLD-SFSLFLPR 452

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  147 bits (373), Expect = 3e-37
 Identities = 88/530 (16%), Positives = 171/530 (32%), Gaps = 53/530 (10%)

Query: 242 PSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASS 301
            +       + S    T +  GL     ++ L +  N +       L    +LQVL   S
Sbjct: 5   DASGVCDGRSRSF---TSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 302 NQLTGNISPGLCE-LVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSS 360
           +++   I       L  L  L + +N L          L+SL+ L++  N       +S 
Sbjct: 60  SRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 361 LMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSI 420
             +LT+++ L + N   F   I       L+ L     +  +       SL     +  +
Sbjct: 119 FPNLTNLQTLRIGNVETFSE-IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177

Query: 421 SLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSF 480
           +L           F      +  + L   NL+  F    L  +     +           
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLT 236

Query: 481 RMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLE 540
               +   KL    +  +  +                 + + +  +        +   + 
Sbjct: 237 DESFNELLKLLRYILELSEVEFDD-------CTLNGLGDFNPSESDVVSELGKVETVTIR 289

Query: 541 RLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKF-NLTNLMTLQLDGNNFI 599
           RL I    L       + +    ++ + + N+++   +      +L +L  L L  N  +
Sbjct: 290 RLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMV 347

Query: 600 GEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLE--GPIPIEFCQR 657
            E  ++                         G  P+LQ +++  N+L             
Sbjct: 348 EEYLKN---------------------SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386

Query: 658 DSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNP-HLVTLDLSYNS 716
            +L  LD+S N+      SC  P  +  ++LS       +  +    P  L  LD+S N+
Sbjct: 387 KNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST----GIRVVKTCIPQTLEVLDVSNNN 442

Query: 717 LHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 766
           L  S       LP+L  L ++ N +K  +P        + ++ +S N L 
Sbjct: 443 L-DSFSLF---LPRLQELYISRNKLK-TLP-DASLFPVLLVMKISRNQLK 486

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  127 bits (321), Expect = 9e-31
 Identities = 70/439 (15%), Positives = 139/439 (31%), Gaps = 51/439 (11%)

Query: 338 NLTSLRVLDVSYNQLTE---NISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQ 394
           +  +  V D      T     ++        +++ L LS N    I      L   + LQ
Sbjct: 3   SCDASGVCDGRSRSFTSIPSGLT-------AAMKSLDLSFNKITYIGHG--DLRACANLQ 53

Query: 395 TFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGE 454
               + +              ++ +I      +G  F    Y    L  ++LS  +LS  
Sbjct: 54  VLILKSS--------------RINTI------EGDAF----YSLGSLEHLDLSDNHLS-S 88

Query: 455 FPNWLLENNTNLETLLLANNSLFG-SFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLP 513
             +      ++L+ L L  N            +   L TL + N      I       L 
Sbjct: 89  LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148

Query: 514 GLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNR 573
            L EL +   +       S   ++ +  L +  ++    + E  A    S+  L L +  
Sbjct: 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTN 207

Query: 574 LQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNL 633
           L    FS          ++           ES ++   L    L  + +         + 
Sbjct: 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV------EFDDC 261

Query: 634 PTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSP-ASIEQVHLSKNK 692
                     +  +    +   +  +++ L +    +F  L + +S    ++++ +  +K
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321

Query: 693 IEGRLESIIHDNPHLVTLDLSYN---SLHGSIPNRIDRLPQLNYLLLAHNYIK--GEIPV 747
           +     S       L  LDLS N     +          P L  L+L+ N+++   +   
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381

Query: 748 QLCQLKEVRLIDLSHNNLS 766
            L  LK +  +D+S N   
Sbjct: 382 ILLTLKNLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  126 bits (318), Expect = 2e-30
 Identities = 67/429 (15%), Positives = 135/429 (31%), Gaps = 41/429 (9%)

Query: 1   MNASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGG 60
              SLF     L++L +        ++       + LT+L  L +      N    SL  
Sbjct: 114 GVTSLFPNLTNLQTLRIGNVETFSEIRRID---FAGLTSLNELEIKALSLRNYQSQSLKS 170

Query: 61  LSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENL--VVPKDFRGLRKLNTLY 118
           +  + HL+L  +     +     + LS++  L++    +                +  L 
Sbjct: 171 IRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229

Query: 119 LGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLH 178
             GS +     +++L+ +  +  L  +            N       +  +++ +   + 
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTL-----NGLGDFNPSESDVVSELGKVE 284

Query: 179 VSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVG 238
                       +++ L +    L   L    +   + ++ + +   +V           
Sbjct: 285 ----------TVTIRRLHIPQFYLFYDLSTV-YSLLEKVKRITVENSKV---FLVPCSFS 330

Query: 239 ESMPSLNFLSLTNSSLNKHTILDQGLC-QLVHLQGLYIRDNDLRD--GLPWCLANMTSLQ 295
           + + SL FL L+ + + +  + +         LQ L +  N LR        L  + +L 
Sbjct: 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390

Query: 296 VLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTEN 355
            L  S N     +         +R L + +  +R  +  C+    +L VLDVS N L   
Sbjct: 391 SLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSF 446

Query: 356 ISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKF 415
                   L  ++EL +S N    +P           L       N              
Sbjct: 447 SL-----FLPRLQELYISRNKLKTLP----DASLFPVLLVMKISRNQLKSVPDGIFDRLT 497

Query: 416 QLTSISLSG 424
            L  I L  
Sbjct: 498 SLQKIWLHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  119 bits (301), Expect = 3e-28
 Identities = 68/487 (13%), Positives = 149/487 (30%), Gaps = 56/487 (11%)

Query: 441 LNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFF 500
               +    + +   P+ L      +++L L+ N +       + +   L  L + ++  
Sbjct: 7   SGVCDGRSRSFT-SIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62

Query: 501 QGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATG 560
              I  +    L  L  L+LS N  +    S F  +  L+ L++  N         +   
Sbjct: 63  N-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 561 CFSLEILALSNNRLQGHIFSEKF-NLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSD 619
             +L+ L + N      I    F  LT+L  L++   +      +SL     +  L L  
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 620 NHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFS 679
           +     +  +   L +++Y+ + + NL           +    +            S  +
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG-----SVLT 236

Query: 680 PASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHN 739
             S  ++      I    E    D       D + +               +  L +   
Sbjct: 237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF 296

Query: 740 YIKGEIPVQLC---QLKEVRLIDLSHNNLSGRIPPCLVN-TSLNEGYHGEVAPTSIWCRR 795
           Y+  ++        ++K + + +     +       L +   L+   +            
Sbjct: 297 YLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN------------ 344

Query: 796 ASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLT--GEIPT 853
                                      + +          S+  + LS N L    +   
Sbjct: 345 -----------------------LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381

Query: 854 QIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFK 913
            +  L  + +L++S N     +P +    +++  L+LS   +   +   +    TLEV  
Sbjct: 382 ILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLD 437

Query: 914 VAYNNLS 920
           V+ NNL 
Sbjct: 438 VSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.9 bits (161), Expect = 4e-11
 Identities = 38/238 (15%), Positives = 78/238 (32%), Gaps = 34/238 (14%)

Query: 658 DSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSL 717
           D+  + D  + S F ++PS    A+++ + LS NKI       +    +L  L L  + +
Sbjct: 5   DASGVCDGRSRS-FTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62

Query: 718 HGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTS 777
           +    +    L  L +L L+ N++          L  ++ ++L  N     +    +  +
Sbjct: 63  NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPN 121

Query: 778 LNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSM 837
           L               R  +V   + +                             LTS+
Sbjct: 122 L---------TNLQTLRIGNVETFSEIRRIDFAG----------------------LTSL 150

Query: 838 SGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 895
           + +++    L       +  +  IH L L  +     +      L  +  L+L    L
Sbjct: 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 3/99 (3%)

Query: 833 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 892
           +  +M  +DLS NK+T      +     +  L L  + +       F +L  +E LDLS 
Sbjct: 24  LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83

Query: 893 NLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRAQFS 930
           N L   +       L++L+   +  N     +   + F 
Sbjct: 84  NHLS-SLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFP 120

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 6e-05
 Identities = 14/89 (15%), Positives = 36/89 (40%), Gaps = 1/89 (1%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQ-IGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 892
           LT++  + +   +   EI       LT ++ L +   +L      +  +++ I  L L  
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 893 NLLHGKIPPQLIVLNTLEVFKVAYNNLSG 921
           +     +     +L+++   ++   NL+ 
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLAR 210

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  153 bits (390), Expect = 5e-41
 Identities = 86/386 (22%), Positives = 160/386 (41%), Gaps = 48/386 (12%)

Query: 12  LESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLAD 71
             +L      I        +   + L       L      + +  +   L S+  L +A 
Sbjct: 2   AATLATLPAPI------NQIFPDADLAEGIRAVLQKASVTDVV--TQEELESITKLVVAG 53

Query: 72  NRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSK 131
            ++     I+G+  L+NLE L++ GN I ++        L KL  LY+G + I       
Sbjct: 54  EKVA---SIQGIEYLTNLEYLNLNGNQITDI---SPLSNLVKLTNLYIGTNKI------T 101

Query: 132 VLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTS 191
            + ++ +L +L+ LYL+            L N T +  L L  +       L  +++ T 
Sbjct: 102 DISALQNLTNLRELYLNEDNISDI---SPLANLTKMYSLNLGANHN--LSDLSPLSNMTG 156

Query: 192 LKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTN 251
           L +L++ +  +K            +L  L + + Q++  +        S+ SL++ +   
Sbjct: 157 LNYLTVTESKVKDV---TPIANLTDLYSLSLNYNQIEDISPL-----ASLTSLHYFTAYV 208

Query: 252 SSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPG 311
              N+ T +   +  +  L  L I +N + D  P  LAN++ L  L   +NQ++      
Sbjct: 209 ---NQITDIT-PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INA 260

Query: 312 LCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELI 371
           + +L  L+ L + +N +       L NL+ L  L ++ NQL  N     +  LT++  L 
Sbjct: 261 VKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLG-NEDMEVIGGLTNLTTLF 317

Query: 372 LSNNHFFQIPISLEPLFNLSKLQTFN 397
           LS NH       + PL +LSK+ + +
Sbjct: 318 LSQNHI----TDIRPLASLSKMDSAD 339

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  144 bits (367), Expect = 5e-38
 Identities = 79/368 (21%), Positives = 142/368 (38%), Gaps = 44/368 (11%)

Query: 9   FQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLS 68
             +     L   ++        +     L ++  L +      +     +  L++L +L+
Sbjct: 21  LAEGIRAVLQKASV------TDVVTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLN 72

Query: 69  LADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRID 128
           L  N++    DI  L++L  L  L +  N I ++      + L  L  LYL    I    
Sbjct: 73  LNGNQIT---DISPLSNLVKLTNLYIGTNKITDI---SALQNLTNLRELYLNEDNI---- 122

Query: 129 GSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIAS 188
               +  + +L  + +L L        +    L N T L  L + ES +   + +  IA+
Sbjct: 123 --SDISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKV---KDVTPIAN 175

Query: 189 FTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLS 248
            T L  LS+    ++            +L Y      Q+   T        +M  LN L 
Sbjct: 176 LTDLYSLSLNYNQIEDI---SPLASLTSLHYFTAYVNQITDITPV-----ANMTRLNSLK 227

Query: 249 LTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNI 308
           + N+ +   +     L  L  L  L I  N + D +   + ++T L++L   SNQ++ +I
Sbjct: 228 IGNNKITDLS----PLANLSQLTWLEIGTNQISD-IN-AVKDLTKLKMLNVGSNQIS-DI 280

Query: 309 SPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIE 368
           S  L  L  L  L+++NN L       +  LT+L  L +S N +T       L  L+ ++
Sbjct: 281 SV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT---DIRPLASLSKMD 336

Query: 369 ELILSNNH 376
               +N  
Sbjct: 337 SADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  141 bits (359), Expect = 6e-37
 Identities = 72/351 (20%), Positives = 142/351 (40%), Gaps = 45/351 (12%)

Query: 6   FTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLR 65
               + +  L ++   +       S++ +  LTNL++L LN N   +   S L  L  L 
Sbjct: 40  QEELESITKLVVAGEKV------ASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLT 91

Query: 66  HLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIP 125
           +L +  N++    DI  L +L+NL EL +  + I ++        L K+ +L LG +   
Sbjct: 92  NLYIGTNKIT---DISALQNLTNLRELYLNEDNISDI---SPLANLTKMYSLNLGANHN- 144

Query: 126 RIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQS 185
                  L  + ++  L  L ++ +K K       + N T+L  L L+ + +     +  
Sbjct: 145 ----LSDLSPLSNMTGLNYLTVTESKVKDV---TPIANLTDLYSLSLNYNQIED---ISP 194

Query: 186 IASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVG--ESMPS 243
           +AS TSL + +     +              L  L        +  N +  +    ++  
Sbjct: 195 LASLTSLHYFTAYVNQITDI---TPVANMTRLNSLK-------IGNNKITDLSPLANLSQ 244

Query: 244 LNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQ 303
           L +L +     N+ + ++  +  L  L+ L +  N + D     L N++ L  L+ ++NQ
Sbjct: 245 LTWLEIGT---NQISDIN-AVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQ 298

Query: 304 LTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTE 354
           L       +  L  L  L++  N +    PL  A+L+ +   D +   + +
Sbjct: 299 LGNEDMEVIGGLTNLTTLFLSQNHITDIRPL--ASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  136 bits (346), Expect = 3e-35
 Identities = 79/401 (19%), Positives = 138/401 (34%), Gaps = 57/401 (14%)

Query: 270 LQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLR 329
              L      +    P   A++            +T        EL  + KL +    + 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA 57

Query: 330 GSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFN 389
            S+   +  LT+L  L+++ NQ+T     S L +L  +  L +  N        +  L N
Sbjct: 58  -SIQ-GIEYLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTNKI----TDISALQN 108

Query: 390 LSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHL 449
           L+ L+      +               ++ IS             L +   + S+NL   
Sbjct: 109 LTNLRELYLNED--------------NISDIS------------PLANLTKMYSLNLGAN 142

Query: 450 NLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIG 509
           +   +     L N T L  L +  + +      PI +   L +L +  N  +   P+   
Sbjct: 143 HNLSDLSP--LSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQIEDISPLA-- 196

Query: 510 TYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILAL 569
             L  L       N      P   A+M  L  L I NN++T   P         L  L +
Sbjct: 197 -SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPL---ANLSQLTWLEI 250

Query: 570 SNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRW 629
             N++     +   +LT L  L +  N  I +I   L+    L  L+L++N L  +    
Sbjct: 251 GTNQISD--INAVKDLTKLKMLNVGSNQ-ISDIS-VLNNLSQLNSLFLNNNQLGNEDMEV 306

Query: 630 LGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSI 670
           +G L  L  + +  N++    P+       +   D +N  I
Sbjct: 307 IGGLTNLTTLFLSQNHITDIRPLASLS--KMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  131 bits (331), Expect = 2e-33
 Identities = 79/434 (18%), Positives = 151/434 (34%), Gaps = 89/434 (20%)

Query: 142 LKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCV 201
             TL                 +       +L ++ +     + +     S+  L +    
Sbjct: 2   AATLATLPAPINQI---FPDADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEK 55

Query: 202 LKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILD 261
           +      Q      NLEYL++   Q+   +        ++  L  L +     NK T + 
Sbjct: 56  VASI---QGIEYLTNLEYLNLNGNQITDISPL-----SNLVKLTNLYIGT---NKITDIS 104

Query: 262 QGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKL 321
             L  L +L+ LY+ ++++ D  P  LAN+T +  L   +N    ++SP L  +  L  L
Sbjct: 105 -ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYL 160

Query: 322 YIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIP 381
            +  + ++   P+  ANLT L  L ++YNQ+      S L  LTS+       N      
Sbjct: 161 TVTESKVKDVTPI--ANLTDLYSLSLNYNQIE---DISPLASLTSLHYFTAYVNQI---- 211

Query: 382 ISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDL 441
             + P+ N+++L +     N              ++T +S             L +   L
Sbjct: 212 TDITPVANMTRLNSLKIGNN--------------KITDLS------------PLANLSQL 245

Query: 442 NSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQ 501
             + +    +S       +++ T L+ L + +N              +++ + V NN   
Sbjct: 246 TWLEIGTNQISDINA---VKDLTKLKMLNVGSN--------------QISDISVLNN--- 285

Query: 502 GHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGC 561
                     L  L  L L+ N            +  L  L +S N +T   P       
Sbjct: 286 ----------LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LASL 332

Query: 562 FSLEILALSNNRLQ 575
             ++    +N  ++
Sbjct: 333 SKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  129 bits (326), Expect = 1e-32
 Identities = 74/449 (16%), Positives = 149/449 (33%), Gaps = 104/449 (23%)

Query: 318 LRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHF 377
              L      +    P   A+L       +    +T+     +   L SI +L+++    
Sbjct: 2   AATLATLPAPINQIFPD--ADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEKV 56

Query: 378 FQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYH 437
                S++ +  L+ L+                                           
Sbjct: 57  ----ASIQGIEYLTNLEY------------------------------------------ 70

Query: 438 QHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFN 497
                 +NL+   ++   P   L N   L  L +  N              K+  +    
Sbjct: 71  ------LNLNGNQITDISP---LSNLVKLTNLYIGTN--------------KITDISALQ 107

Query: 498 NFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERM 557
           N             L  L EL L+ +  +   P   A++  +  L++  N    ++    
Sbjct: 108 N-------------LTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-- 150

Query: 558 ATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYL 617
            +    L  L ++ ++++    +   NLT+L +L L+ N  I +I   L+    L     
Sbjct: 151 LSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQ-IEDI-SPLASLTSLHYFTA 206

Query: 618 SDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSC 677
             N +    P  + N+  L  + + NN +    P+       L  L++  N I   + + 
Sbjct: 207 YVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLS--QLTWLEIGTNQI-SDINAV 261

Query: 678 FSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLA 737
                ++ +++  N+I     S++++   L +L L+ N L       I  L  L  L L+
Sbjct: 262 KDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319

Query: 738 HNYIKGEIPVQLCQLKEVRLIDLSHNNLS 766
            N+I    P  L  L ++   D ++  + 
Sbjct: 320 QNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  125 bits (317), Expect = 2e-31
 Identities = 63/340 (18%), Positives = 126/340 (37%), Gaps = 26/340 (7%)

Query: 441 LNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFF 500
                L   +++        E   ++  L++A   +  +    I     L  L++  N  
Sbjct: 24  GIRAVLQKASVTDVVT---QEELESITKLVVAGEKV--ASIQGIEYLTNLEYLNLNGNQI 78

Query: 501 QGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATG 560
               P+     L  L  L +  N    +  S+  ++  L  L ++ + ++   P      
Sbjct: 79  TDISPLS---NLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP---LAN 130

Query: 561 CFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDN 620
              +  L L  N     + S   N+T L  L +  +  + ++   ++    L  L L+ N
Sbjct: 131 LTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYN 187

Query: 621 HLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSP 680
            +    P  L +L +L Y     N +    P+       L  L + NN I   L    + 
Sbjct: 188 QIEDISP--LASLTSLHYFTAYVNQITDITPVANMT--RLNSLKIGNNKI-TDLSPLANL 242

Query: 681 ASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNY 740
           + +  + +  N+I     + + D   L  L++  N +   I   ++ L QLN L L +N 
Sbjct: 243 SQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQIS-DISV-LNNLSQLNSLFLNNNQ 298

Query: 741 IKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNE 780
           +  E    +  L  +  + LS N+++  I P    + ++ 
Sbjct: 299 LGNEDMEVIGGLTNLTTLFLSQNHITD-IRPLASLSKMDS 337

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.5 bits (132), Expect = 9e-08
 Identities = 31/218 (14%), Positives = 69/218 (31%), Gaps = 47/218 (21%)

Query: 707 LVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 766
             TL      ++   P     L +    +L    +   +     +L+ +  + ++   ++
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 767 GRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMS 826
             I      T+L            +      +            P+              
Sbjct: 58  S-IQGIEYLTNL----------EYLNLNGNQI--------TDISPLSN------------ 86

Query: 827 YYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIE 886
                  L  ++ + +  NK+T    + +  LT +  L L+ +N++   P   +NL ++ 
Sbjct: 87  -------LVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISP--LANLTKMY 135

Query: 887 SLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIP 924
           SL+L  N     + P L  +  L    V  + +    P
Sbjct: 136 SLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP 172

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.5 bits (127), Expect = 4e-07
 Identities = 17/87 (19%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
           LT +  +++  N+++    + +  L+++++L L++N L          L  + +L LS N
Sbjct: 264 LTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321

Query: 894 LLHGKIPPQLIVLNTLEVFKVAYNNLS 920
            +    P  L  L+ ++    A   + 
Sbjct: 322 HITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.2 bits (126), Expect = 4e-07
 Identities = 19/91 (20%), Positives = 45/91 (49%), Gaps = 4/91 (4%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
           L+ ++ +++  N+++      +  LT++  LN+  N ++    +  +NL Q+ SL L+ N
Sbjct: 242 LSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNN 297

Query: 894 LLHGKIPPQLIVLNTLEVFKVAYNNLSGKIP 924
            L  +    +  L  L    ++ N+++   P
Sbjct: 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.1 bits (118), Expect = 5e-06
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 6/88 (6%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
           LTS+       N++T   P  +  +TR+++L + +N +T   P   +NL Q+  L++  N
Sbjct: 198 LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN 253

Query: 894 LLHGKIPPQLIVLNTLEVFKVAYNNLSG 921
            +       +  L  L++  V  N +S 
Sbjct: 254 QISD--INAVKDLTKLKMLNVGSNQISD 279

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.9 bits (115), Expect = 1e-05
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 5/91 (5%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
           LT M  ++L  N    ++   +  +T ++ L ++ + +    P   +NL  + SL L+YN
Sbjct: 131 LTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187

Query: 894 LLHGKIPPQLIVLNTLEVFKVAYNNLSGKIP 924
            +    P  L  L +L  F    N ++   P
Sbjct: 188 QIEDISP--LASLTSLHYFTAYVNQITDITP 216

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  155 bits (393), Expect = 2e-40
 Identities = 91/471 (19%), Positives = 173/471 (36%), Gaps = 79/471 (16%)

Query: 6   FTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLR 65
            T   Q+ +L      I      +S++ +  L NL  +  ++N   +   + L  L+ L 
Sbjct: 42  QTDLDQVTTLQADRLGI------KSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLV 93

Query: 66  HLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIP 125
            + + +N++    DI  L +L+NL  L +  N I ++      + L  LN L L  + I 
Sbjct: 94  DILMNNNQIA---DITPLANLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSSNTI- 146

Query: 126 RIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQS 185
                  + ++  L SL+ L   +         + L N T LE L +  + +     +  
Sbjct: 147 -----SDISALSGLTSLQQLSFGNQVTD----LKPLANLTTLERLDISSNKVSD---ISV 194

Query: 186 IASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLN 245
           +A  T+L+ L   +  +             NL+ L +   Q+            S+ +L 
Sbjct: 195 LAKLTNLESLIATNNQISDI---TPLGILTNLDELSLNGNQLKDIGTL-----ASLTNLT 246

Query: 246 FLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLT 305
            L L N+ ++        L  L  L  L +  N + +  P  LA +T+L  L  + NQL 
Sbjct: 247 DLDLANNQISNLA----PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 300

Query: 306 GNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLT 365
                 +  L  L  L +  N++    P  +++LT L+ L    N+++     SSL +LT
Sbjct: 301 D--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS---DVSSLANLT 353

Query: 366 SIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGY 425
           +I  L   +N        L PL NL+++                        T+  ++  
Sbjct: 354 NINWLSAGHNQI----SDLTPLANLTRITQLGLNDQ--------------AWTNAPVN-- 393

Query: 426 VDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSL 476
                      ++ +++  N              + +  +     +  N  
Sbjct: 394 -----------YKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  151 bits (384), Expect = 3e-39
 Identities = 99/536 (18%), Positives = 195/536 (36%), Gaps = 81/536 (15%)

Query: 20  NNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSID 79
             I        +   + L       L   +  +++  S   L  +  L      +     
Sbjct: 6   ATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK---S 60

Query: 80  IKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSL 139
           I G+  L+NL +++ + N + ++      + L KL  + +  + I        +  + +L
Sbjct: 61  IDGVEYLNNLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQI------ADITPLANL 111

Query: 140 PSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQD 199
            +L  L L + +         L N TNL  L L  + +     + +++  TSL+ LS  +
Sbjct: 112 TNLTGLTLFNNQITDI---DPLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLSFGN 165

Query: 200 CVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVG-ESMPSLNFLSLTNSSLNKHT 258
            V       +       LE LD+       +     I     + +L  L  TN+ ++   
Sbjct: 166 QVTD----LKPLANLTTLERLDIS------SNKVSDISVLAKLTNLESLIATNNQISDI- 214

Query: 259 ILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLL 318
                L  L +L  L +  N L+D     LA++T+L  L  ++NQ++      L  L  L
Sbjct: 215 ---TPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN--LAPLSGLTKL 267

Query: 319 RKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFF 378
            +L +  N +    P  LA LT+L  L+++ NQL      S + +L ++  L L  N+  
Sbjct: 268 TELKLGANQISNISP--LAGLTALTNLELNENQLE---DISPISNLKNLTYLTLYFNNI- 321

Query: 379 QIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQ 438
                + P+ +L+KLQ      N              +++ +S             L + 
Sbjct: 322 ---SDISPVSSLTKLQRLFFYNN--------------KVSDVS------------SLANL 352

Query: 439 HDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNN 498
            ++N ++  H  +S   P   L N T +  L L + +   +   P++    ++  +   N
Sbjct: 353 TNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTNA---PVNYKANVSIPNTVKN 406

Query: 499 FFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIP 554
                I     +      E +++ N  +               +       +G + 
Sbjct: 407 VTGALIAPATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  150 bits (382), Expect = 5e-39
 Identities = 98/504 (19%), Positives = 171/504 (33%), Gaps = 88/504 (17%)

Query: 263 GLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLY 322
               L       +   ++ D +     ++  +  L A    +      G+  L  L ++ 
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQIN 74

Query: 323 IDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPI 382
             NN L    PL   NLT L  + ++ NQ+      + L +LT++  L L NN       
Sbjct: 75  FSNNQLTDITPL--KNLTKLVDILMNNNQIA---DITPLANLTNLTGLTLFNNQI----T 125

Query: 383 SLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLN 442
            ++PL NL+ L       N               ++ I              L     L 
Sbjct: 126 DIDPLKNLTNLNRLELSSN--------------TISDI------------SALSGLTSLQ 159

Query: 443 SVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQG 502
            ++  +  ++   P   L N T LE L +++N +  S    +     L +L   NN    
Sbjct: 160 QLSFGN-QVTDLKP---LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISD 213

Query: 503 HIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCF 562
             P+     L  L EL+L+ N        + A +  L  LD++NNQ++   P    +G  
Sbjct: 214 ITPLG---ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP---LSGLT 265

Query: 563 SLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHL 622
            L  L L  N++     S    LT L  L+L+ N         +S    L  L L  N++
Sbjct: 266 KLTELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNI 321

Query: 623 FGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPAS 682
               P  + +L  LQ +   NN +     +      ++  L   +N I     S  +P  
Sbjct: 322 SDISP--VSSLTKLQRLFFYNNKVSDVSSLANLT--NINWLSAGHNQI-----SDLTP-- 370

Query: 683 IEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIK 742
                             + +   +  L L+  +   +  N    +   N +      + 
Sbjct: 371 ------------------LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL- 411

Query: 743 GEIPVQLCQLKEVRLIDLSHNNLS 766
              P  +         D++ N  S
Sbjct: 412 -IAPATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  142 bits (361), Expect = 2e-36
 Identities = 103/459 (22%), Positives = 169/459 (36%), Gaps = 48/459 (10%)

Query: 213 KFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQG 272
                    +G   V    +        +  +  L            +D G+  L +L  
Sbjct: 22  ALAEKMKTVLGKTNVTDTVSQ-----TDLDQVTTLQADR---LGIKSID-GVEYLNNLTQ 72

Query: 273 LYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSL 332
           +   +N L D  P  L N+T L  +  ++NQ+       L  L  L  L + NN +    
Sbjct: 73  INFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDID 128

Query: 333 PLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSK 392
           PL   NLT+L  L++S N ++     S+L  LTS+++L   N         L+PL NL+ 
Sbjct: 129 PL--KNLTNLNRLELSSNTIS---DISALSGLTSLQQLSFGNQV-----TDLKPLANLTT 178

Query: 393 LQTFNGEINAQTE-SHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNL 451
           L+  +   N  ++ S    LT    L S+  +   +  +    L    +L+ ++L+   L
Sbjct: 179 LERLDISSNKVSDISVLAKLT---NLESLIATN--NQISDITPLGILTNLDELSLNGNQL 233

Query: 452 SGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTY 511
             +     L + TNL  L LANN +      P+    KL  L +  N      P+     
Sbjct: 234 K-DIGT--LASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLA---G 285

Query: 512 LPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSN 571
           L  L  L L+ N      P   +++K L  L +  N ++   P    +    L+ L   N
Sbjct: 286 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYN 340

Query: 572 NRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLG 631
           N++     S   NLTN+  L    N      P  L+    +  L L+D         +  
Sbjct: 341 NKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKA 396

Query: 632 NLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSI 670
           N+     +      L    P       S    D++ N  
Sbjct: 397 NVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  142 bits (361), Expect = 3e-36
 Identities = 89/445 (20%), Positives = 157/445 (35%), Gaps = 62/445 (13%)

Query: 336 LANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQT 395
              L       +    +T+ +S      L  +  L            S++ +  L+ L  
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGI----KSIDGVEYLNNLTQ 72

Query: 396 FNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEF 455
            N   N              QLT I+             L +   L  + +++  ++   
Sbjct: 73  INFSNN--------------QLTDIT------------PLKNLTKLVDILMNNNQIADIT 106

Query: 456 PNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGL 515
           P   L N TNL  L L NN +      P+ +   L  L++ +N       +     L  L
Sbjct: 107 P---LANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISALS---GLTSL 158

Query: 516 MELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQ 575
            +L+        +     A++  LERLDIS+N+++            +LE L  +NN++ 
Sbjct: 159 QQLSFGNQV---TDLKPLANLTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQIS 212

Query: 576 GHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPT 635
               +    LTNL  L L+GN        +L+    L  L L++N +    P  L  L  
Sbjct: 213 D--ITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTK 266

Query: 636 LQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEG 695
           L  + +  N +    P+      +L  L+L+ N +   +    +  ++  + L  N I  
Sbjct: 267 LTELKLGANQISNISPLAGLT--ALTNLELNENQLED-ISPISNLKNLTYLTLYFNNISD 323

Query: 696 RLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEV 755
                +     L  L    N +  S  + +  L  +N+L   HN I    P  L  L  +
Sbjct: 324 ISP--VSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRI 377

Query: 756 RLIDLSHNNLSGRIPPCLVNTSLNE 780
             + L+    +        N S+  
Sbjct: 378 TQLGLNDQAWTNAPVNYKANVSIPN 402

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  127 bits (320), Expect = 5e-31
 Identities = 78/350 (22%), Positives = 136/350 (38%), Gaps = 43/350 (12%)

Query: 6   FTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLR 65
                 L  L+LS N I        +  LS LT+L+ L   +     +    L  L++L 
Sbjct: 130 LKNLTNLNRLELSSNTI------SDISALSGLTSLQQLSFGNQV---TDLKPLANLTTLE 180

Query: 66  HLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIP 125
            L ++ N+++   DI  L  L+NLE L  T N I ++        L  L+ L L G+ + 
Sbjct: 181 RLDISSNKVS---DISVLAKLTNLESLIATNNQISDI---TPLGILTNLDELSLNGNQL- 233

Query: 126 RIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQS 185
                K + ++ SL +L  L L++ +         L   T L EL L  + +     +  
Sbjct: 234 -----KDIGTLASLTNLTDLDLANNQISNL---APLSGLTKLTELKLGANQI---SNISP 282

Query: 186 IASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLN 245
           +A  T+L +L + +  L+           KNL YL + +  +   +        S+  L 
Sbjct: 283 LAGLTALTNLELNENQLEDI---SPISNLKNLTYLTLYFNNISDISPV-----SSLTKLQ 334

Query: 246 FLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLT 305
            L   N   NK + +   L  L ++  L    N + D  P  LAN+T +  L  +    T
Sbjct: 335 RLFFYN---NKVSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388

Query: 306 GNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTEN 355
                    + +   +      L    P  +++  S    D+++N  +  
Sbjct: 389 NAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  125 bits (317), Expect = 1e-30
 Identities = 84/460 (18%), Positives = 156/460 (33%), Gaps = 69/460 (15%)

Query: 466 LETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAF 525
           L +  +  ++          +  +     +        +       L  +  L   R   
Sbjct: 3   LGSATITQDTPINQIF-TDTALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRL-- 56

Query: 526 NGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNL 585
                     +  L +++ SNNQLT   P         L  + ++NN++     +   NL
Sbjct: 57  GIKSIDGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIAD--ITPLANL 111

Query: 586 TNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNN 645
           TNL  L L  N      P  L     L  L LS N +       L  L +LQ +    N 
Sbjct: 112 TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF-GNQ 166

Query: 646 LEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNP 705
           +    P+      +L+ LD+S+N +   +       ++E +  + N+I     + +    
Sbjct: 167 VTDLKPLANLT--TLERLDISSNKV-SDISVLAKLTNLESLIATNNQISD--ITPLGILT 221

Query: 706 HLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNL 765
           +L  L L+ N L       +  L  L  L LA+N I    P  L  L ++  + L  N +
Sbjct: 222 NLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 277

Query: 766 SGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNM 825
           S  I P    T+L          T++      +        +   P+             
Sbjct: 278 SN-ISPLAGLTAL----------TNLELNENQL--------EDISPISN----------- 307

Query: 826 SYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQI 885
                   L +++ + L  N ++   P  +  LT++  L   +N ++    ++ +NL  I
Sbjct: 308 --------LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNI 355

Query: 886 ESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD 925
             L   +N +    P  L  L  +    +     +    +
Sbjct: 356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVN 393

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  122 bits (308), Expect = 2e-29
 Identities = 94/484 (19%), Positives = 158/484 (32%), Gaps = 94/484 (19%)

Query: 441 LNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFF 500
           + ++    L +        +E   NL  +  +NN L      P+ +  KL  + + NN  
Sbjct: 48  VTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQI 102

Query: 501 QGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATG 560
               P+     L  L  L L  N      P    ++  L RL++S+N ++        +G
Sbjct: 103 ADITPLA---NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISAL---SG 154

Query: 561 CFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDN 620
             SL+ L+  N        +   NLT L  L +  N         L+K   L  L  ++N
Sbjct: 155 LTSLQQLSFGNQVTDLKPLA---NLTTLERLDISSNKV--SDISVLAKLTNLESLIATNN 209

Query: 621 HLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSP 680
            +    P  LG L  L  + +  N L+    +      +L  LDL+NN I   L      
Sbjct: 210 QISDITP--LGILTNLDELSLNGNQLKDIGTLASLT--NLTDLDLANNQI-SNLAPLSGL 264

Query: 681 ASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNY 740
             + ++ L  N+I     S +     L  L+L+ N L    P  I  L  L YL L  N 
Sbjct: 265 TKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 320

Query: 741 IKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYR 800
           I    P  +  L +++ +   +N +S  +      T++            +      +  
Sbjct: 321 ISDISP--VSSLTKLQRLFFYNNKVSD-VSSLANLTNI----------NWLSAGHNQI-- 365

Query: 801 SACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTR 860
                     P+                     LT ++ + L+    T        Y   
Sbjct: 366 ------SDLTPLAN-------------------LTRITQLGLNDQAWTNAPVN---YKAN 397

Query: 861 IHALNLSHNNLTGTI-PTTFSNLKQIESLDLSYNLL-----------------------H 896
           +   N   N     I P T S+       D+++NL                         
Sbjct: 398 VSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFS 457

Query: 897 GKIP 900
           G + 
Sbjct: 458 GTVT 461

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  139 bits (351), Expect = 2e-34
 Identities = 91/575 (15%), Positives = 183/575 (31%), Gaps = 49/575 (8%)

Query: 6   FTPFQQLESLDLSWNNIAGCVQNESLER--LSRLTNLKFLYLNDNHFNNSIFSSLGGLSS 63
                  + +    + +        L    L     ++ L LND         +     +
Sbjct: 47  DITLNNQKIVTFKNSTM------RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHT 100

Query: 64  LRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSG 123
           ++ L +  N +   +      ++  L  L +  N + +L     F    KL TL +  + 
Sbjct: 101 IQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNN 158

Query: 124 IPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLL 183
           + RI+      +  +  SL+ L LS  +      +  L    +L    +         LL
Sbjct: 159 LERIEDD----TFQATTSLQNLQLSSNRLT----HVDLSLIPSLFHANVS------YNLL 204

Query: 184 QSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVG--ESM 241
            ++A   +++ L         +++         L  L +         N L       + 
Sbjct: 205 STLAIPIAVEELDASHN----SINVVRGPVNVELTILKL-------QHNNLTDTAWLLNY 253

Query: 242 PSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASS 301
           P L  + L+ + L    I+     ++  L+ LYI +N L   L      + +L+VL  S 
Sbjct: 254 PGLVEVDLSYNEL--EKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSH 310

Query: 302 NQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSL 361
           N L  ++     +   L  LY+D+N +  +L   L+   +L+ L +S+N    N   +  
Sbjct: 311 NHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALF 366

Query: 362 MHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSIS 421
            ++      +   +   +I   LE      +      +   Q  +   S+  K Q     
Sbjct: 367 RNVARP--AVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIAL-TSVVEKVQRAQGR 423

Query: 422 LSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFR 481
            S      +     ++      V L          N L      L    +    L     
Sbjct: 424 CSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLH 483

Query: 482 MPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLER 541
             I ++ +   L             ++ T+L       L           + A  K  E 
Sbjct: 484 AEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRET--QARRTEADAKQKETED 541

Query: 542 LDISNNQLTGEIPERMATGCFSLEILALSNNRLQG 576
           L+  N  L  ++  + A      +  +L   +++ 
Sbjct: 542 LEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQ 576

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  124 bits (312), Expect = 1e-29
 Identities = 74/336 (22%), Positives = 129/336 (38%), Gaps = 33/336 (9%)

Query: 440 DLNSVNLSHLNLSG----EFPNWLLENNTNLETLLLANNSL----FGSFRMPIHSHQKLA 491
           D+   N   +        + P  LL++   +E L L +  +      +F         + 
Sbjct: 47  DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA----YAHTIQ 102

Query: 492 TLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTG 551
            L +  N  + ++P  +   +P L  L L RN  +      F +   L  L +SNN L  
Sbjct: 103 KLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE- 160

Query: 552 EIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYM 611
            I +       SL+ L LS+NRL  H+  +   + +L    +  N        +L+    
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLT-HV--DLSLIPSLFHANVSYNLL-----STLAIPIA 212

Query: 612 LRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIF 671
           +  L  S N +   +         L  + + +NNL             L  +DLS N + 
Sbjct: 213 VEELDASHNSI-NVVRG--PVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELE 267

Query: 672 GTLPSCFSP-ASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQ 730
             +   F     +E++++S N++   L       P L  LDLS+N L   +     +  +
Sbjct: 268 KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR 325

Query: 731 LNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 766
           L  L L HN I     ++L     ++ + LSHN+  
Sbjct: 326 LENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  118 bits (296), Expect = 2e-27
 Identities = 63/311 (20%), Positives = 122/311 (39%), Gaps = 23/311 (7%)

Query: 460 LENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELN 519
           L+ +     + +   +    F     +      +   N+  +  +P  +      +  LN
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 81

Query: 520 LSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQ---G 576
           L+          +FA    +++L +  N +   +P  +      L +L L  N L     
Sbjct: 82  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPR 140

Query: 577 HIFSEKFNLTNLMTLQLDGNNFIGEIPES-LSKCYMLRGLYLSDNHLFGKIPRWLGNLPT 635
            IF    N   L TL +  NN +  I +        L+ L LS N L   +   L  +P+
Sbjct: 141 GIFH---NTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPS 193

Query: 636 LQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEG 695
           L +  +  N L            +++ LD S+NSI            +  + L  N +  
Sbjct: 194 LFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNV--ELTILKLQHNNLTD 246

Query: 696 RLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEV 755
              + + + P LV +DLSYN L   + +   ++ +L  L +++N +   + +    +  +
Sbjct: 247 --TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTL 303

Query: 756 RLIDLSHNNLS 766
           +++DLSHN+L 
Sbjct: 304 KVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  107 bits (269), Expect = 3e-24
 Identities = 94/557 (16%), Positives = 174/557 (31%), Gaps = 77/557 (13%)

Query: 185 SIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQV-DVNTNFLQIVGESMPS 243
           ++        + + D   +    G + +   N + +      +  +    L     S   
Sbjct: 22  NLQYDCVFYDVHI-DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLD----SFRQ 76

Query: 244 LNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQ 303
           +  L+L +  +    I          +Q LY+  N +R   P    N+  L VL    N 
Sbjct: 77  VELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 134

Query: 304 LTGNISPGL-CELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLM 362
           L+ ++  G+      L  L + NN+L           TSL+ L +S N+LT  +  S   
Sbjct: 135 LS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSL-- 190

Query: 363 HLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISL 422
            + S+    +S N    +         + +L   +  IN         LT   +L   +L
Sbjct: 191 -IPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRGPVNVELT-ILKLQHNNL 244

Query: 423 SGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRM 482
           +           L +   L  V+LS+  L  +           LE L ++NN        
Sbjct: 245 T------DTAWLL-NYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNR------- 289

Query: 483 PIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERL 542
                     L   N + Q          +P L  L+LS N     +  +      LE L
Sbjct: 290 ----------LVALNLYGQP---------IPTLKVLDLSHNHLL-HVERNQPQFDRLENL 329

Query: 543 DISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEI 602
            + +N +   +     +   +L+ L LS+N       S +    N+    +D        
Sbjct: 330 YLDHNSIV-TLKL---STHHTLKNLTLSHNDWDC--NSLRALFRNVARPAVDDA------ 377

Query: 603 PESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKI 662
            +     Y L             + R L  +          + +E     +     +  I
Sbjct: 378 DQHCKIDYQLEHGLCCKESDKPYLDRLLQYIA-------LTSVVEKVQRAQGRCSATDTI 430

Query: 663 LDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLES----IIHDNPHLVTLDLSYNSLH 718
             + + S + T          EQ+    N++   ++      I     L  L    ++  
Sbjct: 431 NSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNL 490

Query: 719 GSIPNRIDRLPQLNYLL 735
                  D L + +  L
Sbjct: 491 RRYRLPKDGLARSSDNL 507

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 81.1 bits (200), Expect = 8e-16
 Identities = 57/400 (14%), Positives = 115/400 (28%), Gaps = 42/400 (10%)

Query: 4   SLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSS 63
           S       +E LD S N+I        +        L  L L  N+  +   + L     
Sbjct: 205 STLAIPIAVEELDASHNSI------NVVRGPV-NVELTILKLQHNNLTD--TAWLLNYPG 255

Query: 64  LRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSG 123
           L  + L+ N L   I       +  LE L ++ N +  L      + +  L  L L  + 
Sbjct: 256 LVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNH 312

Query: 124 IPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLL 183
           +  ++     ++      L+ LYL H          KL     L+ L L  +D   + L 
Sbjct: 313 LLHVE-----RNQPQFDRLENLYLDHNSIV----TLKLSTHHTLKNLTLSHNDWDCNSLR 363

Query: 184 QSIASFTSLK------HLSMQDCVLKGALHGQDF--LKFKNLEYLDMGWVQVDVNT---- 231
               +           H  +   +  G    +       + L+Y+ +  V   V      
Sbjct: 364 ALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGR 423

Query: 232 -------NFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGL 284
                  N +Q +   +     + L  +   +  + +              ++  L+   
Sbjct: 424 CSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLH 483

Query: 285 PWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRV 344
                N+   ++      + + N++     L   +   +     R       A       
Sbjct: 484 AEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQAR--RTEADAKQKETED 541

Query: 345 LDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISL 384
           L+     L + + +         +E  L      Q+    
Sbjct: 542 LEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
           +  +  + +S N+L   +      +  +  L+LSHN+L   +        ++E+L L +N
Sbjct: 277 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 334

Query: 894 LLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGQPLS 949
            +   +       +TL+   +++N+       RA F      + +     C     
Sbjct: 335 SIV-TLKLS--THHTLKNLTLSHNDWDC-NSLRALFRNVARPAVDDADQHCKIDYQ 386

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 892
           +  ++ + L  N L+  +P  I     ++  L++S+NNL      TF     +++L LS 
Sbjct: 122 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180

Query: 893 NLLHGKIPPQLIVLNTLEVFKVAYNNLS 920
           N L   +   L  + +L    V+YN LS
Sbjct: 181 NRLT-HVDLSL--IPSLFHANVSYNLLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.8 bits (111), Expect = 3e-05
 Identities = 19/88 (21%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 833 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 892
           +   ++ + L  N LT +    +     +  ++LS+N L   +   F  ++++E L +S 
Sbjct: 230 VNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287

Query: 893 NLLHGKIPPQLIVLNTLEVFKVAYNNLS 920
           N L   +      + TL+V  +++N+L 
Sbjct: 288 NRLV-ALNLYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.7 bits (108), Expect = 8e-05
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 892
              +  ++L+  ++  EI T    Y   I  L +  N +    P  F N+  +  L L  
Sbjct: 74  FRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 132

Query: 893 NLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRA 927
           N L   +P  +      L    ++ NNL  +I D  
Sbjct: 133 NDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDT 166

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  134 bits (339), Expect = 2e-33
 Identities = 62/408 (15%), Positives = 136/408 (33%), Gaps = 28/408 (6%)

Query: 507 EIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEI 566
           EI           ++ ++   ++ S       ++ LD+S N L+ +I          LE+
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 567 LALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKI 626
           L LS+N L      +  +L+ L TL L+ N  + E+    S    +  L+ ++N++  ++
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNY-VQELLVGPS----IETLHAANNNI-SRV 114

Query: 627 PRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSP--ASIE 684
                     + I + NN +     ++   R  ++ LDL  N I     +  +    ++E
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 685 QVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGE 744
            ++L  N I   ++  +     L TLDLS N L   +         + ++ L +N +   
Sbjct: 173 HLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-L 228

Query: 745 IPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACL 804
           I   L   + +   DL  N           + +            ++  +          
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV--------QTVAKQTVKKLTGQNE 280

Query: 805 PGQSSPPMGKEETVQFTTKNMSYYYQGRILTS--MSGIDLSCNKLTGEIPTQIGYLTRIH 862
              + P +G             +  +   L     + +    ++    +  +     R  
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE-RLECERENQARQR 339

Query: 863 ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLE 910
            ++         I       +   +L+     L  ++         L+
Sbjct: 340 EIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  133 bits (336), Expect = 5e-33
 Identities = 66/495 (13%), Positives = 150/495 (30%), Gaps = 61/495 (12%)

Query: 283 GLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSL 342
            +     N    ++   + + L   ++        +++L +  N L       LA  T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 343 RVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINA 402
            +L++S N L E   +  L  L+++  L L+NN+       ++ L     ++T +   N 
Sbjct: 61  ELLNLSSNVLYE---TLDLESLSTLRTLDLNNNY-------VQELLVGPSIETLHAANN- 109

Query: 403 QTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSG----EFPNW 458
                         ++ +S S                        ++ L+        + 
Sbjct: 110 -------------NISRVSCS------RGQ------------GKKNIYLANNKITMLRDL 138

Query: 459 LLENNTNLETLLLANNSLFG-SFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLME 517
                + ++ L L  N +   +F     S   L  L++  NF    +  ++      L  
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLKT 195

Query: 518 LNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGH 577
           L+LS N     +   F     +  + + NN+L   I + +     +LE   L  N     
Sbjct: 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFH-C 251

Query: 578 IFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQ 637
                F   N     +          ++  +C +    +            +   L  L+
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALK 311

Query: 638 YIIMPNNNLEG----PIPIEFCQRDSLKILDLSNNSIFGTLPSCFSP-ASIEQVHLSKNK 692
                  + +G     +  E   +   + +D         +        +   +   K  
Sbjct: 312 RKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKA 371

Query: 693 IEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYL-LLAHNYIKGEIPVQLCQ 751
           ++ ++ +    +  L             + +  +    L  L  +   Y +  +  Q  Q
Sbjct: 372 LDEQVSNGRRAHAELDGTLQQAVGQ-IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQ 430

Query: 752 LKEVRLIDLSHNNLS 766
              +R  D+  +  +
Sbjct: 431 NNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  126 bits (319), Expect = 8e-31
 Identities = 67/522 (12%), Positives = 144/522 (27%), Gaps = 93/522 (17%)

Query: 37  LTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTG 96
               K   + D+    ++ S      +++ L L+ N L+  I    L   + LE L+++ 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 97  NAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTV 156
           N +       D   L  L TL L  + +         Q +   PS++TL+ ++       
Sbjct: 68  NVLYET---LDLESLSTLRTLDLNNNYV---------QELLVGPSIETLHAAN------- 108

Query: 157 VNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKN 216
                    N+  +              S +     K++ + +  +   L   D      
Sbjct: 109 --------NNISRV--------------SCSRGQGKKNIYLANNKITM-LRDLDEGCRSR 145

Query: 217 LEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIR 276
           ++YLD+                     LN +     ++N   +          L+ L ++
Sbjct: 146 VQYLDL--------------------KLNEI----DTVNFAELAA----SSDTLEHLNLQ 177

Query: 277 DNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCL 336
            N + D +         L+ L  SSN+L   + P       +  + + NN L   +   L
Sbjct: 178 YNFIYD-VK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKAL 233

Query: 337 ANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTF 396
               +L   D+  N                ++ +           ++ +     +     
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK----LTGQNEEECTVPTLG 289

Query: 397 NGEINAQTESHYDSLTPKFQLTSISLS----GYVDGGTFPEFLYHQHDLNSVNLSHLNLS 452
           +       +           L     +       +         +Q     ++       
Sbjct: 290 HYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR 349

Query: 453 GEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYL 512
               + +        TL     +L         +H +L          Q    +E+    
Sbjct: 350 -TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDG-----TLQQAVGQIELQHAT 403

Query: 513 PGLMELNLSRNAFN----GSIPSSFADMKMLERLDISNNQLT 550
                L L R          +         +   D+  ++ T
Sbjct: 404 EEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  115 bits (290), Expect = 4e-27
 Identities = 67/409 (16%), Positives = 139/409 (33%), Gaps = 40/409 (9%)

Query: 10  QQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSL 69
            + +   ++ +++    +           N+K L L+ N  +    + L   + L  L+L
Sbjct: 10  NRYKIEKVTDSSL----KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 70  ADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDG 129
           + N L  ++D++    LS L  LD+  N ++ L           + TL+   + I R+  
Sbjct: 66  SSNVLYETLDLES---LSTLRTLDLNNNYVQEL------LVGPSIETLHAANNNISRV-- 114

Query: 130 SKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASF 189
                S       K +YL++ K    + +      + ++ L L  +++      +  AS 
Sbjct: 115 -----SCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 190 TSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGES---MPSLNF 246
            +L+HL++Q   +   + GQ       L+ LD+         N L  +G        + +
Sbjct: 169 DTLEHLNLQYNFIY-DVKGQVVF--AKLKTLDLSS-------NKLAFMGPEFQSAAGVTW 218

Query: 247 LSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLR-DGLPWCLANMTSLQVLYASSNQ-L 304
           +SL N   NK  ++++ L    +L+   +R N      L    +    +Q +   + + L
Sbjct: 219 ISLRN---NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275

Query: 305 TGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHL 364
           TG          L         DL       L  L       +S              + 
Sbjct: 276 TGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQ 335

Query: 365 TSIEELILSNNHFFQIPI-SLEPLFNLSKLQTFNGEINAQTESHYDSLT 412
               E+      +  +             L+     ++ Q  +   +  
Sbjct: 336 ARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHA 384

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  114 bits (288), Expect = 6e-27
 Identities = 59/383 (15%), Positives = 116/383 (30%), Gaps = 27/383 (7%)

Query: 6   FTPFQQLESLDLSWNNIAGCVQNESLERL------------SRLTNLKFLYLNDNHFNNS 53
                 L +LDL+ N +   +   S+E L            SR    K +YL +N     
Sbjct: 76  LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITML 135

Query: 54  IFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRK 113
                G  S +++L L  N ++     +   S   LE L++  N I ++   K      K
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV---KGQVVFAK 192

Query: 114 LNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILD 173
           L TL L  + +  +          S   +  + L + K    ++ + L    NLE   L 
Sbjct: 193 LKTLDLSSNKLAFMGP-----EFQSAAGVTWISLRNNKL--VLIEKALRFSQNLEHFDLR 245

Query: 174 ESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNF 233
            +  H   L    +    ++ ++ Q       L GQ+  +         G    +     
Sbjct: 246 GNGFHCGTLRDFFSKNQRVQTVAKQTV---KKLTGQNEEECTVPTLGHYGAYCCEDLPAP 302

Query: 234 LQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTS 293
                 ++      +L +   ++   L+         + +       R  +        +
Sbjct: 303 FADRLIALKRKE-HALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQA 361

Query: 294 LQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLT 353
              L      L   +S G      L          +  L       + L++L     +  
Sbjct: 362 KITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG-QIELQHATEEQSPLQLLRAIVKRYE 420

Query: 354 ENISSSSLMHLTSIEELILSNNH 376
           E       +   +I +  +  + 
Sbjct: 421 EMYVEQQSVQNNAIRDWDMYQHK 443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.9 bits (132), Expect = 1e-07
 Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
                   ++ + L   + +       +  L+LS N L+       +   ++E L+LS N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 894 LLHGKIPPQLIVLNTLEVFKVAYNNLS 920
           +L+      L  L+TL    +  N + 
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYVQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 832 RILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTG-TIPTTFSNLKQIESLDL 890
                   I L+ NK+T       G  +R+  L+L  N +         ++   +E L+L
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 891 SYNLLHGKIPPQLIVLNTLEVFKVAYNNLS 920
            YN ++  +    +V   L+   ++ N L+
Sbjct: 177 QYNFIY-DVKG-QVVFAKLKTLDLSSNKLA 204

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.1 bits (117), Expect = 6e-06
 Identities = 12/71 (16%), Positives = 27/71 (38%)

Query: 697 LESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVR 756
           +  I  +        ++ +SL  ++ +       +  L L+ N +       L    ++ 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 757 LIDLSHNNLSG 767
           L++LS N L  
Sbjct: 62  LLNLSSNVLYE 72

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.3 bits (115), Expect = 1e-05
 Identities = 14/71 (19%), Positives = 26/71 (36%)

Query: 851 IPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLE 910
           I        R     ++ ++L   + +   +   ++ LDLS N L       L     LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 911 VFKVAYNNLSG 921
           +  ++ N L  
Sbjct: 62  LLNLSSNVLYE 72

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 4/88 (4%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
             S+  +  + N ++  +            + L++N +T           +++ LDL  N
Sbjct: 98  GPSIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

Query: 894 LLHGKIPPQLIV-LNTLEVFKVAYNNLS 920
            +      +L    +TLE   + YN + 
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIY 182

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.1 bits (99), Expect = 8e-04
 Identities = 12/97 (12%), Positives = 37/97 (38%), Gaps = 9/97 (9%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
           L+++  +DL+ N +      ++     I  L+ ++NN++    +     K   ++ L+ N
Sbjct: 79  LSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGKK---NIYLANN 130

Query: 894 LLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFS 930
            +           + ++   +  N +   +      +
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAA 166

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  132 bits (333), Expect = 1e-32
 Identities = 87/521 (16%), Positives = 165/521 (31%), Gaps = 94/521 (18%)

Query: 265 CQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYID 324
                LQ      ++L + +P    N+ S    Y + ++   N  PG  E   +    + 
Sbjct: 8   VSNTFLQEPLRHSSNLTE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 325 NNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISL 384
           +                   L+++   L+  +          +E L+ S N   ++P   
Sbjct: 67  DC-----------LDRQAHELELNNLGLSS-LPEL----PPHLESLVASCNSLTELP--- 107

Query: 385 EPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSV 444
           E   +L  L   N  +          L P   L  + +S        PE        NS 
Sbjct: 108 ELPQSLKSLLVDNNNLK-----ALSDLPPL--LEYLGVS-NNQLEKLPEL------QNSS 153

Query: 445 NLSHLNLSG----EFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFF 500
            L  +++      + P+       +LE +   NN L       + +   L  +   NN  
Sbjct: 154 FLKIIDVDNNSLKKLPDLP----PSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSL 207

Query: 501 QGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATG 560
           +  +P    +    L  +    N           ++  L  +   NN L   +P+     
Sbjct: 208 K-KLPDLPLS----LESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPD----L 255

Query: 561 CFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDN 620
             SLE L + +N L   +     +LT L        N    + E       L  L  S N
Sbjct: 256 PPSLEALNVRDNYLT-DLPELPQSLTFLDVS----ENIFSGLSELPPN---LYYLNASSN 307

Query: 621 HLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSP 680
               +I       P+L+ + + NN L   +P        L+ L  S N +   +P    P
Sbjct: 308 ----EIRSLCDLPPSLEELNVSNNKLIE-LPALPP---RLERLIASFNHL-AEVPE--LP 356

Query: 681 ASIEQVHLSKNKIE------GRLESIIHDN---------PHLVTLDLSYNSLHGSIPNRI 725
            +++Q+H+  N +         +E +  ++          +L  L +  N L    P+  
Sbjct: 357 QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIP 415

Query: 726 DRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 766
           + +  L    +    +            ++      H++  
Sbjct: 416 ESVEDLR---MNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  124 bits (314), Expect = 3e-30
 Identities = 106/535 (19%), Positives = 199/535 (37%), Gaps = 93/535 (17%)

Query: 364 LTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLS 423
            T ++E +  +++  ++P+      N+     +    +    +       + ++    L 
Sbjct: 10  NTFLQEPLRHSSNLTEMPVEA---ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 424 GYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMP 483
             +D              + + L++L LS   P        +LE+L+ + NSL     +P
Sbjct: 67  DCLDRQ-----------AHELELNNLGLS-SLPELP----PHLESLVASCNSLT---ELP 107

Query: 484 IHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLD 543
               Q L +L V NN  +      +    P L  L +S N     +P    +   L+ +D
Sbjct: 108 -ELPQSLKSLLVDNNNLK-----ALSDLPPLLEYLGVSNNQLE-KLPE-LQNSSFLKIID 159

Query: 544 ISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIP 603
           + NN L  ++P+       SLE +A  NN+L+     E  NL  L  +  D N+ + ++P
Sbjct: 160 VDNNSLK-KLPDLPP----SLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNS-LKKLP 211

Query: 604 ESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKIL 663
           +       L  +   +N L  +    L NLP L  I   NN L+  +P       SL+ L
Sbjct: 212 DLPLS---LESIVAGNNIL--EELPELQNLPFLTTIYADNNLLKT-LPDLPP---SLEAL 262

Query: 664 DLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPN 723
           ++ +N +   LP    P S+  + +S+N     L  +    P+L  L+ S N +  S+  
Sbjct: 263 NVRDNYL-TDLPE--LPQSLTFLDVSENIFS-GLSELP---PNLYYLNASSNEIR-SLC- 313

Query: 724 RIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVN-TSLNEGY 782
             D  P L  L +++N +  E+P    +L+    +  S N+L+  +P    N   L+  Y
Sbjct: 314 --DLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPELPQNLKQLHVEY 366

Query: 783 -HGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGID 841
                 P                           E+V+    N        +  ++  + 
Sbjct: 367 NPLREFPDIP------------------------ESVEDLRMNSHLAEVPELPQNLKQLH 402

Query: 842 LSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 896
           +  N L  E P     +     L ++   +            ++E     ++  H
Sbjct: 403 VETNPLR-EFPDIPESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  120 bits (304), Expect = 5e-29
 Identities = 101/480 (21%), Positives = 167/480 (34%), Gaps = 97/480 (20%)

Query: 308 ISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHL--- 364
           I+P       L++    +++L   +P+   N+ S      ++++   N    +       
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 365 ---------TSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKF 415
                        EL L+N     +P   E   +L  L       N              
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLSSLP---ELPPHLESLVASC---N-------------- 101

Query: 416 QLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNS 475
            LT +           PE       L   N +   LS   P         LE L ++NN 
Sbjct: 102 SLTEL-----------PELPQSLKSLLVDNNNLKALSDLPP--------LLEYLGVSNNQ 142

Query: 476 LFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFAD 535
           L       + +   L  +DV NN  +  +P    +    L  +    N     +P    +
Sbjct: 143 L--EKLPELQNSSFLKIIDVDNNSLK-KLPDLPPS----LEFIAAGNNQLE-ELP-ELQN 193

Query: 536 MKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDG 595
           +  L  +   NN L  ++P+       SLE +   NN L      E  NL  L T+  D 
Sbjct: 194 LPFLTAIYADNNSLK-KLPD----LPLSLESIVAGNNIL--EELPELQNLPFLTTIYADN 246

Query: 596 NNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFC 655
           N  +  +P+       L  L + DN+L   +P    +L  L       + L    P    
Sbjct: 247 NL-LKTLPDLPPS---LEALNVRDNYL-TDLPELPQSLTFLDVSENIFSGLSELPP---- 297

Query: 656 QRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYN 715
              +L  L+ S+N I  +L     P S+E++++S NK    L  +    P L  L  S+N
Sbjct: 298 ---NLYYLNASSNEI-RSLCD--LPPSLEELNVSNNK----LIELPALPPRLERLIASFN 347

Query: 716 SLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVN 775
            L   +P     L QL+   + +N ++ E P     ++     DL  N+    +P    N
Sbjct: 348 HLA-EVPELPQNLKQLH---VEYNPLR-EFPDIPESVE-----DLRMNSHLAEVPELPQN 397

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  112 bits (281), Expect = 4e-26
 Identities = 100/476 (21%), Positives = 168/476 (35%), Gaps = 103/476 (21%)

Query: 462 NNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYL--------- 512
           +NT L+  L  +++L     +   + +         + ++ + P   G            
Sbjct: 9   SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 513 ---PGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILAL 569
                  EL L+    + S+P        LE L  S N LT E+PE       SL +   
Sbjct: 68  CLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELP-QSLKSLLVDNN 121

Query: 570 SNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRW 629
           +   L             L  L +  NN + ++PE L     L+ + + +N L  K+P  
Sbjct: 122 NLKALSD-------LPPLLEYLGVS-NNQLEKLPE-LQNSSFLKIIDVDNNSL-KKLPDL 171

Query: 630 LGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLS 689
             +L   ++I   NN LE    ++      L  +   NNS+   LP    P S+E +   
Sbjct: 172 PPSL---EFIAAGNNQLEELPELQNLP--FLTAIYADNNSL-KKLPD--LPLSLESIVAG 223

Query: 690 KNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQL 749
            N +E  L  + +  P L T+    N L  ++P   D  P L  L +  NY+  ++P   
Sbjct: 224 NNILE-ELPELQN-LPFLTTIYADNNLLK-TLP---DLPPSLEALNVRDNYLT-DLPELP 276

Query: 750 CQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSS 809
             L  + + +   + LS  +PP L   + +                        L     
Sbjct: 277 QSLTFLDVSENIFSGLS-ELPPNLYYLNASSNEIRS------------------LCDL-- 315

Query: 810 PPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHN 869
                                     S+  +++S NKL  E+P     L R   L  S N
Sbjct: 316 ------------------------PPSLEELNVSNNKLI-ELPALPPRLER---LIASFN 347

Query: 870 NLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD 925
           +L   +P    NLK    L + YN L  + P     +  L +     N+   ++P+
Sbjct: 348 HLA-EVPELPQNLK---QLHVEYNPLR-EFPDIPESVEDLRM-----NSHLAEVPE 393

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  107 bits (270), Expect = 1e-24
 Identities = 86/549 (15%), Positives = 171/549 (31%), Gaps = 116/549 (21%)

Query: 11  QLESLDLSWNNIAGCVQNESL-ERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSL 69
            L+      +N+        +      + +    Y   + +  +     G    +    L
Sbjct: 12  FLQEPLRHSSNL------TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 70  ADNRLNG--SIDIKGLN------SLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGG 121
            D        +++  L          +LE L  + N++  L  P+  + L+ L       
Sbjct: 66  RDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTEL--PELPQSLKSLLVDNNNL 123

Query: 122 SGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQ 181
             +  +            P L+ L +S+ + +      +L N + L+ +     D+  + 
Sbjct: 124 KALSDL-----------PPLLEYLGVSNNQLE---KLPELQNSSFLKII-----DVDNNS 164

Query: 182 LLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESM 241
           L +      SL+ ++  +  L+      +      L  +         + N L+ + +  
Sbjct: 165 LKKLPDLPPSLEFIAAGNNQLE---ELPELQNLPFLTAI-------YADNNSLKKLPDLP 214

Query: 242 PSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASS 301
            SL  +   N   N    L + L  L  L  +Y  +N L+  LP       SL+ L    
Sbjct: 215 LSLESIVAGN---NILEELPE-LQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRD 266

Query: 302 NQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSL 361
           N LT ++      L  L       + L    P       +L  L+ S N++         
Sbjct: 267 NYLT-DLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIRSLCDL--- 315

Query: 362 MHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSIS 421
               S+EEL +SNN   ++P          +L+      N               L  + 
Sbjct: 316 --PPSLEELNVSNNKLIELPAL------PPRLERLIASFN--------------HLAEV- 352

Query: 422 LSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFR 481
                     PE   +   L  +++ +  L  EFP+       ++E L + ++       
Sbjct: 353 ----------PELPQN---LKQLHVEYNPLR-EFPDIP----ESVEDLRMNSH-----LA 389

Query: 482 MPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLER 541
                 Q L  L V  N  +   P    +    + +L ++          +      LE 
Sbjct: 390 EVPELPQNLKQLHVETNPLR-EFPDIPES----VEDLRMNSERVVDPYEFAHETTDKLED 444

Query: 542 LDISNNQLT 550
               ++   
Sbjct: 445 DVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  103 bits (259), Expect = 2e-23
 Identities = 70/411 (17%), Positives = 136/411 (33%), Gaps = 86/411 (20%)

Query: 8   PFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHL 67
             +Q   L+L+   +       SL  L    +L+ L  + N     +      L SL   
Sbjct: 69  LDRQAHELELNNLGL------SSLPEL--PPHLESLVASCNSL-TELPELPQSLKSLLVD 119

Query: 68  SLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRI 127
           +     L+             LE L ++ N +E L    + +    L  + +  + + ++
Sbjct: 120 NNNLKALSDLP--------PLLEYLGVSNNQLEKL---PELQNSSFLKIIDVDNNSLKKL 168

Query: 128 DGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIA 187
                       PSL+ +   + + +      +L N   L  +         + L +   
Sbjct: 169 --------PDLPPSLEFIAAGNNQLEEL---PELQNLPFLTAI-----YADNNSLKKLPD 212

Query: 188 SFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFL 247
              SL+ +   + +L+      +      L  +         + N L+ + +  PSL  L
Sbjct: 213 LPLSLESIVAGNNILE---ELPELQNLPFLTTI-------YADNNLLKTLPDLPPSLEAL 262

Query: 248 SLTNSSLNKHTILDQGLCQL--------------VHLQGLYIRDNDLRDGLPWCLANMTS 293
           ++ ++ L     L Q L  L               +L  L    N++R  L        S
Sbjct: 263 NVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS-LC---DLPPS 318

Query: 294 LQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLT 353
           L+ L  S+N+L   +         L +L    N L   +P       +L+ L V YN L 
Sbjct: 319 LEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVP---ELPQNLKQLHVEYNPLR 370

Query: 354 E--------------NISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNL 390
           E              +  +       ++++L +  N   + P   E + +L
Sbjct: 371 EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDL 421

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  101 bits (255), Expect = 8e-23
 Identities = 68/383 (17%), Positives = 137/383 (35%), Gaps = 78/383 (20%)

Query: 10  QQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSL 69
             LE L +S N +      E L  L   + LK + +++N     +        SL  ++ 
Sbjct: 131 PLLEYLGVSNNQL------EKLPELQNSSFLKIIDVDNNSLK-KLPDLPP---SLEFIAA 180

Query: 70  ADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDG 129
            +N+L    ++  L +L  L  +    N+++ L           L ++  G + +     
Sbjct: 181 GNNQLE---ELPELQNLPFLTAIYADNNSLKKL-----PDLPLSLESIVAGNNIL----- 227

Query: 130 SKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASF 189
            + L  + +LP L T+Y  +       +     +        L+  D +++ L +   S 
Sbjct: 228 -EELPELQNLPFLTTIYADNNLL--KTLPDLPPSLEA-----LNVRDNYLTDLPELPQSL 279

Query: 190 TSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSL 249
           T L         L             NL YL+        ++N ++ + +  PSL  L++
Sbjct: 280 TFLDVSENIFSGLSELP--------PNLYYLNA-------SSNEIRSLCDLPPSLEELNV 324

Query: 250 TNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNIS 309
           +N   NK   L     +   L+ L    N L + +P    N   L+ L+   N L     
Sbjct: 325 SN---NKLIELPALPPR---LERLIASFNHLAE-VPELPQN---LKQLHVEYNPLR-EFP 373

Query: 310 PGLCELVL----------------LRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLT 353
                +                  L++L+++ N LR   P       S+  L ++  ++ 
Sbjct: 374 DIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFP---DIPESVEDLRMNSERVV 429

Query: 354 ENISSSSLMHLTSIEELILSNNH 376
           +     +      +E+ +  ++H
Sbjct: 430 D-PYEFAHETTDKLEDDVFEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 78.9 bits (195), Expect = 2e-15
 Identities = 55/342 (16%), Positives = 106/342 (30%), Gaps = 72/342 (21%)

Query: 583 FNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMP 642
            + T L       +N + E+P            Y + +      P   G    +    + 
Sbjct: 8   VSNTFLQEPLRHSSN-LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 643 NNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIH 702
           +           C       L+L+N  +  +LP    P  +E +  S N +   L  +  
Sbjct: 67  D-----------CLDRQAHELELNNLGL-SSLPE--LPPHLESLVASCNSLT-ELPELPQ 111

Query: 703 DNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSH 762
               L+  + +  +L    P        L YL +++N ++ ++P +L     +++ID+ +
Sbjct: 112 SLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDN 162

Query: 763 NNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTT 822
           N+L  ++P      SL            I      +        +  P +          
Sbjct: 163 NSLK-KLPDLP--PSL----------EFIAAGNNQL--------EELPELQN-------- 193

Query: 823 KNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNL 882
                      L  ++ I    N L  ++P     L     +   +N L         NL
Sbjct: 194 -----------LPFLTAIYADNNSLK-KLPDLPLSLES---IVAGNNILE--ELPELQNL 236

Query: 883 KQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIP 924
             + ++    NLL   +P     L  L V      +L     
Sbjct: 237 PFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQ 277

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 73.1 bits (180), Expect = 2e-13
 Identities = 52/294 (17%), Positives = 98/294 (33%), Gaps = 70/294 (23%)

Query: 627 PRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQV 686
           PR + N   LQ  +  ++NL   +P+E     S      + +      P    P + EQ 
Sbjct: 5   PRNVSNT-FLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAP----PGNGEQR 58

Query: 687 HLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIP 746
            ++ +++   L      +     L+L+   L  S+P      P L  L+ + N +  E+P
Sbjct: 59  EMAVSRLRDCL------DRQAHELELNNLGLS-SLPELP---PHLESLVASCNSLT-ELP 107

Query: 747 VQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPG 806
                LK + + + +   LS  +PP L                 +      +        
Sbjct: 108 ELPQSLKSLLVDNNNLKALSD-LPPLL---------------EYLGVSNNQL-------- 143

Query: 807 QSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNL 866
           +  P +                      + +  ID+  N L  ++P     L     +  
Sbjct: 144 EKLPELQN-------------------SSFLKIIDVDNNSLK-KLPDLPPSLEF---IAA 180

Query: 867 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLS 920
            +N L   +P    NL  + ++    N L  K+P   + L ++       N L 
Sbjct: 181 GNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLSLESIV---AGNNILE 228

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.5 bits (155), Expect = 2e-10
 Identities = 58/324 (17%), Positives = 98/324 (30%), Gaps = 83/324 (25%)

Query: 4   SLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSS 63
            L      LES+    N +      E L  L  L  L  +Y +    NN + +      S
Sbjct: 209 KLPDLPLSLESIVAGNNIL------EELPELQNLPFLTTIYAD----NNLLKTLPDLPPS 258

Query: 64  LRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSG 123
           L  L++ DN L    +        +L  LD++ N    L   +    L  LN        
Sbjct: 259 LEALNVRDNYLTDLPE-----LPQSLTFLDVSENIFSGL--SELPPNLYYLNASSNEIRS 311

Query: 124 IPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKL-HNFTNLEELILDESDLHVSQL 182
           +               PSL+ L +S+ K        +L      LE LI        + L
Sbjct: 312 LC-----------DLPPSLEELNVSNNKL------IELPALPPRLERLIASF-----NHL 349

Query: 183 LQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMP 242
            +      +LK L                                 V  N L+   +   
Sbjct: 350 AEVPELPQNLKQL--------------------------------HVEYNPLREFPDIPE 377

Query: 243 SLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSN 302
           S+  L + +        L +      +L+ L++  N LR+  P       S++ L  +S 
Sbjct: 378 SVEDLRMNSH-------LAEVPELPQNLKQLHVETNPLRE-FP---DIPESVEDLRMNSE 426

Query: 303 QLTGNISPGLCELVLLRKLYIDNN 326
           ++             L     +++
Sbjct: 427 RVVDPYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.0 bits (107), Expect = 9e-05
 Identities = 30/187 (16%), Positives = 50/187 (26%), Gaps = 52/187 (27%)

Query: 721 IPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNE 780
           I  R      L   L   + +  E+PV+   +K       + +      PP         
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM- 60

Query: 781 GYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGI 840
                          A      CL                                   +
Sbjct: 61  ---------------AVSRLRDCLD-----------------------------RQAHEL 76

Query: 841 DLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 900
           +L+   L+  +P    +L     L  S N+LT  +P    +LK +   + +   L   +P
Sbjct: 77  ELNNLGLS-SLPELPPHLES---LVASCNSLT-ELPELPQSLKSLLVDNNNLKALSD-LP 130

Query: 901 PQLIVLN 907
           P L  L 
Sbjct: 131 PLLEYLG 137

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  130 bits (328), Expect = 1e-32
 Identities = 74/444 (16%), Positives = 147/444 (33%), Gaps = 83/444 (18%)

Query: 243 SLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSN 302
               + +   + + +   +     L + + +  +++ +R      L +   +++L  +  
Sbjct: 22  VFYDVHIDMQTQDVYFGFED--ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 79

Query: 303 QLTGNISPG-LCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSL 361
           Q+   I          ++KLY+  N +R   P    N+  L VL +  N L+  +     
Sbjct: 80  QIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIF 137

Query: 362 MHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSIS 421
            +   +  L +SNN+  +I          + LQ      N              +LT + 
Sbjct: 138 HNTPKLTTLSMSNNNLERIEDDT--FQATTSLQNLQLSSN--------------RLTHVD 181

Query: 422 LSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFR 481
           L         P        L   N+S+  LS       L     +E L  ++NS+     
Sbjct: 182 L------SLIP-------SLFHANVSYNLLS------TLAIPIAVEELDASHNSI----- 217

Query: 482 MPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLER 541
                                 +   +      L  L L  N    +  +   +   L  
Sbjct: 218 --------------------NVVRGPV---NVELTILKLQHNNL--TDTAWLLNYPGLVE 252

Query: 542 LDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGE 601
           +D+S N+L  +I          LE L +SNNRL   +      +  L  L L  N+ +  
Sbjct: 253 VDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNH-LLH 309

Query: 602 IPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLK 661
           +  +  +   L  LYL  N +   +   L    TL+ + + +N+ +         R   +
Sbjct: 310 VERNQPQFDRLENLYLDHNSI-VTLK--LSTHHTLKNLTLSHNDWD-----CNSLRALFR 361

Query: 662 ILDLSNNSIFGTLPSCFSPASIEQ 685
             +++  ++      C     +E 
Sbjct: 362 --NVARPAVDDADQHCKIDYQLEH 383

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  128 bits (324), Expect = 4e-32
 Identities = 72/332 (21%), Positives = 127/332 (38%), Gaps = 25/332 (7%)

Query: 440 DLNSVNLSHLNLSG----EFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDV 495
           D+   N   +        + P  LL++   +E L L +  +             +  L +
Sbjct: 41  DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYM 100

Query: 496 FNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPE 555
             N  + ++P  +   +P L  L L RN  +      F +   L  L +SNN L   I +
Sbjct: 101 GFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIED 158

Query: 556 RMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGL 615
                  SL+ L LS+NRL  H+  +   + +L    +  N        +L+    +  L
Sbjct: 159 DTFQATTSLQNLQLSSNRLT-HV--DLSLIPSLFHANVSYNLL-----STLAIPIAVEEL 210

Query: 616 YLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLP 675
             S N +   +         L  + + +NNL     +       L  +DLS N +   + 
Sbjct: 211 DASHNSI-NVVRG--PVNVELTILKLQHNNLTDTAWLLNYPG--LVEVDLSYNELEKIMY 265

Query: 676 SCFSP-ASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYL 734
             F     +E++++S N++   L       P L  LDLS+N L   +     +  +L  L
Sbjct: 266 HPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 323

Query: 735 LLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 766
            L HN I   + +       ++ + LSHN+  
Sbjct: 324 YLDHNSIV-TLKLST--HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  126 bits (319), Expect = 2e-31
 Identities = 64/352 (18%), Positives = 126/352 (35%), Gaps = 40/352 (11%)

Query: 6   FTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLR 65
                  + +    + +   +       L     ++ L LND         +     +++
Sbjct: 41  DITLNNQKIVTFKNSTMRK-LPAAL---LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 96

Query: 66  HLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIP 125
            L +  N +   +      ++  L  L +  N + +L     F    KL TL +  + + 
Sbjct: 97  KLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLE 154

Query: 126 RIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQS 185
           RI+      +  +  SL+ L LS  +      +  L    +L    +         LL +
Sbjct: 155 RIEDD----TFQATTSLQNLQLSSNRLT----HVDLSLIPSLFHANVS------YNLLST 200

Query: 186 IASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVG--ESMPS 243
           +A   +++ L      +   + G        L  L +         N L       + P 
Sbjct: 201 LAIPIAVEELDASHNSIN-VVRGPV---NVELTILKL-------QHNNLTDTAWLLNYPG 249

Query: 244 LNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQ 303
           L  + L+ + L    I+     ++  L+ LYI +N L   L      + +L+VL  S N 
Sbjct: 250 LVEVDLSYNEL--EKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH 306

Query: 304 LTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTEN 355
           L  ++     +   L  LY+D+N +  +L   L+   +L+ L +S+N    N
Sbjct: 307 LL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCN 354

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  121 bits (306), Expect = 9e-30
 Identities = 71/364 (19%), Positives = 123/364 (33%), Gaps = 60/364 (16%)

Query: 240 SMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYA 299
           ++ +   ++  NS++    +    L     ++ L + D  + +   +  A   ++Q LY 
Sbjct: 43  TLNNQKIVTFKNSTMR--KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYM 100

Query: 300 SSNQLTGNISPG-LCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISS 358
             N +   + P     + LL  L ++ NDL         N   L  L +S N L   I  
Sbjct: 101 GFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIED 158

Query: 359 SSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLT 418
            +    TS++ L LS+N    + +S      +  L   N   N  +     +L     + 
Sbjct: 159 DTFQATTSLQNLQLSSNRLTHVDLS-----LIPSLFHANVSYNLLS-----TLAIPIAVE 208

Query: 419 SISLSG----YVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANN 474
            +  S      V G           +L  + L H NL+ +     L N   L  + L+ N
Sbjct: 209 ELDASHNSINVVRGPVNV-------ELTILKLQHNNLT-DTAW--LLNYPGLVEVDLSYN 258

Query: 475 SLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFA 534
            L                           I       +  L  L +S N    ++     
Sbjct: 259 EL-------------------------EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ 292

Query: 535 DMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLD 594
            +  L+ LD+S+N L   +  R       LE L L +N +     S       L  L L 
Sbjct: 293 PIPTLKVLDLSHNHLL-HVE-RNQPQFDRLENLYLDHNSIVTLKLS---THHTLKNLTLS 347

Query: 595 GNNF 598
            N++
Sbjct: 348 HNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  106 bits (267), Expect = 1e-24
 Identities = 56/360 (15%), Positives = 121/360 (33%), Gaps = 53/360 (14%)

Query: 34  LSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELD 93
           L        ++++    +         L++ + ++  ++ +   +    L+S   +E L+
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 94  MTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFK 153
           +    IE +     F     +  LY+G + I  +          ++P L  L L      
Sbjct: 76  LNDLQIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLER---- 126

Query: 154 GTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLK 213
               N      ++L   I                +   L  LSM +  L+  +    F  
Sbjct: 127 ----ND----LSSLPRGIF--------------HNTPKLTTLSMSNNNLE-RIEDDTFQA 163

Query: 214 FKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGL 273
             +L+ L +       +     +    +PSL   +++ + L+        L   + ++ L
Sbjct: 164 TTSLQNLQLS------SNRLTHVDLSLIPSLFHANVSYNLLST-------LAIPIAVEEL 210

Query: 274 YIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLP 333
               N +   +         L +L    N LT   +  L     L ++ +  N+L   + 
Sbjct: 211 DASHNSINV-VR--GPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY 265

Query: 334 LCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKL 393
                +  L  L +S N+L     +     + +++ L LS+NH   +  +      L  L
Sbjct: 266 HPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL 323

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 76.2 bits (188), Expect = 9e-15
 Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 20/170 (11%)

Query: 9   FQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLS 68
             +L  L L  NN+           L     L  + L+ N     ++     +  L  L 
Sbjct: 225 NVELTILKLQHNNL------TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278

Query: 69  LADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRID 128
           +++NRL  +++      +  L+ LD++ N + ++   ++     +L  LYL  + I  + 
Sbjct: 279 ISNNRLV-ALN-LYGQPIPTLKVLDLSHNHLLHV--ERNQPQFDRLENLYLDHNSIVTL- 333

Query: 129 GSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLH 178
                  + +  +LK L LSH  +     N     F N+    +D++D H
Sbjct: 334 ------KLSTHHTLKNLTLSHNDWDC---NSLRALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 73.9 bits (182), Expect = 6e-14
 Identities = 38/215 (17%), Positives = 75/215 (34%), Gaps = 28/215 (13%)

Query: 3   ASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLS 62
              F     L++L LS N +        ++ LS + +L    ++ N       S+L    
Sbjct: 158 DDTFQATTSLQNLQLSSNRL------THVD-LSLIPSLFHANVSYNLL-----STLAIPI 205

Query: 63  SLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGS 122
           ++  L  + N +N  +          L  L +  N + +            L  + L  +
Sbjct: 206 AVEELDASHNSIN-VVRG---PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYN 258

Query: 123 GIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQL 182
            + +I           +  L+ LY+S+ +     +N        L+ L L  S  H+  +
Sbjct: 259 ELEKIMYH----PFVKMQRLERLYISNNRL--VALNLYGQPIPTLKVLDL--SHNHLLHV 310

Query: 183 LQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNL 217
            ++   F  L++L +    +   L        KNL
Sbjct: 311 ERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLKNL 344

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 892
           +  ++ + L  N L+  +P  I     ++  L++S+NNL      TF     +++L LS 
Sbjct: 116 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174

Query: 893 NLLHGKIPPQLIVLNTLEVFKVAYNNLS 920
           N L   +   L  + +L    V+YN LS
Sbjct: 175 NRLT-HVDLSL--IPSLFHANVSYNLLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 19/88 (21%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 833 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 892
           +   ++ + L  N LT +    +     +  ++LS+N L   +   F  ++++E L +S 
Sbjct: 224 VNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281

Query: 893 NLLHGKIPPQLIVLNTLEVFKVAYNNLS 920
           N L   +      + TL+V  +++N+L 
Sbjct: 282 NRLV-ALNLYGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 14/110 (12%), Positives = 39/110 (35%), Gaps = 4/110 (3%)

Query: 663 LDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIP 722
           +D+    ++       +  + + V    + +     +++     +  L+L+   +   I 
Sbjct: 28  IDMQTQDVYFGFED-ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EID 85

Query: 723 NRI-DRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPP 771
                    +  L +  N I+   P     +  + ++ L  N+LS  +P 
Sbjct: 86  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPR 134

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.8 bits (109), Expect = 5e-05
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 892
              +  ++L+  ++  EI T    Y   I  L +  N +    P  F N+  +  L L  
Sbjct: 68  FRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126

Query: 893 NLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRA 927
           N L   +P  +      L    ++ NNL  +I D  
Sbjct: 127 NDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDT 160

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.3 bits (100), Expect = 7e-04
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
           + ++  +DLS N L   +        R+  L L HN++  T+    S    +++L LS+N
Sbjct: 294 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHN 349

Query: 894 LLH 896
              
Sbjct: 350 DWD 352

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  131 bits (330), Expect = 4e-32
 Identities = 79/506 (15%), Positives = 163/506 (32%), Gaps = 56/506 (11%)

Query: 269 HLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCE-LVLLRKLYIDNND 327
               L I  N + +     + +++ L++L  S N++   +   + +    L  L + +N 
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNK 80

Query: 328 LRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPL 387
           L   +        +L+ LD+S+N            +++ ++ L LS  H  +    + P+
Sbjct: 81  LV-KISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS--VLPI 135

Query: 388 FNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLS 447
            +L+  +     +  +T    +         + SL           F+         NL 
Sbjct: 136 AHLNISKVLL--VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 448 HLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVE 507
             N+     +       ++   L  N                  TL+     +   I + 
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNP------------KLSNLTLNNIETTWNSFIRIL 241

Query: 508 IGTYLPGLMELNLSRNAFNGSIPSSFAD-----MKMLERLDISNNQLTGEIPERMATGCF 562
              +   +   ++S     G +     D     +K L    + ++         +     
Sbjct: 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFS 300

Query: 563 SLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHL 622
           ++ I   + +  +         ++  + L    N     + E+      L  L L  N L
Sbjct: 301 NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360

Query: 623 --FGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQR-DSLKILDLSNNSIFGTLPSCFS 679
               KI      + +LQ + +  N++        C    SL  L++S+N +  T+  C  
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP 420

Query: 680 PASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHN 739
           P                          +  LDL  N +  SIP ++ +L  L  L +A N
Sbjct: 421 P-------------------------RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASN 454

Query: 740 YIKGEIPVQLCQLKEVRLIDLSHNNL 765
            +K        +L  ++ I L  N  
Sbjct: 455 QLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  126 bits (318), Expect = 1e-30
 Identities = 92/553 (16%), Positives = 179/553 (32%), Gaps = 107/553 (19%)

Query: 38  TNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGN 97
                L ++ N+ +    S +  LS LR L ++ NR+   +DI        LE LD++ N
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHN 79

Query: 98  AIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVV 157
            +  +           L  L L  +    +   K     G++  LK L LS T  +    
Sbjct: 80  KLVKI----SCHPTVNLKHLDLSFNAFDALPICKEF---GNMSQLKFLGLSTTHLE---- 128

Query: 158 NQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQ---------DCVLKGALHG 208
              +    +L    +           +           S+            +L  ++  
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT 188

Query: 209 QDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILD-QGLCQL 267
              L+  N++ +          +   ++  ++ P L+ L+L N     ++ +    L   
Sbjct: 189 VANLELSNIKCVLEDNKCSYFLSILAKL--QTNPKLSNLTLNNIETTWNSFIRILQLVWH 246

Query: 268 VHLQGLYIRDNDLRDGLPWCLA-----NMTSLQVLYASSNQLTGNISPGLCELVLLRKLY 322
             +    I +  L+  L +        ++ +L +    S+      S        +    
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306

Query: 323 IDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPI 382
              +  R    LC + ++    LD S N LT+     +  HLT +E LIL  N   ++  
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD-TVFENCGHLTELETLILQMNQLKELSK 365

Query: 383 SLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLN 442
             E    +  LQ                                             D++
Sbjct: 366 IAEMTTQMKSLQQL-------------------------------------------DIS 382

Query: 443 SVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQG 502
             ++S+    G+  +W      +L +L +++N L               T  +F      
Sbjct: 383 QNSVSYDEKKGDC-SWT----KSLLSLNMSSNIL---------------TDTIFRCL--- 419

Query: 503 HIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCF 562
                     P +  L+L  N    SIP     ++ L+ L++++NQL   +P+ +     
Sbjct: 420 ---------PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLT 468

Query: 563 SLEILALSNNRLQ 575
           SL+ + L  N   
Sbjct: 469 SLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  119 bits (300), Expect = 3e-28
 Identities = 91/450 (20%), Positives = 161/450 (35%), Gaps = 44/450 (9%)

Query: 6   FTPFQQLESLDLSWNNIAG-----CVQNESLERL------------SRLTNLKFLYLNDN 48
                +L  L +S N I          N+ LE L                NLK L L+ N
Sbjct: 41  ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFN 100

Query: 49  HFNN-SIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKD 107
            F+   I    G +S L+ L L+   L     +  +  L+  + L + G         +D
Sbjct: 101 AFDALPICKEFGNMSQLKFLGLSTTHLE-KSSVLPIAHLNISKVLLVLGE---TYGEKED 156

Query: 108 FRGLRKLNTLYLGGSGIPRIDGSKVLQ---------SIGSLPSLKTLYLSHTKFKGTVVN 158
             GL+  NT  L        +   +L           + ++  +                
Sbjct: 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKL 216

Query: 159 QKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDF-LKFKNL 217
           Q     +NL    ++ +     ++LQ +   T++ + S+ +  L+G L  +DF     +L
Sbjct: 217 QTNPKLSNLTLNNIETTWNSFIRILQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSL 275

Query: 218 EYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRD 277
           + L +  V  DV       + E   ++N  + T S      +      ++     L   +
Sbjct: 276 KALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR--MVHMLCPSKISPFLHLDFSN 333

Query: 278 NDLRDGLPWCLANMTSLQVLYASSNQLT--GNISPGLCELVLLRKLYIDNNDLRGSLPLC 335
           N L D +     ++T L+ L    NQL     I+    ++  L++L I  N +       
Sbjct: 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393

Query: 336 L-ANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQ 394
             +   SL  L++S N LT+ I       +     L L +N    IP  +  L  L +L 
Sbjct: 394 DCSWTKSLLSLNMSSNILTDTIFRCLPPRIK---VLDLHSNKIKSIPKQVVKLEALQELN 450

Query: 395 TFNGEINAQTESHYDSLTPKFQLTSISLSG 424
             + ++ +  +  +D LT    L  I L  
Sbjct: 451 VASNQLKSVPDGIFDRLT---SLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  117 bits (295), Expect = 1e-27
 Identities = 76/479 (15%), Positives = 154/479 (32%), Gaps = 35/479 (7%)

Query: 12  LESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLAD 71
              L++S N I           +  L+ L+ L ++ N       S       L +L L+ 
Sbjct: 23  TTILNISQNYI----SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78

Query: 72  NRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSK 131
           N+L   I     +   NL+ LD++ NA + L + K+F  + +L  L L  + + +     
Sbjct: 79  NKLV-KISC---HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134

Query: 132 V--LQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASF 189
           +  L     L  L   Y      +G                      L VS    +    
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194

Query: 190 TSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSL 249
           +++K +   +                 L  L +  ++   N+    +      ++ + S+
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254

Query: 250 TNSSLNK---HTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTG 306
           +N  L         D     L  L    +  +       +     +++ +   + +    
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314

Query: 307 NISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTE-NISSSSLMHLT 365
                  ++     L   NN L  ++     +LT L  L +  NQL E +  +     + 
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK 374

Query: 366 SIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSG- 424
           S+++L +S N                 L + N   N  T++ +  L P  ++  + L   
Sbjct: 375 SLQQLDISQNSVSYDEKK-GDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSN 431

Query: 425 ---YVDGGTFPEFLYHQHDLNSVNLSHLNLSG----EFPNWLLENNTNLETLLLANNSL 476
               +                   L  LN++       P+ + +  T+L+ + L  N  
Sbjct: 432 KIKSIPKQVV----------KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  102 bits (256), Expect = 8e-23
 Identities = 90/563 (15%), Positives = 165/563 (29%), Gaps = 106/563 (18%)

Query: 87  SNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLY 146
                L+++ N I  L    D   L KL  L +  + I  +D S           L+ L 
Sbjct: 21  QKTTILNISQNYISELW-TSDILSLSKLRILIISHNRIQYLDIS----VFKFNQELEYLD 75

Query: 147 LSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGAL 206
           LSH        N+       L ++                    +LKHL +         
Sbjct: 76  LSH--------NK-------LVKISCH--------------PTVNLKHLDLSFNAFDALP 106

Query: 207 HGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQ 266
             ++F     L++L +        T+  +     +  LN   +       +    +    
Sbjct: 107 ICKEFGNMSQLKFLGLS------TTHLEKSSVLPIAHLNISKVLLVLGETY-GEKEDPEG 159

Query: 267 LVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNN 326
           L       +      +     + +++   V     + +   +    C   L     +  N
Sbjct: 160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN 219

Query: 327 DLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEP 386
               +L L     T       S+ ++ + +  +++ + +     +     F     S   
Sbjct: 220 PKLSNLTLNNIETT-----WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTS 274

Query: 387 LFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNL 446
           L  LS  Q  +          Y+  +    +   +                   ++   +
Sbjct: 275 LKALSIHQVVSDVFGFPQSYIYEIFS---NMNIKNF-----------------TVSGTRM 314

Query: 447 SHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPV 506
            H+    +         +    L  +NN L                 D            
Sbjct: 315 VHMLCPSKI--------SPFLHLDFSNNLL----------------TDTVFENCGH---- 346

Query: 507 EIGTYLPGLMELNLSRNAFN--GSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSL 564
                L  L  L L  N       I      MK L++LDIS N ++ +  +   +   SL
Sbjct: 347 -----LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401

Query: 565 EILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFG 624
             L +S+N L   IF        +  L L  N  I  IP+ + K   L+ L ++ N L  
Sbjct: 402 LSLNMSSNILTDTIFRC--LPPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQL-K 457

Query: 625 KIPR-WLGNLPTLQYIIMPNNNL 646
            +P      L +LQ I +  N  
Sbjct: 458 SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 98.0 bits (244), Expect = 3e-21
 Identities = 69/461 (14%), Positives = 137/461 (29%), Gaps = 69/461 (14%)

Query: 318 LRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHF 377
              L I  N +       + +L+ LR+L +S+N++   +  S       +E L LS+N  
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQY-LDISVFKFNQELEYLDLSHNKL 81

Query: 378 FQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYH 437
            +I     P  NL  L                                            
Sbjct: 82  VKISC--HPTVNLKHL-------------------------------------------- 95

Query: 438 QHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFN 497
             DL+      L +  EF N      + L+ L L+   L    +  +     L    V  
Sbjct: 96  --DLSFNAFDALPICKEFGNM-----SQLKFLGLSTTHLE---KSSVLPIAHLNISKVLL 145

Query: 498 NFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERM 557
              + +   E    L      +L              D+ +    ++  + +   + +  
Sbjct: 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK 205

Query: 558 ATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYL 617
            +   S+     +N +L          L N+ T        +  +  +    + +  + L
Sbjct: 206 CSYFLSILAKLQTNPKLS------NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259

Query: 618 SDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSC 677
                F        +L  L    + ++    P    +    ++ I + + +        C
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319

Query: 678 FS-PASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRI---DRLPQLNY 733
            S  +    +  S N +   +         L TL L  N L   +        ++  L  
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQ 378

Query: 734 LLLAHNYIKGEIPVQLC-QLKEVRLIDLSHNNLSGRIPPCL 773
           L ++ N +  +     C   K +  +++S N L+  I  CL
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 84.1 bits (208), Expect = 8e-17
 Identities = 64/415 (15%), Positives = 126/415 (30%), Gaps = 53/415 (12%)

Query: 517 ELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQG 576
            LN+S+N  +    S    +  L  L IS+N++   +   +      LE L LS+N+L  
Sbjct: 25  ILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVK 83

Query: 577 HIFSEKFNLTNLMTLQLDGNNFIGEIPES--LSKCYMLRGLYLSDNHLFGKIPRWLGNLP 634
                     NL  L L  N F   +P          L+ L LS  HL       + +L 
Sbjct: 84  ISCH---PTVNLKHLDLSFNAF-DALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139

Query: 635 TLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIE 694
             + +++                + L+  +  +  I       F       + +S   + 
Sbjct: 140 ISKVLLVLGETYGEKEDP-----EGLQDFNTESLHIVFPTNKEFHF----ILDVSVKTVA 190

Query: 695 GRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYI-KGEIPVQLCQLK 753
               S I             + L     N       LN +    N   +    V    + 
Sbjct: 191 NLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250

Query: 754 EVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMG 813
              + ++               TSL      +V        ++ +Y              
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI------------ 298

Query: 814 KEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTG 873
                                ++M+  + + +            ++    L+ S+N LT 
Sbjct: 299 --------------------FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD 338

Query: 874 TIPTTFSNLKQIESLDLSYNLLHGKIPPQLIV---LNTLEVFKVAYNNLSGKIPD 925
           T+     +L ++E+L L  N L  ++     +   + +L+   ++ N++S     
Sbjct: 339 TVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 83.8 bits (207), Expect = 8e-17
 Identities = 80/507 (15%), Positives = 148/507 (29%), Gaps = 80/507 (15%)

Query: 442 NSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQ 501
             V+ S   L    P  L         L ++ N +   +   I S  KL  L + +N  Q
Sbjct: 3   FLVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ 58

Query: 502 GHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGC 561
            ++ + +  +   L  L+LS N     I         L+ LD+S N     +P       
Sbjct: 59  -YLDISVFKFNQELEYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFD-ALPI---CKE 110

Query: 562 F----SLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEI-PESLSKCYMLR-GL 615
           F     L+ L LS   L+        +L     L + G  +  +  PE L         +
Sbjct: 111 FGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHI 170

Query: 616 YLSDNHLFGKIPRW------------LGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKIL 663
               N  F  I               +  +          + L            +L  +
Sbjct: 171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI 230

Query: 664 DLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPH----------------- 706
           + + NS    +       ++    +S  K++G+L+    D                    
Sbjct: 231 ETTWNSFI-RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289

Query: 707 ------------LVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKE 754
                       +   + + +           ++    +L  ++N +   +      L E
Sbjct: 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349

Query: 755 VRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGK 814
           +  + L  N L   +        + E      +   +   + SV                
Sbjct: 350 LETLILQMNQLK-ELSK------IAEMTTQMKSLQQLDISQNSV-------SYDEKKGDC 395

Query: 815 EETVQFTTKNMSY-----YYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHN 869
             T    + NMS           +   +  +DL  NK+   IP Q+  L  +  LN++ N
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASN 454

Query: 870 NLTGTIPTTFSNLKQIESLDLSYNLLH 896
            L       F  L  ++ + L  N   
Sbjct: 455 QLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.4 bits (110), Expect = 4e-05
 Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 4/98 (4%)

Query: 833 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 892
           +    + +++S N ++    + I  L+++  L +SHN +     + F   +++E LDLS+
Sbjct: 19  LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78

Query: 893 NLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFS 930
           N L  KI         L+   +++N     +P   +F 
Sbjct: 79  NKLV-KISCHP--TVNLKHLDLSFNAFD-ALPICKEFG 112

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 8/96 (8%)

Query: 2   NASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGL 61
                +  + L SL++S N +   +             +K L L+ N    SI   +  L
Sbjct: 391 KKGDCSWTKSLLSLNMSSNILTDTIFR------CLPPRIKVLDLHSNKI-KSIPKQVVKL 443

Query: 62  SSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGN 97
            +L+ L++A N+L  S+     + L++L+++ +  N
Sbjct: 444 EALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  126 bits (319), Expect = 6e-32
 Identities = 65/348 (18%), Positives = 112/348 (32%), Gaps = 43/348 (12%)

Query: 437 HQHDLNSVNLSHLNLSGEFP-NWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDV 495
           H H  +S    +L   G        +  +  +    A+ + + S     +S+        
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN-NPQIETR 63

Query: 496 FNNFFQGHIPVEIGT-YLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIP 554
                +      +     PG + L L         P     +  L+ + I    L  E+P
Sbjct: 64  TGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELP 120

Query: 555 ERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYM--- 611
           + M      LE L L+ N L+  + +   +L  L  L +     + E+PE L+       
Sbjct: 121 DTMQQ-FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 612 ------LRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDL 665
                 L+ L L    +   +P  + NL  L+ + + N+ L   +         L+ LDL
Sbjct: 179 HQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDL 236

Query: 666 SNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRI 725
              +     P  F                G           L  L L   S   ++P  I
Sbjct: 237 RGCTALRNYPPIF----------------GGRAP-------LKRLILKDCSNLLTLPLDI 273

Query: 726 DRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCL 773
            RL QL  L L        +P  + QL    +I +   +L  ++    
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP-PHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  113 bits (286), Expect = 1e-27
 Identities = 57/365 (15%), Positives = 102/365 (27%), Gaps = 55/365 (15%)

Query: 284 LPWCLANMTSLQVLY-ASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSL 342
                 + +  + LY   S  L          L   ++ Y  + +         AN  + 
Sbjct: 4   SHHHHHHSSGRENLYFQGSTALRPYHD----VLSQWQRHYNADRNRW-HSAWRQANSNNP 58

Query: 343 RVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINA 402
           ++   +   L                 L L +    Q P   +  F LS LQ    +   
Sbjct: 59  QIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFP---DQAFRLSHLQHMTIDAA- 114

Query: 403 QTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLEN 462
                         L  +           P+ +     L ++ L+   L    P   + +
Sbjct: 115 -------------GLMEL-----------PDTMQQFAGLETLTLARNPLR-ALPAS-IAS 148

Query: 463 NTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSR 522
              L  L +           P                       E    L  L  L L  
Sbjct: 149 LNRLRELSIRACPELTEL--P-------------EPLASTDASGEHQ-GLVNLQSLRLEW 192

Query: 523 NAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEK 582
                S+P+S A+++ L+ L I N+ L+  +   +      LE L L       +     
Sbjct: 193 TGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIH-HLPKLEELDLRGCTALRNYPPIF 249

Query: 583 FNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMP 642
                L  L L   + +  +P  + +   L  L L       ++P  +  LP    I++P
Sbjct: 250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309

Query: 643 NNNLE 647
            +   
Sbjct: 310 PHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  113 bits (284), Expect = 2e-27
 Identities = 55/356 (15%), Positives = 110/356 (30%), Gaps = 67/356 (18%)

Query: 12  LESLDLSWNNIAGCVQNESLERL-SRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLA 70
            E+L    +         +L      L+  +  Y  D +  +S        ++ +  +  
Sbjct: 14  RENLYFQGST--------ALRPYHDVLSQWQRHYNADRNRWHSA-WRQANSNNPQIETRT 64

Query: 71  DNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGS 130
              L  + D+    +      L++    +     P     L  L  + +  +G+      
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLPQF--PDQAFRLSHLQHMTIDAAGL-----M 117

Query: 131 KVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFT 190
           ++  ++     L+TL L+    +                            L  SIAS  
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLR---------------------------ALPASIASLN 150

Query: 191 SLKHLSMQDC--------VLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGES-- 240
            L+ LS++ C         L       +     NL+ L +           ++ +  S  
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL-------EWTGIRSLPASIA 203

Query: 241 -MPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYA 299
            + +L  L + NS L   + L   +  L  L+ L +R        P        L+ L  
Sbjct: 204 NLQNLKSLKIRNSPL---SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260

Query: 300 SS-NQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTE 354
              + L   +   +  L  L KL +        LP  +A L +  ++ V  +   +
Sbjct: 261 KDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  111 bits (280), Expect = 8e-27
 Identities = 49/324 (15%), Positives = 94/324 (29%), Gaps = 30/324 (9%)

Query: 360 SLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTS 419
              H +  E L    +    +    + L    +    +                      
Sbjct: 7   HHHHSSGRENLYFQGS--TALRPYHDVLSQWQRHYNADRNRWHSAWRQ-----ANSNNPQ 59

Query: 420 ISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSG----EFPNWLLENNTNLETLLLANNS 475
           I            + L    D        L L      +FP+      ++L+ + +    
Sbjct: 60  IETRTGRALKATADLL---EDATQPGRVALELRSVPLPQFPDQA-FRLSHLQHMTIDAAG 115

Query: 476 LFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFA- 534
           L       +     L TL +  N  +  +P  I   L  L EL++        +P   A 
Sbjct: 116 L-MELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRLRELSIRACPELTELPEPLAS 172

Query: 535 --------DMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLT 586
                    +  L+ L +    +   +P  +A    +L+ L + N+ L   +     +L 
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLS-ALGPAIHHLP 229

Query: 587 NLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNL 646
            L  L L G   +   P        L+ L L D      +P  +  L  L+ + +     
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289

Query: 647 EGPIPIEFCQRDSLKILDLSNNSI 670
              +P    Q  +  I+ +  +  
Sbjct: 290 LSRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  104 bits (262), Expect = 2e-24
 Identities = 50/344 (14%), Positives = 103/344 (29%), Gaps = 60/344 (17%)

Query: 584 NLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPN 643
           + +    L   G+  +    + LS+         +  H   +      N    Q      
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTG 65

Query: 644 NNLEG-PIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIH 702
             L+     +E   +     L+L +  +    P                    RL     
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPL-PQFPDQA----------------FRLS---- 104

Query: 703 DNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSH 762
              HL  + +    L   +P+ + +   L  L LA N ++  +P  +  L  +R + +  
Sbjct: 105 ---HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159

Query: 763 NNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTT 822
                 +P  L +T  +  + G V   S+      +     LP      +          
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS---LP----ASIAN-------- 204

Query: 823 KNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNL 882
                      L ++  + +  + L+  +   I +L ++  L+L         P  F   
Sbjct: 205 -----------LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252

Query: 883 KQIESLDLS-YNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD 925
             ++ L L   + L   +P  +  L  LE   +       ++P 
Sbjct: 253 APLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  103 bits (259), Expect = 4e-24
 Identities = 59/389 (15%), Positives = 105/389 (26%), Gaps = 78/389 (20%)

Query: 248 SLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGN 307
              N      T L      L   Q  Y  D +      W  AN  + Q+   +   L   
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWH-SAWRQANSNNPQIETRTGRALKAT 71

Query: 308 I-SPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTS 366
                         L + +  L    P     L+ L+ + +    L E     ++     
Sbjct: 72  ADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME--LPDTMQQFAG 128

Query: 367 IEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYV 426
           +E L L+ N    +P S+  L  L +L                                 
Sbjct: 129 LETLTLARNPLRALPASIASLNRLREL--------------------------------- 155

Query: 427 DGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHS 486
                             ++       E P  L   + + E   L N             
Sbjct: 156 ------------------SIRACPELTELPEPLASTDASGEHQGLVN------------- 184

Query: 487 HQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISN 546
              L +L +     +  +P  I   L  L  L +  +  + ++  +   +  LE LD+  
Sbjct: 185 ---LQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRG 238

Query: 547 NQLTGEIPERMATGCFSLEILALSN-NRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPES 605
                  P     G   L+ L L + + L   +  +   LT L  L L G   +  +P  
Sbjct: 239 CTALRNYPPIF-GGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

Query: 606 LSKCYMLRGLYLSDNHLFGKIPRWLGNLP 634
           +++      + +  +             P
Sbjct: 297 IAQLPANCIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.4 bits (186), Expect = 1e-14
 Identities = 43/201 (21%), Positives = 73/201 (36%), Gaps = 27/201 (13%)

Query: 10  QQLESLDLSWNNIAGCVQNESL-ERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLS 68
             L+ + +    +        L + + +   L+ L L  N    ++ +S+  L+ LR LS
Sbjct: 104 SHLQHMTIDAAGL------MELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELS 156

Query: 69  LADNRLNGSI--------DIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLG 120
           +        +               L NL+ L +    I +L  P     L+ L +L + 
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL--PASIANLQNLKSLKIR 214

Query: 121 GSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELIL-DESDLHV 179
            S +     S +  +I  LP L+ L L                   L+ LIL D S+L  
Sbjct: 215 NSPL-----SALGPAIHHLPKLEELDLRGCT-ALRNYPPIFGGRAPLKRLILKDCSNL-- 266

Query: 180 SQLLQSIASFTSLKHLSMQDC 200
             L   I   T L+ L ++ C
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGC 287

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.8 bits (169), Expect = 2e-12
 Identities = 45/213 (21%), Positives = 71/213 (33%), Gaps = 42/213 (19%)

Query: 9   FQQLESLDLSWNNIAGCVQNESL-ERLSRLTNLKFLYLNDNH---------FNNSIFSSL 58
           F  LE+L L+ N +       +L   ++ L  L+ L +              +       
Sbjct: 126 FAGLETLTLARNPL------RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179

Query: 59  GGLSSLRHLSLADNRLNG---SIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLN 115
            GL +L+ L L    +     SI      +L NL+ L +  + +  L        L KL 
Sbjct: 180 QGLVNLQSLRLEWTGIRSLPASI-----ANLQNLKSLKIRNSPLSAL--GPAIHHLPKLE 232

Query: 116 TLYLGG----SGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELI 171
            L L G       P           G    LK L L         +   +H  T LE+L 
Sbjct: 233 ELDLRGCTALRNYP--------PIFGGRAPLKRLILKDCS-NLLTLPLDIHRLTQLEKLD 283

Query: 172 LDE-SDLHVSQLLQSIASFTSLKHLSMQDCVLK 203
           L    +L  S+L   IA   +   + +   +  
Sbjct: 284 LRGCVNL--SRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.9 bits (125), Expect = 5e-07
 Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 834 LTSMSGIDLS-CNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 892
           L  +  +DL  C  L    P   G    +  L L   +   T+P     L Q+E LDL  
Sbjct: 228 LPKLEELDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

Query: 893 NLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDR 926
            +   ++P  +  L    +  V   +L  ++   
Sbjct: 287 CVNLSRLPSLIAQLPANCIILV-PPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.2 bits (113), Expect = 2e-05
 Identities = 16/94 (17%), Positives = 27/94 (28%), Gaps = 7/94 (7%)

Query: 10  QQLESLDLSWNNIAGCVQNESL-ERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLS 68
            +LE LDL            +          LK L L D     ++   +  L+ L  L 
Sbjct: 229 PKLEELDLRGCT-----ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283

Query: 69  LADNRLNGSIDIKGLNSLSNLEELDMTGNAIENL 102
           L        +    +  L     + +  +    L
Sbjct: 284 LRGCVNLSRLP-SLIAQLPANCIILVPPHLQAQL 316

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  129 bits (326), Expect = 9e-32
 Identities = 83/371 (22%), Positives = 140/371 (37%), Gaps = 71/371 (19%)

Query: 9   FQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLS 68
             +   LDL  N I    Q+E     +   +L+ L LN+N  +     +   L +LR L 
Sbjct: 31  PTETRLLDLGKNRIKTLNQDE----FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLG 86

Query: 69  LADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRID 128
           L  NRL   I +     LSNL +LD++ N I  L +   F+ L  L +L +G + +  I 
Sbjct: 87  LRSNRLK-LIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSLEVGDNDLVYIS 144

Query: 129 GSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIAS 188
                ++   L SL+ L L       ++  + L +   L  L L   +++          
Sbjct: 145 H----RAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN---------- 189

Query: 189 FTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLS 248
                           A+    F +   L+ L++                          
Sbjct: 190 ----------------AIRDYSFKRLYRLKVLEI-------------------------- 207

Query: 249 LTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWC-LANMTSLQVLYASSNQLTGN 307
              S       +       ++L  L I   +L   +P+  + ++  L+ L  S N ++  
Sbjct: 208 ---SHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPIS-T 262

Query: 308 ISPG-LCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTS 366
           I    L EL+ L+++ +    L    P     L  LRVL+VS NQLT  +  S    + +
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGN 321

Query: 367 IEELILSNNHF 377
           +E LIL +N  
Sbjct: 322 LETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  125 bits (316), Expect = 2e-30
 Identities = 64/304 (21%), Positives = 127/304 (41%), Gaps = 14/304 (4%)

Query: 468 TLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNG 527
            +L           +P     +   LD+  N  +  +  +     P L EL L+ N  + 
Sbjct: 15  AVLCHRKRFV---AVPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSA 70

Query: 528 SIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKF-NLT 586
             P +F ++  L  L + +N+L   IP  + TG  +L  L +S N++   +    F +L 
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLY 128

Query: 587 NLMTLQLDGNNFIGEIPE-SLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNN 645
           NL +L++  N+ +  I   + S    L  L L   +L       L +L  L  + + + N
Sbjct: 129 NLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187

Query: 646 LEGPIPIEFCQRDSLKILDLSNNSIFGTL-PSCFSPASIEQVHLSKNKIEGRLESIIHDN 704
           +       F +   LK+L++S+     T+ P+C    ++  + ++   +       +   
Sbjct: 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247

Query: 705 PHLVTLDLSYNSLHGSIPNRI-DRLPQLNYLLLAHNYIKGEIPVQ-LCQLKEVRLIDLSH 762
            +L  L+LSYN +  +I   +   L +L  + L    +   +       L  +R++++S 
Sbjct: 248 VYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSG 305

Query: 763 NNLS 766
           N L+
Sbjct: 306 NQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  124 bits (313), Expect = 4e-30
 Identities = 64/389 (16%), Positives = 123/389 (31%), Gaps = 97/389 (24%)

Query: 340 TSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGE 399
           T  R+LD+  N++   ++         +EEL L+ N    +                   
Sbjct: 32  TETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVE------------------ 72

Query: 400 INAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWL 459
                                           P    +  +L ++ L    L    P  +
Sbjct: 73  --------------------------------PGAFNNLFNLRTLGLRSNRLK-LIPLGV 99

Query: 460 LENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELN 519
               +NL  L ++ N +                  + +  FQ          L  L  L 
Sbjct: 100 FTGLSNLTKLDISENKIV----------------ILLDYMFQD---------LYNLKSLE 134

Query: 520 LSRNAFNGSIPS-SFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHI 578
           +  N     I   +F+ +  LE+L +    LT  IP    +    L +L L +  +   I
Sbjct: 135 VGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN-AI 191

Query: 579 FSEKF-NLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRW-LGNLPTL 636
               F  L  L  L++    ++  +  +      L  L ++  +L   +P   + +L  L
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYL 250

Query: 637 QYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSI-------FGTLPSCFSPASIEQVHLS 689
           +++ +  N +         +   L+ + L    +       F  L        +  +++S
Sbjct: 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY------LRVLNVS 304

Query: 690 KNKIEGRLESIIHDNPHLVTLDLSYNSLH 718
            N++    ES+ H   +L TL L  N L 
Sbjct: 305 GNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  119 bits (301), Expect = 1e-28
 Identities = 68/359 (18%), Positives = 118/359 (32%), Gaps = 66/359 (18%)

Query: 318 LRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHF 377
            R L +  N ++       A+   L  L+++ N ++  +   +  +L ++  L L +N  
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRL 92

Query: 378 FQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYH 437
             IP+ +     LS L   +   N              ++  +          F      
Sbjct: 93  KLIPLGV--FTGLSNLTKLDISEN--------------KIVIL------LDYMF------ 124

Query: 438 QHDLNSVNLSHLNLSG----EFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATL 493
             DL   NL  L +         +       +LE L L   +L                 
Sbjct: 125 -QDL--YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL----------------- 164

Query: 494 DVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEI 553
                     IP E  ++L GL+ L L     N     SF  +  L+ L+IS+      +
Sbjct: 165 --------TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216

Query: 554 PERMATGCFSLEILALSNNRLQGHIFSEKF-NLTNLMTLQLDGNNFIGEIPE-SLSKCYM 611
                 G  +L  L++++  L   +      +L  L  L L  N  I  I    L +   
Sbjct: 217 TPNCLYGL-NLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLR 273

Query: 612 LRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSI 670
           L+ + L    L    P     L  L+ + +  N L       F    +L+ L L +N +
Sbjct: 274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  119 bits (300), Expect = 2e-28
 Identities = 60/264 (22%), Positives = 106/264 (40%), Gaps = 11/264 (4%)

Query: 513 PGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNN 572
                L+L +N         FA    LE L+++ N ++  +        F+L  L L +N
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSN 90

Query: 573 RLQGHIFSEKF-NLTNLMTLQLDGNNFIGEIPE-SLSKCYMLRGLYLSDNHLFGKIPRWL 630
           RL+  I    F  L+NL  L +  N  I  + +      Y L+ L + DN L     R  
Sbjct: 91  RLK-LIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF 148

Query: 631 GNLPTLQYIIMPNNNLEGPIPIE-FCQRDSLKILDLSNNSIFGTLPSCFSP-ASIEQVHL 688
             L +L+ + +   NL   IP E       L +L L + +I       F     ++ + +
Sbjct: 149 SGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207

Query: 689 SKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNR-IDRLPQLNYLLLAHNYIKGEIPV 747
           S       +        +L +L +++ +L  ++P   +  L  L +L L++N I      
Sbjct: 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGS 266

Query: 748 QLCQLKEVRLIDLSHNNLSGRIPP 771
            L +L  ++ I L    L+  + P
Sbjct: 267 MLHELLRLQEIQLVGGQLA-VVEP 289

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  118 bits (298), Expect = 4e-28
 Identities = 68/342 (19%), Positives = 122/342 (35%), Gaps = 48/342 (14%)

Query: 87  SNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLY 146
           +    LD+  N I+ L    +F     L  L L  + +  ++      +  +L +L+TL 
Sbjct: 32  TETRLLDLGKNRIKTLN-QDEFASFPHLEELELNENIVSAVEP----GAFNNLFNLRTLG 86

Query: 147 LSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGAL 206
           L   + K  +        +NL +L + E+ + +                          L
Sbjct: 87  LRSNRLK-LIPLGVFTGLSNLTKLDISENKIVI--------------------------L 119

Query: 207 HGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGE----SMPSLNFLSLTNSSLNKHTILDQ 262
               F    NL+ L++G        N L  +       + SL  L+L   +L   +I  +
Sbjct: 120 LDYMFQDLYNLKSLEVGD-------NDLVYISHRAFSGLNSLEQLTLEKCNL--TSIPTE 170

Query: 263 GLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLY 322
            L  L  L  L +R  ++     +    +  L+VL  S       ++P     + L  L 
Sbjct: 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230

Query: 323 IDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPI 382
           I + +L     L + +L  LR L++SYN ++  I  S L  L  ++E+ L       +  
Sbjct: 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST-IEGSMLHELLRLQEIQLVGGQLAVVE- 288

Query: 383 SLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSG 424
                  L+ L+  N   N  T            L ++ L  
Sbjct: 289 -PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  117 bits (296), Expect = 6e-28
 Identities = 69/331 (20%), Positives = 119/331 (35%), Gaps = 48/331 (14%)

Query: 2   NASLFTPFQQLESLDLSWNNIAGCVQNESLER--LSRLTNLKFLYLNDNHFNNSIFSSLG 59
           N   F  F  LE L+L+ N +       ++E    + L NL+ L L  N           
Sbjct: 48  NQDEFASFPHLEELELNENIV------SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101

Query: 60  GLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYL 119
           GLS+L  L +++N++   +       L NL+ L++  N +  +   + F GL  L  L L
Sbjct: 102 GLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYI-SHRAFSGLNSLEQLTL 159

Query: 120 GGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHV 179
               +  I      +++  L  L  L L H      + +        L+ L +      +
Sbjct: 160 EKCNLTSIPT----EALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPY-L 213

Query: 180 SQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGE 239
             +  +     +L  LS+  C L  A+          L +L++       + N +  +  
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNL-------SYNPISTIEG 265

Query: 240 SMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYA 299
           SM       L                    LQ + +    L    P+    +  L+VL  
Sbjct: 266 SM----LHELLR------------------LQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303

Query: 300 SSNQLTGNISPGLCE-LVLLRKLYIDNNDLR 329
           S NQLT  +   +   +  L  L +D+N L 
Sbjct: 304 SGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 97.9 bits (244), Expect = 2e-21
 Identities = 45/233 (19%), Positives = 92/233 (39%), Gaps = 10/233 (4%)

Query: 542 LDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKF-NLTNLMTLQLDGNNFIG 600
           +     +    +PE + T      +L L  NR++  +  ++F +  +L  L+L+ N  + 
Sbjct: 16  VLCHRKRFV-AVPEGIPT---ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENI-VS 69

Query: 601 EIPE-SLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDS 659
            +   + +  + LR L L  N L          L  L  + +  N +   +   F    +
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129

Query: 660 LKILDLSNNSIFGTLPSCFSP-ASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLH 718
           LK L++ +N +       FS   S+EQ+ L K  +       +     L+ L L + +++
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189

Query: 719 GSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPP 771
                   RL +L  L ++H      +         +  + ++H NL+  +P 
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPY 241

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.8 bits (127), Expect = 4e-07
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 3/95 (3%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 892
           L S+  + L    LT  IPT+   +L  +  L L H N+      +F  L +++ L++S+
Sbjct: 151 LNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209

Query: 893 NLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA 927
                 + P  +    L    + + NL+  +P  A
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLA 243

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 5/96 (5%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 892
           L ++  + L  N+L   IP  +   L+ +  L++S N +   +   F +L  ++SL++  
Sbjct: 79  LFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137

Query: 893 NLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRA 927
           N L   I  +    LN+LE   +   NL+  IP  A
Sbjct: 138 NDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEA 171

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 8e-06
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 3/96 (3%)

Query: 833 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 892
           I T    +DL  N++      +      +  L L+ N ++   P  F+NL  + +L L  
Sbjct: 30  IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89

Query: 893 NLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRA 927
           N L   IP  +   L+ L    ++ N +   + D  
Sbjct: 90  NRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYM 123

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 18/126 (14%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
           L  +  +++S       +     Y   + +L+++H NLT        +L  +  L+LSYN
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258

Query: 894 LLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRA---------------QFSTFEEDSY 937
            +   I   ++  L  L+  ++    L+  +   A               Q +T EE  +
Sbjct: 259 PIS-TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVF 316

Query: 938 EGNPFL 943
                L
Sbjct: 317 HSVGNL 322

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  121 bits (305), Expect = 3e-30
 Identities = 53/262 (20%), Positives = 103/262 (39%), Gaps = 17/262 (6%)

Query: 507 EIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEI 566
           EI           ++ ++   ++ S       ++ LD+S N L+ +I          LE+
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 567 LALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKI 626
           L LS+N L      +  +L+ L TL L+ N       + L     +  L+ ++N++  ++
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-SRV 114

Query: 627 PRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSP--ASIE 684
                     + I + NN +     ++   R  ++ LDL  N I     +  +    ++E
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 685 QVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGE 744
            ++L  N I   ++  +     L TLDLS N L   +         + ++ L +N +   
Sbjct: 173 HLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-L 228

Query: 745 IPVQLCQLKEVRLIDLSHNNLS 766
           I   L   + +   DL  N   
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  118 bits (297), Expect = 4e-29
 Identities = 55/309 (17%), Positives = 107/309 (34%), Gaps = 41/309 (13%)

Query: 459 LLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMEL 518
           + +N    +   + ++SL                               +      + EL
Sbjct: 5   IKQNGNRYKIEKVTDSSL-------------------------KQALASLRQSAWNVKEL 39

Query: 519 NLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHI 578
           +LS N  +    +  A    LE L++S+N L  E  +       +L  L L+NN +    
Sbjct: 40  DLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLD--LESLSTLRTLDLNNNYV---- 92

Query: 579 FSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQY 638
             E     ++ TL    NN I  +  S  +    + +YL++N +        G    +QY
Sbjct: 93  -QELLVGPSIETLHAANNN-ISRVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQY 148

Query: 639 IIMPNNNLEG-PIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRL 697
           + +  N ++           D+L+ L+L  N I+  +      A ++ + LS NK+   +
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FM 206

Query: 698 ESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRL 757
                    +  + L  N L   I   +     L +  L  N       ++    K  R+
Sbjct: 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRV 264

Query: 758 IDLSHNNLS 766
             ++   + 
Sbjct: 265 QTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  114 bits (288), Expect = 6e-28
 Identities = 55/361 (15%), Positives = 113/361 (31%), Gaps = 77/361 (21%)

Query: 37  LTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTG 96
               K   + D+    ++ S      +++ L L+ N L+  I    L   + LE L+++ 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 97  NAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTV 156
           N +       D   L  L TL L  + +         Q +   PS++TL+ ++       
Sbjct: 68  NVLYET---LDLESLSTLRTLDLNNNYV---------QELLVGPSIETLHAAN------- 108

Query: 157 VNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKN 216
                    N+  +              S +     K++ + +  +   L   D      
Sbjct: 109 --------NNISRV--------------SCSRGQGKKNIYLANNKITM-LRDLDEGCRSR 145

Query: 217 LEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIR 276
           ++YLD+                     LN +     ++N   +          L+ L ++
Sbjct: 146 VQYLDL--------------------KLNEI----DTVNFAELAA----SSDTLEHLNLQ 177

Query: 277 DNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCL 336
            N + D +         L+ L  SSN+L   + P       +  + + NN L   +   L
Sbjct: 178 YNFIYD-VK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKAL 233

Query: 337 ANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTF 396
               +L   D+  N                ++ +        ++    E    +  L  +
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK--KLTGQNEEECTVPTLGHY 291

Query: 397 N 397
            
Sbjct: 292 G 292

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  108 bits (273), Expect = 6e-26
 Identities = 61/357 (17%), Positives = 119/357 (33%), Gaps = 51/357 (14%)

Query: 267 LVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNN 326
               +   + D+ L+  L     +  +++ L  S N L+   +  L     L  L + +N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 327 DLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEP 386
            L  +L   L +L++LR LD++ N + E      L+   SIE L  +NN+  ++  S   
Sbjct: 69  VLYETLD--LESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNISRVSCSR-- 118

Query: 387 LFNLSKLQ-TFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVN 445
                 +    N                  ++T +                 +  +  ++
Sbjct: 119 GQGKKNIYLANN------------------KITMLR----------DLDEGCRSRVQYLD 150

Query: 446 LSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIP 505
           L    +       L  ++  LE L L  N +            KL TLD+ +N     + 
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNKLA-FMG 207

Query: 506 VEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLE 565
            E      G+  ++L  N     I  +    + LE  D+  N           +    ++
Sbjct: 208 PEFQ-SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265

Query: 566 ILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHL 622
            +A    +    +  +      + TL   G     ++P      +  R + L  +H 
Sbjct: 266 TVAKQTVK---KLTGQNEEECTVPTLGHYGAYCCEDLPAP----FADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  107 bits (270), Expect = 1e-25
 Identities = 49/252 (19%), Positives = 100/252 (39%), Gaps = 17/252 (6%)

Query: 528 SIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTN 587
           +I     +    +   ++++ L  +    +    ++++ L LS N L     ++    T 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 588 LMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLE 647
           L  L L  N  + E  + L     LR L L++N++     + L   P+++ +   NNN+ 
Sbjct: 60  LELLNLSSNV-LYETLD-LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS 112

Query: 648 GPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSP-ASIEQVHLSKNKIEG-RLESIIHDNP 705
             +     Q    K + L+NN I           + ++ + L  N+I+      +   + 
Sbjct: 113 R-VSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 706 HLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNL 765
            L  L+L YN ++  +  ++    +L  L L+ N +   +  +      V  I L +N L
Sbjct: 170 TLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 766 SGRIPPCLVNTS 777
              I   L  + 
Sbjct: 227 V-LIEKALRFSQ 237

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  103 bits (259), Expect = 4e-24
 Identities = 46/290 (15%), Positives = 92/290 (31%), Gaps = 33/290 (11%)

Query: 389 NLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSG----YVDGGTFPEFLYHQHDLNSV 444
           N ++ +      ++  ++        + +  + LSG     +                  
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA---------PFT 58

Query: 445 NLSHLNLSG----EFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFF 500
            L  LNLS     E  +  LE+ + L TL L NN +       +     + TL   NN  
Sbjct: 59  KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI 111

Query: 501 QGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATG 560
              +         G   + L+ N               ++ LD+  N++       +A  
Sbjct: 112 S-RVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 561 CFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDN 620
             +LE L L  N +       +     L TL L  N  +  +         +  + L +N
Sbjct: 168 SDTLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN 224

Query: 621 HLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSI 670
            L   I + L     L++  +  N       +      + ++  ++  ++
Sbjct: 225 KL-VLIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  101 bits (254), Expect = 2e-23
 Identities = 58/368 (15%), Positives = 120/368 (32%), Gaps = 62/368 (16%)

Query: 10  QQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSL 69
            + +   ++ +++    +           N+K L L+ N  +    + L   + L  L+L
Sbjct: 10  NRYKIEKVTDSSL----KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 70  ADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDG 129
           + N L    +   L SLS L  LD+  N ++ L           + TL+   + I R+  
Sbjct: 66  SSNVLY---ETLDLESLSTLRTLDLNNNYVQEL------LVGPSIETLHAANNNISRV-- 114

Query: 130 SKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASF 189
                S       K +YL++ K    + +      + ++ L L  +++      +  AS 
Sbjct: 115 -----SCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 190 TSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSL 249
            +L+HL++Q   +   + GQ       L+ LD+                           
Sbjct: 169 DTLEHLNLQYNFIY-DVKGQVVF--AKLKTLDL--------------------------- 198

Query: 250 TNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNIS 309
              S NK   +         +  + +R+N L   +   L    +L+      N       
Sbjct: 199 ---SSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTL 254

Query: 310 PGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEE 369
                    R   +    ++  L        ++  L        E++ +     L     
Sbjct: 255 RDF-FSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL----- 307

Query: 370 LILSNNHF 377
           + L ++H 
Sbjct: 308 IALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.7 bits (218), Expect = 8e-19
 Identities = 46/235 (19%), Positives = 88/235 (37%), Gaps = 33/235 (14%)

Query: 3   ASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHF------------ 50
           A+   PF +LE L+LS N +           L  L+ L+ L LN+N+             
Sbjct: 51  AADLAPFTKLELLNLSSNVL------YETLDLESLSTLRTLDLNNNYVQELLVGPSIETL 104

Query: 51  ---NNSIFS-SLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPK 106
              NN+I   S       +++ LA+N++   +        S ++ LD+  N I+ +   +
Sbjct: 105 HAANNNISRVSCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163

Query: 107 DFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTN 166
                  L  L L  + I  + G            LKTL LS  K     +  +  +   
Sbjct: 164 LAASSDTLEHLNLQYNFIYDVKGQV------VFAKLKTLDLSSNKL--AFMGPEFQSAAG 215

Query: 167 LEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLD 221
           +  + L  + L    + +++    +L+H  ++            F K + ++ + 
Sbjct: 216 VTWISLRNNKL--VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.0 bits (216), Expect = 1e-18
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 11/198 (5%)

Query: 584 NLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPN 643
           N       ++  ++    +       + ++ L LS N L       L     L+ + + +
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 644 NNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHD 703
           N L   + +E     +L+ LDL+NN +   L       SIE +H + N I     S    
Sbjct: 68  NVLYETLDLESLS--TLRTLDLNNNYV-QELLVG---PSIETLHAANNNISRVSCSR--- 118

Query: 704 NPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKG-EIPVQLCQLKEVRLIDLSH 762
                 + L+ N +            ++ YL L  N I              +  ++L +
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 763 NNLSGRIPPCLVNTSLNE 780
           N +   +   +V   L  
Sbjct: 179 NFIY-DVKGQVVFAKLKT 195

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.9 bits (156), Expect = 6e-11
 Identities = 25/185 (13%), Positives = 54/185 (29%), Gaps = 14/185 (7%)

Query: 6   FTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLR 65
                +++ LDL  N I         E  +    L+ L L  N             + L+
Sbjct: 140 EGCRSRVQYLDLKLNEI---DTVNFAELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLK 194

Query: 66  HLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIP 125
            L L+ N+L   +      S + +  + +  N +  +   K  R  + L    L G+   
Sbjct: 195 TLDLSSNKLA-FMG-PEFQSAAGVTWISLRNNKLVLI--EKALRFSQNLEHFDLRGN--- 247

Query: 126 RIDGSKVLQSIGSLPSLKTLYLSHTKF--KGTVVNQKLHNFTNLEELILDESDLHVSQLL 183
                 +         ++T+     K           +    +      ++     +  L
Sbjct: 248 GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL 307

Query: 184 QSIAS 188
            ++  
Sbjct: 308 IALGH 312

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
                   ++ + L   + +       +  L+LS N L+       +   ++E L+LS N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 894 LLHGKIPPQLIVLNTLEVFKVAYNNLS 920
           +L+      L  L+TL    +  N + 
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYVQ 93

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.0 bits (133), Expect = 5e-08
 Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 3/107 (2%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
              +  +DLS NKL   +  +      +  ++L +N L   I       + +E  DL  N
Sbjct: 190 FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247

Query: 894 LLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGN 940
             H     +        V  VA   +        +  T     + G 
Sbjct: 248 GFHC-GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.9 bits (125), Expect = 5e-07
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 833 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTG-TIPTTFSNLKQIESLDLS 891
                  I L+ NK+T       G  +R+  L+L  N +         ++   +E L+L 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 892 YNLLHGKIPPQLIVLNTLEVFKVAYNNLS 920
           YN ++  +    +V   L+   ++ N L+
Sbjct: 178 YNFIY-DVKG-QVVFAKLKTLDLSSNKLA 204

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.4 bits (116), Expect = 6e-06
 Identities = 14/70 (20%), Positives = 26/70 (37%)

Query: 851 IPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLE 910
           I        R     ++ ++L   + +   +   ++ LDLS N L       L     LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 911 VFKVAYNNLS 920
           +  ++ N L 
Sbjct: 62  LLNLSSNVLY 71

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
             S+  +  + N ++  +            + L++N +T           +++ LDL  N
Sbjct: 98  GPSIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

Query: 894 LLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRAQFS 930
            +      +L    +TLE   + YN +   +  +  F+
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFA 191

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.5 bits (98), Expect = 9e-04
 Identities = 12/97 (12%), Positives = 37/97 (38%), Gaps = 9/97 (9%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
           L+++  +DL+ N +      ++     I  L+ ++NN++    +     K   ++ L+ N
Sbjct: 79  LSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGKK---NIYLANN 130

Query: 894 LLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFS 930
            +           + ++   +  N +   +      +
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAA 166

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  121 bits (306), Expect = 2e-29
 Identities = 74/387 (19%), Positives = 142/387 (36%), Gaps = 36/387 (9%)

Query: 2   NASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGL 61
           N + F+  Q L+ L +        ++N +      L++L  L L+ N F      +  GL
Sbjct: 46  NETSFSRLQDLQFLKVEQQTPGLVIRNNT---FRGLSSLIILKLDYNQFLQLETGAFNGL 102

Query: 62  SSLRHLSLADNRLNGS-IDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLG 120
           ++L  L+L    L+G+ +       L++LE L +  N I+ +     F  +R+ + L L 
Sbjct: 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162

Query: 121 GSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQK-------LHNFTNLEELILD 173
            + +  I   + L +         L LS    +                  T++  L L 
Sbjct: 163 FNKVKSIC-EEDLLNFQGK-HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220

Query: 174 ESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNF 233
            +     +   +   F ++    +Q  +L  + +        N +  D    +       
Sbjct: 221 GNGF---KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK------- 270

Query: 234 LQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQ-LVHLQGLYIRDNDLRDGLPWCLANMT 292
               G     +    L+    +K   L + +      L+ L +  N++          +T
Sbjct: 271 ----GLEASGVKTCDLSK---SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323

Query: 293 SLQVLYASSNQLTGNISPGLCE-LVLLRKLYIDNNDLRGSLPLCL-ANLTSLRVLDVSYN 350
            L  L  S N L  +I   + E L  L  L +  N +R +L       L +L+ L +  N
Sbjct: 324 HLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTN 381

Query: 351 QLTENISSSSLMHLTSIEELILSNNHF 377
           QL  ++       LTS++++ L  N +
Sbjct: 382 QLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  112 bits (283), Expect = 2e-26
 Identities = 78/425 (18%), Positives = 128/425 (30%), Gaps = 54/425 (12%)

Query: 318 LRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHF 377
           +  + +  N +        + L  L+ L V        I +++   L+S+  L L  N F
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 378 FQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYH 437
            Q+         L+ L+                      L    LS    G  F      
Sbjct: 92  LQLETGA--FNGLANLEVLTLTQC--------------NLDGAVLS----GNFFK----P 127

Query: 438 QHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFN 497
              L  + L   N+    P     N      L L  N +            K    +   
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV------------KSICEEDLL 175

Query: 498 NFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERM 557
           NF   H        L  +   +++          +      +  LD+S N     + +R 
Sbjct: 176 NFQGKHF---TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF 232

Query: 558 ATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYL 617
                  +I +L  +       S             D   F G     +          L
Sbjct: 233 FDAIAGTKIQSLILSNSYNMGSSFGHTNFK----DPDNFTFKGLEASGVKT------CDL 282

Query: 618 SDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSC 677
           S + +F  +     +   L+ + +  N +       F     L  L+LS N + G++ S 
Sbjct: 283 SKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSR 341

Query: 678 -FSP-ASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRI-DRLPQLNYL 734
            F     +E + LS N I    +      P+L  L L  N L  S+P+ I DRL  L  +
Sbjct: 342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKI 400

Query: 735 LLAHN 739
            L  N
Sbjct: 401 WLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  109 bits (275), Expect = 2e-25
 Identities = 74/391 (18%), Positives = 136/391 (34%), Gaps = 47/391 (12%)

Query: 242 PSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPW-CLANMTSLQVLYAS 300
             +N++ L+ +S+ +  + +    +L  LQ L +        +       ++SL +L   
Sbjct: 30  AHVNYVDLSLNSIAE--LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87

Query: 301 SNQLTGNISPGLCE-LVLLRKLYIDNNDLRGSL--PLCLANLTSLRVLDVSYNQLTENIS 357
            NQ    +  G    L  L  L +   +L G++        LTSL +L +  N + +   
Sbjct: 88  YNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146

Query: 358 SSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPK--- 414
           +S  +++     L L+ N    I       F                + +   L  +   
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206

Query: 415 ---------------FQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHL--NLSGEFPN 457
                                    + D     +        +    S        +  N
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266

Query: 458 WLLEN--NTNLETLLLANNSLF----GSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTY 511
           +  +    + ++T  L+ + +F      F         L  L +  N     I       
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVF----SHFTDLEQLTLAQNEIN-KIDDNAFWG 321

Query: 512 LPGLMELNLSRNAFNGSIPS-SFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALS 570
           L  L++LNLS+N   GSI S  F ++  LE LD+S N +   + ++   G  +L+ LAL 
Sbjct: 322 LTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALD 379

Query: 571 NNRLQ---GHIFSEKFNLTNLMTLQLDGNNF 598
            N+L+     IF     LT+L  + L  N +
Sbjct: 380 TNQLKSVPDGIFD---RLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  107 bits (269), Expect = 1e-24
 Identities = 70/342 (20%), Positives = 122/342 (35%), Gaps = 41/342 (11%)

Query: 464 TNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRN 523
            ++  + L+ NS+           Q L  L V        I       L  L+ L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 524 AFNGSIPSS-FADMKMLERLDISNNQLTG-EIPERMATGCFSLEILALSNNRLQ----GH 577
            F   + +  F  +  LE L ++   L G  +         SLE+L L +N ++      
Sbjct: 90  QF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 578 IFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYM--LRGLYLSDNHLFGKIPRWLG---- 631
            F    N+     L L  N       E L          L LS   L      WLG    
Sbjct: 149 FFL---NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 632 ----NLPTLQYIIMPNNNLEGPIPIEFCQRDS---LKILDLSNNSI---------FGTLP 675
                  ++  + +  N  +  +   F    +   ++ L LSN+           F    
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 676 SC----FSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRI-DRLPQ 730
           +        + ++   LSK+KI   L+S+      L  L L+ N ++  I +     L  
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTH 324

Query: 731 LNYLLLAHNYIKGEIPVQLCQ-LKEVRLIDLSHNNLSGRIPP 771
           L  L L+ N++   I  ++ + L ++ ++DLS+N++   +  
Sbjct: 325 LLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGD 364

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 96.4 bits (240), Expect = 6e-21
 Identities = 78/443 (17%), Positives = 149/443 (33%), Gaps = 69/443 (15%)

Query: 528 SIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKF-NLT 586
            +P   A    +  +D+S N +  E+ E   +    L+ L +        I +  F  L+
Sbjct: 24  QVPELPAH---VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 587 NLMTLQLDGNNFIGEIPES-LSKCYMLRGLYLSDNHLFGKI--PRWLGNLPTLQYIIMPN 643
           +L+ L+LD N    ++     +    L  L L+  +L G +    +   L +L+ +++ +
Sbjct: 80  SLIILKLDYNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138

Query: 644 NNLEGPIP-IEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIH 702
           NN++   P   F       +LDL+ N +             +                + 
Sbjct: 139 NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF-------------TLL 185

Query: 703 DNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIP---VQLCQLKEVRLID 759
               +   D++   L         +   +  L L+ N  K  +           +++ + 
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245

Query: 760 LSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSI---WCRRASVYRSACLPGQSSPPMGKEE 816
           LS++   G           +      +  + +      ++ +     L            
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI---FALLKSV-------- 294

Query: 817 TVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTI 875
              F+             T +  + L+ N++  +I       LT +  LNLS N L    
Sbjct: 295 ---FSH-----------FTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSID 339

Query: 876 PTTFSNLKQIESLDLSYNLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRAQFSTFEE 934
              F NL ++E LDLSYN +   +  Q  + L  L+   +  N L   +PD   F     
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLK-SVPDGI-FDRLTS 396

Query: 935 DSY---EGNPFLCGQPLSKSCND 954
                   NP+ C      SC  
Sbjct: 397 LQKIWLHTNPWDC------SCPR 413

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 93.7 bits (233), Expect = 5e-20
 Identities = 81/460 (17%), Positives = 150/460 (32%), Gaps = 101/460 (21%)

Query: 87  SNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLY 146
           +++  +D++ N+I  L     F  L+ L  L +       +  +   +    L SL  L 
Sbjct: 30  AHVNYVDLSLNSIAELN-ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG---LSSLIILK 85

Query: 147 LSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSI-ASFTSLKHLSMQDCVLKGA 205
           L + +F   +     +   NLE L L + +L  + L  +     TSL+ L ++D  +K  
Sbjct: 86  LDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144

Query: 206 LHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLC 265
                FL  +    LD+         N ++    S+   + L+         T+L     
Sbjct: 145 QPASFFLNMRRFHVLDL-------TFNKVK----SICEEDLLNFQGKHF---TLLR---- 186

Query: 266 QLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLY--- 322
            L  +    + +  L           TS+  L  S N    +++    + +   K+    
Sbjct: 187 -LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245

Query: 323 ----------IDNNDLRGSLPLCLANL--TSLRVLDVSYNQLTENISSSSLMHLTSIEEL 370
                       + + +         L  + ++  D+S +++   +  S   H T +E+L
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA-LLKSVFSHFTDLEQL 304

Query: 371 ILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGT 430
            L+ N   +I  +    + L+ L   N   N               L SI      D   
Sbjct: 305 TLAQNEINKIDDNA--FWGLTHLLKLNLSQN--------------FLGSI------DSRM 342

Query: 431 FPEFLYHQHDLNSVNLSHLNLSG----EFPNWLLENNTNLETLLLANNSLFGSFRMPIHS 486
           F        +L    L  L+LS        +       NL+ L L  N L          
Sbjct: 343 F-------ENL--DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL---------- 383

Query: 487 HQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFN 526
                            +P  I   L  L ++ L  N ++
Sbjct: 384 ---------------KSVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 44/301 (14%), Positives = 81/301 (26%), Gaps = 51/301 (16%)

Query: 680 PASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRI-DRLPQLNYLLLAH 738
           PA +  V LS N I    E+       L  L +   +    I N     L  L  L L +
Sbjct: 29  PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 739 NYIKGEIPVQLCQ-LKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRAS 797
           N    ++       L  + ++ L+  NL                                
Sbjct: 89  NQFL-QLETGAFNGLANLEVLTLTQCNL-------------------------------- 115

Query: 798 VYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSG---IDLSCNKLT------ 848
               A L G    P+   E +     N+          +M     +DL+ NK+       
Sbjct: 116 --DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED 173

Query: 849 ----GEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLI 904
                     +  L+ I   +++   L             I +LDLS N     +  +  
Sbjct: 174 LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF 233

Query: 905 VLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGQPLSK-SCNDNGLTTVTPE 963
                   +    + S  +      + F++        L    +     + + +  +   
Sbjct: 234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS 293

Query: 964 A 964
            
Sbjct: 294 V 294

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  121 bits (305), Expect = 1e-28
 Identities = 97/493 (19%), Positives = 161/493 (32%), Gaps = 56/493 (11%)

Query: 292 TSLQVLYASSNQLTGNISPGLCE-LVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYN 350
              + L  S N ++  +       L  LR L + +N +R            L  LDVS+N
Sbjct: 52  PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110

Query: 351 QLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLF-NLSKLQTFNGEINAQTESHYD 409
           +L  NIS   +  L     L LS N F  +P+     F NL+KL                
Sbjct: 111 RLQ-NISCCPMASLR---HLDLSFNDFDVLPVC--KEFGNLTKLTFLGLSAA-------- 156

Query: 410 SLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETL 469
                 +   +               +       ++L   ++ G     L   NT +  L
Sbjct: 157 ------KFRQLD---------LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201

Query: 470 LLANNSLFGSFRMPIHSHQKLATLDV--FNNFFQGHIPVEIGTYLPGLMELNLSRNAFNG 527
           +   NSLF        +      L     N+     +   +     G   LN++      
Sbjct: 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261

Query: 528 SIPS-----SFADMKMLERLDISNNQLTGEIPERMATGCF----SLEILALSNNRLQGHI 578
           +         F   + +E L+I N  +T  I     T       SL I  + N       
Sbjct: 262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSK 321

Query: 579 FSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQY 638
            +       +    L  ++                 L  + N     + +    L  LQ 
Sbjct: 322 EALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQT 381

Query: 639 IIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPS------CFSPASIEQVHLSKNK 692
           +I+  N L+           ++  L+  + S+  +L S      C    SI  ++LS N 
Sbjct: 382 LILQRNGLKN-FFKVALMTKNMSSLETLDVSL-NSLNSHAYDRTCAWAESILVLNLSSNM 439

Query: 693 IEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPV-QLCQ 751
           + G +   +   P +  LDL  N +  SIP  +  L  L  L +A N +K  +P     +
Sbjct: 440 LTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDR 495

Query: 752 LKEVRLIDLSHNN 764
           L  ++ I L  N 
Sbjct: 496 LTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  116 bits (293), Expect = 3e-27
 Identities = 88/523 (16%), Positives = 166/523 (31%), Gaps = 76/523 (14%)

Query: 12  LESLDLSWNNIAGCVQNESLER--LSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSL 69
            ++L LS N+I+       L    +S L+ L+ L L+ N   +  F        L +L +
Sbjct: 54  TKALSLSQNSIS------ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107

Query: 70  ADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDG 129
           + NRL  +I       +++L  LD++ N  + L V K+F  L KL  L L  +   ++D 
Sbjct: 108 SHNRL-QNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD- 162

Query: 130 SKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASF 189
                                               +L    +   +    Q+       
Sbjct: 163 ----------------------LLPVAHLHLSCILLDLVSYHIKGGETESLQIPN----- 195

Query: 190 TSLKHLSMQDCVLKGALHGQDFLKFKNLE--YLDMGWVQVDVNTNFLQIVGESMPSLNFL 247
           T++ HL      L             +L+   + +          FL  +      LN  
Sbjct: 196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT 255

Query: 248 SLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLR-----DGLPWCLANMTSLQVLYASSN 302
                +  K ++          ++ L I +  +      +   +    + SL + +  + 
Sbjct: 256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ 315

Query: 303 QLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLM 362
               +          +    +  +D      +C  + +S   L+ + N  T+        
Sbjct: 316 VFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD-SVFQGCS 374

Query: 363 HLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISL 422
            L  ++ LIL  N             N+S L+T +  +N+     YD             
Sbjct: 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW-------- 426

Query: 423 SGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRM 482
                             +  +NLS   L+G     L      ++ L L NN +  S   
Sbjct: 427 ---------------AESILVLNLSSNMLTGSVFRCL---PPKVKVLDLHNNRI-MSIPK 467

Query: 483 PIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAF 525
            +   Q L  L+V +N  +  +P  +   L  L  + L  N +
Sbjct: 468 DVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  104 bits (261), Expect = 3e-23
 Identities = 78/438 (17%), Positives = 151/438 (34%), Gaps = 40/438 (9%)

Query: 3   ASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNN-SIFSSLGGL 61
             +F   Q LE LD+S N +      +++     + +L+ L L+ N F+   +    G L
Sbjct: 93  FHVFLFNQDLEYLDVSHNRL------QNISC-CPMASLRHLDLSFNDFDVLPVCKEFGNL 145

Query: 62  SSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGG 121
           + L  L L+  +    +D   L  +++L    +  + +   +   +   L+  NT  L  
Sbjct: 146 TKLTFLGLSAAKFR-QLD---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201

Query: 122 SGIP-RIDGSKVLQSIGSLPSLKTLYL---------SHTKFKGTVVNQKLHNFTNLEELI 171
              P  +   +V  S+ +L  L+   +           T          L N T      
Sbjct: 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261

Query: 172 LDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDF-LKFKNLEYLDMGWVQVDVN 230
             +  + + Q          +++L++ +  +   +  ++F      L+ L +  V+  V 
Sbjct: 262 TWKCSVKLFQFFWP----RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF 317

Query: 231 TNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLAN 290
               + +      +N   L+ S      ++            L    N   D +    + 
Sbjct: 318 LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP--SPSSFTFLNFTQNVFTDSVFQGCST 375

Query: 291 MTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDL----RGSLPLCLANLTSLRVLD 346
           +  LQ L    N L  N          +  L   +  L      +     A   S+ VL+
Sbjct: 376 LKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434

Query: 347 VSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTES 406
           +S N LT ++       +     L L NN    IP  +  L  L +L   + ++ +  + 
Sbjct: 435 LSSNMLTGSVFRCLPPKVK---VLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDG 491

Query: 407 HYDSLTPKFQLTSISLSG 424
            +D LT    L  I L  
Sbjct: 492 VFDRLT---SLQYIWLHD 506

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 97.6 bits (243), Expect = 4e-21
 Identities = 93/462 (20%), Positives = 162/462 (35%), Gaps = 42/462 (9%)

Query: 206 LHGQDFLKFKNLEYLDMGWVQVDVNTNFLQI----VGESMPSLNFLSLTNSSLNKHTILD 261
           L   D      L  L +         N ++     V      L +L ++++ L    I  
Sbjct: 67  LRMPDISFLSELRVLRLSH-------NRIRSLDFHVFLFNQDLEYLDVSHNRL--QNISC 117

Query: 262 QGLCQLVHLQGLYIRDNDLRDGLPWC--LANMTSLQVLYASSNQLTGNISPGLCELVL-L 318
             +  L HL    +  ND  D LP C    N+T L  L  S+ +        +  L L  
Sbjct: 118 CPMASLRHL---DLSFNDF-DVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSC 173

Query: 319 RKLYIDNNDLRGSLPLCLANL-TSLRVLDVSYNQLTENISSSSLMHLTSIE--ELILSNN 375
             L + +  ++G     L    T++  L    N L     + S+  L  ++   + L++ 
Sbjct: 174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE 233

Query: 376 HFFQIPISLEPLFNLSKLQTF---NGEINAQTESHYDSLTPKFQLTSISLSG--YVDGGT 430
           +  ++   L  L     L      + E   +             +  +++      +   
Sbjct: 234 NCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERID 293

Query: 431 FPEFLYHQHDLNSVNLSHL--NLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQ 488
             EF Y +  L S+ + H+   +       L      +   +L+ +       +   S  
Sbjct: 294 REEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPS 353

Query: 489 KLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSF---ADMKMLERLDIS 545
               L+   N F      +  + L  L  L L RN    +         +M  LE LD+S
Sbjct: 354 SFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVS 411

Query: 546 NNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLT-NLMTLQLDGNNFIGEIPE 604
            N L     +R      S+ +L LS+N L G +F     L   +  L L  N  I  IP+
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC---LPPKVKVLDLHNNR-IMSIPK 467

Query: 605 SLSKCYMLRGLYLSDNHLFGKIPR-WLGNLPTLQYIIMPNNN 645
            ++    L+ L ++ N L   +P      L +LQYI + +N 
Sbjct: 468 DVTHLQALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 89.5 bits (222), Expect = 2e-18
 Identities = 91/521 (17%), Positives = 178/521 (34%), Gaps = 70/521 (13%)

Query: 87  SNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLY 146
              + L ++ N+I  L    D   L +L  L L  + I  +D             L+ L 
Sbjct: 52  PRTKALSLSQNSISELR-MPDISFLSELRVLRLSHNRIRSLDFH----VFLFNQDLEYLD 106

Query: 147 LSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGAL 206
           +SH + +    N       +L  L L  +D  V  + +   + T L  L +     +   
Sbjct: 107 VSHNRLQ----NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-- 160

Query: 207 HGQDFLKFKNLEYLDMGWVQVDVNTNFLQ-IVGESMPSLNFLSLTNSSLNKHTILDQGLC 265
                L    + +L +  + +D+ +  ++    ES+   N   L            Q   
Sbjct: 161 -----LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM 215

Query: 266 QLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDN 325
            +  L  L + +  L         N  + Q L    ++LT    P L  + L        
Sbjct: 216 SVNALGHLQLSNIKL---------NDENCQRLMTFLSELTRG--PTLLNVTLQHIETTWK 264

Query: 326 NDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLE 385
             ++         +  L + +++  +  +    +     T+++ L++ +        S E
Sbjct: 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT--YSETALKSLMIEHVKNQVFLFSKE 322

Query: 386 PLFN-LSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSV 444
            L++  +++      I+                  I                       +
Sbjct: 323 ALYSVFAEMNIKMLSIS--------------DTPFI----------HMVCPPSPSSFTFL 358

Query: 445 NLSHLNLSGEFPNWLLENNTNLETLLLANN---SLFGSFRMPIHSHQKLATLDVFNNFFQ 501
           N +  N+  +           L+TL+L  N   + F    M   +   L TLDV  N   
Sbjct: 359 NFTQ-NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT-KNMSSLETLDVSLNSLN 416

Query: 502 GHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGC 561
            H       +   ++ LNLS N   GS+         ++ LD+ NN++   IP+ + T  
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDV-THL 472

Query: 562 FSLEILALSNNRLQ---GHIFSEKFNLTNLMTLQLDGNNFI 599
            +L+ L +++N+L+     +F     LT+L  + L  N + 
Sbjct: 473 QALQELNVASNQLKSVPDGVFD---RLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 77.2 bits (190), Expect = 1e-14
 Identities = 73/484 (15%), Positives = 153/484 (31%), Gaps = 62/484 (12%)

Query: 442 NSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSL----FGSFRMPIHSHQKLATLDVFN 497
           + V+ S+ NL+   P  L       + L L+ NS+                +L  L + +
Sbjct: 34  SMVDYSNRNLT-HVPKDLP---PRTKALSLSQNSISELRMPDI----SFLSELRVLRLSH 85

Query: 498 NFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERM 557
           N  +  +   +  +   L  L++S N    +I      M  L  LD+S N     +P   
Sbjct: 86  NRIR-SLDFHVFLFNQDLEYLDVSHNRL-QNIS--CCPMASLRHLDLSFNDFD-VLPVCK 140

Query: 558 ATGCF-SLEILALSNNRLQGHIFSEKFNLTNLMTLQLD-GNNFIGEIPESLSKCYMLRGL 615
             G    L  L LS  + +  +        +L  + LD  +  I        +      L
Sbjct: 141 EFGNLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199

Query: 616 YLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEG-------PIPIEFCQRDSLKILDLSNN 668
           +L  +       +   ++  L ++ + N  L             E  +  +L  + L + 
Sbjct: 200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259

Query: 669 SI----FGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPH-----LVTLDLSYNSLHG 719
                    L   F P  +E +++    I  R++             L+   +       
Sbjct: 260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLF 319

Query: 720 SIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS---GRIPPCLVNT 776
           S         ++N  +L+ +       V          ++ + N  +    +    L   
Sbjct: 320 SKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL 379

Query: 777 SLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQG----- 831
                        ++  +R  +         +                 S          
Sbjct: 380 ------------QTLILQRNGL---KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424

Query: 832 RILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 891
               S+  ++LS N LTG +   +    ++  L+L +N +  +IP   ++L+ ++ L+++
Sbjct: 425 AWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVA 481

Query: 892 YNLL 895
            N L
Sbjct: 482 SNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 58.3 bits (141), Expect = 9e-09
 Identities = 56/345 (16%), Positives = 100/345 (28%), Gaps = 16/345 (4%)

Query: 586 TNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWL-GNLPTLQYIIMPNN 644
                L L  N+        +S    LR L LS N +   +   +      L+Y+ + +N
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI-RSLDFHVFLFNQDLEYLDVSHN 110

Query: 645 NLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSC--FSP-ASIEQVHLSKNKI-EGRLESI 700
            L+    I  C   SL+ LDLS N  F  LP C  F     +  + LS  K  +  L  +
Sbjct: 111 RLQN---ISCCPMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV 166

Query: 701 IHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDL 760
            H +   + LDL    + G     +        L L  +            +  +  + L
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225

Query: 761 SHNNLSGRIPPCLVNTSLNEGYHGEVAPTSI-WCRRASVYRSACLPGQSSPPMGKEETVQ 819
           S+  L+      L+           +   ++                    P+       
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285

Query: 820 FT----TKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTI 875
            T         + Y    L S+    +                  ++   LS ++     
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH 345

Query: 876 PTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLS 920
                +      L+ + N+    +      L  L+   +  N L 
Sbjct: 346 MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 4/98 (4%)

Query: 833 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 892
           +      + LS N ++      I +L+ +  L LSHN +       F   + +E LD+S+
Sbjct: 50  LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109

Query: 893 NLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFS 930
           N L   I      + +L    +++N+    +P   +F 
Sbjct: 110 NRLQ-NISCC--PMASLRHLDLSFNDFD-VLPVCKEFG 143

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  115 bits (290), Expect = 1e-26
 Identities = 70/322 (21%), Positives = 113/322 (35%), Gaps = 45/322 (13%)

Query: 463 NTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSR 522
           N     L +  + L     +P      + TL + +N     +P         L  L +S 
Sbjct: 39  NNGNAVLNVGESGLT---TLPDCLPAHITTLVIPDNNLT-SLPALPP----ELRTLEVSG 90

Query: 523 NAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEK 582
           N    S+P     +  L         L              L  L +  N+L     S  
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLPALPS--------GLCKLWIFGNQLT----SLP 137

Query: 583 FNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMP 642
                L  L +  +N +  +P   S+   L  L+  +N L   +P     L   Q + + 
Sbjct: 138 VLPPGLQELSVS-DNQLASLPALPSE---LCKLWAYNNQL-TSLPMLPSGL---QELSVS 189

Query: 643 NNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIH 702
           +N L   +P    +   L  L   NN +  +LP+   P+ ++++ +S N    RL S+  
Sbjct: 190 DNQLAS-LPTLPSE---LYKLWAYNNRL-TSLPA--LPSGLKELIVSGN----RLTSLPV 238

Query: 703 DNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSH 762
               L  L +S N L  S+P        L  L +  N +   +P  L  L     ++L  
Sbjct: 239 LPSELKELMVSGNRL-TSLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293

Query: 763 NNLSGRIPPCLVNTSLNEGYHG 784
           N LS R    L   +   GY G
Sbjct: 294 NPLSERTLQALREITSAPGYSG 315

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  114 bits (288), Expect = 2e-26
 Identities = 72/375 (19%), Positives = 124/375 (33%), Gaps = 61/375 (16%)

Query: 30  SLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNL 89
              R         L + ++    ++   L   + +  L + DN L  S+          L
Sbjct: 32  QKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLP----ALPPEL 83

Query: 90  EELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSH 149
             L+++GN + +L  P    GL +L+      + +P +              L  L++  
Sbjct: 84  RTLEVSGNQLTSL--PVLPPGLLELSIFSNPLTHLPAL-----------PSGLCKLWIFG 130

Query: 150 TKFKGTVVNQKLHN-FTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHG 208
            +         L      L+EL +  SD  ++ L    +    L   + Q   L      
Sbjct: 131 NQLT------SLPVLPPGLQELSV--SDNQLASLPALPSELCKLWAYNNQLTSLPMLP-- 180

Query: 209 QDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLV 268
                   L+ L        V+ N L  +      L  L   N   N+ T L      L 
Sbjct: 181 ------SGLQELS-------VSDNQLASLPTLPSELYKLWAYN---NRLTSLPALPSGL- 223

Query: 269 HLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDL 328
             + L +  N L   LP      + L+ L  S N+LT ++      L     L +  N L
Sbjct: 224 --KELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPMLPSGL---LSLSVYRNQL 273

Query: 329 RGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLF 388
              LP  L +L+S   +++  N L+E  +  +L  +TS          F     S     
Sbjct: 274 T-RLPESLIHLSSETTVNLEGNPLSE-RTLQALREITSAPGYSGPIIRFDMAGASAPRET 331

Query: 389 NLSKLQTFNGEINAQ 403
               L   +  + A+
Sbjct: 332 RALHLAAADWLVPAR 346

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  109 bits (275), Expect = 7e-25
 Identities = 69/364 (18%), Positives = 120/364 (32%), Gaps = 74/364 (20%)

Query: 313 CELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELIL 372
           C       L +  + L  +LP CL     +  L +  N LT  + +        +  L +
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLTS-LPAL----PPELRTLEV 88

Query: 373 SNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFP 432
           S N    +P+       L +L  F+  +                L ++            
Sbjct: 89  SGNQLTSLPVLPP---GLLELSIFSNPLT--------------HLPALPSG--------- 122

Query: 433 EFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLAT 492
                   L  + +    L+   P         L+ L +++N L  S          L  
Sbjct: 123 --------LCKLWIFGNQLT-SLPVLP----PGLQELSVSDNQL-ASLPALPSE---LCK 165

Query: 493 LDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGE 552
           L  +NN     +P+       GL EL++S N    S+P+  ++   L +L   NN+LT  
Sbjct: 166 LWAYNNQLT-SLPMLPS----GLQELSVSDNQLA-SLPTLPSE---LYKLWAYNNRLT-S 215

Query: 553 IPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYML 612
           +P   +     L+ L +S NRL   +       + L  L +   N +  +P   S    L
Sbjct: 216 LPALPS----GLKELIVSGNRLT-SLPVL---PSELKELMVS-GNRLTSLPMLPSG---L 263

Query: 613 RGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFG 672
             L +  N L  ++P  L +L +   + +  N L         +  S             
Sbjct: 264 LSLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDM 322

Query: 673 TLPS 676
              S
Sbjct: 323 AGAS 326

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  106 bits (267), Expect = 6e-24
 Identities = 71/387 (18%), Positives = 120/387 (31%), Gaps = 98/387 (25%)

Query: 265 CQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYID 324
           C       L + ++ L   LP CL     +  L    N LT ++     EL   R L + 
Sbjct: 37  CLNNGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPALPPEL---RTLEVS 89

Query: 325 NNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISL 384
            N L  SLP+    L  L +       L            + + +L +  N    +P+  
Sbjct: 90  GNQLT-SLPVLPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIFGNQLTSLPVLP 140

Query: 385 EPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSV 444
                L +L   +                  QL S+           P        L  +
Sbjct: 141 P---GLQELSVSD-----------------NQLASL-----------PALPSE---LCKL 166

Query: 445 NLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHI 504
              +  L+   P       + L+ L +++N L                           +
Sbjct: 167 WAYNNQLT-SLPMLP----SGLQELSVSDNQL-------------------------ASL 196

Query: 505 PVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSL 564
           P         L +L    N    S+P+       L+ L +S N+LT  +P   +     L
Sbjct: 197 PTLPS----ELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVLPS----EL 243

Query: 565 EILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFG 624
           + L +S NRL     S     + L++L +  N  +  +PESL        + L  N L  
Sbjct: 244 KELMVSGNRLT----SLPMLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLSE 298

Query: 625 KIPRWLGNLPTLQYIIMPNNNLEGPIP 651
           +  + L  + +      P    +    
Sbjct: 299 RTLQALREITSAPGYSGPIIRFDMAGA 325

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  101 bits (253), Expect = 3e-22
 Identities = 67/357 (18%), Positives = 123/357 (34%), Gaps = 81/357 (22%)

Query: 539 LERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNF 598
              L++  + LT  +P+ +      +  L + +N L     S       L TL++ GN  
Sbjct: 42  NAVLNVGESGLT-TLPDCLPA---HITTLVIPDNNLT----SLPALPPELRTLEVSGNQ- 92

Query: 599 IGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRD 658
           +  +P        L        HL    P     L  L    +  N L   +P+      
Sbjct: 93  LTSLPVLPPGLLELSIFSNPLTHL----PALPSGLCKLW---IFGNQLTS-LPVLP---P 141

Query: 659 SLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLH 718
            L+ L +S+N +  +LP+   P+ + ++    N    +L S+      L  L +S N L 
Sbjct: 142 GLQELSVSDNQL-ASLPA--LPSELCKLWAYNN----QLTSLPMLPSGLQELSVSDNQLA 194

Query: 719 GSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSL 778
            S+P     L +L      +N +   +P     LKE   + +S N L+  +P     + L
Sbjct: 195 -SLPTLPSELYKLWAY---NNRLT-SLPALPSGLKE---LIVSGNRLT-SLPVLP--SEL 243

Query: 779 NEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMS 838
                       +      +     LP                           + + + 
Sbjct: 244 ----------KELMVSGNRL---TSLP--------------------------MLPSGLL 264

Query: 839 GIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 895
            + +  N+LT  +P  + +L+    +NL  N L+     T   L++I S       +
Sbjct: 265 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS---ERTLQALREITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  101 bits (252), Expect = 4e-22
 Identities = 64/393 (16%), Positives = 117/393 (29%), Gaps = 62/393 (15%)

Query: 9   FQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLS 68
              + +L +  NN+       SL   +    L+ L ++ N    S+     GL  L   S
Sbjct: 60  PAHITTLVIPDNNL------TSLP--ALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFS 110

Query: 69  LADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRID 128
                L            S L +L + GN + +L  P    GL++L+      + +P   
Sbjct: 111 NPLTHLP--------ALPSGLCKLWIFGNQLTSL--PVLPPGLQELSVSDNQLASLP--- 157

Query: 129 GSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKL-HNFTNLEELILDESDLHVSQLLQSIA 187
                        L  L+  + +         L    + L+EL + ++ L  + L    +
Sbjct: 158 --------ALPSELCKLWAYNNQL------TSLPMLPSGLQELSVSDNQL--ASLPTLPS 201

Query: 188 SFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFL 247
               L   + +   L              L+ L        V+ N L  +      L  L
Sbjct: 202 ELYKLWAYNNRLTSLPALPS--------GLKELI-------VSGNRLTSLPVLPSELKEL 246

Query: 248 SLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGN 307
            ++    N+ T L      L+ L    +  N L   LP  L +++S   +    N L+  
Sbjct: 247 MVSG---NRLTSLPMLPSGLLSL---SVYRNQLTR-LPESLIHLSSETTVNLEGNPLSER 299

Query: 308 ISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSI 367
               L E+               +         +L +    +         +        
Sbjct: 300 TLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMF 359

Query: 368 EELILSNNHFFQIPISLEPLFNLSKLQTFNGEI 400
            +   + + F      L    N  K   F  +I
Sbjct: 360 GQE-DNADAFSLFLDRLSETENFIKDAGFKAQI 391

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 98.4 bits (245), Expect = 3e-21
 Identities = 70/353 (19%), Positives = 121/353 (34%), Gaps = 79/353 (22%)

Query: 585 LTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNN 644
                 L +  +  +  +P+ L     +  L + DN+L   +P     L TL+   +  N
Sbjct: 39  NNGNAVLNVGESG-LTTLPDCLPAH--ITTLVIPDNNL-TSLPALPPELRTLE---VSGN 91

Query: 645 NLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDN 704
            L   +P+       L I           LP+   P+ + ++ +  N+    L S+    
Sbjct: 92  QLTS-LPVLPPGLLELSIFSNPLTH----LPA--LPSGLCKLWIFGNQ----LTSLPVLP 140

Query: 705 PHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNN 764
           P L  L +S N L  S+P       +L  L   +N +   +P+    L+E   + +S N 
Sbjct: 141 PGLQELSVSDNQL-ASLPALP---SELCKLWAYNNQLT-SLPMLPSGLQE---LSVSDNQ 192

Query: 765 LSGRIPPCLVN-TSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTK 823
           L+  +P        L    +                R   LP                  
Sbjct: 193 LA-SLPTLPSELYKLWAYNN----------------RLTSLPAL---------------- 219

Query: 824 NMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLK 883
                      + +  + +S N+LT  +P     L     L +S N LT ++P   S L 
Sbjct: 220 ----------PSGLKELIVSGNRLT-SLPVLPSELKE---LMVSGNRLT-SLPMLPSGL- 263

Query: 884 QIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDS 936
              SL +  N L  ++P  LI L++     +  N LS +     +  T     
Sbjct: 264 --LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGY 313

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 81.5 bits (201), Expect = 5e-16
 Identities = 56/293 (19%), Positives = 95/293 (32%), Gaps = 74/293 (25%)

Query: 629 WLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHL 688
           W    P  +              +  C  +   +L++  + +  TLP C  PA I  + +
Sbjct: 15  WRRAAPAEES----RGRAAVVQKMRACLNNGNAVLNVGESGL-TTLPDCL-PAHITTLVI 68

Query: 689 SKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQ 748
             N +           P L TL++S N L  S+P     L +L+       ++   +P  
Sbjct: 69  PDNNLTSLPALP----PELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-ALPSG 122

Query: 749 LCQLKEVRLIDLSHNNLSGRIPPCLVN-TSLNEGYHGEVAPTSIWCRRASVYRSACLPGQ 807
           LC+L       +  N L+  +P        L+                 S  + A LP  
Sbjct: 123 LCKL------WIFGNQLT-SLPVLPPGLQELS----------------VSDNQLASLPAL 159

Query: 808 SSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLS 867
                                      + +  +    N+LT  +P     L     L++S
Sbjct: 160 --------------------------PSELCKLWAYNNQLT-SLPMLPSGLQE---LSVS 189

Query: 868 HNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLS 920
            N L  ++PT  S L     L    N L   +P      + L+   V+ N L+
Sbjct: 190 DNQLA-SLPTLPSEL---YKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT 234

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 74.2 bits (182), Expect = 1e-13
 Identities = 63/389 (16%), Positives = 108/389 (27%), Gaps = 83/389 (21%)

Query: 5   LFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSL 64
           L     +L        ++            +  + L  L++  N    S+         L
Sbjct: 99  LPPGLLELSIFSNPLTHLP-----------ALPSGLCKLWIFGNQL-TSLPVLPP---GL 143

Query: 65  RHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGI 124
           + LS++DN+L  S+        S L +L    N + +L  P    GL++L+      + +
Sbjct: 144 QELSVSDNQLA-SLP----ALPSELCKLWAYNNQLTSL--PMLPSGLQELSVSDNQLASL 196

Query: 125 PRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQ 184
           P             L  L       T              + L+ELI+       ++L  
Sbjct: 197 P--------TLPSELYKLWAYNNRLTSLPA--------LPSGLKELIVSG-----NRLTS 235

Query: 185 SIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSL 244
                + LK L                                 V+ N L  +      L
Sbjct: 236 LPVLPSELKEL--------------------------------MVSGNRLTSLPMLPSGL 263

Query: 245 NFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQL 304
             LS+     N+ T L + L  L     + +  N L +        +  +      S  +
Sbjct: 264 LSLSVYR---NQLTRLPESLIHLSSETTVNLEGNPLSE-RTLQ--ALREITSAPGYSGPI 317

Query: 305 TGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHL 364
                 G       R L++   D    +P             +   +   +  S  L  L
Sbjct: 318 IRFDMAGASAPRETRALHLAAADW--LVPAREGEPAPADRWHMFGQEDNADAFSLFLDRL 375

Query: 365 TSIEELILSNNHFFQIPISLEPLFNLSKL 393
           +  E  I       QI   L  L     L
Sbjct: 376 SETENFIKDAGFKAQISSWLAQLAEDEAL 404

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  112 bits (281), Expect = 3e-26
 Identities = 90/498 (18%), Positives = 162/498 (32%), Gaps = 97/498 (19%)

Query: 242 PSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASS 301
           P  NF S   ++            QL  L  L   ++ + D +   +  +T L  L  +S
Sbjct: 16  PDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTS 73

Query: 302 NQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSL 361
           N +T   +  L +   L  L  D+N L  +L   +  LT L  L+   N+LT       +
Sbjct: 74  NNIT---TLDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT----KLDV 123

Query: 362 MHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSIS 421
                +  L  + N   +I +S     + ++L   +  +N +       +TP+ QLT++ 
Sbjct: 124 SQNPLLTYLNCARNTLTEIDVS-----HNTQLTELDCHLNKKITK--LDVTPQTQLTTL- 175

Query: 422 LSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFR 481
                             D +   ++ L++S          N  L  L    N       
Sbjct: 176 ------------------DCSFNKITELDVS---------QNKLLNRLNCDTN------- 201

Query: 482 MPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLER 541
                   +  LD+                   L  L+ S N     I      +  L  
Sbjct: 202 -------NITKLDLNQ--------------NIQLTFLDCSSNKLT-EID--VTPLTQLTY 237

Query: 542 LDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGE 601
            D S N LT E+     +    L  L      L     +   + T L+  Q +G   I E
Sbjct: 238 FDCSVNPLT-ELDV---STLSKLTTLHCIQTDLLEIDLT---HNTQLIYFQAEGCRKIKE 290

Query: 602 IPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLK 661
           +   ++    L  L      +  ++   L   P L Y+ + N  L   + +       LK
Sbjct: 291 LD--VTHNTQLYLLDCQAAGI-TELD--LSQNPKLVYLYLNNTELTE-LDVSHNT--KLK 342

Query: 662 ILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSI 721
            L   N  I     S     ++     ++ +     +  + +N   +T+ +S + L    
Sbjct: 343 SLSCVNAHI-QDFSSVGKIPALNNNFEAEGQTITMPKETLTNN--SLTIAVSPDLL-DQF 398

Query: 722 PNRIDRLPQLNYLLLAHN 739
            N ++  P    +     
Sbjct: 399 GNPMNIEPGDGGVYDQAT 416

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  112 bits (281), Expect = 4e-26
 Identities = 74/444 (16%), Positives = 146/444 (32%), Gaps = 69/444 (15%)

Query: 34  LSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELD 93
             +L  L  L  +++   +   + +  L+ L  L    N +  ++D   L+  +NL  L 
Sbjct: 38  EEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLA 91

Query: 94  MTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFK 153
              N + NL    D   L KL  L    + + ++D       +   P L  L  +     
Sbjct: 92  CDSNKLTNL----DVTPLTKLTYLNCDTNKLTKLD-------VSQNPLLTYLNCARNTLT 140

Query: 154 GTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLK 213
                  + + T L EL    +          +   T L  L      +       D  +
Sbjct: 141 ----EIDVSHNTQLTELDCHLNKK---ITKLDVTPQTQLTTLDCSFNKITEL----DVSQ 189

Query: 214 FKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGL 273
            K L  L+          N  ++       L FL  ++   NK T +D  +  L  L   
Sbjct: 190 NKLLNRLNCD------TNNITKLDLNQNIQLTFLDCSS---NKLTEID--VTPLTQLTYF 238

Query: 274 YIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLP 333
               N L + L   ++ ++ L  L+     L   I   L     L     +       L 
Sbjct: 239 DCSVNPLTE-LD--VSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKELD 292

Query: 334 LCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKL 393
           +   + T L +LD     +T       L     +  L L+N    ++ +S     + +KL
Sbjct: 293 VT--HNTQLYLLDCQAAGIT----ELDLSQNPKLVYLYLNNTELTELDVS-----HNTKL 341

Query: 394 QTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSG 453
           ++ +         H    +   ++ +++ +   +G            +    L++ +L+ 
Sbjct: 342 KSLSCVNA-----HIQDFSSVGKIPALNNNFEAEG--------QTITMPKETLTNNSLTI 388

Query: 454 EFPNWLLENNTNLETLLLANNSLF 477
                LL+   N   +   +  ++
Sbjct: 389 AVSPDLLDQFGNPMNIEPGDGGVY 412

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  110 bits (277), Expect = 1e-25
 Identities = 78/464 (16%), Positives = 149/464 (32%), Gaps = 95/464 (20%)

Query: 318 LRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHF 377
                    +++ +  +    L +L  LD   + +T     + +  LT + +LI ++N+ 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSNNI 76

Query: 378 FQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYH 437
             + +S       + L     + N              +LT++ ++              
Sbjct: 77  TTLDLS-----QNTNLTYLACDSN--------------KLTNLDVT-------------- 103

Query: 438 QHDLNSVNLSHLNLSGEFPNWL----LENNTNLETLLLANNSLFGSFRMPIHSHQKLATL 493
                   L++LN      N L    +  N  L  L  A N+L     + +  + +L  L
Sbjct: 104 ----PLTKLTYLNCDT---NKLTKLDVSQNPLLTYLNCARNTL---TEIDVSHNTQLTEL 153

Query: 494 DVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEI 553
           D   N     + V   T    L  L+ S N          +  K+L RL+   N +T ++
Sbjct: 154 DCHLNKKITKLDV---TPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KL 206

Query: 554 PERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLR 613
                     L  L  S+N+L     +    LT L       N  + E+   +S    L 
Sbjct: 207 D---LNQNIQLTFLDCSSNKLTEIDVT---PLTQLTYFDCSVNP-LTELD--VSTLSKLT 257

Query: 614 GLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSI--- 670
            L+     L  +I   L +   L Y           + +       L +LD     I   
Sbjct: 258 TLHCIQTDL-LEID--LTHNTQLIYFQAEGCRKIKELDVTHNT--QLYLLDCQAAGITEL 312

Query: 671 -FGTLPSCFSPASIEQVHLSKNKIEGRLESI-IHDNPHLVTLDLSYNSLHGSIPNRIDRL 728
                P       +  ++L+  +    L  + +  N  L +L      +     + + ++
Sbjct: 313 DLSQNP------KLVYLYLNNTE----LTELDVSHNTKLKSLSCVNAHI-QDFSS-VGKI 360

Query: 729 PQLNYLLLAHNYIKGEIPVQLCQLKEV------RLIDLSHNNLS 766
           P LN    A       +P +      +       L+D   N ++
Sbjct: 361 PALNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLDQFGNPMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 94.8 bits (236), Expect = 2e-20
 Identities = 77/493 (15%), Positives = 152/493 (30%), Gaps = 53/493 (10%)

Query: 498 NFFQGHIPVEIGTYLPG--LMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPE 555
           N  +         + P         +      +   S   +  L  LD  N+ +T ++  
Sbjct: 1   NTLKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG 59

Query: 556 RMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGL 615
                   L  L  ++N +     S     TNL  L  D N  +  +   ++    L  L
Sbjct: 60  --IEKLTGLTKLICTSNNITTLDLS---QNTNLTYLACDSNK-LTNLD--VTPLTKLTYL 111

Query: 616 YLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLP 675
               N L  K+   +   P L Y+    N L     I+      L  LD   N    T  
Sbjct: 112 NCDTNKL-TKLD--VSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKI-TKL 164

Query: 676 SCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLL 735
                  +  +  S NKI    E  +  N  L  L+   N++   +   +++  QL +L 
Sbjct: 165 DVTPQTQLTTLDCSFNKIT---ELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLD 218

Query: 736 LAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRR 795
            + N +  EI   +  L ++   D S N L+  +      + L          T++ C +
Sbjct: 219 CSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELDVST-LSKL----------TTLHCIQ 263

Query: 796 ASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQI 855
             +                E   +    ++++       T +  +D     +T E+   +
Sbjct: 264 TDLLEIDLTHNTQLIYFQAEGCRKIKELDVTH------NTQLYLLDCQAAGIT-ELD--L 314

Query: 856 GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVA 915
               ++  L L++  LT  +    S+  +++SL      +  +    +  +  L     A
Sbjct: 315 SQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHI--QDFSSVGKIPALNNNFEA 369

Query: 916 YNNLSGKIPDRAQFSTFEEDSYEGNPFLCGQPLSKSCNDNGLTTVTPEASTENEGDSLID 975
                    +    ++             G P++    D G+        T     +   
Sbjct: 370 EGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNP 429

Query: 976 TDSFLITFTVSYG 988
             ++  T      
Sbjct: 430 AVTYTFTSENGAI 442

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  110 bits (278), Expect = 9e-26
 Identities = 61/232 (26%), Positives = 97/232 (41%), Gaps = 11/232 (4%)

Query: 513 PGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNN 572
                LNL  N       +SF  ++ LE L +S N +   I      G  +L  L L +N
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN 122

Query: 573 RLQGHIFSEKF-NLTNLMTLQLDGNNFIGEIPESL-SKCYMLRGLYLSDNHLFGKIPR-W 629
           RL   I +  F  L+ L  L L  N  I  IP    ++   LR L L +      I    
Sbjct: 123 RLT-TIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180

Query: 630 LGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSP-ASIEQVHL 688
              L  L+Y+ +   NL   IP        L  LDLS N +    P  F     ++++ +
Sbjct: 181 FEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238

Query: 689 SKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRI-DRLPQLNYLLLAHN 739
            +++I+    +   +   LV ++L++N+L   +P+ +   L  L  + L HN
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  104 bits (261), Expect = 1e-23
 Identities = 58/232 (25%), Positives = 94/232 (40%), Gaps = 8/232 (3%)

Query: 490 LATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQL 549
              L++  N  Q  I V    +L  L  L LSRN        +F  +  L  L++ +N+L
Sbjct: 66  TRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 550 TGEIPERMATGCFSLEILALSNNRLQGHIFSEKF-NLTNLMTLQLDGNNFIGEIPE-SLS 607
           T  IP         L+ L L NN ++  I S  F  + +L  L L     +  I E +  
Sbjct: 125 T-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

Query: 608 KCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSN 667
               LR L L+  +L  +IP  L  L  L  + +  N+L    P  F     L+ L +  
Sbjct: 183 GLSNLRYLNLAMCNL-REIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240

Query: 668 NSIFGTLPSCFSP-ASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLH 718
           + I     + F    S+ +++L+ N +      +     HL  + L +N  +
Sbjct: 241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  103 bits (259), Expect = 2e-23
 Identities = 60/312 (19%), Positives = 99/312 (31%), Gaps = 89/312 (28%)

Query: 292 TSLQVLYASSNQLTGNISPG-LCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYN 350
           T+ ++L    NQ+   I       L  L  L +  N +R         L +L  L++  N
Sbjct: 64  TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 351 QLTENISSSSLMHLTSIEELILSNNHFFQIPISL-EPLFNLSKLQTFNGEINAQTESHYD 409
           +LT  I + + ++L+ ++EL L NN    IP      + +L +L                
Sbjct: 123 RLTT-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL---------------- 165

Query: 410 SLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETL 469
                                              +L  L           E  +NL  L
Sbjct: 166 -----------------------------------DLGELKRLSYISEGAFEGLSNLRYL 190

Query: 470 LLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSI 529
            LA                 L  +                  L  L EL+LS N  +   
Sbjct: 191 NLAMC--------------NLREIPNLTP-------------LIKLDELDLSGNHLSAIR 223

Query: 530 PSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRL---QGHIFSEKFNLT 586
           P SF  +  L++L +  +Q+   I         SL  + L++N L      +F+    L 
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFT---PLH 279

Query: 587 NLMTLQLDGNNF 598
           +L  + L  N +
Sbjct: 280 HLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 95.2 bits (237), Expect = 1e-20
 Identities = 51/224 (22%), Positives = 85/224 (37%), Gaps = 20/224 (8%)

Query: 3   ASLFTPFQQLESLDLSWNNIAGCVQNESLER--LSRLTNLKFLYLNDNHFNNSIFSSLGG 60
            + F   + LE L LS N+I       ++E    + L NL  L L DN        +   
Sbjct: 81  VNSFKHLRHLEILQLSRNHIR------TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY 134

Query: 61  LSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTG-NAIENLVVPKDFRGLRKLNTLYL 119
           LS L+ L L +N +  SI     N + +L  LD+     +  +     F GL  L  L L
Sbjct: 135 LSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYI-SEGAFEGLSNLRYLNL 192

Query: 120 GGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHV 179
               +  I       ++  L  L  L LS       +         +L++L + +S + V
Sbjct: 193 AMCNLREI------PNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQV 245

Query: 180 SQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMG 223
            +   +  +  SL  +++    L   L    F    +LE + + 
Sbjct: 246 IE-RNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLH 287

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.0 bits (234), Expect = 3e-20
 Identities = 55/254 (21%), Positives = 94/254 (37%), Gaps = 31/254 (12%)

Query: 9   FQQLESLDLSWNNIAGCVQNESLER--LSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRH 66
                 L+L  N I        ++      L +L+ L L+ NH       +  GL++L  
Sbjct: 63  STNTRLLNLHENQIQ------IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNT 116

Query: 67  LSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGS-GIP 125
           L L DNRL  +I       LS L+EL +  N IE++     F  +  L  L LG    + 
Sbjct: 117 LELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRRLDLGELKRLS 174

Query: 126 RIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQS 185
            I       +   L +L+ L L+    +       L     L+EL L  + L   +   S
Sbjct: 175 YISE----GAFEGLSNLRYLNLAMCNLREI---PNLTPLIKLDELDLSGNHLSAIR-PGS 226

Query: 186 IASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGE----SM 241
                 L+ L M    ++  +    F   ++L  +++         N L ++       +
Sbjct: 227 FQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINL-------AHNNLTLLPHDLFTPL 278

Query: 242 PSLNFLSLTNSSLN 255
             L  + L ++  N
Sbjct: 279 HHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 91.7 bits (228), Expect = 2e-19
 Identities = 65/323 (20%), Positives = 106/323 (32%), Gaps = 55/323 (17%)

Query: 38  TNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGN 97
           TN + L L++N       +S   L  L  L L+ N +  +I+I   N L+NL  L++  N
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN 122

Query: 98  AIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVV 157
            +  +     F  L KL  L+L  + I  I       +   +PSL+ L L   K    + 
Sbjct: 123 RLTTI-PNGAFVYLSKLKELWLRNNPIESIPSY----AFNRIPSLRRLDLGELKRLSYIS 177

Query: 158 NQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNL 217
                  +NL  L L          L+ I + T L                        L
Sbjct: 178 EGAFEGLSNLRYLNLAMC------NLREIPNLTPL----------------------IKL 209

Query: 218 EYLDMGWVQVDVNTNFLQIVGE----SMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGL 273
           + LD+         N L  +       +  L  L +  S +    I       L  L  +
Sbjct: 210 DELDLSG-------NHLSAIRPGSFQGLMHLQKLWMIQSQI--QVIERNAFDNLQSLVEI 260

Query: 274 YIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNN-DLRGSL 332
            +  N+L          +  L+ ++   N    N     C+++ L     D         
Sbjct: 261 NLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN-----CDILWLSWWIKDMAPSNTACC 315

Query: 333 PLCL--ANLTSLRVLDVSYNQLT 353
             C    NL    + ++  N  T
Sbjct: 316 ARCNTPPNLKGRYIGELDQNYFT 338

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.0 bits (221), Expect = 1e-18
 Identities = 55/242 (22%), Positives = 95/242 (39%), Gaps = 21/242 (8%)

Query: 242 PSLNFLSLTNSSLNKHTILDQG-LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYAS 300
            +   L+L     N+  I+       L HL+ L +  N +R         + +L  L   
Sbjct: 64  TNTRLLNLHE---NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120

Query: 301 SNQLTGNISPG-LCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVS-YNQLTENISS 358
            N+LT  I  G    L  L++L++ NN +          + SLR LD+    +L+  IS 
Sbjct: 121 DNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY-ISE 178

Query: 359 SSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLT 418
            +   L+++  L L+  +  +IP     L  L KL   +   N  +     S      L 
Sbjct: 179 GAFEGLSNLRYLNLAMCNLREIP----NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234

Query: 419 SISLSG----YVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANN 474
            + +       ++   F     +   L  +NL+H NL+   P+ L     +LE + L +N
Sbjct: 235 KLWMIQSQIQVIERNAF----DNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

Query: 475 SL 476
             
Sbjct: 290 PW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 87.1 bits (216), Expect = 4e-18
 Identities = 40/206 (19%), Positives = 78/206 (37%), Gaps = 23/206 (11%)

Query: 6   FTPFQQLESLDLSWNNIAGCVQNESLER--LSRLTNLKFLYLNDNHFNNSIFSSLGGLSS 63
           F     L +L+L  N +       ++       L+ LK L+L +N   +    +   + S
Sbjct: 108 FNGLANLNTLELFDNRL------TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161

Query: 64  LRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSG 123
           LR L L + +    I       LSNL  L++    +  +    +   L KL+ L L G+ 
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI---PNLTPLIKLDELDLSGNH 218

Query: 124 IPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLL 183
           +  I       S   L  L+ L++  ++ +  +      N  +L E+ L  ++L +    
Sbjct: 219 LSAIRP----GSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLP-H 272

Query: 184 QSIASFTSLKHLSMQ------DCVLK 203
                   L+ + +       +C + 
Sbjct: 273 DLFTPLHHLERIHLHHNPWNCNCDIL 298

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.2 bits (115), Expect = 9e-06
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 3/96 (3%)

Query: 833 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 892
           I T+   ++L  N++         +L  +  L LS N++       F+ L  + +L+L  
Sbjct: 62  ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121

Query: 893 NLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRA 927
           N L   IP    V L+ L+   +  N +   IP  A
Sbjct: 122 NRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYA 155

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
           L  +  +DLS N L+   P     L  +  L +  + +       F NL+ +  ++L++N
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265

Query: 894 LLHGKIPPQLIV-LNTLEVFKVAYNNL 919
            L   +P  L   L+ LE   + +N  
Sbjct: 266 NLT-LLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPT-TFSNLKQIESLDLS 891
           L+ +  + L  N +   IP+     +  +  L+L        I    F  L  +  L+L+
Sbjct: 135 LSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193

Query: 892 YNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA 927
              L     P L  L  L+   ++ N+LS  I   +
Sbjct: 194 MCNLRE--IPNLTPLIKLDELDLSGNHLS-AIRPGS 226

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  110 bits (278), Expect = 9e-26
 Identities = 58/232 (25%), Positives = 95/232 (40%), Gaps = 11/232 (4%)

Query: 513 PGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNN 572
                LNL  N        +F  +  LE L +  N +  +I      G  SL  L L +N
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDN 133

Query: 573 RLQGHIFSEKF-NLTNLMTLQLDGNNFIGEIPE-SLSKCYMLRGLYLSDNHLFGKIPR-W 629
            L   I S  F  L+ L  L L  N  I  IP  + ++   L  L L +      I    
Sbjct: 134 WLT-VIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191

Query: 630 LGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSP-ASIEQVHL 688
              L  L+Y+ +   N++  +P        L+ L++S N      P  F   +S++++ +
Sbjct: 192 FEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249

Query: 689 SKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRI-DRLPQLNYLLLAHN 739
             +++     +       LV L+L++N+L  S+P+ +   L  L  L L HN
Sbjct: 250 MNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  107 bits (268), Expect = 2e-24
 Identities = 58/265 (21%), Positives = 99/265 (37%), Gaps = 27/265 (10%)

Query: 465 NLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNA 524
               ++     L     +P         L++  N  Q  I  +   +L  L  L L RN+
Sbjct: 55  QFSKVVCTRRGLS---EVPQGIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNS 110

Query: 525 FNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRL---QGHIFSE 581
                  +F  +  L  L++ +N LT  IP         L  L L NN +     + F+ 
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFN- 168

Query: 582 KFNLTNLMTLQLDGNNFIGEIPE-SLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYII 640
              + +LM L L     +  I E +    + L+ L L   ++   +P  L  L  L+ + 
Sbjct: 169 --RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELE 224

Query: 641 MPNNNLEGPIPIEFCQRDSLKILDLSNNSI-------FGTLPSCFSPASIEQVHLSKNKI 693
           M  N+     P  F    SLK L + N+ +       F  L S      + +++L+ N +
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS------LVELNLAHNNL 278

Query: 694 EGRLESIIHDNPHLVTLDLSYNSLH 718
                 +     +LV L L +N  +
Sbjct: 279 SSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 93.7 bits (233), Expect = 5e-20
 Identities = 58/255 (22%), Positives = 88/255 (34%), Gaps = 33/255 (12%)

Query: 9   FQQLESLDLSWNNIAGCVQNESLER--LSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRH 66
                 L+L  NNI        ++      L +L+ L L  N        +  GL+SL  
Sbjct: 74  PSNTRYLNLMENNIQ------MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNT 127

Query: 67  LSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSG-IP 125
           L L DN L   I       LS L EL +  N IE++     F  +  L  L LG    + 
Sbjct: 128 LELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLMRLDLGELKKLE 185

Query: 126 RIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDL-HVSQLLQ 184
            I       +   L +LK L L         +   L     LEEL +  +    +     
Sbjct: 186 YISE----GAFEGLFNLKYLNLGMCNI--KDM-PNLTPLVGLEELEMSGNHFPEIRP--G 236

Query: 185 SIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGE----S 240
           S    +SLK L + +  +   +    F    +L  L++         N L  +       
Sbjct: 237 SFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNL-------AHNNLSSLPHDLFTP 288

Query: 241 MPSLNFLSLTNSSLN 255
           +  L  L L ++  N
Sbjct: 289 LRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 93.3 bits (232), Expect = 5e-20
 Identities = 54/224 (24%), Positives = 86/224 (38%), Gaps = 20/224 (8%)

Query: 3   ASLFTPFQQLESLDLSWNNIAGCVQNESLER--LSRLTNLKFLYLNDNHFNNSIFSSLGG 60
           A  F     LE L L  N+I        +E    + L +L  L L DN        +   
Sbjct: 92  ADTFRHLHHLEVLQLGRNSIR------QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY 145

Query: 61  LSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTG-NAIENLVVPKDFRGLRKLNTLYL 119
           LS LR L L +N +  SI     N + +L  LD+     +E +     F GL  L  L L
Sbjct: 146 LSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYI-SEGAFEGLFNLKYLNL 203

Query: 120 GGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHV 179
           G   I  +       ++  L  L+ L +S   F   +     H  ++L++L +  S + +
Sbjct: 204 GMCNIKDM------PNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSL 256

Query: 180 SQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMG 223
            +   +     SL  L++    L  +L    F   + L  L + 
Sbjct: 257 IE-RNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLH 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 92.5 bits (230), Expect = 1e-19
 Identities = 55/242 (22%), Positives = 90/242 (37%), Gaps = 21/242 (8%)

Query: 242 PSLNFLSLTNSSLNKHTILDQG-LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYAS 300
            +  +L+L     N   ++       L HL+ L +  N +R         + SL  L   
Sbjct: 75  SNTRYLNLME---NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131

Query: 301 SNQLTGNISPG-LCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVS-YNQLTENISS 358
            N LT  I  G    L  LR+L++ NN +          + SL  LD+    +L   IS 
Sbjct: 132 DNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY-ISE 189

Query: 359 SSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLT 418
            +   L +++ L L   +   +P +L PL  L +L+             +  L+    L 
Sbjct: 190 GAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLS---SLK 245

Query: 419 SISLSG----YVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANN 474
            + +       ++   F         L  +NL+H NLS   P+ L      L  L L +N
Sbjct: 246 KLWVMNSQVSLIERNAFD----GLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

Query: 475 SL 476
             
Sbjct: 301 PW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.7 bits (228), Expect = 2e-19
 Identities = 58/323 (17%), Positives = 102/323 (31%), Gaps = 55/323 (17%)

Query: 38  TNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGN 97
           +N ++L L +N+       +   L  L  L L  N +   I++   N L++L  L++  N
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDN 133

Query: 98  AIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVV 157
            +  +     F  L KL  L+L  + I  I       +   +PSL  L L   K    + 
Sbjct: 134 WLTVI-PSGAFEYLSKLRELWLRNNPIESIPSY----AFNRVPSLMRLDLGELKKLEYIS 188

Query: 158 NQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNL 217
                   NL+ L L          ++ + + T L                        L
Sbjct: 189 EGAFEGLFNLKYLNLGMC------NIKDMPNLTPL----------------------VGL 220

Query: 218 EYLDMGWVQVDVNTNFLQIVGE----SMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGL 273
           E L+M         N    +       + SL  L + NS +    I       L  L  L
Sbjct: 221 EELEMSG-------NHFPEIRPGSFHGLSSLKKLWVMNSQV--SLIERNAFDGLASLVEL 271

Query: 274 YIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRG-SL 332
            +  N+L          +  L  L+   N    +     C+++ L     +         
Sbjct: 272 NLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD-----CDILWLAWWLREYIPTNSTCC 326

Query: 333 PLCL--ANLTSLRVLDVSYNQLT 353
             C    ++    +++V      
Sbjct: 327 GRCHAPMHMRGRYLVEVDQASFQ 349

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 87.9 bits (218), Expect = 3e-18
 Identities = 41/204 (20%), Positives = 76/204 (37%), Gaps = 19/204 (9%)

Query: 6   FTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLR 65
           F     L +L+L  N +   + + +      L+ L+ L+L +N   +    +   + SL 
Sbjct: 119 FNGLASLNTLELFDNWLTV-IPSGAF---EYLSKLRELWLRNNPIESIPSYAFNRVPSLM 174

Query: 66  HLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIP 125
            L L + +    I       L NL+ L++    I+++    +   L  L  L + G+  P
Sbjct: 175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM---PNLTPLVGLEELEMSGNHFP 231

Query: 126 RIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQS 185
            I       S   L SLK L++ +++    +         +L EL L  ++L        
Sbjct: 232 EIRPG----SFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLP-HDL 285

Query: 186 IASFTSLKHLSMQ------DCVLK 203
                 L  L +       DC + 
Sbjct: 286 FTPLRYLVELHLHHNPWNCDCDIL 309

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 3/96 (3%)

Query: 833 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 892
           I ++   ++L  N +         +L  +  L L  N++       F+ L  + +L+L  
Sbjct: 73  IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132

Query: 893 NLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRA 927
           N L   IP      L+ L    +  N +   IP  A
Sbjct: 133 NWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYA 166

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.9 bits (109), Expect = 6e-05
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
           L  +  +++S N      P     L+ +  L + ++ ++      F  L  +  L+L++N
Sbjct: 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276

Query: 894 LLHGKIPPQLIV-LNTLEVFKVAYNNL 919
            L   +P  L   L  L    + +N  
Sbjct: 277 NLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 8/97 (8%)

Query: 834 LTSMSGIDLS-CNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 891
           + S+  +DL    KL   I       L  +  LNL   N+   +P   + L  +E L++S
Sbjct: 170 VPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMS 226

Query: 892 YNLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRA 927
            N    +I P     L++L+   V  + +S  I   A
Sbjct: 227 GNHFP-EIRPGSFHGLSSLKKLWVMNSQVS-LIERNA 261

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  108 bits (271), Expect = 1e-25
 Identities = 61/285 (21%), Positives = 116/285 (40%), Gaps = 24/285 (8%)

Query: 492 TLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTG 551
            LD+ NN     I       L  L  L L  N  +   P +FA +  LERL +S NQL  
Sbjct: 56  LLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113

Query: 552 EIPERMATGCFSLEILALSNNRLQGHIFSEKF-NLTNLMTLQLDGNNF-IGEIPE-SLSK 608
           E+PE+M     +L+ L +  N +   +    F  L  ++ ++L  N      I   +   
Sbjct: 114 ELPEKMPK---TLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169

Query: 609 CYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNN 668
              L  + ++D ++   IP+  G  P+L  + +  N +           ++L  L LS N
Sbjct: 170 MKKLSYIRIADTNI-TTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226

Query: 669 SIFGTLPSCFSP-ASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNR--- 724
           SI        +    + ++HL+ NK+  ++   + D+ ++  + L  N++  +I +    
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFC 284

Query: 725 ----IDRLPQLNYLLLAHNYIK-GEIPVQLCQ-LKEVRLIDLSHN 763
                 +    + + L  N ++  EI     + +     + L + 
Sbjct: 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (264), Expect = 9e-25
 Identities = 68/340 (20%), Positives = 117/340 (34%), Gaps = 75/340 (22%)

Query: 269 HLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPG-LCELVLLRKLYIDNND 327
               L +++N + +       N+ +L  L   +N+++  ISPG    LV L +LY+  N 
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQ 111

Query: 328 LRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPL 387
           L+  LP  +    +L+ L V  N++T+ +  S    L  +  + L  N      I     
Sbjct: 112 LK-ELPEKM--PKTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 388 FNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLS 447
             + KL                       +T+I        G  P            +L+
Sbjct: 168 QGMKKLSYIRIADT--------------NITTIP------QGLPP------------SLT 195

Query: 448 HLNLSG----EFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGH 503
            L+L G    +     L+   NL  L L+ NS+                           
Sbjct: 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI-------------------------SA 230

Query: 504 IPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLT-----GEIPERMA 558
           +        P L EL+L+ N     +P   AD K ++ + + NN ++        P    
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 289

Query: 559 TGCFSLEILALSNNRLQGH-IFSEKF-NLTNLMTLQLDGN 596
           T   S   ++L +N +Q   I    F  +     +QL   
Sbjct: 290 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  101 bits (254), Expect = 2e-23
 Identities = 60/231 (25%), Positives = 102/231 (44%), Gaps = 11/231 (4%)

Query: 539 LERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKF-NLTNLMTLQLDGNN 597
              LD+ NN++T EI +       +L  L L NN++   I    F  L  L  L L  N 
Sbjct: 54  TALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQ 111

Query: 598 FIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNL-EGPIPIE-FC 655
            + E+PE + K   L+ L + +N +          L  +  + +  N L    I    F 
Sbjct: 112 -LKELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 656 QRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYN 715
               L  + +++ +I  T+P    P S+ ++HL  NKI     + +    +L  L LS+N
Sbjct: 169 GMKKLSYIRIADTNI-TTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226

Query: 716 SLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 766
           S+       +   P L  L L +N +  ++P  L   K ++++ L +NN+S
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  100 bits (250), Expect = 7e-23
 Identities = 60/335 (17%), Positives = 111/335 (33%), Gaps = 59/335 (17%)

Query: 242 PSLNFLSLTNSSLNKHTILDQG-LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYAS 300
           P    L L N   NK T +  G    L +L  L + +N +    P   A +  L+ LY S
Sbjct: 52  PDTALLDLQN---NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108

Query: 301 SNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTE-NISSS 359
            NQL   +   +     L++L +  N++          L  + V+++  N L    I + 
Sbjct: 109 KNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165

Query: 360 SLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTS 419
           +   +  +  + +++ +   IP  L        L   + + N              ++T 
Sbjct: 166 AFQGMKKLSYIRIADTNITTIPQGL-----PPSLTELHLDGN--------------KITK 206

Query: 420 ISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGS 479
           +              L   ++L  + LS  ++S    N  L N  +L  L L NN L   
Sbjct: 207 VD----------AASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKL-VK 254

Query: 480 FRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKML 539
               +  H+ +  + + NN                     +  N F    P         
Sbjct: 255 VPGGLADHKYIQVVYLHNNNIS-----------------AIGSNDFCP--PGYNTKKASY 295

Query: 540 ERLDISNNQLT-GEIPERMATGCFSLEILALSNNR 573
             + + +N +   EI        +    + L N +
Sbjct: 296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 97.8 bits (244), Expect = 3e-22
 Identities = 68/370 (18%), Positives = 116/370 (31%), Gaps = 100/370 (27%)

Query: 12  LESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLAD 71
              LDL  N I   +++        L NL  L L +N  +     +   L  L  L L+ 
Sbjct: 54  TALLDLQNNKITE-IKDGD---FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109

Query: 72  NRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGG-----SGIPR 126
           N+L   +          L+EL +  N I  +     F GL ++  + LG      SGI  
Sbjct: 110 NQLK-ELPE---KMPKTLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIEN 164

Query: 127 IDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSI 186
                   +   +  L  + ++ T    T + Q L    +L EL LD + +         
Sbjct: 165 -------GAFQGMKKLSYIRIADTNI--TTIPQGL--PPSLTELHLDGNKIT-------- 205

Query: 187 ASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNF 246
                              +         NL  L + +                    N 
Sbjct: 206 ------------------KVDAASLKGLNNLAKLGLSF--------------------NS 227

Query: 247 LSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTG 306
           +S          + +  L    HL+ L++ +N L   +P  LA+   +QV+Y  +N ++ 
Sbjct: 228 IS---------AVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNIS- 276

Query: 307 NISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLT-ENISSSSLMHLT 365
                           I +ND     P       S   + +  N +    I  S+   + 
Sbjct: 277 ---------------AIGSNDFCP--PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319

Query: 366 SIEELILSNN 375
               + L N 
Sbjct: 320 VRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 93.9 bits (234), Expect = 7e-21
 Identities = 57/338 (16%), Positives = 107/338 (31%), Gaps = 89/338 (26%)

Query: 2   NASLFTPFQQLESLDLSWNNIAGCVQNESLER--LSRLTNLKFLYLNDNHFNNSIFSSL- 58
               F   + L +L L  N I        +     + L  L+ LYL+ N         L 
Sbjct: 68  KDGDFKNLKNLHTLILINNKI------SKISPGAFAPLVKLERLYLSKNQ-----LKELP 116

Query: 59  -GGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKD-FRGLRKLNT 116
                +L+ L + +N +   +     N L+ +  +++  N +++  +    F+G++KL+ 
Sbjct: 117 EKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175

Query: 117 LYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESD 176
           + +  + I  I         G  PSL  L+L   K    V    L    NL +L L    
Sbjct: 176 IRIADTNITTIPQ-------GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLS--- 224

Query: 177 LHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQI 236
                 + ++ + +                         N                    
Sbjct: 225 ---FNSISAVDNGS-----------------------LANT------------------- 239

Query: 237 VGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRD------GLPWCLAN 290
                P L  L L N+ L     +  GL    ++Q +Y+ +N++          P     
Sbjct: 240 -----PHLRELHLNNNKL---VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291

Query: 291 MTSLQVLYASSNQLT-GNISPGLCE-LVLLRKLYIDNN 326
             S   +   SN +    I P     + +   + + N 
Sbjct: 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 82.0 bits (203), Expect = 9e-17
 Identities = 59/317 (18%), Positives = 104/317 (32%), Gaps = 79/317 (24%)

Query: 87  SNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLY 146
            +   LD+  N I  +    DF+ L+ L+TL L  + I +I       +   L  L+ LY
Sbjct: 52  PDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISP----GAFAPLVKLERLY 106

Query: 147 LSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGAL 206
           LS  +     + +K+     L+EL + E+       +  +                    
Sbjct: 107 LSKNQL--KELPEKM--PKTLQELRVHEN------EITKVRKSV---------------- 140

Query: 207 HGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQ 266
               F     +  +++G        N   +    + +  F  +                 
Sbjct: 141 ----FNGLNQMIVVELGT-------N--PLKSSGIENGAFQGMKK--------------- 172

Query: 267 LVHLQGLYIRDNDLR---DGLPWCLANMTSLQVLYASSNQLTGNISPG-LCELVLLRKLY 322
              L  + I D ++     GLP       SL  L+   N++T  +    L  L  L KL 
Sbjct: 173 ---LSYIRIADTNITTIPQGLP------PSLTELHLDGNKIT-KVDAASLKGLNNLAKLG 222

Query: 323 IDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPI 382
           +  N +       LAN   LR L ++ N+L +      L     I+ + L NN+   I  
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNNISAIGS 280

Query: 383 S----LEPLFNLSKLQT 395
           +           +    
Sbjct: 281 NDFCPPGYNTKKASYSG 297

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 28/148 (18%), Positives = 47/148 (31%), Gaps = 13/148 (8%)

Query: 9   FQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLS 68
              L  L L  N I           L  L NL  L L+ N  +     SL     LR L 
Sbjct: 191 PPSLTELHLDGNKI----TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246

Query: 69  LADNRLNGSIDIKGLNSLSNLEELDMTGNAIENL-----VVPKDFRGLRKLNTLYLGGSG 123
           L +N+L   +   GL     ++ + +  N I  +       P         + + L  + 
Sbjct: 247 LNNNKLV-KVP-GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304

Query: 124 IPRIDGSKVLQSIGSLPSLKTLYLSHTK 151
           +   +      +   +     + L + K
Sbjct: 305 VQYWEIQP--STFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.2 bits (118), Expect = 4e-06
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 833 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 892
           +    + +DL  NK+T         L  +H L L +N ++   P  F+ L ++E L LS 
Sbjct: 50  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109

Query: 893 NLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA 927
           N L  ++P ++    TL+  +V  N ++ K+    
Sbjct: 110 NQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSV 140

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 841 DLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 899
            L  NK+T ++       L  +  L LS N+++     + +N   +  L L+ N L  K+
Sbjct: 198 HLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255

Query: 900 PPQLIVLNTLEVFKVAYNNLS 920
           P  L     ++V  +  NN+S
Sbjct: 256 PGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
           +  +S I ++   +T  IP   G    +  L+L  N +T     +   L  +  L LS+N
Sbjct: 170 MKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226

Query: 894 LLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPD 925
            +   +    +     L    +  N L  K+P 
Sbjct: 227 SIS-AVDNGSLANTPHLRELHLNNNKLV-KVPG 257

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
           L  +  + LS N+L  E+P        +  L +  N +T    + F+ L Q+  ++L  N
Sbjct: 99  LVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155

Query: 894 LLH-GKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRA 927
            L    I       +  L   ++A  N++  IP   
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL 190

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  101 bits (253), Expect = 2e-23
 Identities = 56/243 (23%), Positives = 90/243 (37%), Gaps = 11/243 (4%)

Query: 503 HIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLT-GEIPERMATGC 561
            +P  I         L L  N         F  +  L +L +S+N L+      +   G 
Sbjct: 21  SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77

Query: 562 FSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPES--LSKCYMLRGLYLSD 619
            SL+ L LS N +   + S    L  L  L    +N + ++ E         L  L +S 
Sbjct: 78  TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISH 135

Query: 620 NHLFGKIPRWLGNLPTLQYIIMPNNN-LEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCF 678
            H           L +L+ + M  N+  E  +P  F +  +L  LDLS   +    P+ F
Sbjct: 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195

Query: 679 SP-ASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLP-QLNYLLL 736
           +  +S++ +++S N               L  LD S N +  S    +   P  L +L L
Sbjct: 196 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255

Query: 737 AHN 739
             N
Sbjct: 256 TQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 94.7 bits (236), Expect = 3e-21
 Identities = 60/256 (23%), Positives = 101/256 (39%), Gaps = 25/256 (9%)

Query: 133 LQSI--GSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQL-LQSIASF 189
           L S+  G   S   L L   K + ++ +      T L +L L  + L       QS    
Sbjct: 19  LTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77

Query: 190 TSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGE-----SMPSL 244
           TSLK+L +    +   +   +FL  + LE+LD          + L+ + E     S+ +L
Sbjct: 78  TSLKYLDLSFNGVI-TMSS-NFLGLEQLEHLDF-------QHSNLKQMSEFSVFLSLRNL 128

Query: 245 NFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPW-CLANMTSLQVLYASSNQ 303
            +L ++++        +     L  L+ L +  N  ++         + +L  L  S  Q
Sbjct: 129 IYLDISHTHT--RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186

Query: 304 LTGNISPG-LCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLM 362
           L   +SP     L  L+ L + +N+           L SL+VLD S N +        L 
Sbjct: 187 LE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQ 244

Query: 363 HL-TSIEELILSNNHF 377
           H  +S+  L L+ N F
Sbjct: 245 HFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 93.9 bits (234), Expect = 5e-21
 Identities = 55/253 (21%), Positives = 95/253 (37%), Gaps = 32/253 (12%)

Query: 9   FQQLESLDLSWNNIAGCVQNESLER--LSRLTNLKFLYLNDNHFNNSIFSS--LGGLSSL 64
                 L+L  N +      +SL      +LT L  L L+ N  +     S    G +SL
Sbjct: 27  PSSATRLELESNKL------QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL 80

Query: 65  RHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGI 124
           ++L L+ N +  ++       L  LE LD   + ++ +     F  LR L  L +  +  
Sbjct: 81  KYLDLSFNGVI-TMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138

Query: 125 PRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDL-HVSQLL 183
                + +      L SL+ L ++   F+   +        NL  L L +  L  +S   
Sbjct: 139 RVAF-NGIFN---GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-- 192

Query: 184 QSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESM-- 241
            +  S +SL+ L+M       +L    +    +L+ LD        + N +    +    
Sbjct: 193 TAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDY-------SLNHIMTSKKQELQ 244

Query: 242 ---PSLNFLSLTN 251
               SL FL+LT 
Sbjct: 245 HFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.0 bits (229), Expect = 2e-20
 Identities = 44/239 (18%), Positives = 76/239 (31%), Gaps = 28/239 (11%)

Query: 239 ESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLY 298
           + +  L  LSL+++ L+      Q       L+ L +  N +   +      +  L+ L 
Sbjct: 49  DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD 107

Query: 299 ASSNQLTGNISPGL-CELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENIS 357
              + L       +   L  L  L I +   R +       L+SL VL ++ N   EN  
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167

Query: 358 SSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQL 417
                 L ++  L LS     Q+  +     +LS LQ  N   N                
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQLSPTA--FNSLSSLQVLNMSHN--------------NF 211

Query: 418 TSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSL 476
            S+                  + L  ++ S  ++       L    ++L  L L  N  
Sbjct: 212 FSLD----------TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 89.7 bits (223), Expect = 1e-19
 Identities = 52/311 (16%), Positives = 101/311 (32%), Gaps = 82/311 (26%)

Query: 340 TSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGE 399
           +S   L++  N+L  ++       LT + +L LS+N         +  F  + L+  +  
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 400 INAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWL 459
            N               + ++S         F                            
Sbjct: 87  FN--------------GVITMS-------SNF---------------------------- 97

Query: 460 LENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELN 519
                 LE L   +++L           ++++   VF +             L  L+ L+
Sbjct: 98  -LGLEQLEHLDFQHSNL-----------KQMSEFSVFLS-------------LRNLIYLD 132

Query: 520 LSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQ---G 576
           +S      +    F  +  LE L ++ N         + T   +L  L LS  +L+    
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192

Query: 577 HIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPT- 635
             F+   +L++L  L +  NNF             L+ L  S NH+     + L + P+ 
Sbjct: 193 TAFN---SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249

Query: 636 LQYIIMPNNNL 646
           L ++ +  N+ 
Sbjct: 250 LAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 89.7 bits (223), Expect = 1e-19
 Identities = 59/295 (20%), Positives = 99/295 (33%), Gaps = 64/295 (21%)

Query: 38  TNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLN-GSIDIKGLNSLSNLEELDMTG 96
           ++   L L  N   +        L+ L  LSL+ N L+      +     ++L+ LD++ 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 97  NAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTV 156
           N +  +    +F GL +L  L    S + ++    V     SL +L  L +SHT     V
Sbjct: 88  NGVITM--SSNFLGLEQLEHLDFQHSNLKQMSEFSVFL---SLRNLIYLDISHTHT--RV 140

Query: 157 VNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKN 216
               +  F  L                      +SL+ L M     +       F + +N
Sbjct: 141 AFNGI--FNGL----------------------SSLEVLKMAGNSFQENFLPDIFTELRN 176

Query: 217 LEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIR 276
           L +LD+           L+     +    F SL++                  LQ L + 
Sbjct: 177 LTFLDLSQ-------CQLE----QLSPTAFNSLSS------------------LQVLNMS 207

Query: 277 DNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVL--LRKLYIDNNDLR 329
            N+      +    + SLQVL  S N +         +     L  L +  ND  
Sbjct: 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 86.6 bits (215), Expect = 2e-18
 Identities = 44/173 (25%), Positives = 68/173 (39%), Gaps = 8/173 (4%)

Query: 6   FTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLR 65
           F   +QLE LD   +N+   +   S+     L NL +L ++  H   +      GLSSL 
Sbjct: 97  FLGLEQLEHLDFQHSNL-KQMSEFSV--FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153

Query: 66  HLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIP 125
            L +A N    +        L NL  LD++   +E L  P  F  L  L  L +  +   
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL-SPTAFNSLSSLQVLNMSHNNFF 212

Query: 126 RIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLH 178
            +D          L SL+ L  S      +   +  H  ++L  L L ++D  
Sbjct: 213 SLDTF----PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 46/221 (20%), Positives = 83/221 (37%), Gaps = 11/221 (4%)

Query: 3   ASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLS 62
             +F    QL  L LS N ++   +    +     T+LK+L L+ N    ++ S+  GL 
Sbjct: 45  HGVFDKLTQLTKLSLSSNGLS--FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLE 101

Query: 63  SLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGS 122
            L HL    + L    +     SL NL  LD++            F GL  L  L + G+
Sbjct: 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGN 160

Query: 123 GIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQL 182
                    +      L +L  L LS  + +  +     ++ ++L+ L +  ++      
Sbjct: 161 SFQENFLPDIFT---ELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLD- 215

Query: 183 LQSIASFTSLKHLSMQDCVLKGALHGQDFLKF-KNLEYLDM 222
                   SL+ L      +      Q+   F  +L +L++
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNL 255

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.1 bits (180), Expect = 4e-14
 Identities = 42/188 (22%), Positives = 73/188 (38%), Gaps = 12/188 (6%)

Query: 590 TLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLE-- 647
            ++ +       +P  +        L L  N L          L  L  + + +N L   
Sbjct: 11  EIRCNSKGLT-SVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 648 GPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSP-ASIEQVHLSKNKIEGRLE-SIIHDNP 705
           G          SLK LDLS N +  T+ S F     +E +    + ++   E S+     
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126

Query: 706 HLVTLDLSYNSLHGSIPNRI-DRLPQLNYLLLAHN-YIKGEIPVQLCQLKEVRLIDLSHN 763
           +L+ LD+S+        N I + L  L  L +A N + +  +P    +L+ +  +DLS  
Sbjct: 127 NLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185

Query: 764 NLSGRIPP 771
            L  ++ P
Sbjct: 186 QLE-QLSP 192

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 2   NASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGL 61
              +F     LE L ++ N+       +     + L NL FL L+         ++   L
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQCQLEQLSPTAFNSL 198

Query: 62  SSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGL-RKLNTLYLG 120
           SSL+ L+++ N    S+D      L++L+ LD + N I      ++ +     L  L L 
Sbjct: 199 SSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTS-KKQELQHFPSSLAFLNLT 256

Query: 121 G 121
            
Sbjct: 257 Q 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 4/100 (4%)

Query: 833 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLT--GTIPTTFSNLKQIESLDL 890
           I +S + ++L  NKL          LT++  L+LS N L+  G    +      ++ LDL
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 891 SYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFS 930
           S+N +   +    + L  LE     ++NL  ++ + + F 
Sbjct: 86  SFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFL 123

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 834 LTSMSGIDLSCNKLT--GEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLS 891
           LT ++ + LS N L+  G         T +  L+LS N +  T+ + F  L+Q+E LD  
Sbjct: 51  LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQ 109

Query: 892 YNLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRA 927
           ++ L       + + L  L    +++ +      +  
Sbjct: 110 HSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGI 145

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 892
           L +++ +DLS  +L  ++       L+ +  LN+SHNN        +  L  ++ LD S 
Sbjct: 174 LRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232

Query: 893 NLL 895
           N +
Sbjct: 233 NHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 5/83 (6%)

Query: 840 IDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK- 898
           I  +   LT  +PT I   +    L L  N L       F  L Q+  L LS N L  K 
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 899 -IPPQLIVLNTLEVFKVAYNNLS 920
                     +L+   +++N + 
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVI 91

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  101 bits (253), Expect = 4e-23
 Identities = 55/267 (20%), Positives = 103/267 (38%), Gaps = 19/267 (7%)

Query: 513 PGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNN 572
             +  L+LS N       S       L+ L +++N +   I E   +   SLE L LS N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 573 RLQGHIFSEKF-NLTNLMTLQLDGNNFIGEIPES--LSKCYMLRGLYLSDNHLFGKIP-R 628
            L  ++ S  F  L++L  L L GN     + E+   S    L+ L + +   F KI  +
Sbjct: 111 YLS-NLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168

Query: 629 WLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSP-ASIEQVH 687
               L  L+ + +  ++L+   P       ++  L L        L       +S+E + 
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228

Query: 688 LSKNKIEG----RLESIIHDN----PHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHN 739
           L    ++      L +   ++         + ++  SL   +   ++++  L  L  + N
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRN 287

Query: 740 YIKGEIPVQLCQ-LKEVRLIDLSHNNL 765
            +K  +P  +   L  ++ I L  N  
Sbjct: 288 QLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 93.6 bits (233), Expect = 1e-20
 Identities = 67/323 (20%), Positives = 107/323 (33%), Gaps = 73/323 (22%)

Query: 12  LESLDLSWNNIAGCVQNESLER--LSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSL 69
           ++SLDLS N I        +    L R  NL+ L L  N  N     S   L SL HL L
Sbjct: 54  VKSLDLSNNRI------TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107

Query: 70  ADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDG 129
           + N L  ++       LS+L  L++ GN  + L     F  L KL  L +G         
Sbjct: 108 SYNYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT----- 161

Query: 130 SKVLQSI-----GSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQ 184
                 I       L  L+ L +  +  + +   + L +  N+  LIL            
Sbjct: 162 ---FTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHI------ 211

Query: 185 SIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSL 244
                                L         ++E L++    +D            + + 
Sbjct: 212 --------------------LLLEIFVDVTSSVECLELRDTDLDTFH------FSELSTG 245

Query: 245 NFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQL 304
              SL                     + + I D  L   +   L  ++ L  L  S NQL
Sbjct: 246 ETNSLIK---------------KFTFRNVKITDESLFQ-VMKLLNQISGLLELEFSRNQL 289

Query: 305 TGNISPGLCE-LVLLRKLYIDNN 326
             ++  G+ + L  L+K+++  N
Sbjct: 290 K-SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 92.1 bits (229), Expect = 4e-20
 Identities = 58/295 (19%), Positives = 111/295 (37%), Gaps = 37/295 (12%)

Query: 87  SNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLY 146
             ++ LD++ N I  +    D +    L  L L  +GI  I+      S  SL SL+ L 
Sbjct: 52  EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGINTIEE----DSFSSLGSLEHLD 106

Query: 147 LSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGAL 206
           LS+      + +      ++L  L L  +           +  T L+ L + +      +
Sbjct: 107 LSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165

Query: 207 HGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGE----SMPSLNFLSLTNSSLNKHTILDQ 262
             +DF     LE L++       + + LQ        S+ +++ L L         +L+ 
Sbjct: 166 QRKDFAGLTFLEELEI-------DASDLQSYEPKSLKSIQNVSHLILHMKQHI--LLLEI 216

Query: 263 GLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLY 322
            +     ++ L +RD DL                     ++L+   +  L +    R + 
Sbjct: 217 FVDVTSSVECLELRDTDLD----------------TFHFSELSTGETNSLIKKFTFRNVK 260

Query: 323 IDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHF 377
           I +  L   +   L  ++ L  L+ S NQL  ++       LTS++++ L  N +
Sbjct: 261 ITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 92.1 bits (229), Expect = 4e-20
 Identities = 46/265 (17%), Positives = 104/265 (39%), Gaps = 12/265 (4%)

Query: 464 TNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRN 523
             +++L L+NN +       +     L  L + +N     I  +  + L  L  L+LS N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 524 AFNGSIPSS-FADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEK 582
               ++ SS F  +  L  L++  N         + +    L+IL + N      I  + 
Sbjct: 111 YL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 583 F-NLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIM 641
           F  LT L  L++D ++     P+SL     +  L L        +  ++    +++ + +
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL 229

Query: 642 PNNNLEGPIPIE--------FCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKI 693
            + +L+     E          ++ + + + +++ S+F  +      + + ++  S+N++
Sbjct: 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL 289

Query: 694 EGRLESIIHDNPHLVTLDLSYNSLH 718
           +   + I      L  + L  N   
Sbjct: 290 KSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 81.3 bits (201), Expect = 2e-16
 Identities = 56/295 (18%), Positives = 106/295 (35%), Gaps = 39/295 (13%)

Query: 189 FTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGE----SMPSL 244
             ++K L + +  +   +   D  +  NL+ L +        +N +  + E    S+ SL
Sbjct: 51  TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVL-------TSNGINTIEEDSFSSLGSL 102

Query: 245 NFLSLTNSSLNKHTILDQGLCQ-LVHLQGLYIRDNDLRDGLPW-CLANMTSLQVLYASSN 302
             L L+    N  + L     + L  L  L +  N  +        +++T LQ+L   + 
Sbjct: 103 EHLDLSY---NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159

Query: 303 QLTGNISPG-LCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSL 361
                I       L  L +L ID +DL+   P  L ++ ++  L +   Q    +    +
Sbjct: 160 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFV 218

Query: 362 MHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSIS 421
              +S+E L L +        S      LS  +T             +SL  KF   ++ 
Sbjct: 219 DVTSSVECLELRDTDLDTFHFS-----ELSTGET-------------NSLIKKFTFRNVK 260

Query: 422 LSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSL 476
           ++         + L     L  +  S   L    P+ + +  T+L+ + L  N  
Sbjct: 261 IT-DESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 79.4 bits (196), Expect = 7e-16
 Identities = 57/305 (18%), Positives = 106/305 (34%), Gaps = 67/305 (21%)

Query: 3   ASLFTPFQQLESLDLSWNNIAGCVQNESLER--LSRLTNLKFLYLNDNH---FNNSIFSS 57
            S       L++L L+ N I       ++E    S L +L+ L L+ N+    ++S F  
Sbjct: 69  NSDLQRCVNLQALVLTSNGIN------TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK- 121

Query: 58  LGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTL 117
              LSSL  L+L  N      +    + L+ L+ L +        +  KDF GL  L  L
Sbjct: 122 --PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179

Query: 118 YLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDL 177
            +  S +   +     +S+ S+ ++  L L   +    ++   +   +++E L L ++DL
Sbjct: 180 EIDASDLQSYEP----KSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDL 234

Query: 178 HVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIV 237
                 +                     L   +                           
Sbjct: 235 DTFHFSE---------------------LSTGETNSLIKK-------------------- 253

Query: 238 GESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVL 297
                +   + +T+ SL     + + L Q+  L  L    N L+         +TSLQ +
Sbjct: 254 ----FTFRNVKITDESL---FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKI 306

Query: 298 YASSN 302
           +  +N
Sbjct: 307 WLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 68.2 bits (167), Expect = 3e-12
 Identities = 57/357 (15%), Positives = 99/357 (27%), Gaps = 82/357 (22%)

Query: 543 DISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKF-NLTNLMTLQLDGNNFIGE 601
             S+  L   IP  +     +++ L LSNNR+  +I +       NL  L L  N  I  
Sbjct: 37  KGSSGSLN-SIPSGLTE---AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNG-INT 90

Query: 602 IPE-SLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSL 660
           I E S S    L  L LS N+L      W   L                         SL
Sbjct: 91  IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS------------------------SL 126

Query: 661 KILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGS 720
             L+L  N             S+                       L  L +        
Sbjct: 127 TFLNLLGNPY-----KTLGETSL-----------------FSHLTKLQILRVGNMDTFTK 164

Query: 721 IPNRI-DRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLN 779
           I  +    L  L  L +  + ++   P  L  ++ V  + L        +   +     +
Sbjct: 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLE-IFVDVTS 222

Query: 780 EGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSG 839
                E+  T +                 +    +  T +  +             +   
Sbjct: 223 SVECLELRDTDL----------------DTFHFSELSTGETNS--------LIKKFTFRN 258

Query: 840 IDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 896
           + ++   L  ++   +  ++ +  L  S N L       F  L  ++ + L  N   
Sbjct: 259 VKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  100 bits (252), Expect = 4e-23
 Identities = 58/285 (20%), Positives = 105/285 (36%), Gaps = 34/285 (11%)

Query: 503 HIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCF 562
            +P EI    P    L+L  N  +      F  ++ L  L + NN+++ +I E+  +   
Sbjct: 47  AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLR 102

Query: 563 SLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPE-SLSKCYMLRGLYLSDNH 621
            L+ L +S N L   I       ++L+ L++  N  I ++P+   S    +  + +  N 
Sbjct: 103 KLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNP 158

Query: 622 L-FGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSP 680
           L          +   L Y+ +    L G         ++L  L L +N I          
Sbjct: 159 LENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLR 215

Query: 681 -ASIEQVHLSKNKIEGRLESIIHDN-----PHLVTLDLSYNSLHGSIPNRIDRLPQLNYL 734
            + + ++ L  N+I      +I +      P L  L L  N L   +P  +  L  L  +
Sbjct: 216 YSKLYRLGLGHNQI-----RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVV 269

Query: 735 LLAHNYIKGEIPVQ-------LCQLKEVRLIDLSHNNLS-GRIPP 771
            L  N I  ++ V          +      I L +N +    + P
Sbjct: 270 YLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 96.6 bits (241), Expect = 1e-21
 Identities = 59/291 (20%), Positives = 98/291 (33%), Gaps = 31/291 (10%)

Query: 443 SVNLSHLNLSG----EFPNWLLENNTNLETLLLANNSL----FGSFRMPIHSHQKLATLD 494
           S + + L+L      E      +   +L  L+L NN +      +F       +KL  L 
Sbjct: 53  SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFS----PLRKLQKLY 108

Query: 495 VFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIP 554
           +  N     IP  +      L+EL +  N         F+ ++ +  +++  N L     
Sbjct: 109 ISKNHLV-EIPPNL---PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF 164

Query: 555 ERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPE-SLSKCYMLR 613
           E  A     L  L +S  +L   I  +      L  L LD N  I  I    L +   L 
Sbjct: 165 EPGAFDGLKLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNK-IQAIELEDLLRYSKLY 220

Query: 614 GLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSI--- 670
            L L  N +       L  LPTL+ + + NN L   +P        L+++ L  N+I   
Sbjct: 221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKV 279

Query: 671 ----FGTLPSCFSPASIEQVHLSKNKIEGRL--ESIIHDNPHLVTLDLSYN 715
               F  +      A    + L  N +       +        + +     
Sbjct: 280 GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 94.7 bits (236), Expect = 5e-21
 Identities = 60/363 (16%), Positives = 107/363 (29%), Gaps = 94/363 (25%)

Query: 242 PSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASS 301
           P    L L N+ +    +       L HL  L + +N +        + +  LQ LY S 
Sbjct: 54  PDTTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111

Query: 302 NQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSL 361
           N L   I P L     L +L I +N +R       + L ++  +++  N L  +      
Sbjct: 112 NHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168

Query: 362 MHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSIS 421
                +  L +S      IP  L        L                            
Sbjct: 169 FDGLKLNYLRISEAKLTGIPKDL-----PETLNE-------------------------- 197

Query: 422 LSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFR 481
                        L+         L H  +        L   + L  L L +N       
Sbjct: 198 -------------LH---------LDHNKIQ-AIELEDLLRYSKLYRLGLGHN------- 227

Query: 482 MPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLER 541
                  ++  ++  N              LP L EL+L  N  +  +P+   D+K+L+ 
Sbjct: 228 -------QIRMIE--NGSLSF---------LPTLRELHLDNNKLS-RVPAGLPDLKLLQV 268

Query: 542 LDISNNQLTGEIPE------RMATGCFSLEILALSNNRLQGHIFSEK--FNLTNLMTLQL 593
           + +  N +T ++                   ++L NN +            +T+ + +Q 
Sbjct: 269 VYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

Query: 594 DGN 596
              
Sbjct: 328 GNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.8 bits (226), Expect = 9e-20
 Identities = 64/394 (16%), Positives = 128/394 (32%), Gaps = 91/394 (23%)

Query: 3   ASLFTPFQQLESLDLSWNNI--AGCVQNESLERLSRL----------TNLKFLYLNDNHF 50
           A   +    L+SL  +++ +   GC  +  + + S L           +   L L +N  
Sbjct: 7   AETTSGIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDI 66

Query: 51  NNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRG 110
           +                          +       L +L  L +  N I   +  K F  
Sbjct: 67  S-------------------------ELRKDDFKGLQHLYALVLVNNKISK-IHEKAFSP 100

Query: 111 LRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEEL 170
           LRKL  LY+  + +  I             SL  L +   + +  V         N+  +
Sbjct: 101 LRKLQKLYISKNHLVEIPP-------NLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCI 152

Query: 171 ILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVN 230
            +  + L  S       +F  L                        L YL +       +
Sbjct: 153 EMGGNPLENSGF--EPGAFDGL-----------------------KLNYLRI-------S 180

Query: 231 TNFLQIVGESMP-SLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLA 289
              L  + + +P +LN L L ++ +    I  + L +   L  L +  N +R      L+
Sbjct: 181 EAKLTGIPKDLPETLNELHLDHNKI--QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238

Query: 290 NMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLP-------LCLANLTSL 342
            + +L+ L+  +N+L+  +  GL +L LL+ +Y+  N++   +                 
Sbjct: 239 FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYY 296

Query: 343 RVLDVSYNQLT-ENISSSSLMHLTSIEELILSNN 375
             + +  N +    +  ++   +T    +   N 
Sbjct: 297 NGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.8 bits (226), Expect = 9e-20
 Identities = 53/321 (16%), Positives = 94/321 (29%), Gaps = 60/321 (18%)

Query: 269 HLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPG-LCELVLLRKLYIDNND 327
               L +++ND+ +        +  L  L   +N+++  I       L  L+KLYI  N 
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNH 113

Query: 328 LRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPL 387
           L   +P  L   +SL  L +  N++ + +       L ++  + +  N            
Sbjct: 114 LV-EIPPNL--PSSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFE-PGA 168

Query: 388 FNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLS 447
           F+  KL                      +LT I                         L+
Sbjct: 169 FDGLKLNYLRISEA--------------KLTGIP------KDLPE------------TLN 196

Query: 448 HLNLSG----EFPNWLLENNTNLETLLLANNSL----FGSFRMPIHSHQKLATLDVFNNF 499
            L+L            L   + L  L L +N +     GS          L  L + NN 
Sbjct: 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS----FLPTLRELHLDNNK 252

Query: 500 FQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKM------LERLDISNNQLT-GE 552
               +P  +   L  L  + L  N       + F  +           + + NN +   E
Sbjct: 253 LS-RVPAGLPD-LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310

Query: 553 IPERMATGCFSLEILALSNNR 573
           +             +   N +
Sbjct: 311 VQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 67.3 bits (165), Expect = 6e-12
 Identities = 33/195 (16%), Positives = 59/195 (30%), Gaps = 49/195 (25%)

Query: 3   ASLFTPFQQLESLDLSWNNI------AGCVQNESLERLS----RLT--------NLKFLY 44
             +F+  + +  +++  N +       G      L  L     +LT         L  L+
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELH 199

Query: 45  LNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVV 104
           L+ N         L   S L  L L  N++   I+   L+ L  L EL +  N +    V
Sbjct: 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLSR--V 256

Query: 105 PKDFRGLRKLNTLYLGGSGIPRIDGS-----------KVLQSIG---------------- 137
           P     L+ L  +YL  + I ++  +                I                 
Sbjct: 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316

Query: 138 -SLPSLKTLYLSHTK 151
             +     +   + K
Sbjct: 317 RCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.5 bits (155), Expect = 8e-11
 Identities = 56/274 (20%), Positives = 92/274 (33%), Gaps = 50/274 (18%)

Query: 659 SLKILDLSNNSIFGTLPSCFSPA-SIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSL 717
              +LDL NN I       F     +  + L  NKI    E        L  L +S N L
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114

Query: 718 HGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ-LKEVRLIDLSHNNL-SGRIPP-CLV 774
              IP  +     L  L +  N I+ ++P  +   L+ +  I++  N L +    P    
Sbjct: 115 V-EIPPNL--PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 775 NTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRIL 834
              LN     E   T I                                         + 
Sbjct: 171 GLKLNYLRISEAKLTGI--------------------------------------PKDLP 192

Query: 835 TSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
            +++ + L  NK+   I  +     ++++ L L HN +      + S L  +  L L  N
Sbjct: 193 ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251

Query: 894 LLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA 927
            L  ++P  L  L  L+V  +  NN++ K+    
Sbjct: 252 KLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVND 283

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 833 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 892
           I    + +DL  N ++         L  ++AL L +N ++      FS L++++ L +S 
Sbjct: 52  ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111

Query: 893 NLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRA 927
           N L  +IPP L   ++L   ++  N +  K+P   
Sbjct: 112 NHLV-EIPPNL--PSSLVELRIHDNRIR-KVPKGV 142

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 96.7 bits (241), Expect = 7e-22
 Identities = 61/333 (18%), Positives = 128/333 (38%), Gaps = 58/333 (17%)

Query: 21  NIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDI 80
           +I        +     L N   +    ++  +    +   L  +  LS     +     I
Sbjct: 2   SITQPTAINVIFPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT---TI 56

Query: 81  KGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLP 140
           +G+  L+NL  L++  N I +L      + L K+  L L G+ +      K + +I  L 
Sbjct: 57  EGVQYLNNLIGLELKDNQITDL---APLKNLTKITELELSGNPL------KNVSAIAGLQ 107

Query: 141 SLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDC 200
           S+KTL L+ T+         L   +NL+ L LD + +     +  +A  T+L++LS+ + 
Sbjct: 108 SIKTLDLTSTQITDV---TPLAGLSNLQVLYLDLNQITN---ISPLAGLTNLQYLSIGNA 161

Query: 201 VLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTIL 260
                       +  +L  L                   ++  L  L   +   NK + +
Sbjct: 162 ------------QVSDLTPL------------------ANLSKLTTLKADD---NKISDI 188

Query: 261 DQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRK 320
              L  L +L  +++++N + D  P  LAN ++L ++  ++  +T    P      L+  
Sbjct: 189 S-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ--PVFYNNNLVVP 243

Query: 321 LYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLT 353
             +         P  +++  +    ++++N  +
Sbjct: 244 NVVKGPSGAPIAPATISDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 90.9 bits (226), Expect = 7e-20
 Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 32/249 (12%)

Query: 6   FTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLR 65
                 + +L      +       ++E +  L NL  L L DN   +   + L  L+ + 
Sbjct: 37  QADLDGITTLSAFGTGV------TTIEGVQYLNNLIGLELKDNQITD--LAPLKNLTKIT 88

Query: 66  HLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIP 125
            L L+ N L    ++  +  L +++ LD+T   I ++       GL  L  LYL  + I 
Sbjct: 89  ELELSGNPLK---NVSAIAGLQSIKTLDLTSTQITDV---TPLAGLSNLQVLYLDLNQI- 141

Query: 126 RIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQS 185
                  +  +  L +L+ L + + +         L N + L  L  D++ +     +  
Sbjct: 142 -----TNISPLAGLTNLQYLSIGNAQVSDL---TPLANLSKLTTLKADDNKI---SDISP 190

Query: 186 IASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLN 245
           +AS  +L  + +++  +             NL  + +    +   TN       ++   N
Sbjct: 191 LASLPNLIEVHLKNNQISDV---SPLANTSNLFIVTLTNQTI---TNQPVFYNNNLVVPN 244

Query: 246 FLSLTNSSL 254
            +   + + 
Sbjct: 245 VVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 87.1 bits (216), Expect = 1e-18
 Identities = 57/308 (18%), Positives = 115/308 (37%), Gaps = 50/308 (16%)

Query: 245 NFLSLTNSSLNKHTILD-QGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQ 303
              +    +  K  + D      L  +  L      +       +  + +L  L    NQ
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQ 74

Query: 304 LTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMH 363
           +T +++P L  L  + +L +  N L+    +  A L S++ LD++  Q+T+    + L  
Sbjct: 75  IT-DLAP-LKNLTKITELELSGNPLKNVSAI--AGLQSIKTLDLTSTQITD---VTPLAG 127

Query: 364 LTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLS 423
           L++++ L L  N   QI  ++ PL  L+ LQ  +                  Q++ ++  
Sbjct: 128 LSNLQVLYLDLN---QI-TNISPLAGLTNLQYLSIGNA--------------QVSDLT-- 167

Query: 424 GYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMP 483
                      L +   L ++      +S   P   L +  NL  + L NN +  S   P
Sbjct: 168 ----------PLANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQI--SDVSP 212

Query: 484 IHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSI-PSSFADMKMLERL 542
           + +   L  + + N      I  +   Y   L+  N+ +      I P++ +D       
Sbjct: 213 LANTSNLFIVTLTNQ----TITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASP 268

Query: 543 DISNNQLT 550
           +++ N  +
Sbjct: 269 NLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.7 bits (197), Expect = 3e-16
 Identities = 63/326 (19%), Positives = 116/326 (35%), Gaps = 71/326 (21%)

Query: 263 GLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLY 322
               L +   +    +++ D +    A++  +  L A    +T  I  G+  L  L  L 
Sbjct: 14  PDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLE 69

Query: 323 IDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPI 382
           + +N +    PL   NLT +  L++S N L    + S++  L SI+ L L++        
Sbjct: 70  LKDNQITDLAPL--KNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQI----T 120

Query: 383 SLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLN 442
            + PL  LS LQ    ++N              Q+T+IS             L    +L 
Sbjct: 121 DVTPLAGLSNLQVLYLDLN--------------QITNIS------------PLAGLTNLQ 154

Query: 443 SVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQG 502
            +++ +  +S   P   L N + L TL   +N              K++ +    +    
Sbjct: 155 YLSIGNAQVSDLTP---LANLSKLTTLKADDN--------------KISDISPLAS---- 193

Query: 503 HIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCF 562
                    LP L+E++L  N    S  S  A+   L  + ++N  +T +          
Sbjct: 194 ---------LPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVV 242

Query: 563 SLEILALSNNRLQGHIFSEKFNLTNL 588
              +   S   +     S+     + 
Sbjct: 243 PNVVKGPSGAPIAPATISDNGTYASP 268

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 77.0 bits (190), Expect = 3e-15
 Identities = 44/265 (16%), Positives = 92/265 (34%), Gaps = 31/265 (11%)

Query: 512 LPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSN 571
           L   +++   ++        + AD+  +  L      +T  I         +L  L L +
Sbjct: 18  LANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKD 72

Query: 572 NRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLG 631
           N++     +   NLT +  L+L GN  +  +  +++    ++ L L+   +    P  L 
Sbjct: 73  NQITD--LAPLKNLTKITELELSGNP-LKNV-SAIAGLQSIKTLDLTSTQITDVTP--LA 126

Query: 632 NLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSI-----FGTLPSCFSPASIEQV 686
            L  LQ + +  N +    P+      +L+ L + N  +        L        +  +
Sbjct: 127 GLSNLQVLYLDLNQITNISPLAGLT--NLQYLSIGNAQVSDLTPLANLSK------LTTL 178

Query: 687 HLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIP 746
               NKI     S +   P+L+ + L  N +    P  +     L  + L +  I  +  
Sbjct: 179 KADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV 234

Query: 747 VQLCQLKEVRLIDLSHNNLSGRIPP 771
                   + + ++        I P
Sbjct: 235 F---YNNNLVVPNVVKGPSGAPIAP 256

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 44/218 (20%), Positives = 85/218 (38%), Gaps = 16/218 (7%)

Query: 563 SLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHL 622
           +   +A   + +       + +L  + TL   G   +  I E +     L GL L DN +
Sbjct: 20  NAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTG-VTTI-EGVQYLNNLIGLELKDNQI 75

Query: 623 FGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPAS 682
              +   L NL  +  + +  N L+    I   Q  S+K LDL++  I   +      ++
Sbjct: 76  -TDLAP-LKNLTKITELELSGNPLKNVSAIAGLQ--SIKTLDLTSTQI-TDVTPLAGLSN 130

Query: 683 IEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIK 742
           ++ ++L  N+I   +  +     +L  L +    +   +   +  L +L  L    N I 
Sbjct: 131 LQVLYLDLNQIT-NISPLAG-LTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKIS 186

Query: 743 GEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNE 780
              P  L  L  +  + L +N +S  + P    ++L  
Sbjct: 187 DISP--LASLPNLIEVHLKNNQISD-VSPLANTSNLFI 221

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 66.3 bits (162), Expect = 8e-12
 Identities = 54/345 (15%), Positives = 101/345 (29%), Gaps = 98/345 (28%)

Query: 335 CLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQ 394
               L +   +    + +T    + +   L  I  L            ++E +  L+ L 
Sbjct: 14  PDPALANAIKIAAGKSNVT---DTVTQADLDGITTLSAFGTGV----TTIEGVQYLNNLI 66

Query: 395 TFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGE 454
               + N              Q+T ++                        L +L     
Sbjct: 67  GLELKDN--------------QITDLA-----------------------PLKNL----- 84

Query: 455 FPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPG 514
                    T +  L L+ N               L  +                  L  
Sbjct: 85  ---------TKITELELSGN--------------PLKNVSAIAG-------------LQS 108

Query: 515 LMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRL 574
           +  L+L+        P   A +  L+ L +  NQ+T  I      G  +L+ L++ N ++
Sbjct: 109 IKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NISP--LAGLTNLQYLSIGNAQV 163

Query: 575 QGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLP 634
                +   NL+ L TL+ D N  I +I   L+    L  ++L +N +    P  L N  
Sbjct: 164 SD--LTPLANLSKLTTLKADDNK-ISDIS-PLASLPNLIEVHLKNNQISDVSP--LANTS 217

Query: 635 TLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFS 679
            L  + + N  +           + +    +   S     P+  S
Sbjct: 218 NLFIVTLTNQTITNQPVFY--NNNLVVPNVVKGPSGAPIAPATIS 260

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 48/313 (15%), Positives = 103/313 (32%), Gaps = 55/313 (17%)

Query: 584 NLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPN 643
            L N + +    +N       + +    +  L      +   I   +  L  L  + + +
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGV-TTIEG-VQYLNNLIGLELKD 72

Query: 644 NNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHD 703
           N +    P++      +  L+LS N +   + +     SI+ + L+  +I     + +  
Sbjct: 73  NQITDLAPLKNLT--KITELELSGNPL-KNVSAIAGLQSIKTLDLTSTQITD--VTPLAG 127

Query: 704 NPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHN 763
             +L  L L  N +  +I   +  L  L YL + +  +    P  L  L ++  +    N
Sbjct: 128 LSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN 183

Query: 764 NLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTK 823
            +S  I P     +L E +      + +                   P+           
Sbjct: 184 KISD-ISPLASLPNLIEVHLKNNQISDV------------------SPLAN--------- 215

Query: 824 NMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTI-PTTFSNL 882
                      +++  + L+   +T +    + Y   +   N+        I P T S+ 
Sbjct: 216 ----------TSNLFIVTLTNQTITNQ---PVFYNNNLVVPNVVKGPSGAPIAPATISDN 262

Query: 883 KQIESLDLSYNLL 895
               S +L++NL 
Sbjct: 263 GTYASPNLTWNLT 275

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 96.5 bits (240), Expect = 9e-22
 Identities = 54/278 (19%), Positives = 88/278 (31%), Gaps = 20/278 (7%)

Query: 459 LLENNTNLETLLLANNSLFGSFRMPIHSHQ-KLATLDVFNNFFQGHIPVEIGTYL--PGL 515
           L     +LE LL   ++     +         L  L V        I       L   GL
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 516 MELNLSRNAFNGSIPSSFADMKM--LERLDISNNQLTGEIPERMATGCF---SLEILALS 570
            EL L      G+ P    +     L  L++ N               +    L++L+++
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 571 NNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYM----LRGLYLSDNH---LF 623
                     +      L TL L  N  +GE     + C +    L+ L L +       
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217

Query: 624 GKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQR-DSLKILDLSNNSIFGTLPSCFSPAS 682
           G           LQ + + +N+L        C     L  L+LS   +   +P    PA 
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPKG-LPAK 275

Query: 683 IEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGS 720
           +  + LS N+++        + P +  L L  N    S
Sbjct: 276 LSVLDLSYNRLDR--NPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.5 bits (201), Expect = 8e-17
 Identities = 59/278 (21%), Positives = 89/278 (32%), Gaps = 22/278 (7%)

Query: 357 SSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQ 416
              SL +L    +       F  I  SL    +L +L      I ++       +     
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSL----SLKRLTVRAARIPSRILFGALRVLGISG 96

Query: 417 LTSISLSG-YVDGGTFPEFLYHQH-DLNSVNLSHLNLSGEFPNWLLE----NNTNLETLL 470
           L  ++L    V G   P  L     DLN +NL +++ +     WL E        L+ L 
Sbjct: 97  LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLS 155

Query: 471 LANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVE---IGTYLPGLMELNLSRNAFN- 526
           +A           +     L+TLD+ +N   G   +         P L  L L       
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 527 --GSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFN 584
             G   +  A    L+ LD+S+N L              L  L LS   L+  +      
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP- 273

Query: 585 LTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHL 622
              L  L L  N  +   P S  +   +  L L  N  
Sbjct: 274 -AKLSVLDLSYNR-LDRNP-SPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.4 bits (193), Expect = 1e-15
 Identities = 53/239 (22%), Positives = 84/239 (35%), Gaps = 14/239 (5%)

Query: 166 NLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQ--DFLKFKNLEYLDMG 223
           +LE L+              I    SLK L+++   +   +       L    L+ L + 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 224 WVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLV--HLQGLYIRDNDLR 281
            ++V        ++  + P LN L+L N S          L Q +   L+ L I      
Sbjct: 104 NLEVTGTA-PPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 282 DGLPWCLANMTSLQVLYASSNQLTGNIS--PGLCELVL--LRKLYIDNNDLR---GSLPL 334
           +     +    +L  L  S N   G       LC L    L+ L + N  +    G    
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222

Query: 335 CLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKL 393
             A    L+ LD+S+N L +   + S    + +  L LS     Q+P  L     LS L
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA--KLSVL 279

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.9 bits (189), Expect = 3e-15
 Identities = 53/291 (18%), Positives = 91/291 (31%), Gaps = 38/291 (13%)

Query: 504 IPVEIGTYLPGLMELNLSRNAF-NGSIPSSFADMKMLERLDISNNQLTGEIPERM--ATG 560
             VE+      L  L    +   +    +       L+RL +   ++   I        G
Sbjct: 34  ADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLG 93

Query: 561 CFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLD-GNNFIGEIPESLSKCYM-----LRG 614
              L+ L L N  + G         T      L+  N         L++        L+ 
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 615 LYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIE----FCQRDSLKILDLSNNSI 670
           L ++  H        +   P L  + + +N   G   +       +  +L++L L N  +
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 671 FGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRI-DRLP 729
                                   G   ++      L  LDLS+NSL  +      D   
Sbjct: 214 --------------------ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253

Query: 730 QLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNE 780
           QLN L L+   +K    V      ++ ++DLS+N L  R P       +  
Sbjct: 254 QLNSLNLSFTGLKQ---VPKGLPAKLSVLDLSYNRLD-RNPSPDELPQVGN 300

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.5 bits (183), Expect = 2e-14
 Identities = 58/287 (20%), Positives = 95/287 (33%), Gaps = 16/287 (5%)

Query: 76  GSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQS 135
           G+ D++      +LE L    +   +L    D      L  L +  + IP       L+ 
Sbjct: 32  GAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRV 91

Query: 136 IGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASF-----T 190
           +  +  L+ L L + +  GT     L   T  +  IL+  ++  +     +A        
Sbjct: 92  L-GISGLQELTLENLEVTGTAPPPLL-EATGPDLNILNLRNVSWATRDAWLAELQQWLKP 149

Query: 191 SLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFL-QIVGESMPSLNFLSL 249
            LK LS+           +    F  L  LD+           +  +     P+L  L+L
Sbjct: 150 GLKVLSIAQAHS-LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 250 TNSSLNK-HTILDQGLCQLVHLQGLYIRDNDLRDGLP-WCLANMTSLQVLYASSNQLTGN 307
            N+ +     +        V LQGL +  N LRD          + L  L  S   L   
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ- 267

Query: 308 ISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTE 354
           +  GL     L  L +  N L    P     L  +  L +  N   +
Sbjct: 268 VPKGL--PAKLSVLDLSYNRLD-RNPSPD-ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.5 bits (162), Expect = 8e-12
 Identities = 59/323 (18%), Positives = 98/323 (30%), Gaps = 57/323 (17%)

Query: 11  QLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLA 70
            LE L    +  A   Q   + +   L  L                 + G+S L+ L+L 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 71  DNRLNGSIDIKGLN-SLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDG 129
           +  + G+     L  +  +L  L+     + N+        L +L               
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILN-----LRNVSWATRDAWLAELQQW------------ 146

Query: 130 SKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASF 189
                     P LK L ++          +++  F  L  L     DL  +  L      
Sbjct: 147 --------LKPGLKVLSIAQAHS-LNFSCEQVRVFPALSTL-----DLSDNPELGERGLI 192

Query: 190 TSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSL 249
           ++L                   LKF  L+ L +    ++  +     +  +   L  L L
Sbjct: 193 SAL-----------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235

Query: 250 TNSSLNKHTILDQGLCQ-LVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNI 308
           +++SL          C     L  L +    L   +P  L     L VL  S N+L  N 
Sbjct: 236 SHNSL--RDAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGLP--AKLSVLDLSYNRLDRN- 289

Query: 309 SPGLCELVLLRKLYIDNNDLRGS 331
            P   EL  +  L +  N    S
Sbjct: 290 -PSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.5 bits (162), Expect = 8e-12
 Identities = 33/158 (20%), Positives = 54/158 (34%), Gaps = 15/158 (9%)

Query: 1   MNASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFN---NSIFSS 57
            +      F  L +LDLS N   G     S     +   L+ L L +           + 
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 58  LGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGL-RKLNT 116
                 L+ L L+ N L  +      +  S L  L+++   ++ +      +GL  KL+ 
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-----PKGLPAKLSV 278

Query: 117 LYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKG 154
           L L  + + R        S   LP +  L L    F  
Sbjct: 279 LDLSYNRLDRNP------SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.5 bits (149), Expect = 4e-10
 Identities = 44/251 (17%), Positives = 76/251 (30%), Gaps = 38/251 (15%)

Query: 545 SNNQLTGEIPERMATGCFSLEI-LALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIP 603
           S     G     +  G  SLE  L   +       F++     +L  L +        I 
Sbjct: 26  SAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRIL 85

Query: 604 ESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRD--SLK 661
               +                     +  +  LQ + + N  + G  P    +     L 
Sbjct: 86  FGALR---------------------VLGISGLQELTLENLEVTGTAPPPLLEATGPDLN 124

Query: 662 ILDLSNNSIFGTLP-----SCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNS 716
           IL+L N S             +    ++ + +++          +   P L TLDLS N 
Sbjct: 125 ILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184

Query: 717 LHGSIPNRI----DRLPQLNYLLLAHNYIK---GEIPVQLCQLKEVRLIDLSHNNLSGRI 769
             G           + P L  L L +  ++   G          +++ +DLSHN+L    
Sbjct: 185 ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244

Query: 770 PP--CLVNTSL 778
               C   + L
Sbjct: 245 GAPSCDWPSQL 255

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 38/200 (19%), Positives = 61/200 (30%), Gaps = 15/200 (7%)

Query: 5   LFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSL 64
           L      L  L+L   + A      +  +      LK L +   H  N     +    +L
Sbjct: 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175

Query: 65  RHLSLADNRLNGSIDIKG---LNSLSNLEELDMTGNAIENL--VVPKDFRGLRKLNTLYL 119
             L L+DN   G   +           L+ L +    +E    V         +L  L L
Sbjct: 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235

Query: 120 GGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHV 179
             + +    G+           L +L LS T      V + L     L  L L  + L  
Sbjct: 236 SHNSLRDAAGAPSCD---WPSQLNSLNLSFTGL--KQVPKGL--PAKLSVLDLSYNRL-- 286

Query: 180 SQLLQSIASFTSLKHLSMQD 199
                S      + +LS++ 
Sbjct: 287 -DRNPSPDELPQVGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 37/222 (16%), Positives = 64/222 (28%), Gaps = 39/222 (17%)

Query: 710 LDLSYNSLHGSIPNRIDRL---PQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 766
           L +    +   I     R+     L  L L +  + G  P  L +     L  L+  N+S
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 767 GRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMS 826
                  +                             L     P + K  ++        
Sbjct: 133 WATRDAWLAE---------------------------LQQWLKPGL-KVLSIAQAHSLNF 164

Query: 827 YYYQGRILTSMSGIDLSCNKLTGEIP----TQIGYLTRIHALNLSHNNLT---GTIPTTF 879
              Q R+  ++S +DLS N   GE              +  L L +  +    G      
Sbjct: 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224

Query: 880 SNLKQIESLDLSYNLLHGKIPPQLIV-LNTLEVFKVAYNNLS 920
           +   Q++ LDLS+N L            + L    +++  L 
Sbjct: 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.9 bits (106), Expect = 7e-05
 Identities = 41/299 (13%), Positives = 79/299 (26%), Gaps = 57/299 (19%)

Query: 629 WLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSI----FGTLPSCFSPASIE 684
           + G       +   +   +     +  +  SLK L +    I              + ++
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 685 QVHLSKNKIEGR--LESIIHDNPHLVTLDLSYNSLHGSIPNRID----RLPQLNYLLLAH 738
           ++ L   ++ G      +    P L  L+L   S         +      P L  L +A 
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158

Query: 739 NYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASV 798
            +       Q+     +  +DLS N   G                              +
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERG---------------------------L 191

Query: 799 YRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQI-GY 857
             + C     +  +         T +            + G+DLS N L          +
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 858 LTRIHALNLSHNNLTGTIPTTFSNLK-------------------QIESLDLSYNLLHG 897
            +++++LNLS   L        + L                    Q+ +L L  N    
Sbjct: 252 PSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.9 bits (106), Expect = 9e-05
 Identities = 43/280 (15%), Positives = 84/280 (30%), Gaps = 39/280 (13%)

Query: 615 LYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIP---IEFCQRDSLKILDLSNNSIF 671
           L   D          +    +L+ + +    +   I    +       L+ L L N  + 
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 672 GTLPS---CFSPASIEQVHLSKNKIEGRLESI----IHDNPHLVTLDLSYNSLHGSIPNR 724
           GT P      +   +  ++L       R   +        P L  L ++          +
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168

Query: 725 IDRLPQLNYLLLAHNYIKGEI-------PVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTS 777
           +   P L+ L L+ N   GE        P++   L+ + L +      SG          
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228

Query: 778 LNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSY----YYQGRI 833
             +                 +  S      ++     +   Q  + N+S+         +
Sbjct: 229 QLQ----------------GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL 272

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTG 873
              +S +DLS N+L    P+    L ++  L+L  N    
Sbjct: 273 PAKLSVLDLSYNRLD-RNPSPDE-LPQVGNLSLKGNPFLD 310

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 98.5 bits (246), Expect = 1e-21
 Identities = 87/426 (20%), Positives = 151/426 (35%), Gaps = 58/426 (13%)

Query: 3   ASLFTPFQQLESLDLSWNNI--AGCVQNESL-ERLSRLTNLKFLYLNDNHFNNSIFSSLG 59
           A L    QQ + + L    +  A C   + +   L     L  L L  N   +     + 
Sbjct: 21  AELLPLLQQCQVVRLDDCGLTEARC---KDISSALRVNPALAELNLRSNELGDVGVHCVL 77

Query: 60  -GLSS----LRHLSLADNRLN--GSIDI-KGLNSLSNLEELDMTGNAIENLVVPKDFRGL 111
            GL +    ++ LSL +  L   G   +   L +L  L+EL ++ N + +  +     GL
Sbjct: 78  QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL 137

Query: 112 R----KLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQ----KLHN 163
                +L  L L    +       +   + + P  K L +S+       V         +
Sbjct: 138 LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDS 197

Query: 164 FTNLEELILDE---SDLHVSQLLQSIASFTSLKHLSMQDCVL--KGALHGQDFLKFKN-- 216
              LE L L+    +  +   L   +AS  SL+ L++    L   G       L   +  
Sbjct: 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR 257

Query: 217 LEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLV-------- 268
           L  L +    +         +   + +    SL   SL  + + D+G   L         
Sbjct: 258 LRTLWIWECGITAKG--CGDLCRVLRAKE--SLKELSLAGNELGDEGARLLCETLLEPGC 313

Query: 269 HLQGLYIRDNDLRD----GLPWCLANMTSLQVLYASSNQLTGNISPGLCELVL-----LR 319
            L+ L+++               LA    L  L  S+N+L       LC+ +      LR
Sbjct: 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 373

Query: 320 KLYIDNNDLR----GSLPLCLANLTSLRVLDVSYNQLTE----NISSSSLMHLTSIEELI 371
            L++ + D+      SL   L    SLR LD+S N L +     +  S       +E+L+
Sbjct: 374 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 433

Query: 372 LSNNHF 377
           L + ++
Sbjct: 434 LYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 92.3 bits (230), Expect = 1e-19
 Identities = 83/390 (21%), Positives = 135/390 (34%), Gaps = 68/390 (17%)

Query: 5   LFTPFQQLESLDLSWNNI--AGCVQNESL-ERLSRLTNLKFLYLNDNHFNNSIFSSLGGL 61
           L TP  +++ L L    +  AGC     L   L  L  L+ L+L+DN   ++    L   
Sbjct: 80  LQTPSCKIQKLSLQNCCLTGAGC---GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG 136

Query: 62  -----SSLRHLSLADNRL--NGSIDI-KGLNSLSNLEELDMTGNAIENLVVPKDFRGLR- 112
                  L  L L    L       +   L +  + +EL ++ N I    V    +GL+ 
Sbjct: 137 LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKD 196

Query: 113 ---KLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQ----KLHNFT 165
              +L  L L   G+   +   +   + S  SL+ L L   K     + +     LH  +
Sbjct: 197 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS 256

Query: 166 NLEELILDE---SDLHVSQLLQSIASFTSLKHLSMQDCVL--KGALHGQDFLKFKN--LE 218
            L  L + E   +      L + + +  SLK LS+    L  +GA    + L      LE
Sbjct: 257 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 316

Query: 219 YLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDN 278
            L +                           T +     +     L Q   L  L I +N
Sbjct: 317 SLWVKSCS----------------------FTAACC---SHFSSVLAQNRFLLELQISNN 351

Query: 279 DLRDGLPWCLA-----NMTSLQVLYASSNQLT----GNISPGLCELVLLRKLYIDNNDL- 328
            L D     L        + L+VL+ +   ++     +++  L     LR+L + NN L 
Sbjct: 352 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

Query: 329 -RGSLPLCLA---NLTSLRVLDVSYNQLTE 354
             G L L  +       L  L +     +E
Sbjct: 412 DAGILQLVESVRQPGCLLEQLVLYDIYWSE 441

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 80.0 bits (198), Expect = 9e-16
 Identities = 90/527 (17%), Positives = 158/527 (29%), Gaps = 109/527 (20%)

Query: 87  SNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLY 146
            +++ LD+    + +    +    L++   + L   G+       +  ++   P+L  L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 147 LSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVL--KG 204
           L   +                   + D     V Q LQ+      ++ LS+Q+C L   G
Sbjct: 63  LRSNE-------------------LGDVGVHCVLQGLQT--PSCKIQKLSLQNCCLTGAG 101

Query: 205 ALH-GQDFLKFKNLEYLDMGWVQVDVN--TNFLQIVGESMPSLNFLSLTNSSLNKH--TI 259
                        L+ L +    +         + + +    L  L L   SL+      
Sbjct: 102 CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161

Query: 260 LDQGLCQLVHLQGLYIRDNDLRDGLPWCLA-----NMTSLQVLYASSNQLT----GNISP 310
           L   L      + L + +ND+ +     L      +   L+ L   S  +T     ++  
Sbjct: 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221

Query: 311 GLCELVLLRKLYIDNNDL--RGSLPLCLANL---TSLRVLDVSYNQLTEN---ISSSSLM 362
            +     LR+L + +N L   G   LC   L   + LR L +    +T          L 
Sbjct: 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281

Query: 363 HLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISL 422
              S++EL L+ N      +  E    L +                  L P  QL S+ +
Sbjct: 282 AKESLKELSLAGNE-----LGDEGARLLCETL----------------LEPGCQLESLWV 320

Query: 423 SGYVDGGTFPEFLYHQHDLNSVNLSHLNLSG---------EFPNWLLENNTNLETLLLAN 473
                              N   L  L +S          E    L +  + L  L LA+
Sbjct: 321 KSCSFTAACCSHFSSVLAQNR-FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379

Query: 474 NSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSF 533
             +         S   LA   + N                 L EL+LS N    +     
Sbjct: 380 CDVSD------SSCSSLAATLLAN---------------HSLRELDLSNNCLGDAGILQL 418

Query: 534 ADMKM-----LERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQ 575
            +        LE+L + +   + E           L+ L      L+
Sbjct: 419 VESVRQPGCLLEQLVLYDIYWSEE-------MEDRLQALEKDKPSLR 458

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 78.9 bits (195), Expect = 2e-15
 Identities = 61/383 (15%), Positives = 129/383 (33%), Gaps = 59/383 (15%)

Query: 440 DLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSL-------FGSFRMPIHSHQKLAT 492
           D+ S+++    LS      LL      + + L +  L         S    +  +  LA 
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA---LRVNPALAE 60

Query: 493 LDVFNNFFQGHIPVEIGTYL----PGLMELNLSRNAFN----GSIPSSFADMKMLERLDI 544
           L++ +N         +   L      + +L+L          G + S+   +  L+ L +
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 545 SNNQLTGE----IPERMATGCFSLEILALSNNRLQ----GHIFSEKFNLTNLMTLQLDGN 596
           S+N L       + E +      LE L L    L       + S      +   L +  N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 597 NFIGE----IPESLSKC-YMLRGLYLSDNHL----FGKIPRWLGNLPTLQYIIMPNNNLE 647
           +        + + L      L  L L    +       +   + +  +L+ + + +N L 
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 648 GPIPIEFCQ-----RDSLKILDLSNNSIFGTLPSCFSPA-----SIEQVHLSKNKIEGR- 696
                E C         L+ L +    I                S++++ L+ N++    
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300

Query: 697 ----LESIIHDNPHLVTLDLSYNSLHG----SIPNRIDRLPQLNYLLLAHNYIKGEIPVQ 748
                E+++     L +L +   S          + + +   L  L +++N ++     +
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360

Query: 749 LCQ-LKEV----RLIDLSHNNLS 766
           LCQ L +     R++ L+  ++S
Sbjct: 361 LCQGLGQPGSVLRVLWLADCDVS 383

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 75.8 bits (187), Expect = 3e-14
 Identities = 75/479 (15%), Positives = 141/479 (29%), Gaps = 93/479 (19%)

Query: 340 TSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGE 399
             ++ LD+   +L++   +  L  L   + + L +          + + +  ++      
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT--EARCKDISSALRVNP---- 56

Query: 400 INAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWL 459
                            L  ++L     G      +       S  +  L+L       L
Sbjct: 57  ----------------ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN---CCL 97

Query: 460 -----------LENNTNLETLLLANNSLFGS-----FRMPIHSHQKLATLDVFNNFFQGH 503
                      L     L+ L L++N L  +         +    +L  L +        
Sbjct: 98  TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157

Query: 504 IPVEIGTYL---PGLMELNLSRNAFNGSIPSSFADM-----KMLERLDISNNQLTGEIPE 555
               + + L   P   EL +S N  N +               LE L + +  +T +   
Sbjct: 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217

Query: 556 RMATG---CFSLEILALSNNRLQG---HIFSEKFNLTN--LMTLQLDGNNF----IGEIP 603
            +        SL  LAL +N+L               +  L TL +          G++ 
Sbjct: 218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277

Query: 604 ESLSKCYMLRGLYLSDNHLFGKIPRWLGNL-----PTLQYIIMPNNNLEGPIPIEFCQR- 657
             L     L+ L L+ N L  +  R L          L+ + + + +         C   
Sbjct: 278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA----ACCSHF 333

Query: 658 -------DSLKILDLSNNSIFGTLPSCFSPA------SIEQVHLSKNKI--EG--RLESI 700
                    L  L +SNN +                  +  + L+   +       L + 
Sbjct: 334 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393

Query: 701 IHDNPHLVTLDLSYNSLHGSIPNRI-----DRLPQLNYLLLAHNYIKGEIPVQLCQLKE 754
           +  N  L  LDLS N L  +   ++          L  L+L   Y   E+  +L  L++
Sbjct: 394 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 452

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 97.0 bits (241), Expect = 7e-21
 Identities = 66/284 (23%), Positives = 103/284 (36%), Gaps = 38/284 (13%)

Query: 512 LPGLMELNLSRNAFNGSIPSSFADM----KMLERLDISN---NQLTGEIPERMATGCFSL 564
           LP     +LS+N+F  +I  ++AD        E+  +     N+    + E +       
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN---QF 61

Query: 565 EILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFG 624
             L L+   L      +      +  L++  N  +  +PE  +    L  L   DN L  
Sbjct: 62  SELQLNRLNLS--SLPDNL-PPQITVLEITQNA-LISLPELPAS---LEYLDACDNRL-S 113

Query: 625 KIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIE 684
            +P    +L  L    + NN L   +P        L+ ++  NN +   LP    P S+E
Sbjct: 114 TLPELPASLKHLD---VDNNQLTM-LPELPAL---LEYINADNNQL-TMLPE--LPTSLE 163

Query: 685 QVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQL----NYLLLAHNY 740
            + +  N++    E        L  LD+S N L  S+P    R         +     N 
Sbjct: 164 VLSVRNNQLTFLPELP----ESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENR 218

Query: 741 IKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHG 784
           I   IP  +  L     I L  N LS RI   L   +    YHG
Sbjct: 219 IT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG 261

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 88.5 bits (219), Expect = 3e-18
 Identities = 59/311 (18%), Positives = 99/311 (31%), Gaps = 56/311 (18%)

Query: 443 SVNLSHLNLSGEFPNWLLENNTNLETLLLANNSL-FGSFRMPIHSHQKLATLDVFNNFFQ 501
           S N  +  +SG + +         E   L   +       +      + + L +      
Sbjct: 14  SQNSFYNTISGTYAD-YFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS 72

Query: 502 GHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGC 561
             +P  +    P +  L +++NA   S+P   A    LE LD  +N+L+  +PE  A   
Sbjct: 73  -SLPDNLP---PQITVLEITQNAL-ISLPELPAS---LEYLDACDNRLS-TLPELPA--- 120

Query: 562 FSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNH 621
            SL+ L + NN+L   +  E      L  +  D NN +  +PE  +    L  L + +N 
Sbjct: 121 -SLKHLDVDNNQLT--MLPE--LPALLEYINAD-NNQLTMLPELPTS---LEVLSVRNNQ 171

Query: 622 LFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLK----ILDLSNNSIFGTLPSC 677
           L   +P    +L  L    +  N LE  +P    +    +          N I   +P  
Sbjct: 172 L-TFLPELPESLEALD---VSTNLLES-LPAVPVRNHHSEETEIFFRCRENRI-THIPEN 225

Query: 678 FSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLA 737
                                  I       T+ L  N L   I   + +          
Sbjct: 226 -----------------------ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGP 262

Query: 738 HNYIKGEIPVQ 748
             Y       Q
Sbjct: 263 RIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 87.7 bits (217), Expect = 6e-18
 Identities = 51/240 (21%), Positives = 86/240 (35%), Gaps = 44/240 (18%)

Query: 441 LNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSL------FGSFRMPIHSHQKLATLD 494
            + + L+ LNLS   P+ L      +  L +  N+L        S          L  LD
Sbjct: 61  FSELQLNRLNLS-SLPDNLP---PQITVLEITQNALISLPELPAS----------LEYLD 106

Query: 495 VFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIP 554
             +N     +P         L  L++  N     +P   A   +LE ++  NNQLT  +P
Sbjct: 107 ACDNRLS-TLPELPA----SLKHLDVDNNQLT-MLPELPA---LLEYINADNNQLT-MLP 156

Query: 555 ERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLR- 613
           E       SLE+L++ NN+L   +        +L  L +   N +  +P    + +    
Sbjct: 157 ELPT----SLEVLSVRNNQLT-FLPEL---PESLEALDVS-TNLLESLPAVPVRNHHSEE 207

Query: 614 ---GLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSI 670
                   +N +   IP  + +L     II+ +N L   I     Q+ +           
Sbjct: 208 TEIFFRCRENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.6 bits (201), Expect = 5e-16
 Identities = 56/329 (17%), Positives = 90/329 (27%), Gaps = 83/329 (25%)

Query: 326 NDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLE 385
           +                 +   + N+    +    +   +   EL L+  +   +P +L 
Sbjct: 23  SGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFS---ELQLNRLNLSSLPDNLP 79

Query: 386 PLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVN 445
           P   ++ L                                                    
Sbjct: 80  P--QITVL---------------------------------------------------E 86

Query: 446 LSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIP 505
           ++   L    P        +LE L   +N L  +      S   L  LDV NN     +P
Sbjct: 87  ITQNALI-SLPELP----ASLEYLDACDNRL-STLPELPAS---LKHLDVDNNQLT-MLP 136

Query: 506 VEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLE 565
                    L  +N   N     +P        LE L + NNQLT  +PE       SLE
Sbjct: 137 ELPA----LLEYINADNNQLT-MLPEL---PTSLEVLSVRNNQLT-FLPELPE----SLE 183

Query: 566 ILALSNNRLQGHIFSEKFNLTNLMTLQLD---GNNFIGEIPESLSKCYMLRGLYLSDNHL 622
            L +S N L+  + +      +    ++      N I  IPE++        + L DN L
Sbjct: 184 ALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242

Query: 623 FGKIPRWLGNLPTLQYIIMPNNNLEGPIP 651
             +I   L           P         
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRIYFSMSDG 271

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.2 bits (200), Expect = 7e-16
 Identities = 58/350 (16%), Positives = 104/350 (29%), Gaps = 97/350 (27%)

Query: 37  LTNLKFLYLNDNHFNNSIFSS----LGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEEL 92
           L       L+ N F N+I  +              +L     N ++ +     ++   EL
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSEL 64

Query: 93  DMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKF 152
            +    + +L  P +                                P +  L ++    
Sbjct: 65  QLNRLNLSSL--PDNL------------------------------PPQITVLEITQNAL 92

Query: 153 KGTVVNQKLHN-FTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDF 211
                   L     +LE L     D  +S L +      SLKHL                
Sbjct: 93  I------SLPELPASLEYLDA--CDNRLSTLPELP---ASLKHL---------------- 125

Query: 212 LKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQ 271
                           DV+ N L ++ E    L +++  N   N+ T+L +       L+
Sbjct: 126 ----------------DVDNNQLTMLPELPALLEYINADN---NQLTMLPE---LPTSLE 163

Query: 272 GLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRK----LYIDNND 327
            L +R+N L   LP       SL+ L  S+N L  ++           +         N 
Sbjct: 164 VLSVRNNQLTF-LP---ELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENR 218

Query: 328 LRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHF 377
           +   +P  + +L     + +  N L+      SL   T+  +      +F
Sbjct: 219 IT-HIPENILSLDPTCTIILEDNPLSS-RIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 74.2 bits (182), Expect = 1e-13
 Identities = 58/327 (17%), Positives = 101/327 (30%), Gaps = 75/327 (22%)

Query: 589 MTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNL-E 647
           M++ L  NN       SLS+           N + G    +       +   +P  N  E
Sbjct: 1   MSIMLPINNNF-----SLSQN-------SFYNTISGTYADYFSAWDKWEKQALPGENRNE 48

Query: 648 GPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHL 707
               ++ C  +    L L+  ++  +LP    P  I  + +++N +    E        L
Sbjct: 49  AVSLLKECLINQFSELQLNRLNL-SSLPDNL-PPQITVLEITQNALISLPELP----ASL 102

Query: 708 VTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSG 767
             LD   N L  ++P   +    L +L + +N +   +P     L+    I+  +N L+ 
Sbjct: 103 EYLDACDNRLS-TLP---ELPASLKHLDVDNNQLT-MLPELPALLEY---INADNNQLT- 153

Query: 768 RIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSY 827
            +P     TSL            +  R     +   LP                      
Sbjct: 154 MLPELP--TSL----------EVLSVRNN---QLTFLPEL-------------------- 178

Query: 828 YYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTR----IHALNLSHNNLTGTIPTTFSNLK 883
                   S+  +D+S N L   +P                    N +T  IP    +L 
Sbjct: 179 ------PESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLD 230

Query: 884 QIESLDLSYNLLHGKIPPQLIVLNTLE 910
              ++ L  N L  +I   L       
Sbjct: 231 PTCTIILEDNPLSSRIRESLSQQTAQP 257

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 72.7 bits (178), Expect = 3e-13
 Identities = 53/345 (15%), Positives = 93/345 (26%), Gaps = 86/345 (24%)

Query: 562 FSLEILALSNN--RLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSD 619
           FSL   +  N         FS             + N  +  + E L        L L+ 
Sbjct: 11  FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ--FSELQLNR 68

Query: 620 NHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFS 679
            +L   +P  L                             + +L+++ N++  +LP    
Sbjct: 69  LNL-SSLPDNLPP--------------------------QITVLEITQNAL-ISLPE--L 98

Query: 680 PASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHN 739
           PAS+E +    N++    E        L  LD+  N L   +P        L Y+   +N
Sbjct: 99  PASLEYLDACDNRLSTLPELP----ASLKHLDVDNNQLT-MLPELP---ALLEYINADNN 150

Query: 740 YIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVN-TSLNEGY-HGEVAPTSIWCRRAS 797
            +   +P     L+    + + +N L+  +P    +  +L+      E  P         
Sbjct: 151 QLT-MLPELPTSLEV---LSVRNNQLT-FLPELPESLEALDVSTNLLESLPAVPVRNH-- 203

Query: 798 VYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGY 857
                                                 +        N++T  IP  I  
Sbjct: 204 ----------------------------------HSEETEIFFRCRENRIT-HIPENILS 228

Query: 858 LTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQ 902
           L     + L  N L+  I  + S                     Q
Sbjct: 229 LDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 72.3 bits (177), Expect = 4e-13
 Identities = 64/405 (15%), Positives = 124/405 (30%), Gaps = 103/405 (25%)

Query: 3   ASLFTPFQQLESLDLSWNNIAGCVQNESLERL--SRLTNLKFLYLNDNHFNNSIFSSLGG 60
           A  F+ + + E   L   N     +NE++  L    +     L LN  + + S+  +L  
Sbjct: 27  ADYFSAWDKWEKQALPGEN-----RNEAVSLLKECLINQFSELQLNRLNLS-SLPDNLP- 79

Query: 61  LSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLG 120
              +  L +  N L  S+        ++LE LD   N +  L  P+    L+ L+     
Sbjct: 80  -PQITVLEITQNAL-ISLP----ELPASLEYLDACDNRLSTL--PELPASLKHLD----- 126

Query: 121 GSGIPRIDGSKVLQSIGSLP-SLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHV 179
                 +D ++ L  +  LP  L+ +   + +   T++ +     T+LE L +   +  +
Sbjct: 127 ------VDNNQ-LTMLPELPALLEYINADNNQL--TMLPELP---TSLEVLSV--RNNQL 172

Query: 180 SQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGE 239
           + L +      SL+ L                                DV+TN L+ +  
Sbjct: 173 TFLPELP---ESLEAL--------------------------------DVSTNLLESLPA 197

Query: 240 SMPSLNFLSLTNSSL----NKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQ 295
                +    T        N+ T + + +  L     + + DN L   +   L+  T+  
Sbjct: 198 VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQP 257

Query: 296 VLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTEN 355
             +      + +                              N     + D       EN
Sbjct: 258 DYHGPRIYFSMSDGQ--------------------------QNTLHRPLADAVTAWFPEN 291

Query: 356 ISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEI 400
             S       + E    + N F      L    +      F  ++
Sbjct: 292 KQSDVSQIWHAFEHEEHA-NTFSAFLDRLSDTVSARNTSGFREQV 335

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 12/88 (13%)

Query: 833 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 892
           +   ++ ++++ N L   +P     L     L+   N L+ T+P   ++LK    LD+  
Sbjct: 78  LPPQITVLEITQNALI-SLPELPASLEY---LDACDNRLS-TLPELPASLKH---LDVDN 129

Query: 893 NLLHGKIPPQLIVLNTLEVFKVAYNNLS 920
           N L   +P        LE      N L+
Sbjct: 130 NQLT-MLPEL---PALLEYINADNNQLT 153

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.0 bits (106), Expect = 1e-04
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 13/92 (14%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
             S+  +D   N+L+  +P     L     L++ +N LT  +P   + L   E ++   N
Sbjct: 99  PASLEYLDACDNRLS-TLPELPASLKH---LDVDNNQLT-MLPELPALL---EYINADNN 150

Query: 894 LLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPD 925
            L   +P       +LEV  V  N L+  +P+
Sbjct: 151 QLT-MLPEL---PTSLEVLSVRNNQLT-FLPE 177

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 95.9 bits (238), Expect = 2e-20
 Identities = 62/412 (15%), Positives = 117/412 (28%), Gaps = 88/412 (21%)

Query: 12  LESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLAD 71
           +         I      + +             L      +    +   L+S+  +   +
Sbjct: 1   MGETITVSTPI------KQIFPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANN 52

Query: 72  NRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSK 131
           + +     ++G+  L N+ +L + GN + ++   K    L+ L  L+L  + I  +    
Sbjct: 53  SDIK---SVQGIQYLPNVTKLFLNGNKLTDI---KPLTNLKNLGWLFLDENKIKDLSS-- 104

Query: 132 VLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTS 191
               +  L  LK+L L H           L +   LE L L             I   T 
Sbjct: 105 ----LKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLGN---------NKITDITV 148

Query: 192 LKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTN 251
           L  L                                                L+ LSL +
Sbjct: 149 LSRL----------------------------------------------TKLDTLSLED 162

Query: 252 SSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPG 311
              N+ + +   L  L  LQ LY+  N + D     LA + +L VL   S +        
Sbjct: 163 ---NQISDIV-PLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINH 216

Query: 312 LCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYN--QLTENISSSSLMHLTSIEE 369
              LV+   +   +  L    P  +++       +V ++  + T  +S      +T  + 
Sbjct: 217 QSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKA 274

Query: 370 LILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSIS 421
               +    Q    +  +           ++ A T         K       
Sbjct: 275 KARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKG 326

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 94.0 bits (233), Expect = 6e-20
 Identities = 55/252 (21%), Positives = 104/252 (41%), Gaps = 32/252 (12%)

Query: 9   FQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLS 68
           F +    +L   ++            + L ++  +  N++   +     +  L ++  L 
Sbjct: 20  FAETIKDNLKKKSV------TDAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 71

Query: 69  LADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRID 128
           L  N+L    DIK L +L NL  L +  N I++L      + L+KL +L L  +GI  I+
Sbjct: 72  LNGNKLT---DIKPLTNLKNLGWLFLDENKIKDL---SSLKDLKKLKSLSLEHNGISDIN 125

Query: 129 GSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIAS 188
           G      +  LP L++LYL + K         L   T L+ L L+++ +     +  +A 
Sbjct: 126 G------LVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQI---SDIVPLAG 173

Query: 189 FTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLS 248
            T L++L +    +      +     KNL+ L++   +     N       ++   N + 
Sbjct: 174 LTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQEC---LNKPINHQSNLVVPNTVK 227

Query: 249 LTNSSLNKHTIL 260
            T+ SL    I+
Sbjct: 228 NTDGSLVTPEII 239

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 93.6 bits (232), Expect = 9e-20
 Identities = 54/243 (22%), Positives = 92/243 (37%), Gaps = 25/243 (10%)

Query: 6   FTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLR 65
                 +  L L+ N +        ++ L+ L NL +L+L++N   +   SSL  L  L+
Sbjct: 61  IQYLPNVTKLFLNGNKL------TDIKPLTNLKNLGWLFLDENKIKD--LSSLKDLKKLK 112

Query: 66  HLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIP 125
            LSL  N ++   DI GL  L  LE L +  N I ++        L KL+TL L  + I 
Sbjct: 113 SLSLEHNGIS---DINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQIS 166

Query: 126 RIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQL--L 183
            I        +  L  L+ LYLS          + L    NL+ L L   +     +   
Sbjct: 167 DIVP------LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFSQECLNKPINHQ 217

Query: 184 QSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPS 243
            ++    ++K+        +      D+ K     +L     +V         +G++   
Sbjct: 218 SNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277

Query: 244 LNF 246
            + 
Sbjct: 278 FHG 280

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 89.0 bits (220), Expect = 3e-18
 Identities = 46/230 (20%), Positives = 88/230 (38%), Gaps = 16/230 (6%)

Query: 512 LPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSN 571
               ++ NL +   + +   +  ++  ++++  +N+ +   +         ++  L L+ 
Sbjct: 20  FAETIKDNLKKK--SVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNG 74

Query: 572 NRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLG 631
           N+L         NL NL  L LD N  I ++  SL     L+ L L  N +   I   L 
Sbjct: 75  NKLTD--IKPLTNLKNLGWLFLDENK-IKDL-SSLKDLKKLKSLSLEHNGI-SDIN-GLV 128

Query: 632 NLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKN 691
           +LP L+ + + NN +     +       L  L L +N I   +        ++ ++LSKN
Sbjct: 129 HLPQLESLYLGNNKITDITVLSRLT--KLDTLSLEDNQI-SDIVPLAGLTKLQNLYLSKN 185

Query: 692 KIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYI 741
            I   L ++     +L  L+L          N    L   N +      +
Sbjct: 186 HIS-DLRALAG-LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 84.4 bits (208), Expect = 7e-17
 Identities = 58/409 (14%), Positives = 120/409 (29%), Gaps = 103/409 (25%)

Query: 318 LRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHF 377
           + +    +  ++   P            ++    +T+     +   L SI+++I +N+  
Sbjct: 1   MGETITVSTPIKQIFPD--DAFAETIKDNLKKKSVTDA---VTQNELNSIDQIIANNSDI 55

Query: 378 FQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYH 437
                S++ +  L  +       N              +LT I              L +
Sbjct: 56  ----KSVQGIQYLPNVTKLFLNGN--------------KLTDIK------------PLTN 85

Query: 438 QHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFN 497
             +L  + L    +  +  +  L++   L++L L +N               ++ ++   
Sbjct: 86  LKNLGWLFLDENKIK-DLSS--LKDLKKLKSLSLEHN--------------GISDINGLV 128

Query: 498 NFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERM 557
           +             LP L  L L  N    +  +  + +  L+ L + +NQ++       
Sbjct: 129 H-------------LPQLESLYLGNN--KITDITVLSRLTKLDTLSLEDNQIS------- 166

Query: 558 ATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYL 617
                 +  LA                LT L  L L  N+ I ++  +L+    L  L L
Sbjct: 167 -----DIVPLA---------------GLTKLQNLYLSKNH-ISDL-RALAGLKNLDVLEL 204

Query: 618 SDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSC 677
                  K      NL     +   + +L  P  I           D    ++   LP  
Sbjct: 205 FSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG-------DYEKPNVKWHLPEF 257

Query: 678 FSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRID 726
            +  S                      P      +SY+     I  +++
Sbjct: 258 TNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVE 306

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 78.2 bits (192), Expect = 6e-15
 Identities = 43/245 (17%), Positives = 87/245 (35%), Gaps = 40/245 (16%)

Query: 531 SSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMT 590
                     + ++    +T  + +       S++ +  +N+ ++         L N+  
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVTQNELN---SIDQIIANNSDIK--SVQGIQYLPNVTK 69

Query: 591 LQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPI 650
           L L+GN  + +I + L+    L  L+L +N +   +   L +L  L+ + + +N +    
Sbjct: 70  LFLNGNK-LTDI-KPLTNLKNLGWLFLDENKI-KDLSS-LKDLKKLKSLSLEHNGISDIN 125

Query: 651 PIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTL 710
            +       L+ L L NN I                      I       +     L TL
Sbjct: 126 GLVHL--PQLESLYLGNNKI--------------------TDITV-----LSRLTKLDTL 158

Query: 711 DLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIP 770
            L  N +   I   +  L +L  L L+ N+I  ++   L  LK + +++L       +  
Sbjct: 159 SLEDNQIS-DIVP-LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNKPI 214

Query: 771 PCLVN 775
               N
Sbjct: 215 NHQSN 219

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.4 bits (156), Expect = 1e-10
 Identities = 43/187 (22%), Positives = 78/187 (41%), Gaps = 13/187 (6%)

Query: 596 NNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFC 655
           +  I +I              L    +   +      L ++  II  N++++    I++ 
Sbjct: 8   STPIKQI-FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYL 64

Query: 656 QRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYN 715
              ++  L L+ N +   +    +  ++  + L +NKI+  L S+  D   L +L L +N
Sbjct: 65  P--NVTKLFLNGNKL-TDIKPLTNLKNLGWLFLDENKIK-DLSSL-KDLKKLKSLSLEHN 119

Query: 716 SLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVN 775
            +   I   +  LPQL  L L +N I  +I V L +L ++  + L  N +S  I P    
Sbjct: 120 GIS-DING-LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIVPLAGL 174

Query: 776 TSLNEGY 782
           T L   Y
Sbjct: 175 TKLQNLY 181

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.6 bits (115), Expect = 1e-05
 Identities = 39/234 (16%), Positives = 82/234 (35%), Gaps = 59/234 (25%)

Query: 698 ESIIHDNP-----------HLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIP 746
           E+I    P             +  +L   S+  ++    + L  ++ ++  ++ IK  + 
Sbjct: 3   ETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ 59

Query: 747 VQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPG 806
             +  L  V  + L+ N L+  I P     +L   +  E     +               
Sbjct: 60  -GIQYLPNVTKLFLNGNKLT-DIKPLTNLKNLGWLFLDENKIKDL-------------SS 104

Query: 807 QSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNL 866
                                      L  +  + L  N ++ +I   + +L ++ +L L
Sbjct: 105 LKD------------------------LKKLKSLSLEHNGIS-DING-LVHLPQLESLYL 138

Query: 867 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLS 920
            +N +T    T  S L ++++L L  N +   I P L  L  L+   ++ N++S
Sbjct: 139 GNNKIT--DITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.3 bits (104), Expect = 2e-04
 Identities = 18/87 (20%), Positives = 25/87 (28%), Gaps = 6/87 (6%)

Query: 4   SLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSS 63
                  +L++L LS N+I        L  L+ L NL  L L      N   +    L  
Sbjct: 169 VPLAGLTKLQNLYLSKNHI------SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVV 222

Query: 64  LRHLSLADNRLNGSIDIKGLNSLSNLE 90
              +   D  L     I          
Sbjct: 223 PNTVKNTDGSLVTPEIISDDGDYEKPN 249

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 92.0 bits (229), Expect = 2e-20
 Identities = 50/210 (23%), Positives = 74/210 (35%), Gaps = 7/210 (3%)

Query: 513 PGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNN 572
                + L  N  +    +SF   + L  L + +N L   I     TG   LE L LS+N
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN 90

Query: 573 RLQGHIFSEKF-NLTNLMTLQLDGNNFIGEIPE-SLSKCYMLRGLYLSDNHLFGKIP-RW 629
                +    F  L  L TL LD    + E+          L+ LYL DN L   +P   
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNAL-QALPDDT 148

Query: 630 LGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSP-ASIEQVHL 688
             +L  L ++ +  N +       F    SL  L L  N +    P  F     +  ++L
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 689 SKNKIEGRLESIIHDNPHLVTLDLSYNSLH 718
             N +       +     L  L L+ N   
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 87.0 bits (216), Expect = 8e-19
 Identities = 44/205 (21%), Positives = 75/205 (36%), Gaps = 6/205 (2%)

Query: 490 LATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQL 549
              + +  N    H+P         L  L L  N       ++F  + +LE+LD+S+N  
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 550 TGEIPERMATGCFSLEILALSNNRLQGHIFSEKF-NLTNLMTLQLDGNNFIGEIPE-SLS 607
              +      G   L  L L    LQ  +    F  L  L  L L  N  +  +P+ +  
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA-LQALPDDTFR 150

Query: 608 KCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSN 667
               L  L+L  N +     R    L +L  +++  N +    P  F     L  L L  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 668 NSIFGTLPSCFSP-ASIEQVHLSKN 691
           N++        +P  +++ + L+ N
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 87.0 bits (216), Expect = 9e-19
 Identities = 47/176 (26%), Positives = 72/176 (40%), Gaps = 10/176 (5%)

Query: 3   ASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLS 62
           A+ FT    LE LDLS N     V   +      L  L  L+L+             GL+
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPAT---FHGLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 63  SLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGS 122
           +L++L L DN L  ++       L NL  L + GN I ++   + FRGL  L+ L L  +
Sbjct: 130 ALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGLHSLDRLLLHQN 187

Query: 123 GIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLH 178
            +  +      +    L  L TLYL        +  + L     L+ L L+++   
Sbjct: 188 RVAHVH-PHAFR---DLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 83.1 bits (206), Expect = 2e-17
 Identities = 45/262 (17%), Positives = 87/262 (33%), Gaps = 59/262 (22%)

Query: 340 TSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGE 399
            + + + +  N+++ ++ ++S     ++  L L +N   +I  +      L+ L+  +  
Sbjct: 32  AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAA--FTGLALLEQLDLS 88

Query: 400 INAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWL 459
            NAQ             L S+           P   +    L++++L    L  E    L
Sbjct: 89  DNAQ-------------LRSVD----------PATFHGLGRLHTLHLDRCGLQ-ELGPGL 124

Query: 460 LENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELN 519
                 L+ L L +N+L                           +P +    L  L  L 
Sbjct: 125 FRGLAALQYLYLQDNAL-------------------------QALPDDTFRDLGNLTHLF 159

Query: 520 LSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRL---QG 576
           L  N  +     +F  +  L+RL +  N++   +          L  L L  N L     
Sbjct: 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPT 218

Query: 577 HIFSEKFNLTNLMTLQLDGNNF 598
              +    L  L  L+L+ N +
Sbjct: 219 EALA---PLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 81.2 bits (201), Expect = 7e-17
 Identities = 45/217 (20%), Positives = 80/217 (36%), Gaps = 24/217 (11%)

Query: 12  LESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLAD 71
            + + L  N I+               NL  L+L+ N       ++  GL+ L  L L+D
Sbjct: 34  SQRIFLHGNRISHVPAAS----FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 72  NRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKD-FRGLRKLNTLYLGGSGIPRIDGS 130
           N    S+D    + L  L  L +    ++ L      FRGL  L  LYL  + +  +   
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQEL--GPGLFRGLAALQYLYLQDNALQALP-D 146

Query: 131 KVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSI---- 186
              +    L +L  L+L   +   +V  +      +L+ L+L ++       +  +    
Sbjct: 147 DTFR---DLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNR------VAHVHPHA 196

Query: 187 -ASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDM 222
                 L  L +    L  AL  +     + L+YL +
Sbjct: 197 FRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRL 232

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.5 bits (194), Expect = 6e-16
 Identities = 46/283 (16%), Positives = 83/283 (29%), Gaps = 81/283 (28%)

Query: 292 TSLQVLYASSNQLTGNISPG-LCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYN 350
            + Q ++   N+++ ++          L  L++ +N L          L  L  LD+S N
Sbjct: 32  AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 351 QLTENISSSSLMHLTSIEELILSNNHFFQIPI-SLEPLFNLSKLQTFNGEINAQTESHYD 409
               ++  ++   L  +  L L      ++       L  L  L                
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL---------------- 134

Query: 410 SLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETL 469
                                          L    L  L      P+    +  NL  L
Sbjct: 135 ------------------------------YLQDNALQAL------PDDTFRDLGNLTHL 158

Query: 470 LLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSI 529
            L  N              +++++      F+G         L  L  L L +N      
Sbjct: 159 FLHGN--------------RISSVP--ERAFRG---------LHSLDRLLLHQNRVAHVH 193

Query: 530 PSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNN 572
           P +F D+  L  L +  N L+  +P        +L+ L L++N
Sbjct: 194 PHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 75.4 bits (186), Expect = 7e-15
 Identities = 53/236 (22%), Positives = 79/236 (33%), Gaps = 54/236 (22%)

Query: 539 LERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKF-NLTNLMTLQLDGNN 597
            +R+ +  N+++  +P      C +L IL L +N L   I +  F  L  L  L L  N 
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNA 91

Query: 598 FIGEIP-ESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQ 656
            +  +   +      L  L+L    L    P     L  LQY                  
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY------------------ 133

Query: 657 RDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNS 716
                 L L +N++   LP                      +    D  +L  L L  N 
Sbjct: 134 ------LYLQDNAL-QALP----------------------DDTFRDLGNLTHLFLHGNR 164

Query: 717 LHGSIPNRI-DRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPP 771
           +  S+P R    L  L+ LLL  N +    P     L  +  + L  NNLS  +P 
Sbjct: 165 IS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPT 218

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 55/249 (22%), Positives = 89/249 (35%), Gaps = 48/249 (19%)

Query: 87  SNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLY 146
           +  + + + GN I ++     FR  R L  L+L  + + RID +        L  L+ L 
Sbjct: 32  AASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNVLARID-AAAFTG---LALLEQLD 86

Query: 147 LSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIAS-----FTSLKHLSMQDCV 201
           LS      +V     H    L  L LD         LQ +         +L++L +QD  
Sbjct: 87  LSDNAQLRSVDPATFHGLGRLHTLHLDRC------GLQELGPGLFRGLAALQYLYLQDNA 140

Query: 202 LKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILD 261
           L+ AL    F    NL +L +         N +     S+P   F  L +          
Sbjct: 141 LQ-ALPDDTFRDLGNLTHLFLHG-------NRIS----SVPERAFRGLHS---------- 178

Query: 262 QGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPG-LCELVLLRK 320
                   L  L +  N +    P    ++  L  LY  +N L+  +    L  L  L+ 
Sbjct: 179 --------LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQY 229

Query: 321 LYIDNNDLR 329
           L +++N   
Sbjct: 230 LRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 7/115 (6%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 892
           L ++  + L  N L   +P      L  +  L L  N ++      F  L  ++ L L  
Sbjct: 128 LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186

Query: 893 NLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRA--QFSTFEEDSYEGNPFLC 944
           N +   + P     L  L    +  NNLS  +P  A       +      NP++C
Sbjct: 187 NRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVC 239

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 2/96 (2%)

Query: 833 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 892
           I  +   I L  N+++            +  L L  N L       F+ L  +E LDLS 
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 893 NLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRA 927
           N     + P     L  L    +    L  ++    
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGL 124

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 86.9 bits (216), Expect = 2e-19
 Identities = 37/164 (22%), Positives = 73/164 (44%), Gaps = 18/164 (10%)

Query: 11  QLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLA 70
            L  + L+  N+        L  +    N+K L +N+ H  N  ++ + GLS+L  L + 
Sbjct: 45  SLTYITLANINV------TDLTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIM 96

Query: 71  DNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGS 130
              +  S  I  L+ L++L  LD++ +A ++ ++ K    L K+N++ L  +G       
Sbjct: 97  GKDV-TSDKIPNLSGLTSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNG-----AI 149

Query: 131 KVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDE 174
             +  + +LP LK+L +           + + +F  L +L    
Sbjct: 150 TDIMPLKTLPELKSLNIQFDGVHDY---RGIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 84.2 bits (209), Expect = 1e-18
 Identities = 32/162 (19%), Positives = 66/162 (40%), Gaps = 12/162 (7%)

Query: 236 IVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQ 295
           I    M SL +++L N ++   T    G+    +++ L I +    +  P  ++ +++L+
Sbjct: 38  ITEAQMNSLTYITLANINVTDLT----GIEYAHNIKDLTINNIHATNYNP--ISGLSNLE 91

Query: 296 VLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTEN 355
            L      +T +  P L  L  L  L I ++    S+   +  L  +  +D+SYN    +
Sbjct: 92  RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151

Query: 356 ISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFN 397
           I    L  L  ++ L +  +    +      + +  KL    
Sbjct: 152 I--MPLKTLPELKSLNIQFD---GV-HDYRGIEDFPKLNQLY 187

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 81.2 bits (201), Expect = 1e-17
 Identities = 26/143 (18%), Positives = 56/143 (39%), Gaps = 15/143 (10%)

Query: 9   FQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLS 68
              ++ L ++  +        +   +S L+NL+ L +      +    +L GL+SL  L 
Sbjct: 65  AHNIKDLTINNIHA------TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 69  LADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRID 128
           ++ +  +    +  +N+L  +  +D++ N    +      + L +L +L +   G+    
Sbjct: 119 ISHSAHD-DSILTKINTLPKVNSIDLSYN--GAITDIMPLKTLPELKSLNIQFDGVHDYR 175

Query: 129 GSKVLQSIGSLPSLKTLYLSHTK 151
           G      I   P L  LY     
Sbjct: 176 G------IEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 81.2 bits (201), Expect = 1e-17
 Identities = 33/156 (21%), Positives = 67/156 (42%), Gaps = 8/156 (5%)

Query: 242 PSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASS 301
           P   F +  N  L + +  +    Q+  L  + + + ++ D     +    +++ L  ++
Sbjct: 18  PDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 302 NQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSL 361
              T N +P +  L  L +L I   D+       L+ LTSL +LD+S++    +   + +
Sbjct: 76  IHAT-NYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD-DSILTKI 132

Query: 362 MHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFN 397
             L  +  + LS N        + PL  L +L++ N
Sbjct: 133 NTLPKVNSIDLSYNGAIT---DIMPLKTLPELKSLN 165

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 79.6 bits (197), Expect = 6e-17
 Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 9/114 (7%)

Query: 11  QLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLA 70
            LE L +   ++     ++ +  LS LT+L  L ++ +  ++SI + +  L  +  + L+
Sbjct: 89  NLERLRIMGKDV----TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 71  DNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGI 124
            N      DI  L +L  L+ L++  + + +    +      KLN LY     I
Sbjct: 145 YN--GAITDIMPLKTLPELKSLNIQFDGVHDY---RGIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 74.2 bits (183), Expect = 3e-15
 Identities = 26/164 (15%), Positives = 60/164 (36%), Gaps = 13/164 (7%)

Query: 213 KFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQG 272
           +  +L Y+ +  + V   T       E   ++  L++ N     +      +  L +L+ 
Sbjct: 42  QMNSLTYITLANINVTDLTGI-----EYAHNIKDLTINNIHATNYN----PISGLSNLER 92

Query: 273 LYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSL 332
           L I   D+       L+ +TSL +L  S +    +I   +  L  +  + +  N     +
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

Query: 333 PLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNH 376
              L  L  L+ L++ ++ +        +     + +L   +  
Sbjct: 153 M-PLKTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.1 bits (180), Expect = 9e-15
 Identities = 33/191 (17%), Positives = 74/191 (38%), Gaps = 22/191 (11%)

Query: 9   FQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLS 68
           F+   +  L  ++ A   + +       + +L ++ L + +  +   + +    +++ L+
Sbjct: 22  FKAYLNGLLGQSSTANITEAQ-------MNSLTYITLANINVTD--LTGIEYAHNIKDLT 72

Query: 69  LADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRID 128
           + +       +   ++ LSNLE L + G  + +  +P +  GL  L  L +  S      
Sbjct: 73  INNIHAT---NYNPISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHSAH---- 124

Query: 129 GSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIAS 188
              +L  I +LP + ++ LS+      +    L     L+ L +    +H     + I  
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFDGVHD---YRGIED 179

Query: 189 FTSLKHLSMQD 199
           F  L  L    
Sbjct: 180 FPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 33/185 (17%), Positives = 69/185 (37%), Gaps = 19/185 (10%)

Query: 37  LTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTG 96
                   L  +   N    +   ++SL +++LA+  +    D+ G+    N+++L +  
Sbjct: 22  FKAYLNGLLGQSSTANI---TEAQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINN 75

Query: 97  NAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTV 156
               N        GL  L  L + G  +     S  + ++  L SL  L +SH+    ++
Sbjct: 76  IHATNY---NPISGLSNLERLRIMGKDV----TSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 157 VNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKN 216
           +  K++    +  + L  S       +  + +   LK L++Q   +      +    F  
Sbjct: 129 LT-KINTLPKVNSIDL--SYNGAITDIMPLKTLPELKSLNIQFDGVHDY---RGIEDFPK 182

Query: 217 LEYLD 221
           L  L 
Sbjct: 183 LNQLY 187

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.9 bits (164), Expect = 1e-12
 Identities = 30/199 (15%), Positives = 62/199 (31%), Gaps = 17/199 (8%)

Query: 155 TVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKF 214
             VN     F      +L +S    + +  + A   SL ++++ +  +            
Sbjct: 13  DNVNIPDSTFKAYLNGLLGQSS--TANI--TEAQMNSLTYITLANINVTDL---TGIEYA 65

Query: 215 KNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLY 274
            N++ L +  +               + +L  L +    +    I    L  L  L  L 
Sbjct: 66  HNIKDLTINNIHATNYNPI-----SGLSNLERLRIMGKDVTSDKI--PNLSGLTSLTLLD 118

Query: 275 IRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPL 334
           I  +   D +   +  +  +  +  S N    +I P L  L  L+ L I  + +     +
Sbjct: 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGI 177

Query: 335 CLANLTSLRVLDVSYNQLT 353
              +   L  L      + 
Sbjct: 178 --EDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.0 bits (159), Expect = 5e-12
 Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 6   FTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLR 65
            +    L  LD+S +       +  L +++ L  +  + L+ N     I   L  L  L+
Sbjct: 108 LSGLTSLTLLDISHSAH----DDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELK 162

Query: 66  HLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAI 99
            L++  + ++   D +G+     L +L      I
Sbjct: 163 SLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.3 bits (152), Expect = 5e-11
 Identities = 27/159 (16%), Positives = 60/159 (37%), Gaps = 8/159 (5%)

Query: 513 PGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNN 572
                        + +   + A M  L  + ++N  +T       A    +++ L ++N 
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAH---NIKDLTINNI 76

Query: 573 RLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGN 632
                 ++    L+NL  L++ G +   +   +LS    L  L +S +     I   +  
Sbjct: 77  HATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134

Query: 633 LPTLQYI-IMPNNNLEGPIPIEFCQRDSLKILDLSNNSI 670
           LP +  I +  N  +   +P++      LK L++  + +
Sbjct: 135 LPKVNSIDLSYNGAITDIMPLKTLP--ELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 26/185 (14%), Positives = 67/185 (36%), Gaps = 11/185 (5%)

Query: 584 NLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPN 643
                +   L G +    I  + ++   L  + L++ ++       +     ++ + + N
Sbjct: 21  TFKAYLNGLL-GQSSTANI--TEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 644 NNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSP-ASIEQVHLSKNKIEGRLESIIH 702
            +     PI      +L+ L +    +        S   S+  + +S +  +  + + I+
Sbjct: 76  IHATNYNPISGLS--NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 703 DNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSH 762
             P + ++DLSYN     I   +  LP+L  L +  + +       +    ++  +    
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFS 190

Query: 763 NNLSG 767
             + G
Sbjct: 191 QTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 34/196 (17%), Positives = 69/196 (35%), Gaps = 22/196 (11%)

Query: 111 LRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEEL 170
            +      LG S    I       +   + SL  + L++           +    N+++L
Sbjct: 22  FKAYLNGLLGQSSTANI-------TEAQMNSLTYITLANINVTDL---TGIEYAHNIKDL 71

Query: 171 ILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVN 230
            ++            I+  ++L+ L +    +       +     +L  LD+     D +
Sbjct: 72  TINNIHATN---YNPISGLSNLERLRIMGKDVTS-DKIPNLSGLTSLTLLDISHSAHD-D 126

Query: 231 TNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLAN 290
           +   +I   ++P +N + L   S N        L  L  L+ L I+ + + D     + +
Sbjct: 127 SILTKI--NTLPKVNSIDL---SYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG--IED 179

Query: 291 MTSLQVLYASSNQLTG 306
              L  LYA S  + G
Sbjct: 180 FPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 10/160 (6%)

Query: 445 NLSHLNLSGEFPNWL--LENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQG 502
           +L+++ L+      L  +E   N++ L + N     +   PI     L  L +       
Sbjct: 45  SLTYITLANINVTDLTGIEYAHNIKDLTINNIHA--TNYNPISGLSNLERLRIMGKDVTS 102

Query: 503 HIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCF 562
                +   L  L  L++S +A + SI +    +  +  +D+S N    +I         
Sbjct: 103 DKIPNLSG-LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLP 159

Query: 563 SLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEI 602
            L+ L +  + +    +    +   L  L       IG  
Sbjct: 160 ELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQT-IGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
           L+++  + +    +T +    +  LT +  L++SH+    +I T  + L ++ S+DLSYN
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 894 LLHGKIPPQLIVLNTLEVFKVAYNNLS 920
                I P L  L  L+   + ++ + 
Sbjct: 147 GAITDIMP-LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 24/138 (17%), Positives = 46/138 (33%), Gaps = 13/138 (9%)

Query: 444 VNLSHLNLSGEFPNWL-----LENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNN 498
            N+  L ++            +   +NLE L +    +       +     L  LD+ ++
Sbjct: 66  HNIKDLTINN---IHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 499 FFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMA 558
                I  +I T LP +  ++LS N     I      +  L+ L+I  + +         
Sbjct: 123 AHDDSILTKINT-LPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG---I 177

Query: 559 TGCFSLEILALSNNRLQG 576
                L  L   +  + G
Sbjct: 178 EDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 25/143 (17%), Positives = 49/143 (34%), Gaps = 13/143 (9%)

Query: 634 PTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSI-----FGTLPSCFSPASIEQVHL 688
            T +  +           I   Q +SL  + L+N ++          +      I+ + +
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHN------IKDLTI 73

Query: 689 SKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQ 748
           +         + I    +L  L +    +       +  L  L  L ++H+     I  +
Sbjct: 74  NNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

Query: 749 LCQLKEVRLIDLSHNNLSGRIPP 771
           +  L +V  IDLS+N     I P
Sbjct: 132 INTLPKVNSIDLSYNGAITDIMP 154

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
             ++  + ++    T   P  I  L+ +  L +   ++T       S L  +  LD+S++
Sbjct: 65  AHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 894 LLHGKIPPQLIVLNTLEVFKVAYNNLSGKI 923
                I  ++  L  +    ++YN     I
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 7/66 (10%)

Query: 11  QLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLA 70
           ++ S+DLS+N          +  L  L  LK L +  +  ++  +  +     L  L   
Sbjct: 137 KVNSIDLSYNG-----AITDIMPLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAF 189

Query: 71  DNRLNG 76
              + G
Sbjct: 190 SQTIGG 195

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 83.6 bits (207), Expect = 1e-17
 Identities = 48/231 (20%), Positives = 86/231 (37%), Gaps = 38/231 (16%)

Query: 9   FQQLESLDLSWNNIAGCVQNESLERLSRL----------------TNLKFLYLNDNHFNN 52
           F +    +L   ++   V    L  + ++                 N+  L+LN N   +
Sbjct: 23  FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD 82

Query: 53  SIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLR 112
                L  L +L  L L +N++    D+  L  L  L+ L +  N I ++        L 
Sbjct: 83  --IKPLANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGISDI---NGLVHLP 134

Query: 113 KLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELIL 172
           +L +LYLG + I  I        +  L  L TL L   +         L   T L+ L L
Sbjct: 135 QLESLYLGNNKITDITV------LSRLTKLDTLSLEDNQISDI---VPLAGLTKLQNLYL 185

Query: 173 DESDLHVSQLLQSIASFTSLKHLSMQD--CVLKGALHGQDFLKFKNLEYLD 221
            ++ +     L+++A   +L  L +    C+ K   H  + +    ++  D
Sbjct: 186 SKNHISD---LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 233

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 81.3 bits (201), Expect = 7e-17
 Identities = 53/327 (16%), Positives = 103/327 (31%), Gaps = 80/327 (24%)

Query: 29  ESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSN 88
           + +             L      +    +   L+S+  +   ++ +     ++G+  L N
Sbjct: 15  KQIFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK---SVQGIQYLPN 69

Query: 89  LEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLS 148
           + +L + GN + ++   K    L+ L  L+L  + +  +        +  L  LK+L L 
Sbjct: 70  VTKLFLNGNKLTDI---KPLANLKNLGWLFLDENKVKDLSS------LKDLKKLKSLSLE 120

Query: 149 HTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHG 208
           H                                    I+    L HL             
Sbjct: 121 HNG----------------------------------ISDINGLVHL------------- 133

Query: 209 QDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLV 268
                   LE L +G  ++   T         +  L+ LSL +   N+ + +   L  L 
Sbjct: 134 ------PQLESLYLGNNKITDITVL-----SRLTKLDTLSLED---NQISDIV-PLAGLT 178

Query: 269 HLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDL 328
            LQ LY+  N + D     LA + +L VL   S +           LV+   +   +  L
Sbjct: 179 KLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

Query: 329 RGSLPLCLANLTSLRVLDVSYNQLTEN 355
               P  +++       +V ++     
Sbjct: 237 --VTPEIISDDGDYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 80.5 bits (199), Expect = 1e-16
 Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 23/168 (13%)

Query: 6   FTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLR 65
                 +  L L+ N +        ++ L+ L NL +L+L++N   +   SSL  L  L+
Sbjct: 64  IQYLPNVTKLFLNGNKL------TDIKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLK 115

Query: 66  HLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIP 125
            LSL  N ++   DI GL  L  LE L +  N I ++        L KL+TL L  + I 
Sbjct: 116 SLSLEHNGIS---DINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQIS 169

Query: 126 RIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILD 173
            I        +  L  L+ LYLS          + L    NL+ L L 
Sbjct: 170 DIVP------LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELF 208

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 75.1 bits (185), Expect = 1e-14
 Identities = 44/230 (19%), Positives = 86/230 (37%), Gaps = 16/230 (6%)

Query: 512 LPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSN 571
               ++ NL + +       +  ++  ++++  +N+ +   +         ++  L L+ 
Sbjct: 23  FAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNG 77

Query: 572 NRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLG 631
           N+L         NL NL  L LD N  + ++  SL     L+ L L  N +       L 
Sbjct: 78  NKLTD--IKPLANLKNLGWLFLDENK-VKDL-SSLKDLKKLKSLSLEHNGI--SDINGLV 131

Query: 632 NLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKN 691
           +LP L+ + + NN +     +       L  L L +N I   +        ++ ++LSKN
Sbjct: 132 HLPQLESLYLGNNKITDITVLSRLT--KLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKN 188

Query: 692 KIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYI 741
            I   L ++     +L  L+L          N    L   N +      +
Sbjct: 189 HIS-DLRALAG-LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 49/301 (16%), Positives = 103/301 (34%), Gaps = 69/301 (22%)

Query: 288 LANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDV 347
                           +T +      EL  + ++  +N+D++ S+   +  L ++  L +
Sbjct: 20  DDAFAETIKDNLKKKSVT-DAVT-QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFL 75

Query: 348 SYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESH 407
           + N+LT       L +L ++  L L  N   ++   L  L +L KL++ + E N      
Sbjct: 76  NGNKLT---DIKPLANLKNLGWLFLDEN---KV-KDLSSLKDLKKLKSLSLEHN------ 122

Query: 408 YDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLE 467
                    ++ I              L H   L S+ L +  ++ +     L   T L+
Sbjct: 123 --------GISDI------------NGLVHLPQLESLYLGNNKIT-DITV--LSRLTKLD 159

Query: 468 TLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNG 527
           TL L +N              +++ +                  L  L  L LS+N  + 
Sbjct: 160 TLSLEDN--------------QISDIVPLAG-------------LTKLQNLYLSKN--HI 190

Query: 528 SIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTN 587
           S   + A +K L+ L++ + +   +     +       +     + +   I S+  +   
Sbjct: 191 SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEK 250

Query: 588 L 588
            
Sbjct: 251 P 251

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 46/306 (15%), Positives = 98/306 (32%), Gaps = 72/306 (23%)

Query: 317 LLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNH 376
           L  +       ++                ++    +T+     +   L SI+++I +N+ 
Sbjct: 3   LGSETITVPTPIKQIFSD--DAFAETIKDNLKKKSVTDA---VTQNELNSIDQIIANNSD 57

Query: 377 FFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLY 436
                 S++ +  L  +       N              +LT I              L 
Sbjct: 58  I----KSVQGIQYLPNVTKLFLNGN--------------KLTDIK------------PLA 87

Query: 437 HQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVF 496
           +  +L  + L    +  +  +  L++   L++L L +N               ++ ++  
Sbjct: 88  NLKNLGWLFLDENKVK-DLSS--LKDLKKLKSLSLEHN--------------GISDINGL 130

Query: 497 NNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPER 556
            +             LP L  L L  N    +  +  + +  L+ L + +NQ++ +I   
Sbjct: 131 VH-------------LPQLESLYLGNN--KITDITVLSRLTKLDTLSLEDNQIS-DIVP- 173

Query: 557 MATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLY 616
              G   L+ L LS N +          L NL  L+L     + +     S   +   + 
Sbjct: 174 -LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 230

Query: 617 LSDNHL 622
            +D  L
Sbjct: 231 NTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 42/228 (18%), Positives = 85/228 (37%), Gaps = 40/228 (17%)

Query: 539 LERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNF 598
             + ++    +T  + +       S++ +  +N+ ++         L N+  L L+GN  
Sbjct: 26  TIKDNLKKKSVTDAVTQNELN---SIDQIIANNSDIK--SVQGIQYLPNVTKLFLNGNK- 79

Query: 599 IGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRD 658
           + +I + L+    L  L+L +N +   +   L +L  L+ + + +N +     +      
Sbjct: 80  LTDI-KPLANLKNLGWLFLDENKV-KDLSS-LKDLKKLKSLSLEHNGISDINGLVHLP-- 134

Query: 659 SLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLH 718
            L+ L L NN I                      I       +     L TL L  N + 
Sbjct: 135 QLESLYLGNNKI--------------------TDITV-----LSRLTKLDTLSLEDNQIS 169

Query: 719 GSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 766
             I   +  L +L  L L+ N+I  ++   L  LK + +++L      
Sbjct: 170 -DIVP-LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.0 bits (138), Expect = 9e-09
 Identities = 43/193 (22%), Positives = 80/193 (41%), Gaps = 13/193 (6%)

Query: 588 LMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLE 647
           L +  +     I +I  S           L    +   +      L ++  II  N++++
Sbjct: 3   LGSETITVPTPIKQI-FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 59

Query: 648 GPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHL 707
               I++    ++  L L+ N +   +    +  ++  + L +NK++  L S+  D   L
Sbjct: 60  SVQGIQYLP--NVTKLFLNGNKL-TDIKPLANLKNLGWLFLDENKVK-DLSSL-KDLKKL 114

Query: 708 VTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSG 767
            +L L +N +   I   +  LPQL  L L +N I  +I V L +L ++  + L  N +S 
Sbjct: 115 KSLSLEHNGIS-DING-LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS- 169

Query: 768 RIPPCLVNTSLNE 780
            I P    T L  
Sbjct: 170 DIVPLAGLTKLQN 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 80.5 bits (199), Expect = 1e-16
 Identities = 31/195 (15%), Positives = 74/195 (37%), Gaps = 27/195 (13%)

Query: 9   FQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLS 68
                  +L   ++        L     L+ ++    ++++  +   + +   ++L+ L 
Sbjct: 18  LANAVKQNLGKQSV------TDLVSQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELH 69

Query: 69  LADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRID 128
           L+ N+++   D+  L  L+ LEEL +  N ++NL    +      L+ L+L  + +   D
Sbjct: 70  LSHNQIS---DLSPLKDLTKLEELSVNRNRLKNL----NGIPSACLSRLFLDNNELRDTD 122

Query: 129 GSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIAS 188
                  +  L +L+ L + + K K       L   + LE L L  +++        +  
Sbjct: 123 S------LIHLKNLEILSIRNNKLKSI---VMLGFLSKLEVLDLHGNEITN---TGGLTR 170

Query: 189 FTSLKHLSMQDCVLK 203
              +  + +      
Sbjct: 171 LKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 75.4 bits (186), Expect = 5e-15
 Identities = 33/194 (17%), Positives = 74/194 (38%), Gaps = 24/194 (12%)

Query: 29  ESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSN 88
             +     L N     L      +    S   LS +++ +  ++ +     + G+   +N
Sbjct: 10  NQVFPDPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ---SLAGMQFFTN 64

Query: 89  LEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLS 148
           L+EL ++ N I +L      + L KL  L +  + +  ++G            L  L+L 
Sbjct: 65  LKELHLSHNQISDL---SPLKDLTKLEELSVNRNRLKNLNG-------IPSACLSRLFLD 114

Query: 149 HTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHG 208
           + + + T     L +  NLE L +  + L     +  +   + L+ L +    +    + 
Sbjct: 115 NNELRDT---DSLIHLKNLEILSIRNNKLKS---IVMLGFLSKLEVLDLHGNEIT---NT 165

Query: 209 QDFLKFKNLEYLDM 222
               + K + ++D+
Sbjct: 166 GGLTRLKKVNWIDL 179

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 71.6 bits (176), Expect = 9e-14
 Identities = 44/277 (15%), Positives = 92/277 (33%), Gaps = 54/277 (19%)

Query: 79  DIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGS 138
            +     L+N  + ++   ++ +LV     + L  +       S I  + G      +  
Sbjct: 11  QVFPDPGLANAVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQSLAG------MQF 61

Query: 139 LPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQ 198
             +LK L+LSH +         + + + L++L                   T L+ LS+ 
Sbjct: 62  FTNLKELHLSHNQ---------ISDLSPLKDL-------------------TKLEELSVN 93

Query: 199 DCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHT 258
              LK      + +    L  L +   ++    +        + +L  LS+ N   NK  
Sbjct: 94  RNRLKNL----NGIPSACLSRLFLDNNELRDTDSL-----IHLKNLEILSIRN---NKLK 141

Query: 259 ILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLL 318
            +   L  L  L+ L +  N++ +     L  +  +  +  +  +          EL + 
Sbjct: 142 SIV-MLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYIT 198

Query: 319 RKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTEN 355
             +   + D R   P  ++N  S     V +      
Sbjct: 199 NTVK--DPDGRWISPYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 65.8 bits (161), Expect = 7e-12
 Identities = 35/183 (19%), Positives = 75/183 (40%), Gaps = 14/183 (7%)

Query: 584 NLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPN 643
            L N +   L   + + ++  S  +   ++     ++++  +    +     L+ + + +
Sbjct: 17  GLANAVKQNLGKQS-VTDL-VSQKELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHLSH 72

Query: 644 NNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHD 703
           N +    P++      L+ L ++ N +     +    A + ++ L  N++    +S+IH 
Sbjct: 73  NQISDLSPLKDLT--KLEELSVNRNRL--KNLNGIPSACLSRLFLDNNELR-DTDSLIH- 126

Query: 704 NPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHN 763
             +L  L +  N L  SI   +  L +L  L L  N I       L +LK+V  IDL+  
Sbjct: 127 LKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQ 182

Query: 764 NLS 766
              
Sbjct: 183 KCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 45/218 (20%), Positives = 84/218 (38%), Gaps = 33/218 (15%)

Query: 183 LQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVG-ESM 241
           +       +    ++    +   L  Q   +   ++  +        N+N   + G +  
Sbjct: 12  VFPDPGLANAVKQNLGKQSVT-DLVSQK--ELSGVQNFNGD------NSNIQSLAGMQFF 62

Query: 242 PSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRD--GLPWCLANMTSLQVLYA 299
            +L  L L++   N+ + L   L  L  L+ L +  N L++  G+         L  L+ 
Sbjct: 63  TNLKELHLSH---NQISDLS-PLKDLTKLEELSVNRNRLKNLNGI-----PSACLSRLFL 113

Query: 300 SSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSS 359
            +N+L  +    L  L  L  L I NN L+ S+   L  L+ L VLD+  N++T   ++ 
Sbjct: 114 DNNELR-DTDS-LIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEIT---NTG 166

Query: 360 SLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFN 397
            L  L  +  + L+           EP+    +L   N
Sbjct: 167 GLTRLKKVNWIDLTGQ-----KCVNEPVKYQPELYITN 199

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 32/201 (15%), Positives = 70/201 (34%), Gaps = 15/201 (7%)

Query: 534 ADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQL 593
             +    + ++    +T  + ++  +    ++     N+ +Q    +     TNL  L L
Sbjct: 16  PGLANAVKQNLGKQSVTDLVSQKELS---GVQNFNGDNSNIQ--SLAGMQFFTNLKELHL 70

Query: 594 DGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIE 653
             N  I ++   L     L  L ++ N L   +         L  + + NN L     + 
Sbjct: 71  SHNQ-ISDL-SPLKDLTKLEELSVNRNRL-KNLN--GIPSACLSRLFLDNNELRDTDSLI 125

Query: 654 FCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLS 713
             +  +L+IL + NN +  ++      + +E + L  N+I       +     +  +DL+
Sbjct: 126 HLK--NLEILSIRNNKL-KSIVMLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLT 180

Query: 714 YNSLHGSIPNRIDRLPQLNYL 734
                         L   N +
Sbjct: 181 GQKCVNEPVKYQPELYITNTV 201

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 49/253 (19%), Positives = 77/253 (30%), Gaps = 48/253 (18%)

Query: 369 ELILSNNHFFQIPIS-LEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVD 427
           E I         PI+ + P   L+     N                   +T +       
Sbjct: 1   ESIQRPT-----PINQVFPDPGLANAVKQNLGKQ--------------SVTDLV------ 35

Query: 428 GGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSH 487
                        + + N  + N+        ++  TNL+ L L++N +  S   P+   
Sbjct: 36  ------SQKELSGVQNFNGDNSNIQSLAG---MQFFTNLKELHLSHNQI--SDLSPLKDL 84

Query: 488 QKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNN 547
            KL  L V  N     +    G     L  L L  N        S   +K LE L I NN
Sbjct: 85  TKLEELSVNRN----RLKNLNGIPSACLSRLFLDNN--ELRDTDSLIHLKNLEILSIRNN 138

Query: 548 QLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLS 607
           +L   I          LE+L L  N +          L  +  + L G   + E  +   
Sbjct: 139 KLK-SIVM--LGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKCVNEPVKYQP 193

Query: 608 KCYMLRGLYLSDN 620
           + Y+   +   D 
Sbjct: 194 ELYITNTVKDPDG 206

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 11/151 (7%)

Query: 630 LGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLS 689
              L       +   ++   +  +      ++  +  N++I  +L       +++++HLS
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQKEL--SGVQNFNGDNSNI-QSLAGMQFFTNLKELHLS 71

Query: 690 KNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQL 749
            N+I   L  +      L  L ++ N L  ++         L+ L L +N ++      L
Sbjct: 72  HNQIS-DLSPLKD-LTKLEELSVNRNRLK-NLNG--IPSACLSRLFLDNNELRDTDS--L 124

Query: 750 CQLKEVRLIDLSHNNLSGRIPPCLVNTSLNE 780
             LK + ++ + +N L   I      + L  
Sbjct: 125 IHLKNLEILSIRNNKLK-SIVMLGFLSKLEV 154

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 78.6 bits (193), Expect = 4e-15
 Identities = 29/138 (21%), Positives = 60/138 (43%), Gaps = 11/138 (7%)

Query: 8   PFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHL 67
            +  +  L L+  ++        L  L +L  +  L L+ N    ++  +L  L  L  L
Sbjct: 439 EYADVRVLHLAHKDL------TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVL 491

Query: 68  SLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRI 127
             +DN L    ++ G+ +L  L+EL +  N ++     +      +L  L L G+ + + 
Sbjct: 492 QASDNALE---NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548

Query: 128 DGSKVLQSIGSLPSLKTL 145
           +G +  +    LPS+ ++
Sbjct: 549 EGIQ-ERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 73.3 bits (179), Expect = 2e-13
 Identities = 68/393 (17%), Positives = 126/393 (32%), Gaps = 63/393 (16%)

Query: 15  LDLSWNNIAGCVQNESLERLSR----------LTNLKFLYLNDNHFNNSIFSSLGGLSSL 64
           L+L  N       ++S     R          +     +   +   +      L   S +
Sbjct: 212 LELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271

Query: 65  RHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLV--VPKDFRGLRKLNTLYLGGS 122
             L L  +    S++ +  +  +    + +      +L   +P+    +    +      
Sbjct: 272 GTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKEC 331

Query: 123 GIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQL 182
            + +       +   +   L    LS    K TV+  +L +   L+EL  +    +   L
Sbjct: 332 VLLKDRPECWCRDSATDEQLFRCELS--VEKSTVLQSELESCKELQELEPE----NKWCL 385

Query: 183 LQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVN-----TNFLQIV 237
           L  I    +L  L  +   L+          F  L+ +D        +          ++
Sbjct: 386 LTIILLMRALDPLLYEKETLQ---------YFSTLKAVDPMRAAYLDDLRSKFLLENSVL 436

Query: 238 GESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVL 297
                 +  L L +      T+L   L QL+ +  L +  N LR  LP  LA +  L+VL
Sbjct: 437 KMEYADVRVLHLAH---KDLTVLC-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVL 491

Query: 298 YASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENIS 357
            AS N L  N+                           +ANL  L+ L +  N+L ++ +
Sbjct: 492 QASDNALE-NVDG-------------------------VANLPRLQELLLCNNRLQQSAA 525

Query: 358 SSSLMHLTSIEELILSNNHFFQIPISLEPLFNL 390
              L+    +  L L  N   Q     E L  +
Sbjct: 526 IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 66.3 bits (161), Expect = 3e-11
 Identities = 44/250 (17%), Positives = 86/250 (34%), Gaps = 27/250 (10%)

Query: 431 FPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMP--IHSHQ 488
            P+  +      S +     L  + P     ++   E L     S+  S  +   + S +
Sbjct: 313 LPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCK 372

Query: 489 KLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQ 548
           +L  L+  N +          T +  +  L+            +      L+ +D     
Sbjct: 373 ELQELEPENKWCLL-------TIILLMRALDPLLY-----EKETLQYFSTLKAVDPMRAA 420

Query: 549 LTGEIPERMATG-------CFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGE 601
              ++  +              + +L L++  L   +      L  +  L L  +N +  
Sbjct: 421 YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDL-SHNRLRA 477

Query: 602 IPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEG-PIPIEFCQRDSL 660
           +P +L+    L  L  SDN L   +   + NLP LQ +++ NN L+             L
Sbjct: 478 LPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535

Query: 661 KILDLSNNSI 670
            +L+L  NS+
Sbjct: 536 VLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.7 bits (136), Expect = 3e-08
 Identities = 49/321 (15%), Positives = 98/321 (30%), Gaps = 39/321 (12%)

Query: 158 NQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNL 217
           ++ L   + +  L+L   +  +S   ++        H+ + D              F+ +
Sbjct: 262 SRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVI 321

Query: 218 EYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRD 277
                   +  +  +  +       +   L     S+ K T+L   L     LQ L   +
Sbjct: 322 WTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPEN 381

Query: 278 NDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDN--NDLRGSLPLC 335
                 +   +  +  L     +    +      L  +  +R  Y+D+  +       + 
Sbjct: 382 KWCLLTIILLMRALDPLLYEKETLQYFST-----LKAVDPMRAAYLDDLRSKFLLENSVL 436

Query: 336 LANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQT 395
                 +RVL +++  LT       L  L  +  L LS+N    +P +L  L  L  LQ 
Sbjct: 437 KMEYADVRVLHLAHKDLT---VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA 493

Query: 396 FNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEF 455
            +  +                    ++ G          + +   L  + L +  L    
Sbjct: 494 SDNALE-------------------NVDG----------VANLPRLQELLLCNNRLQQSA 524

Query: 456 PNWLLENNTNLETLLLANNSL 476
               L +   L  L L  NSL
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.5 bits (133), Expect = 6e-08
 Identities = 39/350 (11%), Positives = 90/350 (25%), Gaps = 34/350 (9%)

Query: 572 NRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLG 631
              +  +   + +              +              G  L           W  
Sbjct: 230 FYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRT 289

Query: 632 NLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKN 691
                +   +   +L      +   + + +++   ++S    +     P           
Sbjct: 290 PDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPEC--------- 340

Query: 692 KIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ 751
                       +  L   +LS       + + ++   +L  L   + +    I + +  
Sbjct: 341 -----WCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRA 394

Query: 752 LKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPP 811
           L  +     +    S                   V P           +           
Sbjct: 395 LDPLLYEKETLQYFSTLK---------------AVDPMRAAYLDDLRSKFLLENSVLKME 439

Query: 812 MGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNL 871
                 +    K+++       L  ++ +DLS N+L   +P  +  L  +  L  S N L
Sbjct: 440 YADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL 498

Query: 872 TGTIPTTFSNLKQIESLDLSYNLLHG-KIPPQLIVLNTLEVFKVAYNNLS 920
              +    +NL +++ L L  N L        L+    L +  +  N+L 
Sbjct: 499 E-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.8 bits (126), Expect = 4e-07
 Identities = 39/236 (16%), Positives = 72/236 (30%), Gaps = 17/236 (7%)

Query: 323 IDNNDLRGSLPLCLANLTSLRVLDVSYNQLTE-NISSSSLMHLTSIEELILSNNHFFQIP 381
           +   D         A    L   ++S  + T       S   L  +E    +      I 
Sbjct: 332 VLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELE--PENKWCLLTII 389

Query: 382 ISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDL 441
           + +  L  L   +      +               L S  L                 D+
Sbjct: 390 LLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLEN------SVLKMEYADV 443

Query: 442 NSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQ 501
             ++L+H +L+    +  LE    +  L L++N L  +    + + + L  L   +N  +
Sbjct: 444 RVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499

Query: 502 GHIPVEIGTYLPGLMELNLSRNAFNG-SIPSSFADMKMLERLDISNNQLTGEIPER 556
            ++   +   LP L EL L  N     +          L  L++  N L  E   +
Sbjct: 500 -NVD-GVAN-LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.3 bits (122), Expect = 1e-06
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 9/91 (9%)

Query: 6   FTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNN-SIFSSLGGLSSL 64
               + LE L  S N +      E+++ ++ L  L+ L L +N     +    L     L
Sbjct: 482 LAALRCLEVLQASDNAL------ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535

Query: 65  RHLSLADNRLNGSIDIKG--LNSLSNLEELD 93
             L+L  N L     I+      L ++  + 
Sbjct: 536 VLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 75.9 bits (187), Expect = 4e-15
 Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 14/185 (7%)

Query: 464 TNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRN 523
            +   L L+ N L+      +  + +L  L++        + V+    LP L  L+LS N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGT--LPVLGTLDLSHN 87

Query: 524 AFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQ---GHIFS 580
               S+P     +  L  LD+S N+LT  +P     G   L+ L L  N L+     + +
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 581 EKFNLTNLMTLQLDGNNFIGEIPESL-SKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYI 639
                  L  L L  NN + E+P  L +    L  L L +N L   IP+       L + 
Sbjct: 146 ---PTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSL-YTIPKGFFGSHLLPFA 200

Query: 640 IMPNN 644
            +  N
Sbjct: 201 FLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.1 bits (172), Expect = 4e-13
 Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 15/148 (10%)

Query: 3   ASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLS 62
            +   P+ +L  L+L    +        L+    L  L  L L+ N    S+      L 
Sbjct: 48  LATLMPYTRLTQLNLDRAELT------KLQVDGTLPVLGTLDLSHNQL-QSLPLLGQTLP 100

Query: 63  SLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKD-FRGLRKLNTLYLGG 121
           +L  L ++ NRL  S+ +  L  L  L+EL + GN ++ L  P        KL  L L  
Sbjct: 101 ALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTL--PPGLLTPTPKLEKLSLAN 157

Query: 122 SGIPRIDGSKVLQSIGSLPSLKTLYLSH 149
           + +  +        +  L +L TL L  
Sbjct: 158 NNLTELPAG----LLNGLENLDTLLLQE 181

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.1 bits (172), Expect = 4e-13
 Identities = 54/210 (25%), Positives = 77/210 (36%), Gaps = 32/210 (15%)

Query: 268 VHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNND 327
                L++ +N L       L   T L  L     +LT         L +L  L + +N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--KLQVDGTLPVLGTLDLSHNQ 88

Query: 328 LRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISL-EP 386
           L+ SLPL    L +L VLDVS+N+LT ++   +L  L  ++EL L  N    +P  L  P
Sbjct: 89  LQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 387 LFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSG----YVDGGTFPEFLYHQHDLN 442
              L KL   N  +        + L     L ++ L       +  G F           
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLE---NLDTLLLQENSLYTIPKGFF----------G 193

Query: 443 SVNLSHLNLSG----------EFPNWLLEN 462
           S  L    L G           F  WL +N
Sbjct: 194 SHLLPFAFLHGNPWLCNCEILYFRRWLQDN 223

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 50/226 (22%), Positives = 74/226 (32%), Gaps = 33/226 (14%)

Query: 539 LERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNF 598
              ++     LT  +P  +        IL LS N L     +     T L  L LD    
Sbjct: 12  HLEVNCDKRNLT-ALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE- 66

Query: 599 IGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRD 658
           + ++        +L  L LS N L   +P     LP L  + +  N L            
Sbjct: 67  LTKLQVD-GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 659 SLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLH 718
            L+ L L  N +  TLP                        ++   P L  L L+ N+L 
Sbjct: 125 ELQELYLKGNEL-KTLP----------------------PGLLTPTPKLEKLSLANNNLT 161

Query: 719 GSIPNRI-DRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHN 763
             +P  + + L  L+ LLL  N +   IP        +    L  N
Sbjct: 162 -ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.3 bits (149), Expect = 4e-10
 Identities = 53/287 (18%), Positives = 80/287 (27%), Gaps = 93/287 (32%)

Query: 290 NMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSY 349
            + S   +      LT  + P L        L++  N L       L   T L  L++  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 350 NQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLF-NLSKLQTFNGEINAQTESHY 408
            +LT          L  +  L LS+N    +P     L   L  L   +   N       
Sbjct: 65  AELT---KLQVDGTLPVLGTLDLSHNQLQSLP----LLGQTLPALTVLDVSFN------- 110

Query: 409 DSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLET 468
                  +LTS+ L      G                   L                L+ 
Sbjct: 111 -------RLTSLPL------GAL---------------RGL--------------GELQE 128

Query: 469 LLLANNSLFGSFRMPIHSHQKLATL--DVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFN 526
           L L  N              +L TL   +                 P L +L+L+ N   
Sbjct: 129 LYLKGN--------------ELKTLPPGLLTP-------------TPKLEKLSLANNNLT 161

Query: 527 GSIPSS-FADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNN 572
             +P+     ++ L+ L +  N L   IP +   G   L    L  N
Sbjct: 162 -ELPAGLLNGLENLDTLLLQENSLYT-IP-KGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.0 bits (138), Expect = 9e-09
 Identities = 36/163 (22%), Positives = 65/163 (39%), Gaps = 18/163 (11%)

Query: 615 LYLSDNHLFGKIPRWLGNLPT-LQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGT 673
           +     +L   +P    +LP     + +  N L             L  L+L    +   
Sbjct: 15  VNCDKRNL-TALPP---DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TK 69

Query: 674 LPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRI-DRLPQLN 732
           L    +   +  + LS N+++  L  +    P L  LD+S+N L  S+P      L +L 
Sbjct: 70  LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQ 127

Query: 733 YLLLAHNYIKGEIPV----QLCQLKEVRLIDLSHNNLSGRIPP 771
            L L  N +K  +P        +L++   + L++NNL+  +P 
Sbjct: 128 ELYLKGNELK-TLPPGLLTPTPKLEK---LSLANNNLT-ELPA 165

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 35/171 (20%), Positives = 65/171 (38%), Gaps = 29/171 (16%)

Query: 38  TNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGN 97
            +   L+L++N       ++L   + L  L+L    L     ++   +L  L  LD++ N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVLGTLDLSHN 87

Query: 98  AIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFK---- 153
            +++L  P   + L  L  L +  + +  +     L+    L  L+ LYL   + K    
Sbjct: 88  QLQSL--PLLGQTLPALTVLDVSFNRLTSLP-LGALR---GLGELQELYLKGNELKTLPP 141

Query: 154 GTVVNQKLHNFTNLEELILDESDLHVSQLLQSI-----ASFTSLKHLSMQD 199
           G      L     LE+L      L  +  L  +         +L  L +Q+
Sbjct: 142 GL-----LTPTPKLEKL-----SLANNN-LTELPAGLLNGLENLDTLLLQE 181

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 46/190 (24%), Positives = 75/190 (39%), Gaps = 17/190 (8%)

Query: 164 FTNLEELILDESDLHVSQLLQSI-ASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDM 222
             +   L L E+ L       +    +T L  L++    L      Q       L  LD+
Sbjct: 30  PKDTTILHLSENLL--YTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVLGTLDL 84

Query: 223 GWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGL-CQLVHLQGLYIRDNDLR 281
              Q+      L ++G+++P+L  L ++    N+ T L  G    L  LQ LY++ N+L+
Sbjct: 85  SHNQLQS----LPLLGQTLPALTVLDVSF---NRLTSLPLGALRGLGELQELYLKGNELK 137

Query: 282 DGLPWCLANMTSLQVLYASSNQLTGNISPGLCE-LVLLRKLYIDNNDLRGSLPLCLANLT 340
              P  L     L+ L  ++N LT  +  GL   L  L  L +  N L  ++P       
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH 195

Query: 341 SLRVLDVSYN 350
            L    +  N
Sbjct: 196 LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 6/113 (5%)

Query: 659 SLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLH 718
           S   ++    ++   LP    P     +HLS+N +     + +     L  L+L    L 
Sbjct: 11  SHLEVNCDKRNL-TALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL- 67

Query: 719 GSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPP 771
             +      LP L  L L+HN ++  +P+    L  + ++D+S N L+  +P 
Sbjct: 68  TKLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPL 117

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 893
           L  +  +DLS N+L   +P     L  +  L++S N LT         L +++ L L  N
Sbjct: 76  LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134

Query: 894 LL 895
            L
Sbjct: 135 EL 136

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 77.2 bits (190), Expect = 4e-15
 Identities = 43/244 (17%), Positives = 80/244 (32%), Gaps = 15/244 (6%)

Query: 503 HIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCF 562
            IP ++       +EL             +F+    LE+++IS N +   I   + +   
Sbjct: 23  EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 79

Query: 563 SLEILALSN-NRLQGHIFSEKF-NLTNLMTLQLDGNNFIGEIPE-SLSKCYMLRGLYLSD 619
            L  + +   N L  +I  E F NL NL  L +     I  +P+           L + D
Sbjct: 80  KLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQD 137

Query: 620 NHLFGKIP-RWLGNLPT-LQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSC 677
           N     I       L      + +  N ++      F      ++    NN++       
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV 197

Query: 678 FSPAS-IEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLL 736
           F  AS    + +S+ +I       + +   L             +P  +++L  L    L
Sbjct: 198 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT-LEKLVALMEASL 253

Query: 737 AHNY 740
            +  
Sbjct: 254 TYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.5 bits (183), Expect = 3e-14
 Identities = 51/239 (21%), Positives = 79/239 (33%), Gaps = 21/239 (8%)

Query: 440 DLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLF-----GSFRMPIHSHQKLATLD 494
           +   +      L             +LE + ++ N +        F     +  KL  + 
Sbjct: 31  NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVF----SNLPKLHEIR 85

Query: 495 VFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPS-SFADMKMLERLDISNNQLTGEI 553
           +       +I  E    LP L  L +S       +P            LDI +N     I
Sbjct: 86  IEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTI 144

Query: 554 PERMATGC-FSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPE-SLSKCYM 611
                 G  F   IL L+ N +Q  I +  FN T L  L L  NN + E+P         
Sbjct: 145 ERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASG 203

Query: 612 LRGLYLSDNHLFGKIPRW-LGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNS 669
              L +S   +   +P + L NL  L+       NL+    +E     +L    L+  S
Sbjct: 204 PVILDISRTRI-HSLPSYGLENLKKLR--ARSTYNLKKLPTLEKLV--ALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.5 bits (183), Expect = 3e-14
 Identities = 48/232 (20%), Positives = 91/232 (39%), Gaps = 14/232 (6%)

Query: 539 LERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKF-NLTNLMTLQLDGNN 597
              L     +L   I +   +G   LE + +S N +   I ++ F NL  L  ++++  N
Sbjct: 32  AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 598 FIGEIPES-LSKCYMLRGLYLSDNHLFGKIPR-WLGNLPTLQYIIMPNNNLEGPIPIE-F 654
            +  I          L+ L +S+  +   +P     +      + + +N     I    F
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 655 CQ-RDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSK-NKIEGRLESIIHDNPHLVTLDL 712
                   IL L+ N I     S F+   +++++LS  N +E     + H     V LD+
Sbjct: 150 VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209

Query: 713 SYNSLHGSIPNRI-DRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHN 763
           S   +H S+P+   + L +L        Y   ++P  L +L  +    L++ 
Sbjct: 210 SRTRIH-SLPSYGLENLKKLRAR---STYNLKKLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 63.7 bits (155), Expect = 8e-11
 Identities = 37/241 (15%), Positives = 69/241 (28%), Gaps = 27/241 (11%)

Query: 318 LRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSN-NH 376
             +L      LR       +    L  +++S N + E I +    +L  + E+ +   N+
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 377 FFQIPIS-LEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSG-----YVDGGT 430
              I     + L NL  L   N  I    + H        Q   + +        ++  +
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL---QKVLLDIQDNINIHTIERNS 148

Query: 431 FPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSL----FGSFRMPIHS 486
           F        +   + L+   +  E  N         E  L  NN+L       F      
Sbjct: 149 FVG---LSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASG- 203

Query: 487 HQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISN 546
                 LD+        +P      L  L   +         +P +   +  L    ++ 
Sbjct: 204 ---PVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEASLTY 255

Query: 547 N 547
            
Sbjct: 256 P 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.9 bits (153), Expect = 2e-10
 Identities = 35/215 (16%), Positives = 78/215 (36%), Gaps = 32/215 (14%)

Query: 6   FTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLND-NHFNNSIFSSLGGLSSL 64
           F+ F  LE +++S N++   ++ +    L +L  ++    N+  + N   F     L +L
Sbjct: 50  FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ---NLPNL 106

Query: 65  RHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLR-KLNTLYLGGSG 123
           ++L +++  +   +             LD+  N   + +    F GL  +   L+L  +G
Sbjct: 107 QYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165

Query: 124 IPRID---------------GSKVLQSIGS-----LPSLKTLYLSHTKFKGTVVNQKLHN 163
           I  I                 +  L+ + +           L +S T+   ++ +  L N
Sbjct: 166 IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLEN 224

Query: 164 FTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQ 198
              L          +  + L ++    +L   S+ 
Sbjct: 225 LKKLRAR-----STYNLKKLPTLEKLVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.9 bits (153), Expect = 2e-10
 Identities = 36/246 (14%), Positives = 73/246 (29%), Gaps = 19/246 (7%)

Query: 84  NSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLK 143
           +   N  EL      +  +     F G   L  + +  + +  +  + V     +LP L 
Sbjct: 27  DLPRNAIELRFVLTKLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEADVFS---NLPKLH 82

Query: 144 TLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLK 203
            + +        +  +   N  NL+ L++  + +     +  I S      L +QD +  
Sbjct: 83  EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS-LQKVLLDIQDNINI 141

Query: 204 GALHGQDFLKF-KNLEYLDMGWVQVDVNTNFLQIVGESM-PSLNFLSLTNSSLNKHTILD 261
             +    F+        L +         N +Q +  S         L  S  N    L 
Sbjct: 142 HTIERNSFVGLSFESVILWLNK-------NGIQEIHNSAFNGTQLDELNLSDNNNLEELP 194

Query: 262 QGLCQ-LVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRK 320
             +         L I    +     + L N+  L+     + +    +      LV L +
Sbjct: 195 NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEK----LVALME 250

Query: 321 LYIDNN 326
             +   
Sbjct: 251 ASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 35/176 (19%), Positives = 51/176 (28%), Gaps = 25/176 (14%)

Query: 3   ASLFTPFQQLESLDLSWNNIAGCVQNESLERLS--RLTNLKFLYLNDNHFNNSI----FS 56
              F     L+ L +S   I      + L  +          L + DN   ++I    F 
Sbjct: 97  PEAFQNLPNLQYLLISNTGI------KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 57  SLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNT 116
            L        L L  N +   I     N     E      N +E L     F G      
Sbjct: 151 GLSFE--SVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEEL-PNDVFHGASGPVI 206

Query: 117 LYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELIL 172
           L +  + I  +  S  L+   +L  L+     + K   T     L     L E  L
Sbjct: 207 LDISRTRIHSLP-SYGLE---NLKKLRARSTYNLKKLPT-----LEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.0 bits (135), Expect = 3e-08
 Identities = 39/252 (15%), Positives = 78/252 (30%), Gaps = 36/252 (14%)

Query: 12  LESLDLSWNNIAGCVQNESLER--LSRLTNLKFLYLNDNHFNNSI-FSSLGGLSSLRHLS 68
              L      +        +++   S   +L+ + ++ N     I       L  L  + 
Sbjct: 32  AIELRFVLTKL------RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85

Query: 69  LADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGG-SGIPRI 127
           +        I+ +   +L NL+ L ++   I++L          +   L +     I  I
Sbjct: 86  IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL-PDVHKIHSLQKVLLDIQDNINIHTI 144

Query: 128 DGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSI- 186
           +       +        L+L+        ++    N T L+EL     +L  +  L+ + 
Sbjct: 145 E-RNSFVGLSFE--SVILWLNKNGI--QEIHNSAFNGTQLDEL-----NLSDNNNLEELP 194

Query: 187 -ASFTSLKHLSMQDCVLKG--ALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVG--ESM 241
              F       + D       +L        K L            +T  L+ +   E +
Sbjct: 195 NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR---------STYNLKKLPTLEKL 245

Query: 242 PSLNFLSLTNSS 253
            +L   SLT  S
Sbjct: 246 VALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.1 bits (125), Expect = 5e-07
 Identities = 37/190 (19%), Positives = 66/190 (34%), Gaps = 28/190 (14%)

Query: 586 TNLMTLQLDGNNFIGEIPE-SLSKCYMLRGLYLSDNHLFGKIPRW-LGNLPTLQYIIMPN 643
            N + L+      +  I + + S    L  + +S N +   I      NLP L  I +  
Sbjct: 30  RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 644 NNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHD 703
            N                +L ++    F  LP+      ++ + +S   I+   +     
Sbjct: 89  AN---------------NLLYINPE-AFQNLPN------LQYLLISNTGIKHLPDVHKIH 126

Query: 704 NPHLVTLDLSYNSLHGSIPNR-IDRLP-QLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLS 761
           +   V LD+  N    +I       L  +   L L  N I+ EI        ++  ++LS
Sbjct: 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLS 185

Query: 762 HNNLSGRIPP 771
            NN    +P 
Sbjct: 186 DNNNLEELPN 195

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 10/92 (10%)

Query: 840 IDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 899
                +K+T EIP+ +        L      L       FS    +E +++S N +   I
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 900 PPQ----LIVLNTLEVFKVAYNNLSGKIPDRA 927
                  L  L+ + + K   NNL   I   A
Sbjct: 71  EADVFSNLPKLHEIRIEK--ANNLL-YINPEA 99

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 73.9 bits (182), Expect = 5e-15
 Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 18/144 (12%)

Query: 9   FQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLS-SLRHL 67
            +  + L LS NNI      E +  LS + NL+ L L  N        +L  ++ +L  L
Sbjct: 47  LKACKHLALSTNNI------EKISSLSGMENLRILSLGRNLI--KKIENLDAVADTLEEL 98

Query: 68  SLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRI 127
            ++ N++     + G+  L NL  L M+ N I N         L KL  L L G+ +   
Sbjct: 99  WISYNQIA---SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155

Query: 128 DGSKVLQS------IGSLPSLKTL 145
                  S      +  LP+LK L
Sbjct: 156 YKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 72.8 bits (179), Expect = 1e-14
 Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 17/137 (12%)

Query: 14  SLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNR 73
            L      I           LS L   K L L+ N+      SSL G+ +LR LSL  N 
Sbjct: 29  ELHGMIPPIEKMDAT-----LSTLKACKHLALSTNNI--EKISSLSGMENLRILSLGRNL 81

Query: 74  LNGSIDIKGLNSLSN-LEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKV 132
           +     I+ L+++++ LEEL ++ N I +L        L  L  LY+  +   +I     
Sbjct: 82  IK---KIENLDAVADTLEELWISYNQIASL---SGIEKLVNLRVLYMSNN---KITNWGE 132

Query: 133 LQSIGSLPSLKTLYLSH 149
           +  + +L  L+ L L+ 
Sbjct: 133 IDKLAALDKLEDLLLAG 149

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 16/143 (11%)

Query: 238 GESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLR--DGLPWCLANMTSLQ 295
                    + L    +     +D  L  L   + L +  N++     L    + M +L+
Sbjct: 19  SVVATEAEKVELHGM-IPPIEKMDATLSTLKACKHLALSTNNIEKISSL----SGMENLR 73

Query: 296 VLYASSNQLTGNISPGLCELVLLRKLYIDNN---DLRGSLPLCLANLTSLRVLDVSYNQL 352
           +L    N +   I         L +L+I  N    L G     +  L +LRVL +S N++
Sbjct: 74  ILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKI 127

Query: 353 TENISSSSLMHLTSIEELILSNN 375
           T       L  L  +E+L+L+ N
Sbjct: 128 TNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 37/167 (22%), Positives = 66/167 (39%), Gaps = 18/167 (10%)

Query: 581 EKFNLTNLMTLQLDGN-NFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYI 639
           +    T    ++L G    I ++  +LS     + L LS N++  KI   L  +  L+ +
Sbjct: 18  KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI-EKI-SSLSGMENLRIL 75

Query: 640 IMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLES 699
            +  N ++    ++    D+L+ L +S N I  +L       ++  +++S NKI      
Sbjct: 76  SLGRNLIKKIENLDAVA-DTLEELWISYNQI-ASLSGIEKLVNLRVLYMSNNKIT-NWGE 132

Query: 700 IIH--DNPHLVTLDLSYNSLHGSIPNR----------IDRLPQLNYL 734
           I        L  L L+ N L+                + RLP L  L
Sbjct: 133 IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 29/168 (17%), Positives = 59/168 (35%), Gaps = 28/168 (16%)

Query: 66  HLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIP 125
            L      +   +D   L++L   + L ++ N IE +       G+  L  L LG + I 
Sbjct: 29  ELHGMIPPIEK-MD-ATLSTLKACKHLALSTNNIEKI---SSLSGMENLRILSLGRNLIK 83

Query: 126 RIDGSKVLQSIGSLPSLKTLYLSH---TKFKGTVVNQKLHNFTNLEELILDESDLHVSQL 182
           +I+    +       +L+ L++S+       G      +    NL  L +  + +     
Sbjct: 84  KIENLDAV-----ADTLEELWISYNQIASLSG------IEKLVNLRVLYMSNNKITNWGE 132

Query: 183 LQSIASFTSLKHLSMQD--CVLKGALHGQD-------FLKFKNLEYLD 221
           +  +A+   L+ L +           +            +  NL+ LD
Sbjct: 133 IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 8/125 (6%)

Query: 239 ESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLY 298
            ++ +   L+L+ +++ K  I    L  + +L+ L +  N ++  +    A   +L+ L+
Sbjct: 45  STLKACKHLALSTNNIEK--I--SSLSGMENLRILSLGRNLIKK-IENLDAVADTLEELW 99

Query: 299 ASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPL-CLANLTSLRVLDVSYNQLTENIS 357
            S NQ+  ++S G+ +LV LR LY+ NN +     +  LA L  L  L ++ N L  +  
Sbjct: 100 ISYNQIA-SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157

Query: 358 SSSLM 362
            ++  
Sbjct: 158 ENNAT 162

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 16/101 (15%)

Query: 5   LFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNN-SIFSSLGGLSS 63
           L      LE L +S+N I       SL  + +L NL+ LY+++N   N      L  L  
Sbjct: 88  LDAVADTLEELWISYNQI------ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141

Query: 64  LRHLSLADNRLNGSIDIKG---------LNSLSNLEELDMT 95
           L  L LA N L                 +  L NL++LD  
Sbjct: 142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGM 182

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 38/201 (18%), Positives = 70/201 (34%), Gaps = 48/201 (23%)

Query: 158 NQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNL 217
            +K    T  E++ L      + ++  ++++  + KHL+         L   +  K  +L
Sbjct: 16  ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLA---------LSTNNIEKISSL 66

Query: 218 EYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRD 277
             +                      +L  LSL     N    ++        L+ L+I  
Sbjct: 67  SGM---------------------ENLRILSL---GRNLIKKIENLDAVADTLEELWISY 102

Query: 278 NDLRDGLPWCLANMTSLQVLYASSNQLT--GNISPGLCELVLLRKLYIDNNDLRGSLPLC 335
           N +       +  + +L+VLY S+N++T  G I   L  L  L  L +  N L       
Sbjct: 103 NQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDK-LAALDKLEDLLLAGNPLYNDYKEN 159

Query: 336 ----------LANLTSLRVLD 346
                     +  L +L+ LD
Sbjct: 160 NATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 5/94 (5%)

Query: 687 HLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIP 746
           H     IE ++++ +        L LS N++   I + +  +  L  L L  N IK +I 
Sbjct: 31  HGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSLGRNLIK-KIE 86

Query: 747 VQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNE 780
                   +  + +S+N ++  +       +L  
Sbjct: 87  NLDAVADTLEELWISYNQIA-SLSGIEKLVNLRV 119

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 76.0 bits (187), Expect = 9e-15
 Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 10/167 (5%)

Query: 12  LESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLAD 71
              LDLS NN++      +    +RLTNL  L L+ NH N     +   + +LR+L L+ 
Sbjct: 41  TALLDLSHNNLSRLRAEWT---PTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97

Query: 72  NRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSK 131
           N L+ ++D    + L  LE L +  N I  +     F  + +L  LYL  + I R    +
Sbjct: 98  NHLH-TLDEFLFSDLQALEVLLLYNNHIVVV-DRNAFEDMAQLQKLYLSQNQISRFP-VE 154

Query: 132 VLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLH 178
           +++    LP L  L LS  K K       L +   L   + +   LH
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLK----KLPLTDLQKLPAWVKNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 75.7 bits (186), Expect = 1e-14
 Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 7/160 (4%)

Query: 268 VHLQGLYIRDNDLRDGLP-WCLANMTSLQVLYASSNQLTGNISPG-LCELVLLRKLYIDN 325
            +   L +  N+L      W    +T+L  L  S N L   IS      +  LR L + +
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 326 NDLRGSLP-LCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPI-S 383
           N L  +L     ++L +L VL +  N +   +  ++   +  +++L LS N   + P+  
Sbjct: 98  NHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155

Query: 384 LEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLS 423
           ++    L KL   +   N   +     L          L 
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 21/150 (14%)

Query: 6   FTPFQQLESLDLSWNNIAGCVQNESLER--LSRLTNLKFLYLNDNH---FNNSIFSSLGG 60
            T    L SL LS N++        +       + NL++L L+ NH    +  +FS    
Sbjct: 60  PTRLTNLHSLLLSHNHL------NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS---D 110

Query: 61  LSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLV--VPKDFRGLRKLNTLY 118
           L +L  L L +N +   +D      ++ L++L ++ N I      + KD   L KL  L 
Sbjct: 111 LQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD 169

Query: 119 LGGSGIPRIDGSKVLQSIGSLPSLKTLYLS 148
           L  + + ++  +     +  LP+     L 
Sbjct: 170 LSSNKLKKLPLT----DLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.5 bits (157), Expect = 5e-11
 Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 11/164 (6%)

Query: 38  TNLKFLYLNDNHFNN-SIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTG 96
           +    L L+ N+ +      +   L++L  L L+ N LN  I  +    + NL  LD++ 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 97  NAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTV 156
           N +  L     F  L+ L  L L  + I  +D     +    +  L+ LYLS  +     
Sbjct: 98  NHLHTL-DEFLFSDLQALEVLLLYNNHIVVVD-RNAFE---DMAQLQKLYLSQNQIS-RF 151

Query: 157 VNQKLHNFTNLEEL-ILDESDLHVSQLLQSIASFTSLKHLSMQD 199
             + + +   L +L +LD S   + +L   +     L       
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLKKL--PLTDLQKLPAWVKNG 193

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.9 bits (145), Expect = 2e-09
 Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 21/126 (16%)

Query: 6   FTPFQQLESLDLSWNNIAGCVQNESLER--LSRLTNLKFLYLNDNH---FNNSIFSSLGG 60
           F P   L  LDLS N++       +L+    S L  L+ L L +NH    + + F     
Sbjct: 84  FVPVPNLRYLDLSSNHL------HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE---D 134

Query: 61  LSSLRHLSLADNRLNGSID---IKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKL--N 115
           ++ L+ L L+ N+++       IK  N L  L  LD++ N ++ L    D + L     N
Sbjct: 135 MAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKL-PLTDLQKLPAWVKN 192

Query: 116 TLYLGG 121
            LYL  
Sbjct: 193 GLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.1 bits (143), Expect = 3e-09
 Identities = 50/173 (28%), Positives = 74/173 (42%), Gaps = 14/173 (8%)

Query: 601 EIPESLSKCYMLRGLYLSDNHLFGKIPRW-LGNLPTLQYIIMPNNNLEGPIPIE-FCQRD 658
            +P+SL        L LS N+L      W    L  L  +++ +N+L   I  E F    
Sbjct: 32  NVPQSLPSY--TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVP 88

Query: 659 SLKILDLSNNSIFGTLPS-CFSP-ASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNS 716
           +L+ LDLS+N +  TL    FS   ++E + L  N I     +   D   L  L LS N 
Sbjct: 89  NLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147

Query: 717 LHGSIPNRI----DRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLS-HNN 764
           +    P  +    ++LP+L  L L+ N +K      L +L       L  HNN
Sbjct: 148 IS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 52/202 (25%), Positives = 80/202 (39%), Gaps = 35/202 (17%)

Query: 545 SNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKF--NLTNLMTLQLDGNNFIGEI 602
           S  QL   +P+ + +      +L LS+N L   + +E     LTNL +L L  N+ +  I
Sbjct: 26  SKQQLP-NVPQSLPS---YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNH-LNFI 79

Query: 603 PE-SLSKCYMLRGLYLSDNHLFGKIPRW-LGNLPTLQYIIMPNNNLEGPIPIE-FCQRDS 659
              +      LR L LS NHL   +  +   +L  L+ +++ NN++   +    F     
Sbjct: 80  SSEAFVPVPNLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQ 137

Query: 660 LKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHG 719
           L+ L LS N I           +     L                P L+ LDLS N L  
Sbjct: 138 LQKLYLSQNQISRFPVELIKDGN----KL----------------PKLMLLDLSSNKLKK 177

Query: 720 SIPNRIDRLPQL--NYLLLAHN 739
                + +LP    N L L +N
Sbjct: 178 LPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 28/156 (17%), Positives = 54/156 (34%), Gaps = 27/156 (17%)

Query: 81  KGLNSL-----SNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQS 135
           + L ++     S    LD++ N +  L        L  L++L L  + +  I  S+    
Sbjct: 28  QQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFV- 85

Query: 136 IGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASF-----T 190
              +P+L+ L LS      T+      +   LE L+L  +       +  +         
Sbjct: 86  --PVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNH------IVVVDRNAFEDMA 136

Query: 191 SLKHLSMQDCVLK----GALHGQDFLKFKNLEYLDM 222
            L+ L +    +       +   + L    L  LD+
Sbjct: 137 QLQKLYLSQNQISRFPVELIKDGNKL--PKLMLLDL 170

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.2 bits (133), Expect = 5e-08
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 17/122 (13%)

Query: 659 SLKILDLSNNSIFGTLPSCFSPA---SIEQVHLSKNKIEGRLESIIHDN-----PHLVTL 710
              +LDLS+N++   L + ++P    ++  + LS N +     + I        P+L  L
Sbjct: 40  YTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHL-----NFISSEAFVPVPNLRYL 93

Query: 711 DLSYNSLHGSIPNRI-DRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRI 769
           DLS N LH ++   +   L  L  LLL +N+I          + +++ + LS N +S R 
Sbjct: 94  DLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RF 151

Query: 770 PP 771
           P 
Sbjct: 152 PV 153

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.8 bits (124), Expect = 7e-07
 Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 14/104 (13%)

Query: 3   ASLFTPFQQLESLDLSWNNIAGCVQNESLER--LSRLTNLKFLYLNDNH---FNNSIFSS 57
             LF+  Q LE L L  N+I        ++R     +  L+ LYL+ N    F   +   
Sbjct: 105 EFLFSDLQALEVLLLYNNHI------VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158

Query: 58  LGGLSSLRHLSLADNRLNGSIDIKGLNSLSNL--EELDMTGNAI 99
              L  L  L L+ N+L   + +  L  L       L +  N +
Sbjct: 159 GNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 39/197 (19%), Positives = 68/197 (34%), Gaps = 43/197 (21%)

Query: 340 TSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGE 399
           +   +LD+S+N L+   +  +   LT++  L+LS+NH   I         +  L+  +  
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA--FVPVPNLRYLDLS 96

Query: 400 INAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSG----EF 455
            N               L ++      D   F        DL    L  L L        
Sbjct: 97  SN--------------HLHTL------DEFLF-------SDL--QALEVLLLYNNHIVVV 127

Query: 456 PNWLLENNTNLETLLLANNSL----FGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTY 511
                E+   L+ L L+ N +        +   +   KL  LD+ +N  +  +P+     
Sbjct: 128 DRNAFEDMAQLQKLYLSQNQISRFPVELIK-DGNKLPKLMLLDLSSNKLK-KLPLTDLQK 185

Query: 512 LPGLME--LNLSRNAFN 526
           LP  ++  L L  N   
Sbjct: 186 LPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 8/99 (8%)

Query: 833 ILTSMSGIDLSCNKLTGEIPTQI--GYLTRIHALNLSHNNLTGTIPT-TFSNLKQIESLD 889
           + +  + +DLS N L+  +  +     LT +H+L LSHN+L   I +  F  +  +  LD
Sbjct: 37  LPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLD 94

Query: 890 LSYNLLHGKIPPQLIV-LNTLEVFKVAYNNLSGKIPDRA 927
           LS N LH  +   L   L  LEV  +  N++   +   A
Sbjct: 95  LSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNA 131

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 5/119 (4%)

Query: 3   ASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLS 62
            + F    QL+ L LS N I+     E ++  ++L  L  L L+ N       + L  L 
Sbjct: 129 RNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187

Query: 63  SLRH--LSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENL--VVPKDFRGLRKLNTL 117
           +     L L +N L     +  L S     +L    +  E+L  +  K    +  L+  
Sbjct: 188 AWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFF 246

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 41/217 (18%), Positives = 87/217 (40%), Gaps = 27/217 (12%)

Query: 539 LERLDISNNQLTGEIPERMATGCFSLEILALSNN----RLQGHIFSEKFNLTNLMTLQLD 594
            + L +    L   IP    +   ++  + +S +    +L+ H F    NL+ +  +++ 
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY---NLSKVTHIEIR 88

Query: 595 GNNFIGEIP-ESLSKCYMLRGLYLSDNHLFGKIP--RWLGNLPTLQYIIMPNNNLEGPIP 651
               +  I  ++L +  +L+ L + +  L    P    + +      + + +N     IP
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYMTSIP 147

Query: 652 IEFCQ--RDSLKILDLSNNSIFGTLPSC-FSPASIEQVHLSKNKIEGRLESIIHD----- 703
           +   Q   +    L L NN    ++    F+   ++ V+L+KNK    L  I  D     
Sbjct: 148 VNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNK---YLTVIDKDAFGGV 203

Query: 704 NPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNY 740
                 LD+S  S+  ++P++   L  L  L+  + +
Sbjct: 204 YSGPSLLDVSQTSVT-ALPSKG--LEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 33/188 (17%), Positives = 68/188 (36%), Gaps = 10/188 (5%)

Query: 490 LATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPS-SFADMKMLERLDISNNQ 548
             TL +     +  IP    + LP +  + +S +     + S SF ++  +  ++I N +
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 549 LTGEIPERMATGCFSLEILALSNNRLQGHI--FSEKFNLTNLMTLQLDGNNFIGEIPESL 606
               I          L+ L + N  L+      ++ ++      L++  N ++  IP + 
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 607 --SKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQ--RDSLKI 662
               C     L L +N     +  +  N   L  + +  N     I  +          +
Sbjct: 151 FQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 663 LDLSNNSI 670
           LD+S  S+
Sbjct: 210 LDVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 69.3 bits (170), Expect = 4e-13
 Identities = 40/239 (16%), Positives = 80/239 (33%), Gaps = 35/239 (14%)

Query: 539 LERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKF-NLTNLMTLQLDGNN 597
            E   ++   +   IP        S + L L    L+  I S  F NL N+  + +  + 
Sbjct: 13  EEDFRVTCKDIQ-RIPSLPP----STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDV 66

Query: 598 FIGEIPE-SLSKCYMLRGLYLSDNHLFGKIPR-WLGNLPTLQYIIMPNNNLEG-PIPIEF 654
            + ++   S      +  + + +      I    L  LP L+++ + N  L+  P   + 
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKV 126

Query: 655 CQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSY 714
              D   IL++++N    ++P                       +        +TL L  
Sbjct: 127 YSTDIFFILEITDNPYMTSIPV---------------------NAFQGLCNETLTLKLYN 165

Query: 715 NSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ--LKEVRLIDLSHNNLSGRIPP 771
           N    S+        +L+ + L  N     I             L+D+S  +++  +P 
Sbjct: 166 NGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPS 222

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 34/201 (16%), Positives = 66/201 (32%), Gaps = 31/201 (15%)

Query: 6   FTPFQQLESLDLSWNNIAGCVQNESLER--LSRLTNLKFLYLNDNHFNNSIFSS-LGGLS 62
           F+    +  + +S +        + LE      L+ +  + + +      I    L  L 
Sbjct: 51  FSNLPNISRIYVSIDV-----TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP 105

Query: 63  SLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRK-LNTLYLGG 121
            L+ L + +  L    D+  + S      L++T N     +    F+GL     TL L  
Sbjct: 106 LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165

Query: 122 SGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHN-----FTNLEELILDESD 176
           +G   +          +   L  +YL+         N+ L       F  +        D
Sbjct: 166 NGFTSVQ-----GYAFNGTKLDAVYLNK--------NKYLTVIDKDAFGGVYSG-PSLLD 211

Query: 177 LHVSQLLQSIAS--FTSLKHL 195
           +  +  + ++ S     LK L
Sbjct: 212 VSQTS-VTALPSKGLEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 37/222 (16%), Positives = 72/222 (32%), Gaps = 28/222 (12%)

Query: 12  LESLDLSWNNIAGCVQNESLER--LSRLTNLKFLYLNDNHFNNSIFS-SLGGLSSLRHLS 68
            ++L L   ++       ++     S L N+  +Y++ +     + S S   LS + H+ 
Sbjct: 33  TQTLKLIETHL------RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE 86

Query: 69  LADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRID 128
           + + R    ID   L  L  L+ L +    ++                L +  +      
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSI 146

Query: 129 GSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIAS 188
                Q + +     TL L +  F  T V     N T L+ +      L+ ++ L  I  
Sbjct: 147 PVNAFQGLCNE--TLTLKLYNNGF--TSVQGYAFNGTKLDAV-----YLNKNKYLTVIDK 197

Query: 189 ------FTSLKHLSMQDCVLK----GALHGQDFLKFKNLEYL 220
                 ++    L +    +       L     L  +N   L
Sbjct: 198 DAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWTL 239

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 17/138 (12%), Positives = 45/138 (32%), Gaps = 4/138 (2%)

Query: 37  LTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTG 96
             + + L L + H       +   L ++  + ++ +     ++     +LS +  +++  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 97  NAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTV 156
                 + P   + L  L  L +  +G+        L  + S      L ++   +  ++
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD---LTKVYSTDIFFILEITDNPYMTSI 146

Query: 157 VNQKLHNFTN-LEELILD 173
                    N    L L 
Sbjct: 147 PVNAFQGLCNETLTLKLY 164

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 52/254 (20%), Positives = 85/254 (33%), Gaps = 49/254 (19%)

Query: 133 LQSIGSLP-SLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTS 191
           +Q I SLP S +TL L  T  + T+ +    N  N+  +      + +   LQ + S + 
Sbjct: 23  IQRIPSLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRI-----YVSIDVTLQQLESHS- 75

Query: 192 LKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVG----ESMPSLNFL 247
                              F     + ++++       NT  L  +     + +P L FL
Sbjct: 76  -------------------FYNLSKVTHIEIR------NTRNLTYIDPDALKELPLLKFL 110

Query: 248 SLTNSSLNKHTILDQGLCQ-LVHLQGLYIRDNDLRDGLP-WCLANMTS-LQVLYASSNQL 304
            + N+ L      D            L I DN     +P      + +    L   +N  
Sbjct: 111 GIFNTGLK--MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168

Query: 305 TGNISPGLCELVLLRKLYI-DNNDLRGSLPLCLANLTS-LRVLDVSYNQLTENISSSSLM 362
           T ++         L  +Y+  N  L          + S   +LDVS   +T  + S  L 
Sbjct: 169 T-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSKGLE 226

Query: 363 HLTSIEELILSNNH 376
           HL     LI  N  
Sbjct: 227 HLKE---LIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 40/268 (14%), Positives = 80/268 (29%), Gaps = 47/268 (17%)

Query: 263 GLCQLVHLQGLYIRDNDLRD--GLPWCLANMTSLQVLYASSNQLTGNISPG-LCELVLLR 319
             C+    +   +   D++    LP       S Q L      L   I       L  + 
Sbjct: 6   PPCECHQEEDFRVTCKDIQRIPSLP------PSTQTLKLIETHLR-TIPSHAFSNLPNIS 58

Query: 320 KLYIDNNDLRGSLPL-CLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFF 378
           ++Y+  +     L      NL+ +  +++   +    I   +L  L  ++ L + N    
Sbjct: 59  RIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK 118

Query: 379 QIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQ 438
             P  L  +++           N               +TSI ++          F    
Sbjct: 119 MFP-DLTKVYSTDIFFILEITDNP-------------YMTSIPVNA---------FQGLC 155

Query: 439 HDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSH------QKLAT 492
           ++  ++ L +   +     +   N T L+ + L  N         I            + 
Sbjct: 156 NETLTLKLYNNGFT-SVQGYAF-NGTKLDAVYLNKNKYLTV----IDKDAFGGVYSGPSL 209

Query: 493 LDVFNNFFQGHIPVEIGTYLPGLMELNL 520
           LDV        +P +   +L  L+  N 
Sbjct: 210 LDVSQTSVT-ALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 34/175 (19%), Positives = 59/175 (33%), Gaps = 19/175 (10%)

Query: 3   ASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNN-SIFSSLGGL 61
           +  F    ++  +++        +  ++   L  L  LKFL + +         + +   
Sbjct: 73  SHSFYNLSKVTHIEIRNTRNLTYIDPDA---LKELPLLKFLGIFNTGLKMFPDLTKVYST 129

Query: 62  SSLRHLSLADNRLNGSIDIKGLNSLSN-LEELDMTGNAIENLVVPKDFRGLRKLNTLYLG 120
                L + DN    SI +     L N    L +  N   + V    F G  KL+ +YL 
Sbjct: 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGT-KLDAVYLN 187

Query: 121 G-SGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHN--FTNLEELIL 172
               +  ID       + S      L +S T          L +    +L+ELI 
Sbjct: 188 KNKYLTVID-KDAFGGVYSG--PSLLDVSQTSV------TALPSKGLEHLKELIA 233

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 36/248 (14%), Positives = 69/248 (27%), Gaps = 48/248 (19%)

Query: 86  LSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGS-----LP 140
             + + L +    +  +     F  L  ++ +Y+             LQ + S     L 
Sbjct: 30  PPSTQTLKLIETHLRTI-PSHAFSNLPNISRIYV--------SIDVTLQQLESHSFYNLS 80

Query: 141 SLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDC 200
            +  + + +T+    +    L     L+ L +  + L +   L  + S      L + D 
Sbjct: 81  KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDN 140

Query: 201 VLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTIL 260
               ++    F    N                              L L N   N  T +
Sbjct: 141 PYMTSIPVNAFQGLCNE--------------------------TLTLKLYN---NGFTSV 171

Query: 261 DQGLCQLVHLQGLYIRDN-DLRDGLPWCLANMTS-LQVLYASSNQLTGNISPGLCELVLL 318
                    L  +Y+  N  L          + S   +L  S   +T  +      L  L
Sbjct: 172 QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKG--LEHL 228

Query: 319 RKLYIDNN 326
           ++L   N 
Sbjct: 229 KELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 7/118 (5%)

Query: 2   NASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGL 61
           + +          L+++ N     +   + + L        L L +N F  S+       
Sbjct: 122 DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE--TLTLKLYNNGF-TSVQGYAFNG 178

Query: 62  SSLRHLSLADNRLNGSIDIKGLNSL-SNLEELDMTGNAIENLVVPKD-FRGLRKLNTL 117
           + L  + L  N+    ID      + S    LD++  ++  L  P      L++L   
Sbjct: 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL--PSKGLEHLKELIAR 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.1 bits (180), Expect = 4e-14
 Identities = 55/242 (22%), Positives = 96/242 (39%), Gaps = 40/242 (16%)

Query: 529 IPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQ---GHIFSEKFNL 585
           +P S       + LD+S N L   +          L++L LS   +Q      +    +L
Sbjct: 26  LPFS------TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ---SL 75

Query: 586 TNLMTLQLDGNNFIGEIPESL-SKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNN 644
           ++L TL L GN  I  +     S    L+ L   + +L       +G+L TL+ + + +N
Sbjct: 76  SHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 645 NL-EGPIPIEFCQRDSLKILDLSNNSIFGTLPS-CFSPASIEQVHLSKNKIEGRLESIIH 702
            +    +P  F    +L+ LDLS+N I  ++              L +  +         
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLR-------VLHQMPL--------- 177

Query: 703 DNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ-LKEVRLIDLS 761
                ++LDLS N ++  I     +  +L  L L  N +K  +P  +   L  ++ I L 
Sbjct: 178 ---LNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLH 232

Query: 762 HN 763
            N
Sbjct: 233 TN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 72.7 bits (179), Expect = 5e-14
 Identities = 44/208 (21%), Positives = 82/208 (39%), Gaps = 14/208 (6%)

Query: 517 ELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQ- 575
            L+LS N        SF     L+ LD+S  ++   I +        L  L L+ N +Q 
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 576 --GHIFSEKFNLTNLMTLQLDGNNFIGEIPESL-SKCYMLRGLYLSDNHL-FGKIPRWLG 631
                FS    L++L  L     N +  +          L+ L ++ N +   K+P +  
Sbjct: 91  LALGAFS---GLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 632 NLPTLQYIIMPNNNLEGPIPIEFCQRDSLKI----LDLSNNSIFGTLPSCFSPASIEQVH 687
           NL  L+++ + +N ++     +      + +    LDLS N +    P  F    ++++ 
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELA 206

Query: 688 LSKNKIEGRLESIIHDNPHLVTLDLSYN 715
           L  N+++   + I      L  + L  N
Sbjct: 207 LDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 39/213 (18%), Positives = 78/213 (36%), Gaps = 34/213 (15%)

Query: 267 LVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGL-CELVLLRKLYIDN 325
              LQ L +   +++        +++ L  L  + N +  +++ G    L  L+KL    
Sbjct: 51  FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVE 109

Query: 326 NDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLE 385
            +L       + +L +L+ L+V++N +          +LT++E L LS+N    I  +  
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD- 168

Query: 386 PLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVN 445
            L  L ++   N  ++               +  I        G F            + 
Sbjct: 169 -LRVLHQMPLLNLSLDLSL----------NPMNFI------QPGAF----------KEIR 201

Query: 446 LSHLNLSG----EFPNWLLENNTNLETLLLANN 474
           L  L L        P+ + +  T+L+ + L  N
Sbjct: 202 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.0 bits (172), Expect = 4e-13
 Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 34/210 (16%)

Query: 3   ASLFTPFQQLESLDLSWNNIAGCVQNESLER--LSRLTNLKFLYLNDNH---FNNSIFSS 57
           +  F  F +L+ LDLS   I       ++E      L++L  L L  N         FS 
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQ------TIEDGAYQSLSHLSTLILTGNPIQSLALGAFS- 97

Query: 58  LGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTL 117
             GLSSL+ L   +  L  S++   +  L  L+EL++  N I++  +P+ F  L  L  L
Sbjct: 98  --GLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154

Query: 118 YLGGSGIPRIDGSKVLQSIGSLPSLK-TLYLSHTKFKGTVVNQKLHN--FTNLEELILDE 174
            L  + I  I     L+ +  +P L  +L LS            +    F  +    L E
Sbjct: 155 DLSSNKIQSIY-CTDLRVLHQMPLLNLSLDLSLNPM------NFIQPGAFKEIR---LKE 204

Query: 175 SDLHVSQLLQSI-----ASFTSLKHLSMQD 199
             L  +Q L+S+        TSL+ + +  
Sbjct: 205 LALDTNQ-LKSVPDGIFDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 69.6 bits (171), Expect = 4e-13
 Identities = 57/267 (21%), Positives = 100/267 (37%), Gaps = 62/267 (23%)

Query: 38  TNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGN 97
            + K L L+ N   +    S      L+ L L+   +  +I+     SLS+L  L +TGN
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 98  AIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVV 157
            I++L     F GL  L  L    + +  ++       IG L +LK L ++H        
Sbjct: 87  PIQSLA-LGAFSGLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAH-------- 133

Query: 158 NQKLHNFTNLEELILDE--SDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFK 215
           N        ++   L E  S+L            T+L+HL +    ++ +++  D     
Sbjct: 134 NL-------IQSFKLPEYFSNL------------TNLEHLDLSSNKIQ-SIYCTDLRVLH 173

Query: 216 NLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYI 275
            +  L++                        L L   SLN    +  G  + + L+ L +
Sbjct: 174 QMPLLNLS-----------------------LDL---SLNPMNFIQPGAFKEIRLKELAL 207

Query: 276 RDNDLRDGLPWCLANMTSLQVLYASSN 302
             N L+         +TSLQ ++  +N
Sbjct: 208 DTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 66.5 bits (163), Expect = 5e-12
 Identities = 50/287 (17%), Positives = 98/287 (34%), Gaps = 86/287 (29%)

Query: 292 TSLQVLYASSNQLTGNISPG-LCELVLLRKLYIDNNDLRGSLPL-CLANLTSLRVLDVSY 349
            S + L  S N L  ++          L+ L +   +++ ++      +L+ L  L ++ 
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85

Query: 350 NQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYD 409
           N +  +++  +   L+S+++L+    +   +     P+ +L  L+  N   N        
Sbjct: 86  NPIQ-SLALGAFSGLSSLQKLVAVETNLASLENF--PIGHLKTLKELNVAHN-------- 134

Query: 410 SLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETL 469
                  + S  L  Y                     S+L              TNLE L
Sbjct: 135 ------LIQSFKLPEY--------------------FSNL--------------TNLEHL 154

Query: 470 LLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGL----MELNLSRNAF 525
            L++N +                           I       L  +    + L+LS N  
Sbjct: 155 DLSSNKI-------------------------QSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 526 NGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNN 572
           N   P +F +++ L+ L +  NQL   +P+ +     SL+ + L  N
Sbjct: 190 NFIQPGAFKEIR-LKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 15/167 (8%)

Query: 615 LYLSDNHLFGKIPRW-LGNLPTLQYIIMPNNNLEGPIPIE-FCQRDSLKILDLSNNSIFG 672
           L LS N L   +  +   + P LQ + +    ++  I    +     L  L L+ N I  
Sbjct: 33  LDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPI-Q 89

Query: 673 TLPS-CFS-PASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRI-DRLP 729
           +L    FS  +S++++   +  +       I     L  L++++N +           L 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 730 QLNYLLLAHNYIKGEIPVQ----LCQLKEVRL-IDLSHNNLSGRIPP 771
            L +L L+ N I+  I       L Q+  + L +DLS N ++  I P
Sbjct: 150 NLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQP 194

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 10/81 (12%)

Query: 824 NMSYYYQGRILTSM-SGI-------DLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTI 875
           N++Y         +   +       DLS N L             +  L+LS   +  TI
Sbjct: 9   NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TI 67

Query: 876 PT-TFSNLKQIESLDLSYNLL 895
               + +L  + +L L+ N +
Sbjct: 68  EDGAYQSLSHLSTLILTGNPI 88

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 74.5 bits (182), Expect = 1e-13
 Identities = 98/619 (15%), Positives = 193/619 (31%), Gaps = 168/619 (27%)

Query: 149 HTKFKGTVVNQKLHNFTNLEELILDE--SDL---HVSQLLQSIASFTSLKHLSMQ----- 198
           H  F+     +  + + ++  +  D    +     V  + +SI S   + H+ M      
Sbjct: 6   HMDFE---TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62

Query: 199 ------DCVL-KGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSL-- 249
                   +L K     Q F   + +  ++  ++   + T   Q    SM +  ++    
Sbjct: 63  GTLRLFWTLLSKQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQ---PSMMTRMYIEQRD 117

Query: 250 ----TNSSLNKHTI--------LDQGLCQL-------VH---------LQGLYIRDNDLR 281
                N    K+ +        L Q L +L       +          +         ++
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 282 DGLP----WC-LANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDN-NDLRGSLPLC 335
             +     W  L N  S + +     +L   I P                + ++  L   
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 336 LANL---TSLRVLD-VSYNQLTE--NISSSSLMHLTSIEELI--LSNNHFFQIPISLEPL 387
           L +      L VL  V   +     N+S   L+  T  +++   LS      I +     
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL-TTRFKQVTDFLSAATTTHISL----- 291

Query: 388 FNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLS 447
                            + H  +LTP  ++ S+ L  Y+     P+ L  +  + + N  
Sbjct: 292 -----------------DHHSMTLTPD-EVKSL-LLKYL--DCRPQDLPRE--VLTTNPR 328

Query: 448 HLNLSGE--------FPNWLLENNTNLETLLLAN-NSL-FGSFRMPIHSHQKLATL--DV 495
            L++  E        + NW   N   L T++ ++ N L    +R       +L+      
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR---KMFDRLSVFPPSA 385

Query: 496 FNNFFQGHIPVEIGTYLPGLMEL---NLSRNAFNGSIPSSFADMKMLERLDISNNQLTGE 552
                  HIP         L+ L   ++ ++     + +      ++E+      + T  
Sbjct: 386 -------HIP-------TILLSLIWFDVIKS-DVMVVVNKLHKYSLVEK---QPKESTIS 427

Query: 553 IPERMATGCFSLEILALSNNRLQGHI-------FSEKFNLTNLMTLQLDG--NNFIG--- 600
           IP         LE+     N    H          + F+  +L+   LD    + IG   
Sbjct: 428 IPSI------YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481

Query: 601 EIPESLSKCYMLRGLYLSDNHLFGKI----PRWLGN---LPTLQ-------YIIMPNNNL 646
           +  E   +  + R ++L    L  KI      W  +   L TLQ       YI   +   
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541

Query: 647 EGPIP--IEFCQRDSLKIL 663
           E  +   ++F  +    ++
Sbjct: 542 ERLVNAILDFLPKIEENLI 560

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 3e-07
 Identities = 79/486 (16%), Positives = 142/486 (29%), Gaps = 157/486 (32%)

Query: 568 ALSNNRLQGHIFSEKFNLTNLM----TLQLDGNN----FIGEI----------------- 602
            LS   +  HI   K  ++  +    TL          F+ E+                 
Sbjct: 45  ILSKEEID-HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103

Query: 603 -PESLSKCYM-LRGLYLSDNHLFGK--IPR---------WLGNLPTLQYIIMPNNNLEGP 649
            P  +++ Y+  R    +DN +F K  + R          L  L   + ++     ++G 
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL-----IDGV 158

Query: 650 -------IPIEFCQRDSLKILDLSNNSIF-GTLPSCFSPASIEQVHLSKNKIEGRLESII 701
                  + ++ C   S K+    +  IF   L +C SP ++         +E  L+ ++
Sbjct: 159 LGSGKTWVALDVCL--SYKVQCKMDFKIFWLNLKNCNSPETV---------LE-MLQKLL 206

Query: 702 H--DNPHLVTLDLSYNSLHGSIPNRIDRL-PQLNYLLLAHNYIKGEIPVQLCQLKEV--- 755
           +  D       D S N     I  RI  +  +L  LL +  Y        L  L  V   
Sbjct: 207 YQIDPNWTSRSDHSSN-----IKLRIHSIQAELRRLLKSKPY-----ENCLLVLLNVQNA 256

Query: 756 RLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKE 815
           +  +    NLS +I   L+ T                 R   V         +   +   
Sbjct: 257 KAWN--AFNLSCKI---LLTT-----------------RFKQVTDFLSAATTTHISLDHH 294

Query: 816 ETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEI----P---TQIGYLTRIHA----- 863
                T   +       +L     +D     L  E+    P   + I    R        
Sbjct: 295 SMT-LTPDEVK-----SLLLKY--LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 864 -LNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL-----HGKIPPQLI------------- 904
             +++ + LT  I ++ + L+  E   + ++ L        IP  L+             
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKM-FDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405

Query: 905 -VLNTLEVFKVA---YNNLSGKIPD-----RAQFSTFEE------DSYEGNPFLCGQPLS 949
            V+N L  + +        +  IP      + +            D Y          L 
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465

Query: 950 KSCNDN 955
               D 
Sbjct: 466 PPYLDQ 471

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 2e-05
 Identities = 47/266 (17%), Positives = 83/266 (31%), Gaps = 77/266 (28%)

Query: 29  ESL-ERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSS--LRHL--SLADNRLNGSIDIKGL 83
           ES+ + L+   N K  ++N +     I SSL  L     R +   L+    +  I    L
Sbjct: 335 ESIRDGLATWDNWK--HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392

Query: 84  NSL-SNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSL 142
           + +  ++ + D                    +N L+              L       S 
Sbjct: 393 SLIWFDVIKSD-----------VMVV-----VNKLH-----------KYSLVEKQPKEST 425

Query: 143 KTLYLSHTKFKGTVVNQK-LHNFTNLEELI--------LDESDLHVSQLLQSIASFTSLK 193
            ++   + + K  + N+  LH       ++         D  DL    L Q   S     
Sbjct: 426 ISIPSIYLELKVKLENEYALHR-----SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG-H 479

Query: 194 HLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSS 253
           H       LK   H +    F+ + +LD  +++        +I  +S       S+ N  
Sbjct: 480 H-------LKNIEHPERMTLFRMV-FLDFRFLEQ-------KIRHDSTAWNASGSILN-- 522

Query: 254 LNKHTILDQGLCQLVHLQGLYIRDND 279
               T+        +     YI DND
Sbjct: 523 ----TLQQ------LKFYKPYICDND 538

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 5e-04
 Identities = 101/631 (16%), Positives = 191/631 (30%), Gaps = 213/631 (33%)

Query: 92  LDMTGNAIEN------LVVPKDFRGLRKLNTLYL--GGSGIPRIDGSKVLQSIGSL---- 139
            DM  + +        ++      G  +L    L      + +     +  +   L    
Sbjct: 39  QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98

Query: 140 ------PSLKT-LYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVS--QLLQSIASFT 190
                 PS+ T +Y+            +L+N  + +      +  +VS  Q    +    
Sbjct: 99  KTEQRQPSMMTRMYIEQ--------RDRLYN--DNQVF----AKYNVSRLQPYLKLR--Q 142

Query: 191 SLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMG-----WVQVDVNTNFLQIVGESMPSLN 245
           +L  L     VL   + G             +      WV +DV  ++   V   M    
Sbjct: 143 ALLELRPAKNVL---IDG-------------VLGSGKTWVALDVCLSYK--VQCKMDFKI 184

Query: 246 F-LSLTNSS--------LNK-HTILDQGLCQLV-HLQGLYIRDNDLRDGLPWCLANM--- 291
           F L+L N +        L K    +D        H   + +R + ++  L   L +    
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 292 TSLQVL--YASSNQLTG-NISPGLCE-LVLLR-KLYID--NNDLRGSLPL--CLANLTS- 341
             L VL    ++      N+S   C+ L+  R K   D  +      + L      LT  
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLS---CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 342 ------LRVLDVSYNQLTENISSSSLMHLTSIEELILSN----NHFFQIPISLEPLFNLS 391
                 L+ LD     L   + +++   L+ I E I       +++  +        N  
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV--------NCD 353

Query: 392 KLQTFNGEINAQTESHYDSLTPK-FQLTSISLSGYVDGGTFPEFLYHQHDLNSVN----- 445
           KL T         ES  + L P  ++        +     FP          S +     
Sbjct: 354 KLTTII-------ESSLNVLEPAEYR------KMFDRLSVFPP---------SAHIPTIL 391

Query: 446 LSHLNLSGEFPNWLLENNTNLETLL--LANNSL----FGSFRMPIHS------------- 486
           LS +        W     +++  ++  L   SL         + I S             
Sbjct: 392 LSLI--------WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 487 --HQKL--------------ATLDVFNNFFQGHI--------PVEIGTYLPGLMELNLS- 521
             H+ +                    + +F  HI          E  T    +  L+   
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF-LDFRF 502

Query: 522 -----RN---AFN--GSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSN 571
                R+   A+N  GSI ++   +K  +   I +N       ER+        + A+ +
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPY-ICDND---PKYERL--------VNAILD 550

Query: 572 N--RLQGHIFSEKFNLTNLMTLQL-DGNNFI 599
              +++ ++   K+  T+L+ + L   +  I
Sbjct: 551 FLPKIEENLICSKY--TDLLRIALMAEDEAI 579

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 51/383 (13%), Positives = 105/383 (27%), Gaps = 111/383 (28%)

Query: 12  LESLDLSWNNI--AGCVQNESLERLSRLTNLKFLYLNDNHFNN----SIFSSLGGLSSLR 65
           +E   L  + I             L    ++K + L+ N         +  ++     L 
Sbjct: 6   IEGKSLKLDAITTEDEK--SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 66  HLSLADNRLNGSIDI---------KGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNT 116
               +D       D          + L     L  + ++ NA                  
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP--------------- 108

Query: 117 LYLGGSGIPRIDGSKVL-QSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDES 175
                         + L   +     L+ LYL +        N            +  ++
Sbjct: 109 -----------TAQEPLIDFLSKHTPLEHLYLHN--------NG-----------LGPQA 138

Query: 176 DLHVSQLLQSIASF------TSLKHLSMQDCVL--KGALH-GQDFLKFKNLEYLDMGWVQ 226
              +++ LQ +A          L+ +      L         + F   + L  + M    
Sbjct: 139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ-- 196

Query: 227 VDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRD---- 282
                N ++  G                    +L +GL     L+ L ++DN        
Sbjct: 197 -----NGIRPEGIE-----------------HLLLEGLAYCQELKVLDLQDNTFTHLGSS 234

Query: 283 GLPWCLANMTSLQVLYASSNQLTGN----ISPGL--CELVLLRKLYIDNNDLR--GSLPL 334
            L   L +  +L+ L  +   L+      +       E + L+ L +  N++       L
Sbjct: 235 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294

Query: 335 CLA---NLTSLRVLDVSYNQLTE 354
                  +  L  L+++ N+ +E
Sbjct: 295 KTVIDEKMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 70.9 bits (174), Expect = 5e-13
 Identities = 60/310 (19%), Positives = 106/310 (34%), Gaps = 74/310 (23%)

Query: 460 LENNTNLETLLLANNSL-------FGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYL 512
           L  + +++ ++L+ N++              I S + L   + F++ F G +  EI   L
Sbjct: 28  LLEDDSVKEIVLSGNTIGTEAARWLSEN---IASKKDLEIAE-FSDIFTGRVKDEIPEAL 83

Query: 513 ----------PGLMELNLSRNAFNGSIPSSFADM----KMLERLDISNNQLTGE------ 552
                     P L  + LS NAF  +      D       LE L + NN L  +      
Sbjct: 84  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 143

Query: 553 ------IPERMATGCFSLEILALSNNRLQ---GHIFSEKF-NLTNLMTLQLDGNNFIGE- 601
                    + A     L  +    NRL+      +++ F +   L T+++  N    E 
Sbjct: 144 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 203

Query: 602 ----IPESLSKCYMLRGLYLSDNHLFGK----IPRWLGNLPTLQYIIMPNNNL--EGPIP 651
               + E L+ C  L+ L L DN         +   L + P L+ + + +  L   G   
Sbjct: 204 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263

Query: 652 I----EFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHL 707
           +       +   L+ L L  N I           ++  +             I    P L
Sbjct: 264 VVDAFSKLENIGLQTLRLQYNEI--------ELDAVRTL----------KTVIDEKMPDL 305

Query: 708 VTLDLSYNSL 717
           + L+L+ N  
Sbjct: 306 LFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 52/285 (18%), Positives = 104/285 (36%), Gaps = 47/285 (16%)

Query: 10  QQLESLDLSWNNI--AGCVQNESL-ERLSRLTNLKFLYLNDNHFNN----------SIFS 56
             ++ + LS N I          L E ++   +L+    +D                +  
Sbjct: 32  DSVKEIVLSGNTIGTEAA---RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88

Query: 57  SLGGLSSLRHLSLADNRL--NGSIDI-KGLNSLSNLEELDMTGN------------AIEN 101
           +L     L  + L+DN         +   L+  + LE L +  N            A++ 
Sbjct: 89  ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE 148

Query: 102 LVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVL-QSIGSLPSLKTLYLSHTKFK----GTV 156
           L V K  +    L ++  G + +      K   ++  S   L T+ +     +      +
Sbjct: 149 LAVNKKAKNAPPLRSIICGRNRL-ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207

Query: 157 VNQKLHNFTNLEELILDESDLH---VSQLLQSIASFTSLKHLSMQDCVL--KGALHGQDF 211
           + + L     L+ L L ++       S L  ++ S+ +L+ L + DC+L  +GA    D 
Sbjct: 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267

Query: 212 LK---FKNLEYLDMGWVQVDVN--TNFLQIVGESMPSLNFLSLTN 251
                   L+ L + + +++++       ++ E MP L FL L  
Sbjct: 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 59.3 bits (144), Expect = 3e-09
 Identities = 44/286 (15%), Positives = 91/286 (31%), Gaps = 62/286 (21%)

Query: 539 LERLDISNNQLTGEIPERMATG---CFSLEILALSNNRL--QG--HIFSEKFNLTNLMTL 591
           +E   +  + +T E  + +        S++ + LS N +  +    +     +  +L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 592 QLDGNNFIGEIP-----------ESLSKCYMLRGLYLSDNHLFGK----IPRWLGNLPTL 636
           +   + F G +            ++L KC  L  + LSDN         +  +L     L
Sbjct: 66  EF-SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 637 QYIIMPNNNL-------------EGPIPIEFCQRDSLKILDLSNNSIF--------GTLP 675
           +++ + NN L             E  +  +      L+ +    N +          T  
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184

Query: 676 SCFSPASIEQVHLSKNKI-----EGRLESIIHDNPHLVTLDLSYNSLHG----SIPNRID 726
           S      +  V + +N I     E  L   +     L  LDL  N+       ++   + 
Sbjct: 185 SH---RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241

Query: 727 RLPQLNYLLLAHNYIKGEIPVQLCQ-LKEV-----RLIDLSHNNLS 766
             P L  L L    +       +     ++     + + L +N + 
Sbjct: 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 41/254 (16%), Positives = 83/254 (32%), Gaps = 41/254 (16%)

Query: 163 NFTNLEELILDE---SDLHVSQLLQSIASFTSLKHLSMQDC--------VLKGALHGQDF 211
            F+ +E   L     +      +   +    S+K + +            L   +  +  
Sbjct: 3   RFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 61

Query: 212 LKFKNLEYLDMGWVQVDVNTNFLQIVG--ESMPSLNFLSLTNSSLNKHTI--LDQGLCQL 267
           L+      +  G V+ ++      ++      P L+ + L++++        L   L + 
Sbjct: 62  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 121

Query: 268 VHLQGLYIRDNDLRD--------GLPWC-----LANMTSLQVLYASSNQLTGN----ISP 310
             L+ LY+ +N L           L          N   L+ +    N+L        + 
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181

Query: 311 GLCELVLLRKLYIDNNDLR---GSLPLC--LANLTSLRVLDVSYNQLTEN---ISSSSLM 362
                 LL  + +  N +R       L   LA    L+VLD+  N  T       + +L 
Sbjct: 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241

Query: 363 HLTSIEELILSNNH 376
              ++ EL L++  
Sbjct: 242 SWPNLRELGLNDCL 255

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 67/374 (17%), Positives = 108/374 (28%), Gaps = 98/374 (26%)

Query: 336 LANLTSLRVLDVSYNQLTEN---ISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSK 392
           +A   S+    +  + +T        + L+   S++E++LS N                 
Sbjct: 1   MARF-SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI--------------- 44

Query: 393 LQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDL-----NSVNLS 447
                G   A+  S  +++  K  L     S    G    E       L         L 
Sbjct: 45  -----GTEAARWLS--ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 97

Query: 448 HLNLSGEFPNWL-----------LENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVF 496
            + LS    N             L  +T LE L L NN L G       +  K+A     
Sbjct: 98  TVRLSD---NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-G-----PQAGAKIARA--- 145

Query: 497 NNFFQGHIPVEIGTYLPGLMELNLSRNAFNG----SIPSSFADMKMLERLDISNNQLTGE 552
               Q     +     P L  +   RN            +F   ++L  + +  N +  E
Sbjct: 146 ---LQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 202

Query: 553 IPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNF----IGEIPESLSK 608
                  G   L +  L+                 L  L L  N F       +  +L  
Sbjct: 203 -------GIEHLLLEGLAYC-------------QELKVLDLQDNTFTHLGSSALAIALKS 242

Query: 609 CYMLRGLYLSDNHL-------FGKIPRWLGNLPTLQYIIMPNNNL--EGPIPIEFCQRD- 658
              LR L L+D  L              L N   LQ + +  N +  +    ++    + 
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLEN-IGLQTLRLQYNEIELDAVRTLKTVIDEK 301

Query: 659 --SLKILDLSNNSI 670
              L  L+L+ N  
Sbjct: 302 MPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 56.3 bits (136), Expect = 3e-08
 Identities = 45/187 (24%), Positives = 69/187 (36%), Gaps = 38/187 (20%)

Query: 3   ASLFTPFQQLESLDLSWNNI--AGCVQNESLERLSRLTNLKFLYLNDNHFNN----SIFS 56
           A  F   + L ++ +  N I   G       E L+    LK L L DN F +    ++  
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLL-EGLAYCQELKVLDLQDNTFTHLGSSALAI 238

Query: 57  SLGGLSSLRHLSLADNRL--NGSIDI-KGLNSLSN--LEELDMTGNAIENLVVPKDFRGL 111
           +L    +LR L L D  L   G+  +    + L N  L+ L +  N IE          +
Sbjct: 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL-------DAV 291

Query: 112 RKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKF--KGTVVNQKLHNFTNLEE 169
           R L                 V+     +P L  L L+  +F  +  VV++    F+    
Sbjct: 292 RTL---------------KTVIDE--KMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGR 334

Query: 170 LILDESD 176
             LDE D
Sbjct: 335 GELDELD 341

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 56.3 bits (136), Expect = 3e-08
 Identities = 46/347 (13%), Positives = 92/347 (26%), Gaps = 79/347 (22%)

Query: 270 LQGLYIRDNDLRD----GLPWCLANMTSLQVLYASSNQLTGN----ISPGLCELVLLRKL 321
           ++G  ++ + +       +   L    S++ +  S N +       +S  +     L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 322 YIDNNDL--------RGSLPLC--LANLTSLRVLDVSYNQLTENIS---SSSLMHLTSIE 368
              +                L   L     L  + +S N             L   T +E
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 369 ELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDG 428
            L L NN                      G                       ++  +  
Sbjct: 126 HLYLHNNGL--------------------GPQAGA-----------------KIARALQE 148

Query: 429 GTFPEFLYHQHDLNSVNLSHLNLSGEFPNWL---LENNTNLETLLLANNSLF-----GSF 480
               +   +   L S+      L            +++  L T+ +  N +         
Sbjct: 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 208

Query: 481 RMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPG---LMELNLSRNAFNGSIPSSFADM- 536
              +   Q+L  LD+ +N F       +   L     L EL L+    +    ++  D  
Sbjct: 209 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268

Query: 537 -----KMLERLDISNNQLTGE----IPERMATGCFSLEILALSNNRL 574
                  L+ L +  N++  +    +   +      L  L L+ NR 
Sbjct: 269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 58/391 (14%), Positives = 115/391 (29%), Gaps = 106/391 (27%)

Query: 288 LANMTSLQVLYASSNQLTG----NISPGLCELVLLRKLYIDNNDL--RGSLPLC--LANL 339
           +A   S++      + +T     ++   L E   ++++ +  N +    +  L   +A+ 
Sbjct: 1   MAR-FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 340 TSLRVLDVSYNQLTENIS---------SSSLMHLTSIEELILSNNHFFQIPISLEPLFNL 390
             L + + S                    +L+    +  + LS+N F             
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF------------- 106

Query: 391 SKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLN 450
                                            G        +FL     L  + L +  
Sbjct: 107 ---------------------------------GPTAQEPLIDFLSKHTPLEHLYLHNNG 133

Query: 451 LSGE------------FPNWLLENNTNLETLLLANNSLFGSFRMP-----IHSHQKLATL 493
           L  +              N   +N   L +++   N L  +  M        SH+ L T+
Sbjct: 134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL-ENGSMKEWAKTFQSHRLLHTV 192

Query: 494 DVFNNFFQGH-IPVEIGTYL---PGLMELNLSRNAFNG----SIPSSFADMKMLERLDIS 545
            +  N  +   I   +   L     L  L+L  N F      ++  +      L  L ++
Sbjct: 193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252

Query: 546 NNQLTGE----IPERMATGCF-SLEILALSNNRLQ---GHIFSE--KFNLTNLMTLQLDG 595
           +  L+      + +  +      L+ L L  N ++              + +L+ L+L+G
Sbjct: 253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312

Query: 596 NNF------IGEIPESLSKCYMLRGLYLSDN 620
           N F      + EI E  S         L D 
Sbjct: 313 NRFSEEDDVVDEIREVFSTRGRGELDELDDM 343

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 51.3 bits (123), Expect = 1e-06
 Identities = 39/256 (15%), Positives = 76/256 (29%), Gaps = 53/256 (20%)

Query: 562 FSLEILALSNNRLQG----HIFSEKFNLTNLMTLQLDGNNFIGE-----IPESLSKCYML 612
           FS+E  +L  + +       +F+      ++  + L GN  IG      + E+++    L
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDL 62

Query: 613 RGLYLSDNHL----------FGKIPRWLGNLPTLQYIIMPNNNL--EGPIPIEFCQRD-- 658
                SD                + + L   P L  + + +N        P+        
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122

Query: 659 SLKILDLSNNSI--------FGTLPSCFSPA------SIEQVHLSKNKIEGR----LESI 700
            L+ L L NN +           L              +  +   +N++E          
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182

Query: 701 IHDNPHLVTLDLSYNSLH-----GSIPNRIDRLPQLNYLLLAHNYIKGEIPVQ-----LC 750
              +  L T+ +  N +        +   +    +L  L L  N     +        L 
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF-THLGSSALAIALK 241

Query: 751 QLKEVRLIDLSHNNLS 766
               +R + L+   LS
Sbjct: 242 SWPNLRELGLNDCLLS 257

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 71.5 bits (175), Expect = 8e-13
 Identities = 63/400 (15%), Positives = 120/400 (30%), Gaps = 62/400 (15%)

Query: 3   ASLFTPFQQLESLDLSWNNIAGCVQNESLERL-SRLTNLKFLYLNDNHFNNSIFSSLGGL 61
           +     +  L SL++S   +A  V   +LERL +R  NLK L LN       + + L   
Sbjct: 177 SHFPDTYTSLVSLNISC--LASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRA 234

Query: 62  SSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGG 121
             L  L          +     + LS                      G ++L  L    
Sbjct: 235 PQLEELGT--GGYTAEVRPDVYSGLSVA------------------LSGCKELRCL---- 270

Query: 122 SGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDE--SDLHV 179
           SG      + +         L TL LS+   +   + + L     L+ L + +   D  +
Sbjct: 271 SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGL 330

Query: 180 SQLLQSIASFTSLKHLSMQDCVLKGALHGQDF---------LKFKNLEYLDMGWVQVDVN 230
             L     +   L+ L +                       +    LE +     Q+   
Sbjct: 331 EVLAS---TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNA 387

Query: 231 TNFLQIVGESMPSLNFLSLTNSSLNKHT-----ILDQGLCQLVH----LQGLYIRDNDLR 281
              L  +  + P++    L               LD G   +V     L+ L +      
Sbjct: 388 A--LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTD 445

Query: 282 DGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVL----LRKLYIDNNDL--RGSLPLC 335
               +       +++L  +    +     G+  ++     LRKL I +     +  L   
Sbjct: 446 KVFEYIGTYAKKMEMLSVAFAGDSDL---GMHHVLSGCDSLRKLEIRDCPFGDKALLAN- 501

Query: 336 LANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNN 375
            + L ++R L +S   ++          +  +   ++   
Sbjct: 502 ASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 69.5 bits (170), Expect = 3e-12
 Identities = 74/512 (14%), Positives = 151/512 (29%), Gaps = 68/512 (13%)

Query: 1   MNASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLND-NHFNNSIFSSLG 59
             A++   F ++ S++L      G              +   +      +    I +   
Sbjct: 57  SPATVIRRFPKVRSVELK-----GK---------PHFADFNLVPDGWGGYVYPWIEAMSS 102

Query: 60  GLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTG-NAIENLVVPKDFRGLRKLNTLY 118
             + L  + L    +          S  N + L ++         +       R L  L 
Sbjct: 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELD 162

Query: 119 LGGSGIPRIDGSKVLQSIGSLPSLKTLYLS--HTKFKGTVVNQKLHNFTNLEELILDESD 176
           L  S +  + G  +     +  SL +L +S   ++   + + + +    NL+ L L+ + 
Sbjct: 163 LRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA- 221

Query: 177 LHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFL-----KFKNLEYLDMGWVQVDVNT 231
           + + +L   +     L+ L       +        L       K L  L   W   D   
Sbjct: 222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFW---DAVP 278

Query: 232 NFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLV----HLQGLYIRDNDLRDGLPWC 287
            +L  V      L  L+L+ +     T+    L +L+     LQ L++ D     GL   
Sbjct: 279 AYLPAVYSVCSRLTTLNLSYA-----TVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVL 333

Query: 288 LANMTSLQVLY-ASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLD 346
            +    L+ L    S       +  L E                 L         L  + 
Sbjct: 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQ---------------GLVSVSMGCPKLESVL 378

Query: 347 VSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTES 406
               Q+T     +   +  ++    L         I  +    L+      G   A  E 
Sbjct: 379 YFCRQMTNAALITIARNRPNMTRFRLCI-------IEPKAPDYLTLEPLDIG-FGAIVEH 430

Query: 407 HYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNL 466
                     L  +SLSG +    F     +   +  ++++    S    + +L    +L
Sbjct: 431 CK-------DLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSL 483

Query: 467 ETLLLANNSLFG-SFRMPIHSHQKLATLDVFN 497
             L + +      +        + + +L + +
Sbjct: 484 RKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 65.7 bits (160), Expect = 5e-11
 Identities = 56/374 (14%), Positives = 111/374 (29%), Gaps = 30/374 (8%)

Query: 3   ASLFTPFQQLESLDLS--WNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGG 60
           A+L     QLE L        +   V +     LS    L+ L    +     + +    
Sbjct: 228 ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287

Query: 61  LSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLG 120
            S L  L+L+   +     +K L     L+ L +  + IE+  +       + L  L + 
Sbjct: 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL-DYIEDAGLEVLASTCKDLRELRVF 346

Query: 121 GSGIPRIDGSKVLQSIG------SLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDE 174
            S    ++ +  L   G        P L+++     +     +     N  N+    L  
Sbjct: 347 PSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCI 406

Query: 175 SDLHVSQL---------LQSIAS-FTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGW 224
            +                 +I      L+ LS+   +             K +E L + +
Sbjct: 407 IEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFE-YIGTYAKKMEMLSVAF 465

Query: 225 VQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDL-RDG 283
                    +  V     SL  L + +       +L     +L  ++ L++    +    
Sbjct: 466 AGDSDLG--MHHVLSGCDSLRKLEIRDCPFGDKALL-ANASKLETMRSLWMSSCSVSFGA 522

Query: 284 LPWCLANMTSLQVLYASSNQLTGN--ISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTS 341
                  M  L V          +   S  +  + + R +       R  +P  + N+  
Sbjct: 523 CKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVFIYRTV----AGPRFDMPGFVWNMDQ 578

Query: 342 LRVLDVSYNQLTEN 355
              +  S   +T N
Sbjct: 579 DSTMRFSRQIITTN 592

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 47.6 bits (113), Expect = 2e-05
 Identities = 67/506 (13%), Positives = 149/506 (29%), Gaps = 58/506 (11%)

Query: 335 CLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIP-ISLEPLF-NLSK 392
              +     ++   +         +     T +EE+ L       +    LE +  +   
Sbjct: 75  GKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKR---MVVTDDCLELIAKSFKN 131

Query: 393 LQTFN-GEINAQTESHYDSLTPKF-QLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLN 450
            +          +     ++      L  + L           +L H  D    +L  LN
Sbjct: 132 FKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD-TYTSLVSLN 190

Query: 451 LSGEFPNW-------LLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDV--FNNFFQ 501
           +S             L+    NL++L L            +    +L  L    +    +
Sbjct: 191 ISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVR 250

Query: 502 GHIPVEIGTYLPG---LMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMA 558
             +   +   L G   L  L+   +A    +P+ ++    L  L++S   +      ++ 
Sbjct: 251 PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLL 310

Query: 559 TGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPES----------LSK 608
             C  L+ L + +      +        +L  L++  +      P               
Sbjct: 311 CQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG 370

Query: 609 CYMLRGLYLSDNHL----FGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILD 664
           C  L  +      +       I R   N P +    +     +           +L+ LD
Sbjct: 371 CPKLESVLYFCRQMTNAALITIAR---NRPNMTRFRLCIIEPKA------PDYLTLEPLD 421

Query: 665 LSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHG-SIPN 723
           +   +I            + ++ LS    +   E I      +  L +++       + +
Sbjct: 422 IGFGAIVEHCK------DLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHH 475

Query: 724 RIDRLPQLNYLLLAH-NYIKGEIPVQLCQLKEVRLIDLSHNNLS-------GRIPPCLVN 775
            +     L  L +    +    +     +L+ +R + +S  ++S       G+  P L  
Sbjct: 476 VLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNV 535

Query: 776 TSLNEGYHGEVAPTSIWCRRASVYRS 801
             ++E    +  P S    R  +YR+
Sbjct: 536 EVIDERGAPDSRPESCPVERVFIYRT 561

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 71.1 bits (174), Expect = 1e-12
 Identities = 79/600 (13%), Positives = 167/600 (27%), Gaps = 85/600 (14%)

Query: 53  SIFSSLGGLSSLRHLSL-------ADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVP 105
            + + +         SL        D+     + +    + +  + L      + +L   
Sbjct: 23  QVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTAT-PDRLSRRFPNLRSL--- 78

Query: 106 KDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFK-GTVVNQKLHNF 164
              +G  +     L            V +   +L  LK+++          +        
Sbjct: 79  -KLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARA 137

Query: 165 TNLEELILDESDLHVSQLLQSIASF-TSLKHLSMQDCVL--KGALHGQDFLK-FKNLEYL 220
            +LE L LD+     +  L SI +    +K L M++     K      +  +   +LE L
Sbjct: 138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVL 197

Query: 221 DMGWVQV-DVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDND 279
           +    +   ++   L+ +  +  SL  + + +              +++ L G +    +
Sbjct: 198 NFYMTEFAKISPKDLETIARNCRSLVSVKVGD-------------FEILELVGFFKAAAN 244

Query: 280 LRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANL 339
           L +     L     +   Y +             +L  L   Y+  N++    P      
Sbjct: 245 LEEFCGGSLNEDIGMPEKYMNL--------VFPRKLCRLGLSYMGPNEMPILFPFA---- 292

Query: 340 TSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLS----KLQT 395
             +R LD+ Y  L      + +    ++E L   N       I    L  L+    +L+ 
Sbjct: 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV------IGDRGLEVLAQYCKQLKR 346

Query: 396 FNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEF 455
              E  A  +   D       ++   L                 +L  + +   +++ E 
Sbjct: 347 LRIERGADEQGMEDEEG---LVSQRGLI---------ALAQGCQELEYMAVYVSDITNES 394

Query: 456 PNWLLENNTNLETLLLAN---------NSLFGSFRMPIHSHQKLATLDVFNNFFQ--GHI 504
              +     NL    L             L    R  +   +KL     +          
Sbjct: 395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454

Query: 505 PVEIGTYLPGLMELNLSRNAF-NGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFS 563
              IG Y P +  + L      +  +         L++L++     +        T   S
Sbjct: 455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPS 514

Query: 564 LEILALSNNRLQ---GHIFSEKFNLTNLMTLQLDGNNFIG-----EIPESLSKCYMLRGL 615
           L  L +   R       +        N+  +       +         E  +       L
Sbjct: 515 LRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILAYYSL 574

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 65.7 bits (160), Expect = 4e-11
 Identities = 70/503 (13%), Positives = 137/503 (27%), Gaps = 67/503 (13%)

Query: 1   MNASLFTPFQQLESLDLSW----------NNIAGCVQNESLERLSR-LTNLKFLYLNDNH 49
               L   F  L SL L                G      +  +S  L  LK ++     
Sbjct: 64  TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI 123

Query: 50  FNNSIFSSL--GGLSSLRHLSLADNRLNGSIDIKGL-NSLSNLEELDMTGNAIENLVVP- 105
            ++     L       L  L L       +  +  +      ++ L M  ++        
Sbjct: 124 VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW 183

Query: 106 --KDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKF-KGTVVNQKLH 162
             +  +    L  L    +   +I    +     +  SL ++ +   +  +     +   
Sbjct: 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA 243

Query: 163 NFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDM 222
           N        L+  D+ + +   ++     L  L +             F     +  LD+
Sbjct: 244 NLEEFCGGSLN-EDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA--AQIRKLDL 300

Query: 223 GWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLV----HLQGLYIRDN 278
            +    + T     + +  P+L  L   N       I D+GL  L      L+ L I   
Sbjct: 301 LYAL--LETEDHCTLIQKCPNLEVLETRN------VIGDRGLEVLAQYCKQLKRLRIERG 352

Query: 279 DLRDGLPWCLANMT------------SLQVLYASSNQLTGN----ISPGLCELVLLRKLY 322
               G+      ++             L+ +    + +T      I   L  L   R + 
Sbjct: 353 ADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVL 412

Query: 323 IDNNDLRGSLPLC------LANLTSLRVLDVSYNQLTENISSSSLMHLTS----IEELIL 372
           +D  +    LPL       L     LR       Q    ++   L ++      +  ++L
Sbjct: 413 LDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ--GGLTDLGLSYIGQYSPNVRWMLL 470

Query: 373 SNNHFFQIPISLEPLF-NLSKLQTFNGEINAQTESHYDSLTPKF-QLTSISLSGYVDGGT 430
                 +    L         LQ         +E    +   K   L  + + GY    T
Sbjct: 471 GYVG--ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528

Query: 431 FPEFLYHQHDLNSVNLSHLNLSG 453
             + +         N+  +    
Sbjct: 529 GQDLMQMA--RPYWNIELIPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 48/315 (15%), Positives = 92/315 (29%), Gaps = 47/315 (14%)

Query: 439 HDLNSVNLSHLNLS---GEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDV 495
             ++S    H+ ++      P+ L     NL +L L        F +   +     T  V
Sbjct: 45  FKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWV 104

Query: 496 FNNFFQGHIPVEIGTYLPGLMELNLSRNAF--NGSIPSSFADMKMLERLDISN-NQLTGE 552
                      EI   L  L  ++  R           + A    LE L +   +  T +
Sbjct: 105 ----------TEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTD 154

Query: 553 IPERMATGCFSLEILALSNNRL--QGHIFSEKF--NLTNLMTLQLDGNNFIGEIPESL-- 606
               + T C  ++ L +  +    +   +  +   + T+L  L      F    P+ L  
Sbjct: 155 GLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET 214

Query: 607 --SKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILD 664
               C  L  + + D  +  ++  +      L+     + N +  +P ++      + L 
Sbjct: 215 IARNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC 273

Query: 665 LSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHG-SIPN 723
               S  G                        +  +      +  LDL Y  L       
Sbjct: 274 RLGLSYMG---------------------PNEMPILFPFAAQIRKLDLLYALLETEDHCT 312

Query: 724 RIDRLPQLNYLLLAH 738
            I + P L  L   +
Sbjct: 313 LIQKCPNLEVLETRN 327

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 63.2 bits (154), Expect = 7e-12
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 6/98 (6%)

Query: 5   LFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSL 64
           L   F++LE L      +       S+  L +L  LK L L+DN  +  +        +L
Sbjct: 37  LTDEFEELEFLSTINVGL------TSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90

Query: 65  RHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENL 102
            HL+L+ N++     I+ L  L NL+ LD+    + NL
Sbjct: 91  THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 7/137 (5%)

Query: 9   FQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLS 68
              ++ L L  +      + +          L+FL   +     +  ++L  L+ L+ L 
Sbjct: 16  PSDVKELVLDNS---RSNEGKLEGLTDEFEELEFLSTINVGL--TSIANLPKLNKLKKLE 70

Query: 69  LADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRID 128
           L+DNR++            NL  L+++GN I++L   +  + L  L +L L    +  ++
Sbjct: 71  LSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

Query: 129 GSKVLQSIGSLPSLKTL 145
             +       LP L  L
Sbjct: 130 DYR-ENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 7/114 (6%)

Query: 61  LSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLG 120
            S ++ L L ++R N        +    LE L      + ++    +   L KL  L L 
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELS 72

Query: 121 GSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDE 174
            + +               P+L  L LS  K K     + L    NL+ L L  
Sbjct: 73  DNRVSGGLEV----LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 9/142 (6%)

Query: 82  GLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPS 141
              + S+++EL +  +      +        +L  L     G+  I        +  L  
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN------LPKLNK 65

Query: 142 LKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCV 201
           LK L LS  +     +        NL  L L  + +     ++ +    +LK L + +C 
Sbjct: 66  LKKLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124

Query: 202 LKGALHGQDFL--KFKNLEYLD 221
           +      ++ +      L YLD
Sbjct: 125 VTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 8e-07
 Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 3/89 (3%)

Query: 679 SPASIEQVHLSKNKI-EGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLA 737
           +P+ ++++ L  ++  EG+LE +  +   L  L      L  SI N + +L +L  L L+
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72

Query: 738 HNYIKGEIPVQLCQLKEVRLIDLSHNNLS 766
            N + G + V   +   +  ++LS N + 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 287 CLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLD 346
                  L+ L   +  LT +I+  L +L  L+KL + +N + G L +      +L  L+
Sbjct: 37  LTDEFEELEFLSTINVGLT-SIA-NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94

Query: 347 VSYNQLTENISSSSLMHLTSIEELILSNN 375
           +S N++ +  +   L  L +++ L L N 
Sbjct: 95  LSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 517 ELNLSRNAFN-GSIPSSFADMKMLERLDISNNQLT--GEIPERMATGCFSLEILALSNNR 573
           EL L  +  N G +     + + LE L   N  LT    +P+        L+ L LS+NR
Sbjct: 21  ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPK-----LNKLKKLELSDNR 75

Query: 574 LQGHIFSEKFNLTNLMTLQLDGNNFIGEIPE--SLSKCYMLRGLYLSDN 620
           + G +        NL  L L   N I ++     L K   L+ L L + 
Sbjct: 76  VSGGLEVLAEKCPNLTHLNL-SGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 14/137 (10%)

Query: 536 MKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQ-GHIFSEKFNLTNLMTLQLD 594
           M+M  R+   + +L    P         ++ L L N+R   G +         L  L   
Sbjct: 1   MEMGRRI---HLELRNRTPS-------DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTI 50

Query: 595 GNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEF 654
               +  I  +L K   L+ L LSDN + G +       P L ++ +  N ++    IE 
Sbjct: 51  NVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP 108

Query: 655 CQR-DSLKILDLSNNSI 670
            ++ ++LK LDL N  +
Sbjct: 109 LKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 29/120 (24%), Positives = 42/120 (35%), Gaps = 22/120 (18%)

Query: 238 GESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVL 297
            +    L FLS  N      T +   L +L  L+ L + DN +  GL        +L  L
Sbjct: 38  TDEFEELEFLSTIN---VGLTSIA-NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93

Query: 298 YASSNQLT--GNISPGLCELVLLRKLYIDNNDLRGSLPLC---------LANLTSLRVLD 346
             S N++     I P L +L  L+ L + N        +             L  L  LD
Sbjct: 94  NLSGNKIKDLSTIEP-LKKLENLKSLDLFNC------EVTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 25/116 (21%), Positives = 56/116 (48%), Gaps = 7/116 (6%)

Query: 163 NFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDM 222
             ++++EL+LD S  +  +L      F  L+ LS  +  L       +  K   L+ L++
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLEL 71

Query: 223 GWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDN 278
              +V   +  L+++ E  P+L  L+L+ + +   + ++  L +L +L+ L + + 
Sbjct: 72  SDNRV---SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP-LKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 23/122 (18%), Positives = 44/122 (36%), Gaps = 26/122 (21%)

Query: 643 NNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIH 702
           + + EG +     + + L+ L   N  +                      I       + 
Sbjct: 27  SRSNEGKLEGLTDEFEELEFLSTINVGL--------------------TSIAN-----LP 61

Query: 703 DNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKG-EIPVQLCQLKEVRLIDLS 761
               L  L+LS N + G +    ++ P L +L L+ N IK       L +L+ ++ +DL 
Sbjct: 62  KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121

Query: 762 HN 763
           + 
Sbjct: 122 NC 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 63.6 bits (155), Expect = 1e-11
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 6/98 (6%)

Query: 5   LFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSL 64
           L   F  LE L L    +       S+  L +L  LK L L++N     +      L +L
Sbjct: 44  LTAEFVNLEFLSLINVGL------ISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 65  RHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENL 102
            HL+L+ N+L     ++ L  L  L+ LD+    + NL
Sbjct: 98  THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 60.9 bits (148), Expect = 8e-11
 Identities = 29/137 (21%), Positives = 53/137 (38%), Gaps = 7/137 (5%)

Query: 9   FQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLS 68
              +  L L           +     +   NL+FL L +        S+L  L  L+ L 
Sbjct: 23  PAAVRELVLDNC---KSNDGKIEGLTAEFVNLEFLSLINVGL--ISVSNLPKLPKLKKLE 77

Query: 69  LADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRID 128
           L++NR+           L NL  L+++GN ++++   +  + L  L +L L    +  ++
Sbjct: 78  LSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136

Query: 129 GSKVLQSIGSLPSLKTL 145
             +       LP L  L
Sbjct: 137 DYR-ESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 14/142 (9%)

Query: 531 SSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQ-GHIFSEKFNLTNLM 589
           S  + M M  R+   + +L    P        ++  L L N +   G I        NL 
Sbjct: 3   SGSSGMDMKRRI---HLELRNRTPA-------AVRELVLDNCKSNDGKIEGLTAEFVNLE 52

Query: 590 TLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGP 649
            L L     +  +  +L K   L+ L LS+N +FG +      LP L ++ +  N L+  
Sbjct: 53  FLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110

Query: 650 IPIEFCQR-DSLKILDLSNNSI 670
             +E  ++ + LK LDL N  +
Sbjct: 111 STLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 9/114 (7%)

Query: 511 YLPGLMELNLSRNAFN-GSIPSSFADMKMLERLDISNNQLTG-EIPERMATGCFSLEILA 568
               + EL L     N G I    A+   LE L + N  L       ++      L+ L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLP----KLKKLE 77

Query: 569 LSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPE--SLSKCYMLRGLYLSDN 620
           LS NR+ G +      L NL  L L   N + +I     L K   L+ L L + 
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNL-SGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 679 SPASIEQVHLSKNKI-EGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLA 737
           +PA++ ++ L   K  +G++E +  +  +L  L L    L  S+ N + +LP+L  L L+
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELS 79

Query: 738 HNYIKGEIPVQLCQLKEVRLIDLSHNNLS 766
            N I G + +   +L  +  ++LS N L 
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 13/124 (10%)

Query: 288 LANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDV 347
            A   +L+ L   +  L  ++S  L +L  L+KL +  N + G L +    L +L  L++
Sbjct: 45  TAEFVNLEFLSLINVGLI-SVS-NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102

Query: 348 SYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEP------LFNLSKLQTFNGEIN 401
           S N+L +  +   L  L  ++ L L N       ++            L +L   +G   
Sbjct: 103 SGNKLKDISTLEPLKKLECLKSLDLFNC-----EVTNLNDYRESVFKLLPQLTYLDGYDR 157

Query: 402 AQTE 405
              E
Sbjct: 158 EDQE 161

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 9/139 (6%)

Query: 85  SLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKT 144
           + + + EL +      +  +         L  L L   G+  +        +  LP LK 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN------LPKLPKLKK 75

Query: 145 LYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKG 204
           L LS  +     ++       NL  L L  + L     L+ +     LK L + +C +  
Sbjct: 76  LELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN 134

Query: 205 ALHGQDFL--KFKNLEYLD 221
               ++ +      L YLD
Sbjct: 135 LNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.3 bits (110), Expect = 7e-06
 Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 10/114 (8%)

Query: 238 GESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVL 297
                +L FLSL N  L   +     L +L  L+ L + +N +  GL      + +L  L
Sbjct: 45  TAEFVNLEFLSLINVGLISVS----NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100

Query: 298 YASSNQLT--GNISPGLCELVLLRKLYIDNN---DLRGSLPLCLANLTSLRVLD 346
             S N+L     + P L +L  L+ L + N    +L          L  L  LD
Sbjct: 101 NLSGNKLKDISTLEP-LKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 29/138 (21%), Positives = 59/138 (42%), Gaps = 10/138 (7%)

Query: 163 NFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDM 222
               + EL+LD    +  ++    A F +L+ LS+ +  L       +  K   L+ L++
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLEL 78

Query: 223 GWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDN---D 279
              ++      L ++ E +P+L  L+L+ + L   + L+  L +L  L+ L + +    +
Sbjct: 79  SENRI---FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP-LKKLECLKSLDLFNCEVTN 134

Query: 280 LRDGLPWCLANMTSLQVL 297
           L D        +  L  L
Sbjct: 135 LNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 22/103 (21%), Positives = 47/103 (45%), Gaps = 3/103 (2%)

Query: 662 ILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSI 721
           +LD   ++            ++E + L    +   +   +   P L  L+LS N + G +
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVS-NLPKLPKLKKLELSENRIFGGL 87

Query: 722 PNRIDRLPQLNYLLLAHNYIKGEIPVQ-LCQLKEVRLIDLSHN 763
               ++LP L +L L+ N +K    ++ L +L+ ++ +DL + 
Sbjct: 88  DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 6/98 (6%)

Query: 5   LFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSL 64
           L     Q +++D S N I        L+    L  LK L +N+N            L  L
Sbjct: 37  LGATLDQFDAIDFSDNEI------RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90

Query: 65  RHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENL 102
             L L +N L    D+  L SL +L  L +  N + N 
Sbjct: 91  TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 128

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 62.0 bits (151), Expect = 3e-11
 Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 11/136 (8%)

Query: 11  QLESLDLSWNNIAGCVQNESLERL-SRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSL 69
           +   LDL    I        +E L + L     +  +DN            L  L+ L +
Sbjct: 20  RDRELDLRGYKI------PVIENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLKTLLV 71

Query: 70  ADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDG 129
            +NR+   I      +L +L EL +T N++  L        L+ L  L +  + +     
Sbjct: 72  NNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 130

Query: 130 SKVLQSIGSLPSLKTL 145
            + L  I  +P ++ L
Sbjct: 131 YR-LYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 58.9 bits (143), Expect = 5e-10
 Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 11/120 (9%)

Query: 56  SSLGGLSSLRHLSLADNRLNGSIDIKGLNS-LSNLEELDMTGNAIENLVVPKDFRGLRKL 114
           +        R L L   ++     I+ L + L   + +D + N I  L     F  LR+L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP---VIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRL 66

Query: 115 NTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDE 174
            TL +  + I RI          +LP L  L L++           L +  +L  L +  
Sbjct: 67  KTLLVNNNRICRIGEG----LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 58.1 bits (141), Expect = 7e-10
 Identities = 32/148 (21%), Positives = 56/148 (37%), Gaps = 17/148 (11%)

Query: 79  DIKGLNSLSNLEELDMTGN---AIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQS 135
                 +     ELD+ G     IENL        L + + +    + I ++DG      
Sbjct: 11  QAAQYTNAVRDRELDLRGYKIPVIENL-----GATLDQFDAIDFSDNEIRKLDG------ 59

Query: 136 IGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHL 195
              L  LKTL +++ +    +         +L ELIL  + L     L  +AS  SL +L
Sbjct: 60  FPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 118

Query: 196 SMQDCVLKGALHGQDFLKF--KNLEYLD 221
            +    +    H + ++ +    +  LD
Sbjct: 119 CILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 14/135 (10%)

Query: 15  LDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRL 74
           + L+   I      E   + +     + L L        I +    L     +  +DN +
Sbjct: 2   VKLTAELI------EQAAQYTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEI 54

Query: 75  NGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQ 134
                + G   L  L+ L +  N I  +      + L  L  L L  + +  +     L 
Sbjct: 55  R---KLDGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELILTNNSLVEL---GDLD 107

Query: 135 SIGSLPSLKTLYLSH 149
            + SL SL  L +  
Sbjct: 108 PLASLKSLTYLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 4/105 (3%)

Query: 662 ILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSI 721
           ++ L+   I        +     ++ L   KI   +E++         +D S N +   +
Sbjct: 1   MVKLTAELI-EQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL 57

Query: 722 PNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 766
                 L +L  LL+ +N I          L ++  + L++N+L 
Sbjct: 58  DG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 25/150 (16%), Positives = 53/150 (35%), Gaps = 14/150 (9%)

Query: 262 QGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKL 321
                 V  + L +R   +   +    A +     +  S N++   +  G   L  L+ L
Sbjct: 13  AQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTL 69

Query: 322 YIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIP 381
            ++NN +          L  L  L ++ N L E      L  L S+  L +  N     P
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN-----P 124

Query: 382 ISLEP------LFNLSKLQTFNGEINAQTE 405
           ++ +       ++ + +++  + +     E
Sbjct: 125 VTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 28/155 (18%), Positives = 49/155 (31%), Gaps = 30/155 (19%)

Query: 584 NLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPN 643
           N      L L G   I  I    +       +  SDN +  K+      L  L+ +++ N
Sbjct: 17  NAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEI-RKLDG-FPLLRRLKTLLVNN 73

Query: 644 NNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHD 703
           N +             L  L L+NNS+            +  +              +  
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSL----------VELGDL------------DPLAS 111

Query: 704 NPHLVTLDLSYNSLHGSIPN-R---IDRLPQLNYL 734
              L  L +  N +  +  + R   I ++PQ+  L
Sbjct: 112 LKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 11/113 (9%)

Query: 512 LPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLT--GEIPERMATGCFSLEILAL 569
                EL+L        I +  A +   + +D S+N++      P         L+ L +
Sbjct: 18  AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP-----LLRRLKTLLV 71

Query: 570 SNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPE--SLSKCYMLRGLYLSDN 620
           +NNR+          L +L  L L  NN + E+ +   L+    L  L +  N
Sbjct: 72  NNNRICRIGEGLDQALPDLTELIL-TNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 14/127 (11%)

Query: 304 LTGNI---SPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLT--ENISS 358
           LT  +   +      V  R+L +    +   +    A L     +D S N++   +    
Sbjct: 4   LTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP- 61

Query: 359 SSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINA-QTESHYDSLTPKFQL 417
                L  ++ L+++NN   +I   L+    L  L       N+       D L     L
Sbjct: 62  ----LLRRLKTLLVNNNRICRIGEGLDQ--ALPDLTELILTNNSLVELGDLDPLASLKSL 115

Query: 418 TSISLSG 424
           T + +  
Sbjct: 116 TYLCILR 122

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 64.6 bits (158), Expect = 3e-11
 Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 23/177 (12%)

Query: 3   ASLFTPFQQLESLDLSWNNIAGCVQNESLER--LSRLTNLKFLYLNDNHFN---NSIFSS 57
           +  F    +L  L L+ N +      ++L       L NL+ L++ DN        +F  
Sbjct: 54  SKAFHRLTKLRLLYLNDNKL------QTLPAGIFKELKNLETLWVTDNKLQALPIGVFD- 106

Query: 58  LGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKD-FRGLRKLNT 116
              L +L  L L  N+L  S+  +  +SL+ L  L +  N +++L  PK  F  L  L  
Sbjct: 107 --QLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSL--PKGVFDKLTSLKE 161

Query: 117 LYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILD 173
           L L  + + R+       +   L  LKTL L + + K  V      +   L+ L L 
Sbjct: 162 LRLYNNQLKRVPEG----AFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQ 213

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.1 bits (154), Expect = 8e-11
 Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 18/184 (9%)

Query: 517 ELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQ- 575
           +L+L  N  +     +F  +  L  L +++N+L   +P  +     +LE L +++N+LQ 
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA 99

Query: 576 --GHIFSEKFNLTNLMTLQLDGNNFIGEIPE----SLSKCYMLRGLYLSDNHLFGKIPRW 629
               +F     L NL  L+LD N  +  +P     SL+K   L  L L  N L   +P+ 
Sbjct: 100 LPIGVFD---QLVNLAELRLDRNQ-LKSLPPRVFDSLTK---LTYLSLGYNEL-QSLPKG 151

Query: 630 L-GNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSP-ASIEQVH 687
           +   L +L+ + + NN L+      F +   LK L L NN +       F     ++ + 
Sbjct: 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211

Query: 688 LSKN 691
           L +N
Sbjct: 212 LQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 47/214 (21%), Positives = 78/214 (36%), Gaps = 42/214 (19%)

Query: 268 VHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLC-ELVLLRKLYIDNN 326
              + L ++ N L          +T L++LY + N+L   +  G+  EL  L  L++ +N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95

Query: 327 DLRGSLPLCL-ANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLE 385
            L+ +LP+ +   L +L  L +  NQL  ++       LT +  L L  N    +P   +
Sbjct: 96  KLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLP---K 150

Query: 386 PLF-NLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSV 444
            +F  L+ L+      N              QL  +        G F         L   
Sbjct: 151 GVFDKLTSLKELRLYNN--------------QLKRVP------EGAF-------DKL--T 181

Query: 445 NLSHLNLSG----EFPNWLLENNTNLETLLLANN 474
            L  L L        P    ++   L+ L L  N
Sbjct: 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 58/224 (25%), Positives = 90/224 (40%), Gaps = 50/224 (22%)

Query: 528 SIPSS-FADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQ---GHIFSEKF 583
           +IPS+  AD    ++LD+ +N+L+  +P +       L +L L++N+LQ     IF    
Sbjct: 30  AIPSNIPAD---TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK--- 82

Query: 584 NLTNLMTLQLDGNNFIGEIP----ESLSKCYMLRGLYLSDNHLFGKIPRWL-GNLPTLQY 638
            L NL TL +  N  +  +P    + L     L  L L  N L   +P  +  +L  L Y
Sbjct: 83  ELKNLETLWVTDNK-LQALPIGVFDQLVN---LAELRLDRNQL-KSLPPRVFDSLTKLTY 137

Query: 639 IIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPS-CF-SPASIEQVHLSKNKIEGR 696
                                   L L  N +  +LP   F    S++++ L  N+++  
Sbjct: 138 ------------------------LSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRV 172

Query: 697 LESIIHDNPHLVTLDLSYNSLHGSIPNRI-DRLPQLNYLLLAHN 739
            E        L TL L  N L   +P    D L +L  L L  N
Sbjct: 173 PEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 47/217 (21%), Positives = 76/217 (35%), Gaps = 47/217 (21%)

Query: 340 TSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFN-LSKLQTFNG 398
              + LD+  N+L+ ++ S +   LT +  L L++N    +P  +   F  L  L+T   
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGI---FKELKNLETLWV 92

Query: 399 EINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSG----E 454
             N              +L ++        G F            VNL+ L L       
Sbjct: 93  TDN--------------KLQALP------IGVFD---------QLVNLAELRLDRNQLKS 123

Query: 455 FPNWLLENNTNLETLLLANNSL----FGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGT 510
            P  + ++ T L  L L  N L     G F         L  L ++NN  +  +P     
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNELQSLPKGVFD----KLTSLKELRLYNNQLK-RVPEGAFD 178

Query: 511 YLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNN 547
            L  L  L L  N        +F  ++ L+ L +  N
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.5 bits (124), Expect = 5e-07
 Identities = 47/210 (22%), Positives = 76/210 (36%), Gaps = 37/210 (17%)

Query: 318 LRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHF 377
            +KL + +N L          LT LR+L ++ N+L   + +     L ++E L +++N  
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97

Query: 378 FQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYH 437
             +PI +     L  L     + N              QL S+          F      
Sbjct: 98  QALPIGV--FDQLVNLAELRLDRN--------------QLKSLP------PRVF------ 129

Query: 438 QHDLNSVNLSHLNLSG----EFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATL 493
              L    L++L+L        P  + +  T+L+ L L NN L            +L TL
Sbjct: 130 -DSL--TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL 186

Query: 494 DVFNNFFQGHIPVEIGTYLPGLMELNLSRN 523
            + NN  +  +P      L  L  L L  N
Sbjct: 187 KLDNNQLKR-VPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 50/210 (23%), Positives = 81/210 (38%), Gaps = 52/210 (24%)

Query: 62  SSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKD-FRGLRKLNTLYLG 120
           +  + L L  N+L+ S+  K  + L+ L  L +  N ++ L  P   F+ L+ L TL++ 
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTL--PAGIFKELKNLETLWV- 92

Query: 121 GSGIPRIDGSKVLQSI-----GSLPSLKTLYLSHTKFKGTVVNQKL-----HNFTNLEEL 170
                       LQ++       L +L  L L   +       + L      + T L  L
Sbjct: 93  --------TDNKLQALPIGVFDQLVNLAELRLDRNQL------KSLPPRVFDSLTKLTYL 138

Query: 171 ILDESDLHVSQLLQSI-----ASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWV 225
                 L  ++ LQS+        TSLK L + +  LK  +    F K   L+ L +   
Sbjct: 139 -----SLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKL--- 188

Query: 226 QVDVNTNFLQIVGE----SMPSLNFLSLTN 251
               + N L+ V E    S+  L  L L  
Sbjct: 189 ----DNNQLKRVPEGAFDSLEKLKMLQLQE 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 41/161 (25%), Positives = 75/161 (46%), Gaps = 17/161 (10%)

Query: 615 LYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIE-FCQRDSLKILDLSNNSIFGT 673
           L L  N L     +    L  L+ + + +N L+  +P   F +  +L+ L +++N +   
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKL-QA 99

Query: 674 LPSCF--SPASIEQVHLSKNKIEGRLESIIHDN-PHLVTLDLSYNSLHGSIPNRI-DRLP 729
           LP        ++ ++ L +N+++  L   + D+   L  L L YN L  S+P  + D+L 
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLT 157

Query: 730 QLNYLLLAHNYIKGEIPV----QLCQLKEVRLIDLSHNNLS 766
            L  L L +N +K  +P     +L +LK    + L +N L 
Sbjct: 158 SLKELRLYNNQLK-RVPEGAFDKLTELKT---LKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 53/237 (22%), Positives = 91/237 (38%), Gaps = 62/237 (26%)

Query: 81  KGLNSL-----SNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQS 135
           K L ++     ++ ++LD+  N + +L   K F  L KL  LYL             LQ+
Sbjct: 26  KKLTAIPSNIPADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLN---------DNKLQT 75

Query: 136 I-----GSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSI---- 186
           +       L +L+TL+++  K +  +         NL EL      L  +QL +S+    
Sbjct: 76  LPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAEL-----RLDRNQL-KSLPPRV 128

Query: 187 -ASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLN 245
             S T L +LS+    L+ +L    F K  +L+ L +         N L+     +P   
Sbjct: 129 FDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRL-------YNNQLK----RVPEGA 176

Query: 246 FLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSN 302
           F  LT                   L+ L + +N L+        ++  L++L    N
Sbjct: 177 FDKLTE------------------LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 16/121 (13%)

Query: 6   FTPFQQLESLDLSWNNIAGCVQNESLER--LSRLTNLKFLYLNDN---HFNNSIFSSLGG 60
           F+P+++L  +DLS N I        L       L +L  L L  N       S+F    G
Sbjct: 52  FSPYKKLRRIDLSNNQI------SELAPDAFQGLRSLNSLVLYGNKITELPKSLFE---G 102

Query: 61  LSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLG 120
           L SL+ L L  N++N  + +     L NL  L +  N ++  +    F  LR + T++L 
Sbjct: 103 LFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLA 160

Query: 121 G 121
            
Sbjct: 161 Q 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 59.7 bits (145), Expect = 4e-10
 Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 15/135 (11%)

Query: 517 ELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQ- 575
           E+ L +N      P +F+  K L R+D+SNNQ++ E+      G  SL  L L  N++  
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 576 --GHIFSEKFNLTNLMTLQLDGNNFIGEIPE----SLSKCYMLRGLYLSDNHLFGKIPRW 629
               +F     L +L  L L+ N  I  +       L     L  L L DN L       
Sbjct: 95  LPKSLFE---GLFSLQLLLLNANK-INCLRVDAFQDLHN---LNLLSLYDNKLQTIAKGT 147

Query: 630 LGNLPTLQYIIMPNN 644
              L  +Q + +  N
Sbjct: 148 FSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 14/142 (9%)

Query: 464 TNLETLLLANNSL----FGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELN 519
             +  + L  N++     G+F      ++KL  +D+ NN     +  +    L  L  L 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAF----SPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLV 86

Query: 520 LSRNAFNGSIPSS-FADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHI 578
           L  N     +P S F  +  L+ L ++ N++   +         +L +L+L +N+LQ  I
Sbjct: 87  LYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TI 143

Query: 579 FSEKF-NLTNLMTLQLDGNNFI 599
               F  L  + T+ L  N FI
Sbjct: 144 AKGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 15/100 (15%)

Query: 3   ASLFTPFQQLESLDLSWNNIAGCVQNESLER--LSRLTNLKFLYLNDNHFN---NSIFSS 57
              F   + L SL L  N I        L +     L +L+ L LN N  N      F  
Sbjct: 73  PDAFQGLRSLNSLVLYGNKI------TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ- 125

Query: 58  LGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGN 97
              L +L  LSL DN+L  +I     + L  ++ + +  N
Sbjct: 126 --DLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 5/111 (4%)

Query: 659 SLKILDLSNNSIFGTLPSCFSP-ASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSL 717
           ++  + L  N+I    P  FSP   + ++ LS N+I             L +L L  N +
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92

Query: 718 HGSIPNRI-DRLPQLNYLLLAHNYIKGEIPVQL-CQLKEVRLIDLSHNNLS 766
              +P  + + L  L  LLL  N I   + V     L  + L+ L  N L 
Sbjct: 93  T-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 34/134 (25%), Positives = 47/134 (35%), Gaps = 17/134 (12%)

Query: 615 LYLSDNHLFGKIPRW-LGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSI--- 670
           + L  N +   IP         L+ I + NN +    P  F    SL  L L  N I   
Sbjct: 37  IRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 671 ----FGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRI- 725
               F  L S      ++ + L+ NKI         D  +L  L L  N L  +I     
Sbjct: 96  PKSLFEGLFS------LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTF 148

Query: 726 DRLPQLNYLLLAHN 739
             L  +  + LA N
Sbjct: 149 SPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 30/157 (19%)

Query: 319 RKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFF 378
            ++ ++ N ++   P   +    LR +D+S NQ++E ++  +   L S+  L+L  N   
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKIT 93

Query: 379 QIPISLEPLF-NLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYH 437
           ++P S   LF  L  LQ      N              ++  +          F      
Sbjct: 94  ELPKS---LFEGLFSLQLLLLNAN--------------KINCL------RVDAFQ----D 126

Query: 438 QHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANN 474
            H+LN ++L    L              ++T+ LA N
Sbjct: 127 LHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 62.2 bits (151), Expect = 3e-10
 Identities = 42/212 (19%), Positives = 83/212 (39%), Gaps = 17/212 (8%)

Query: 4   SLFTPFQQLESLDLSWNNIAGCVQNESLERL-SRLTNLKFLYLNDNHFNNSIFSSLGGLS 62
           +      +++ +DLS + I    +  +L  + S+ + L+ L L     ++ I ++L   S
Sbjct: 87  AEHFSPFRVQHMDLSNSVI----EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 142

Query: 63  SLRHLSLADNRLNGSIDIKGL-NSLSNLEELDMTG------NAIENLVVPKDFRGLRKLN 115
           +L  L+L+         ++ L +S S L+EL+++         ++  V          + 
Sbjct: 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA----HVSETIT 198

Query: 116 TLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDES 175
            L L G     +  S +   +   P+L  L LS +        Q+      L+ L L   
Sbjct: 199 QLNLSGY-RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257

Query: 176 DLHVSQLLQSIASFTSLKHLSMQDCVLKGALH 207
              + + L  +    +LK L +   V  G L 
Sbjct: 258 YDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 289

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 57.6 bits (139), Expect = 7e-09
 Identities = 40/234 (17%), Positives = 78/234 (33%), Gaps = 24/234 (10%)

Query: 137 GSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLS 196
           G L S   +     +        +  +   ++ + L  S + VS L   ++  + L++LS
Sbjct: 65  GRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124

Query: 197 MQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNK 256
           ++   L   +      K  NL  L++       +   LQ +  S   L+ L+L+      
Sbjct: 125 LEGLRLSDPIV-NTLAKNSNLVRLNLSGCS-GFSEFALQTLLSSCSRLDELNLSWC---- 178

Query: 257 HTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELV 316
               ++ +   V      I   +L         N+    +             P L  L 
Sbjct: 179 FDFTEKHVQVAVAHVSETITQLNLSG----YRKNLQKSDLSTLVRR------CPNLVHLD 228

Query: 317 LLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEEL 370
           L   + + N+  +         L  L+ L +S      +I   +L+ L  I  L
Sbjct: 229 LSDSVMLKNDCFQ-----EFFQLNYLQHLSLSRCY---DIIPETLLELGEIPTL 274

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 52.2 bits (125), Expect = 4e-07
 Identities = 53/288 (18%), Positives = 101/288 (35%), Gaps = 15/288 (5%)

Query: 64  LRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSG 123
              L L +  L  S   K    L++ E L  T +     + P     L     +      
Sbjct: 21  FSCLCLPE-LLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPR 79

Query: 124 IPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLL 183
                  + L    S   ++ + LS++  + + ++  L   + L+ L L+   L    ++
Sbjct: 80  SFM---DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS-DPIV 135

Query: 184 QSIASFTSLKHLSMQDCVLKGALHGQDFLKF-KNLEYLDMGWVQVDVNTNFLQIVGESMP 242
            ++A  ++L  L++  C        Q  L     L+ L++ W       +    V     
Sbjct: 136 NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE 195

Query: 243 SLNFLSLTNSSLNKHTILDQGLCQLV----HLQGLYIRD-NDLRDGLPWCLANMTSLQVL 297
           ++  L+L+    N   +    L  LV    +L  L + D   L++        +  LQ L
Sbjct: 196 TITQLNLSGYRKN---LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 252

Query: 298 YASS-NQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRV 344
             S    +       L E+  L+ L +      G+L L    L  L++
Sbjct: 253 SLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI 300

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 38/194 (19%), Positives = 67/194 (34%), Gaps = 13/194 (6%)

Query: 439 HDLNSVNLSHLNLSGEFPN-----WLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATL 493
              +   + H++LS           +L   + L+ L L    L       +  +  L  L
Sbjct: 88  EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147

Query: 494 DVFN-NFFQGHIPVEIGTYLPGLMELNLSR--NAFNGSIPSSFAD-MKMLERLDIS--NN 547
           ++   + F       + +    L ELNLS   +     +  + A   + + +L++S    
Sbjct: 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 207

Query: 548 QLTGEIPERMATGCFSLEILALSN-NRLQGHIFSEKFNLTNLMTLQLDGNNFIGEI-PES 605
            L       +   C +L  L LS+   L+   F E F L  L  L L     I       
Sbjct: 208 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 267

Query: 606 LSKCYMLRGLYLSD 619
           L +   L+ L +  
Sbjct: 268 LGEIPTLKTLQVFG 281

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 11/136 (8%)

Query: 13  ESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADN 72
             L L+ N        E+     +L  L+ +  ++N   +    +  G S +  + L  N
Sbjct: 35  AELRLNNNEFT---VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 73  RLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKD-FRGLRKLNTLYLGGSGIPRIDGSK 131
           RL  ++  K    L +L+ L +  N I  +    D F GL  +  L L  + I  +    
Sbjct: 92  RLE-NVQHKMFKGLESLKTLMLRSNRITCV--GNDSFIGLSSVRLLSLYDNQITTVAPG- 147

Query: 132 VLQSIGSLPSLKTLYL 147
              +  +L SL TL L
Sbjct: 148 ---AFDTLHSLSTLNL 160

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 59.3 bits (144), Expect = 6e-10
 Identities = 26/131 (19%), Positives = 57/131 (43%), Gaps = 7/131 (5%)

Query: 271 QGLYIRDNDLRDGLPW-CLANMTSLQVLYASSNQLTGNISPG-LCELVLLRKLYIDNNDL 328
             L + +N+            +  L+ +  S+N++T +I  G       + ++ + +N L
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL 93

Query: 329 RGSLPL-CLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPI-SLEP 386
             ++       L SL+ L +  N++T  + + S + L+S+  L L +N    +   + + 
Sbjct: 94  E-NVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151

Query: 387 LFNLSKLQTFN 397
           L +LS L    
Sbjct: 152 LHSLSTLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.9 bits (143), Expect = 9e-10
 Identities = 30/124 (24%), Positives = 46/124 (37%), Gaps = 18/124 (14%)

Query: 4   SLFTPFQQLESLDLSWNNIAGCVQNESLER--LSRLTNLKFLYLNDNH---FNNSIFSSL 58
            +F    QL  ++ S N I        +E       + +  + L  N      + +F   
Sbjct: 51  GIFKKLPQLRKINFSNNKI------TDIEEGAFEGASGVNEILLTSNRLENVQHKMFK-- 102

Query: 59  GGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKD-FRGLRKLNTL 117
            GL SL+ L L  NR+   +       LS++  L +  N I    V    F  L  L+TL
Sbjct: 103 -GLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITT--VAPGAFDTLHSLSTL 158

Query: 118 YLGG 121
            L  
Sbjct: 159 NLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 5/114 (4%)

Query: 266 QLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCE-LVLLRKLYID 324
           +L  L+ +   +N + D         + +  +  +SN+L  N+   + + L  L+ L + 
Sbjct: 55  KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLR 113

Query: 325 NNDLRGSLPL-CLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHF 377
           +N +   +       L+S+R+L +  NQ+T  ++  +   L S+  L L  N F
Sbjct: 114 SNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.2 bits (136), Expect = 8e-09
 Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 15/142 (10%)

Query: 464 TNLETLLLANNSL-----FGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMEL 518
                L L NN        G F        +L  ++  NN     I         G+ E+
Sbjct: 32  QYTAELRLNNNEFTVLEATGIF----KKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEI 86

Query: 519 NLSRNAFNGSIPSS-FADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGH 577
            L+ N    ++    F  ++ L+ L + +N++T  +      G  S+ +L+L +N++   
Sbjct: 87  LLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-T 143

Query: 578 IFSEKF-NLTNLMTLQLDGNNF 598
           +    F  L +L TL L  N F
Sbjct: 144 VAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 26/135 (19%), Positives = 57/135 (42%), Gaps = 6/135 (4%)

Query: 292 TSLQVLYASSNQLTGNISPGL-CELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYN 350
                L  ++N+ T   + G+  +L  LRK+   NN +           + +  + ++ N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 351 QLTENISSSSLMHLTSIEELILSNNHFFQIPI-SLEPLFNLSKLQTFNGEINAQTESHYD 409
           +L  N+       L S++ L+L +N    +   S   L ++  L  ++ +I       +D
Sbjct: 92  RLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150

Query: 410 SLTPKFQLTSISLSG 424
           +L     L++++L  
Sbjct: 151 TLH---SLSTLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 15/97 (15%)

Query: 6   FTPFQQLESLDLSWNNIAGCVQNESLER--LSRLTNLKFLYLNDNHF---NNSIFSSLGG 60
           F     +  + L+ N +      E+++      L +LK L L  N      N  F    G
Sbjct: 77  FEGASGVNEILLTSNRL------ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI---G 127

Query: 61  LSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGN 97
           LSS+R LSL DN++  ++     ++L +L  L++  N
Sbjct: 128 LSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 26/134 (19%), Positives = 48/134 (35%), Gaps = 10/134 (7%)

Query: 540 ERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFN-LTNLMTLQLDGNNF 598
             L ++NN+ T      +      L  +  SNN++   I    F   + +  + L  N  
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNR- 92

Query: 599 IGEIPE----SLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEF 654
           +  +       L     L+ L L  N +          L +++ + + +N +    P  F
Sbjct: 93  LENVQHKMFKGLES---LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149

Query: 655 CQRDSLKILDLSNN 668
               SL  L+L  N
Sbjct: 150 DTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 654 FCQRDSLKILDLSNNSIFGTLPSCFSPAS-IEQVHLSKNKIEGRLESIIHDNPHLVTLDL 712
           F +   L+ ++ SNN I       F  AS + ++ L+ N++E     +      L TL L
Sbjct: 53  FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112

Query: 713 SYNSLHGSIPNRI-DRLPQLNYLLLAHNYIK 742
             N +   + N     L  +  L L  N I 
Sbjct: 113 RSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 14/133 (10%)

Query: 67  LSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPR 126
           L L +N             L  L +++ + N I ++     F G   +N + L  + +  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNEILLTSNRLEN 95

Query: 127 IDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSI 186
           +   K+ +    L SLKTL L   +    V N      +++  L      L+ +Q + ++
Sbjct: 96  VQ-HKMFK---GLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLL-----SLYDNQ-ITTV 144

Query: 187 A--SFTSLKHLSM 197
           A  +F +L  LS 
Sbjct: 145 APGAFDTLHSLST 157

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 16/95 (16%), Positives = 39/95 (41%), Gaps = 6/95 (6%)

Query: 680 PASIEQVHLSKNKIEG-RLESIIHDNPHLVTLDLSYNSLHGSIPNRI-DRLPQLNYLLLA 737
           P    ++ L+ N+        I    P L  ++ S N +   I     +    +N +LL 
Sbjct: 31  PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT 89

Query: 738 HNYIKGEIPVQLCQ-LKEVRLIDLSHNNLSGRIPP 771
            N ++  +  ++ + L+ ++ + L  N ++  +  
Sbjct: 90  SNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGN 122

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 17/139 (12%)

Query: 87  SNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLY 146
               EL +  N    L     F+ L +L  +    + I  I+     +       +  + 
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFE---GASGVNEIL 87

Query: 147 LSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSI--ASF---TSLKHLSMQDCV 201
           L+  + +  V ++      +L+ L+L  +       +  +   SF   +S++ LS+ D  
Sbjct: 88  LTSNRLE-NVQHKMFKGLESLKTLMLRSNR------ITCVGNDSFIGLSSVRLLSLYDNQ 140

Query: 202 LKGALHGQDFLKFKNLEYL 220
           +     G  F    +L  L
Sbjct: 141 ITTVAPGA-FDTLHSLSTL 158

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 58.2 bits (141), Expect = 5e-09
 Identities = 46/323 (14%), Positives = 87/323 (26%), Gaps = 64/323 (19%)

Query: 442 NSVNLSHLNLSG---------EFPNWLLENNTNLETLLLANNSLFGS-----FRMPIHSH 487
              +++ LNLSG         E    L     N+ +L L+ N L         +      
Sbjct: 49  TPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIP 108

Query: 488 QKLATLDVFNNFFQGHIPVEIGTYL----PGLMELNLSRNAFNGSIPSSFADM-----KM 538
             +  LD+  N F      E           +  LNL  N            +       
Sbjct: 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN 168

Query: 539 LERLDISNNQLTGE----IPERMATGCFSLEILALSNNRLQ---GHIFSE--KFNLTNLM 589
           +  L++  N L  +    + + +A+   S+  L LS N L        +        +++
Sbjct: 169 VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVV 228

Query: 590 TLQLDGNNF----IGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNN 645
           +L L  N      +  +         L+ +YL  + +          L        PN  
Sbjct: 229 SLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGA----AFPNIQ 284

Query: 646 LEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPA------SIEQVHLSKNKI-----E 694
                         + ++D +   I  +     S          +   L    +      
Sbjct: 285 -------------KIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKH 331

Query: 695 GRLESIIHDNPHLVTLDLSYNSL 717
                 ++    L     +   L
Sbjct: 332 QTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.8 bits (140), Expect = 7e-09
 Identities = 56/386 (14%), Positives = 117/386 (30%), Gaps = 90/386 (23%)

Query: 10  QQLESLDLSWNNIAGCVQNESLERLSRL-----TNLKFLYLNDNHFNN----SIFSSLGG 60
             + SLDLS NN+     + S   L +       ++  L L+ N         +   L  
Sbjct: 22  HGVTSLDLSLNNL----YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 61  L-SSLRHLSLADNRLNGSIDIKGL-----NSLSNLEELDMTGNAIENLVVPKDFRGLRKL 114
           + +++  L+L+ N L        L          +  LD+  N   +    +  +    L
Sbjct: 78  IPANVTSLNLSGNFL-SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 115 NTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDE 174
                                     S+ +L L                       +  +
Sbjct: 137 PA------------------------SITSLNLRGND-------------------LGIK 153

Query: 175 SDLHVSQLLQSIASFTSLKHLSMQDCVL--KGALHGQDFLKFKN--LEYLDMGWVQVDVN 230
           S   + Q+L +I    ++  L+++   L  K       FL      +  LD+    + + 
Sbjct: 154 SSDELIQILAAIP--ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK 211

Query: 231 --TNFLQIVGESMPSLNFLSLTNSSLNKHTI--LDQGLCQLVHLQGLYIRDNDLRDGLPW 286
                  I       +  L+L  + L+  ++  L      L HLQ +Y+  + +++    
Sbjct: 212 SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKE 271

Query: 287 C-------LANMTSLQVLYASSNQLTGNISPGLCELV-----LLRKLYIDNNDL-----R 329
                     N+  + ++  +  ++  + S  +  L+           + N  L      
Sbjct: 272 QCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKH 331

Query: 330 GSLPLCLANLTSLRVLDVSYNQLTEN 355
            +    L     LR    +   L E+
Sbjct: 332 QTNIEDLNIPDELRESIQTCKPLLEH 357

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 53/301 (17%), Positives = 99/301 (32%), Gaps = 46/301 (15%)

Query: 513 PGLMELNLSRNAFNGSIPSSFADM-----KMLERLDISNNQLTGE----IPERMATGCFS 563
            G+  L+LS N                    +  L++S N L  +    + + +A    +
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 564 LEILALSNNRLQ---GHIFSE--KFNLTNLMTLQLDGNNF----IGEIPESLSKCYM-LR 613
           +  L LS N L         +        +  L L  N+F      E  ++ S     + 
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141

Query: 614 GLYLSDNHLFGK----IPRWLGNLP-TLQYIIMPNNNL--EGPIPIEFCQRD---SLKIL 663
            L L  N L  K    + + L  +P  +  + +  NNL  +    +         S+  L
Sbjct: 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSL 201

Query: 664 DLSNNSI----FGTLPSCFS--PASIEQVHLSKNKIEG----RLESIIHDNPHLVTLDLS 713
           DLS N +    +  L   FS  P  +  ++L  N + G     L+ +     HL T+ L 
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261

Query: 714 YNSLHG-------SIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 766
           Y+ +         ++      + ++  +      I     + +  L           +L 
Sbjct: 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLL 321

Query: 767 G 767
            
Sbjct: 322 N 322

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 45/332 (13%), Positives = 97/332 (29%), Gaps = 73/332 (21%)

Query: 288 LANMTSLQVLYASSNQLTGNISPGLCELVL-----LRKLYIDNNDL--RGSLPLCLA--- 337
            +    +  L  S N L    +  L +        +  L +  N L  + S  L      
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 338 NLTSLRVLDVSYNQLTEN----ISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSK- 392
              ++  L++S N L+      +  +      +I  L L  N       S +      + 
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-----FSSKSSSEFKQA 132

Query: 393 LQTFNGEINAQTESHYDSLTPKFQLTSISLS----GYVDGGTFPEFLYHQHDLNSVNLSH 448
                                   +TS++L     G        + L         N++ 
Sbjct: 133 FSNLPA-----------------SITSLNLRGNDLGIKSSDELIQILAAIP----ANVNS 171

Query: 449 LNLSG---------EFPNWLLENNTNLETLLLANNSLFGSFRMPI-----HSHQKLATLD 494
           LNL G         E   +L     ++ +L L+ N L       +          + +L+
Sbjct: 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN 231

Query: 495 VFNNFFQGHIPVEIGTYL---PGLMELNLSRNAFNG-------SIPSSFADMKMLERLDI 544
           +  N   G     +         L  + L  +           ++ ++F +++ +  +D 
Sbjct: 232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK 291

Query: 545 SNNQLTGE----IPERMATGCFSLEILALSNN 572
           +  ++       I   +       ++ +L N 
Sbjct: 292 NGKEIHPSHSIPISNLIRELSGKADVPSLLNQ 323

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.0 bits (125), Expect = 6e-07
 Identities = 48/300 (16%), Positives = 92/300 (30%), Gaps = 59/300 (19%)

Query: 459 LLENNTNLETLLLANNSLFGS-----FRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLP 513
                  + +L L+ N+L+        +   ++   + +L++  N        E+   L 
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 514 G----LMELNLSRNAFNGSIPSSFADM-----KMLERLDISNNQLTGE----IPERMATG 560
                +  LNLS N  +                 +  LD+  N  + +      +  +  
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 561 CFSLEILALSNNRLQ---GHIFSE--KFNLTNLMTLQLDGNNF----IGEIPESL-SKCY 610
             S+  L L  N L         +       N+ +L L GNN       E+ + L S   
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA 196

Query: 611 MLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSI 670
            +  L LS N L  K    L  +           N              +  L+L  N +
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYI------FSSIPN-------------HVVSLNLCLNCL 237

Query: 671 FGTLPSCFSPA-----SIEQVHLSKNKI-----EGR--LESIIHDNPHLVTLDLSYNSLH 718
            G               ++ V+L  + +     E    L +   +   ++ +D +   +H
Sbjct: 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 40/252 (15%), Positives = 87/252 (34%), Gaps = 39/252 (15%)

Query: 162 HNFTNLEELILDE---SDLHVSQLLQSIASF-TSLKHLSMQDCVL--KGALHGQDFLKFK 215
           +   ++  L L        +  +L+Q +A+   ++  L++    L  K +      L   
Sbjct: 48  NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAI 107

Query: 216 N--LEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQL------ 267
              +  LD+GW      +       ++  +L   S+T+ +L  + +  +   +L      
Sbjct: 108 PFTITVLDLGWNDFSSKS--SSEFKQAFSNLP-ASITSLNLRGNDLGIKSSDELIQILAA 164

Query: 268 --VHLQGLYIRDNDLRDGLPWCLANM-----TSLQVLYASSNQLTGNISPGLCELVL--- 317
              ++  L +R N+L       LA        S+  L  S+N L       L  +     
Sbjct: 165 IPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP 224

Query: 318 --LRKLYIDNNDLRGS----LPLCLANLTSLRVLDVSYNQLTE------NISSSSLMHLT 365
             +  L +  N L G     L L   +L  L+ + + Y+ +            ++  ++ 
Sbjct: 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ 284

Query: 366 SIEELILSNNHF 377
            I  +  +    
Sbjct: 285 KIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 27/217 (12%), Positives = 73/217 (33%), Gaps = 27/217 (12%)

Query: 3   ASLFTPFQQLESLDLSWNNI--AGCVQ-NESLERLSRLTNLKFLYLNDNHFNNS----IF 55
            +       + SL+L  N++      +  + L  +    N+  L L  N+  +     + 
Sbjct: 131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP--ANVNSLNLRGNNLASKNCAELA 188

Query: 56  SSLGGL-SSLRHLSLADNRLNGSIDIKGL-----NSLSNLEELDMTGNAIENLVVP---K 106
             L  + +S+  L L+ N L G      L     +  +++  L++  N +    +     
Sbjct: 189 KFLASIPASVTSLDLSANLL-GLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247

Query: 107 DFRGLRKLNTLYLGGSGIPRIDGSK---VLQSIGSLPSLKTLYLSHTKFKGTVVNQ---- 159
               L+ L T+YL    +  +   +   +  +  ++  +  +  +  +   +        
Sbjct: 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNL 307

Query: 160 -KLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHL 195
            +  +       +L++  +   +   +I        L
Sbjct: 308 IRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDEL 344

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 46/328 (14%), Positives = 96/328 (29%), Gaps = 62/328 (18%)

Query: 336 LANLTSLRVLDVSYNQLTEN----ISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLS 391
            +    +  LD+S N L       +  +      S+  L LS N      +  +    L 
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-----LGFKNSDELV 72

Query: 392 K-LQTFNGEINAQTESHYDSLTPKFQLTSISLS----GYVDGGTFPEFLYHQH-DLNSVN 445
           + L                       +TS++LS     Y       + L      +  ++
Sbjct: 73  QILAAIPA-----------------NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLD 115

Query: 446 LSHLNLSGE----FPNWLLENNTNLETLLLANNSLFGS-----FRMPIHSHQKLATLDVF 496
           L   + S +    F         ++ +L L  N L         ++       + +L++ 
Sbjct: 116 LGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR 175

Query: 497 NNFFQGHIPVEIGTYLPG----LMELNLSRNAFNGSIPSSFADM-----KMLERLDISNN 547
            N        E+  +L      +  L+LS N       +  A +       +  L++  N
Sbjct: 176 GNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN 235

Query: 548 QLTGEIPERMATG---CFSLEILALSNNRLQGHIFSEKF--------NLTNLMTLQLDGN 596
            L G   E +         L+ + L  + +  ++  E+         N+  ++ +  +G 
Sbjct: 236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIV-KNMSKEQCKALGAAFPNIQKIILVDKNGK 294

Query: 597 NFIGEIPESLSKCYMLRGLYLSDNHLFG 624
                    +S              L  
Sbjct: 295 EIHPSHSIPISNLIRELSGKADVPSLLN 322

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 2e-07
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 10/97 (10%)

Query: 29  ESLERLSRLTNLKFLYLNDNHFNNSIFS----SLGGLSSLRHLSLADNRLNGSIDIKGLN 84
           +SL  L    NL  LY+ +      +       L GL  LR+L++  + L   +     +
Sbjct: 22  DSLHHLPGAENLTELYIEN---QQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFH 77

Query: 85  SLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGG 121
               L  L+++ NA+E+L   K  +GL  L  L L G
Sbjct: 78  FTPRLSRLNLSFNALESL-SWKTVQGL-SLQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.8 bits (126), Expect = 3e-07
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 6/100 (6%)

Query: 53  SIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLR 112
                L G  +L  L + + +    ++++ L  L  L  L +  + +   V P  F    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTP 80

Query: 113 KLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKF 152
           +L+ L L  + +  +    V        SL+ L LS    
Sbjct: 81  RLSRLNLSFNALESLSWKTV-----QGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.3 bits (122), Expect = 8e-07
 Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 3/96 (3%)

Query: 528 SIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKF-NLT 586
                    + L  L I N Q    +  R   G   L  L +  + L+  +  + F    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 587 NLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHL 622
            L  L L  N  +  +     +   L+ L LS N L
Sbjct: 81  RLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 1e-06
 Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 2/98 (2%)

Query: 301 SNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPL-CLANLTSLRVLDVSYNQLTENISSS 359
           +     +    L     L +LYI+N      L L  L  L  LR L +  + L   ++  
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74

Query: 360 SLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFN 397
           +      +  L LS N    +        +L +L    
Sbjct: 75  AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 3e-06
 Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 4/107 (3%)

Query: 841 DLSC-NKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLLHGK 898
            L C      +    +     +  L + +      +       L ++ +L +  + L   
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-F 70

Query: 899 IPPQ-LIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLC 944
           + P        L    +++N L        Q  + +E    GNP  C
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 4e-06
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 5/92 (5%)

Query: 6   FTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLR 65
               + L  L +        ++   L  L  L N   L +  +        +      L 
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRN---LTIVKSGLRFVAPDAFHFTPRLS 83

Query: 66  HLSLADNRLNGSIDIKGLNSLSNLEELDMTGN 97
            L+L+ N L  S+  K +  LS L+EL ++GN
Sbjct: 84  RLNLSFNALE-SLSWKTVQGLS-LQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 4e-06
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 601 EIPESLSKCYMLRGLYLSDNHLFGKIPRW-LGNLPTLQYIIMPNNNLEGPIPIEFCQRDS 659
           +    L     L  LY+ +      +    L  L  L+ + +  + L    P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 660 LKILDLSNNSIFGTLPSCFSPASIEQVHLSKN 691
           L  L+LS N++           S++++ LS N
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 6e-06
 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 6/107 (5%)

Query: 72  NRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSK 131
            R      +  L    NL EL +        +  +D RGL +L  L +  SG+  +    
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-- 73

Query: 132 VLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLH 178
              +    P L  L LS        ++ K     +L+EL+L  + LH
Sbjct: 74  --DAFHFTPRLSRLNLSFNAL--ESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 3e-05
 Identities = 13/87 (14%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 834 LTSMSGIDLSCNKLTGEIPTQ-IGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 892
             +++ + +   +    +  + +  L  +  L +  + L    P  F    ++  L+LS+
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 893 NLLHGKIPPQLIVLNTLEVFKVAYNNL 919
           N L   +  + +   +L+   ++ N L
Sbjct: 90  NALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 7e-05
 Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 27/117 (23%)

Query: 262 QGLCQLVHLQGLYIRDNDLRDGLPW-CLANMTSLQVLYASSNQLTGNISPGLCELVLLRK 320
             L    +L  LYI +      L    L  +  L+ L    + L                
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--------------- 69

Query: 321 LYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHF 377
            ++  +               L  L++S+N L   +S  ++  L S++EL+LS N  
Sbjct: 70  -FVAPDAFHF--------TPRLSRLNLSFNALES-LSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 3e-04
 Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 8/116 (6%)

Query: 659 SLKILDLSNNSIFGTLPS-CFSP-ASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNS 716
           +L  L + N      L          +  + + K+ +        H  P L  L+LS+N+
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91

Query: 717 LHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPC 772
           L  S+  +  +   L  L+L+ N +        C L+ ++  +             
Sbjct: 92  LE-SLSWKTVQGLSLQELVLSGNPL-----HCSCALRWLQRWEEEGLGGVPEQKLQ 141

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 6e-04
 Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 3/100 (3%)

Query: 325 NNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISL 384
             D        L    +L  L +   Q  +++    L  L  +  L +  +    +    
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-- 73

Query: 385 EPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSG 424
           +      +L   N   NA     + ++     L  + LSG
Sbjct: 74  DAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLSG 112

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 24/115 (20%)

Query: 517 ELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFS----LEILALSNN 572
           EL L  N F   +P   ++ K L  +D+SNN+++  +        FS    L  L LS N
Sbjct: 35  ELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSN----QSFSNMTQLLTLILSYN 88

Query: 573 RLQ---GHIFSEKFNLTNLMTLQLDGNNFIGEIPE----SLSKCYMLRGLYLSDN 620
           RL+      F     L +L  L L GN+ I  +PE     LS    L  L +  N
Sbjct: 89  RLRCIPPRTFD---GLKSLRLLSLHGND-ISVVPEGAFNDLSA---LSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 255 NKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCE 314
           N+ T++ + L    HL  + + +N +        +NMT L  L  S N+L   I P   +
Sbjct: 41  NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFD 99

Query: 315 -LVLLRKLYIDNNDLRGSLPL-CLANLTSL 342
            L  LR L +  ND+   +P     +L++L
Sbjct: 100 GLKSLRLLSLHGNDIS-VVPEGAFNDLSAL 128

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 9/74 (12%)

Query: 830 QGRILTSM-SGI-------DLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSN 881
             + L  +  GI        L  N+ T  +P ++     +  ++LS+N ++     +FSN
Sbjct: 18  SNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN 76

Query: 882 LKQIESLDLSYNLL 895
           + Q+ +L LSYN L
Sbjct: 77  MTQLLTLILSYNRL 90

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 15/113 (13%)

Query: 13  ESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFN---NSIFSSLGGLSSLRHLSL 69
             L L  N           + LS   +L  + L++N  +   N  FS+   ++ L  L L
Sbjct: 34  TELYLDGNQF-----TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSN---MTQLLTLIL 85

Query: 70  ADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKD-FRGLRKLNTLYLGG 121
           + NRL   I  +  + L +L  L + GN I    VP+  F  L  L+ L +G 
Sbjct: 86  SYNRLR-CIPPRTFDGLKSLRLLSLHGNDISV--VPEGAFNDLSALSHLAIGA 135

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 319 RKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFF 378
            +LY+D N     +P  L+N   L ++D+S N+++  +S+ S  ++T +  LILS N   
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST-LSNQSFSNMTQLLTLILSYNRLR 91

Query: 379 QIP 381
            IP
Sbjct: 92  CIP 94

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.5 bits (121), Expect = 8e-07
 Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 21/162 (12%)

Query: 517 ELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQ- 575
           +L+L          ++F  +  L  L++  NQL   +   +      L  L L+NN+L  
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLAS 97

Query: 576 --GHIFSEKFNLTNLMTLQLDGNNFIGEIPE----SLSKCYMLRGLYLSDNHLFGKIPRW 629
               +F    +LT L  L L   N +  +P      L+K   L+ L L+ N L   IP  
Sbjct: 98  LPLGVFD---HLTQLDKLYLG-GNQLKSLPSGVFDRLTK---LKELRLNTNQL-QSIPA- 148

Query: 630 LG---NLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNN 668
            G    L  LQ + +  N L+      F +   L+ + L  N
Sbjct: 149 -GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 8/145 (5%)

Query: 255 NKHTILDQGLCQ-LVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGL- 312
                L     + L  L  L +  N L+        ++T L  L  ++NQL  ++  G+ 
Sbjct: 45  TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVF 103

Query: 313 CELVLLRKLYIDNNDLRGSLPL-CLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELI 371
             L  L KLY+  N L+ SLP      LT L+ L ++ NQL   I + +   LT+++ L 
Sbjct: 104 DHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLS 161

Query: 372 LSNNHFFQIPISLEPLFNLSKLQTF 396
           LS N    +P        L KLQT 
Sbjct: 162 LSTNQLQSVPHG--AFDRLGKLQTI 184

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 22/151 (14%)

Query: 3   ASLFTPFQQLESLDLSWNNIAGCVQNESLER--LSRLTNLKFLYLNDNHFN---NSIFSS 57
            + F    +L  L+L +N +       +L       LT L  L L +N        +F  
Sbjct: 52  DATFRGLTKLTWLNLDYNQLQ------TLSAGVFDDLTELGTLGLANNQLASLPLGVFDH 105

Query: 58  LGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKD-FRGLRKLNT 116
              L+ L  L L  N+L  S+     + L+ L+EL +  N ++++  P   F  L  L T
Sbjct: 106 ---LTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSI--PAGAFDKLTNLQT 159

Query: 117 LYLGGSGIPRIDGSKVLQSIGSLPSLKTLYL 147
           L L  + +  +       +   L  L+T+ L
Sbjct: 160 LSLSTNQLQSVPHG----AFDRLGKLQTITL 186

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 25/166 (15%)

Query: 38  TNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGN 97
            + + L L          ++  GL+ L  L+L  N+L  ++     + L+ L  L +  N
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANN 93

Query: 98  AIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSI-----GSLPSLKTLYLSHTKF 152
            + +L     F  L +L+ LYLGG+          L+S+       L  LK L L+  + 
Sbjct: 94  QLASL-PLGVFDHLTQLDKLYLGGN---------QLKSLPSGVFDRLTKLKELRLNTNQL 143

Query: 153 KGTVVNQKLHNFTNLEELILDESDLHVSQLLQSI--ASFTSLKHLS 196
           + ++        TNL+ L      L  +Q LQS+   +F  L  L 
Sbjct: 144 Q-SIPAGAFDKLTNLQTL-----SLSTNQ-LQSVPHGAFDRLGKLQ 182

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 15/100 (15%)

Query: 3   ASLFTPFQQLESLDLSWNNIAGCVQNESLER--LSRLTNLKFLYLNDNHFN---NSIFSS 57
             +F    QL+ L L  N      Q +SL      RLT LK L LN N         F  
Sbjct: 100 LGVFDHLTQLDKLYLGGN------QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK 153

Query: 58  LGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGN 97
              L++L+ LSL+ N+L  S+     + L  L+ + + GN
Sbjct: 154 ---LTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 49/186 (26%), Positives = 69/186 (37%), Gaps = 40/186 (21%)

Query: 319 RKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFF 378
            KL + +  L          LT L  L++ YNQL   +S+     LT +  L L+NN   
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANN--- 93

Query: 379 QIPISLEP-LF-NLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLY 436
           Q+  SL   +F +L++L       N              QL S+  SG  D  T      
Sbjct: 94  QLA-SLPLGVFDHLTQLDKLYLGGN--------------QLKSLP-SGVFDRLT------ 131

Query: 437 HQHDLNSVNLSHLNLSG----EFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLAT 492
                    L  L L+       P    +  TNL+TL L+ N L            KL T
Sbjct: 132 --------KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT 183

Query: 493 LDVFNN 498
           + +F N
Sbjct: 184 ITLFGN 189

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 51.5 bits (122), Expect = 8e-07
 Identities = 24/167 (14%), Positives = 51/167 (30%), Gaps = 19/167 (11%)

Query: 458 WLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGT-YLPGLM 516
            +L+    L  L +   +   +  +       L +L++ +      +  +I    LP L 
Sbjct: 166 PVLDAMPLLNNLKIKGTN---NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLE 222

Query: 517 ELNLSRNAFNGSIPSSFAD---------MKMLERLDISNNQLTGEIPERMATGCF--SLE 565
           +L L     +                     L+ L I + +    + E          LE
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE 282

Query: 566 ILALSNNRLQG----HIFSEKFNLTNLMTLQLDGNNFIGEIPESLSK 608
            + +S   L       +      + +L  + +  N    E+ + L K
Sbjct: 283 TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.4 bits (114), Expect = 7e-06
 Identities = 26/162 (16%), Positives = 54/162 (33%), Gaps = 19/162 (11%)

Query: 3   ASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGG-- 60
           + +      L +L +   N     +           NLK L +      +S+   + G  
Sbjct: 165 SPVLDAMPLLNNLKIKGTNNLSIGKK-------PRPNLKSLEIISGGLPDSVVEDILGSD 217

Query: 61  LSSLRHLSLADNRLNGSID--------IKGLNSLSNLEELDMTGNAIENLVVPK--DFRG 110
           L +L  L L     +   D        +   +   NL+ L +     +N+VV    +   
Sbjct: 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI 277

Query: 111 LRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKF 152
           L +L T+ +    +       +L  +  +  LK + + +   
Sbjct: 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.3 bits (111), Expect = 2e-05
 Identities = 18/123 (14%), Positives = 41/123 (33%), Gaps = 17/123 (13%)

Query: 445 NLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHI 504
           NL  L L     ++  + + N+   L + +               L  L + +   Q  +
Sbjct: 220 NLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFP-----------NLKWLGIVDAEEQNVV 268

Query: 505 PVEIGT--YLPGLMELNLSRNAFNGS----IPSSFADMKMLERLDISNNQLTGEIPERMA 558
                    LP L  +++S           +      +K L+ +++  N L+ E+ + + 
Sbjct: 269 VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328

Query: 559 TGC 561
              
Sbjct: 329 KSL 331

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.6 bits (104), Expect = 1e-04
 Identities = 26/200 (13%), Positives = 60/200 (30%), Gaps = 18/200 (9%)

Query: 173 DESDLHVSQLLQSIASFTSLKHL-----SMQDCVLKGALHGQDFLKFKNLEYLDMGWVQV 227
           ++       ++++   F   + L       ++  +              +  L+   ++ 
Sbjct: 122 EDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKG 181

Query: 228 DVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWC 287
             N +  +    ++ SL  +S          IL   L  L  L      ++   DG    
Sbjct: 182 TNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241

Query: 288 LA------NMTSLQVLYASSNQLTGNISPGLCE---LVLLRKLYIDNNDLRGS----LPL 334
                      +L+ L     +    +     E   L  L  + I    L       L  
Sbjct: 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLD 301

Query: 335 CLANLTSLRVLDVSYNQLTE 354
            +  +  L+ +++ YN L++
Sbjct: 302 HVDKIKHLKFINMKYNYLSD 321

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 33/136 (24%), Positives = 49/136 (36%), Gaps = 18/136 (13%)

Query: 517 ELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCF----SLEILALSNN 572
            L L  N      P  F  +  L+ L + +NQL   +P     G F     L +L L  N
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPV----GVFDSLTQLTVLDLGTN 98

Query: 573 RLQ----GHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPR 628
           +L       +F     L +L  L +  N    E+P  + +   L  L L  N L      
Sbjct: 99  QLTVLPSA-VFD---RLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHG 153

Query: 629 WLGNLPTLQYIIMPNN 644
               L +L +  +  N
Sbjct: 154 AFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 5/123 (4%)

Query: 255 NKHTILDQGLCQ-LVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLC 313
           N+ T L+ G+   L++L+ LY+  N L         ++T L VL   +NQLT  +   + 
Sbjct: 50  NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVF 108

Query: 314 E-LVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELIL 372
           + LV L++L++  N L   LP  +  LT L  L +  NQL ++I   +   L+S+    L
Sbjct: 109 DRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHAYL 166

Query: 373 SNN 375
             N
Sbjct: 167 FGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 16/139 (11%)

Query: 292 TSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCL-ANLTSLRVLDVSYN 350
           T+ Q+LY   NQ+T         L+ L++LY+ +N L  +LP+ +  +LT L VLD+  N
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTN 98

Query: 351 QLTENISSSSLM-----HLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTE 405
           QLT       L       L  ++EL +  N   ++P  +E L +L+ L     ++ +   
Sbjct: 99  QLT------VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH 152

Query: 406 SHYDSLTPKFQLTSISLSG 424
             +D L+    LT   L G
Sbjct: 153 GAFDRLS---SLTHAYLFG 168

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 49/215 (22%), Positives = 89/215 (41%), Gaps = 52/215 (24%)

Query: 6   FTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLG---GLS 62
                 ++ +  + +        +S++ +  L N+++L L  N         +     L+
Sbjct: 37  QNELNSIDQIIANNS------DIKSVQGIQYLPNVRYLALGGNK-----LHDISALKELT 85

Query: 63  SLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKD-FRGLRKLNTLYLGG 121
           +L +L L  N+L  S+     + L+NL+EL +  N +++L  P   F  L  L  L L  
Sbjct: 86  NLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSL--PDGVFDKLTNLTYLNL-- 140

Query: 122 SGIPRIDGSKVLQSI-----GSLPSLKTLYLSHTKFKG--TVVNQKLHNFTNLEELILDE 174
                      LQS+       L +L  L LS+ + +     V  KL   T L++L    
Sbjct: 141 -------AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL---TQLKDL---- 186

Query: 175 SDLHVSQLLQSI-----ASFTSLKHLSMQ----DC 200
             L+ +Q L+S+        TSL+++ +     DC
Sbjct: 187 -RLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDC 219

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 45/191 (23%), Positives = 82/191 (42%), Gaps = 37/191 (19%)

Query: 226 QVDVNTNFLQIV--GESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLR-- 281
           + ++    +        + S++ +   NS +     +      L +++ L +  N L   
Sbjct: 23  KANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQY----LPNVRYLALGGNKLHDI 78

Query: 282 ---DGLPWCLANMTSLQVLYASSNQLTGNISPGLCE-LVLLRKLYIDNNDLRGSLPL-CL 336
                L       T+L  L  + NQL  ++  G+ + L  L++L +  N L+ SLP    
Sbjct: 79  SALKEL-------TNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVF 129

Query: 337 ANLTSLRVLDVSYNQLTENISSSSLM-----HLTSIEELILSNNHFFQIPISLEPLFN-L 390
             LT+L  L++++NQL       SL       LT++ EL LS N    +P   E +F+ L
Sbjct: 130 DKLTNLTYLNLAHNQLQ------SLPKGVFDKLTNLTELDLSYNQLQSLP---EGVFDKL 180

Query: 391 SKLQTFNGEIN 401
           ++L+      N
Sbjct: 181 TQLKDLRLYQN 191

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 48/172 (27%), Positives = 72/172 (41%), Gaps = 34/172 (19%)

Query: 464 TNLETLLLANNSL--FGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLS 521
            N+  L L  N L    +          L  L +  N  Q  +P  +   L  L EL L 
Sbjct: 63  PNVRYLALGGNKLHDISAL----KELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLV 117

Query: 522 RNAFNGSIPSS-FADMKMLERLDISNNQLTGEIPERMATGCF----SLEILALSNNRLQ- 575
            N    S+P   F  +  L  L++++NQL   +P+    G F    +L  L LS N+LQ 
Sbjct: 118 ENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPK----GVFDKLTNLTELDLSYNQLQS 171

Query: 576 ---GHIFSEKFNLTNLMTLQLDGNNFIGEIPE----SLSKCYMLRGLYLSDN 620
              G +F     LT L  L+L   N +  +P+     L+    L+ ++L DN
Sbjct: 172 LPEG-VFD---KLTQLKDLRLY-QNQLKSVPDGVFDRLTS---LQYIWLHDN 215

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 53/319 (16%), Positives = 95/319 (29%), Gaps = 63/319 (19%)

Query: 194 HLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSS 253
           H   Q+     +      L+  NL  + M  V+    T    ++G    +L+ ++L +  
Sbjct: 58  HYEFQNQRF--SAEVLSSLRQLNLAGVRMTPVKC---TVVAAVLGSGRHALDEVNLASCQ 112

Query: 254 LNKHTILDQGLCQLV----HLQGLYIRDNDLRD--------GLPWCLANMTSLQVLYASS 301
           L+       GL  L+      + L ++ N L           L   L +   +  L  S+
Sbjct: 113 LD-----PAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL---LHDQCQITTLRLSN 164

Query: 302 NQLTGN----ISPGLCELVLLRKLYIDNNDLR--GSLPLC--LANLTSLRVLDVSYNQLT 353
           N LT      +  GL     +  L + +  L   G   L   L     L+ L+V+YN   
Sbjct: 165 NPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224

Query: 354 ENIS---SSSLMHLTSIEELILSNNHF-----FQIPISLEPLFNLSKLQTFNGEINAQTE 405
           +  +   + +     S+E L L  N         +          +++     E  A +E
Sbjct: 225 DTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284

Query: 406 SHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWL------ 459
                L+              +                + L   +L       L      
Sbjct: 285 YWSVILS--------------EVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKA 330

Query: 460 --LENNTNLETLLLANNSL 476
             L     +  LL    S 
Sbjct: 331 QLLRVEGEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 57/350 (16%), Positives = 112/350 (32%), Gaps = 62/350 (17%)

Query: 3   ASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLS 62
           A L  P + L++L+ +   I   +     + L     L  L+ +   F N  FS    LS
Sbjct: 16  AQLGCPIKNLDALENA-QAIKKKLGKLGRQVLPPSELLDHLFFH-YEFQNQRFS-AEVLS 72

Query: 63  SLRHLSLADNRLNGSIDIKGL-----NSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTL 117
           SLR L+LA  R+   +    +     +    L+E+++    ++   +        +   L
Sbjct: 73  SLRQLNLAGVRM-TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKL 131

Query: 118 YLGGSGIPRIDGSKVLQSIGSL-----PSLKTLYLSHTKFKGTVVN---QKLHNFTNLEE 169
            L  + +    G +  + +  L       + TL LS+       V    + L   T++  
Sbjct: 132 GLQLNSL----GPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTH 187

Query: 170 LILDE---SDLHVSQLLQSIASFTSLKHLSMQDCVL--KGALHGQDFLKF-KNLEYLDMG 223
           L L      D  +  L   +     L+ L++         AL      +   +LE L + 
Sbjct: 188 LSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLY 247

Query: 224 WVQVDVNTNFLQIVG-----------ESMPSLNFLSLTNSSL-------------NKHTI 259
           +       N L   G           E    +       +++             N ++ 
Sbjct: 248 F-------NELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSW 300

Query: 260 LDQGLCQLVHLQGLYIRDNDLRDGLPWCLANM----TSLQVLYASSNQLT 305
               + + + L    + D+      PW  A +      ++ L        
Sbjct: 301 DRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 30/179 (16%), Positives = 58/179 (32%), Gaps = 24/179 (13%)

Query: 515 LMELNLSRNAFNGSIPSSFADM-----KMLERLDISNNQLTGEIPERMATGCFSLEILAL 569
           L +LNL+         +  A +       L+ +++++ QL       +         L L
Sbjct: 74  LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGL 133

Query: 570 SNNRLQ---GHIFSE--KFNLTNLMTLQLDGNNFIGE-----IPESLSKCYMLRGLYLSD 619
             N L         +    +   + TL+L  N  +       + E L+    +  L L  
Sbjct: 134 QLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLH 192

Query: 620 NHLFGK----IPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQ----RDSLKILDLSNNSI 670
             L  +    +   L     LQ + +  N       +   +      SL++L L  N +
Sbjct: 193 TGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 30/202 (14%), Positives = 60/202 (29%), Gaps = 23/202 (11%)

Query: 443 SVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGS-----FRMPIHSHQKLATLDVFN 497
            ++    +   +   +  E  ++L  L LA   +          +       L  +++ +
Sbjct: 51  LLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLAS 110

Query: 498 NFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADM-----KMLERLDISNNQLTGE 552
                     +        +L L  N+          D+       +  L +SNN LT  
Sbjct: 111 CQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAA 170

Query: 553 IPERMATG---CFSLEILALSNNRLQ---GHIFSE--KFNLTNLMTLQLDGNNFIGE--- 601
               +  G     S+  L+L +  L      + +     N   L  L +  N        
Sbjct: 171 GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN-RQLQELNVAYNGAGDTAAL 229

Query: 602 -IPESLSKCYMLRGLYLSDNHL 622
            +  +  +   L  L+L  N L
Sbjct: 230 ALARAAREHPSLELLHLYFNEL 251

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 34/186 (18%), Positives = 56/186 (30%), Gaps = 23/186 (12%)

Query: 438 QHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPI-----HSHQKLAT 492
           +H L+ VNL+   L       LL        L L  NSL       +     H   ++ T
Sbjct: 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITT 159

Query: 493 LDVFNNFFQGHIPVEIGTYL---PGLMELNLSRNAFNGSIPSSFADM----KMLERLDIS 545
           L + NN         +   L     +  L+L             A      + L+ L+++
Sbjct: 160 LRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA 219

Query: 546 NNQLTGEIPERMATG---CFSLEILALSNNRLQ-------GHIFSEKFNLTNLMTLQLDG 595
            N         +A       SLE+L L  N L          +         ++    + 
Sbjct: 220 YNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTE- 278

Query: 596 NNFIGE 601
              + E
Sbjct: 279 GTAVSE 284

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 5/106 (4%)

Query: 493 LDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSS-FADMKMLERLDISNNQLTG 551
           L + +N         +   LP L++L L RN     I  + F     ++ L +  N++  
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK- 91

Query: 552 EIPERMATGCFSLEILALSNNRLQGHIFSEKF-NLTNLMTLQLDGN 596
           EI  +M  G   L+ L L +N++   +    F +L +L +L L  N
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 18/113 (15%)

Query: 517 ELNLSRNAFNGSIPSS--FADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRL 574
           EL L+ N     I S   F  +  L +L++  NQLT  I      G   ++ L L  N++
Sbjct: 33  ELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKI 90

Query: 575 Q---GHIFSEKFNLTNLMTLQLDGNNFIGEIPE----SLSKCYMLRGLYLSDN 620
           +     +F     L  L TL L  N  I  +       L+    L  L L+ N
Sbjct: 91  KEISNKMFL---GLHQLKTLNLYDNQ-ISCVMPGSFEHLNS---LTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 20/115 (17%)

Query: 540 ERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQG---HIFSEKFNLTNLMTLQLDGN 596
             L +++N+L     + +      L  L L  N+L G   + F      +++  LQL  N
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE---GASHIQELQLGEN 88

Query: 597 NFIGEIPE----SLSKCYMLRGLYLSDNHLFGKIPRWLG---NLPTLQYIIMPNN 644
             I EI       L +   L+ L L DN +   +    G   +L +L  + + +N
Sbjct: 89  K-IKEISNKMFLGLHQ---LKTLNLYDNQI-SCVMP--GSFEHLNSLTSLNLASN 136

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 9/107 (8%)

Query: 292 TSLQVLYASSNQLTGNISPGLC-ELVLLRKLYIDNNDLRGSLPL-CLANLTSLRVLDVSY 349
           +S   L   SN+L  ++  G+  +L  L KL +  N ++ SLP      LT L +L +  
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHE 85

Query: 350 NQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLF-NLSKLQT 395
           N+L   + +     LT ++EL L  N    +P   + +F  L+ LQ 
Sbjct: 86  NKLQS-LPNGVFDKLTQLKELALDTNQLKSVP---DGIFDRLTSLQK 128

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 5/107 (4%)

Query: 271 QGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLC-ELVLLRKLYIDNNDLR 329
             L +  N L+         +T L  L  S NQ+  ++  G+  +L  L  LY+  N L+
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ 89

Query: 330 GSLPL-CLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNN 375
            SLP      LT L+ L +  NQL +++       LTS++++ L  N
Sbjct: 90  -SLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 134

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 255 NKHTILDQGLCQ-LVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLC 313
           N    L  G+   L  L  LY+  N L+         +TSL  L  S+NQL  ++  G+ 
Sbjct: 38  NSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVF 96

Query: 314 E-LVLLRKLYIDNNDLRGSLPL-CLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELI 371
           + L  L++L ++ N L+ SLP      LT L+ L +  NQL +++       LTS++ + 
Sbjct: 97  DKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIW 154

Query: 372 LSNN 375
           L +N
Sbjct: 155 LHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 17/136 (12%)

Query: 517 ELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQG 576
            L+L  N+        F ++  L +L +  N+L   +P  +     SL  L LS N+LQ 
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 577 ---HIFSEKFNLTNLMTLQLDGNNFIGEIPE----SLSKCYMLRGLYLSDNHLFGKIPR- 628
               +F     LT L  L L+ N  +  +P+     L++   L+ L L  N L   +P  
Sbjct: 91  LPNGVFD---KLTQLKELALNTNQ-LQSLPDGVFDKLTQ---LKDLRLYQNQL-KSVPDG 142

Query: 629 WLGNLPTLQYIIMPNN 644
               L +LQYI + +N
Sbjct: 143 VFDRLTSLQYIWLHDN 158

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 15/91 (16%)

Query: 292 TSLQVLYASSNQLTGNISPGLC-ELVLLRKLYIDNNDLRGSLPL-CLANLTSLRVLDVSY 349
           T  Q L+ ++NQ+T  + PG+   LV L++LY ++N L  ++P      LT L  LD++ 
Sbjct: 33  TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLND 90

Query: 350 NQLTENISSSSLMH-----LTSIEELILSNN 375
           N L       S+       L S+  + L NN
Sbjct: 91  NHLK------SIPRGAFDNLKSLTHIYLYNN 115

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 12/98 (12%), Positives = 36/98 (36%), Gaps = 9/98 (9%)

Query: 4   SLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLND-NHFNNSIFSSLGGLS 62
           +      +++++D + + I     +   + +  L  ++ + L   ++  +     L  L 
Sbjct: 55  TGPLDKYKIQAIDATDSCI----MSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLE 110

Query: 63  ----SLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTG 96
               S+  + +          I  L+   NL+ L ++ 
Sbjct: 111 NLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSD 148

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 5/86 (5%)

Query: 292 TSLQVLYASSNQLTGNISPGLC-ELVLLRKLYIDNNDLRGSLPL-CLANLTSLRVLDVSY 349
           T+ QVLY   NQ+T  + PG+   L  L +L +DNN L   LP      LT L  L ++ 
Sbjct: 30  TTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLND 87

Query: 350 NQLTENISSSSLMHLTSIEELILSNN 375
           NQL  +I   +  +L S+  + L NN
Sbjct: 88  NQLK-SIPRGAFDNLKSLTHIWLLNN 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1037
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-15
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-07
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.002
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-06
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.004
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-04

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 92.4 bits (228), Expect = 2e-20
 Identities = 69/387 (17%), Positives = 134/387 (34%), Gaps = 29/387 (7%)

Query: 289 ANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVS 348
             +            +T  +S    +L  +  L  D   ++ S+   +  L +L  ++ S
Sbjct: 19  TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFS 74

Query: 349 YNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHY 408
            NQLT+     +L  L  I            +                      +  ++ 
Sbjct: 75  NNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134

Query: 409 D-------SLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLE 461
           +       +++    L+ ++    +  G     L    +L ++    ++ +      +L 
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194

Query: 462 NNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLS 521
             TNLE+L+  NN +      P+     L  L +  N  +    +     L  L +L+L+
Sbjct: 195 KLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLA 249

Query: 522 RNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSE 581
            N  +   P   + +  L  L +  NQ++   P    T   +     L  N  Q    S 
Sbjct: 250 NNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTN-----LELNENQLEDISP 302

Query: 582 KFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIM 641
             NL NL  L L  NN     P  +S    L+ L+ ++N +       L NL  + ++  
Sbjct: 303 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSA 358

Query: 642 PNNNLEGPIPIEFCQRDSLKILDLSNN 668
            +N +    P+    R  +  L L++ 
Sbjct: 359 GHNQISDLTPLANLTR--ITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.0 bits (188), Expect = 2e-15
 Identities = 73/387 (18%), Positives = 132/387 (34%), Gaps = 44/387 (11%)

Query: 37  LTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTG 96
           L       L   +  +++  S   L  +  L      +     I G+  L+NL +++ + 
Sbjct: 21  LAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSN 75

Query: 97  NAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTV 156
           N + ++      + L KL  + +  + I  I     L ++  L             K   
Sbjct: 76  NQLTDIT---PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 157 VNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKN 216
              +L   +N    I   S L   Q L      T LK L+    + +  +          
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 217 LEYLDMGWVQVDVNTNFLQIVGE-SMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYI 275
           L  L      +  N     I     + +L+ LSL  + L         L  L +L  L +
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI----GTLASLTNLTDLDL 248

Query: 276 RDNDLRDGLPWCLANMTSLQVLYASSNQLTGNIS--------------------PGLCEL 315
            +N + +  P     +T L  L   +NQ++                          +  L
Sbjct: 249 ANNQISNLAPLS--GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 306

Query: 316 VLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNN 375
             L  L +  N++    P+   +LT L+ L  + N+++     SSL +LT+I  L   +N
Sbjct: 307 KNLTYLTLYFNNISDISPVS--SLTKLQRLFFANNKVS---DVSSLANLTNINWLSAGHN 361

Query: 376 HFFQIPISLEPLFNLSKLQTFNGEINA 402
               +     PL NL+++        A
Sbjct: 362 QISDLT----PLANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 76.2 bits (186), Expect = 4e-15
 Identities = 62/406 (15%), Positives = 121/406 (29%), Gaps = 43/406 (10%)

Query: 512 LPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSN 571
           L   M+  L +     ++  S  D+  +  L      +   I         +L  +  SN
Sbjct: 21  LAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSN 75

Query: 572 NRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLG 631
           N+L          L NL  L     N       +              N+    I     
Sbjct: 76  NQLTDIT-----PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 130

Query: 632 NLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKN 691
                +  +  N   +            L   +   +       +      I    +S  
Sbjct: 131 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 190

Query: 692 KIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ 751
            +  +L        +L +L  + N +    P  I     L+ L L  N +K      L  
Sbjct: 191 SVLAKL-------TNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLAS 239

Query: 752 LKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPP 811
           L  +  +DL++N +S  + P    T L E   G    ++I                    
Sbjct: 240 LTNLTDLDLANNQISN-LAPLSGLTKLTELKLGANQISNIS---------------PLAG 283

Query: 812 MGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNL 871
           +     ++     +        L +++ + L  N ++   P  +  LT++  L  ++N +
Sbjct: 284 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV 341

Query: 872 TGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYN 917
           +    ++ +NL  I  L   +N +    P  L  L  +    +   
Sbjct: 342 SD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 73.5 bits (179), Expect = 3e-14
 Identities = 65/378 (17%), Positives = 130/378 (34%), Gaps = 26/378 (6%)

Query: 9   FQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLS 68
             +     L   N+   V        + L  +  L  +     +     +  L++L  ++
Sbjct: 21  LAEKMKTVLGKTNVTDTVS------QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 72

Query: 69  LADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRID 128
            ++N+L     +K L  L ++   +     I  L    +  GL   N        +  + 
Sbjct: 73  FSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 129 GSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIAS 188
               L+   +  S  +     T  +      ++ +   L  L   E     S  +  I+ 
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 189 FTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLS 248
              L +L                    NL+ L +   Q+        +   +   L    
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 252

Query: 249 LTN----SSLNKHTILDQGLCQLVHLQGLY-------IRDNDLRDGLPWCLANMTSLQVL 297
           ++N    S L K T L  G  Q+ ++  L        +  N+ +      ++N+ +L  L
Sbjct: 253 ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 312

Query: 298 YASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENIS 357
               N ++      +  L  L++L+  NN +       LANLT++  L   +NQ+++   
Sbjct: 313 TLYFNNISD--ISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLT- 367

Query: 358 SSSLMHLTSIEELILSNN 375
              L +LT I +L L++ 
Sbjct: 368 --PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.2 bits (173), Expect = 2e-13
 Identities = 83/440 (18%), Positives = 155/440 (35%), Gaps = 75/440 (17%)

Query: 85  SLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKT 144
           +L+   +  +    + + V   D   L ++ TL     GI  IDG      +  L +L  
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGIKSIDG------VEYLNNLTQ 70

Query: 145 LYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKG 204
           +  S+ +         L N T L +++++ + +                        L G
Sbjct: 71  INFSNNQLTDI---TPLKNLTKLVDILMNNNQIAD-------------ITPLANLTNLTG 114

Query: 205 ALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGL 264
                + +   +         ++++++N +  +       +   L+  +          L
Sbjct: 115 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK---PL 171

Query: 265 CQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYID 324
             L  L+ L I  N + D     LA +T+L+ L A++NQ++     G+     L +L ++
Sbjct: 172 ANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTN--LDELSLN 227

Query: 325 NNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISL 384
            N L+      LA+LT+L  LD++ NQ++     S L  LT   EL L  N    I    
Sbjct: 228 GNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLT---ELKLGANQISNIS--- 279

Query: 385 EPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSV 444
            PL  L+ L       N   +                               +  +L  +
Sbjct: 280 -PLAGLTALTNLELNENQLEDISPI--------------------------SNLKNLTYL 312

Query: 445 NLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHI 504
            L   N+S   P   + + T L+ L  ANN +       + +   +  L   +N      
Sbjct: 313 TLYFNNISDISP---VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLT 367

Query: 505 PVEIGTYLPGLMELNLSRNA 524
           P+     L  + +L L+  A
Sbjct: 368 PLA---NLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.3 bits (137), Expect = 5e-09
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 11/93 (11%)

Query: 6   FTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLR 65
            +  + L  L L +NNI+       +  +S LT L+ L+  +N    S  SSL  L+++ 
Sbjct: 303 ISNLKNLTYLTLYFNNISD------ISPVSSLTKLQRLFFANNKV--SDVSSLANLTNIN 354

Query: 66  HLSLADNRLNGSIDIKGLNSLSNLEELDMTGNA 98
            LS   N+++       L +L+ + +L +   A
Sbjct: 355 WLSAGHNQISDLTP---LANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 9e-06
 Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 24/132 (18%)

Query: 6   FTPFQQLESLDLSWNNIAGCVQNESLERLS----------------RLTNLKFLYLNDNH 49
            +   +L  L L  N I+       L  L+                 L NL +L L  N+
Sbjct: 259 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 318

Query: 50  FNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFR 109
            ++     +  L+ L+ L  A+N+++    +  L +L+N+  L    N I +L       
Sbjct: 319 ISDIS--PVSSLTKLQRLFFANNKVSD---VSSLANLTNINWLSAGHNQISDLT---PLA 370

Query: 110 GLRKLNTLYLGG 121
            L ++  L L  
Sbjct: 371 NLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 44/314 (14%), Positives = 97/314 (30%), Gaps = 30/314 (9%)

Query: 632 NLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKN 691
            L      ++   N+   +       D +  L      I  ++       ++ Q++ S N
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI-KSIDGVEYLNNLTQINFSNN 76

Query: 692 KIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQL-NYLLLAHNYIKGEIPVQLC 750
           ++     + + +   LV + ++ N +    P                   I     +   
Sbjct: 77  QLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134

Query: 751 QLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSP 810
              E+    +S  +    +      +  N+    +         R  +  +         
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194

Query: 811 PMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNN 870
            +   E++  T   +S      ILT++  + L+ N+L       +  LT +  L+L++N 
Sbjct: 195 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQ 252

Query: 871 LTGTIPTTFSNLKQIESLDLSYNLLHGKIP--------------------PQLIVLNTLE 910
           ++   P   S L ++  L L  N +    P                      +  L  L 
Sbjct: 253 ISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLT 310

Query: 911 VFKVAYNNLSGKIP 924
              + +NN+S   P
Sbjct: 311 YLTLYFNNISDISP 324

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 88.3 bits (217), Expect = 2e-19
 Identities = 60/262 (22%), Positives = 98/262 (37%), Gaps = 5/262 (1%)

Query: 515 LMELNLSRNAFNG--SIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNN 572
           +  L+LS         IPSS A++  L  L I                   L  L +++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 573 RLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGN 632
            + G I      +  L+TL    N   G +P S+S    L G+    N + G IP   G+
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 633 LPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNK 692
              L   +  + N             +L  +DLS N + G     F      Q       
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 693 IEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQL 752
                   +  + +L  LDL  N ++G++P  + +L  L+ L ++ N + GEIP Q   L
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNL 290

Query: 753 KEVRLIDLSHNNL--SGRIPPC 772
           +   +   ++N       +P C
Sbjct: 291 QRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 81.0 bits (198), Expect = 5e-17
 Identities = 54/292 (18%), Positives = 102/292 (34%), Gaps = 39/292 (13%)

Query: 663 LDLSNNSIFGTLP---SCFSPASIEQVHLSKN-KIEGRLESIIHDNPHLVTLDLSYNSLH 718
           LDLS  ++    P   S  +   +  +++     + G +   I     L  L +++ ++ 
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 719 GSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSL 778
           G+IP+ + ++  L  L  ++N + G +P  +  L  +  I    N +SG IP    + S 
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 779 NEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMS 838
                             +           S  M + +       + +            
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL------ 228

Query: 839 GIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 898
                          ++G    ++ L+L +N + GT+P   + LK + SL++S+N     
Sbjct: 229 -----AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN----- 278

Query: 899 IPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGQPLSK 950
                              NL G+IP       F+  +Y  N  LCG PL  
Sbjct: 279 -------------------NLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 79.4 bits (194), Expect = 2e-16
 Identities = 53/274 (19%), Positives = 94/274 (34%), Gaps = 16/274 (5%)

Query: 631 GNLPTLQYIIMPNNNLEG--PIPIEFCQRDSLKILDLSN--NSIFGTLPSCFSPASIEQV 686
                +  + +   NL    PIP        L  L +    N +    P+      +  +
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 687 HLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIP 746
           +++   + G +   +     LVTLD SYN+L G++P  I  LP L  +    N I G IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 747 VQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPG 806
                  ++        N      P                    +   +          
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFAN-----------LNLAFVDLSRNMLEGDASV 215

Query: 807 QSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNL 866
                   ++             +  +  +++G+DL  N++ G +P  +  L  +H+LN+
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 867 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIP 900
           S NNL G IP    NL++ +    + N      P
Sbjct: 276 SFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 78.6 bits (192), Expect = 3e-16
 Identities = 56/244 (22%), Positives = 84/244 (34%), Gaps = 2/244 (0%)

Query: 539 LERLDISNNQLTGEIPERMATGCFS-LEILALSNN-RLQGHIFSEKFNLTNLMTLQLDGN 596
           +  LD+S   L    P   +      L  L +     L G I      LT L  L +   
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 597 NFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQ 656
           N  G IP+ LS+   L  L  S N L G +P  + +LP L  I    N + G IP  +  
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 657 RDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNS 716
              L      + +                       +     S++  +           +
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 717 LHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNT 776
                  ++     LN L L +N I G +P  L QLK +  +++S NNL G IP      
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291

Query: 777 SLNE 780
             + 
Sbjct: 292 RFDV 295

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 58.2 bits (139), Expect = 2e-09
 Identities = 57/301 (18%), Positives = 92/301 (30%), Gaps = 30/301 (9%)

Query: 356 ISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFN-GEINAQTESHYDSLTPK 414
           +   +      +  L LS  +  +       L NL  L     G IN        ++   
Sbjct: 41  VLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL 100

Query: 415 FQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANN 474
            QL  + ++     G  P+FL     L +++ S+  LSG  P   + +  NL  +    N
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGN 159

Query: 475 SLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFA 534
            + G+      S  KL T    +                            N        
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISR---------------------------NRLTGKIPP 192

Query: 535 DMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLD 594
               L    +  ++   E    +  G                    +     NL  L L 
Sbjct: 193 TFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR 252

Query: 595 GNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEF 654
            N   G +P+ L++   L  L +S N+L G+IP+  GNL         NN      P+  
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPA 311

Query: 655 C 655
           C
Sbjct: 312 C 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 54.0 bits (128), Expect = 3e-08
 Identities = 46/269 (17%), Positives = 82/269 (30%), Gaps = 52/269 (19%)

Query: 335 CLANLTSLRV--LDVSYNQLTENIS-SSSLMHLTSIEELILSNNHFFQIPISLEPLFNLS 391
           C  +  + RV  LD+S   L +     SSL +L  +  L +   +    PI        +
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL-T 101

Query: 392 KLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNL 451
           +L          + +  D L+    L ++  S     GT P  +    +L  +      +
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 452 SGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATL------------------ 493
           SG  P+     +    ++ ++ N L G       +                         
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 494 ----------------------------DVFNNFFQGHIPVEIGTYLPGLMELNLSRNAF 525
                                       D+ NN   G +P  +   L  L  LN+S N  
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNL 280

Query: 526 NGSIPSSFADMKMLERLDISNNQLTGEIP 554
            G IP    +++  +    +NN+     P
Sbjct: 281 CGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 50.9 bits (120), Expect = 3e-07
 Identities = 40/268 (14%), Positives = 77/268 (28%), Gaps = 12/268 (4%)

Query: 110 GLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEE 169
              ++N L L G  +P+     +  S+ +LP L  LY+         +   +   T L  
Sbjct: 48  QTYRVNNLDLSGLNLPKP--YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 170 LILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDV 229
           L +  +++  +                     L  + +        ++  L         
Sbjct: 106 LYITHTNVSGA--------IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157

Query: 230 NTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLA 289
                  + +S  S + L  + +                          ++ +G    L 
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLF 217

Query: 290 NMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSY 349
                      +          +     L  L + NN + G+LP  L  L  L  L+VS+
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277

Query: 350 NQLTENISSSSLMHLTSIEELILSNNHF 377
           N L   I      +L   +    +NN  
Sbjct: 278 NNLCGEIPQGG--NLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 46.3 bits (108), Expect = 1e-05
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 38  TNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGN 97
            NL  L L +N    ++   L  L  L  L+++ N L G   I    +L   +      N
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE--IPQGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.5 bits (106), Expect = 2e-05
 Identities = 51/297 (17%), Positives = 90/297 (30%), Gaps = 37/297 (12%)

Query: 56  SSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLN 115
            +      + +L L+   L     I                        P     L  LN
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPI------------------------PSSLANLPYLN 79

Query: 116 TLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDES 175
            LY+GG          +  +I  L  L  LY++HT   G + +      T +       +
Sbjct: 80  FLYIGGINNLVGP---IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136

Query: 176 DLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQ 235
                    SI+S  +L  ++     + GA+        K        +  + ++ N L 
Sbjct: 137 LSGTLP--PSISSLPNLVGITFDGNRISGAIPDSYGSFSKL-------FTSMTISRNRLT 187

Query: 236 IVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQ 295
                  +   L+  + S N        L              +        +    +L 
Sbjct: 188 GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN 247

Query: 296 VLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQL 352
            L   +N++ G +  GL +L  L  L +  N+L G +P    NL    V   + N+ 
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.5 bits (106), Expect = 2e-05
 Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 274 YIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLP 333
            +R+N +   LP  L  +  L  L  S N L G I P    L         NN      P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSP 308

Query: 334 L 334
           L
Sbjct: 309 L 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.4 bits (103), Expect = 5e-05
 Identities = 59/268 (22%), Positives = 98/268 (36%), Gaps = 10/268 (3%)

Query: 266 QLVHLQGLYIRDNDLRDG--LPWCLANMTSLQVLYASSN-QLTGNISPGLCELVLLRKLY 322
           Q   +  L +   +L     +P  LAN+  L  LY      L G I P + +L  L  LY
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 323 IDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPI 382
           I + ++ G++P  L+ + +L  LD SYN         S+  L ++  +    N       
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNA-LSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 383 SLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLN 442
                 + SKL T       +             L  + LS  +  G          +  
Sbjct: 167 DSY--GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 443 SVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQG 502
            ++L+  +L+ +        + NL  L L NN ++G+    +   + L +L+V  N   G
Sbjct: 225 KIHLAKNSLAFDLGKV--GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 503 HIPVEIGTYLPGLMELNLSRNAFNGSIP 530
            IP   G  L        + N      P
Sbjct: 283 EIPQ--GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.0 bits (102), Expect = 5e-05
 Identities = 58/261 (22%), Positives = 94/261 (36%), Gaps = 23/261 (8%)

Query: 244 LNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDND-LRDGLPWCLANMTSLQVLYASSN 302
           +N L L+  +L K   +   L  L +L  LYI   + L   +P  +A +T L  LY +  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 303 QLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLM 362
            ++G I   L ++  L  L    N L G+LP  +++L +L  +    N+++  I  S   
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 363 HLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKF------- 415
                  + +S N             NL+ +      +       + S            
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 416 -------------QLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLEN 462
                         L  + L      GT P+ L     L+S+N+S  NL GE P     N
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGN 289

Query: 463 NTNLETLLLANNSLFGSFRMP 483
               +    ANN       +P
Sbjct: 290 LQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.5 bits (93), Expect = 8e-04
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 16  DLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRL 74
           DL  N I G +       L++L  L  L ++ N+    I    G L      + A+N+ 
Sbjct: 250 DLRNNRIYGTLPQG----LTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKC 303

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.9 bits (208), Expect = 2e-18
 Identities = 52/266 (19%), Positives = 81/266 (30%), Gaps = 8/266 (3%)

Query: 503 HIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCF 562
            +PV I         + L  N  +    +SF   + L  L + +N L             
Sbjct: 25  AVPVGIPAAS---QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 563 SLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHL 622
             ++    N +L+    +    L  L TL LD        P        L+ LYL DN L
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141

Query: 623 FGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPAS 682
                    +L  L ++ +  N +       F    SL  L L  N +    P  F    
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 683 IEQVHL-SKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYI 741
                    N +       +     L  L L+ N        R      L     + + +
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEV 260

Query: 742 KGEIPVQLCQLKEVRLIDLSHNNLSG 767
              +P    +L    L  L+ N+L G
Sbjct: 261 PCSLPQ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (182), Expect = 4e-15
 Identities = 54/257 (21%), Positives = 87/257 (33%), Gaps = 5/257 (1%)

Query: 439 HDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNN 498
                + L    +S            NL  L L +N L             L  LD+ +N
Sbjct: 32  AASQRIFLHGNRISHVPAASF-RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 499 FFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMA 558
                +       L  L  L+L R       P  F  +  L+ L + +N L   +P+   
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTF 149

Query: 559 TGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLS 618
               +L  L L  NR+          L +L  L L  N      P +      L  LYL 
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 619 DNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCF 678
            N+L       L  L  LQY+ + +N               L+    S++ +  +LP   
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQKFRGSSSEVPCSLPQRL 268

Query: 679 SPASIEQVHLSKNKIEG 695
           +   +++  L+ N ++G
Sbjct: 269 AGRDLKR--LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 1e-10
 Identities = 42/299 (14%), Positives = 86/299 (28%), Gaps = 42/299 (14%)

Query: 601 EIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSL 660
            +P  +      + ++L  N +             L  + + +N L       F     L
Sbjct: 25  AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 661 KILDLSNNSIFGTL-PSCFSP-ASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLH 718
           + LDLS+N+   ++ P+ F     +  +HL +  ++     +      L  L L  N+L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 719 GSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSL 778
               +    L  L +L L  N I          L  +  + L  N ++   P    +   
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 779 NEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMS 838
               +                                  +     +         L ++ 
Sbjct: 203 LMTLY----------------------------------LFANNLSALPTEALAPLRALQ 228

Query: 839 GIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHG 897
            + L+ N    +          +     S + +  ++P     L   +   L+ N L G
Sbjct: 229 YLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 9e-07
 Identities = 40/247 (16%), Positives = 66/247 (26%), Gaps = 13/247 (5%)

Query: 703 DNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSH 762
            N   VT       L  ++P  I        + L  N I           + + ++ L  
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 763 NNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTT 822
           N L+          +L E               A+ +    L             +    
Sbjct: 66  NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL---------HTLHLDRCG 116

Query: 823 KNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNL 882
                    R L ++  + L  N L          L  +  L L  N ++      F  L
Sbjct: 117 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176

Query: 883 KQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEED-SYEGNP 941
             ++ L L  N +    P     L  L    +  NNLS    +        +      NP
Sbjct: 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236

Query: 942 FLCGQPL 948
           ++C    
Sbjct: 237 WVCDCRA 243

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 43/273 (15%), Positives = 88/273 (32%), Gaps = 25/273 (9%)

Query: 38  TNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGN 97
              + ++L+ N  ++   +S     +L  L L  N L               +       
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 98  AIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVV 157
            + ++  P  F GL +L+TL+L   G+  +             +L+ LYL     +  + 
Sbjct: 92  QLRSV-DPATFHGLGRLHTLHLDRCGLQELGPGLFRGL----AALQYLYLQDNALQA-LP 145

Query: 158 NQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNL 217
           +    +  NL  L L  + +          +F  L  L           H      F++L
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVP----ERAFRGLHSLDRLLLHQNRVAHVHPHA-FRDL 200

Query: 218 EYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLV----HLQGL 273
             L   ++  +  +         + +L +L L ++            C+       LQ  
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW-------VCDCRARPLWAWLQKF 253

Query: 274 YIRDNDLRDGLPWCLANMTSLQVLYASSNQLTG 306
               +++   LP     +    +   ++N L G
Sbjct: 254 RGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 8e-04
 Identities = 39/265 (14%), Positives = 78/265 (29%), Gaps = 12/265 (4%)

Query: 189 FTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLS 248
             + + + +    +   +    F   +NL  L +    +             +  L+   
Sbjct: 31  PAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 249 LTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNI 308
                    ++       L  L  L++    L++  P     + +LQ LY   N L    
Sbjct: 90  NAQLR----SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145

Query: 309 SPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIE 368
                +L  L  L++  N +          L SL  L +  N++      +       + 
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 369 ELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDG 428
             + +NN       +L PL  L  L+  +        +          L     S     
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA----WLQKFRGSSSEVP 261

Query: 429 GTFPEFLYHQHDLNSVNLSHLNLSG 453
            + P+ L      +   L+  +L G
Sbjct: 262 CSLPQRL---AGRDLKRLAANDLQG 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.6 bits (187), Expect = 1e-15
 Identities = 52/284 (18%), Positives = 87/284 (30%), Gaps = 16/284 (5%)

Query: 440 DLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNF 499
            L  V  S L L  + P  L     +   L L NN +         + + L TL + NN 
Sbjct: 11  HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 66

Query: 500 FQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMAT 559
                P      L  L  L LS+N            ++ L   +    ++   +   +  
Sbjct: 67  ISKISPGAFA-PLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL-- 123

Query: 560 GCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSD 619
               +  L  +  +  G        +  L  +++   N I  IP+ L     L  L+L  
Sbjct: 124 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPS--LTELHLDG 180

Query: 620 NHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFS 679
           N +       L  L  L  + +  N++             L+ L L+NN +         
Sbjct: 181 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 240

Query: 680 PASIEQVHLSKNKIEG------RLESIIHDNPHLVTLDLSYNSL 717
              I+ V+L  N I                      + L  N +
Sbjct: 241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.4 bits (176), Expect = 3e-14
 Identities = 44/313 (14%), Positives = 86/313 (27%), Gaps = 46/313 (14%)

Query: 586 TNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNN 645
            +   L L  N               L  L L +N +    P     L  L+ + +  N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 646 LEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNP 705
           L+            L++ +     +  ++ +  +   + ++  +  K  G          
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 706 HLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNL 765
            L  + ++  ++  +IP  +   P L  L L  N I       L  L  +  + LS N++
Sbjct: 151 KLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 766 SGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNM 825
           S      L NT                                       E      K +
Sbjct: 208 SAVDNGSLANTPHL-----------------------------------RELHLNNNKLV 232

Query: 826 SYYYQGRILTSMSGIDLSCNKLTG------EIPTQIGYLTRIHALNLSHNNLTGT--IPT 877
                      +  + L  N ++         P           ++L  N +      P+
Sbjct: 233 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 292

Query: 878 TFSNLKQIESLDL 890
           TF  +    ++ L
Sbjct: 293 TFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.9 bits (167), Expect = 4e-13
 Identities = 56/309 (18%), Positives = 95/309 (30%), Gaps = 41/309 (13%)

Query: 292 TSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQ 351
               +L   +N++T         L  L  L + NN +    P   A L  L  L +S NQ
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 352 LTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSL 411
           L E             +EL +  N   ++  S+    N   +          +       
Sbjct: 91  LKELPEKMPKTL----QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS------- 139

Query: 412 TPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLL 471
                            G           L+ + ++  N++            +L  L L
Sbjct: 140 -----------------GIENGAFQGMKKLSYIRIADTNITTIPQGLP----PSLTELHL 178

Query: 472 ANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPS 531
             N +       +     LA L +  N              P L EL+L+ N     +P 
Sbjct: 179 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLV-KVPG 236

Query: 532 SFADMKMLERLDISNNQLTG-----EIPERMATGCFSLEILALSNNRLQ-GHIFSEKFN- 584
             AD K ++ + + NN ++        P    T   S   ++L +N +Q   I    F  
Sbjct: 237 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 296

Query: 585 LTNLMTLQL 593
           +     +QL
Sbjct: 297 VYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.9 bits (167), Expect = 4e-13
 Identities = 44/237 (18%), Positives = 79/237 (33%), Gaps = 7/237 (2%)

Query: 542 LDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGE 601
           +  S+  L  ++P+ +        +L L NN++      +  NL NL TL L  N     
Sbjct: 15  VQCSDLGLE-KVPKDLPP---DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 602 IPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLK 661
            P + +    L  LYLS N L     +    L  L+        +   +     Q   ++
Sbjct: 71  SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 130

Query: 662 ILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSI 721
           +      S      +      +  + ++   I    + +    P L  L L  N +    
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVD 187

Query: 722 PNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSL 778
              +  L  L  L L+ N I       L     +R + L++N L         +  +
Sbjct: 188 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 244

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.2 bits (147), Expect = 1e-10
 Identities = 51/287 (17%), Positives = 103/287 (35%), Gaps = 20/287 (6%)

Query: 242 PSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASS 301
           P    L L N+ +    I D     L +L  L + +N +    P   A +  L+ LY S 
Sbjct: 31  PDTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 302 NQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSL 361
           NQL          L  LR    +   +R S+   L  +  + +           I + + 
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS--GIENGAF 146

Query: 362 MHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSIS 421
             +  +  + +++ +   IP  L        L   + + N  T+    SL     L  + 
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGL-----PPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 422 LSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSL----F 477
           LS           L +   L  ++L++  L          ++  ++ + L NN++     
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL--ADHKYIQVVYLHNNNISAIGS 259

Query: 478 GSFRMPIHSHQ--KLATLDVFNNFFQGHIPVEIGTY--LPGLMELNL 520
             F  P ++ +    + + +F+N  Q +  ++  T+  +     + L
Sbjct: 260 NDFCPPGYNTKKASYSGVSLFSNPVQ-YWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.1 bits (139), Expect = 2e-09
 Identities = 48/263 (18%), Positives = 92/263 (34%), Gaps = 17/263 (6%)

Query: 659 SLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLH 718
            L+++  S+  +   +P    P     + L  NKI    +    +  +L TL L  N + 
Sbjct: 11  HLRVVQCSDLGL-EKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 719 GSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSL 778
              P     L +L  L L+ N +K         L+E+R+ +     +   +   L    +
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV 128

Query: 779 NEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMS 838
            E     +  + I        +       +                        +  S++
Sbjct: 129 VELGTNPLKSSGIENGAFQGMKKLSYIRIAD--------------TNITTIPQGLPPSLT 174

Query: 839 GIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 898
            + L  NK+T      +  L  +  L LS N+++     + +N   +  L L+ N L  K
Sbjct: 175 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 233

Query: 899 IPPQLIVLNTLEVFKVAYNNLSG 921
           +P  L     ++V  +  NN+S 
Sbjct: 234 VPGGLADHKYIQVVYLHNNNISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.4 bits (132), Expect = 1e-08
 Identities = 35/251 (13%), Positives = 68/251 (27%), Gaps = 38/251 (15%)

Query: 705 PHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNN 764
           P    LDL  N +          L  L+ L+L +N I    P     L ++  + LS N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 765 LSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKN 824
           L                      P  +      +        +    +          + 
Sbjct: 91  LKE-------------------LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 131

Query: 825 MSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQ 884
            +                   K +G        + ++  + ++  N+T        +L  
Sbjct: 132 GTN----------------PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSL-- 173

Query: 885 IESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLC 944
              L L  N +       L  LN L    +++N++S         +    + +  N  L 
Sbjct: 174 -TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 232

Query: 945 GQPLSKSCNDN 955
             P   + +  
Sbjct: 233 KVPGGLADHKY 243

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.7 bits (125), Expect = 9e-08
 Identities = 51/291 (17%), Positives = 97/291 (33%), Gaps = 28/291 (9%)

Query: 38  TNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGN 97
            +   L L +N            L +L  L L +N+++          L  LE L ++ N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-GAFAPLVKLERLYLSKN 89

Query: 98  AIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGT-V 156
            ++ L   K  + L++L       + + +            L  +  + L     K + +
Sbjct: 90  QLKEL-PEKMPKTLQELRVHENEITKVRK-------SVFNGLNQMIVVELGTNPLKSSGI 141

Query: 157 VNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKN 216
            N        L  + +  +D +++ + Q +    SL  L +        +   D    K 
Sbjct: 142 ENGAFQGMKKLSYIRI--ADTNITTIPQGL--PPSLTELHLDGN----KITKVDAASLKG 193

Query: 217 LEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIR 276
           L  L    +  +  +        + P L  L L N+ L K      GL    ++Q +Y+ 
Sbjct: 194 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP---GGLADHKYIQVVYLH 250

Query: 277 DNDLRD------GLPWCLANMTSLQVLYASSNQLT-GNISPGLCELVLLRK 320
           +N++          P       S   +   SN +    I P     V +R 
Sbjct: 251 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 301

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.8 bits (120), Expect = 4e-07
 Identities = 49/288 (17%), Positives = 94/288 (32%), Gaps = 39/288 (13%)

Query: 12  LESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLAD 71
              LDL  N I      +       L NL  L L +N  +     +   L  L  L L+ 
Sbjct: 33  TALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 72  NRLNG--------------------SIDIKGLNSLSNLEELDMTGNAIENL-VVPKDFRG 110
           N+L                       +     N L+ +  +++  N +++  +    F+G
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 111 LRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEEL 170
           ++KL+ + +  + I  I         G  PSL  L+L   K         L    NL +L
Sbjct: 149 MKKLSYIRIADTNITTIPQ-------GLPPSLTELHLDGNKITKVDAAS-LKGLNNLAKL 200

Query: 171 ILDESDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQ---V 227
                +   +    S+A+   L+ L + +  L     G      K ++ + +       +
Sbjct: 201 G-LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH--KYIQVVYLHNNNISAI 257

Query: 228 DVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYI 275
             N            S + +SL ++ +    I       +     + +
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 23/123 (18%), Positives = 40/123 (32%)

Query: 833 ILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSY 892
           +    + +DL  NK+T         L  +H L L +N ++   P  F+ L ++E L LS 
Sbjct: 29  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 893 NLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGQPLSKSC 952
           N L          L  L V +     +   + +        E           +  +   
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 953 NDN 955
              
Sbjct: 149 MKK 151

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 6e-10
 Identities = 44/290 (15%), Positives = 89/290 (30%), Gaps = 21/290 (7%)

Query: 492 TLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTG 551
           TLD+        +   +     G++     R+  +  +   F+  + ++ +D+SN+ +  
Sbjct: 4   TLDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEV 60

Query: 552 EIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYM 611
                + + C  L+ L+L   RL   I +     +NL+ L L G +   E          
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 612 LRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIF 671
            R   L+ +  F    + +          +   NL G          S  +    N    
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 672 GTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSY-NSLHGSIPNRIDRLPQ 730
               S        Q                    +L  L LS    +       +  +P 
Sbjct: 181 DLSDSVMLKNDCFQ--------------EFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226

Query: 731 LNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNE 780
           L  L +      G + +    L  ++   ++ ++ +    P + N    E
Sbjct: 227 LKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 42/272 (15%), Positives = 82/272 (30%), Gaps = 7/272 (2%)

Query: 643 NNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGR-LESII 701
             NL   +      +  +       + +   L   FSP  ++ + LS + IE   L  I+
Sbjct: 9   GKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL 67

Query: 702 HDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLS 761
                L  L L    L   I N + +   L  L L+      E  +Q       RL +L+
Sbjct: 68  SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 127

Query: 762 HNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFT 821
            +          V  ++               R+           +  P +   +     
Sbjct: 128 LSWCFDFTEKH-VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 186

Query: 822 TKNMSYYYQGRILTSMSGIDLS-CNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFS 880
                 + +   L  +  + LS C  +  E   ++G +  +  L +      GT+     
Sbjct: 187 MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKE 246

Query: 881 NLKQIESLDLSYNLLHGKIPPQLIVLNTLEVF 912
            L     L ++ +       P +      E++
Sbjct: 247 ALPH---LQINCSHFTTIARPTIGNKKNQEIW 275

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 3e-06
 Identities = 36/302 (11%), Positives = 84/302 (27%), Gaps = 46/302 (15%)

Query: 14  SLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNR 73
           +LDL+  N+      +   RL     +       +  +  +         ++H+ L+++ 
Sbjct: 4   TLDLTGKNLHP----DVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSV 57

Query: 74  LNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVL 133
           +  S     L+  S L+ L + G  +                                ++
Sbjct: 58  IEVSTLHGILSQCSKLQNLSLEGLRL-----------------------------SDPIV 88

Query: 134 QSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLK 193
            ++    +L    L+ +   G          ++   L             + +    +  
Sbjct: 89  NTLAKNSNLV--RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 146

Query: 194 HLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNF-----LQIVGESMPSLNFLS 248
             ++    L G            L       V +D++ +             +  L  LS
Sbjct: 147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS 206

Query: 249 LTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNI 308
           L+         L + L ++  L+ L +        L      +  LQ+   + +  T   
Sbjct: 207 LSRCYDIIPETLLE-LGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI---NCSHFTTIA 262

Query: 309 SP 310
            P
Sbjct: 263 RP 264

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 1e-05
 Identities = 37/199 (18%), Positives = 71/199 (35%), Gaps = 5/199 (2%)

Query: 11  QLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLA 70
           +++ +DLS + I     +     LS+ + L+ L L     ++ I ++L   S+L  L+L+
Sbjct: 47  RVQHMDLSNSVIEV---STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 103

Query: 71  DNR-LNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDG 129
                +       L+S S L+EL+++          +            L  SG  +   
Sbjct: 104 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ 163

Query: 130 SKVLQSIGSLPSLKTLYL-SHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIAS 188
              L ++            S +        Q+      L+ L L      + + L  +  
Sbjct: 164 KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE 223

Query: 189 FTSLKHLSMQDCVLKGALH 207
             +LK L +   V  G L 
Sbjct: 224 IPTLKTLQVFGIVPDGTLQ 242

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 42/289 (14%), Positives = 95/289 (32%), Gaps = 38/289 (13%)

Query: 92  LDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTK 151
           LD+TG  +   V  +     + +       S +      + L    S   ++ + LS++ 
Sbjct: 5   LDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFM-----DQPLAEHFSPFRVQHMDLSNSV 57

Query: 152 FKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCV-LKGALHGQD 210
            + + ++  L   + L+ L L+   L    ++ ++A  ++L  L++  C           
Sbjct: 58  IEVSTLHGILSQCSKLQNLSLEGLRLS-DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 116

Query: 211 FLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHL 270
                 L+ L++ W       +    V     ++  L+L+    N               
Sbjct: 117 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS-------- 168

Query: 271 QGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDN-NDLR 329
                                  + +  + S  L  +      +L  L+ L +    D+ 
Sbjct: 169 --------------TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 214

Query: 330 GSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHL-TSIEELILSNNHF 377
               L L  + +L+ L V        +   +L  L  ++  L ++ +HF
Sbjct: 215 PETLLELGEIPTLKTLQVF-----GIVPDGTLQLLKEALPHLQINCSHF 258

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 4e-04
 Identities = 34/205 (16%), Positives = 65/205 (31%), Gaps = 8/205 (3%)

Query: 441 LNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFF 500
           +  ++LS+  +     + +L   + L+ L L    L       +  +  L  L++     
Sbjct: 48  VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 107

Query: 501 QGHIPV-EIGTYLPGLMELNL------SRNAFNGSIPSSFADMKMLERLDISNNQLTGEI 553
                +  + +    L ELNL      +      ++      +  L       N    ++
Sbjct: 108 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 167

Query: 554 PERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFI-GEIPESLSKCYML 612
              +      + +    +  L+   F E F L  L  L L     I  E    L +   L
Sbjct: 168 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 227

Query: 613 RGLYLSDNHLFGKIPRWLGNLPTLQ 637
           + L +      G +      LP LQ
Sbjct: 228 KTLQVFGIVPDGTLQLLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 13/86 (15%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 840 IDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI 899
           +DL+   L  ++  ++     I       + +   +   FS  + ++ +DLS +++    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIA-FRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62

Query: 900 PPQLIV-LNTLEVFKVAYNNLSGKIP 924
              ++   + L+   +    LS  I 
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIV 88

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (140), Expect = 2e-09
 Identities = 48/459 (10%), Positives = 107/459 (23%), Gaps = 27/459 (5%)

Query: 293 SLQVLYASSNQLTGNISPGLCE-LVLLRKLYIDNNDLRG----SLPLCLANLTSLRVLDV 347
            +Q L     +L+      L   L   + + +D+  L       +   L    +L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 348 SYNQLT----ENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQ 403
             N+L       +          I++L L N         +      +        ++  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 404 TESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENN 463
                        L             +        +  +  L       E      + N
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 464 TNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRN 523
                +L             +          V ++  +    +         + L  ++ 
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESC----GVTSDNCRDLCGIVASKASLRELALGSNKL 238

Query: 524 AFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKF 583
              G        +    RL        G   +     C  L                   
Sbjct: 239 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 298

Query: 584 NLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPN 643
               L    L+    +  +             + S      +    L          + +
Sbjct: 299 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI----SNNRLED 354

Query: 644 NNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPA-----SIEQVHLSKNKIEGR-- 696
             +             L++L L++  +  +  S  +       S+ ++ LS N +     
Sbjct: 355 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 414

Query: 697 ---LESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLN 732
              +ES+      L  L L        + +R+  L +  
Sbjct: 415 LQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (138), Expect = 3e-09
 Identities = 45/443 (10%), Positives = 109/443 (24%), Gaps = 29/443 (6%)

Query: 490 LATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNG----SIPSSFADMKMLERLDIS 545
           + +LD+           E+   L     + L            I S+      L  L++ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 546 NNQLTGE----IPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGE 601
           +N+L       + + + T    ++ L+L N  L G       +    +    + +     
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 602 IPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLK 661
           + ++  +      L         ++     +  + + +            +     D  +
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 662 ILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSI 721
                        P       +E   ++ +        +            S       +
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 722 PNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEG 781
                 L   +  L      +  I  + C      L               L +      
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 782 YHGEVAPTSIW---CRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRI----- 833
               + P         ++  + +AC    SS        ++    N      G       
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 834 ----LTSMSGIDLSCNKLTGE----IPTQIGYLTRIHALNLSHNNLTGTIPTTFS----- 880
                + +  + L+   ++      +   +     +  L+LS+N L              
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 881 NLKQIESLDLSYNLLHGKIPPQL 903
               +E L L       ++  +L
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (132), Expect = 2e-08
 Identities = 47/444 (10%), Positives = 107/444 (24%), Gaps = 11/444 (2%)

Query: 341 SLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISL--EPLFNLSKLQTFNG 398
            ++ LD+   +L++   +  L  L   + + L +    +         L     L   N 
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 399 EINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNW 458
             N   +     +    Q  S  +                   +++            + 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 459 LLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMEL 518
           LL +           +      ++ +      A             P      +      
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 519 NLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHI 578
                     +  S   ++ L+                +     SL  LAL +N+L    
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 579 FSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQY 638
            +E        + +L           +     + R L   ++     +          + 
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 639 IIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLE 698
           +          +   + +  S      S+ S             I    L    +    +
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 699 SIIHDNPHLVTLDLSYNSLHG----SIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQ--- 751
            +      L  L L+   +      S+   +     L  L L++N +     +QL +   
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 752 --LKEVRLIDLSHNNLSGRIPPCL 773
                +  + L     S  +   L
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 1e-05
 Identities = 13/89 (14%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 88  NLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYL 147
           +++ LD+    + +    +    L++   + L   G+       +  ++   P+L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 148 SHTKFKGTVVNQKL----HNFTNLEELIL 172
              +     V+  L         +++L L
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 2e-05
 Identities = 56/485 (11%), Positives = 126/485 (25%), Gaps = 43/485 (8%)

Query: 243 SLNFLSLTNSSLNKHTILDQGLCQLV----HLQGLYIRDNDLRD----GLPWCLANMTSL 294
           SL+  SL    +    + D    +L+      Q + + D  L +     +   L    +L
Sbjct: 1   SLDIQSL---DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPAL 57

Query: 295 QVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTE 354
             L   SN+L       + + +      I    L+               L         
Sbjct: 58  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 117

Query: 355 NISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPK 414
           ++S + L             +   ++        +LS           + +  +  LT  
Sbjct: 118 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 177

Query: 415 FQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANN 474
               + +    +  G        +           +   +    +    +  E  L +N 
Sbjct: 178 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 237

Query: 475 SLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFA 534
                           ++       ++  I  +    L  ++    S    + +      
Sbjct: 238 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 297

Query: 535 DMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLD 594
           +   L    +       E     +    +      S+   Q     E          +L+
Sbjct: 298 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI----SNNRLE 353

Query: 595 GNNFIGEIPESLSKCYMLRGLYLSDNHL----FGKIPRWLGNLPTLQYIIMPNNNLEGPI 650
                           +LR L+L+D  +       +   L    +L+ + + NN L    
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 651 PIEFCQ-----RDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNP 705
            ++  +        L+ L L +                        ++E RL+++  D P
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYW-------------------SEEMEDRLQALEKDKP 454

Query: 706 HLVTL 710
            L  +
Sbjct: 455 SLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 5e-05
 Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 5/87 (5%)

Query: 840 IDLSCNKLTGEIPTQI-GYLTRIHALNLSHNNLTG----TIPTTFSNLKQIESLDLSYNL 894
           +D+ C +L+     ++   L +   + L    LT      I +       +  L+L  N 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 895 LHGKIPPQLIVLNTLEVFKVAYNNLSG 921
           L       ++        K+   +L  
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 1e-04
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 7/70 (10%)

Query: 12 LESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNN----SIFSSLGGLSSLRHL 67
          ++SLD+    ++        E L  L   + + L+D          I S+L    +L  L
Sbjct: 4  IQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 68 SLADNRLNGS 77
          +L  N L   
Sbjct: 61 NLRSNELGDV 70

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 1e-04
 Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 39  NLKFLYLNDNHFNNSIFSSL-GGLSSLRHLSLADNRLN--GSIDI-KGLNSLSNLEELDM 94
           +++ L +     +++ ++ L   L   + + L D  L      DI   L     L EL++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 95  TGNAIENLVVPKDFRGLRKLNT 116
             N + ++ V    +GL+  + 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSC 84

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 3e-04
 Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 5/83 (6%)

Query: 1   MNASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGG 60
           +   L  P   L  L L+  +++    +     L    +L+ L L++N   ++    L  
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 61  -----LSSLRHLSLADNRLNGSI 78
                   L  L L D   +  +
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEM 442

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 0.001
 Identities = 11/74 (14%), Positives = 18/74 (24%)

Query: 3  ASLFTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLS 62
          A L    QQ + + L    +      +    L     L  L L  N   +     +    
Sbjct: 20 AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 79

Query: 63 SLRHLSLADNRLNG 76
                +    L  
Sbjct: 80 QTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 38  TNLKFLYLNDNHFNN----SIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSL----SNL 89
           + L+ L+L D   ++    S+ ++L    SLR L L++N L  +  ++ + S+      L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 90  EELDMTGNAIENLVVPKDFRGLRKLN 115
           E+L +      +  +    + L K  
Sbjct: 429 EQLVLYDIYW-SEEMEDRLQALEKDK 453

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.6 bits (123), Expect = 2e-08
 Identities = 27/131 (20%), Positives = 57/131 (43%), Gaps = 11/131 (8%)

Query: 15  LDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRL 74
           L L+  ++        L  L +L  +  L L+    +N + +    L++LR L +     
Sbjct: 3   LHLAHKDL------TVLCHLEQLLLVTHLDLS----HNRLRALPPALAALRCLEVLQASD 52

Query: 75  NGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQ 134
           N   ++ G+ +L  L+EL +  N ++     +      +L  L L G+ + + +G    +
Sbjct: 53  NALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI-QER 111

Query: 135 SIGSLPSLKTL 145
               LPS+ ++
Sbjct: 112 LAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.1 bits (106), Expect = 3e-06
 Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 8/127 (6%)

Query: 613 RGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFG 672
           R L+L+   L   +   L  L  + ++ + +N L    P        L++L  ++++   
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQ-ASDNALE 56

Query: 673 TLPSCFSPASIEQVHLSKNKIEG-RLESIIHDNPHLVTLDLSYNSLH---GSIPNRIDRL 728
            +    +   ++++ L  N+++       +   P LV L+L  NSL    G      + L
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 729 PQLNYLL 735
           P ++ +L
Sbjct: 117 PSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 12/133 (9%)

Query: 41  KFLYLNDNHFNNSIFSSLGGLSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIE 100
           + L+L       ++   L  L  + HL L+ NRL          +L+ L  L++   +  
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-----ALAALRCLEVLQASDN 53

Query: 101 NLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKG--TVVN 158
            L        L +L  L L  +   R+  S  +Q + S P L  L L          +  
Sbjct: 54  ALENVDGVANLPRLQELLLCNN---RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 110

Query: 159 QKLHNFTNLEELI 171
           +      ++  ++
Sbjct: 111 RLAEMLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 4e-05
 Identities = 28/130 (21%), Positives = 46/130 (35%), Gaps = 9/130 (6%)

Query: 343 RVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINA 402
           RVL +++  LT       L  L  +  L LS+N    +P +L  L  L  LQ  +  +  
Sbjct: 1   RVLHLAHKDLT---VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 57

Query: 403 QTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGE--FPNWLL 460
                      +  L +  L          + L     L  +NL   +L  E      L 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQ----QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 113

Query: 461 ENNTNLETLL 470
           E   ++ ++L
Sbjct: 114 EMLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 6e-05
 Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 8/113 (7%)

Query: 445 NLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHI 504
           +L+H +L+    +  LE    +  L L++N L    R    +   L  L+V         
Sbjct: 4   HLAHKDLT-VLCH--LEQLLLVTHLDLSHNRL----RALPPALAALRCLEVLQASDNALE 56

Query: 505 PVEIGTYLPGLMELNLSRNAFNG-SIPSSFADMKMLERLDISNNQLTGEIPER 556
            V+    LP L EL L  N     +          L  L++  N L  E   +
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 109

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 7e-05
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 7/108 (6%)

Query: 542 LDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGE 601
           L +++  LT  +          +  L LS+NRL+         L  L  L    ++   E
Sbjct: 3   LHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVL--QASDNALE 56

Query: 602 IPESLSKCYMLRGLYLSDNHLFG-KIPRWLGNLPTLQYIIMPNNNLEG 648
             + ++    L+ L L +N L      + L + P L  + +  N+L  
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 9e-05
 Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 5/118 (4%)

Query: 273 LYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSL 332
           L++   DL       L  +  +  L  S N+L     P L  L  L  L   +N L    
Sbjct: 3   LHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENVD 59

Query: 333 PLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNL 390
            +   NL  L+ L +  N+L ++ +   L+    +  L L  N   Q     E L  +
Sbjct: 60  GVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 9/114 (7%)

Query: 6   FTPFQQLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLR 65
                 +  LDLS N +           L+ L  L+ L  +DN   N     +  L  L+
Sbjct: 16  LEQLLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQASDNALEN--VDGVANLPRLQ 68

Query: 66  HLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENL--VVPKDFRGLRKLNTL 117
            L L +NRL  S  I+ L S   L  L++ GN++     +  +    L  ++++
Sbjct: 69  ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 23/105 (21%)

Query: 518 LNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPE--------------------RM 557
           L+L+      ++      + ++  LD+S+N+L    P                       
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 558 ATGCFSLEILALSNNRLQGHIFSEKF-NLTNLMTLQLDGNNFIGE 601
                 L+ L L NNRLQ     +   +   L+ L L GN+   E
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 5/108 (4%)

Query: 661 KILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGS 720
           ++L L++  +   L        +  + LS N++     ++      L  L  S N+L   
Sbjct: 1   RVLHLAHKDL-TVLCHLEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQASDNALENV 58

Query: 721 IPNRIDRLPQLNYLLLAHNYIKG-EIPVQLCQLKEVRLIDLSHNNLSG 767
                    Q   LLL +N ++       L     + L++L  N+L  
Sbjct: 59  DGVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 7/189 (3%)

Query: 503 HIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCF 562
            +P ++         L+LS N       ++      L +L++   +    + +    G  
Sbjct: 24  ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE----LTKLQVDGTL 76

Query: 563 SLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHL 622
            +      ++     +      L  L  L +  N        +L     L+ LYL  N L
Sbjct: 77  PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136

Query: 623 FGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPAS 682
               P  L   P L+ + + NNNL           ++L  L L  NS++      F    
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196

Query: 683 IEQVHLSKN 691
           +    L  N
Sbjct: 197 LPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 4e-08
 Identities = 40/222 (18%), Positives = 58/222 (26%), Gaps = 19/222 (8%)

Query: 676 SCFSPASIEQVHLSKNKIEGRLESIIHDNP-HLVTLDLSYNSLHGSIPNRIDRLPQLNYL 734
                AS  +V+  K      L ++  D P     L LS N L+      +    +L  L
Sbjct: 5   EVSKVASHLEVNCDKR----NLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 735 LLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCR 794
            L    +          L  +  +DLSHN L           +L          TS+   
Sbjct: 61  NLDRAELT--KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 795 RASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQ 854
                            +        T                     + N LT      
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL-----------ANNNLTELPAGL 167

Query: 855 IGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 896
           +  L  +  L L  N+L  TIP  F     +    L  N   
Sbjct: 168 LNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 3e-07
 Identities = 42/207 (20%), Positives = 63/207 (30%), Gaps = 10/207 (4%)

Query: 440 DLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNF 499
               VN    NL+   P  L     +   L L+ N L+      +  + +L  L++    
Sbjct: 11  SHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 500 FQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMAT 559
                       LP L  L+LS N              +       N   +  +P     
Sbjct: 67  LTKLQVD---GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS--LPLGALR 121

Query: 560 GCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSD 619
           G   L+ L L  N L+            L  L L  NN        L+    L  L L +
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 620 NHLFGKIPRWLGNLPTLQYIIMPNNNL 646
           N L+  IP+       L +  +  N  
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 6e-06
 Identities = 40/194 (20%), Positives = 70/194 (36%), Gaps = 6/194 (3%)

Query: 584 NLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPN 643
            + + + +  D  N    +P  L K      L+LS+N L+      L     L  + +  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL-- 62

Query: 644 NNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHD 703
           +  E            L  LDLS+N +        +  ++  + +S N++       +  
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 704 NPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHN 763
              L  L L  N L    P  +   P+L  L LA+N +       L  L+ +  + L  N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 764 NLSGRIPPCLVNTS 777
           +L   IP     + 
Sbjct: 183 SLY-TIPKGFFGSH 195

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 1e-05
 Identities = 38/244 (15%), Positives = 72/244 (29%), Gaps = 40/244 (16%)

Query: 701 IHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDL 760
           +      + ++    +L  ++P  +        L L+ N +       L     +  ++L
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 761 SHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQF 820
               L              +       P       +     +      + P      V F
Sbjct: 63  DRAEL-------------TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF 109

Query: 821 TTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFS 880
                      R L  +  + L  N+L    P  +    ++  L+L++NNLT       +
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169

Query: 881 NLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGN 940
            L+ +++L L  N L+  IP      + L         L G                  N
Sbjct: 170 GLENLDTLLLQENSLY-TIPKGFFGSHLLPFA-----FLHG------------------N 205

Query: 941 PFLC 944
           P+LC
Sbjct: 206 PWLC 209

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 39/212 (18%), Positives = 63/212 (29%), Gaps = 11/212 (5%)

Query: 290 NMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSY 349
            + S   +      LT  + P L +      L++  N L       L   T L  L++  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 350 NQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYD 409
            +LT+     +L  L +++           +  +L  L  L         +         
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 410 SLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETL 469
            L   +           +  T P  L              N   E P  LL    NL+TL
Sbjct: 125 ELQELYL-------KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 470 LLANNSLFGSFRMPIHSHQKLATLDVFNNFFQ 501
           LL  NSL+ +          L    +  N + 
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 7e-04
 Identities = 34/244 (13%), Positives = 74/244 (30%), Gaps = 25/244 (10%)

Query: 84  NSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLK 143
           + +++  E++     +    +P D    +    L+L  + +     +    ++     L 
Sbjct: 7   SKVASHLEVNCDKRNLTA--LPPDL--PKDTTILHLSENLLYTFSLA----TLMPYTRLT 58

Query: 144 TLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQDCVLK 203
            L L   +     V+  L        L   +   +  Q L  +        +        
Sbjct: 59  QLNLDRAELTKLQVDGTLPV------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112

Query: 204 GALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHTILDQG 263
            +L               +  + +  N       G   P+     L+ ++ N   +    
Sbjct: 113 TSLPLGALRGLGE-----LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167

Query: 264 LCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYI 323
           L  L +L  L +++N L   +P        L   +   N    N     CE++  R+   
Sbjct: 168 LNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLCN-----CEILYFRRWLQ 221

Query: 324 DNND 327
           DN +
Sbjct: 222 DNAE 225

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (118), Expect = 3e-07
 Identities = 26/230 (11%), Positives = 67/230 (29%), Gaps = 4/230 (1%)

Query: 319 RKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFF 378
           R      + +   +P  L    +   L     +L   I   +      +E++ +S N   
Sbjct: 11  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVL 66

Query: 379 QIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQ 438
           ++  +          +    + N     + ++      L  + +S             H 
Sbjct: 67  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 126

Query: 439 HDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNN 498
                +++                 +    +L  N +          +  +L  L++ +N
Sbjct: 127 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDN 186

Query: 499 FFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQ 548
                +P ++     G + L++SR   +        ++K L      N +
Sbjct: 187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 2e-05
 Identities = 25/243 (10%), Positives = 58/243 (23%), Gaps = 11/243 (4%)

Query: 659 SLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLH 718
           S ++     + +   +PS   P +  ++     K+    +        L  +++S N + 
Sbjct: 9   SNRVFLCQESKV-TEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 66

Query: 719 GSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSL 778
             I   +       + +                     L  L  +N        + +   
Sbjct: 67  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN------TGIKHLPD 120

Query: 779 NEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMS 838
               H             +++                  +        +           
Sbjct: 121 VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDE 180

Query: 839 GIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK 898
                 N L           +    L++S   +         NLK++ +    YNL   K
Sbjct: 181 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST-YNL--KK 237

Query: 899 IPP 901
           +P 
Sbjct: 238 LPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 3e-04
 Identities = 27/220 (12%), Positives = 49/220 (22%), Gaps = 9/220 (4%)

Query: 705 PHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNN 764
            + + L      L             L  + ++ N +   I   +               
Sbjct: 29  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 765 LSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKN 824
            +          +L    +  ++ T I          +                      
Sbjct: 89  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148

Query: 825 MSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQ 884
           +   ++  IL       L+ N +                    +NNL       F     
Sbjct: 149 VGLSFESVIL------WLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASG 202

Query: 885 IESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIP 924
              LD+S   +H      L  L  L        NL  K+P
Sbjct: 203 PVILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 21/239 (8%), Positives = 52/239 (21%), Gaps = 9/239 (3%)

Query: 440 DLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIH--SHQKLATLDVFN 497
                      ++ E P+ L     N   L      L    +         +   +   +
Sbjct: 9   SNRVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 64

Query: 498 NFFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERM 557
                   V         + +  + N    +  +      +   L  +          ++
Sbjct: 65  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 124

Query: 558 ATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYL 617
            +    L  +  + N       S        + L L+ N        + +   +      
Sbjct: 125 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLS 184

Query: 618 SDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPS 676
            +N+L                + +    +             L+     N      LP+
Sbjct: 185 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 4e-07
 Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 2/116 (1%)

Query: 835 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPT-TFSNLKQIESLDLSYN 893
              SG+  + +    +    +     +  L + +      +       L ++ +L +  +
Sbjct: 8   HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 894 LLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGQPLS 949
            L    P        L    +++N L        Q  + +E    GNP  C   L 
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALR 122

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 4e-05
 Identities = 31/150 (20%), Positives = 43/150 (28%), Gaps = 10/150 (6%)

Query: 514 GLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNR 573
           G   L  +R+             + L  L I N Q    +  R   G   L  L +  + 
Sbjct: 9   GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67

Query: 574 LQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLF-GKIPRWLGN 632
           L+            L  L L  N     +     +   L+ L LS N L      RWL  
Sbjct: 68  LRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQR 126

Query: 633 LPTLQYIIMPNNNL--EGP-----IPIEFC 655
                   +P   L   G      +P   C
Sbjct: 127 WEEEGLGGVPEQKLQCHGQGPLAHMPNASC 156

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 20/144 (13%), Positives = 40/144 (27%), Gaps = 6/144 (4%)

Query: 539 LERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNF 598
              L  + +    +    +       E+   +   LQ     +   L  L  L +  +  
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 599 IGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRD 658
               P++      L  L LS N     +        +LQ +++  N L     + + QR 
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQR- 126

Query: 659 SLKILDLSNNSIFGTLPSCFSPAS 682
                +     +      C     
Sbjct: 127 ---WEEEGLGGVPEQKLQCHGQGP 147

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 22/149 (14%), Positives = 46/149 (30%), Gaps = 3/149 (2%)

Query: 586 TNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPR-WLGNLPTLQYIIMPNN 644
                L+   +  + +    L     L  LY+ +      +    L  L  L+ + +  +
Sbjct: 8   HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 645 NLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESI-IHD 703
            L    P  F     L  L+LS N++           S++++ LS N +        +  
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQR 126

Query: 704 NPHLVTLDLSYNSLHGSIPNRIDRLPQLN 732
                   +    L       +  +P  +
Sbjct: 127 WEEEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.2 bits (118), Expect = 8e-07
 Identities = 54/315 (17%), Positives = 94/315 (29%), Gaps = 14/315 (4%)

Query: 612 LRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEG-PIPIEFCQRDSLKILDLSNNSI 670
              L L++  L   +P    +L   + ++   N+L   P   +  +   +   +L   S 
Sbjct: 40  AHELELNNLGL-SSLPELPPHL---ESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD 95

Query: 671 FGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQ 730
              L      ++ +   L + +    L+ I  DN  L  L     SL             
Sbjct: 96  LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEEL 155

Query: 731 LNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTS 790
                L            L +L ++ L   S    +  +       +L            
Sbjct: 156 PELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL 215

Query: 791 IWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGE 850
           +            L  + +      E  Q  T           L+ +       N  + E
Sbjct: 216 LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE 275

Query: 851 IPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLE 910
           I +       +  LN+S+N L   +P     L   E L  S+N L  ++P        L+
Sbjct: 276 IRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHL-AEVPEL---PQNLK 327

Query: 911 VFKVAYNNLSGKIPD 925
              V YN L  + PD
Sbjct: 328 QLHVEYNPLR-EFPD 341

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.2 bits (118), Expect = 8e-07
 Identities = 51/341 (14%), Positives = 102/341 (29%), Gaps = 24/341 (7%)

Query: 332 LPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPL--FN 389
           L  CL        L+++   L+             +E L+ S N   ++P   + L    
Sbjct: 32  LRDCLDR--QAHELELNNLGLSSLPEL-----PPHLESLVASCNSLTELPELPQSLKSLL 84

Query: 390 LSKLQTFNGEINAQ---TESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNL 446
           +                     ++   K      S    +                S+  
Sbjct: 85  VDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144

Query: 447 SHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPV 506
                +       L+N   L  +   NNSL     +P+     +A  ++     +     
Sbjct: 145 IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP 204

Query: 507 EIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEI 566
            + T       L    +        +  D  + +  ++  +    ++ E + +G   L  
Sbjct: 205 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 264

Query: 567 LALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKI 626
                N     I S      +L  L +  N  + E+P    +   L  L  S NHL  ++
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELPALPPR---LERLIASFNHL-AEV 319

Query: 627 PRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSN 667
           P    N   L+ + +  N L    P      +S++ L +++
Sbjct: 320 PELPQN---LKQLHVEYNPLRE-FPDIP---ESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 2e-06
 Identities = 62/330 (18%), Positives = 109/330 (33%), Gaps = 21/330 (6%)

Query: 265 CQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYID 324
           C       L + +  L   LP    +   L+ L AS N LT  +      L  L     +
Sbjct: 35  CLDRQAHELELNNLGLSS-LPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNN 89

Query: 325 NNDLRGSLPLCLANLTSLRVLD------VSYNQLTENISSSSLMHLTSIEELILSNNHFF 378
              L    PL      S   L+       S      ++ ++SL  L  +   +       
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 379 QIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQ 438
                L  L NL  L     + N+  +     L+ +  +   ++   +       FL   
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 439 HDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNN 498
           +  N++  +  +L        + +N   +   L  +  F      I S       +++  
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 499 FFQGHIPVEIGTYLPGLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMA 558
               +    +    P L ELN+S N     +P+       LERL  S N L  E+PE   
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLA-EVPELPQ 324

Query: 559 TGCFSLEILALSNNRLQGHIFSEKFNLTNL 588
               +L+ L +  N L+        ++ +L
Sbjct: 325 ----NLKQLHVEYNPLRE-FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 52/351 (14%), Positives = 93/351 (26%), Gaps = 36/351 (10%)

Query: 561 CFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDN 620
                 L L+N  L     S      +L +L    N+ + E+PE       L+ L + +N
Sbjct: 37  DRQAHELELNNLGLS----SLPELPPHLESLVASCNS-LTELPELPQS---LKSLLVDNN 88

Query: 621 HLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSP 680
           +L                +      LE             ++ + S   I     +    
Sbjct: 89  NLKA--------------LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK 134

Query: 681 ASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNY 740
                  L            + +  +L  L   Y   +         L   + +   +  
Sbjct: 135 LPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL 194

Query: 741 IKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYR 800
            +      L  L  +   +     L    P        +                     
Sbjct: 195 EELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 254

Query: 801 SACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTR 860
                 +  P +           +        +  S+  +++S NKL  E+P     L R
Sbjct: 255 IFSGLSELPPNLY-----YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER 308

Query: 861 IHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEV 911
              L  S N+L   +P    NLK    L + YN L  + P     +  L +
Sbjct: 309 ---LIASFNHLA-EVPELPQNLK---QLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.3 bits (113), Expect = 3e-06
 Identities = 60/325 (18%), Positives = 100/325 (30%), Gaps = 44/325 (13%)

Query: 318 LRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTE--------------NISSSSLMH 363
             +L ++N  L  SLP        L  L  S N LTE              N +  +L  
Sbjct: 40  AHELELNNLGLS-SLP---ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD 95

Query: 364 LTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESH---------------Y 408
           L  + E +  +N+  +    L+    L  +   N  +    +                  
Sbjct: 96  LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEEL 155

Query: 409 DSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLET 468
             L     LT+I              L  +  +   N+       +   +L     +   
Sbjct: 156 PELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL 215

Query: 469 LLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLMELNLSRNAFNGS 528
           L    +       + +  +      ++  +     +   I + L  L       NA +  
Sbjct: 216 LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE 275

Query: 529 IPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNL 588
           I S       LE L++SNN+L  E+P         LE L  S N L   +        NL
Sbjct: 276 IRSLCDLPPSLEELNVSNNKLI-ELPA----LPPRLERLIASFNHLA-EVPEL---PQNL 326

Query: 589 MTLQLDGNNF--IGEIPESLSKCYM 611
             L ++ N      +IPES+    M
Sbjct: 327 KQLHVEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 2e-05
 Identities = 50/329 (15%), Positives = 90/329 (27%), Gaps = 17/329 (5%)

Query: 62  SSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGG 121
                L L +  L+   ++       +LE L  + N++  L  P+  + L+ L       
Sbjct: 38  RQAHELELNNLGLSSLPEL-----PPHLESLVASCNSLTEL--PELPQSLKSLLVDNNNL 90

Query: 122 SGIPRIDGSKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQ 181
             +  +        + +    K   L ++ F   +           +     E     + 
Sbjct: 91  KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 150

Query: 182 LLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESM 241
            L+ +    +L  L+             D              ++       L  +    
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 210

Query: 242 PSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASS 301
              N L            L+     L  L  L      L                LY   
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLY-YL 269

Query: 302 NQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSL 361
           N  +  I         L +L + NN L   LP   A    L  L  S+N L E       
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELP---ALPPRLERLIASFNHLAEVPEL--- 322

Query: 362 MHLTSIEELILSNNHFFQIPISLEPLFNL 390
               ++++L +  N   + P   E + +L
Sbjct: 323 --PQNLKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 4e-04
 Identities = 51/336 (15%), Positives = 96/336 (28%), Gaps = 25/336 (7%)

Query: 11  QLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLA 70
           Q   L+L+   +       SL  L    +L+ L  + N     +        SL+ L + 
Sbjct: 39  QAHELELNNLGL------SSLPEL--PPHLESLVASCNSL-TELPELPQ---SLKSLLVD 86

Query: 71  DNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGS 130
           +N L    D+     L  L   +     +  L      + +   N        +P     
Sbjct: 87  NNNLKALSDLP--PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144

Query: 131 KVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFT 190
               +       +   L          N           L    +  ++ + L  + +  
Sbjct: 145 IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP 204

Query: 191 SLKHLSMQDCVLKGALHGQDFLKFKNLEYLDM--GWVQVDVNTNFLQIVGESMPSLNFLS 248
            L  +   + +LK        L+  N+    +          T                 
Sbjct: 205 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 264

Query: 249 LTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNI 308
                      +         L+ L + +N L + LP   A    L+ L AS N L   +
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LP---ALPPRLERLIASFNHLA-EV 319

Query: 309 SPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRV 344
                    L++L+++ N LR   P    ++  LR+
Sbjct: 320 PELPQN---LKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.5 bits (109), Expect = 4e-06
 Identities = 29/191 (15%), Positives = 72/191 (37%), Gaps = 14/191 (7%)

Query: 707 LVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 766
            +  +L   S+  ++    + L  ++ ++  ++ IK    +Q   L  V  + L+ N L+
Sbjct: 26  TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGNKLT 81

Query: 767 GRI------PPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQF 820
                        +    N+             +  S+  +          + + E++  
Sbjct: 82  DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYL 141

Query: 821 TTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFS 880
               ++       LT +  + L  N+++  +P  +  LT++  L LS N+++       +
Sbjct: 142 GNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LRALA 197

Query: 881 NLKQIESLDLS 891
            LK ++ L+L 
Sbjct: 198 GLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 29/209 (13%), Positives = 67/209 (32%), Gaps = 33/209 (15%)

Query: 504 IPVEIGTYLP-----GLMELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMA 558
           +P  I            ++ NL + +   ++  +  ++  ++++  +N+ +      +  
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQYL 67

Query: 559 TGCFSLEILALSNNRLQGHIFSEKFNLTNLMTL------------------QLDGNNFIG 600
               ++  L L+ N+L              + L                   L   +   
Sbjct: 68  P---NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 601 EIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSL 660
                L     L  LYL +N +          L  L  + + +N +   +P+       L
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVPLAGLT--KL 180

Query: 661 KILDLSNNSIFGTLPSCFSPASIEQVHLS 689
           + L LS N I   L +     +++ + L 
Sbjct: 181 QNLYLSKNHI-SDLRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 31/209 (14%), Positives = 69/209 (33%), Gaps = 21/209 (10%)

Query: 338 NLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFN 397
                   ++    +T+ ++ +    L SI+++I +N+       S++ +  L  +    
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDI----KSVQGIQYLPNVTKLF 74

Query: 398 GEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPN 457
              N  T+    +         +  +   D  +  +    +        S  +      N
Sbjct: 75  LNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL------SLEHNGISDIN 128

Query: 458 WLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLME 517
            L+         L  N     +    +       TL + +N     +P+     L  L  
Sbjct: 129 GLVHLPQLESLYLGNNKITDITVLSRLTKLD---TLSLEDNQISDIVPLA---GLTKLQN 182

Query: 518 LNLSRNAFNGSIPSSFADMKMLERLDISN 546
           L LS+N    S   + A +K L+ L++ +
Sbjct: 183 LYLSKNHI--SDLRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 29/211 (13%), Positives = 65/211 (30%), Gaps = 18/211 (8%)

Query: 528 SIPSSFAD--MKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNL 585
            I   F+D       + ++    +T  + +       S++ +  +N+ ++         L
Sbjct: 13  PIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELN---SIDQIIANNSDIKS--VQGIQYL 67

Query: 586 TNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNN 645
            N+  L L+GN      P +  K      L  +       +         L+ + + +N 
Sbjct: 68  PNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDL----KKLKSLSLEHNG 123

Query: 646 LEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNP 705
           +     +    +     L  +  +    L       ++       + I       +    
Sbjct: 124 ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-----LAGLT 178

Query: 706 HLVTLDLSYNSLHGSIPNRIDRLPQLNYLLL 736
            L  L LS N +   +   +  L  L+ L L
Sbjct: 179 KLQNLYLSKNHIS-DLRA-LAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 37/223 (16%), Positives = 69/223 (30%), Gaps = 29/223 (13%)

Query: 79  DIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGS 138
            I   ++ +   + ++   ++ + V   +   L  ++ +    S I  + G      I  
Sbjct: 16  QIFSDDAFAETIKDNLKKKSVTDAVTQNE---LNSIDQIIANNSDIKSVQG------IQY 66

Query: 139 LPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSMQ 198
           LP++  L+L+  K         L N                            +K LS  
Sbjct: 67  LPNVTKLFLNGNKLTDIKPLANLKNLG------------------WLFLDENKVKDLSSL 108

Query: 199 DCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKHT 258
             + K      +     ++  L        +     +I   ++ S      T S  +   
Sbjct: 109 KDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQI 168

Query: 259 ILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASS 301
                L  L  LQ LY+  N + D     LA + +L VL   S
Sbjct: 169 SDIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 4e-06
 Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 337 ANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTF 396
             L +   +    + +T+ ++ +    L  I  L            ++E +  L+ L   
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGV----TTIEGVQYLNNLIGL 68

Query: 397 NGEINAQTESHYDSLTPKFQLTSISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFP 456
             + N  T+        K     +S +   +          +    +             
Sbjct: 69  ELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT-------D 121

Query: 457 NWLLENNTNLETLLLANNSLFGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGLM 516
              L   +NL+ L L  N +     +   ++ +  ++          +       L  L 
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPL-----ANLSKLT 176

Query: 517 ELNLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSN 571
            L    N  +   P   A +  L  + + NNQ++   P        +L I+ L+N
Sbjct: 177 TLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 25/209 (11%), Positives = 61/209 (29%), Gaps = 12/209 (5%)

Query: 687 HLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIP 746
              K+ +         D   + TL      +  +I   +  L  L  L L  N I    P
Sbjct: 25  AAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQITDLAP 80

Query: 747 VQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSL----NEGYHGEVAPTSIWCRRASVYRSA 802
           ++         +  +       I       +L     +             +   +  + 
Sbjct: 81  LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQ 140

Query: 803 CLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIH 862
                    +   + +      +S       L+ ++ +    NK++   P  +  L  + 
Sbjct: 141 ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLI 198

Query: 863 ALNLSHNNLTGTIPTTFSNLKQIESLDLS 891
            ++L +N ++   P   +N   +  + L+
Sbjct: 199 EVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 9e-04
 Identities = 39/237 (16%), Positives = 76/237 (32%), Gaps = 27/237 (11%)

Query: 138 SLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTSLKHLSM 197
           +L +   +    +    TV    L     +  L    + +     ++ +    +L  L +
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQADL---DGITTLSAFGTGVTT---IEGVQYLNNLIGLEL 70

Query: 198 QDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTNSSLNKH 257
           +D  +       D    KNL  +    +  +   N   I G        L+ T  +    
Sbjct: 71  KDNQI------TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP 124

Query: 258 TILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVL 317
                 L  L          + L         ++ + QV               L  L  
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD----------LTPLANLSK 174

Query: 318 LRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEELILSN 374
           L  L  D+N +    PL  A+L +L  + +  NQ++     S L + +++  + L+N
Sbjct: 175 LTTLKADDNKISDISPL--ASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 606 LSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDL 665
           L+    L  L   DN +    P  L +LP L  + + NN +    P+      +L I+ L
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLANTS--NLFIVTL 224

Query: 666 SN 667
           +N
Sbjct: 225 TN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 24/209 (11%), Positives = 62/209 (29%), Gaps = 14/209 (6%)

Query: 707 LVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLS 766
            + +    +++  ++      L  +  L      +     VQ   L  +  ++L  N ++
Sbjct: 21  AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKDNQIT 76

Query: 767 GRIPP----CLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTT 822
              P      +    L+      V+  +      ++  ++      +P  G         
Sbjct: 77  DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136

Query: 823 KNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNL 882
                     +    +   LS         T +  L+++  L    N ++   P   ++L
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASL 194

Query: 883 KQIESLDLSYNLLHGKIP----PQLIVLN 907
             +  + L  N +    P      L ++ 
Sbjct: 195 PNLIEVHLKNNQISDVSPLANTSNLFIVT 223

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 46.0 bits (107), Expect = 5e-06
 Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 3/163 (1%)

Query: 528 SIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTN 587
            IP           L +++N+L     + +      L  L L  N+L G   +     ++
Sbjct: 22  EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 588 LMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLE 647
           +  LQL  N       +     + L+ L L DN +   +P    +L +L  + + +N   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 648 GPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSK 690
               + +   + L+   L+  +     PS      I+ +  S+
Sbjct: 140 CNCHLAWF-AEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSE 181

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 26/165 (15%), Positives = 53/165 (32%), Gaps = 9/165 (5%)

Query: 189 FTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLS 248
                 L + D  L        F +  +L  L++   Q+             +  L    
Sbjct: 28  PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87

Query: 249 LTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNI 308
                ++           L  L+ L + DN +   +P    ++ SL  L  +SN    N 
Sbjct: 88  NKIKEISNKM-----FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142

Query: 309 SPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLT 353
                    LRK  ++    R   P   + +  +++ D+ +++  
Sbjct: 143 HLA-WFAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSEFK 183

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 8/140 (5%)

Query: 531 SSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMT 590
           + + +      LD+   ++   I   +       + +  S+N +          L  L T
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 591 LQLDGNNFIGEIPESLSKCYMLRGLYLSDNHL----FGKIPRWLGNLPTLQYIIMPNNNL 646
           L ++ N               L  L L++N L           L +L  L  +  P  N 
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 647 EGPIPIEFCQRDSLKILDLS 666
           +        +   +++LD  
Sbjct: 128 KHYRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.003
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 846 KLTGEIPTQIGY---LTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH 896
           KLT E+  Q        R   L+L    +   I    + L Q +++D S N + 
Sbjct: 2   KLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR 54

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.004
 Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 11/145 (7%)

Query: 2   NASLFTPFQQLESLDLSWNNIAGCVQNESLERL-SRLTNLKFLYLNDNHFNNSIFSSLGG 60
            A+ +T   +   LDL    I        +E L + L     +  +DN            
Sbjct: 10  QAAQYTNAVRDRELDLRGYKI------PVIENLGATLDQFDAIDFSDNEIRK--LDGFPL 61

Query: 61  LSSLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLG 120
           L  L+ L + +NR+    +     +L +L EL +T N++  L        L+ L  L + 
Sbjct: 62  LRRLKTLLVNNNRICRIGEGLD-QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 120

Query: 121 GSGIPRIDGSKVLQSIGSLPSLKTL 145
            + +      + L  I  +P ++ L
Sbjct: 121 RNPVTNKKHYR-LYVIYKVPQVRVL 144

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.9 bits (104), Expect = 4e-05
 Identities = 39/340 (11%), Positives = 94/340 (27%), Gaps = 34/340 (10%)

Query: 65  RHLSLADNRLNGSIDI-KGLNSLSNLEELDMTGNAIENL---VVPKDFRGLRKLNTLYLG 120
           + L L          +   L    +++E+ ++GN I       + ++    + L      
Sbjct: 8   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 121 GSGIPRIDG------SKVLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDE 174
                R+          +LQ++   P L T+ LS   F  T   Q+       +   L+ 
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT--AQEPLIDFLSKHTPLEH 125

Query: 175 SDLHVSQLLQSIASFTSLKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFL 234
             LH + L     +  +     +              +        +    +        
Sbjct: 126 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 185

Query: 235 QIVGESMPSLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSL 294
           +++       N +            L       V         +     L   L +  +L
Sbjct: 186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 245

Query: 295 QVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTE 354
           + L  +   L+   +  + +                           L+ L + YN++  
Sbjct: 246 RELGLNDCLLSARGAAAVVD------------------AFSKLENIGLQTLRLQYNEIEL 287

Query: 355 N----ISSSSLMHLTSIEELILSNNHFFQIPISLEPLFNL 390
           +    + +     +  +  L L+ N F +    ++ +  +
Sbjct: 288 DAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.6 bits (98), Expect = 2e-04
 Identities = 41/316 (12%), Positives = 96/316 (30%), Gaps = 30/316 (9%)

Query: 460 LENNTNLETLLLANNSL----FGSFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYLPGL 515
           L  + +++ ++L+ N++           I S + L   +  + F    +  EI   L  L
Sbjct: 27  LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG-RVKDEIPEALRLL 85

Query: 516 MEL--NLSRNAFNGSIPSSFADMKMLERLDISNNQLTGEIPERMATGCFSLEILALSNNR 573
           ++      +        ++F        +D  +     E       G        ++   
Sbjct: 86  LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARAL 145

Query: 574 LQGHIFSEKFNLTNLMTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNL 633
            +  +  +  N   L ++ + G N +                 L    +     R  G  
Sbjct: 146 QELAVNKKAKNAPPLRSI-ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE 204

Query: 634 PTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKI 693
             L   +     L+     +             +        +  S  ++ ++ L+   +
Sbjct: 205 HLLLEGLAYCQELKVLDLQDNTFT---------HLGSSALAIALKSWPNLRELGLNDCLL 255

Query: 694 EGRLESIIHD------NPHLVTLDLSYNSLHGSIPNRI-----DRLPQLNYLLLAHNYIK 742
             R  + + D      N  L TL L YN +       +     +++P L +L L  N   
Sbjct: 256 SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315

Query: 743 --GEIPVQLCQLKEVR 756
              ++  ++ ++   R
Sbjct: 316 EEDDVVDEIREVFSTR 331

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 4e-04
 Identities = 36/330 (10%), Positives = 81/330 (24%), Gaps = 33/330 (10%)

Query: 582 KFNLTNL-MTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHL----FGKIPRWLGNLPTL 636
           +F++    + L          +   L +   ++ + LS N +       +   + +   L
Sbjct: 2   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 61

Query: 637 QYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGR 696
           +     +                L    L    +     S  +     Q  L        
Sbjct: 62  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID------ 115

Query: 697 LESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVR 756
               +  +  L  L L  N L      +I R  Q   +   +   K   P++       R
Sbjct: 116 ---FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV---NKKAKNAPPLRSIICGRNR 169

Query: 757 LIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEE 816
           L + S    +       +  ++    +G             +     L            
Sbjct: 170 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH 229

Query: 817 TVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIG------YLTRIHALNLSHNN 870
                       +      ++  + L+   L+      +           +  L L +N 
Sbjct: 230 LGSSALAIALKSWP-----NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 284

Query: 871 LTGTIPTT-----FSNLKQIESLDLSYNLL 895
           +      T        +  +  L+L+ N  
Sbjct: 285 IELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 6e-04
 Identities = 37/324 (11%), Positives = 77/324 (23%), Gaps = 29/324 (8%)

Query: 243 SLNFLSLTNSSLNKHTILDQGLCQLVHLQGLYIRDNDLRD----GLPWCLANMTSLQVLY 298
           SL   ++T         +   L +   ++ + +  N +       L   +A+   L++  
Sbjct: 9   SLKLDAITTEDEKS---VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65

Query: 299 ASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISS 358
            S              L LL +  +    L        A   + +   + +      +  
Sbjct: 66  FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 125

Query: 359 SSLMHLTSIEELILSNNHFFQIPISLEPLFNLSKLQTFNGEINAQTESHYDSLTPKFQLT 418
             L +     +         Q     +   N   L++     N            K   +
Sbjct: 126 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM-KEWAKTFQS 184

Query: 419 SISLSGYVDGGTFPEFLYHQHDLNSVNLSHLNLSGEFPNWLLENNTNLETLLLANNSLFG 478
              L               +H L         L           +               
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-----------SS 233

Query: 479 SFRMPIHSHQKLATLDVFNNFFQGHIPVEIGTYL-----PGLMELNLSRNAFNGSIPSSF 533
           +  + + S   L  L + +          +          GL  L L  N        + 
Sbjct: 234 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 293

Query: 534 AD-----MKMLERLDISNNQLTGE 552
                  M  L  L+++ N+ + E
Sbjct: 294 KTVIDEKMPDLLFLELNGNRFSEE 317

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 7e-04
 Identities = 44/376 (11%), Positives = 97/376 (25%), Gaps = 58/376 (15%)

Query: 12  LESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNSIFSSLGGLSSLRHLSLAD 71
           +E   L  + I    +      L    ++K + L+ N         L             
Sbjct: 5   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLS------------ 52

Query: 72  NRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSK 131
                    + + S  +LE  + +      +                             
Sbjct: 53  ---------ENIASKKDLEIAEFSDIFTGRV-------------------KDEIPEALRL 84

Query: 132 VLQSIGSLPSLKTLYLSHTKFKGTVVNQKLHNFTNLEELILDESDLHVSQLLQSIASFTS 191
           +LQ++   P L T+ LS   F  T   Q+       +   L+   LH + L     +  +
Sbjct: 85  LLQALLKCPKLHTVRLSDNAFGPT--AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 142

Query: 192 LKHLSMQDCVLKGALHGQDFLKFKNLEYLDMGWVQVDVNTNFLQIVGESMPSLNFLSLTN 251
                +              +        +    +        +++       N +    
Sbjct: 143 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 202

Query: 252 SSLNKHTILDQGLCQLVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPG 311
                   L       V         +     L   L +  +L+ L  +   L+   +  
Sbjct: 203 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 262

Query: 312 L------CELVLLRKLYIDNNDLRGSLPLCLA-----NLTSLRVLDVSYNQLTENISSSS 360
           +       E + L+ L +  N++       L       +  L  L+++ N+ +E      
Sbjct: 263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDV-- 320

Query: 361 LMHLTSIEELILSNNH 376
              +  I E+  +   
Sbjct: 321 ---VDEIREVFSTRGR 333

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 7/139 (5%)

Query: 543 DISNNQLTGEIPERMATGCFSLEILALSNNRLQGHIFSEKFNLTNLMTLQLDGNNFIGEI 602
           ++   Q+  ++   M+   +     AL    L      +       + L    ++    +
Sbjct: 3   ELKPEQVE-QLKLIMSK-RYDGSQQALDLKGL--RSDPDLVAQNIDVVLNR-RSSMAATL 57

Query: 603 PESLSKCYMLRGLYLSDNHLFGK--IPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSL 660
                    L  L LS+N L+    +   +   P L+ + +  N L+    ++  +   L
Sbjct: 58  RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKL 117

Query: 661 KILDLSNNSIFGTLPSCFS 679
           + L L  NS+  T     +
Sbjct: 118 EELWLDGNSLSDTFRDQST 136

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 6/114 (5%)

Query: 659 SLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSL- 717
           S + LDL        L +     +I+ V   ++ +   L  I  + P L++L+LS N L 
Sbjct: 23  SQQALDLKGLRSDPDLVAQ----NIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLY 78

Query: 718 -HGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIP 770
               + + + + P L  L L+ N +K E  +   +  ++  + L  N+LS    
Sbjct: 79  RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR 132

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1037
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	100.0
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	100.0
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.97
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.97
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.97
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.97
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.94
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.94
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.94
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.93
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.93
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.92
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.92
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.92
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.91
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.9
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.89
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.83
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.79
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.76
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.76
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.74
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	99.08
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.99
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.87
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.72

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=0  Score=241.24  Aligned_cols=259  Identities=33%  Similarity=0.574  Sum_probs=195.1

Q ss_pred             CCCEEECCCCCCCC--CCCCCCCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             89789624871688--7980048999997897779-95756775100289998999884885754699887857667587
Q 001653          611 MLRGLYLSDNHLFG--KIPRWLGNLPTLQYIIMPN-NNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVH  687 (1037)
Q Consensus       611 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~  687 (1037)
                      .++.|+++++.+.+  .+|..++.+++|++|++++ |.+.+.+|..+..+++|++|++++|+                  
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~------------------  112 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN------------------  112 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC------------------
T ss_pred             EEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC------------------
T ss_conf             98899898998888887984784675335202026543330024311454200110203564------------------


Q ss_pred             CCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHCCCCCC-CEEECCCCCCC
Q ss_conf             24750467321322199983499857972788885100499988688644522245674200179976-39985688286
Q 001653          688 LSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEV-RLIDLSHNNLS  766 (1037)
Q Consensus       688 L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~ls~N~l~  766 (1037)
                           +.+..+..+..+..|+.+++++|.+.+.+|..+..++.++.+++++|.+.+.+|..+..+..+ +.+++++|+++
T Consensus       113 -----l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~  187 (313)
T d1ogqa_         113 -----VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             -----CEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred             -----CCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             -----344332222201110011112245555685122067400000023553356203121443112323102246435


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf             76897653588676778887886200012410234578999999999651388862475222233212465589955884
Q 001653          767 GRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNK  846 (1037)
Q Consensus       767 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~Ls~N~  846 (1037)
                      +..|..+..+                                                           ....++++.+.
T Consensus       188 ~~~~~~~~~l-----------------------------------------------------------~~~~l~l~~~~  208 (313)
T d1ogqa_         188 GKIPPTFANL-----------------------------------------------------------NLAFVDLSRNM  208 (313)
T ss_dssp             EECCGGGGGC-----------------------------------------------------------CCSEEECCSSE
T ss_pred             CCCCCCCCCC-----------------------------------------------------------CCCCCCCCCCC
T ss_conf             3324332222-----------------------------------------------------------22233333343


Q ss_pred             CCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCEECCCCC
Q ss_conf             55657700127687879976787442102565505755896728888287769600007999994764788361109999
Q 001653          847 LTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDR  926 (1037)
Q Consensus       847 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~p~~  926 (1037)
                      +.+.+|..+..++.++.+++++|.+++.+| .+..+++|+.|||++|+++|.+|..+..+++|++|+|++|+++|.+|+.
T Consensus       209 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~  287 (313)
T d1ogqa_         209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCCC
T ss_conf             322222222222221112222222222222-2224554444447657066608768847999998979588351668986


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             878887864236888888999989999
Q 001653          927 AQFSTFEEDSYEGNPFLCGQPLSKSCN  953 (1037)
Q Consensus       927 ~~~~~~~~~~~~~Np~~c~~~~~~~c~  953 (1037)
                      ..+..+...++.||+.+||.|+. .|+
T Consensus       288 ~~L~~L~~l~l~~N~~l~g~plp-~c~  313 (313)
T d1ogqa_         288 GNLQRFDVSAYANNKCLCGSPLP-ACT  313 (313)
T ss_dssp             TTGGGSCGGGTCSSSEEESTTSS-CCC
T ss_pred             CCCCCCCHHHHCCCCCCCCCCCC-CCC
T ss_conf             66799897886889500198988-989

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=100.00  E-value=5.1e-42  Score=209.79  Aligned_cols=80  Identities=28%  Similarity=0.262  Sum_probs=28.3

Q ss_pred             CCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEE
Q ss_conf             56542798368877988342101899997998768856767870100799997997868999998201024999999997
Q 001653          267 LVHLQGLYIRDNDLRDGLPWCLANMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLD  346 (1037)
Q Consensus       267 l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  346 (1037)
                      +.+|++|+++++.|+..  ..+..+++|++|++++|++++. + .++++++|++|++++|.+.+..  .+..+++|+.++
T Consensus        43 l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~  116 (384)
T d2omza2          43 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLT  116 (384)
T ss_dssp             HTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEE
T ss_pred             HCCCCEEECCCCCCCCC--CCCCCCCCCCEEECCCCCCCCC-C-CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCC
T ss_conf             57878998999898776--2424589999896818817988-6-3347711010301343332222--111233433344


Q ss_pred             CCCCCC
Q ss_conf             658767
Q 001653          347 VSYNQL  352 (1037)
Q Consensus       347 Ls~n~~  352 (1037)
                      ++++.+
T Consensus       117 ~~~~~~  122 (384)
T d2omza2         117 LFNNQI  122 (384)
T ss_dssp             CCSSCC
T ss_pred             CCCCCC
T ss_conf             332222

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.4e-45  Score=227.38  Aligned_cols=251  Identities=32%  Similarity=0.518  Sum_probs=155.4

Q ss_pred             CCCEEECCCCCCCC--CCCCCCCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             97689776873799--8891110789897896248-71688798004899999789777995756775100289998999
Q 001653          587 NLMTLQLDGNNFIG--EIPESLSKCYMLRGLYLSD-NHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKIL  663 (1037)
Q Consensus       587 ~L~~L~L~~n~~~~--~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  663 (1037)
                      +++.|+++++.+.+  .+|..+..+++|+.|++++ |.+.+.+|..++++++|++|++++|++.+..+..+.....|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHCCC
T ss_conf             98899898998888887984784675335202026543330024311454200110203564344332222201110011


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHCCCCCC-CEEECCCCCCC
Q ss_conf             88488575469988785766758724750467321322199983499857972788885100499988-68864452224
Q 001653          664 DLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQL-NYLLLAHNYIK  742 (1037)
Q Consensus       664 ~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~L~~n~l~  742 (1037)
                      ++++|.+.+..|.                       .+..++.++.+++++|.+.+.+|..+..+..+ +.++++.|++.
T Consensus       131 ~l~~N~~~~~~p~-----------------------~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~  187 (313)
T d1ogqa_         131 DFSYNALSGTLPP-----------------------SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             ECCSSEEESCCCG-----------------------GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred             CCCCCCCCCCCCH-----------------------HHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             1122455556851-----------------------22067400000023553356203121443112323102246435


Q ss_pred             CCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             56742001799763998568828676897653588676778887886200012410234578999999999651388862
Q 001653          743 GEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTT  822 (1037)
Q Consensus       743 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  822 (1037)
                      +..+..+..+..+ .++++++...+.+|..+...                                              
T Consensus       188 ~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~----------------------------------------------  220 (313)
T d1ogqa_         188 GKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSD----------------------------------------------  220 (313)
T ss_dssp             EECCGGGGGCCCS-EEECCSSEEEECCGGGCCTT----------------------------------------------
T ss_pred             CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCC----------------------------------------------
T ss_conf             3324332222222-33333343322222222222----------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCC
Q ss_conf             47522223321246558995588455657700127687879976787442102565505755896728888287769600
Q 001653          823 KNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQ  902 (1037)
Q Consensus       823 ~~~~~~~~~~~l~~l~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~  902 (1037)
                                  +.++.+++++|.+++.+| .++.+++++.|+|++|++++.+|+.|+++++|+.|||++|+|+|.+|+ 
T Consensus       221 ------------~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-  286 (313)
T d1ogqa_         221 ------------KNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-  286 (313)
T ss_dssp             ------------SCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-
T ss_pred             ------------CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCC-
T ss_conf             ------------221112222222222222-222455444444765706660876884799999897958835166898-


Q ss_pred             CCCCCCCCEEECCCCC-CEE
Q ss_conf             0079999947647883-611
Q 001653          903 LIVLNTLEVFKVAYNN-LSG  921 (1037)
Q Consensus       903 ~~~l~~L~~l~ls~N~-l~~  921 (1037)
                      +..+++|+.+++++|+ +.|
T Consensus       287 ~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         287 GGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             STTGGGSCGGGTCSSSEEES
T ss_pred             CCCCCCCCHHHHCCCCCCCC
T ss_conf             66679989788688950019

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=100.00  E-value=2e-41  Score=206.99  Aligned_cols=81  Identities=28%  Similarity=0.345  Sum_probs=46.6

Q ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCE
Q ss_conf             89999799876885676787010079999799786899999820102499999999765876776459111159998989
Q 001653          290 NMTSLQVLYASSNQLTGNISPGLCELVLLRKLYIDNNDLRGSLPLCLANLTSLRVLDVSYNQLTENISSSSLMHLTSIEE  369 (1037)
Q Consensus       290 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~  369 (1037)
                      .+.+|++|+++++.+...  +++..+++|++|++++|.+++..  .+.++++|+.|++++|.+.+ ++  .+..+++|+.
T Consensus        42 ~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~-i~--~l~~l~~L~~  114 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIAD-IT--PLANLTNLTG  114 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG--GGTTCTTCCE
T ss_pred             HHCCCCEEECCCCCCCCC--CCCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCCCCCCCCCC-CC--CCCCCCCCCC
T ss_conf             957878998999898776--24245899998968188179886--33477110103013433322-22--1112334333


Q ss_pred             EECCCCCC
Q ss_conf             97547866
Q 001653          370 LILSNNHF  377 (1037)
Q Consensus       370 L~L~~n~l  377 (1037)
                      +++.++.+
T Consensus       115 L~~~~~~~  122 (384)
T d2omza2         115 LTLFNNQI  122 (384)
T ss_dssp             EECCSSCC
T ss_pred             CCCCCCCC
T ss_conf             44332222

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-38  Score=193.34  Aligned_cols=265  Identities=19%  Similarity=0.251  Sum_probs=127.6

Q ss_pred             CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf             68977687379988911107898978962487168879800489999978977799575677510028999899988488
Q 001653          589 MTLQLDGNNFIGEIPESLSKCYMLRGLYLSDNHLFGKIPRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNN  668 (1037)
Q Consensus       589 ~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  668 (1037)
                      +.++-++..++ .+|..+.  +.++.|++++|.++...+.+|.++++|++|++++|.+....|..|..++.|+.+++++|
T Consensus        13 ~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          13 RVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             TEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEECCCCCC-CCCCCCC--CCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEECCCCC
T ss_conf             99985599988-5198889--99798978499189869657604656523112344344523566527985578315687


Q ss_pred             CCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC--CCCHHHCCCCCCCEEECCCCCCCCCCC
Q ss_conf             575469988785766758724750467321322199983499857972788--885100499988688644522245674
Q 001653          669 SIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHG--SIPNRIDRLPQLNYLLLAHNYIKGEIP  746 (1037)
Q Consensus       669 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~  746 (1037)
                      ++...... . ...+..+.+..|.+.......+.....+..++...|....  ..+..+..+++|+.+++++|.+. .++
T Consensus        90 ~l~~l~~~-~-~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~  166 (305)
T d1xkua_          90 QLKELPEK-M-PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIP  166 (305)
T ss_dssp             CCSBCCSS-C-CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCC
T ss_pred             CCCCCCCC-H-HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC
T ss_conf             56767640-0-11132321024610234444540133110000123333346777642234565671203467745-167


Q ss_pred             HHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf             20017997639985688286768976535886767788878862000124102345789999999996513888624752
Q 001653          747 VQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMS  826 (1037)
Q Consensus       747 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  826 (1037)
                      ..+  .++++.+++++|..++..+..+..                                                   
T Consensus       167 ~~~--~~~L~~L~l~~n~~~~~~~~~~~~---------------------------------------------------  193 (305)
T d1xkua_         167 QGL--PPSLTELHLDGNKITKVDAASLKG---------------------------------------------------  193 (305)
T ss_dssp             SSC--CTTCSEEECTTSCCCEECTGGGTT---------------------------------------------------
T ss_pred             CCC--CCCCCEEECCCCCCCCCCHHHHHC---------------------------------------------------
T ss_conf             101--776678989788677888267641---------------------------------------------------


Q ss_pred             CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCC---
Q ss_conf             22233212465589955884556577001276878799767874421025655057558967288882877696000---
Q 001653          827 YYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQL---  903 (1037)
Q Consensus       827 ~~~~~~~l~~l~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~---  903 (1037)
                             .+.++.|++++|.+++..+..+..+++|++|+|++|.|+ .+|+.|..+++|+.|+|++|+|+......|   
T Consensus       194 -------~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~  265 (305)
T d1xkua_         194 -------LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP  265 (305)
T ss_dssp             -------CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred             -------CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCHHHCCCC
T ss_conf             -------341330154455332223454334433224302554002-463110334678989898986576381002672


Q ss_pred             ---CCCCCCCEEECCCCCCE
Q ss_conf             ---07999994764788361
Q 001653          904 ---IVLNTLEVFKVAYNNLS  920 (1037)
Q Consensus       904 ---~~l~~L~~l~ls~N~l~  920 (1037)
                         ..+.+|+.+++++|+++
T Consensus       266 ~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         266 GYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             SCCTTSCCCSEEECCSSSSC
T ss_pred             CHHCCCCCCCEEECCCCCCC
T ss_conf             10021588897889899576

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.7e-38  Score=191.66  Aligned_cols=10  Identities=20%  Similarity=0.102  Sum_probs=3.2

Q ss_pred             CCEEECCCCC
Q ss_conf             8967288882
Q 001653          885 IESLDLSYNL  894 (1037)
Q Consensus       885 L~~LdLs~N~  894 (1037)
                      |+.|+|++|+
T Consensus       274 L~~L~L~~N~  283 (305)
T d1xkua_         274 YSGVSLFSNP  283 (305)
T ss_dssp             CSEEECCSSS
T ss_pred             CCEEECCCCC
T ss_conf             8978898995

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-38  Score=193.71  Aligned_cols=89  Identities=19%  Similarity=0.213  Sum_probs=49.3

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             65589955884556577001276878799767874421025655057558967288882877696000079999947647
Q 001653          836 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVA  915 (1037)
Q Consensus       836 ~l~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls  915 (1037)
                      .++.|++++|++++..+..|..+++|+.+++++|.++++.|+.|.++++|+.||+++|++.+..+..+..+++|+.++++
T Consensus       154 ~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~  233 (284)
T d1ozna_         154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN  233 (284)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred             CHHHCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf             05022314176566256665465634131421143466281676653200023333352210000023554656889811


Q ss_pred             CCCCEECCC
Q ss_conf             883611099
Q 001653          916 YNNLSGKIP  924 (1037)
Q Consensus       916 ~N~l~~~~p  924 (1037)
                      +|++.|.++
T Consensus       234 ~N~l~C~C~  242 (284)
T d1ozna_         234 DNPWVCDCR  242 (284)
T ss_dssp             SSCEECSGG
T ss_pred             CCCCCCCCC
T ss_conf             998878756

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-37  Score=189.43  Aligned_cols=140  Identities=20%  Similarity=0.191  Sum_probs=54.9

Q ss_pred             CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCHHHHCCCCC
Q ss_conf             0048999997897779957567751002899989998848857546998878-576675872475046732132219998
Q 001653          628 RWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFS-PASIEQVHLSKNKIEGRLESIIHDNPH  706 (1037)
Q Consensus       628 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~  706 (1037)
                      ..|.++++|++|++++|.+....+..+.....|+.+++++|.+.++.+..+. ..+++.|++++|.+..+.+.+|.++++
T Consensus        99 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~  178 (284)
T d1ozna_          99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS  178 (284)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             HHHCCCCCCCEEECCCCCCCCCCCCCCCHHCCCCHHHHCCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCCCHHHHCCCCC
T ss_conf             01010102778756885443201353320001211020014314458057404340502231417656625666546563


Q ss_pred             CCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCC
Q ss_conf             3499857972788885100499988688644522245674200179976399856882867
Q 001653          707 LVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSG  767 (1037)
Q Consensus       707 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~  767 (1037)
                      |+.+++++|++++..|..|..+++|+.|++++|++.+..+..|..+++|+.+++++|++.+
T Consensus       179 L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             CCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC
T ss_conf             4131421143466281676653200023333352210000023554656889811998878

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-36  Score=183.72  Aligned_cols=205  Identities=22%  Similarity=0.239  Sum_probs=154.0

Q ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEE
Q ss_conf             89998999884885754699887857667587247504673213221999834998579727888851004999886886
Q 001653          656 QRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLL  735 (1037)
Q Consensus       656 ~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  735 (1037)
                      ....+.+++.+++.++. +|..+ ++.++.|+|++|+++++.+..|.++++|++|++++|.++. ++ .+..+++|+.|+
T Consensus         8 ~~~~~~~v~C~~~~L~~-iP~~l-p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~   83 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTA-LPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLD   83 (266)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEE
T ss_pred             CCCCCEEEECCCCCCCE-ECCCC-CCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC-CC-CCCCCCCCCCCC
T ss_conf             26898699806999886-19675-7688989884992898597786345655221356654444-31-111122321111


Q ss_pred             CCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             44522245674200179976399856882867689765358867677888788620001241023457899999999965
Q 001653          736 LAHNYIKGEIPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKE  815 (1037)
Q Consensus       736 L~~n~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  815 (1037)
                      +++|++. ..+..+..+++|+.+++++|.+....+..+.                                         
T Consensus        84 Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----------------------------------------  121 (266)
T d1p9ag_          84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALR-----------------------------------------  121 (266)
T ss_dssp             CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTT-----------------------------------------
T ss_pred             CCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCEEECCCCC-----------------------------------------
T ss_conf             1222221-1111212222222222222311011001122-----------------------------------------


Q ss_pred             CEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCEEECCCCCC
Q ss_conf             13888624752222332124655899558845565770012768787997678744210256550575589672888828
Q 001653          816 ETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL  895 (1037)
Q Consensus       816 ~~~~~~~~~~~~~~~~~~l~~l~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l  895 (1037)
                                       .+..+..+++++|.+++..+..+..++.++.+++++|++++..++.|..+++|++|||++|+|
T Consensus       122 -----------------~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L  184 (266)
T d1p9ag_         122 -----------------GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL  184 (266)
T ss_dssp             -----------------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             -----------------CCCCCCCCCCCCCCCCEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf             -----------------221111221243421022123332211100000001565223720013421242343013978


Q ss_pred             CCCCCCCCCCCCCCCEEECCCCCCEECCC
Q ss_conf             77696000079999947647883611099
Q 001653          896 HGKIPPQLIVLNTLEVFKVAYNNLSGKIP  924 (1037)
Q Consensus       896 ~~~~p~~~~~l~~L~~l~ls~N~l~~~~p  924 (1037)
                      + .+|..+..++.|+.++|++|+|.|.+.
T Consensus       185 ~-~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         185 Y-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             C-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             C-CCCHHHCCCCCCCEEEECCCCCCCCCC
T ss_conf             5-568667778889999836999878864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-36  Score=180.68  Aligned_cols=203  Identities=24%  Similarity=0.234  Sum_probs=122.4

Q ss_pred             CCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEEC
Q ss_conf             76675872475046732132219998349985797278888510049998868864452224567420017997639985
Q 001653          681 ASIEQVHLSKNKIEGRLESIIHDNPHLVTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGEIPVQLCQLKEVRLIDL  760 (1037)
Q Consensus       681 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  760 (1037)
                      ..+.+++.+++.++.+++ .+.  +++++|+|++|.+++..+..|..+++|+.|++++|+|+. ++ .+..+++|+.|++
T Consensus        10 ~~~~~v~C~~~~L~~iP~-~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPP-DLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCSSCCS-CCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEEC
T ss_pred             CCCEEEECCCCCCCEECC-CCC--CCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC-CC-CCCCCCCCCCCCC
T ss_conf             898699806999886196-757--688989884992898597786345655221356654444-31-1111223211111


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEE
Q ss_conf             68828676897653588676778887886200012410234578999999999651388862475222233212465589
Q 001653          761 SHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGI  840 (1037)
Q Consensus       761 s~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L  840 (1037)
                      ++|+++. .+..+.                                                          .++.|+.+
T Consensus        85 s~N~l~~-~~~~~~----------------------------------------------------------~l~~L~~L  105 (266)
T d1p9ag_          85 SHNQLQS-LPLLGQ----------------------------------------------------------TLPALTVL  105 (266)
T ss_dssp             CSSCCSS-CCCCTT----------------------------------------------------------TCTTCCEE
T ss_pred             CCCCCCC-CCCCCC----------------------------------------------------------CCCCCCCC
T ss_conf             2222211-111212----------------------------------------------------------22222222


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCE
Q ss_conf             95588455657700127687879976787442102565505755896728888287769600007999994764788361
Q 001653          841 DLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLS  920 (1037)
Q Consensus       841 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~  920 (1037)
                      ++++|.+.+..+..+..+.+++.|++++|.++...+..+..+++++.+++++|++++..+..+..+++|+.|+|++|+++
T Consensus       106 ~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
T ss_conf             22223110110011222211112212434210221233322111000000015652237200134212423430139785


Q ss_pred             ECCCC-CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             10999-98788878642368888889999
Q 001653          921 GKIPD-RAQFSTFEEDSYEGNPFLCGQPL  948 (1037)
Q Consensus       921 ~~~p~-~~~~~~~~~~~~~~Np~~c~~~~  948 (1037)
                       .+|. ......+....+.||||.|+|.+
T Consensus       186 -~lp~~~~~~~~L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         186 -TIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             -CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             -CCCHHHCCCCCCCEEEECCCCCCCCCCH
T ss_conf             -5686677788899998369998788643

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.6e-34  Score=171.68  Aligned_cols=61  Identities=26%  Similarity=0.354  Sum_probs=25.3

Q ss_pred             CCCEEECCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCC----CHHCCCCCCCCCEEECCCCCC
Q ss_conf             7878968799656533311268630899866585899868983----001038999985862799737
Q 001653           11 QLESLDLSWNNIAGCVQNESLERLSRLTNLKFLYLNDNHFNNS----IFSSLGGLSSLRHLSLADNRL   74 (1037)
Q Consensus        11 ~L~~L~Ls~~~i~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~----l~~~l~~l~~L~~L~l~~~~~   74 (1037)
                      +|++||++++++++.   .+.+-+..+++++.|+|++|.+++.    +...+..+++|++|++++|.+
T Consensus         3 ~l~~ld~~~~~i~~~---~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i   67 (460)
T d1z7xw1           3 DIQSLDIQCEELSDA---RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL   67 (460)
T ss_dssp             EEEEEEEESCCCCHH---HHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC
T ss_pred             CCCEEEEECCCCCHH---HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCC
T ss_conf             877798208958868---99999976779999982899998899999999985399988897959859

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.97  E-value=5.5e-27  Score=139.19  Aligned_cols=55  Identities=31%  Similarity=0.466  Sum_probs=25.8

Q ss_pred             CCCCCEEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCE
Q ss_conf             687879976787442102565505755896728888287769600007999994764788361
Q 001653          858 LTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLS  920 (1037)
Q Consensus       858 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~  920 (1037)
                      +++|++|++++|+|+ .+|.   .+++|+.|+|++|+|+. +|..   +++|+.|++++|+++
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~~-l~~~---~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLAE-VPEL---PQNLKQLHVEYNPLR  337 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred             CCCCCEEECCCCCCC-CCCC---CCCCCCEEECCCCCCCC-CCCC---CCCCCEEECCCCCCC
T ss_conf             898898979799168-3566---54879989899996875-4532---288898987699189

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-33  Score=169.32  Aligned_cols=10  Identities=10%  Similarity=0.119  Sum_probs=3.4

Q ss_pred             CCEEECCCCC
Q ss_conf             9999765876
Q 001653          342 LRVLDVSYNQ  351 (1037)
Q Consensus       342 L~~L~Ls~n~  351 (1037)
                      |+.|++++|.
T Consensus        86 L~~L~L~~n~   95 (460)
T d1z7xw1          86 IQKLSLQNCC   95 (460)
T ss_dssp             CCEEECTTSC
T ss_pred             CCEEECCCCC
T ss_conf             7887788877

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.97  E-value=4.8e-27  Score=139.48  Aligned_cols=54  Identities=31%  Similarity=0.518  Sum_probs=26.4

Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCC
Q ss_conf             46558995588455657700127687879976787442102565505755896728888287
Q 001653          835 TSMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH  896 (1037)
Q Consensus       835 ~~l~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  896 (1037)
                      +.|++|++++|+|+ .+|..   +++|+.|+|++|+|+ .+|.   .+.+|++|++++|+|+
T Consensus       284 ~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~---~~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         284 PSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR  337 (353)
T ss_dssp             TTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS
T ss_pred             CCCCEEECCCCCCC-CCCCC---CCCCCEEECCCCCCC-CCCC---CCCCCCEEECCCCCCC
T ss_conf             98898979799168-35665---487998989999687-5453---2288898987699189

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=3e-27  Score=140.41  Aligned_cols=181  Identities=20%  Similarity=0.275  Sum_probs=103.1

Q ss_pred             CEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCC-CCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             4998579727888851004999886886445222456-742001799763998568828676897653588676778887
Q 001653          708 VTLDLSYNSLHGSIPNRIDRLPQLNYLLLAHNYIKGE-IPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEV  786 (1037)
Q Consensus       708 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~  786 (1037)
                      +.++.+++.++ .+|..+.  +++++|+|++|+|++. .+..|..+++|+.|++++|.+....+..+..           
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~-----------   76 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-----------   76 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred             CEEEEECCCCC-CCCCCCC--CCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC-----------
T ss_conf             99997089967-0298989--787889848987755302002578762721301363221212122211-----------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             88620001241023457899999999965138886247522223321246558995588455657700127687879976
Q 001653          787 APTSIWCRRASVYRSACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQIGYLTRIHALNL  866 (1037)
Q Consensus       787 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  866 (1037)
                                                                     ++.|+.|+|++|+|++..|..|..+++|+.|+|
T Consensus        77 -----------------------------------------------~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L  109 (192)
T d1w8aa_          77 -----------------------------------------------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             -----------------------------------------------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             -----------------------------------------------CCCCCEEEECCCCCCCCCHHHHHCCCCCCCCCC
T ss_conf             -----------------------------------------------222210100355344349799807974655245


Q ss_pred             CCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             78744210256550575589672888828776960000799999476478836110999987888786423688888899
Q 001653          867 SHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVAYNNLSGKIPDRAQFSTFEEDSYEGNPFLCGQ  946 (1037)
Q Consensus       867 s~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~Np~~c~~  946 (1037)
                      ++|+|+++.|+.|..+++|++++|++|.+....+..+ ....+....+..|.+++..|..  +....-.++..|.+.|.+
T Consensus       110 ~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~~--l~~~~l~~L~~n~l~C~~  186 (192)
T d1w8aa_         110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSK--VRDVQIKDLPHSEFKCSS  186 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSSTT--TTTSBGGGSCTTTCCCCC
T ss_pred             CCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCCCCCCEEECCCHH--HCCCEEEECCHHHCCCCC
T ss_conf             7745353597785687533420003644343530277-7642354035689827689843--369886144875575899


Q ss_pred             CCCCCC
Q ss_conf             998999
Q 001653          947 PLSKSC  952 (1037)
Q Consensus       947 ~~~~~c  952 (1037)
                      +-...|
T Consensus       187 ~~~~g~  192 (192)
T d1w8aa_         187 ENSEGC  192 (192)
T ss_dssp             C---CC
T ss_pred             CCCCCC
T ss_conf             888889

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=5.1e-26  Score=134.63  Aligned_cols=38  Identities=16%  Similarity=0.345  Sum_probs=13.2

Q ss_pred             CCCCCCEEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCC
Q ss_conf             7687879976787442102565505755896728888287
Q 001653          857 YLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLH  896 (1037)
Q Consensus       857 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  896 (1037)
                      .+++|+.|+|++|.+++..  .++++++|++|+|++|+++
T Consensus       171 ~l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         171 NLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             TCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCC
T ss_pred             CCCCCEECCCCCCCCCCCH--HHCCCCCCCEEECCCCCCC
T ss_conf             6463356445888417785--3447999998979599689

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.7e-26  Score=136.83  Aligned_cols=80  Identities=16%  Similarity=-0.026  Sum_probs=43.6

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             65589955884556577001276878799767874421025655057558967288882877696000079999947647
Q 001653          836 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVA  915 (1037)
Q Consensus       836 ~l~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls  915 (1037)
                      .+..+++++|++++..+..+......+.+++++|+++.+.++.|.++++|+.|||++|+++...+..+..++.|+++++.
T Consensus       154 ~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             SCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             CCEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf             10012200123333222222201110121235432464247886689999989897992894597797377134147678

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.2e-26  Score=134.59  Aligned_cols=32  Identities=16%  Similarity=0.173  Sum_probs=10.7

Q ss_pred             CCCCCCCCEEECCCCCCCCCHHHHHHCCCCCC
Q ss_conf             12768787997678744210256550575589
Q 001653          855 IGYLTRIHALNLSHNNLTGTIPTTFSNLKQIE  886 (1037)
Q Consensus       855 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  886 (1037)
                      |..+++|+.|++++|+|+.+.+..|.++++|+
T Consensus       197 f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~  228 (242)
T d1xwdc1         197 FHGASGPVILDISRTRIHSLPSYGLENLKKLR  228 (242)
T ss_dssp             TTTSCCCSEEECTTSCCCCCCSSSCTTCCEEE
T ss_pred             HCCCCCCCEEECCCCCCCCCCHHHHCCCCCCC
T ss_conf             66899999898979928945977973771341

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.1e-25  Score=131.78  Aligned_cols=88  Identities=22%  Similarity=0.261  Sum_probs=42.7

Q ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHCCCCCCCCEEECCCCC-CCCCCCHHHCCC
Q ss_conf             9999858877688567633452113445211002569888656787233330899965199634654-665111000026
Q 001653           85 SLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGGSGIPRIDGSKVLQSIGSLPSLKTLYLSHTK-FKGTVVNQKLHN  163 (1037)
Q Consensus        85 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~~~i~~~~~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~l~~  163 (1037)
                      ...+|++||++++.+........+..+++|+.|+++++.++    ...+..++.+++|++|++++|. +++.........
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~----~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~  119 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS----DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS  119 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC----HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred             CCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC----CHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             67878878898984577799999974877651452346798----67899985189975715100134123554036578


Q ss_pred             CCCCCEEECCCCC
Q ss_conf             8877379806786
Q 001653          164 FTNLEELILDESD  176 (1037)
Q Consensus       164 ~~~L~~L~l~~~~  176 (1037)
                      +++|++|++++|.
T Consensus       120 ~~~L~~L~ls~c~  132 (284)
T d2astb2         120 CSRLDELNLSWCF  132 (284)
T ss_dssp             CTTCCEEECCCCT
T ss_pred             HHHCCCCCCCCCC
T ss_conf             8743565224533

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=1.5e-25  Score=132.51  Aligned_cols=84  Identities=12%  Similarity=0.204  Sum_probs=35.2

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             65589955884556577001276878799767874421025655057558967288882877696000079999947647
Q 001653          836 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVA  915 (1037)
Q Consensus       836 ~l~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls  915 (1037)
                      .|+.|+|++|+|++..+..|..+++|+.|+|++|.+....+..+ -...++.+.++.|.+....|..   +..++.++++
T Consensus       103 ~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~~---l~~~~l~~L~  178 (192)
T d1w8aa_         103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLP  178 (192)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSSTT---TTTSBGGGSC
T ss_pred             CCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHCCCCCCEEECCCHH---HCCCEEEECC
T ss_conf             46552457745353597785687533420003644343530277-7642354035689827689843---3698861448


Q ss_pred             CCCCEECC
Q ss_conf             88361109
Q 001653          916 YNNLSGKI  923 (1037)
Q Consensus       916 ~N~l~~~~  923 (1037)
                      .|.+.|..
T Consensus       179 ~n~l~C~~  186 (192)
T d1w8aa_         179 HSEFKCSS  186 (192)
T ss_dssp             TTTCCCCC
T ss_pred             HHHCCCCC
T ss_conf             75575899

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-25  Score=133.15  Aligned_cols=58  Identities=21%  Similarity=0.291  Sum_probs=19.6

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf             98586279973778558011389999858877688567633452113445211002569
Q 001653           63 SLRHLSLADNRLNGSIDIKGLNSLSNLEELDMTGNAIENLVVPKDFRGLRKLNTLYLGG  121 (1037)
Q Consensus        63 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~  121 (1037)
                      +|++|+++++.+........+..+++|++|+++++.+.+.. ...+..++.|+.|++++
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~-~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPI-VNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHH-HHHHTTCTTCSEEECTT
T ss_pred             CCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHH-HHHHHCCCCCCCCCCCC
T ss_conf             78878898984577799999974877651452346798678-99985189975715100

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.92  E-value=8.4e-24  Score=124.24  Aligned_cols=74  Identities=27%  Similarity=0.469  Sum_probs=31.7

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             65589955884556577001276878799767874421025655057558967288882877696000079999947647
Q 001653          836 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVA  915 (1037)
Q Consensus       836 ~l~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls  915 (1037)
                      .++.+++++|.+++  +..+..+++|+.+++++|++++..+  +.++++|++|+|++|+++. +| .+..+++|++|+|+
T Consensus       135 ~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         135 QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             TCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             CCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCC-CH-HHCCCCCCCEEECC
T ss_conf             12221122233345--4310001332100134643025645--3678989999897998998-72-11699998999711

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.91  E-value=3e-23  Score=121.63  Aligned_cols=15  Identities=40%  Similarity=0.702  Sum_probs=4.8

Q ss_pred             CCCCCEEECCCCCCC
Q ss_conf             687879976787442
Q 001653          858 LTRIHALNLSHNNLT  872 (1037)
Q Consensus       858 l~~L~~L~Ls~N~l~  872 (1037)
                      +++|+.|+|++|.|+
T Consensus       177 l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         177 LTKLQNLYLSKNHIS  191 (210)
T ss_dssp             CTTCCEEECCSSCCC
T ss_pred             CCCCCEEECCCCCCC
T ss_conf             898999989799899

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.90  E-value=8.9e-23  Score=119.41  Aligned_cols=16  Identities=44%  Similarity=0.636  Sum_probs=5.3

Q ss_pred             HCCCCCCEEECCCCCC
Q ss_conf             0575589672888828
Q 001653          880 SNLKQIESLDLSYNLL  895 (1037)
Q Consensus       880 ~~l~~L~~LdLs~N~l  895 (1037)
                      +++++|+.||+++|++
T Consensus       169 ~~l~~L~~L~ls~N~i  184 (199)
T d2omxa2         169 ANLTTLERLDISSNKV  184 (199)
T ss_dssp             TTCTTCCEEECCSSCC
T ss_pred             CCCCCCCEEECCCCCC
T ss_conf             6799899997879979

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.89  E-value=5e-24  Score=125.28  Aligned_cols=244  Identities=15%  Similarity=0.136  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCCCEEECCCCCCCC----CCCCCCCCCCCCCEEECCCCCCCCC----------CCCCCCCCCCCCEEECCC
Q ss_conf             89111078989789624871688----7980048999997897779957567----------751002899989998848
Q 001653          602 IPESLSKCYMLRGLYLSDNHLFG----KIPRWLGNLPTLQYIIMPNNNLEGP----------IPIEFCQRDSLKILDLSN  667 (1037)
Q Consensus       602 ~~~~~~~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~~~~~~L~~L~l~~  667 (1037)
                      +...+.....++.|++++|.+..    .+...+...++|+.+.++++.....          +...+..+++|+.|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             99999638997889784983778999999999985899888888777543345421067879998875477756330000


Q ss_pred             CCCCCCCCCCCC-----CCCCCEEECCCCCCCCCCHHHH-------------CCCCCCCEEECCCCCCC----CCCCHHH
Q ss_conf             857546998878-----5766758724750467321322-------------19998349985797278----8885100
Q 001653          668 NSIFGTLPSCFS-----PASIEQVHLSKNKIEGRLESII-------------HDNPHLVTLDLSYNSLH----GSIPNRI  725 (1037)
Q Consensus       668 n~~~~~~~~~~~-----~~~L~~L~L~~n~l~~~~~~~~-------------~~~~~L~~L~Ls~N~l~----~~~~~~~  725 (1037)
                      |.+.......+.     .++|+.|++++|.+.......+             ...+.|+.+++++|.+.    ..+...+
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l  182 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  182 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHCCCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHH
T ss_conf             13455433310111002343210000024666654311112122221100014676421110136501355433221111


Q ss_pred             CCCCCCCEEECCCCCCCCC-----CCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             4999886886445222456-----74200179976399856882867689765358867677888788620001241023
Q 001653          726 DRLPQLNYLLLAHNYIKGE-----IPVQLCQLKEVRLIDLSHNNLSGRIPPCLVNTSLNEGYHGEVAPTSIWCRRASVYR  800 (1037)
Q Consensus       726 ~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  800 (1037)
                      ...++++.+++++|.+...     +...+...+.|+.|++++|.++......+...-                       
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l-----------------------  239 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL-----------------------  239 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG-----------------------
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCC-----------------------
T ss_conf             233321335433322222223200243321101211222333322222222344433-----------------------


Q ss_pred             CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC------CCCCCCCEEECCCCCCCCC
Q ss_conf             4578999999999651388862475222233212465589955884556577001------2768787997678744210
Q 001653          801 SACLPGQSSPPMGKEETVQFTTKNMSYYYQGRILTSMSGIDLSCNKLTGEIPTQI------GYLTRIHALNLSHNNLTGT  874 (1037)
Q Consensus       801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~Ls~N~l~~~~p~~~------~~l~~L~~L~Ls~N~l~~~  874 (1037)
                                                     ...+.|+.|+|++|.|++.....+      .....|+.|++++|+|+..
T Consensus       240 -------------------------------~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~  288 (344)
T d2ca6a1         240 -------------------------------KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD  288 (344)
T ss_dssp             -------------------------------GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred             -------------------------------CCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCHH
T ss_conf             -------------------------------2322111103004756715667888776315688889898989869808


Q ss_pred             HHHHHH-----CCCCCCEEECCCCCCCCCC
Q ss_conf             256550-----5755896728888287769
Q 001653          875 IPTTFS-----NLKQIESLDLSYNLLHGKI  899 (1037)
Q Consensus       875 ~p~~~~-----~l~~L~~LdLs~N~l~~~~  899 (1037)
                      ....+.     ..++|+.|+|++|++....
T Consensus       289 ~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~  318 (344)
T d2ca6a1         289 AVRTLKTVIDEKMPDLLFLELNGNRFSEED  318 (344)
T ss_dssp             HHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHHHHHHCCCCCCCEEECCCCCCCCCC
T ss_conf             999999999703899998978798089862

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.2e-20  Score=109.39  Aligned_cols=112  Identities=16%  Similarity=0.196  Sum_probs=80.4

Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             558995588455657700127687879976787-4421025655057558967288882877696000079999947647
Q 001653          837 MSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHN-NLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVFKVA  915 (1037)
Q Consensus       837 l~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls  915 (1037)
                      .+.+++++++++ ..|..+..+++++.|++++| .|+.+.++.|.++++|+.|+|++|+|++..+..|..+++|+.|+|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCEEEECCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECC
T ss_conf             996985289976-5860025765657431689866443692122566666721620212477420111245543333226


Q ss_pred             CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8836110999987888786423688888899998
Q 001653          916 YNNLSGKIPDRAQFSTFEEDSYEGNPFLCGQPLS  949 (1037)
Q Consensus       916 ~N~l~~~~p~~~~~~~~~~~~~~~Np~~c~~~~~  949 (1037)
                      +|+++...+...+...+....+.||||.|+|.+.
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~~~  122 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCALR  122 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGH
T ss_pred             CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHH
T ss_conf             7878515745633532124335798633881179

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.1e-19  Score=103.54  Aligned_cols=131  Identities=19%  Similarity=0.173  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCC
Q ss_conf             80048999997897779957567751002899989998848857546998878576675872475046732132219998
Q 001653          627 PRWLGNLPTLQYIIMPNNNLEGPIPIEFCQRDSLKILDLSNNSIFGTLPSCFSPASIEQVHLSKNKIEGRLESIIHDNPH  706 (1037)
Q Consensus       627 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  706 (1037)
                      ...|.+...+++|++++|+++ .++..+..++.|+.|++++|.+... +....+++|+.|++++|+++.+.+..+..+++
T Consensus        11 ~~~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          11 AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             SCEEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             HHHCCCCCCCCEEECCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCC-CCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             175168574848978899788-6576200414599898979978764-77445761306431021345777632233453


Q ss_pred             CCEEECCCCCCCCCCC-HHHCCCCCCCEEECCCCCCCCCC---CHHHCCCCCCCEEE
Q ss_conf             3499857972788885-10049998868864452224567---42001799763998
Q 001653          707 LVTLDLSYNSLHGSIP-NRIDRLPQLNYLLLAHNYIKGEI---PVQLCQLKEVRLID  759 (1037)
Q Consensus       707 L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~  759 (1037)
                      |+.|++++|++..... ..+..+++|+.+++++|.+....   +..+..+++|+.||
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             CCCCEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHCCCCCEEC
T ss_conf             443420300016654211001365320664079963456106999998789958337

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=1.1e-18  Score=100.14  Aligned_cols=82  Identities=26%  Similarity=0.354  Sum_probs=31.6

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEEC
Q ss_conf             6558995588455657700127687879976787442102565505755896728888287769-600007999994764
Q 001653          836 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKI-PPQLIVLNTLEVFKV  914 (1037)
Q Consensus       836 ~l~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~-p~~~~~l~~L~~l~l  914 (1037)
                      .++.||+++|.|+ .+|..++.+++|+.|++++|.|+.. | .+..+++|+.|++++|+++... ...+..++.|+.+++
T Consensus        21 ~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l   97 (124)
T d1dcea3          21 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL   97 (124)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred             CCCEEECCCCCCC-CCHHHHHHHHCCCCCCCCCCCCCCC-C-CCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCEEEC
T ss_conf             8898979787168-6521565543135453243211235-7-41233555768888986588888256537999999989


Q ss_pred             CCCCCE
Q ss_conf             788361
Q 001653          915 AYNNLS  920 (1037)
Q Consensus       915 s~N~l~  920 (1037)
                      ++|+++
T Consensus        98 ~~N~i~  103 (124)
T d1dcea3          98 QGNSLC  103 (124)
T ss_dssp             TTSGGG
T ss_pred             CCCCCC
T ss_conf             799688

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.76  E-value=1.8e-20  Score=108.64  Aligned_cols=59  Identities=24%  Similarity=0.297  Sum_probs=26.1

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHH-HHHHCCCCCCEEECCCCCCC
Q ss_conf             65589955884556577001276878799767874421025-65505755896728888287
Q 001653          836 SMSGIDLSCNKLTGEIPTQIGYLTRIHALNLSHNNLTGTIP-TTFSNLKQIESLDLSYNLLH  896 (1037)
Q Consensus       836 ~l~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~LdLs~N~l~  896 (1037)
                      .|+.|++++|.++..  ..+..+++|+.|++++|.|+.... ..+..+++|+.|++++|++.
T Consensus        94 ~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_          94 TLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             CCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCEEECCCCCCC
T ss_conf             233333333222222--222222234111234102125542212367776302342798434

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.2e-17  Score=95.40  Aligned_cols=89  Identities=16%  Similarity=0.162  Sum_probs=75.1

Q ss_pred             CCCCCEEECCCC-CCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             246558995588-4556577001276878799767874421025655057558967288882877696000079999947
Q 001653          834 LTSMSGIDLSCN-KLTGEIPTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGKIPPQLIVLNTLEVF  912 (1037)
Q Consensus       834 l~~l~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l  912 (1037)
                      ++.++.|++++| .++...+..|..+++|+.|+|++|+|+++.|+.|.++++|+.|||++|+|+...+..+.. ..|+.+
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L  108 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQEL  108 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEE
T ss_pred             CCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHCC-CCCCCC
T ss_conf             6565743168986644369212256666672162021247742011124554333322678785157456335-321243


Q ss_pred             ECCCCCCEECC
Q ss_conf             64788361109
Q 001653          913 KVAYNNLSGKI  923 (1037)
Q Consensus       913 ~ls~N~l~~~~  923 (1037)
                      +|++|++.+.+
T Consensus       109 ~L~~Np~~C~C  119 (156)
T d2ifga3         109 VLSGNPLHCSC  119 (156)
T ss_dssp             ECCSSCCCCCG
T ss_pred             CCCCCCCCCCC
T ss_conf             35798633881

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.1e-11  Score=66.03  Aligned_cols=63  Identities=24%  Similarity=0.178  Sum_probs=26.5

Q ss_pred             CCCEEECCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCC
Q ss_conf             6558995588455657--70012768787997678744210256550575589672888828776
Q 001653          836 SMSGIDLSCNKLTGEI--PTQIGYLTRIHALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLHGK  898 (1037)
Q Consensus       836 ~l~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~  898 (1037)
                      .|+.|||++|+|+...  +..+..+++|+.|+|++|.|+...+..+.....|+.|++++|.++..
T Consensus        66 ~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          66 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             TCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             CCCEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCC
T ss_conf             87886377766667731588986588561000435721342344222033104266489976767

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.2e-11  Score=67.23  Aligned_cols=16  Identities=31%  Similarity=0.333  Sum_probs=5.5

Q ss_pred             CCCCCCEEECCCCCCC
Q ss_conf             5755896728888287
Q 001653          881 NLKQIESLDLSYNLLH  896 (1037)
Q Consensus       881 ~l~~L~~LdLs~N~l~  896 (1037)
                      .+++|+.|||++|.|+
T Consensus        89 ~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          89 KAPNLKILNLSGNELK  104 (162)
T ss_dssp             HSTTCCCCCCTTSCCC
T ss_pred             HCCCCCCCCCCCCCCC
T ss_conf             5885610004357213

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.87  E-value=9e-10  Score=58.37  Aligned_cols=17  Identities=18%  Similarity=0.282  Sum_probs=6.5

Q ss_pred             CCCCCCCCEEECCCCCC
Q ss_conf             38999985862799737
Q 001653           58 LGGLSSLRHLSLADNRL   74 (1037)
Q Consensus        58 l~~l~~L~~L~l~~~~~   74 (1037)
                      +.....|++|++++|.+
T Consensus        40 L~~n~~L~~L~Ls~n~l   56 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAI   56 (167)
T ss_dssp             HTTCSCCCEEECTTSCC
T ss_pred             HHHCCCCCEEECCCCCC
T ss_conf             76377645401201562

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.72  E-value=3.4e-09  Score=55.67  Aligned_cols=17  Identities=18%  Similarity=0.272  Sum_probs=6.6

Q ss_pred             CCCCCCCCEEECCCCCC
Q ss_conf             38999985862799737
Q 001653           58 LGGLSSLRHLSLADNRL   74 (1037)
Q Consensus        58 l~~l~~L~~L~l~~~~~   74 (1037)
                      +...++|++|++++|.+
T Consensus        42 l~~n~~L~~L~Ls~n~l   58 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRS   58 (166)
T ss_dssp             HTTCCSCCEEECTTSCC
T ss_pred             HHCCCCCCEEECCCCCC
T ss_conf             84198257430158961