Citrus Sinensis ID: 001656

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------

MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSKLPTILYTSRTHSQLRQVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRVADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVREADANAADVLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFFREERICGSTNLKLIKTEVSGDVRELKPVDLLDKISLEEVPSSTPAVDQACYSLHEVKNRNTSSHSGEIVPANRSSLSPYKGIWASELKNSSDLIQFEKKLLLSGRKSIQYRDHEFIDLTSNSSLHAKPRKEELIAPCSTKKRKVLISESDQMQCVKKISEIASDAESSQPSSFIPITNKVKHEKPQISDSGSRIIAQGSAPSKVDGTTYRIEAEIQSEKSKGSHSSAPPCGGEETKGSAFLIQVQEKLSATEYKEFVGFMKAMKSKAMKISHVLQSIAKLFAGPERLPLLRRFKDYVPAKYHPLYEQYLMNNS

cccEEEccEEEcccccccHHHHHHHHHHHHHHHcccccEEcccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHccccccEEEEcccccccccHHHHHHccccHHHHHHHHHHccccccccccHHHHHHHHcccccccccccHHHHHHHHHHcccccHHHHHcccccccEEEEcccccccHHHHHHHcccccccEEEEEccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccEEEEEEEccccccccccccccEEEEEEEccHHHHHHHHHcccccEEEEEccccccHHHHHHHHccccccEEEcccccccccEEEEEEEccccccEEEEEEEccccHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHcccccHHHHHHHHHcccccEEcccccccHHHHHHHHHHHHcccccccEEEEEEcccccccccccccccccEEEEEcccccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEcccccccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHcccccccccHHHHHHHHHHcc

ccEEEEccEEEEccccccHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHHcccHccHHHHHccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHccccccEEEEcccccccccHcHHHcccccHHHHHHHHHHHHHHHHccHcccHHHHcccccccccccccHHHHHHHcccccccHHHHHHHHHHcccEEEEEcHHcccHHHHHHHcHcccccEEEEEccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHccccHHHHHHHHcccccHHHHHHHcccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccHHHccEEEEEEccccccccccccccccEEEEEEccHHHHHHHHHHccccEEEEEcccccccHHHHHHccccccEEEcccEEEccccEEEEEEEccccccEEcccccccccHHHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHcccccHHHHHHHHHHcccEEEcccccHHHHHHHHHHHHHHHccccccEEEEEEEcccEccccccccccccEEEEEcccccccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccHcccHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccHHHHHcccccccccccccccccccccccccccHHcccccccccccccccccccccccccccEEEEcccccccccccccccccccccHHHHHEEEccccccccccccccccccccccHcccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHccHHccHHHHHHHHccc

mptykirgidvefpfeaydCQLVYMEKVIQSLQNKCNAllesptgtgkTLCLLCATLAWRKSlgsfstlgsqvnnqisgsqssvnssqsgdsklptilyTSRTHSQLRQVIQELktsnyrpkmviLGSREQLCIHREVSLLRGSAQNNACRFLckkgtnrrcnhhSRVAdymknnphlgdepidiedlvnigrtfgpcpyfmtrelqKTVDIVfapynylidpwfrkglgvewknsILIFDEAHNLEGICADAASFDLSSGLLTACISEakncidisstrrgqssdetlnpDNFAILRALLLKLEKRIAevpinskelgftkpgpYIYELLADLNITQETAYKLIDIVEVAAELLQEDklqnkksttACRIESISNILKIIFRdkgtahsaYYRVHVREADANAADVLKGKasrtlswwcfnpgiamqefsrLEVGSIIltsgtlspmdSFAQELKlnfplrvenphvitskqiwagivpvgpsgyllnssyrnrdsIEYKQELGNTIVNIArivpdglliffpsyylMDQCIAcwkntshgnltTIWERICkhkkpvveprqsslfpLAIEDYMAKLKDTSTSGAVFFAVCRGkvsegldfadhAGRAVVItgmpfatmtdpkvrLKREYLDLQaqsqggeyketklsflsgedwynqQASRAVNQAVGRVIrhrhdygaiifcderfahpsrksqislwiqpHIQCYSKFGDVVYTLTRFFreericgstnlkliktevsgdvrelkpvdlldkisleevpsstpavdqACYSLhevknrntsshsgeivpanrsslspykgiwaselknssDLIQFEKKLLLSGRksiqyrdhefidltsnsslhakprkeeliapcstkkrKVLISESDQMQCVKKISEIAsdaessqpssfipitnkvkhekpqisdsgsriiaqgsapskvdgttYRIEAEIQsekskgshssappcggeetkgSAFLIQVQEKLSATEYKEFVGFMKAMKSKAMKISHVLQSIAKLfagperlpllrrfkdyvpakyhplyeqylmnns

mptykirgidvefpFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGsqssvnssqsgdSKLPTILYTSRTHSQLRQVIQelktsnyrpkmVILGSREQLCIHREVsllrgsaqnNACRFLCKkgtnrrcnhhSRVADymknnphlGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDIsstrrgqssdetlnpDNFAILRALLLKLEKRIAevpinskelgftkpGPYIYELLADLNITQETAYKLIDIVEVAAELLQedklqnkksttacriESISNILKIIFRDKGTAHSAYYRVHVREADANAADVLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVitskqiwagivPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKkpvveprqsslFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLqaqsqggeykeTKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFFReericgstnlkliktevsgdvrelkpVDLLDkisleevpsstpavDQACYSLHEVknrntsshsgeivpanrsslspYKGIWASELKNSSDLIQFEKKLLLSGRKSIQYRDHEFIDltsnsslhakprkeeliapcstkkrkvlisesdqmQCVKKISEiasdaessqpssfipitnkvkhekpqisdsgsriiaqgsapskvdgttYRIEAEiqsekskgshssAPPCGGEETKGSAFLIQVQEKLSATEYKEFVGFMKAMKSKAMKISHVLQSIAKLFAGPERLPLLRRFKDyvpakyhplyeqylmnns

MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLgsqvnnqisgsqssvnssqsgdsKLPTILYTSRTHSQLRQVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRVADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVREADANAADVLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFFREERICGSTNLKLIKTEVSGDVRELKPVDLLDKISLEEVPSSTPAVDQACYSLHEVKNRNTSSHSGEIVPANRSSLSPYKGIWASELKNSSDLIQFEKKLLLSGRKSIQYRDHEFIDLTSNSSLHAKPRKEELIAPCSTKKRKVLISESDQMQCVKKISEIASDAESSQPSSFIPITNKVKHEKPQISDSGSRIIAQGSAPSKVDGTTYRIEAEIQSEKSKGSHSSAPPCGGEETKGSAFLIQVQEKLSATEYKEFVGFmkamkskamkISHVLQSIAKLFAGPERLPLLRRFKDYVPAKYHPLYEQYLMNNS

***YKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFST****************************ILYTSRTHSQLRQVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRVADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDI***************DNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVREADANAADVLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQ*******YKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFFREERICGSTNLKLIKTEVSGDVRELKPVDLLDKISL*************CY***************************YKGIWASELKNSSDLIQFEKKLLLSGRKSIQYRDHEFIDL************************************************************************************************************************AFLIQVQEKLSATEYKEFVGFMKAMKSKAMKISHVLQSIAKLFAGPERLPLLRRFKDYVPAKYHPLYEQYL****

*PTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGT**TLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSKLPTILYTSRTHSQLRQVIQELKTSNYRPKMVILGSREQLCIHREVS**************************SRVADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDIS***********LNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYKLIDIVEVAAELLQ*************RIESISNILKIIFRDKGTAHSAYYRVHVREADANAADVLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVE********LAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQ****KETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFF************************************************************************************************************************************************************************************************************************************************LIQVQEKLSATEYKEFVGFMKAMKSKAMKISHVLQSIAKLFAGPERLPLLRRFKDYVPAKYHPLYE*YLM***

MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNN*****************KLPTILYTSRTHSQLRQVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRVADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDIS*********ETLNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVREADANAADVLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFFREERICGSTNLKLIKTEVSGDVRELKPVDLLDKISLEEVPSSTPAVDQACYSLHEVK**********IVPANRSSLSPYKGIWASELKNSSDLIQFEKKLLLSGRKSIQYRDHEFIDLTSNSSLHAKPRKEELIAPCSTKKRKVLISESDQMQCVKKISEI*********SSFIPITNK**********SGSRIIAQGSAPSKVDGTTYRIEAEI******************ETKGSAFLIQVQEKLSATEYKEFVGFMKAMKSKAMKISHVLQSIAKLFAGPERLPLLRRFKDYVPAKYHPLYEQYLMNNS

MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGS**************************SKLPTILYTSRTHSQLRQVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRVADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVREADANAADVLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKE*KLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFFREERIC*********************************************************************************************************DHE**D*T***************APCSTKKRKVLISES**************************************SDS**********************************************GSAFLIQVQEKLSATEYKEFVGFMKAMKSKAMKISHVLQSIAKLFAGPERLPLLRRFKDYVPAKYHPLYEQYLMNNS

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1036	2.2.26 [Sep-21-2011]
A4K436		1216	Regulator of telomere elo	yes	no	0.679	0.578	0.411	1e-167
P0C928		1177	Regulator of telomere elo	yes	no	0.681	0.599	0.393	1e-161
Q9NZ71		1219	Regulator of telomere elo	yes	no	0.681	0.579	0.399	1e-160
Q5RE34		1302	Regulator of telomere elo	yes	no	0.681	0.542	0.400	1e-159
Q5RJZ1		1274	Regulator of telomere elo	yes	no	0.678	0.551	0.403	1e-158
Q0VGM9		1203	Regulator of telomere elo	yes	no	0.675	0.581	0.403	1e-158
Q6H1L8		1203	Regulator of telomere elo	N/A	no	0.675	0.581	0.399	1e-155
Q16X92		1010	Regulator of telomere elo	N/A	no	0.689	0.706	0.395	1e-154
B0W9F4		978	Regulator of telomere elo	N/A	no	0.830	0.879	0.352	1e-153
Q7QEI1		991	Regulator of telomere elo	yes	no	0.673	0.704	0.394	1e-152

>sp\|A4K436\|RTEL1_BOVIN Regulator of telomere elongation helicase 1 OS=Bos taurus GN=RTEL1 PE=2 SV=1	Back alignment and function desciption

 Score =  588 bits (1515), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 316/768 (41%), Positives = 453/768 (58%), Gaps = 64/768 (8%)

Query: 1   MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR 60
           MP   ++G+ V+FPF+ Y CQ  YM KV++ LQ K N +LESPTGTGKTLCLLC+TLAWR
Sbjct: 1   MPKITLKGVTVDFPFQPYKCQEEYMSKVLECLQEKVNGILESPTGTGKTLCLLCSTLAWR 60

Query: 61  KSLGSFSTLGSQVNNQISGS-------QSSVNSSQSGD-----SKLPTILYTSRTHSQLR 108
           + L   +    ++  + SG         S  N+   GD     + +P I+Y SRTHSQL 
Sbjct: 61  EHLRD-AVSARRIAERASGELFPDRTLASWGNAIPEGDVPACYTDIPKIIYASRTHSQLT 119

Query: 109 QVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRV 168
           QVI EL+ ++YRP++ +LGSREQLCIH EV   +    N+    LC++    R  H    
Sbjct: 120 QVISELRNTSYRPRVCVLGSREQLCIHPEV---KKQESNHMQVHLCRRKVASRSCHFYNN 176

Query: 169 ADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKG 228
            +       L    +DIEDLV  G     CPY+++R L++  DI+F PYNYL+D   R+ 
Sbjct: 177 VEEKSLEQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIFMPYNYLLDAKSRRA 236

Query: 229 LGVEWKNSILIFDEAHNLEGICADAASFDLSS-------GLLTACISEAKNCIDISSTRR 281
            G++ K +++IFDEAHN+E +C +AASFDL+         ++   + E       +    
Sbjct: 237 HGIDLKGTVVIFDEAHNVEKMCEEAASFDLTPHDVASELDVIDRVLEERTKVAQQAELHP 296

Query: 282 GQSSDET-----LNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNI 336
             S+D       L P++ A L+ +LL+LE  I  V +     G TKPG YI+EL A+  I
Sbjct: 297 EFSADSARSGLNLEPEDLAKLKMILLRLEGAIDAVELPGDNSGVTKPGSYIFELFAEAQI 356

Query: 337 TQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFR------DKGTA-- 388
           T +T   ++D ++   +L+Q    +    T    ++ + +I++I+F       D G    
Sbjct: 357 TFQTKGCILDSLD---QLIQHLAGRAGLFTNTAGLQKLVDIIQIVFSVDSAEGDPGPMVG 413

Query: 389 -HSAYYRVHVR-----EADANAADVLKGKASR----TLSWWCFNPGIAMQEFSRLEVGSI 438
             S  Y+VH+         A  +DV    A+R     LS+WCF+PG +M+E  R  V ++
Sbjct: 414 LASQSYKVHIHLDAGHRRTAQRSDVWNTTAARKPGKVLSYWCFSPGHSMRELVRQGVRTL 473

Query: 439 ILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSI 498
           ILTSGTL+PM SF+ E+++ FP+ +ENPHVI   QIW G++P GP G  L+S++  R S 
Sbjct: 474 ILTSGTLAPMASFSLEMQIPFPVCLENPHVINQHQIWVGVIPKGPDGAQLSSAFDRRFSD 533

Query: 499 EYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPV 558
           E    LG  + NI+R+VP GLL+FFPSY +M++ +  W+          + R  + +KP+
Sbjct: 534 ECLSSLGKVLSNISRVVPHGLLVFFPSYPVMEKSLEFWRARD-------FTRKLEVRKPL 586

Query: 559 -VEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPF 617
            VEPR    F   +E + A++    +SGA+F AVCRGK SEGLDFAD  GR V++TG+P+
Sbjct: 587 FVEPRSKGGFSEVMEAFYARVAAPESSGAIFLAVCRGKASEGLDFADVNGRGVIVTGLPY 646

Query: 618 ATMTDPKVRLKREYLD-LQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHR 676
               DP+V LK ++LD ++AQS  G        FLSG DWY QQASRAVNQA+GRVIRHR
Sbjct: 647 PPRMDPRVLLKMQFLDEMKAQSGAGG------QFLSGHDWYRQQASRAVNQAIGRVIRHR 700

Query: 677 HDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFFR 724
           HDYGA+  CD RFAH   ++Q+  W++PH++ Y  FG V+  + +FFR
Sbjct: 701 HDYGAVFLCDHRFAHADTRAQLPSWVRPHVKVYDSFGHVIRDVAQFFR 748

ATP-dependent DNA helicase required to suppress inappropriate homologous recombination, thereby playing a central role DNA repair and in the maintenance of genomic stability. Antagonizes homologous recombination by promoting the disassembly of D loop recombination intermediates. Also required to regulate telomere length; probably due to its anti-recombinase function.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2

>sp\|P0C928\|RTEL1_DANRE Regulator of telomere elongation helicase 1 OS=Danio rerio GN=rtel1 PE=3 SV=1	Back alignment and function description

>sp\|Q9NZ71\|RTEL1_HUMAN Regulator of telomere elongation helicase 1 OS=Homo sapiens GN=RTEL1 PE=1 SV=2	Back alignment and function description

>sp\|Q5RE34\|RTEL1_PONAB Regulator of telomere elongation helicase 1 OS=Pongo abelii GN=RTEL1 PE=2 SV=1	Back alignment and function description

>sp\|Q5RJZ1\|RTEL1_RAT Regulator of telomere elongation helicase 1 OS=Rattus norvegicus GN=Rtel1 PE=2 SV=2	Back alignment and function description

>sp\|Q0VGM9\|RTEL1_MOUSE Regulator of telomere elongation helicase 1 OS=Mus musculus GN=Rtel1 PE=2 SV=2	Back alignment and function description

>sp\|Q6H1L8\|RTEL1_MUSSP Regulator of telomere elongation helicase 1 OS=Mus spretus GN=Rtel1 PE=2 SV=1	Back alignment and function description

>sp\|Q16X92\|RTEL1_AEDAE Regulator of telomere elongation helicase 1 homolog OS=Aedes aegypti GN=AAEL008960 PE=3 SV=1	Back alignment and function description

>sp\|B0W9F4\|RTEL1_CULQU Regulator of telomere elongation helicase 1 homolog OS=Culex quinquefasciatus GN=CPIJ003765 PE=3 SV=1	Back alignment and function description

>sp\|Q7QEI1\|RTEL1_ANOGA Regulator of telomere elongation helicase 1 homolog OS=Anopheles gambiae GN=AGAP000634 PE=3 SV=5	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1036
255574578		1049	regulator of telomere elongation helicas	0.965	0.953	0.666	0.0
359482607		1084	PREDICTED: regulator of telomere elongat	0.994	0.950	0.668	0.0
449448190		1054	PREDICTED: regulator of telomere elongat	0.984	0.967	0.621	0.0
356547406		1001	PREDICTED: regulator of telomere elongat	0.959	0.993	0.623	0.0
357455003		1089	Regulator of telomere elongation helicas	0.954	0.908	0.592	0.0
357454989		1048	Regulator of telomere elongation helicas	0.954	0.943	0.592	0.0
224054204		749	predicted protein [Populus trichocarpa]	0.714	0.987	0.776	0.0
42563365		1040	regulator of telomere elongation helicas	0.934	0.930	0.542	0.0
297743289		777	unnamed protein product [Vitis vinifera]	0.684	0.912	0.687	0.0
297842871		1016	hypothetical protein ARALYDRAFT_477264 [	0.928	0.946	0.541	0.0

>gi\|255574578\|ref\|XP_002528200.1\| regulator of telomere elongation helicase 1 rtel1, putative [Ricinus communis] gi\|223532412\|gb\|EEF34207.1\| regulator of telomere elongation helicase 1 rtel1, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1408 bits (3644), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 692/1038 (66%), Positives = 815/1038 (78%), Gaps = 38/1038 (3%)

Query: 1    MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR 60
            MPTYKIRGIDV+FP+EAYDCQLVYMEKVIQSLQ++CNALLESPTGTGKTLCLLCATLAWR
Sbjct: 1    MPTYKIRGIDVDFPYEAYDCQLVYMEKVIQSLQSRCNALLESPTGTGKTLCLLCATLAWR 60

Query: 61   KSLGSFSTLGSQVNNQISGSQSS-VNSSQSGDSKLPTILYTSRTHSQLRQVIQELKTSNY 119
            KSLG F+T   + N + +GS+S     S S  + LPTI+YTSRTHSQLRQV+QELK S+Y
Sbjct: 61   KSLGPFTTGKIERNGRTAGSKSDDTPPSPSEGTALPTIVYTSRTHSQLRQVVQELKRSSY 120

Query: 120  RPKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRVADYMKNNPHLG 179
            RPKMVILGSREQLCIH EVSLLRG AQ NAC ++CK+   R+C H +RV+DY++ NPHLG
Sbjct: 121  RPKMVILGSREQLCIHDEVSLLRGKAQTNACHYVCKRREKRQCTHFARVSDYVRKNPHLG 180

Query: 180  DEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILI 239
            DEP+DIEDLV +GR FGPCPY+++REL K VDI+FAPYNYLID  +RK L ++W  SILI
Sbjct: 181  DEPVDIEDLVKMGRRFGPCPYYVSRELHKVVDILFAPYNYLIDRSYRKSLKIDWDKSILI 240

Query: 240  FDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRA 299
            FDEAHNLE +CADAASFDLSSGLLTACISEAK+CI++S  RR  S+D++ NPDNFAIL+A
Sbjct: 241  FDEAHNLESLCADAASFDLSSGLLTACISEAKSCIELSVARREDSNDKSRNPDNFAILKA 300

Query: 300  LLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYKLIDIVEVAAELLQEDK 359
            +LLKLEKRIAEVPI SK+LGFT+PGPYIYELLADL+IT ETA KL DI+E AA LL+EDK
Sbjct: 301  ILLKLEKRIAEVPIESKDLGFTRPGPYIYELLADLHITHETATKLTDIIEEAALLLEEDK 360

Query: 360  LQNKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVREADANAADVLKGKASRTLSWW 419
             QN    T CR+ES+ +I KIIFR+K  AH+ +YRVHV+E +A+A+D L+GKASRTLSWW
Sbjct: 361  -QNTAKGTVCRLESMGDIFKIIFREKSNAHANFYRVHVQEVEASASDSLRGKASRTLSWW 419

Query: 420  CFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIV 479
            CFNPG+AM+EFSR+ V SIILTSGTLSPMDSFAQELKL+FP+R+ENPHVI+SKQIWAG+V
Sbjct: 420  CFNPGVAMEEFSRMGVCSIILTSGTLSPMDSFAQELKLDFPIRLENPHVISSKQIWAGVV 479

Query: 480  PVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNT 539
            PVGPSG   NSSYRNRDS+EYKQELGN IVN ARIVPDGLL+FFPSYYL+DQCI CWKN 
Sbjct: 480  PVGPSGRSFNSSYRNRDSLEYKQELGNAIVNFARIVPDGLLVFFPSYYLLDQCIGCWKNV 539

Query: 540  SHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEG 599
            +H + TTIWERICKHK+PVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEG
Sbjct: 540  THASSTTIWERICKHKQPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEG 599

Query: 600  LDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQ 659
            LDFADH GRAV+I GMPF +  DPKVRLKRE+LD Q   Q   YK      L+GE WY Q
Sbjct: 600  LDFADHTGRAVMIIGMPFPSRNDPKVRLKREFLDEQLCLQRDAYKS---QLLTGESWYTQ 656

Query: 660  QASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTL 719
            QASRAVNQAVGRVIRHRHDYGAIIFCDERFAH + +SQISLWIQPHI+C+SKFGDVV+TL
Sbjct: 657  QASRAVNQAVGRVIRHRHDYGAIIFCDERFAHSNSQSQISLWIQPHIKCHSKFGDVVFTL 716

Query: 720  TRFFREERICGSTNLKLIKTEVSGDVRELKPVDLLDKISLEEVPSSTPAVDQA-----CY 774
            +RFFR+    G T LK IK E   +VRE+K    +DK  L+   S+    DQ+       
Sbjct: 717  SRFFRD----GPTKLKTIKIEDMENVREMKTTQPIDKFYLDGFLSTPTPQDQSPGVKLSS 772

Query: 775  SLHEVKNRNTSSHSGEIVPANRSSLSPYKGIWASELKNSSDLIQFEKKLLLSGRKSIQYR 834
            SL +V+    S    E++PANRSSL+ +K     + K SS LI  EK LL+SGRK IQ  
Sbjct: 773  SLLKVRGGKESKQLQEVLPANRSSLTTFKENHDFKPKFSSGLIHKEKILLISGRKDIQCE 832

Query: 835  DHEFIDLTSNSSLHAKPRKEELIAPCSTKKRKVLISESDQMQCVKKISEIASDAESSQPS 894
            +HE IDLT  S L   P +E L+ P S KKR+ L S+ D M       +IA+  E +  S
Sbjct: 833  NHEIIDLTEKSILDEMPSRENLLVPYSAKKRRGLNSKHDIM------GQIANSQEHASSS 886

Query: 895  SFIPITNKVKHEKPQISDSGSRIIAQGSAPSKVDGTTYRIEAEIQSEKSKGSHSSAPPCG 954
                     K +  Q+           + PS   G T +++ E+ ++KSKG  ++  PC 
Sbjct: 887  ---------KRQNAQVV---------SALPSNDRGITRKVDTELLTQKSKGVQTTLVPCS 928

Query: 955  GEETKGSAFLIQVQEKLSATEYKEFVGFMKAMKSKAMKISHVLQSIAKLFAGPERLPLLR 1014
             EE +GSAFLIQV+EKL+A EYKEFVGFMKA+KSKAM+I  VL+SI KLF+GP+R PLL+
Sbjct: 929  DEEKRGSAFLIQVKEKLTAAEYKEFVGFMKALKSKAMQIGSVLESIVKLFSGPDRFPLLK 988

Query: 1015 RFKDYVPAKYHPLYEQYL 1032
            RFKDY+PAKYH LYE YL
Sbjct: 989  RFKDYIPAKYHSLYEHYL 1006

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359482607\|ref\|XP_002279773.2\| PREDICTED: regulator of telomere elongation helicase 1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449448190\|ref\|XP_004141849.1\| PREDICTED: regulator of telomere elongation helicase 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356547406\|ref\|XP_003542103.1\| PREDICTED: regulator of telomere elongation helicase 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|357455003\|ref\|XP_003597782.1\| Regulator of telomere elongation helicase [Medicago truncatula] gi\|355486830\|gb\|AES68033.1\| Regulator of telomere elongation helicase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357454989\|ref\|XP_003597775.1\| Regulator of telomere elongation helicase [Medicago truncatula] gi\|355486823\|gb\|AES68026.1\| Regulator of telomere elongation helicase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|224054204\|ref\|XP_002298143.1\| predicted protein [Populus trichocarpa] gi\|222845401\|gb\|EEE82948.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|42563365\|ref\|NP_178113.3\| regulator of telomere elongation helicase 1 [Arabidopsis thaliana] gi\|332198212\|gb\|AEE36333.1\| regulator of telomere elongation helicase 1 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297743289\|emb\|CBI36156.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297842871\|ref\|XP_002889317.1\| hypothetical protein ARALYDRAFT_477264 [Arabidopsis lyrata subsp. lyrata] gi\|297335158\|gb\|EFH65576.1\| hypothetical protein ARALYDRAFT_477264 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1036
TAIR\|locus:2016209		1040	AT1G79950 [Arabidopsis thalian	0.756	0.753	0.613	4e-285
UNIPROTKB\|Q16X92		1010	AAEL008960 "Regulator of telom	0.315	0.323	0.451	4.9e-144
UNIPROTKB\|E1BTS7		1085	Gga.49055 "Uncharacterized pro	0.311	0.297	0.457	2.1e-141
UNIPROTKB\|B0W9F4		978	CPIJ003765 "Regulator of telom	0.393	0.417	0.391	3.5e-141
ZFIN\|ZDB-GENE-050306-11		1177	rtel1 "regulator of telomere e	0.426	0.375	0.388	5.1e-141
UNIPROTKB\|E1BTS6		1124	Gga.49055 "Uncharacterized pro	0.311	0.287	0.457	6.1e-141
UNIPROTKB\|F1NE49		1127	Gga.49055 "Uncharacterized pro	0.311	0.286	0.457	6.8e-141
UNIPROTKB\|Q7QEI1		991	AGAP000634 "Regulator of telom	0.287	0.300	0.460	1.9e-137
UNIPROTKB\|B3NSW1		985	GG18780 "Regulator of telomere	0.284	0.299	0.468	2.8e-137
UNIPROTKB\|B4PZB4		985	GE16425 "Regulator of telomere	0.285	0.300	0.467	1.9e-136

TAIR\|locus:2016209 AT1G79950 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2569 (909.4 bits), Expect = 4.0e-285, Sum P(2) = 4.0e-285
 Identities = 492/802 (61%), Positives = 616/802 (76%)

Query:     1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWR 60
             MP Y IRGI+VEFPFEAY  Q++YM++VI+SLQNKC+ALLESPTGTGKTLCLLCATLAWR
Sbjct:    46 MPNYSIRGINVEFPFEAYQSQIIYMDRVIESLQNKCHALLESPTGTGKTLCLLCATLAWR 105

Query:    61 KSLGSFSTLXXXXXXX---XXXXXXXXXXXXXXXXKLPTILYTSRTHSQLRQVIQELKTS 117
             KSLGSFST                             PTI+Y SRTHSQLRQVI+ELK S
Sbjct:   106 KSLGSFSTRKDRKNSAIPWSDSDEPLSQSGGGGGGAFPTIVYASRTHSQLRQVIKELKRS 165

Query:   118 NYRPKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRVADYMKNNPH 177
             +YRPKMV+LGSREQLC++ EV+ LRG A  NAC++LCKK   R+CNH +R+ DY+K+NPH
Sbjct:   166 SYRPKMVVLGSREQLCVNEEVNSLRGKALTNACQYLCKKRGKRQCNHFNRLPDYLKHNPH 225

Query:   178 LGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSI 237
             +GDEP+DIEDLVNIG+  GPCPY++TREL K VDI+FAPYNYLI   +RK L V W NS+
Sbjct:   226 IGDEPVDIEDLVNIGKDSGPCPYYITRELHKDVDIIFAPYNYLISNGYRKFLKVNWTNSV 285

Query:   238 LIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAIL 297
             LIFDEAHNLE +CAD+ASFDL S LL+ACISEA+ C+ +++ RR   +D ++NP+NFAIL
Sbjct:   286 LIFDEAHNLESLCADSASFDLPSVLLSACISEAQECVQLAAARRDSLNDVSINPENFAIL 345

Query:   298 RALLLKLEKRIAEVPINSKELGFTKPGPYIYELLADLNITQETAYKLIDIVEVAAELLQE 357
             + LLLKL++ I++VPI  ++ GFTKPGPYIYE+L  LNIT ETA KLI  VE AA  L+E
Sbjct:   346 KGLLLKLQELISKVPIPKRDEGFTKPGPYIYEMLKSLNITHETAPKLIGTVEEAAVFLEE 405

Query:   358 DKLQNKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVREADANAADVLKGKASRTLS 417
             +K Q   +    ++E I+++LK+IFR+ G+ H+  YRVHV+E + N+ DV+KGK SRTLS
Sbjct:   406 EK-QRTATNAGSKLEIIADMLKLIFRENGSNHADVYRVHVQELEQNSTDVMKGKVSRTLS 464

Query:   418 WWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAG 477
             WWCF+PGI M + ++  VGSIILTSGTLSPMDS AQELKL+FP+R+ENPHVI+S Q+WAG
Sbjct:   465 WWCFSPGITMLDIAQKGVGSIILTSGTLSPMDSLAQELKLDFPIRLENPHVISSNQLWAG 524

Query:   478 IVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWK 537
             +V  GPSGY+LNSSYRNRD  EYKQELGN IVN +R+VP+GLLIFFPSYYLMD CI  WK
Sbjct:   525 VVSTGPSGYVLNSSYRNRDVPEYKQELGNAIVNFSRVVPEGLLIFFPSYYLMDSCITFWK 584

Query:   538 NTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVS 597
             N  + N  T+WERICK KKPV+EP+ SSLFP A+ D+  KL+D +TSG VFFAVCRGKVS
Sbjct:   585 NGCYRNSMTVWERICKLKKPVIEPKDSSLFPAAMRDFSEKLQDRATSGVVFFAVCRGKVS 644

Query:   598 EGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWY 657
             EGLDFAD AGRAVVITG+P+A +TDP+V+LKRE+LD   QSQ  + K  + + LSG  WY
Sbjct:   645 EGLDFADGAGRAVVITGLPYARVTDPRVKLKREFLD--EQSQLADVKLPRSTLLSGSMWY 702

Query:   658 NQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVY 717
             +Q+A+RAVNQA+GRVIRHRHDYGAIIFCD+RF  PS++S+ISLWI+P+++CYS++G+V+ 
Sbjct:   703 SQEAARAVNQAIGRVIRHRHDYGAIIFCDDRFEQPSQQSKISLWIRPNVKCYSRYGEVIS 762

Query:   718 TLTRFFREERICGSTNLKLIKTEVSGDVRELKPVDLLDKISLEEVPSSTPAVDQACYSLH 777
              L RFFR ER   +   +L+  + +  V  L PV+     S+E+ P  TPA   +  +L 
Sbjct:   763 DLARFFRTER--SNFPARLVTEQENNIVSTLLPVE-----SIEDNP--TPAFGNS--NLK 811

Query:   778 EVK-NRNTSSHSGEIVPANRSS 798
              V   +N  S      PANR+S
Sbjct:   812 NVGVAQNELSRLEAFPPANRAS 833

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0016817 "hydrolase activity, acting on acid anhydrides" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

UNIPROTKB\|Q16X92 AAEL008960 "Regulator of telomere elongation helicase 1 homolog" [Aedes aegypti (taxid:7159)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BTS7 Gga.49055 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|B0W9F4 CPIJ003765 "Regulator of telomere elongation helicase 1 homolog" [Culex quinquefasciatus (taxid:7176)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-050306-11 rtel1 "regulator of telomere elongation helicase 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BTS6 Gga.49055 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NE49 Gga.49055 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q7QEI1 AGAP000634 "Regulator of telomere elongation helicase 1 homolog" [Anopheles gambiae (taxid:7165)]	Back alignment and assigned GO terms

UNIPROTKB\|B3NSW1 GG18780 "Regulator of telomere elongation helicase 1 homolog" [Drosophila erecta (taxid:7220)]	Back alignment and assigned GO terms

UNIPROTKB\|B4PZB4 GE16425 "Regulator of telomere elongation helicase 1 homolog" [Drosophila yakuba (taxid:7245)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4.12	0.824
3rd Layer	3.6.4	0.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.I.9664.1	hypothetical protein (731 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1036
TIGR00604		705	TIGR00604, rad3, DNA repair helicase (rad3)	1e-114
COG1199		654	COG1199, DinG, Rad3-related DNA helicases [Transcr	1e-74
pfam06733		168	pfam06733, DEAD_2, DEAD_2	6e-58
smart00488		289	smart00488, DEXDc2, DEAD-like helicases superfamil	1e-54
pfam13307		165	pfam13307, Helicase_C_2, Helicase C-terminal domai	3e-49
smart00491		142	smart00491, HELICc2, helicase superfamily c-termin	2e-40
TIGR01407		850	TIGR01407, dinG_rel, DnaQ family exonuclease/DinG	4e-11
PRK11747		697	PRK11747, dinG, ATP-dependent DNA helicase DinG; P	8e-05
PRK08074		928	PRK08074, PRK08074, bifunctional ATP-dependent DNA	5e-04
PRK08074		928	PRK08074, PRK08074, bifunctional ATP-dependent DNA	0.002

>gnl\|CDD\|233047 TIGR00604, rad3, DNA repair helicase (rad3)	Back alignment and domain information

 Score =  369 bits (948), Expect = e-114
 Identities = 224/758 (29%), Positives = 341/758 (44%), Gaps = 111/758 (14%)

Query: 11  VEFPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTL 69
           V FP+E  Y  Q  YM  + +SL     A+LE P+GTGKT+ LL   LA+          
Sbjct: 4   VYFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAY---------- 53

Query: 70  GSQVNNQISGSQSSVNSSQSGDSKLPTILYTSRTHSQLRQVIQEL-KTSNYRPK------ 122
                             Q    ++  I+Y SRTHSQL Q  +EL K  +YR        
Sbjct: 54  ------------------QQEKPEVRKIIYASRTHSQLEQATEELRKLMSYRTPRIGEES 95

Query: 123 ---MVILGSREQLCIHREVSLLR-GSAQNNACRFL--CKKGTNRRCNHHSRVADYMKNNP 176
               + L SR+ LC+H EVS  R G   N  C  L   K    R    +    ++ +N  
Sbjct: 96  PVSGLSLASRKNLCLHPEVSKERQGKVVNGKCIKLTVSKIKEQRTEKPNVESCEFYENFD 155

Query: 177 HLGD-------EPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGL 229
            L +       E +DIEDLV  G   G CPYF TR++    +IV  PY YL+DP  R  +
Sbjct: 156 ELREVEDLLLSEIMDIEDLVEYGELLGLCPYFATRKMLPFANIVLLPYQYLLDPKIRSAV 215

Query: 230 GVEWKNSILIFDEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETL 289
            +E K+SI+IFDEAHNL+ +C  + S +LS   L  C  E             +  +E  
Sbjct: 216 SIELKDSIVIFDEAHNLDNVCISSLSSNLSVRSLKRCSKEIAEY--------FEKIEERK 267

Query: 290 NPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGPYIYELLAD-----LNITQ------ 338
             D    L   L KL + + +  + + E  F        E+L +     + I +      
Sbjct: 268 EVDA-RKLLDELQKLVEGLKQEDLLTDEDIFLANPVLPKEVLPEAVPGNIRIAEIFLHKL 326

Query: 339 -------ETAYK-LIDIVEVAAELLQ----EDKLQNKKSTTACRIESISNILKIIFRDKG 386
                  + A K L  + E+    L+    +  +       + R+ ++   L+I   +  
Sbjct: 327 SRYLEYLKDALKVLGVVSELPDAFLEHLKEKTFIDRPLRFCSERLSNLLRELEITHPEDF 386

Query: 387 TAHSAYYRVH-VREADANAADVL------KGKASRTLSWWCFNPGIAMQE-FSRLEVGSI 438
           +A    +    +     N           K   +  L + C +P IA++  F R  V S+
Sbjct: 387 SALVLLFTFATLVLTYTNGFLEGIEPYENKTVPNPILKFMCLDPSIALKPLFER--VRSV 444

Query: 439 ILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSI 498
           IL SGTLSP+D+F + L  N   +    H++  + +   IV  G     L+S++  R+  
Sbjct: 445 ILASGTLSPLDAFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDP 504

Query: 499 EYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPV 558
              + LG  +V  ++I+PDG+++FFPSY  ++  ++ WK         I E I K K   
Sbjct: 505 SLVRNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMG------ILENIEKKKLIF 558

Query: 559 VEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFA 618
           VE + +     A+E Y   +      GAV  +V  GKVSEG+DF D  GRAV++ G+P+ 
Sbjct: 559 VETKDAQETSDALERYKQAVS--EGRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYE 616

Query: 619 TMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHD 678
                 +  + E+L  Q   +              +D+Y   A RAVNQA+GRVIRH+ D
Sbjct: 617 YTESRILLARLEFLRDQYPIRE------------NQDFYEFDAMRAVNQAIGRVIRHKDD 664

Query: 679 YGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVV 716
           YG+I+  D+R+A  +++ ++  WIQ  IQ     G  +
Sbjct: 665 YGSIVLLDKRYARSNKRKKLPKWIQDTIQSSDLNGMAI 702

All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 705

>gnl\|CDD\|224120 COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|219153 pfam06733, DEAD_2, DEAD_2	Back alignment and domain information

>gnl\|CDD\|214693 smart00488, DEXDc2, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|222037 pfam13307, Helicase_C_2, Helicase C-terminal domain	Back alignment and domain information

>gnl\|CDD\|214694 smart00491, HELICc2, helicase superfamily c-terminal domain	Back alignment and domain information

>gnl\|CDD\|233398 TIGR01407, dinG_rel, DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>gnl\|CDD\|236966 PRK11747, dinG, ATP-dependent DNA helicase DinG; Provisional	Back alignment and domain information

>gnl\|CDD\|236148 PRK08074, PRK08074, bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>gnl\|CDD\|236148 PRK08074, PRK08074, bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1036
KOG1132		945	consensus Helicase of the DEAD superfamily [Replic	100.0
TIGR00604		705	rad3 DNA repair helicase (rad3). All proteins in t	100.0
KOG1133		821	consensus Helicase of the DEAD superfamily [Replic	100.0
KOG1131		755	consensus RNA polymerase II transcription initiati	100.0
PRK11747		697	dinG ATP-dependent DNA helicase DinG; Provisional	100.0
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	100.0
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	100.0
COG1199		654	DinG Rad3-related DNA helicases [Transcription / D	100.0
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	100.0
TIGR03117		636	cas_csf4 CRISPR-associated DEAD/DEAH-box helicase	100.0
smart00489		289	DEXDc3 DEAD-like helicases superfamily.	100.0
smart00488		289	DEXDc2 DEAD-like helicases superfamily.	100.0
PF13307		167	Helicase_C_2: Helicase C-terminal domain; PDB: 4A1	100.0
smart00491		142	HELICc2 helicase superfamily c-terminal domain.	99.98
PF06733		174	DEAD_2: DEAD_2; InterPro: IPR010614 This represent	99.97
smart00492		141	HELICc3 helicase superfamily c-terminal domain.	99.97
PRK11192		434	ATP-dependent RNA helicase SrmB; Provisional	99.56
PTZ00110		545	helicase; Provisional	99.53
PRK04537		572	ATP-dependent RNA helicase RhlB; Provisional	99.52
TIGR00614		470	recQ_fam ATP-dependent DNA helicase, RecQ family.	99.51
PRK01297		475	ATP-dependent RNA helicase RhlB; Provisional	99.51
PRK11776		460	ATP-dependent RNA helicase DbpA; Provisional	99.51
PRK10590		456	ATP-dependent RNA helicase RhlE; Provisional	99.49
PLN00206		518	DEAD-box ATP-dependent RNA helicase; Provisional	99.48
PRK04837		423	ATP-dependent RNA helicase RhlB; Provisional	99.47
PTZ00424		401	helicase 45; Provisional	99.45
TIGR01389		591	recQ ATP-dependent DNA helicase RecQ. The ATP-depe	99.43
PRK11634		629	ATP-dependent RNA helicase DeaD; Provisional	99.42
PRK11057		607	ATP-dependent DNA helicase RecQ; Provisional	99.42
PRK13767		876	ATP-dependent helicase; Provisional	99.41
TIGR03817		742	DECH_helic helicase/secretion neighborhood putativ	99.39
PRK01172		674	ski2-like helicase; Provisional	99.3
PRK02362		737	ski2-like helicase; Provisional	99.29
TIGR00580		926	mfd transcription-repair coupling factor (mfd). Al	99.27
PLN03137		1195	ATP-dependent DNA helicase; Q4-like; Provisional	99.22
PRK09401		1176	reverse gyrase; Reviewed	99.2
PRK00254		720	ski2-like helicase; Provisional	99.14
TIGR01587		358	cas3_core CRISPR-associated helicase Cas3. This mo	99.13
PHA02558		501	uvsW UvsW helicase; Provisional	99.1
TIGR02621		844	cas3_GSU0051 CRISPR-associated helicase Cas3, Anae	99.08
PF04851		184	ResIII: Type III restriction enzyme, res subunit;	99.05
PRK14701		1638	reverse gyrase; Provisional	99.04
TIGR01054		1171	rgy reverse gyrase. Generally, these gyrases are e	98.99
PF00270		169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	98.99
PRK10689		1147	transcription-repair coupling factor; Provisional	98.93
cd00268		203	DEADc DEAD-box helicases. A diverse family of prot	98.92
PHA02653		675	RNA helicase NPH-II; Provisional	98.91
PRK09751		1490	putative ATP-dependent helicase Lhr; Provisional	98.89
TIGR01970		819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	98.88
TIGR03714		762	secA2 accessory Sec system translocase SecA2. Memb	98.81
PRK12898		656	secA preprotein translocase subunit SecA; Reviewed	98.8
smart00487		201	DEXDc DEAD-like helicases superfamily.	98.78
KOG0345		567	consensus ATP-dependent RNA helicase [RNA processi	98.73
TIGR00963		745	secA preprotein translocase, SecA subunit. The pro	98.69
PRK11664		812	ATP-dependent RNA helicase HrpB; Provisional	98.68
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	98.68
PRK09200		790	preprotein translocase subunit SecA; Reviewed	98.63
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	98.6
PRK09694		878	helicase Cas3; Provisional	98.46
cd00046		144	DEXDc DEAD-like helicases superfamily. A diverse f	98.44
PRK04914		956	ATP-dependent helicase HepA; Validated	98.24
PRK13104		896	secA preprotein translocase subunit SecA; Reviewed	98.19
COG1110		1187	Reverse gyrase [DNA replication, recombination, an	98.16
TIGR00348		667	hsdR type I site-specific deoxyribonuclease, HsdR	98.07
PRK13766		773	Hef nuclease; Provisional	98.04
COG1204		766	Superfamily II helicase [General function predicti	98.01
KOG0350		620	consensus DEAD-box ATP-dependent RNA helicase [RNA	97.96
COG1205		851	Distinct helicase family with a unique C-terminal	97.94
KOG0354		746	consensus DEAD-box like helicase [General function	97.93
cd00079		131	HELICc Helicase superfamily c-terminal domain; ass	97.93
PRK12904		830	preprotein translocase subunit SecA; Reviewed	97.87
COG1061		442	SSL2 DNA or RNA helicases of superfamily II [Trans	97.85
PF13086		236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	97.84
COG0556		663	UvrB Helicase subunit of the DNA excision repair c	97.79
KOG0331		519	consensus ATP-dependent RNA helicase [RNA processi	97.73
PF02562		205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	97.66
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	97.56
KOG0335		482	consensus ATP-dependent RNA helicase [RNA processi	97.44
PRK11448		1123	hsdR type I restriction enzyme EcoKI subunit R; Pr	97.3
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	97.29
PRK10536		262	hypothetical protein; Provisional	97.25
KOG0348		708	consensus ATP-dependent RNA helicase [RNA processi	97.24
COG4889		1518	Predicted helicase [General function prediction on	97.2
COG1111		542	MPH1 ERCC4-like helicases [DNA replication, recomb	97.18
PRK05580		679	primosome assembly protein PriA; Validated	97.04
TIGR00376		637	DNA helicase, putative. The gene product may repre	97.0
COG1201		814	Lhr Lhr-like helicases [General function predictio	96.98
PF00176		299	SNF2_N: SNF2 family N-terminal domain; InterPro: I	96.85
COG4581		1041	Superfamily II RNA helicase [DNA replication, reco	96.85
PF13245		76	AAA_19: Part of AAA domain	96.83
TIGR01967		1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	96.83
KOG0342		543	consensus ATP-dependent RNA helicase pitchoune [RN	96.77
KOG0344		593	consensus ATP-dependent RNA helicase [RNA processi	96.73
KOG1803		649	consensus DNA helicase [Replication, recombination	96.71
PRK12899		970	secA preprotein translocase subunit SecA; Reviewed	96.61
TIGR03158		357	cas3_cyano CRISPR-associated helicase, Cyano-type.	96.54
KOG0339		731	consensus ATP-dependent RNA helicase [RNA processi	96.31
PLN03142		1033	Probable chromatin-remodeling complex ATPase chain	96.28
PRK11131		1294	ATP-dependent RNA helicase HrpA; Provisional	96.25
KOG1802		935	consensus RNA helicase nonsense mRNA reducing fact	96.14
TIGR00603		732	rad25 DNA repair helicase rad25. All proteins in t	96.13
PRK11448		1123	hsdR type I restriction enzyme EcoKI subunit R; Pr	96.05
KOG4204		231	consensus Histone deacetylase complex, SIN3 compon	96.05
COG1203		733	CRISPR-associated helicase Cas3 [Defense mechanism	95.94
KOG0330		476	consensus ATP-dependent RNA helicase [RNA processi	95.9
COG4096		875	HsdR Type I site-specific restriction-modification	95.87
KOG0346		569	consensus RNA helicase [RNA processing and modific	95.86
PF00271		78	Helicase_C: Helicase conserved C-terminal domain;	95.78
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	95.72
TIGR03158		357	cas3_cyano CRISPR-associated helicase, Cyano-type.	95.7
COG5602		1163	SIN3 Histone deacetylase complex, SIN3 component [	95.55
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	95.43
COG0514		590	RecQ Superfamily II DNA helicase [DNA replication,	95.27
KOG1805		1100	consensus DNA replication helicase [Replication, r	95.22
COG1200		677	RecG RecG-like helicase [DNA replication, recombin	95.16
PF02671		47	PAH: Paired amphipathic helix repeat; InterPro: IP	95.0
COG1202		830	Superfamily II helicase, archaea-specific [General	94.97
smart00490		82	HELICc helicase superfamily c-terminal domain.	94.96
COG1202		830	Superfamily II helicase, archaea-specific [General	94.93
PRK13103		913	secA preprotein translocase subunit SecA; Reviewed	94.73
KOG0343		758	consensus RNA Helicase [RNA processing and modific	94.68
KOG0334		997	consensus RNA helicase [RNA processing and modific	94.61
KOG0333		673	consensus U5 snRNP-like RNA helicase subunit [RNA	94.33
PF13604		196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	94.3
TIGR00595		505	priA primosomal protein N'. All proteins in this f	94.28
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	94.2
COG1061		442	SSL2 DNA or RNA helicases of superfamily II [Trans	94.05
TIGR00603		732	rad25 DNA repair helicase rad25. All proteins in t	93.64
TIGR02640		262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	93.62
PRK05298		652	excinuclease ABC subunit B; Provisional	93.49
KOG0389		941	consensus SNF2 family DNA-dependent ATPase [Chroma	93.25
KOG0385		971	consensus Chromatin remodeling complex WSTF-ISWI,	93.21
COG0610		962	Type I site-specific restriction-modification syst	92.81
PHA02244		383	ATPase-like protein	92.8
PRK15483		986	type III restriction-modification system StyLTI en	92.76
PRK13107		908	preprotein translocase subunit SecA; Reviewed	92.64
PF00580		315	UvrD-helicase: UvrD/REP helicase N-terminal domain	92.26
COG1197		1139	Mfd Transcription-repair coupling factor (superfam	92.25
PRK13766		773	Hef nuclease; Provisional	92.23
KOG0336		629	consensus ATP-dependent RNA helicase [RNA processi	91.96
PRK12902		939	secA preprotein translocase subunit SecA; Reviewed	91.92
PRK09694		878	helicase Cas3; Provisional	91.75
PRK13531		498	regulatory ATPase RavA; Provisional	91.44
COG0714		329	MoxR-like ATPases [General function prediction onl	91.26
PF01695		178	IstB_IS21: IstB-like ATP binding protein; InterPro	91.22
COG1205		851	Distinct helicase family with a unique C-terminal	90.86
PRK06835		329	DNA replication protein DnaC; Validated	90.68
COG1111		542	MPH1 ERCC4-like helicases [DNA replication, recomb	90.61
PRK08181		269	transposase; Validated	90.51
PRK12900		1025	secA preprotein translocase subunit SecA; Reviewed	89.82
COG1204		766	Superfamily II helicase [General function predicti	89.64
COG4096		875	HsdR Type I site-specific restriction-modification	89.13
TIGR00595		505	priA primosomal protein N'. All proteins in this f	89.06
COG1203		733	CRISPR-associated helicase Cas3 [Defense mechanism	88.82
COG1484		254	DnaC DNA replication protein [DNA replication, rec	88.73
cd00009		151	AAA The AAA+ (ATPases Associated with a wide varie	88.64
KOG0947		1248	consensus Cytoplasmic exosomal RNA helicase SKI2,	88.48
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	88.48
PRK13407		334	bchI magnesium chelatase subunit I; Provisional	87.81
KOG0338		691	consensus ATP-dependent RNA helicase [RNA processi	87.77
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	87.28
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	87.16
PF06745		226	KaiC: KaiC; InterPro: IPR014774 This entry represe	86.92
KOG0351		941	consensus ATP-dependent DNA helicase [Replication,	86.83
PRK12906		796	secA preprotein translocase subunit SecA; Reviewed	86.78
cd07347		78	harmonin_N_like N-terminal protein-binding module	86.28
KOG0341		610	consensus DEAD-box protein abstrakt [RNA processin	86.05
KOG0343		758	consensus RNA Helicase [RNA processing and modific	85.57
cd07354		80	HN_L-delphilin-R1_like First harmonin_N_like domai	85.39
KOG0948		1041	consensus Nuclear exosomal RNA helicase MTR4, DEAD	85.37
KOG0328		400	consensus Predicted ATP-dependent RNA helicase FAL	85.27
PRK12402		337	replication factor C small subunit 2; Reviewed	85.19
KOG0353		695	consensus ATP-dependent DNA helicase [General func	85.16
PRK12903		925	secA preprotein translocase subunit SecA; Reviewed	85.04
PF13872		303	AAA_34: P-loop containing NTP hydrolase pore-1	84.97
PRK12906		796	secA preprotein translocase subunit SecA; Reviewed	84.72
KOG0340		442	consensus ATP-dependent RNA helicase [RNA processi	84.42
COG1474		366	CDC6 Cdc6-related protein, AAA superfamily ATPase	84.4
KOG0352		641	consensus ATP-dependent DNA helicase [Replication,	84.33
PRK12901		1112	secA preprotein translocase subunit SecA; Reviewed	83.98
cd01124		187	KaiC KaiC is a circadian clock protein primarily f	83.91
KOG0342		543	consensus ATP-dependent RNA helicase pitchoune [RN	83.77
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	83.59
PRK12326		764	preprotein translocase subunit SecA; Reviewed	83.54
TIGR01650		327	PD_CobS cobaltochelatase, CobS subunit. This model	83.27
KOG0989		346	consensus Replication factor C, subunit RFC4 [Repl	83.18
COG4098		441	comFA Superfamily II DNA/RNA helicase required for	82.99
smart00382		148	AAA ATPases associated with a variety of cellular	82.68
TIGR00390		441	hslU ATP-dependent protease HslVU, ATPase subunit.	82.55
PRK09183		259	transposase/IS protein; Provisional	82.5
PRK08939		306	primosomal protein DnaI; Reviewed	82.47
COG1198		730	PriA Primosomal protein N' (replication factor Y)	82.23
PRK13894		319	conjugal transfer ATPase TrbB; Provisional	82.12
TIGR02030		337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	82.01
KOG0926		1172	consensus DEAH-box RNA helicase [RNA processing an	81.99
PRK06526		254	transposase; Provisional	81.55
KOG4150		1034	consensus Predicted ATP-dependent RNA helicase [RN	81.06
PRK11131		1294	ATP-dependent RNA helicase HrpA; Provisional	80.96
PF13191		185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	80.88
PRK07952		244	DNA replication protein DnaC; Validated	80.82
PRK08116		268	hypothetical protein; Validated	80.78
PF01078		206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	80.75
PRK05298		652	excinuclease ABC subunit B; Provisional	80.72
KOG0331		519	consensus ATP-dependent RNA helicase [RNA processi	80.44
TIGR02562		1110	cas3_yersinia CRISPR-associated helicase Cas3. The	80.35

>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]	Back alignment and domain information

Probab=100.00  E-value=4.2e-130  Score=1147.10  Aligned_cols=891  Identities=43%  Similarity=0.686  Sum_probs=681.8

Q ss_pred             CCeeeEc-CeeecCCCCCCHHHHHHHHHHHHHHHcCCceEEeccCCCChhHHHHHHHHHHHhhhcCccc-cCc-ccc-cc
Q 001656            1 MPTYKIR-GIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFST-LGS-QVN-NQ   76 (1036)
Q Consensus         1 m~~~~i~-gi~v~FPfepy~~Q~e~m~~V~~aL~~~k~~llEAPTGTGKTLa~L~~aLa~~~~~~~~~~-~~~-~~~-~~   76 (1036)
                      ||.+.|+ |++|+|||+||++|+.||.+|+.+|+.+.++++|+||||||||++||++|+|++..+.... +.. ++. +-
T Consensus         5 ~~~~~i~~Gv~V~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~   84 (945)
T KOG1132|consen    5 MPKIVINIGVPVEFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGF   84 (945)
T ss_pred             CcceEeccCceeeccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccc
Confidence            8899999 9999999999999999999999999999999999999999999999999999998763211 100 111 00


Q ss_pred             --ccCCCCccCCCC--CC----CCCCCeEEEEcCCHHHHHHHHHHHHhcCCCCeEEEeCCcccccccHHHHhhhccc-ch
Q 001656           77 --ISGSQSSVNSSQ--SG----DSKLPTILYTSRTHSQLRQVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGSA-QN  147 (1036)
Q Consensus        77 --~~~~~~~~~~~q--~~----~~~~pkIiy~TRThsQl~Qvv~ELrkl~~~~k~~vLgSR~~lCin~~v~~l~~~~-~~  147 (1036)
                        .+++....+...  ..    ....|+|+|+||||+|+.|+++||++++|+++|+|||||+|+|+|++++++.++. .+
T Consensus        85 ~p~~~s~~~g~~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtVLgSReq~Cinpev~k~~~~~~~~  164 (945)
T KOG1132|consen   85 IPTQPSDSGGEKSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTVLGSREQLCINPEVKKLEGNALQN  164 (945)
T ss_pred             cCCCCccCCCCchhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCCCceEEeecchhhccCHHHhhhhcchhhh
Confidence              000100000000  11    1358999999999999999999999999999999999999999999999888764 46


Q ss_pred             HHhHHHhhccCCCcCcccccHHHHhhhCCCCCCCCCChhhHhhhccCCCCchhHHHHhhhcCccEEEeccccccCHhhhh
Q 001656          148 NACRFLCKKGTNRRCNHHSRVADYMKNNPHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRK  227 (1036)
Q Consensus       148 ~~C~~L~k~~~~~~C~~~~~l~~~~~~~~~~~~~~~dIedlv~~g~~~~~CPY~~aR~~~~~ADIIv~nYnYLld~~ir~  227 (1036)
                      +.|..+++   .+.|.||...... +.++.+..+++||||||+.|+....||||++|++.+.|||||||||||+||.+|+
T Consensus       165 ~~C~k~~~---~~~C~f~~~~~~~-sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~  240 (945)
T KOG1132|consen  165 HVCKKLVK---SRSCHFYKIVEEK-SLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRR  240 (945)
T ss_pred             hHHHhhcc---ccccccccccccc-ccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhc
Confidence            88988876   7889998654432 3355677789999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCcEEEEeCccChHHHHHhhcccccCHHHHH---HHHHHHHhhhhhhccc----cC----CCCCCCCChhhHHH
Q 001656          228 GLGVEWKNSILIFDEAHNLEGICADAASFDLSSGLLT---ACISEAKNCIDISSTR----RG----QSSDETLNPDNFAI  296 (1036)
Q Consensus       228 ~l~i~~~~~IlIfDEAHNLed~~~~a~S~~ls~~~L~---~~i~el~~~~~~~~~~----r~----~~~~~~~~~~~~~~  296 (1036)
                      +++++++|+|||||||||+|+.|++++|++|++.+|.   .+++|+..........    +.    ...--.+..+++++
T Consensus       241 ~~~v~LknsIVIfDEAHNiEdic~esaS~~lts~~l~~~~~l~~e~~~~~~~~~~~~~pl~ev~~~l~s~l~~~~e~La~  320 (945)
T KOG1132|consen  241 SHKVDLKNSIVIFDEAHNIEDICRESASFDLTSSDLASGLELINELEQAVTKAAAIYEPLREVSLDLISWLELELEDLAK  320 (945)
T ss_pred             cccccccccEEEEeccccHHHHHhhcccccccHHHHHHHHHHHHHHHHHHhhhhhhcCchhhhhhccchhhhcchHHHHH
Confidence            9999999999999999999999999999999987776   5566665544321110    00    00001235677778


Q ss_pred             HHHHHHHHHHHHHhccccccccCCCCCcc-cHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHH
Q 001656          297 LRALLLKLEKRIAEVPINSKELGFTKPGP-YIYELLADLNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESIS  375 (1036)
Q Consensus       297 L~~lL~~Le~~i~~l~~~~~~~~~~~~g~-~i~e~l~~~~~~~~~~~~L~~~l~~i~~~L~~~~~~~~~~~~~~~L~~l~  375 (1036)
                      +..++..++..++.+..+....+++.|+. ++++.|.+++++.++..++.+.++.+...|+..++.. .....+....+.
T Consensus       321 l~~~~~~~~~~~d~~~~~~~~~giT~~~~~~l~e~~~~a~~t~e~~~~i~~~~~~~v~~le~~~q~~-~t~~~s~~~~~~  399 (945)
T KOG1132|consen  321 LKEILLFLEEAIDKVLLPLDDSGITRPGSPILYEEFAKALITSETAEKIVDSLDIAVQHLEGEKQGT-ATNTGSLWCIFA  399 (945)
T ss_pred             HHHHHHHhhhhcchhccccccccccCCCcHHHHHHHHHhccCccccccchhhHHHHHHHhhcccccc-hhcccchHHHHH
Confidence            88887888888888777766777888887 8889999999999998888888887777777665411 122233334467


Q ss_pred             HHHHHHHhcc---CCCCCce-------EEEEEEEccc----chh--hhhcCCC------CceEEEEEcCcHHHHHHhhhc
Q 001656          376 NILKIIFRDK---GTAHSAY-------YRVHVREADA----NAA--DVLKGKA------SRTLSWWCFNPGIAMQEFSRL  433 (1036)
Q Consensus       376 ~~L~~i~~~~---~~~~~~~-------y~v~v~~~~~----~~~--~~~~~~~------~~~L~~~cldPs~~~~~ll~~  433 (1036)
                      ++++++|+..   ...++.+       |.++-. ++.    +++  +...++.      -+.+.+||++|+..|++++.+
T Consensus       400 dlld~~fs~~~~~g~~~~~~~~~~e~s~~~~~~-~d~~~~~~~~~~~v~~~~~s~~~~~~~vi~~wcf~p~~sf~d~~~k  478 (945)
T KOG1132|consen  400 DLLDISFSVILQNGSFSSDASFSVEQSYSFGNH-LDAPHVINANLGDVWKGKSSRKLGNYPVINFWCFSPGYSFRDLLGK  478 (945)
T ss_pred             HHHHHHhhccccCCccccchhhhhhhhhccccc-CCcccccccccccccccccccccCcccceeeeecCcchhHHHHhcc
Confidence            8888887732   1111111       111100 000    011  0001111      135889999999999999997


Q ss_pred             cCCeEEEEccCCCChHHHHHHhCCCCCccccCCCcCCCCceEEEEccCCCCCccccccccCCCCHHHHHHHHHHHHHHHH
Q 001656          434 EVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIAR  513 (1036)
Q Consensus       434 ~~~svIltSgTLsp~~~f~~~LGl~~~~~le~p~v~~~~qi~v~iv~~gp~~~~l~~~Y~~r~~~~y~~~l~~~I~~l~~  513 (1036)
                      ++++||||||||+|+++|..+||++|...+++||+++..|+|+.+|+.||.+..|+++|.+|.+++|+.+||+.|.++++
T Consensus       479 ~vrsIiLtSGTLsP~~s~~~El~~~f~~~lEn~hii~~~qv~~~vv~~Gp~~~ql~sty~nr~~~ey~~~lg~~i~~v~r  558 (945)
T KOG1132|consen  479 GVRSIILTSGTLSPMDSFASELGLEFKIQLENPHIINKSQVWVGVVPKGPDGAQLDSTYGNRFTPEYLSELGEAILNVAR  558 (945)
T ss_pred             cceeEEEecccccCchhHHHHhCCccceeeecchhccccceEEEeeccCCCccccccccccccCHHHHHHHHHHHHHHHh
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCcEEEEecCHHHHHHHHHHHhhcCCCCchhHHHHHhhcCCceecCCCCCChHHHHHHHHHHhccCCCCCeEEEEEcc
Q 001656          514 IVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCR  593 (1036)
Q Consensus       514 ~vpggvLVfFpSy~~l~~v~~~~~~~~~~~~~~i~~~i~~~K~v~~E~~~~~~~~~~i~~f~~~i~~~~~~gaVLfaV~r  593 (1036)
                      ++|.|+|||||||.+|+++.++|+..      ++|++++..|.+++||+...++.+++..|..++.++...|+++|||||
T Consensus       559 vVp~G~L~FfPSY~vmdk~~tfw~~~------~~we~~~~vk~l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcR  632 (945)
T KOG1132|consen  559 VVPYGLLIFFPSYPVMDKLITFWQNR------GLWERMEKVKKLVVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCR  632 (945)
T ss_pred             hcccceEEeccchHHHHHHHHHHHcc------hHHHHhhcccCceeccCCccchHHHHHHHHHHhhCccccceEEEEEec
Confidence            99999999999999999999999954      899999999999999999999999999999999876677999999999


Q ss_pred             CCccccccCCCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHHccCCCCccchhhcccCCcccchHHHHHHHHHHhhCCcc
Q 001656          594 GKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVI  673 (1036)
Q Consensus       594 Gk~sEGIDf~gd~~R~VIIvGLPfp~~~Dp~v~~K~eyl~~~~~~~f~~~~~~~~~~l~g~~wy~~~A~r~v~QaiGRlI  673 (1036)
                      ||+|||+||+|+.+|+||++|||||+..||+|++|++|+|.+....+.+     ...++|.+||..+|+|+|||||||+|
T Consensus       633 GKVSEGlDFsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~-----s~~lsg~eWY~~qA~RAvNQAiGRvi  707 (945)
T KOG1132|consen  633 GKVSEGLDFSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAK-----SQLLSGQEWYSQQAYRAVNQAIGRVI  707 (945)
T ss_pred             ccccCCCCccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccc-----cccccchHHHHhhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999986643211     23689999999999999999999999


Q ss_pred             ccCCCcEEEEEEecCCCCchhhhHHHhhhhcchhccCChhHHHHHHHHHHHHhhhcCCCccccccccccCCccccccccc
Q 001656          674 RHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVYTLTRFFREERICGSTNLKLIKTEVSGDVRELKPVDL  753 (1036)
Q Consensus       674 R~~~D~G~viLlD~Rf~~~~y~~~l~~wl~~~i~~~~~~~e~~~~l~~Ff~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  753 (1036)
                      ||++|||+++|+|.||.+.+-...+|+|+++ ..+.....+++..+..+|+......+......++++.     +.|..+
T Consensus       708 RHR~D~Gav~l~D~Rfe~~~~~~~lskw~r~-~~~~~~~~~~~~~~~r~~r~~~~nn~~~~~~~~~~~~-----~~~l~~  781 (945)
T KOG1132|consen  708 RHRNDYGAVILCDDRFENADARSQLSKWIRS-VKCDSRYCEVISSLARKFRTHRSNNSATLVTEQENNI-----TSPLLL  781 (945)
T ss_pred             hhhcccceeeEeechhhcCccccccchhhhc-cccccccccccchhhhhhhcccccccccccchhhccc-----ccchhh
Confidence            9999999999999999998877889999998 5555666777778888888887777777777666663     223332


Q ss_pred             cccccccccCCCCcccccccchhhhhccCCccccccccccCCCCCCCcccCcccccccCChhhHHHHHHhhhcccccccc
Q 001656          754 LDKISLEEVPSSTPAVDQACYSLHEVKNRNTSSHSGEIVPANRSSLSPYKGIWASELKNSSDLIQFEKKLLLSGRKSIQY  833 (1036)
Q Consensus       754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  833 (1036)
                      +.+.+    ++|+       +|+.+..+..+.+  .+ .+||++...-..|+|...     |              +-+ 
T Consensus       782 v~~t~----~~p~-------k~~~v~~s~~s~~--~~-~~a~k~e~~~~~~~W~~~-----~--------------~~~-  827 (945)
T KOG1132|consen  782 VKSTE----DSPS-------KNVGVPQSECSRV--EA-PLANKAEKLNGQGKWVRQ-----D--------------GCV-  827 (945)
T ss_pred             hhhcc----cCcc-------cccccccchhhhh--cc-hhhccchhcccccceeec-----C--------------ccc-
Confidence            22333    2222       6666666666653  22 889999888888888432     0              100 


Q ss_pred             ccccccccccCcccCCCccccccccccccccccccccCchhhhhhhhhcccccccccCCCCCCcccccccccCCCCCCCC
Q 001656          834 RDHEFIDLTSNSSLHAKPRKEELIAPCSTKKRKVLISESDQMQCVKKISEIASDAESSQPSSFIPITNKVKHEKPQISDS  913 (1036)
Q Consensus       834 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  913 (1036)
                         -.+.+...+.++ ..-+++       +  .+..  +|.. .++-.+++..           .++             
T Consensus       828 ---~~~~~k~~~s~P-~~~~~~-------~--~v~~--~ds~-~~q~~s~il~-----------f~~-------------  867 (945)
T KOG1132|consen  828 ---FLTILKPFGSIP-NTCLGM-------K--QVKS--YDSE-FVQFLSSILF-----------FIS-------------  867 (945)
T ss_pred             ---ccccccccccCC-ccccch-------h--heee--ccCc-chhhhhhhHH-----------HHh-------------
Confidence               002333444444 212222       1  1111  1111 2222222222           000             


Q ss_pred             ccceeccCCCCCcCCCCcccc-cchhhhhccCCCCCCCCCCCCCccchhhHHHHHHHhhCHHHHHHHHHHHHHHhhhhhc
Q 001656          914 GSRIIAQGSAPSKVDGTTYRI-EAEIQSEKSKGSHSSAPPCGGEETKGSAFLIQVQEKLSATEYKEFVGFMKAMKSKAMK  992 (1036)
Q Consensus       914 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  992 (1036)
                                 ..+..+..++ ++-.+++|++++.          +.+++-..   |.+++.+|++|-++|.++|.+..+
T Consensus       868 -----------~~e~~~~a~~~~t~~l~~k~~~~~----------~~~~~~~S---~~~~~~~~~~f~~~l~~~~~~~~~  923 (945)
T KOG1132|consen  868 -----------VREVTISAAKENTTGLKKKSKLPE----------SIKSALSS---ELLSSEDYKAFGTYLQQYKKGERK  923 (945)
T ss_pred             -----------HHHhhccCCCcccccccccccCCc----------ccccccch---hhcCchhHHHHhHhHHHhcccccc
Confidence                       1111222222 3333777777652          12222222   999999999999999999999999


Q ss_pred             hHHHHHHHHHhhcCCCChhh
Q 001656          993 ISHVLQSIAKLFAGPERLPL 1012 (1036)
Q Consensus       993 ~~~~~~~~~~~~~~~~~~~~ 1012 (1036)
                      ..++++.+..+|++++++.+
T Consensus       924 ~~~l~~~~~~i~~~~k~~~~  943 (945)
T KOG1132|consen  924 LKNLMQSKRQLFTIKKADSL  943 (945)
T ss_pred             hhhHhhhhhhccCchhhhcc
Confidence            99999999999999998765

>TIGR00604 rad3 DNA repair helicase (rad3)	Back alignment and domain information

>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]	Back alignment and domain information

>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4	Back alignment and domain information

>smart00489 DEXDc3 DEAD-like helicases superfamily	Back alignment and domain information

>smart00488 DEXDc2 DEAD-like helicases superfamily	Back alignment and domain information

>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A	Back alignment and domain information

>smart00491 HELICc2 helicase superfamily c-terminal domain	Back alignment and domain information

>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin	Back alignment and domain information

>smart00492 HELICc3 helicase superfamily c-terminal domain	Back alignment and domain information

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>PTZ00110 helicase; Provisional	Back alignment and domain information

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family	Back alignment and domain information

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional	Back alignment and domain information

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional	Back alignment and domain information

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional	Back alignment and domain information

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PTZ00424 helicase 45; Provisional	Back alignment and domain information

>TIGR01389 recQ ATP-dependent DNA helicase RecQ	Back alignment and domain information

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional	Back alignment and domain information

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional	Back alignment and domain information

>PRK13767 ATP-dependent helicase; Provisional	Back alignment and domain information

>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase	Back alignment and domain information

>PRK01172 ski2-like helicase; Provisional	Back alignment and domain information

>PRK02362 ski2-like helicase; Provisional	Back alignment and domain information

>TIGR00580 mfd transcription-repair coupling factor (mfd)	Back alignment and domain information

>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional	Back alignment and domain information

>PRK09401 reverse gyrase; Reviewed	Back alignment and domain information

>PRK00254 ski2-like helicase; Provisional	Back alignment and domain information

>TIGR01587 cas3_core CRISPR-associated helicase Cas3	Back alignment and domain information

>PHA02558 uvsW UvsW helicase; Provisional	Back alignment and domain information

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype	Back alignment and domain information

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3	Back alignment and domain information

>PRK14701 reverse gyrase; Provisional	Back alignment and domain information

>TIGR01054 rgy reverse gyrase	Back alignment and domain information

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases	Back alignment and domain information

>PRK10689 transcription-repair coupling factor; Provisional	Back alignment and domain information

>cd00268 DEADc DEAD-box helicases	Back alignment and domain information

>PHA02653 RNA helicase NPH-II; Provisional	Back alignment and domain information

>PRK09751 putative ATP-dependent helicase Lhr; Provisional	Back alignment and domain information

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB	Back alignment and domain information

>TIGR03714 secA2 accessory Sec system translocase SecA2	Back alignment and domain information

>PRK12898 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>smart00487 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR00963 secA preprotein translocase, SecA subunit	Back alignment and domain information

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>PRK09200 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>PRK09694 helicase Cas3; Provisional	Back alignment and domain information

>cd00046 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>PRK04914 ATP-dependent helicase HepA; Validated	Back alignment and domain information

>PRK13104 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family	Back alignment and domain information

>PRK13766 Hef nuclease; Provisional	Back alignment and domain information

>COG1204 Superfamily II helicase [General function prediction only]	Back alignment and domain information

>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>KOG0354 consensus DEAD-box like helicase [General function prediction only]	Back alignment and domain information

>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>PRK12904 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A	Back alignment and domain information

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK10536 hypothetical protein; Provisional	Back alignment and domain information

>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG4889 Predicted helicase [General function prediction only]	Back alignment and domain information

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>TIGR00376 DNA helicase, putative	Back alignment and domain information

>COG1201 Lhr Lhr-like helicases [General function prediction only]	Back alignment and domain information

>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e	Back alignment and domain information

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>PF13245 AAA_19: Part of AAA domain	Back alignment and domain information

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA	Back alignment and domain information

>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]	Back alignment and domain information

>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG1803 consensus DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>PRK12899 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type	Back alignment and domain information

>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]	Back alignment and domain information

>TIGR00603 rad25 DNA repair helicase rad25	Back alignment and domain information

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional	Back alignment and domain information

>KOG4204 consensus Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]	Back alignment and domain information

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]	Back alignment and domain information

>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>KOG0346 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type	Back alignment and domain information

>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]	Back alignment and domain information

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat	Back alignment and domain information

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>smart00490 HELICc helicase superfamily c-terminal domain	Back alignment and domain information

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>PRK13103 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0343 consensus RNA Helicase [RNA processing and modification]	Back alignment and domain information

>KOG0334 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]	Back alignment and domain information

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR00603 rad25 DNA repair helicase rad25	Back alignment and domain information

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN	Back alignment and domain information

>PRK05298 excinuclease ABC subunit B; Provisional	Back alignment and domain information

>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]	Back alignment and domain information

>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>PHA02244 ATPase-like protein	Back alignment and domain information

>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional	Back alignment and domain information

>PRK13107 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA	Back alignment and domain information

>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>PRK13766 Hef nuclease; Provisional	Back alignment and domain information

>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK12902 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK09694 helicase Cas3; Provisional	Back alignment and domain information

>PRK13531 regulatory ATPase RavA; Provisional	Back alignment and domain information

>COG0714 MoxR-like ATPases [General function prediction only]	Back alignment and domain information

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif	Back alignment and domain information

>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>PRK06835 DNA replication protein DnaC; Validated	Back alignment and domain information

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK08181 transposase; Validated	Back alignment and domain information

>PRK12900 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG1204 Superfamily II helicase [General function prediction only]	Back alignment and domain information

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]	Back alignment and domain information

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]	Back alignment and domain information

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	Back alignment and domain information

>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PRK13407 bchI magnesium chelatase subunit I; Provisional	Back alignment and domain information

>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical	Back alignment and domain information

>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>PRK12906 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains	Back alignment and domain information

>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]	Back alignment and domain information

>KOG0343 consensus RNA Helicase [RNA processing and modification]	Back alignment and domain information

>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains	Back alignment and domain information

>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK12402 replication factor C small subunit 2; Reviewed	Back alignment and domain information

>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]	Back alignment and domain information

>PRK12903 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1	Back alignment and domain information

>PRK12906 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>PRK12901 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs	Back alignment and domain information

>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK12326 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit	Back alignment and domain information

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]	Back alignment and domain information

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	Back alignment and domain information

>smart00382 AAA ATPases associated with a variety of cellular activities	Back alignment and domain information

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit	Back alignment and domain information

>PRK09183 transposase/IS protein; Provisional	Back alignment and domain information

>PRK08939 primosomal protein DnaI; Reviewed	Back alignment and domain information

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK13894 conjugal transfer ATPase TrbB; Provisional	Back alignment and domain information

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I	Back alignment and domain information

>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK06526 transposase; Provisional	Back alignment and domain information

>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A	Back alignment and domain information

>PRK07952 DNA replication protein DnaC; Validated	Back alignment and domain information

>PRK08116 hypothetical protein; Validated	Back alignment and domain information

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX	Back alignment and domain information

>PRK05298 excinuclease ABC subunit B; Provisional	Back alignment and domain information

>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3	Back alignment and domain information

Homologous Structure Templates