Citrus Sinensis ID: 001684

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030
MEETADESNANKKCNNNNNTTNSKTRTFRGSANTNPHRHQYQYQYQYQYQYQQHHQLWQYSNHFGFCNQNQYQNYYPALLPLPPTIPLQLALAPPLPQNQSFVSKTHLQKPSCKLHNPSLATSSDTHAHVVNISPEGLCRRNKVAVKGNDGRRITGAKTQALVAARRPDAGGVEGAVISLLANHFLVQLDPSQRIFHYNVEMSPSPSKEVARLIKQKLVEENSSMLSGAYPAFDGRKNIYSPVEFENDRLEFFVSLPIPTSKSVLPSGELKELIHKQHQLKLFRINIKLVSKYDGKELSRYLSKEDNDWIPLPQDYLHALDVVLRENPSEKCIPVGRSLYSSSMGGAKEIGGGAVGLRGFFQSLRPTQQGLSLNVDSSVSAFHESVGVIPYLQKRLEFLKDLSQRKTRGLSGDQKKEVERALKNIRVFVCHRETVQRYRVYGLTEEVTENLWFADRDGKNIRLLSYFKDHYNYNIQFRNLPCLQISRSKPCYLPMELCMICEGQKFLGKLSDDQTARILKMGCQRPKERKAMIDGVMRGPVGPTSGNQGREFKLHVSREMTRLNGRILQPPKLKLGDGGHIRDLVPCRHDRQWNFLESHVFEGTRIERWALLSFGGSHDQKSAIPKFICQLSQRCEQLGIFLNKSTIISPQFEQTHVLNNVSLLESKLKKIHEAASNNLQLLICVMERKHKGYADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFFPDEPVIFMGADVTHPHPLDDFSPSVAAVVGSMNWPAANKYASRMRSQTHRQEIIQDLGVMVGELLDDFYHELNKLPRRIIFFRDGVSETQFYKVLQEELQSIREACSRFPGYSPPITFVVVQKRHHTRLFPYDNDPSSAHNQSSDENIPPGTVVDTVITHPREFDFYLCSHWGVKGTSRPTHYHILWDDNKFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLERSESATLMGSSSAICRAAPPKAAPLPKLSENVKKLMFYC
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEcccccEEEEEEEEcccccHHHHHHHHHHHHHHHccccccccEEccccccEEcccccccccEEEEEEccccccccccccccHHHHHHccccccEEEEEEEEEEEEcHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccccccccccccccccEEccccEEEEEcEEEEEcccccEEEEEEEccccEEEccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccEEEEEccccccEEEEcccccccccccccccccccEEEHHHHHHHHcccccccccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccEEEccccEEEEEEEEcccEEEEcccccccccccccccccEEcccccccccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHccEEcccccccccccccccccccHHHHHHHHHHHHHHHccccEEEEEEEccccccHHHHHHHHHHccccccEEEEccccccccHHHHHHHHHHHHHccccccEEEcccccccccccccccccEEEEEcccccccccccccccEEEEEEEEccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccccccccccccccccccccEEEcccccccccccEEEEccccccccccccEEEEEEccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEc
ccccccccccccccccccccccccccEccccccccccccccEEEEEEcEcEccccEccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEcccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHccccccccccccEEcccccccccEEEEEEEccccccccccccccccccccccccEEEEEEEEEEEEccHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccEcccccccccccccccccccEEEEccccccccccccccEEEEEccHHHHccccHHHHHHHHHHHccHHHHccccccccHHHHHHHHHHHcccEEEEEccccEEEEEEEccccccHHccccccccccEEEHHHHHHHHcccEEEccccccccccccccccccHHHHHHHcHHHHHHHccHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccHHHHHcccEEccccEEEEEEEcccccEEEcccccEEEEcccccccEEEccccEEEccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEEcccccccccEEEEcccEEEEEEEEEcccccccccHHHHHHHEEEEEEEcccccHEHHHccccccccEEEccccEEEEEcccccccccccccccEEEEEEccccccccHHEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccEEcccccccccccccccccccccccEEcccEcccccccEEEEcccccccccccccEEEEEccccccHHHHHHHHHHHcHEEHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHcHcHHHHHEEEEc
meetadesnankkcnnnnnttnsktrtfrgsantnphrhqyqYQYQYQYQYQQHHQLWQysnhfgfcnqnqyqnyypallplpptiplqlalapplpqnqsfvskthlqkpscklhnpslatssdthahvvnispeglcrrnkvavkgndgrritGAKTQALVAarrpdaggvEGAVISLLANHFlvqldpsqrifhynvemspspsKEVARLIKQKLVEEnssmlsgaypafdgrkniyspvefendrleffvslpiptsksvlpsgeLKELIHKQHQLKLFRINIKLVSKYDGKELSRYLskedndwiplpqdYLHALDVVLrenpsekcipvgrslysssmggakeigggavglrgffqslrptqqglslnvdsSVSAFHESVGVIPYLQKRLEFLKDLSQrktrglsgdqKKEVERALKNIRVFVCHRETVQRYRVYGLTEEVTENlwfadrdgknIRLLSYFKDHynyniqfrnlpclqisrskpcylpmelcmicegqkflgklSDDQTARILKMGCQRPKERKAMidgvmrgpvgptsgnqgrefKLHVSREMTRlngrilqppklklgdgghirdlvpcrhdrqwnfleshvfegTRIERWALLsfggshdqksaIPKFICQLSQRCEQLGIFlnkstiispqfeqtHVLNNVSLLESKLKKIHEAASNNLQLLICVMERKHKGYADLKRIAETSVGVVSQcclysnlgklSSQFLANLALKINAKVGGCTVALYnslpsqiprlffpdepvifmgadvthphplddfspsvAAVVGSMNWPAANKYASRMRSQTHRQEIIQDLGVMVGELLDDFYHELNKLPRRIIFFRDGVSETQFYKVLQEELQSIREACsrfpgysppiTFVVVQkrhhtrlfpydndpssahnqssdenippgtvvdtvithprefdfylcshwgvkgtsrpthyhilwddnkftsdELQKLVYNLCYTfvrctkpvslvppayYAHLAAYRGRLYlersesatlmgsssaicraappkaaplpklsENVKKLMFYC
meetadesnankkcnnnnnttnsktrtfrgsantnpHRHQYQYQYQYQYQYQQHHQLWQYSNHFGFCNQNQYQNYYPALLPLPPTIPLQLALAPPLPQNQSFVSKTHLQKPSCKLHNPSLATSSDTHAHVVnispeglcrrnkvavkgndgrritgaktqalvAARRPDAGGVEGAVISLLANHFLVQLDPSQRIFHYNVEMSPSPSKEVARLIKQKLVEENSSmlsgaypafdgrKNIYSPVEFENDRLEFFVSLPIPTSKSVLPSGELKELIHKQHQLKLFRINIKLVSKYDGKELSRYLSKEDNDWIPLPQDYLHALDVVLRENPSEKCIPVGRSLYSSSMGGAKEIGGGAVGLRGFFQSLRPTQQGLSLNVDSSVSAFHESVGVIPYLQKRLEFLKDLsqrktrglsgdqkkeveRALKnirvfvchretvqryrvyglteevtenlwfadrdgKNIRLLSYFKDHYNYNIQFRNLPCLQISRSKPCYLPMELCMICEGQKFLGKLSDDQTARILKmgcqrpkerkamidgvmrgpvgptsgnqgreFKLHVSREMTrlngrilqppklklgdggHIRDLVPCRHDRQWNFLESHVFEGTRIERWALLSFGGSHDQKSAIPKFICQLSQRCEQLGIFLNKSTIISPQFEQTHVLNNVSLLESKLKKIHEAASNNLQLLICVMERKHKGYADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFFPDEPVIFMGADVTHPHPLDDFSPSVAAVVGSMNWPAANKYASRMRSQTHRQEIIQDLGVMVGELLDDFYHELNKLPRRIIFFRDGVSETQFYKVLQEELQSIREACSRFPGYSPPITFVVVQKRHHTRLFPYDNDPSSAHNQSSDENIPPGTVVDTVITHPREFDFYLCSHWGVKGTSRPTHYHILWDDNKFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLERSESATLMGSSSAICraappkaaplpklsenvkklmFYC
MEETADESnankkcnnnnnttnsktRTFRGSANTNPHRhqyqyqyqyqyqyqqhhqLWQYSNHFGFCNQNQYQNYYpallplpptiplqlalapplpQNQSFVSKTHLQKPSCKLHNPSLATSSDTHAHVVNISPEGLCRRNKVAVKGNDGRRITGAKTQALVAARRPDAGGVEGAVISLLANHFLVQLDPSQRIFHYNVEMSPSPSKEVARLIKQKLVEENSSMLSGAYPAFDGRKNIYSPVEFENDRLEFFVSLPIPTSKSVLPSGELKELIHKQHQLKLFRINIKLVSKYDGKELSRYLSKEDNDWIPLPQDYLHALDVVLRENPSEKCIPVGRSLYSSSMggakeigggavgLRGFFQSLRPTQQGLSLNVDSSVSAFHESVGVIPYLQKRLEFLKDLSQRKTRGLSGDQKKEVERALKNIRVFVCHRETVQRYRVYGLTEEVTENLWFADRDGKNIRLLSYFKDHYNYNIQFRNLPCLQISRSKPCYLPMELCMICEGQKFLGKLSDDQTARILKMGCQRPKERKAMIDGVMRGPVGPTSGNQGREFKLHVSREMTRLNGRILQPPKLKLGDGGHIRDLVPCRHDRQWNFLESHVFEGTRIERWALLSFGGSHDQKSAIPKFICQLSQRCEQLGIFLNKSTIISPQFEQTHVLNNVSLLESKLKKIHEAASNNLQLLICVMERKHKGYADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFFPDEPVIFMGADVTHPHPLDDFSPSVAAVVGSMNWPAANKYASRMRSQTHRQEIIQDLGVMVGELLDDFYHELNKLPRRIIFFRDGVSETQFYKVLQEELQSIREACSRFPGYSPPITFVVVQKRHHTRLFPYDNDPSSAHNQSSDENIPPGTVVDTVITHPREFDFYLCSHWGVKGTSRPTHYHILWDDNKFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLERSESATLMGSSSAICRaappkaaplpklSENVKKLMFYC
**************************************HQYQYQYQYQYQYQQHHQLWQYSNHFGFCNQNQYQNYYPALLPLPPTIPLQLALA***********************************HVVNISPEGLCRRNKVAVKGNDGRRITGAKTQALVAARRPDAGGVEGAVISLLANHFLVQLDPSQRIFHYNV***************************GAYPAFDGRKNIYSPVEFENDRLEFFVSLPIPTSKSVLPSGELKELIHKQHQLKLFRINIKLVSKYDGKELSRYLSKEDNDWIPLPQDYLHALDVVLRENPSEKCIPVGRSLYSSSMGGAKEIGGGAVGLRGFFQSLRPTQQGLSLNVDSSVSAFHESVGVIPYLQKRLEFLKD******************RALKNIRVFVCHRETVQRYRVYGLTEEVTENLWFADRDGKNIRLLSYFKDHYNYNIQFRNLPCLQISRSKPCYLPMELCMICEGQKFLGKLSDDQTARILKMG****************************************LNGRILQPPKLKLGDGGHIRDLVPCRHDRQWNFLESHVFEGTRIERWALLSFGGSHDQKSAIPKFICQLSQRCEQLGIFLNKSTIISPQFEQTHVLNNVSLLESKLKKIHEAASNNLQLLICVMERKHKGYADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFFPDEPVIFMGADVTHPHPLDDFSPSVAAVVGSMNWPAANKYA*******HRQEIIQDLGVMVGELLDDFYHELNKLPRRIIFFRDGVSETQFYKVLQEELQSIREACSRFPGYSPPITFVVVQKRHHTRLFPY*******************TVVDTVITHPREFDFYLCSHWGVKGTSRPTHYHILWDDNKFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLE***************************************
****************************************************************************************************************************************************************************VEGAVISLLANHFLVQLDPSQRIFHYNVEMSPSPSKEVARLIKQKLVEENSSMLSGAYPAFDGRKNIYSPVEFENDRLEFFVSLPIPTSKSV*************HQLKLFRINIKLVSKYDGKELSRYLSKEDN*WIPLPQDYLHALDVVLRENPSEKCIPVGRSLYSSSMG*AKEIGGGAVGLRGFFQSLRPTQQGLSLNVDSSVSAFHESVGVIPYLQKRLEFLKDLSQRKTRGLSGDQKKEVERALKNIRVFVCHRETVQRYRVYGLTEEVTENLWFADRDGKNIRLLSYFKDHYNYNIQFRNLPCLQISRSK**YLPMELCMICEGQKFLG*****QTARILKMGCQRPKERKAMIDGVMRGPVGPTSGNQGREFKLHVSREMTRLNGRILQPPKLKLGDGGH****VPCRHDRQWNFLESHVFEGTRIERWALLSFGGSHDQKSAIPKFICQLSQRCEQLGIFLNKSTIISPQFEQTHVLNNVSLLESKLKKIHEAASNNLQLLICVMERKHKGYADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFFPDEPVIFMGADV***********SVAAVVGSMNWPAANKYASRMRSQTHRQEIIQDLGVMVGELLDDFYHELNKLPRRIIFFRDGVSETQFYKVLQEELQSIREACSRFPGYSPPITFVVVQKRHHTRLFPYDN************NIPPGTVVDTVITHPREFDFYLCSHWGVKGTSRPTHYHILWDDNKFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRL******************************LSENVKKLMFYC
**********NKKCNNNNNTTNSKTRTFRGSANTNPHRHQYQYQYQYQYQYQQHHQLWQYSNHFGFCNQNQYQNYYPALLPLPPTIPLQLALAPPLPQNQSF**********CKLHNPSLATSSDTHAHVVNISPEGLCRRNKVAVKGNDGRRITGAKTQALVAARRPDAGGVEGAVISLLANHFLVQLDPSQRIFHYNVEMSPSPSKEVARLIKQKLVEENSSMLSGAYPAFDGRKNIYSPVEFENDRLEFFVSLPIPTSKSVLPSGELKELIHKQHQLKLFRINIKLVSKYDGKELSRYLSKEDNDWIPLPQDYLHALDVVLRENPSEKCIPVGRSLYSSSMGGAKEIGGGAVGLRGFFQSLRPTQQGLSLNVDSSVSAFHESVGVIPYLQKRLEFLKDLSQRKTRGLSGDQKKEVERALKNIRVFVCHRETVQRYRVYGLTEEVTENLWFADRDGKNIRLLSYFKDHYNYNIQFRNLPCLQISRSKPCYLPMELCMICEGQKFLGKLSDDQTARILKMGCQRPKERKAMIDGVMRGPVGPTSGNQGREFKLHVSREMTRLNGRILQPPKLKLGDGGHIRDLVPCRHDRQWNFLESHVFEGTRIERWALLSFGGSHDQKSAIPKFICQLSQRCEQLGIFLNKSTIISPQFEQTHVLNNVSLLESKLKKIHEAASNNLQLLICVMERKHKGYADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFFPDEPVIFMGADVTHPHPLDDFSPSVAAVVGSMNWPAANK*********HRQEIIQDLGVMVGELLDDFYHELNKLPRRIIFFRDGVSETQFYKVLQEELQSIREACSRFPGYSPPITFVVVQKRHHTRLFPYDND***********NIPPGTVVDTVITHPREFDFYLCSHWGVKGTSRPTHYHILWDDNKFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLERSESATLMGSSSAICRAAPPKAAPLPKLSENVKKLMFYC
***********************KT*TF*G*ANTNPHRHQYQYQYQYQYQYQQHHQLWQYSNHFGFCNQNQYQNYYPALLPLPPTIPLQLALAPPL******************************************************************VAAR*****GVEGAVISLLANHFLVQLDPSQRIFHYNVEMSPSPSKEVARLIKQKLVEENSSMLSGAYPAFDGRKNIYSPVEFENDRLEFFVSLPIP******************HQLKLFRINIKLVSKYDGKELSRYLSKEDNDWIPLPQDYLHALDVVLRENPSEKCIPVGRSLYSSSMGGAKEIGGGAVGLRGFFQSLRPTQQGLSLNVDSSVSAFHESVGVIPYLQKRLEFLKDLSQRKTRGLSGDQKKEVERALKNIRVFVCHRETVQRYRVYGLTEEVTENLWFADRDGKNIRLLSYFKDHYNYNIQFRNLPCLQISRSKPCYLPMELCMICEGQKFLGKLSDDQTARILKMGCQRPKERKAMIDGVMRGPVGPTSGNQGREFKLHVSREMTRLNGRILQPPKLKLGDGGHIRDLVPCRHDRQWNFLESHVFEGTRIERWALLSFGGSHDQKSAIPKFICQLSQRCEQLGIFLNKSTIISPQFEQTHVLNNVSLLESKLKKIHEAASNNLQLLICVMERKHKGYADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFFPDEPVIFMGADVTHPH*LDDFSPSVAAVVGSMNWPAANKYASRMRSQTHRQEIIQDLGVMVGELLDDFYHELNKLPRRIIFFRDGVSETQFYKVLQEELQSIREACSRFPGYSPPITFVVVQKRHHTRLFPYD***********DENIPPGTVVDTVITHPREFDFYLCSHWGVKGTSRPTHYHILWDDNKFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLER********************AAPLPKLSENVKKLMFYC
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEETADESNANKKCNNNNNTTNSKTRTFRGSANTNPHRHQYQYQYQYQYQYQQHHQLWQYSNHFGFCNQNQYQNYYPALLPLPPTIPLQLALAPPLPQNQSFVSKTHLQKPSCKLHNPSLATSSDTHAHVVNISPEGLCRRNKVAVKGNDGRRITGAKTQALVAARRPDAGGVEGAVISLLANHFLVQLDPSQRIFHYNVEMSPSPSKEVARLIKQKLVEENSSMLSGAYPAFDGRKNIYSPVEFENDRLEFFVSLPIPTSKSVLPSGELKELIHKQHQLKLFRINIKLVSKYDGKELSRYLSKEDNDWIPLPQDYLHALDVVLRENPSEKCIPVGRSLYSSSMGGAKEIGGGAVGLRGFFQSLRPTQQGLSLNVDSSVSAFHESVGVIPYLQKRLEFLKDLSQRKTRGLSGDQKKEVERALKNIRVFVCHRETVQRYRVYGLTEEVTENLWFADRDGKNIRLLSYFKDHYNYNIQFRNLPCLQISRSKPCYLPMELCMICEGQKFLGKLSDDQTARILKMGCQRPKERKAMIDGVMRGPVGPTSGNQGREFKLHVSREMTRLNGRILQPPKLKLGDGGHIRDLVPCRHDRQWNFLESHVFEGTRIERWALLSFGGSHDQKSAIPKFICQLSQRCEQLGIFLNKSTIISPQFEQTHVLNNVSLLESKLKKIHEAASNNLQLLICVMERKHKGYADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFFPDEPVIFMGADVTHPHPLDDFSPSVAAVVGSMNWPAANKYASRMRSQTHRQEIIQDLGVMVGELLDDFYHELNKLPRRIIFFRDGVSETQFYKVLQEELQSIREACSRFPGYSPPITFVVVQKRHHTRLFPYDNDPSSAHNQSSDENIPPGTVVDTVITHPREFDFYLCSHWGVKGTSRPTHYHILWDDNKFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLERSESATLMGSSSAICRAAPPKAAPLPKLSENVKKLMFYC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1030 2.2.26 [Sep-21-2011]
Q9C793990 Protein argonaute 7 OS=Ar yes no 0.818 0.851 0.729 0.0
Q75HC21048 Protein argonaute 7 OS=Or yes no 0.829 0.814 0.691 0.0
Q7XSA21118 Protein argonaute 1B OS=O no no 0.797 0.734 0.413 0.0
O043791048 Protein argonaute 1 OS=Ar no no 0.797 0.783 0.411 1e-180
Q6EU141082 Protein argonaute 1A OS=O no no 0.802 0.764 0.402 1e-180
Q7Y0011049 Protein argonaute 12 OS=O no no 0.805 0.791 0.409 1e-178
Q69VD5979 Protein argonaute PNH1 OS no no 0.805 0.847 0.405 1e-176
Q851R21058 Protein argonaute MEL1 OS no no 0.798 0.776 0.402 1e-176
Q6K9721011 Protein argonaute 1C OS=O no no 0.799 0.814 0.398 1e-171
Q9XGW1988 Protein argonaute 10 OS=A no no 0.801 0.836 0.395 1e-171
>sp|Q9C793|AGO7_ARATH Protein argonaute 7 OS=Arabidopsis thaliana GN=AGO7 PE=2 SV=1 Back     alignment and function desciption
 Score = 1324 bits (3426), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 635/871 (72%), Positives = 727/871 (83%), Gaps = 28/871 (3%)

Query: 161  ALVAARRPDAGGVEGAVISLLANHFLVQLDPSQRIFHYNVEMSPSPSKEVARLIKQKLVE 220
            ALV A+RPD GG +G+VI LLANHFLV+ D SQRI+HYNVE+SP PSKE+AR+IKQKLVE
Sbjct: 147  ALVVAKRPDFGGQDGSVIYLLANHFLVKFDSSQRIYHYNVEISPQPSKEIARMIKQKLVE 206

Query: 221  ENSSMLSGAYPAFDGRKNIYSPVEFENDRLEFFVSLPIPTSKSVLPSGELKELIHKQHQL 280
             + +  SG  PAFDGR+NIYSPVEF+ DRLEFFV+LPIP+ K+V+  G+L+E   ++   
Sbjct: 207  TDRNSFSGVVPAFDGRQNIYSPVEFQGDRLEFFVNLPIPSCKAVMNYGDLREKQPQKKIE 266

Query: 281  KLFRINIKLVSKYDGKELSRYLSKEDNDWIPLPQDYLHALDVVLRENPSEKCIPVGRSLY 340
            KLFR+N+KLVSK+DGKE      KE  DW PLP +Y+HALDV+LRENP EKC  +GRS Y
Sbjct: 267  KLFRVNMKLVSKFDGKEQR----KEGEDWAPLPPEYIHALDVILRENPMEKCTSIGRSFY 322

Query: 341  SSSMGGAKEIGGGAVGLRGFFQSLRPTQQGLSLNVDSSVSAFHESVGVIPYLQKRLEFLK 400
            SSSMGG+KEIGGGAVGLRGFFQSLR TQQGL+LN+D S++AFHES+GVI YLQKRLEFL 
Sbjct: 323  SSSMGGSKEIGGGAVGLRGFFQSLRHTQQGLALNMDLSITAFHESIGVIAYLQKRLEFLT 382

Query: 401  DLSQRKTRGLSGDQKKEVERALKNIRVFVCHRETVQRYRVYGLTEEVTENLWFADRDGKN 460
            DL + K R LS ++K+EVE+ALKNIRVFVCHRETVQRYRVYGLTEE+TEN+WF DR+GK 
Sbjct: 383  DLPRNKGRELSLEEKREVEKALKNIRVFVCHRETVQRYRVYGLTEEITENIWFPDREGKY 442

Query: 461  IRLLSYFKDHYNYNIQFRNLPCLQISRSKPCYLPMELCMICEGQKFLGKLSDDQTARILK 520
            +RL+SYFKDHY Y IQF+NLPCLQISR++PCYLPMELCMICEGQKFLGKLSDDQ A+I+K
Sbjct: 443  LRLMSYFKDHYGYEIQFKNLPCLQISRARPCYLPMELCMICEGQKFLGKLSDDQAAKIMK 502

Query: 521  MGCQRPKERKAMIDGVMRGPVGPTSGNQGREFKLHVSREMTRLNGRILQPPKLKLGDGGH 580
            MGCQ+P ERKA+ID VM G VGP+SGNQ REF L VSREMT L GRILQPPKLKL     
Sbjct: 503  MGCQKPNERKAIIDKVMTGSVGPSSGNQTREFNLEVSREMTLLKGRILQPPKLKL----- 557

Query: 581  IRDLVPCRHDRQWNFLESHVFEGTRIERWALLSFGGSHDQKSAIPKFICQLSQRCEQLGI 640
                     DR  N  ES VF+GTRIERWAL+S GGS DQKS IPKFI +L+Q+CE LG+
Sbjct: 558  ---------DRPRNLKESKVFKGTRIERWALMSIGGSSDQKSTIPKFINELTQKCEHLGV 608

Query: 641  FLNKSTIISPQFEQTHVLNNVSLLESKLKKIHEAASNNLQLLICVMERKHKGYADLKRIA 700
            FL+K+T+ S  FE +H+LNN+SLLESKLK+I  AASNNLQL+ICVME+KHKGY DLKRI+
Sbjct: 609  FLSKNTLSSTFFEPSHILNNISLLESKLKEIQRAASNNLQLIICVMEKKHKGYGDLKRIS 668

Query: 701  ETSVGVVSQCCLYSNLGKLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFFPDEPV 760
            ET +GVV+QCCLY N+ KLSSQF++NLALKINAK+GG    LYNS+PS IPRL  PDEPV
Sbjct: 669  ETRIGVVTQCCLYPNITKLSSQFVSNLALKINAKIGGSMTELYNSIPSHIPRLLRPDEPV 728

Query: 761  IFMGADVTHPHPLDDFSPSVAAVVGSMNWPAANKYASRMRSQTHRQEIIQDLGVMVGELL 820
            IFMGADVTHPHP DD SPSVAAVVGS+NWP AN+Y SRMRSQTHRQEIIQDL +MV ELL
Sbjct: 729  IFMGADVTHPHPFDDCSPSVAAVVGSINWPEANRYVSRMRSQTHRQEIIQDLDLMVKELL 788

Query: 821  DDFYHELNKLPRRIIFFRDGVSETQFYKVLQEELQSIREACSRFPGYSPPITFVVVQKRH 880
            DDFY  + KLP RIIFFRDGVSETQF KVLQEELQSI+ ACS+F  Y+P ITF VVQKRH
Sbjct: 789  DDFYKAVKKLPNRIIFFRDGVSETQFKKVLQEELQSIKTACSKFQDYNPSITFAVVQKRH 848

Query: 881  HTRLFPYDNDPSSAHNQSSDENIPPGTVVDTVITHPREFDFYLCSHWGVKGTSRPTHYHI 940
            HTRLF  D D          ENIPPGTVVDTVITHP+EFDFYLCSH GVKGTSRPTHYHI
Sbjct: 849  HTRLFRCDPD---------HENIPPGTVVDTVITHPKEFDFYLCSHLGVKGTSRPTHYHI 899

Query: 941  LWDDNKFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLER-SESATLM 999
            LWD+N+FTSDELQ+LVYNLCYTFVRCTKP+S+VPPAYYAHLAAYRGRLY+ER SES    
Sbjct: 900  LWDENEFTSDELQRLVYNLCYTFVRCTKPISIVPPAYYAHLAAYRGRLYIERSSESNGGS 959

Query: 1000 GSSSAICRAAPPKAAPLPKLSENVKKLMFYC 1030
             + S++ R  PPK  PLPKLS+NVK LMFYC
Sbjct: 960  MNPSSVSRVGPPKTIPLPKLSDNVKNLMFYC 990
Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as a microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Required for the processing of 21 nucleotide trans-acting siRNAs (ta-siRNAs) derived from TAS3a transcripts. Associates preferentially with the microRNA (miRNA) miR390 which guides the cleavage of TAS3 precursor RNA. Seems to act as miR390 specific slicer. Associates mainly with small RNAs of 21 nucleotide in length and with a 5' terminal adenosine. Acts in the RDR6/SGS3/DCL4/AGO7 trans-acting siRNA pathway involved in leaf developmental timing. Does not seems to act on leaf polarity. Required for the production of the 30-40nt bacterial-induced long siRNAs (lsiRNA). Involved in antiviral RNA silencing by contributing to efficient viral RNAs clearance. Targets less structured viral RNAs than AGO1 which is capable of targeting RNAs with more compact structures.
Arabidopsis thaliana (taxid: 3702)
>sp|Q75HC2|AGO7_ORYSJ Protein argonaute 7 OS=Oryza sativa subsp. japonica GN=AGO7 PE=2 SV=2 Back     alignment and function description
>sp|Q7XSA2|AGO1B_ORYSJ Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3 Back     alignment and function description
>sp|O04379|AGO1_ARATH Protein argonaute 1 OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1 Back     alignment and function description
>sp|Q6EU14|AGO1A_ORYSJ Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1 Back     alignment and function description
>sp|Q7Y001|AGO12_ORYSJ Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2 Back     alignment and function description
>sp|Q69VD5|PNH1_ORYSJ Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1 Back     alignment and function description
>sp|Q851R2|MEL1_ORYSJ Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1 Back     alignment and function description
>sp|Q6K972|AGO1C_ORYSJ Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1 Back     alignment and function description
>sp|Q9XGW1|AGO10_ARATH Protein argonaute 10 OS=Arabidopsis thaliana GN=AGO10 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1030
2254629431005 PREDICTED: protein argonaute 7-like [Vit 0.972 0.997 0.787 0.0
2555629701020 eukaryotic translation initiation factor 0.986 0.996 0.802 0.0
2254640731001 PREDICTED: protein argonaute 7-like [Vit 0.968 0.997 0.785 0.0
147801909 1277 hypothetical protein VITISV_012826 [Viti 0.932 0.751 0.808 0.0
3565025771031 PREDICTED: protein argonaute 7-like [Gly 0.987 0.986 0.751 0.0
3564948381031 PREDICTED: protein argonaute 7-like [Gly 0.990 0.989 0.746 0.0
2250308141020 reduced leaflet 3 [Lotus japonicus] 0.982 0.992 0.747 0.0
4494347521019 PREDICTED: protein argonaute 7-like [Cuc 0.985 0.996 0.744 0.0
4494783731019 PREDICTED: LOW QUALITY PROTEIN: protein 0.985 0.996 0.743 0.0
224112177870 argonaute protein group [Populus trichoc 0.844 1.0 0.858 0.0
>gi|225462943|ref|XP_002267746.1| PREDICTED: protein argonaute 7-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1668 bits (4320), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 813/1033 (78%), Positives = 901/1033 (87%), Gaps = 31/1033 (3%)

Query: 1    MEETADESNANKKCNNNNNTTNSKTRTFRGSANTNPHRHQYQYQYQYQYQYQQHHQLWQY 60
            MEET D+SNANKKC         K R+F G  N N                   HQL+QY
Sbjct: 1    MEET-DKSNANKKCT-------PKGRSFSGRTNPN------------------DHQLFQY 34

Query: 61   SNHFGFCNQNQYQNYYPALLPLPPTIPLQLALAPPLPQNQSFVSKTHLQKPSCKLHNPSL 120
            SN F F NQNQY++Y  ALLP PP IPLQ    PPLPQNQ+F SK HLQKPS K  NP  
Sbjct: 35   SNPFRFSNQNQYRSY-SALLPPPPPIPLQPTATPPLPQNQNFRSKAHLQKPSWKHDNPPR 93

Query: 121  ATSSDTHAHVVNIS--PEGLCRRNKVAVKGNDGRRITGAKTQALVAARRPDAGGVEGAVI 178
            ATSSDT   ++ +S  PE   RR   + +G +GR++  A TQA+V ARRPD+GG+EG VI
Sbjct: 94   ATSSDTQVSLLTVSTAPEDTERRASFSPRGENGRKVMAA-TQAMVTARRPDSGGIEGPVI 152

Query: 179  SLLANHFLVQLDPSQRIFHYNVEMSPSPSKEVARLIKQKLVEENSSMLSGAYPAFDGRKN 238
            SLLANHFLVQ D SQRIFHY+VE+SP+PSKEVAR+IK+KLVEE S  LSGA PAFDGRKN
Sbjct: 153  SLLANHFLVQFDSSQRIFHYDVEISPNPSKEVARMIKRKLVEEKSVELSGALPAFDGRKN 212

Query: 239  IYSPVEFENDRLEFFVSLPIPTSKSVLPSGELKELIHKQH-QLKLFRINIKLVSKYDGKE 297
            +YSPVEF+NDRLE F+ LPIPTSKS+ PSGE+K+   ++H Q+KLFRINIKLVSK+DGKE
Sbjct: 213  LYSPVEFQNDRLELFIGLPIPTSKSLSPSGEIKDAFQEKHPQIKLFRINIKLVSKFDGKE 272

Query: 298  LSRYLSKEDNDWIPLPQDYLHALDVVLRENPSEKCIPVGRSLYSSSMGGAKEIGGGAVGL 357
            L+ YLSKE +DWIPLPQDYLHALD+VLRE+P+EKC+PVGRSLYSSSMGG KEIGGGAVGL
Sbjct: 273  LNSYLSKEGDDWIPLPQDYLHALDIVLRESPTEKCVPVGRSLYSSSMGGTKEIGGGAVGL 332

Query: 358  RGFFQSLRPTQQGLSLNVDSSVSAFHESVGVIPYLQKRLEFLKDLSQRKTRGLSGDQKKE 417
            RGFFQSLRPTQQGL+LNVD SV+AFHES+G+IPYLQKR+EFL+DLSQRKTRGL+G+++KE
Sbjct: 333  RGFFQSLRPTQQGLALNVDFSVTAFHESIGIIPYLQKRVEFLRDLSQRKTRGLTGEERKE 392

Query: 418  VERALKNIRVFVCHRETVQRYRVYGLTEEVTENLWFADRDGKNIRLLSYFKDHYNYNIQF 477
            VE+ALKNIRVFVCHRETVQRYRV+ LTEE TENLWF DRDGK +RL++YFKDHY+Y+IQF
Sbjct: 393  VEKALKNIRVFVCHRETVQRYRVHSLTEETTENLWFKDRDGKILRLVNYFKDHYSYDIQF 452

Query: 478  RNLPCLQISRSKPCYLPMELCMICEGQKFLGKLSDDQTARILKMGCQRPKERKAMIDGVM 537
            RNLPCLQI+ SKPCYLPMELCMICEGQKFLGKLSDDQTARILKMGCQRP+ERKA+IDGVM
Sbjct: 453  RNLPCLQITSSKPCYLPMELCMICEGQKFLGKLSDDQTARILKMGCQRPRERKAIIDGVM 512

Query: 538  RGPVGPTSGNQGREFKLHVSREMTRLNGRILQPPKLKLGDGGHIRDLVPCRHDRQWNFLE 597
            RG VGPTSG+Q REFKL VSREMTRLNGR+L+PPKLKLGDGGH+RDL+P RHDRQWN L+
Sbjct: 513  RGAVGPTSGSQEREFKLDVSREMTRLNGRVLEPPKLKLGDGGHVRDLIPSRHDRQWNLLD 572

Query: 598  SHVFEGTRIERWALLSFGGSHDQKSAIPKFICQLSQRCEQLGIFLNKSTIISPQFEQTHV 657
            SHVFEGT IERWAL+SFGG+ DQKS IP+FI QLSQRCEQLGI LNK+TI+SPQFE   V
Sbjct: 573  SHVFEGTHIERWALISFGGTPDQKSNIPRFIIQLSQRCEQLGILLNKNTIMSPQFEPIQV 632

Query: 658  LNNVSLLESKLKKIHEAASNNLQLLICVMERKHKGYADLKRIAETSVGVVSQCCLYSNLG 717
            LNNVSLLESKLKKIH  A NNLQLL+C+MERKHKGYADLKRIAETS+GVVSQCCLY NLG
Sbjct: 633  LNNVSLLESKLKKIHRTALNNLQLLMCIMERKHKGYADLKRIAETSIGVVSQCCLYQNLG 692

Query: 718  KLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFFPDEPVIFMGADVTHPHPLDDFS 777
            KLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRL  PDEPVIFMGADVTHPHPLDDFS
Sbjct: 693  KLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLLRPDEPVIFMGADVTHPHPLDDFS 752

Query: 778  PSVAAVVGSMNWPAANKYASRMRSQTHRQEIIQDLGVMVGELLDDFYHELNKLPRRIIFF 837
            PS+AAVVGSMNWP+ANKY SRMRSQTHRQEIIQDLG MVGE+LDDFY ++++LP+RIIFF
Sbjct: 753  PSIAAVVGSMNWPSANKYVSRMRSQTHRQEIIQDLGAMVGEILDDFYQQVSQLPKRIIFF 812

Query: 838  RDGVSETQFYKVLQEELQSIREACSRFPGYSPPITFVVVQKRHHTRLFPYDNDPSSAHNQ 897
            RDGVSETQFYKVLQEELQ+IR ACSRFP Y PPITF VVQKRHHTRLFP +++PSS  NQ
Sbjct: 813  RDGVSETQFYKVLQEELQAIRVACSRFPSYRPPITFAVVQKRHHTRLFPNESNPSSIGNQ 872

Query: 898  SSDENIPPGTVVDTVITHPREFDFYLCSHWGVKGTSRPTHYHILWDDNKFTSDELQKLVY 957
             SD+NIPPGTVVD VITHPREFDFYLCSHWGVKGTSRPTHYH+LWDDN FTSDELQKLVY
Sbjct: 873  FSDDNIPPGTVVDAVITHPREFDFYLCSHWGVKGTSRPTHYHVLWDDNHFTSDELQKLVY 932

Query: 958  NLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLERSESATLMGSSSAICRAAPPKAAPLP 1017
            NLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLERSE   L  S+SA+ RAAPPK APLP
Sbjct: 933  NLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLERSEFTALARSTSALSRAAPPKTAPLP 992

Query: 1018 KLSENVKKLMFYC 1030
            KLSENVKKLMFYC
Sbjct: 993  KLSENVKKLMFYC 1005

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255562970|ref|XP_002522490.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] gi|223538375|gb|EEF39982.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225464073|ref|XP_002268673.1| PREDICTED: protein argonaute 7-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147801909|emb|CAN72762.1| hypothetical protein VITISV_012826 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356502577|ref|XP_003520095.1| PREDICTED: protein argonaute 7-like [Glycine max] Back     alignment and taxonomy information
>gi|356494838|ref|XP_003516290.1| PREDICTED: protein argonaute 7-like [Glycine max] Back     alignment and taxonomy information
>gi|225030814|gb|ACN79520.1| reduced leaflet 3 [Lotus japonicus] Back     alignment and taxonomy information
>gi|449434752|ref|XP_004135160.1| PREDICTED: protein argonaute 7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449478373|ref|XP_004155300.1| PREDICTED: LOW QUALITY PROTEIN: protein argonaute 7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224112177|ref|XP_002316108.1| argonaute protein group [Populus trichocarpa] gi|222865148|gb|EEF02279.1| argonaute protein group [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1030
UNIPROTKB|Q75HC21048 AGO7 "Protein argonaute 7" [Or 0.829 0.814 0.674 0.0
TAIR|locus:2007111990 AGO7 "ARGONAUTE7" [Arabidopsis 0.713 0.742 0.701 2.6e-285
UNIPROTKB|Q69VD5979 PHN1 "Protein argonaute PNH1" 0.804 0.846 0.408 1.4e-160
UNIPROTKB|Q851R21058 MEL1 "Protein argonaute MEL1" 0.812 0.791 0.391 2.6e-157
TAIR|locus:2170897988 AGO10 "ARGONAUTE 10" [Arabidop 0.804 0.839 0.389 1.7e-153
TAIR|locus:2057851997 AGO5 "ARGONAUTE 5" [Arabidopsi 0.811 0.838 0.378 6.2e-149
TAIR|locus:21975501194 AGO3 "ARGONAUTE 3" [Arabidopsi 0.718 0.619 0.372 1.6e-145
TAIR|locus:21975451014 AGO2 "argonaute 2" [Arabidopsi 0.681 0.692 0.377 1.5e-138
UNIPROTKB|B0JYP5860 EIF2C2 "Protein argonaute-2" [ 0.745 0.893 0.372 1.1e-137
UNIPROTKB|Q9UKV8859 EIF2C2 "Protein argonaute-2" [ 0.745 0.894 0.372 1.1e-137
UNIPROTKB|Q75HC2 AGO7 "Protein argonaute 7" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
 Score = 3115 (1101.6 bits), Expect = 0., P = 0.
 Identities = 584/866 (67%), Positives = 700/866 (80%)

Query:   165 ARRPDAGGVEGAVISLLANHFLVQLDPSQRIFHYNVEMSPSPSKEVARLIKQKLVEENSS 224
             ARRPD GGVEGA I L ANHFLVQ DP Q+IFHYNV++SP PSKE AR+IK+KLVEEN S
Sbjct:   195 ARRPDMGGVEGAEIPLSANHFLVQFDPGQKIFHYNVDISPRPSKETARMIKKKLVEENPS 254

Query:   225 MLSGAYPAFDGRKNIYSPVEFENDRLEFFVSLPIPTSKSVLPSGELKELIHKQHQLKLFR 284
             +LSG+ PAFDGRKN+YSPV F+ DR+EFFVSLP+  ++  +   +   ++ KQ +LK F+
Sbjct:   255 VLSGSQPAFDGRKNLYSPVRFQEDRVEFFVSLPVALARCSVVKEDTGHMLDKQ-KLKTFK 313

Query:   285 INIKLVSKYDGKELSRYLSKEDNDWIPLPQDYLHALDVVLRENPSEKCIPVGRSLYSSSM 344
             +N++LVSK  G++L++YL+ ED D IPLPQDYLHALDVVLRE   E  I VGRSLY+ SM
Sbjct:   314 VNVRLVSKLCGEDLNKYLN-EDKDGIPLPQDYLHALDVVLREGAMESSILVGRSLYARSM 372

Query:   345 XXXXXXXXXXXXLRGFFQSLRPTQQGLSLNVDSSVSAFHESVGVIPYLQKRLEFLKDLSQ 404
                         LRGFFQ LRPT+QGL+LNVD S+SAFHES G+I YLQKR +FLKDL Q
Sbjct:   373 GEARDIGGGAVGLRGFFQRLRPTKQGLALNVDLSLSAFHESTGIISYLQKRCDFLKDLPQ 432

Query:   405 RKTRGLSGDQKKEVERALKNIRVFVCHRETVQRYRVYGLTEEVTENLWFADRDGKNIRLL 464
             +KTR L+ ++ +EVE+ALKNIRVFVCHRET QRY V+ LT+E TENL F DR GK++ ++
Sbjct:   433 KKTRALAEEEHREVEKALKNIRVFVCHRETNQRYHVHSLTKETTENLKFRDRSGKDLMVV 492

Query:   465 SYFKDHYNYNIQFRNLPCLQISRSKPCYLPMELCMICEGQKFLGKLSDDQTARILKMGCQ 524
              YFK+HYN++IQFRNLPCLQI RSKPCY+PMELC++CEGQKFLGKLSD+QT++ILKMGC+
Sbjct:   493 DYFKEHYNHDIQFRNLPCLQIGRSKPCYVPMELCVVCEGQKFLGKLSDEQTSKILKMGCE 552

Query:   525 RPKERKAMIDGVMRGPVGPTSGNQGREFKLHVSREMTRLNGRILQPPKLKLGDGGHIRDL 584
             RP ERK +I GV++G     S     +F L VS+ MT+L+GR+L PPKLKLG  G I+D+
Sbjct:   553 RPSERKGIIKGVVKGAFHARSDTYADQFSLQVSKHMTKLSGRVLLPPKLKLGSSGRIKDI 612

Query:   585 VPCRHDRQWNFLESHVFEGTRIERWALLSFGGSHDQKSAIPKFICQLSQRCEQLGIFLNK 644
              P R DRQW+FL+SHV EG++I+ WAL+SFGG+ +Q   I KF+ QLS RCEQLGI LNK
Sbjct:   613 TPDRFDRQWSFLDSHVAEGSKIKSWALISFGGTPEQHFCITKFVNQLSNRCEQLGILLNK 672

Query:   645 STIISPQFEQTHVLNNVSLLESKLKKIHEAASNNLQLLICVMERKHKGYADLKRIAETSV 704
              TIISP FE+  +LNNV +LE KLKKI EAAS NLQLLICVMER+H+GYADLKRIAETS+
Sbjct:   673 KTIISPIFERIQLLNNVGILEGKLKKIQEAASGNLQLLICVMERRHQGYADLKRIAETSI 732

Query:   705 GVVSQCCLYSNLGKLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFFPDEPVIFMG 764
             GVV+QCCLYSNL KL+SQFL NLALKINAK+GGC +ALY+S P QIPR+F  +EPV+FMG
Sbjct:   733 GVVTQCCLYSNLSKLTSQFLTNLALKINAKLGGCNIALYSSFPCQIPRIFLSEEPVMFMG 792

Query:   765 ADVTHPHPLDDFSPSVAAVVGSMNWPAANKYASRMRSQTHRQEIIQDLGVMVGELLDDFY 824
             ADVTHPHPLDD SPSV AVV SMNWP+ANKY SRMRSQTHR+EII+ L VM GELL++F 
Sbjct:   793 ADVTHPHPLDDSSPSVVAVVASMNWPSANKYISRMRSQTHRKEIIEQLDVMAGELLEEFL 852

Query:   825 HELNKLPRRIIFFRDGVSETQFYKVLQEELQSIREACSRFPGYSPPITFVVVQKRHHTRL 884
              E+ KLP RIIFFRDGVSETQFYKVL+EE+ ++R  CSR+PGY P ITF+VVQKRHHTRL
Sbjct:   853 KEVGKLPSRIIFFRDGVSETQFYKVLKEEMHAVRTTCSRYPGYKPLITFIVVQKRHHTRL 912

Query:   885 FPYDNDPSSAHNQSSDENIPPGTVVDTVITHPREFDFYLCSHWGVKGTSRPTHYHILWDD 944
             F  + + SS+H   SD+NIPPGTVVDTVITHPREFDFYLCSHWG KGTSRPTHYH+LWD+
Sbjct:   913 FHRERNGSSSHY--SDQNIPPGTVVDTVITHPREFDFYLCSHWGTKGTSRPTHYHVLWDE 970

Query:   945 NKFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLERSESATLMGSSSA 1004
             N F SDE+Q+L++NLCYTF RCT+PVSLVPPAYYAHLAAYRGRLYLERS++         
Sbjct:   971 NNFRSDEVQQLIHNLCYTFARCTRPVSLVPPAYYAHLAAYRGRLYLERSDTT-------- 1022

Query:  1005 ICRXXXXXXXXXXXXSENVKKLMFYC 1030
             + R             +NVK+LMFYC
Sbjct:  1023 MYRVSPLQTVPLPKLRDNVKRLMFYC 1048
GO:0010492 "maintenance of shoot apical meristem identity" evidence=IMP
GO:0016246 "RNA interference" evidence=IMP
TAIR|locus:2007111 AGO7 "ARGONAUTE7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q69VD5 PHN1 "Protein argonaute PNH1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q851R2 MEL1 "Protein argonaute MEL1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2170897 AGO10 "ARGONAUTE 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057851 AGO5 "ARGONAUTE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197550 AGO3 "ARGONAUTE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197545 AGO2 "argonaute 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|B0JYP5 EIF2C2 "Protein argonaute-2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UKV8 EIF2C2 "Protein argonaute-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q75HC2AGO7_ORYSJNo assigned EC number0.69160.82910.8148yesno
Q9C793AGO7_ARATHNo assigned EC number0.72900.81840.8515yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AGO901
argonaute protein group (870 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1030
cd04657426 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain 0.0
PLN03202900 PLN03202, PLN03202, protein argonaute; Provisional 1e-151
smart00950301 smart00950, Piwi, This domain is found in the prot 1e-105
pfam02171296 pfam02171, Piwi, Piwi domain 1e-96
cd02826393 cd02826, Piwi-like, Piwi-like: PIWI domain 5e-73
cd04658448 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P 9e-70
pfam02170114 pfam02170, PAZ, PAZ domain 9e-29
cd02846114 cd02846, PAZ_argonaute_like, PAZ domain, argonaute 2e-26
pfam0869952 pfam08699, DUF1785, Domain of unknown function (DU 1e-18
smart00949138 smart00949, PAZ, This domain is named PAZ after th 9e-10
cd02825115 cd02825, PAZ, PAZ domain, named PAZ after the prot 7e-05
pfam14179110 pfam14179, YppG, YppG-like protein 5e-04
cd04659404 cd04659, Piwi_piwi-like_ProArk, Piwi_piwi-like_Pro 0.002
cd02845117 cd02845, PAZ_piwi_like, PAZ domain, Piwi_like subf 0.004
>gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information 
 Score =  556 bits (1435), Expect = 0.0
 Identities = 211/448 (47%), Positives = 275/448 (61%), Gaps = 32/448 (7%)

Query: 550 REFKLHVSREMTRLNGRILQPPKLKLGDGGHIRDLVPCRHDRQWNFLESHVFEGTRIERW 609
           +EF + VS+EM  + GR+L PPKLK GD       VP   +  WN       EG  I  W
Sbjct: 4   KEFGISVSKEMITVPGRVLPPPKLKYGDSSKT---VP-PRNGSWNLRGKKFLEGGPIRSW 59

Query: 610 ALLSFGGSHDQ---KSAIPKFICQLSQRCEQLGIFLNKSTIISPQFEQTHVLNNVSLLES 666
           A+L+F G       ++ +  F+ QL +     GI  N +T I+    +   L        
Sbjct: 60  AVLNFAGPRRSREERADLRNFVDQLVKTVIGAGI--NITTAIASVEGRVEEL-------- 109

Query: 667 KLKKIHEAASNNLQLLICVMERKH-KGYADLKRIAETSVGVVSQCCLYSNLGK-LSSQFL 724
              K+ +A     QL++ ++ +K    Y  +KR+A+T +G+ +QC L   + K  + Q+ 
Sbjct: 110 -FAKLKQAKGEGPQLVLVILPKKDSDIYGRIKRLADTELGIHTQCVLAKKVTKKGNPQYF 168

Query: 725 ANLALKINAKVGGCTVALYNSLPSQIPRLFFPDEPVIFMGADVTHPHPLDDF-SPSVAAV 783
           AN+ALKIN K+GG   +L         R     EP + +GADVTHP P D   +PS+AAV
Sbjct: 169 ANVALKINLKLGGINHSLEPD-----IRPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAV 223

Query: 784 VGSMNWPAANKYASRMRSQTHRQEIIQDLGVMVGELLDDFYHELNKLPRRIIFFRDGVSE 843
           V S++W  A +Y + +R Q+HRQEII DL  MV ELL  F     KLP RII++RDGVSE
Sbjct: 224 VASVDWHLA-QYPASVRLQSHRQEIIDDLESMVRELLRAFKKATGKLPERIIYYRDGVSE 282

Query: 844 TQFYKVLQEELQSIREACSRF-PGYSPPITFVVVQKRHHTRLFPYDNDPSSAHNQSSDEN 902
            QF +VL EEL +IR+AC++  PGY P ITF+VVQKRHHTR FP D D         + N
Sbjct: 283 GQFAQVLNEELPAIRKACAKLYPGYKPKITFIVVQKRHHTRFFPTDED----DADGKNGN 338

Query: 903 IPPGTVVDTVITHPREFDFYLCSHWGVKGTSRPTHYHILWDDNKFTSDELQKLVYNLCYT 962
           +PPGTVVD  ITHPREFDFYLCSH G++GT+RPTHYH+LWD+  FT+DELQ L YNLCYT
Sbjct: 339 VPPGTVVDRGITHPREFDFYLCSHAGIQGTARPTHYHVLWDEIGFTADELQTLTYNLCYT 398

Query: 963 FVRCTKPVSLVPPAYYAHLAAYRGRLYL 990
           + RCT+ VS+ PPAYYAHLAA R R YL
Sbjct: 399 YARCTRSVSIPPPAYYAHLAAARARCYL 426

Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. Length = 426
>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional Back     alignment and domain information
>gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives Back     alignment and domain information
>gnl|CDD|216915 pfam02171, Piwi, Piwi domain Back     alignment and domain information
>gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain Back     alignment and domain information
>gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>gnl|CDD|216914 pfam02170, PAZ, PAZ domain Back     alignment and domain information
>gnl|CDD|239212 cd02846, PAZ_argonaute_like, PAZ domain, argonaute_like subfamily Back     alignment and domain information
>gnl|CDD|219976 pfam08699, DUF1785, Domain of unknown function (DUF1785) Back     alignment and domain information
>gnl|CDD|198017 smart00949, PAZ, This domain is named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>gnl|CDD|239207 cd02825, PAZ, PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>gnl|CDD|222579 pfam14179, YppG, YppG-like protein Back     alignment and domain information
>gnl|CDD|240017 cd04659, Piwi_piwi-like_ProArk, Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria Back     alignment and domain information
>gnl|CDD|239211 cd02845, PAZ_piwi_like, PAZ domain, Piwi_like subfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1030
PLN03202900 protein argonaute; Provisional 100.0
KOG1041876 consensus Translation initiation factor 2C (eIF-2C 100.0
KOG1042845 consensus Germ-line stem cell division protein Hiw 100.0
cd04657426 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut 100.0
cd04658448 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain 100.0
cd02826393 Piwi-like Piwi-like: PIWI domain. Domain found in 100.0
PF02171302 Piwi: Piwi domain; InterPro: IPR003165 This domain 100.0
cd04659404 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI 100.0
PF02170135 PAZ: PAZ domain; InterPro: IPR003100 This domain i 99.87
cd02825115 PAZ PAZ domain, named PAZ after the proteins Piwi 99.78
cd02846114 PAZ_argonaute_like PAZ domain, argonaute_like subf 99.76
cd02845117 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In 99.72
PF0869952 DUF1785: Domain of unknown function (DUF1785); Int 99.47
cd02844135 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF ( 99.32
COG1431685 Argonaute homolog, implicated in RNA metabolism [T 99.27
cd02843122 PAZ_dicer_like PAZ domain, dicer_like subfamily. D 98.48
PF08459155 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; I 90.33
PF13032138 DUF3893: Domain of unknown function (DUF3893) 89.91
PRK11617224 endonuclease V; Provisional 88.6
cd06559208 Endonuclease_V Endonuclease_V, a DNA repair enzyme 83.2
>PLN03202 protein argonaute; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6.4e-164  Score=1523.42  Aligned_cols=830  Identities=33%  Similarity=0.590  Sum_probs=698.0

Q ss_pred             cccccCCCCCCCCCCceEEEEeeEEEEeeC-CCCcEEEEEEEECcC-----CCHHHHHHHHHHHHHHhhcccCCCceeec
Q 001684          161 ALVAARRPDAGGVEGAVISLLANHFLVQLD-PSQRIFHYNVEMSPS-----PSKEVARLIKQKLVEENSSMLSGAYPAFD  234 (1030)
Q Consensus       161 ~~~~p~RP~~Gt~~G~~I~L~tN~F~v~~~-~~~~iy~YdV~i~P~-----~~k~~~r~i~~~l~~~~~~~~~~~~~~yD  234 (1030)
                      ...++.|||||+ .|++|.|+||||+|.+. ++..||||||+|+|+     .+++.++.|+++++++.+..+.+..+|||
T Consensus        30 ~~~~~~RPg~Gt-~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~D  108 (900)
T PLN03202         30 KRLPMARRGFGS-KGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSDLAGKDFAYD  108 (900)
T ss_pred             ccccCCCCCCCC-CCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHHhhCCCceeec
Confidence            346889999999 99999999999999975 578899999999974     23566788888888775444655578999


Q ss_pred             CCceeeeccccCCCceEEEEEeccCCCCCC----CC--CCch--h--hhhhcccCCcEEEEEEEeeeeechHHHHHhhcc
Q 001684          235 GRKNIYSPVEFENDRLEFFVSLPIPTSKSV----LP--SGEL--K--ELIHKQHQLKLFRINIKLVSKYDGKELSRYLSK  304 (1030)
Q Consensus       235 G~~~LyS~~~L~~~~~~~~V~l~~~~~~~~----~~--~~~~--~--~~~~~~~~~~~~~V~Ik~v~~i~l~~L~~~l~~  304 (1030)
                      |+++|||+.+|+.+..++.|++.......+    ++  +++.  +  ...+...+++.|+|+|+++++|++.+|.+||.+
T Consensus       109 g~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~l~~  188 (900)
T PLN03202        109 GEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANALRG  188 (900)
T ss_pred             CccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHHHHcC
Confidence            999999999999866677787752100000    00  0000  0  000012357889999999999999999999998


Q ss_pred             CCCCCCCCchhHHHHHHHHHccCCCCC-cccccccccCCCCCCccccCCcEEEEeceeEeEeeeccceeeeeccccceee
Q 001684          305 EDNDWIPLPQDYLHALDVVLRENPSEK-CIPVGRSLYSSSMGGAKEIGGGAVGLRGFFQSLRPTQQGLSLNVDSSVSAFH  383 (1030)
Q Consensus       305 ~~~d~~~~~~e~iq~Lniilr~~~~~~-~~~vGrsfF~~~~~~~~~lg~Gle~w~Gf~~SvR~~~~~l~LniDvs~~aF~  383 (1030)
                      ...+   .+.++|||||+|||+.++.. ++.+||+||.+......++++|+|+|+||++|||+++++|+||||+++++|+
T Consensus       189 ~~~~---~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~  265 (900)
T PLN03202        189 QESE---NSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIV  265 (900)
T ss_pred             CCCC---CcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeeee
Confidence            7543   67899999999999998654 8899999998654445578999999999999999999999999999999999


Q ss_pred             ccCChHHHHHHHHhhhhhhhhhhcCCCChhhHHHHHHhcceeEEEEeeeccceeEEEeecccCCCccceeecCC------
Q 001684          384 ESVGVIPYLQKRLEFLKDLSQRKTRGLSGDQKKEVERALKNIRVFVCHRETVQRYRVYGLTEEVTENLWFADRD------  457 (1030)
Q Consensus       384 ~~~~l~d~l~~~l~~~~~~~~~~~r~l~~~~~~~l~~~LkGl~V~~~h~~~~k~~rI~gi~~~~a~~~~F~~~d------  457 (1030)
                      ++++|+|+|.++.+..         .....++.+++++|+|++|.++|.  +++|+|.||++..+++.+|+.++      
T Consensus       266 ~~~~l~~~l~~~~~~~---------~~~~~~~~~~~~~lkGl~V~t~~~--~k~yrI~~i~~~~a~~~~F~~~~~~~~~~  334 (900)
T PLN03202        266 QPGPVVDFLIANQNVR---------DPFQIDWSKAKRMLKNLRVKVSPS--NQEYKITGLSEKPCKEQTFSLKQRNGNGN  334 (900)
T ss_pred             cCCcHHHHHHHhcCcC---------CccchhHHHHHHHhcCCEEEEecC--CceEEEeeccCCCCcceEEEcccCCcccc
Confidence            9999999998865421         111234567999999999999995  47899999999999999997321      


Q ss_pred             ---CCceeHHHHHHhhcCcccccC-CCceEEec-CCCcccccccceeeccCccccCCCCHHHHHHHHHhccCCHHHHHHH
Q 001684          458 ---GKNIRLLSYFKDHYNYNIQFR-NLPCLQIS-RSKPCYLPMELCMICEGQKFLGKLSDDQTARILKMGCQRPKERKAM  532 (1030)
Q Consensus       458 ---G~~iSV~dYFk~~Yni~L~~p-~lPlv~vg-~~k~~ylP~Elc~I~~gQ~~~~kLs~~q~~~mik~a~~~P~~R~~~  532 (1030)
                         |++|||+|||+++||++|+|| ++|||++| ..+++|||||||.|+|||+++++|++.|+++||++|+.+|.+|.+.
T Consensus       335 ~~~~~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~  414 (900)
T PLN03202        335 EVETVEITVYDYFVKHRGIELRYSGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKV  414 (900)
T ss_pred             cCCcceEEHHHHHHHHcCccccCCCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHH
Confidence               358999999999999999996 99999999 5678999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCCCCCCCcccccceEEeccceEeeeEEecCCceecCCCCccccccCCcCCccccccccccccccccceeEEE
Q 001684          533 IDGVMRGPVGPTSGNQGREFKLHVSREMTRLNGRILQPPKLKLGDGGHIRDLVPCRHDRQWNFLESHVFEGTRIERWALL  612 (1030)
Q Consensus       533 I~~~~~~~~~~~~~~~l~~fGi~I~~~~~~V~gRvL~pP~I~yg~~~~~~~~~p~~~~G~Wnl~~~~f~~~~~l~~W~vl  612 (1030)
                      |.++++.+... .+++|++|||+|+.+|++|+||+|+||+|.|+++..   ..|.  +|+||+++.+|+.++.+++|+|+
T Consensus       415 i~~~~~~~~~~-~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~~---~~p~--~g~Wn~~~~kf~~~~~l~~W~vv  488 (900)
T PLN03202        415 LTDALKSSNYD-ADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGED---FFPR--NGRWNFNNKKLVEPTKIERWAVV  488 (900)
T ss_pred             HHHHHHHhCCC-CchHHHHCCcEecCCceEEeEEEcCCceeecCCCcc---cCCC--CCceecCCCEecCCCccceEEEE
Confidence            99988776553 678999999999999999999999999999987642   3566  89999999999999999999999


Q ss_pred             EeCCCccccccHHHHHHHHHHHHHHcCccccCCcccccccccccccCChhHHHHHHHHHHHHhcCCCcEEEEEEecC-Cc
Q 001684          613 SFGGSHDQKSAIPKFICQLSQRCEQLGIFLNKSTIISPQFEQTHVLNNVSLLESKLKKIHEAASNNLQLLICVMERK-HK  691 (1030)
Q Consensus       613 ~~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~~~le~~l~~i~~~~~~~~~lvlvIlp~~-~~  691 (1030)
                      ++.+.    ..+++|++.|.+.|+.+||.+..+..+.............+.++.+++.+.+.....++|||||||++ +.
T Consensus       489 ~~~~~----~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~qlv~vIlp~~~~~  564 (900)
T PLN03202        489 NFSAR----CDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLPGPPQFLLCILPERKNS  564 (900)
T ss_pred             EecCc----hhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhccCCCeEEEEEEcCCCCc
Confidence            88653    25899999999999999999986543211100000011235688888888876656789999999975 55


Q ss_pred             c-HHHHHHHHhhccCeeeEeEeeccccCcchHHHHHHHHHHHhhcCCceeeecCCCCCCCCCccCCCCCeEEEEEEecCC
Q 001684          692 G-YADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFFPDEPVIFMGADVTHP  770 (1030)
Q Consensus       692 ~-Y~~IK~~~~~~~GI~TQci~~~t~~k~~~q~~~Ni~lKINaKLGG~n~~l~~~~~~~ip~~~~~~~~tMiiG~DVsHp  770 (1030)
                      + |+.||++||++.||+||||...   +.++||++|||||||+||||+||.+..+.+..+|  ++.+.+|||||+||+||
T Consensus       565 ~~Y~~IK~~~~~~~gV~TQcv~~~---~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~--~~~~~~tMivG~DVtHp  639 (900)
T PLN03202        565 DIYGPWKKKNLSEFGIVTQCIAPT---RVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIP--LVSKVPTIILGMDVSHG  639 (900)
T ss_pred             chHHHHHHHHhhccCcccEEeCcc---ccchHHHHHHHHHHhhhhCCcceeecccccccCc--cccCCCeEEEEEEeecC
Confidence            6 9999999999999999999653   3478999999999999999999998654444567  55677999999999999


Q ss_pred             CCCCCCCCeEEEEEEeecCCCcceeeEEEEEecCceeeeecH---------hhHHHHHHHHHHHHc-CCCCcEEEEEeCC
Q 001684          771 HPLDDFSPSVAAVVGSMNWPAANKYASRMRSQTHRQEIIQDL---------GVMVGELLDDFYHEL-NKLPRRIIFFRDG  840 (1030)
Q Consensus       771 ~~~~~~~pSiaavVaS~d~~~~~ky~s~~~~Q~~~~Eii~~l---------~~~~~~~L~~f~~~~-~~lP~~IIiYRDG  840 (1030)
                      +++....|||||||||+|++.+++|.+.++.|.+++|+|++|         ++|+.++|+.|++.+ +.+|++|||||||
T Consensus       640 ~~g~~~~pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDG  719 (900)
T PLN03202        640 SPGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSSGKRKPEQIIIFRDG  719 (900)
T ss_pred             CCCCCCCCceEEEEeccCcccccceeeEEEecCCCceeeeehhccccccchHHHHHHHHHHHHHHcCCCCCceeEEEecC
Confidence            988655799999999999767899999999999999999986         789999999999865 6999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHHHHhhC-CCCCCCEEEEEEeeccccccccCCCCCCCCCCCCCCCCCCCeeeeccccccCCcc
Q 001684          841 VSETQFYKVLQEELQSIREACSRF-PGYSPPITFVVVQKRHHTRLFPYDNDPSSAHNQSSDENIPPGTVVDTVITHPREF  919 (1030)
Q Consensus       841 VSEgQ~~~Vl~~Ev~~Ik~a~~~~-~~~~Pkit~Ivv~Krh~tRff~~~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~  919 (1030)
                      ||||||.+|+++|+++|++||+++ ++|+|+||||||+||||+|||+.+          +.+||+||||||++||+|..|
T Consensus       720 VseGQ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~----------~~~N~~pGTvVD~~it~p~~~  789 (900)
T PLN03202        720 VSESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAG----------SPDNVPPGTVVDNKICHPRNN  789 (900)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccC----------CCCCCCCceEeccccccCCcc
Confidence            999999999999999999999999 789999999999999999999863          468999999999999999999


Q ss_pred             eEEEeecCCccccccceeEEEEeCCCCCCHHHHHHHHHHHhhcccccCCCccccccchhHHHHHHhcccccccCCccccc
Q 001684          920 DFYLCSHWGVKGTSRPTHYHILWDDNKFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLERSESATLM  999 (1030)
Q Consensus       920 dFyL~Sh~~~qGTarPthY~Vl~De~~~~~d~Lq~LTy~LC~~y~r~t~sVslPaP~yYA~~~a~R~r~yl~~~~~~~~~  999 (1030)
                      |||||||.++|||||||||+||+||+++++|+||+|||+|||+|+|||++|||||||||||++|+|||+||...+.++++
T Consensus       790 dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lty~lc~~y~~~t~~VsvpaP~yYAhlla~r~r~~l~~~~~~~~~  869 (900)
T PLN03202        790 DFYMCAHAGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGQFMKFEDMSETS  869 (900)
T ss_pred             eEEEecccccccCCcCceEEEEECCCCCCHHHHHHHHHHHhhhhcccCCceecchhHHHHHHHHHHhhhhccccCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999854332222


Q ss_pred             CCCcccccCCCCCCCCCccccccccCCeeeC
Q 001684         1000 GSSSAICRAAPPKAAPLPKLSENVKKLMFYC 1030 (1030)
Q Consensus      1000 ~~~~~~~~~~~~~~~~~~~l~~~~~~~M~y~ 1030 (1030)
                      ++.+++++....+...+.+||++++++||||
T Consensus       870 ~~~~~~~~~~~~~~~~~~~~h~~~~~~Mfy~  900 (900)
T PLN03202        870 SSHGGITSAGAVPVPELPRLHENVASSMFFC  900 (900)
T ss_pred             ccccccCCCCccccccccccchhhcCCeeeC
Confidence            2222222222222446788999999999998

>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>cd02826 Piwi-like Piwi-like: PIWI domain Back     alignment and domain information
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster [] Back     alignment and domain information
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria Back     alignment and domain information
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily Back     alignment and domain information
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily Back     alignment and domain information
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO Back     alignment and domain information
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily Back     alignment and domain information
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily Back     alignment and domain information
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products [] Back     alignment and domain information
>PF13032 DUF3893: Domain of unknown function (DUF3893) Back     alignment and domain information
>PRK11617 endonuclease V; Provisional Back     alignment and domain information
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1030
4ei1_A859 Crystal Structure Of Human Argonaute2 Length = 859 1e-143
4f3t_A861 Human Argonaute-2 - Mir-20a Complex Length = 861 1e-143
4f1n_A1046 Crystal Structure Of Kluyveromyces Polysporus Argon 5e-45
2yhb_A437 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 2e-44
2yha_A388 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 1e-25
4g0m_A150 Crystal Structure Of Arabidopsis Thaliana Ago2 Mid 1e-16
3vnb_A155 Structural Insights Into Small Rna Sorting And Mrna 4e-14
3vna_A154 Structural Insights Into Small Rna Sorting And Mrna 1e-13
4g0p_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 1e-13
4g0o_A139 Crystal Structure Of Arabidopsis Thaliana Ago5 Mid 2e-13
4g0x_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 2e-12
1r4k_A169 Solution Structure Of The Drosophila Argonaute 1 Pa 6e-11
1si2_A149 Crystal Structure Of The Paz Domain Of Human Eif2c1 4e-10
1si3_A149 Crystal Structure Of The Paz Domain Of Human Eif2c1 1e-09
3luc_A138 Crystal Structure Of Mid Domain From Hago2 Length = 3e-07
3luk_A138 Crystal Structure Of Mid Domain From Hago2 Length = 5e-07
1vyn_A143 Structure And Nucleic Acid Binding Of The Drosophil 1e-06
1r6z_P509 The Crystal Structure Of The Argonaute2 Paz Domain 4e-06
2xdy_A145 Crystal Structure Of The N. Crassa Qde-2 Ago Mid Do 7e-06
1t2r_A123 Structural Basis For 3' End Recognition Of Nucleic 2e-05
3mj0_A124 Crystal Structure Of Drosophia Ago-Paz Domain In Co 3e-05
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859 Back     alignment and structure 
Iteration: 1

 Score =  507 bits (1305), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 324/852 (38%), Positives = 472/852 (55%), Gaps = 62/852 (7%)
Query: 167  RPDAGGVEGAVISLLANHFLVQLDPSQRIFHYNVEMSPSPS-KEVARLIKQKLVEENSSM 225
            RPD G   G  I L AN F + + P   I+HY +++ P    + V R I + +V+   + 
Sbjct: 28   RPDFG-TSGRTIKLQANFFEMDI-PKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQ 85
Query: 226  LSG-AYPAFDGRKNIYS--PVEFENDRLEFFVSLPIPTSKSVLPSGELKELIHKQHQLKL 282
            + G   P FDGRKN+Y+  P+    D++E  V+LP          GE K+        ++
Sbjct: 86   IFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLP----------GEGKD--------RI 127
Query: 283  FRINIKLVSKYDGKELSRYLSKEDNDWIP-LPQDYLHALDVVLRENPSEKCIPVGRSLYS 341
            F+++IK VS    + L   LS      +P +P + + ALDVV+R  PS +  PVGRS ++
Sbjct: 128  FKVSIKWVSCVSLQALHDALSGR----LPSVPFETIQALDVVMRHLPSMRYTPVGRSFFT 183
Query: 342  SSMXXXXXXXXXXXXLRGFFQSLRPTQQGLSLNVDSSVSAFHESVGVIPYLQKRLEFLKD 401
            +S               GF QS+RP+   + LN+D S +AF+++  VI ++ + L+F   
Sbjct: 184  ASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSI 243
Query: 402  LSQRKTRGLSGDQKKEVERALKNIRVFVCHRETVQR-YRVYGLTEEVTENLWFA--DRDG 458
              Q+K   L+  Q+ +  + +K ++V + H   ++R YRV  +T     +  F      G
Sbjct: 244  EEQQKP--LTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESG 301
Query: 459  KNIR--LLSYFKDHYNYNIQFRNLPCLQISRS-KPCYLPMELCMICEGQKFLGKLSDDQT 515
            + +   +  YFKD +   +++ +LPCLQ+ +  K  YLP+E+C I  GQ+ + KL+D+QT
Sbjct: 302  QTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQT 361
Query: 516  ARILKMGCQRPKERKAMIDGVMRGPVGPTSGNQGREFKLHVSREMTRLNGRILQPPKLKL 575
            + +++   +   +R+  I  +MR      +    REF + V  EMT + GR+LQPP +  
Sbjct: 362  STMIRATARSAPDRQEEISKLMRS-ADFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILY 420
Query: 576  GDGGHIRDLVPCRHDRQWNFLESHVFEGTRIERWALLSFGGSHD-QKSAIPKFICQLSQR 634
            G G +     P +    W+        G  I+ WA+  F       +  +  F  QL + 
Sbjct: 421  G-GRNKAIATPVQG--VWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKI 477
Query: 635  CEQLGIFLNKSTIISPQF-EQTHVLNNVSLLESKLKKIHEAASNNLQLLICVMERKHKGY 693
                G+ +       P F +     ++V  +   LK  +      LQL++ ++  K   Y
Sbjct: 478  SRDAGMPIQGQ----PCFCKYAQGADSVEPMFRHLKNTYAG----LQLVVVILPGKTPVY 529
Query: 694  ADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRL 753
            A++KR+ +T +G+ +QC    N+ + + Q L+NL LKIN K+GG    L   LP   P +
Sbjct: 530  AEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNIL---LPQGRPPV 586
Query: 754  FFPDEPVIFMGADVTHPHPLDDFSPSVAAVVGSMNWPAANKYASRMRSQTHRQEIIQDLG 813
            F   +PVIF+GADVTHP   D   PS+AAVVGSM+    N+Y + +R Q HRQEIIQDL 
Sbjct: 587  F--QQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDLA 643
Query: 814  VMVGELLDDFYHELNKLPRRIIFFRDGVSETQFYKVLQEELQSIREACSRF-PGYSPPIT 872
             MV ELL  FY      P RIIF+RDGVSE QF +VL  EL +IREAC +    Y P IT
Sbjct: 644  AMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGIT 703
Query: 873  FVVVQKRHHTRLFPYDNDPSSAHNQSSDENIPPGTVVDTVITHPREFDFYLCSHWGVKGT 932
            F+VVQKRHHTRLF  D +           NIP GT VDT ITHP EFDFYLCSH G++GT
Sbjct: 704  FIVVQKRHHTRLFCTDKN----ERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGT 759
Query: 933  SRPTHYHILWDDNKFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLER 992
            SRP+HYH+LWDDN+F+SDELQ L Y LC+T+VRCT+ VS+  PAYYAHL A+R R +L  
Sbjct: 760  SRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVD 819
Query: 993  SESATLMGSSSA 1004
             E  +  GS ++
Sbjct: 820  KEHDSAEGSHTS 831
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861 Back     alignment and structure
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With A Guide Rna Length = 1046 Back     alignment and structure
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 437 Back     alignment and structure
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 388 Back     alignment and structure
>pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain Length = 150 Back     alignment and structure
>pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Domains Length = 155 Back     alignment and structure
>pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Mid Domains Length = 154 Back     alignment and structure
>pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain In Complex With Ump Length = 147 Back     alignment and structure
>pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain Length = 139 Back     alignment and structure
>pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain Length = 147 Back     alignment and structure
>pdb|1R4K|A Chain A, Solution Structure Of The Drosophila Argonaute 1 Paz Domain Length = 169 Back     alignment and structure
>pdb|1SI2|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Of Deoxynucleotide Overhang Length = 149 Back     alignment and structure
>pdb|1SI3|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Length = 149 Back     alignment and structure
>pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 Back     alignment and structure
>pdb|3LUK|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 Back     alignment and structure
>pdb|1R6Z|P Chain P, The Crystal Structure Of The Argonaute2 Paz Domain (as A Mbp Fusion) Length = 509 Back     alignment and structure
>pdb|2XDY|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid Domain Length = 145 Back     alignment and structure
>pdb|1T2R|A Chain A, Structural Basis For 3' End Recognition Of Nucleic Acids By The Drosophila Argonaute 2 Paz Domain Length = 123 Back     alignment and structure
>pdb|3MJ0|A Chain A, Crystal Structure Of Drosophia Ago-Paz Domain In Complex With 3'-End 2'-O-Methylated Rna Length = 124 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1030
4f3t_A861 Protein argonaute-2; hydrolase/gene regulation, RN 0.0
4f1n_A1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 0.0
2yhb_A437 QDE-2, post-transcriptional gene silencing protein 1e-123
3ho1_A685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 1e-99
1yvu_A706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 9e-99
2yha_A388 Post-transcriptional gene silencing protein QDE-2; 4e-95
1u04_A771 Argonaute, hypothetical protein PF0537; RNAI, sile 8e-59
2w42_A427 PIWI, putative uncharacterized protein; RNAI, RISC 2e-58
1vyn_A143 Argonaute2; nucleic acid binding, RNA interference 3e-31
4g0m_A150 Protein argonaute 2; MID domain, small RNA 5' nucl 4e-29
4g0o_A139 Protein argonaute 5; MID domain, small RNA 5' nucl 4e-27
4g0x_A147 Protein argonaute 1; MID domain, small RNA 5' nucl 5e-27
3mj0_A124 Protein argonaute-2; argonaut, PAZ domain, 3'-END 1e-26
3luc_A138 Protein argonaute-2; MID domain, ribonucleoprotein 7e-25
2xfm_A150 MIWI, PIWI-like protein 1; RNA-protein complex, di 4e-20
3o7v_X124 PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, 2e-18
3qir_A148 PIWI-like protein 2; structural genomics consortiu 5e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1r6z_P509 Chimera of maltose-binding periplasmic protein AN 1e-06
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 Back     alignment and structure
 Score =  697 bits (1799), Expect = 0.0
 Identities = 311/887 (35%), Positives = 465/887 (52%), Gaps = 60/887 (6%)

Query: 157  AKTQALVAARRPDAGGVEGAVISLLANHFLVQLDPSQRIFHYNVEMSPSPSKEVAR--LI 214
             +  A     RPD G   G  I L AN F + + P   I+HY +++ P          ++
Sbjct: 20   IQGYAFKPPPRPDFG-TSGRTIKLQANFFEMDI-PKIDIYHYELDIKPEKCPRRVNREIV 77

Query: 215  KQKLVEENSSMLSGAYPAFDGRKNIYSPVE--FENDRLEFFVSLPIPTSKSVLPSGELKE 272
            +  +    + +     P FDGRKN+Y+ +      D++E  V+LP               
Sbjct: 78   EHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKD---------- 127

Query: 273  LIHKQHQLKLFRINIKLVSKYDGKELSRYLSKEDNDWIPLPQDYLHALDVVLRENPSEKC 332
                    ++F+++IK VS    + L   LS        +P + + ALDVV+R  PS + 
Sbjct: 128  --------RIFKVSIKWVSCVSLQALHDALSGRLPS---VPFETIQALDVVMRHLPSMRY 176

Query: 333  IPVGRSLYSSSMGGAKEIGGGAVGLRGFFQSLRPTQQGLSLNVDSSVSAFHESVGVIPYL 392
             PVGRS +++S G +  +GGG     GF QS+RP+   + LN+D S +AF+++  VI ++
Sbjct: 177  TPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFV 236

Query: 393  QKRLEFLKDLSQRKTRGLSGDQKKEVERALKNIRVFVCHRETV-QRYRVYGLTEEVTENL 451
             + L+F     Q+  + L+  Q+ +  + +K ++V + H   + ++YRV  +T     + 
Sbjct: 237  CEVLDFKSIEEQQ--KPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQ 294

Query: 452  WFADRD----GKNIRLLSYFKDHYNYNIQFRNLPCLQI-SRSKPCYLPMELCMICEGQKF 506
             F  +          +  YFKD +   +++ +LPCLQ+    K  YLP+E+C I  GQ+ 
Sbjct: 295  TFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRC 354

Query: 507  LGKLSDDQTARILKMGCQRPKERKAMIDGVMRGPVGPTSGNQGREFKLHVSREMTRLNGR 566
            + KL+D+QT+ +++   +   +R+  I  +MR      +    REF + V  EMT + GR
Sbjct: 355  IKKLTDNQTSTMIRATARSAPDRQEEISKLMRS-ASFNTDPYVREFGIMVKDEMTDVTGR 413

Query: 567  ILQPPKLKLGDGGHIRDLVPCRHDRQWNFLESHVFEGTRIERWALLSFGG-SHDQKSAIP 625
            +LQPP +  G        +       W+        G  I+ WA+  F       +  + 
Sbjct: 414  VLQPPSILYGGRNKA---IATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLK 470

Query: 626  KFICQLSQRCEQLGIFLNKSTIISPQFEQTHVLNNVSLLESKLKKIHEAASNNLQLLICV 685
             F  QL +     G+       I  Q            +E   + +       LQL++ +
Sbjct: 471  SFTEQLRKISRDAGMP------IQGQPCFCKYAQGADSVEPMFRHLKNTY-AGLQLVVVI 523

Query: 686  MERKHKGYADLKRIAETSVGVVSQCCLYSNLGKLSSQFLANLALKINAKVGGCTVALYNS 745
            +  K   YA++KR+ +T +G+ +QC    N+ + + Q L+NL LKIN K+GG      N+
Sbjct: 524  LPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGV-----NN 578

Query: 746  LPSQIPRLFFPDEPVIFMGADVTHPHPLDDFSPSVAAVVGSMNWPAANKYASRMRSQTHR 805
            +     R     +PVIF+GADVTHP   D   PS+AAVVGSM+    N+Y + +R Q HR
Sbjct: 579  ILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHR 637

Query: 806  QEIIQDLGVMVGELLDDFYHELNKLPRRIIFFRDGVSETQFYKVLQEELQSIREACSRF- 864
            QEIIQDL  MV ELL  FY      P RIIF+RDGVSE QF +VL  EL +IREAC +  
Sbjct: 638  QEIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLE 697

Query: 865  PGYSPPITFVVVQKRHHTRLFPYDNDPSSAHNQSSDENIPPGTVVDTVITHPREFDFYLC 924
              Y P ITF+VVQKRHHTRLF  D +     +     NIP GT VDT ITHP EFDFYLC
Sbjct: 698  KDYQPGITFIVVQKRHHTRLFCTDKNERVGKSG----NIPAGTTVDTKITHPTEFDFYLC 753

Query: 925  SHWGVKGTSRPTHYHILWDDNKFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAY 984
            SH G++GTSRP+HYH+LWDDN+F+SDELQ L Y LC+T+VRCT+ VS+  PAYYAHL A+
Sbjct: 754  SHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAF 813

Query: 985  RGRLYLERSESATLMGSSSAIC--RAAPPKAAPLPKLSENVKKLMFY 1029
            R R +L   E  +  GS ++           A   ++ ++  + M++
Sbjct: 814  RARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYF 860
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 Back     alignment and structure
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Length = 437 Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Length = 685 Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Length = 706 Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Length = 388 Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Length = 771 Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Length = 427 Back     alignment and structure
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Length = 150 Back     alignment and structure
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Length = 139 Back     alignment and structure
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* Length = 147 Back     alignment and structure
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} PDB: 1t2r_A 1t2s_A Length = 124 Back     alignment and structure
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Length = 138 Back     alignment and structure
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Length = 150 Back     alignment and structure
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Length = 124 Back     alignment and structure
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Length = 148 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 Length = 509 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1030
d1yvua2392 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 1e-85
d1w9ha1316 c.55.3.10 (A:93-408) Hypothetical protein AF1318 { 2e-71
d1u04a2447 c.55.3.10 (A:324-770) Argonaute homologue PF0537 { 4e-60
d1si2a_126 b.34.14.1 (A:) Eukaryotic translation initiation f 1e-28
d1t2sa_123 b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila 4e-27
d1u04a1322 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Py 3e-04
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

 Score =  279 bits (716), Expect = 1e-85
 Identities = 59/422 (13%), Positives = 129/422 (30%), Gaps = 73/422 (17%)

Query: 584 LVPCRHDRQWNFLESHVFEGTRIERWALLSFGGSHDQKSAIPKFICQLSQRCEQLGIFLN 643
           L  CR   + + L   +   +  ++            +    +F+ +L    +  GI L 
Sbjct: 26  LELCRPFVKKDVLSVEIISVSVYKK-----------LEWRKEEFLKELINFLKNKGIKLK 74

Query: 644 KSTIISPQFEQTHVLNNVS-LLESKLKKIHEAASNNLQLLICVMERKHKG--------YA 694
                        +L       + KL  +     +   L+I  +E   K         Y 
Sbjct: 75  IKGKS-------LILAQTREEAKEKLIPVINKIKDV-DLVIVFLEEYPKVDPYKSFLLYD 126

Query: 695 DLKRIAETSVGVVSQCCLYSNLGKLSSQFLA-NLALKINAKVGGCTVALYNSLPSQIPRL 753
            +KR       + SQ  L   L   + +F+  N+A ++ AK G     L           
Sbjct: 127 FVKREL-LKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKEI-------- 177

Query: 754 FFPDEPVIFMGADVTHPHPLDDFSPSVAAVVGSMNWPAANKYASRMRSQTHRQEIIQDLG 813
               +   F+G D++          +VA      +     +Y          +++ +   
Sbjct: 178 --EGKVDAFVGIDISRITRDGKTVNAVAFTKIFNSKGELVRYYLT-SYPAFGEKLTEK-- 232

Query: 814 VMVGELLDDFYHELNKLPRRIIFFRDGVSETQFYKVLQEELQSIREACSRFPGYSPPITF 873
             +G++         K   +I+  RDG        + ++E+ + ++       Y   +  
Sbjct: 233 -AIGDVFSLLEKLGFKKGSKIVVHRDGR-------LYRDEVAAFKKYG---ELYGYSLEL 281

Query: 874 VVVQKRHHTRLFPYDNDPSSAHNQSSDENIPPGTVVDTVITHPREFDFYLCSHWGVKGTS 933
           + + KR++ R F              +E    G           +       +   +GT 
Sbjct: 282 LEIIKRNNPRFFS-------------NEKFIKGYFY----KLSEDSVILATYNQVYEGTH 324

Query: 934 RPTHYHILWDDNKFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLERS 993
           +P     ++ +     + L   + +L        +P+ L    +Y+          +E  
Sbjct: 325 QPIKVRKVYGELPV--EVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIEPI 382

Query: 994 ES 995
           + 
Sbjct: 383 KK 384
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 Back     information, alignment and structure
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 123 Back     information, alignment and structure
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 322 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1030
d1yvua2392 Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax 100.0
d1u04a2447 Argonaute homologue PF0537 {Pyrococcus furiosus [T 100.0
d1w9ha1316 Hypothetical protein AF1318 {Archaeoglobus fulgidu 100.0
d1u04a1322 Argonaute homologue PF0537 {Pyrococcus furiosus [T 100.0
d1si2a_126 Eukaryotic translation initiation factor 2C 1, EIF 99.96
d1t2sa_123 Argonaute 2 {Fruit fly (Drosophila melanogaster) [ 99.95
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=0  Score=502.27  Aligned_cols=338  Identities=16%  Similarity=0.152  Sum_probs=269.2

Q ss_pred             CCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             12113999948996665508899999999998709202578421464333323578137999999999983399739999
Q 001684          605 RIERWALLSFGGSHDQKSAIPKFICQLSQRCEQLGIFLNKSTIISPQFEQTHVLNNVSLLESKLKKIHEAASNNLQLLIC  684 (1030)
Q Consensus       605 ~i~~W~ii~~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~~~le~~l~~i~~~~~~~~~lvlv  684 (1030)
                      .+-.|.++.+.-....+..+++|++.|.+.|+..||++...+.. .....     .....+..+.+..+.. .++++++|
T Consensus        36 ~~~~~~~i~~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~-~~~~l~~v  108 (392)
T d1yvua2          36 DVLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKS-LILAQ-----TREEAKEKLIPVINKI-KDVDLVIV  108 (392)
T ss_dssp             SEEEEEEEEEEC-----CHHHHHHHHHHHHHHTTTCEEEEEEEE-EEECS-----STTHHHHHHHHHHTTT-SSCSEEEE
T ss_pred             CCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEECCCCCC-EEECC-----CCCCHHHHHHHHHHHC-CCCCEEEE
T ss_conf             63442478999963106679999999999998629264578867-13127-----7511599999998402-67778999


Q ss_pred             EEECCCC-------C-HHHHHHHHHHCCCEEEEEEEECCCCCCCHH-HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC
Q ss_conf             9806992-------1-899999875214702376740333575167-899999999851298013306889889997667
Q 001684          685 VMERKHK-------G-YADLKRIAETSVGVVSQCCLYSNLGKLSSQ-FLANLALKINAKVGGCTVALYNSLPSQIPRLFF  755 (1030)
Q Consensus       685 Ilp~~~~-------~-Y~~IK~~~~~~~GV~TQci~~~t~~k~~~q-~~~Ni~lKiNaKLGG~n~~l~~~~~~~ip~~~~  755 (1030)
                      |+++..+       + |..||++| ++.||+||||..+++.+.+.+ ++.||++|||+||||+||.|.+     ++    
T Consensus       109 i~~~~~~~~~~~~~~~Y~~IK~~~-~~~gIptQ~i~~~tl~~~~~~~~~~NIalqinaKlGGipw~l~~-----~~----  178 (392)
T d1yvua2         109 FLEEYPKVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKE-----IE----  178 (392)
T ss_dssp             EEC----------CHHHHHHHHHH-HHTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESC-----CT----
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHH-HCCCCCCEEECHHHCCCCCCHHHHHHHHHHHHHHHCCCCEECCC-----CC----
T ss_conf             976888866555404799999998-54996648988666168983589999999999984983468878-----89----


Q ss_pred             CCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEEEECCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             99993999998318999999998189999840587765023899991376110002765899999999998099995799
Q 001684          756 PDEPVIFMGADVTHPHPLDDFSPSVAAVVGSMNWPAANKYASRMRSQTHRQEIIQDLGVMVGELLDDFYHELNKLPRRII  835 (1030)
Q Consensus       756 ~~~~tmiiG~DVsHp~~~~~~~pSiaavVaS~d~~~~~ky~s~~~~Q~~~~E~i~~l~~~~~~~L~~f~~~~g~~P~~II  835 (1030)
                       ..+|||||+||+|++++.. .++++|++++.|......+......|..++|+   +.+++.++|+.|++.+|.+|++||
T Consensus       179 -~~~tmiIGiDv~h~~~~~~-~~~~v~~~~~~~~~g~~~~~~~~~~~~~~ee~---~~~~~~~~l~~~~~~~~~~P~rII  253 (392)
T d1yvua2         179 -GKVDAFVGIDISRITRDGK-TVNAVAFTKIFNSKGELVRYYLTSYPAFGEKL---TEKAIGDVFSLLEKLGFKKGSKIV  253 (392)
T ss_dssp             -TCCSEEEEECEEECCCSSS-CCCEEEEEEEECTTSCEEEEEEEEECSCTTHH---HHHHHHHHHHHHHHTTCCTTCEEE
T ss_pred             -CCCEEEEEEEEEECCCCCC-CCCEEEEEEEECCCCCEEEEEEEECCCCCHHH---HHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             -9975999999871588898-46389999998689977899988547760789---999999999999996499986699


Q ss_pred             EEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
Q ss_conf             98289892579999999999999998517999998999999633555444379999987788998999980100442236
Q 001684          836 FFRDGVSETQFYKVLQEELQSIREACSRFPGYSPPITFVVVQKRHHTRLFPYDNDPSSAHNQSSDENIPPGTVVDTVITH  915 (1030)
Q Consensus       836 iYRDGVSEgqf~~Vl~~Ei~~Ik~a~~~~~~~~Pkit~Ivv~Krh~tRff~~~~~~~~~~~~~~~~N~~pGTVVD~~It~  915 (1030)
                      |||||+++       ++|+++|++||.+   +.|+|++|+|+||||+|||+.+             |+++||++.    .
T Consensus       254 i~RdG~~~-------~~El~~i~~a~~~---~~pki~~IvV~Krh~~Rff~~~-------------~~~~Gt~v~----~  306 (392)
T d1yvua2         254 VHRDGRLY-------RDEVAAFKKYGEL---YGYSLELLEIIKRNNPRFFSNE-------------KFIKGYFYK----L  306 (392)
T ss_dssp             EEESSCCC-------HHHHHHHHHHHHH---HTCEEEEEEEECSSCCCEECSC-------------SCCTTEEEE----B
T ss_pred             EEECCCCC-------HHHHHHHHHHHHH---CCCCEEEEEEEECCCEEECCCC-------------CCCCCCEEE----C
T ss_conf             99588773-------7999999999986---4995899999815882656789-------------999998771----7


Q ss_pred             CCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             986408984307865544551699970799889889999999975213666898223430033999998600001347
Q 001684          916 PREFDFYLCSHWGVKGTSRPTHYHILWDDNKFTSDELQKLVYNLCYTFVRCTKPVSLVPPAYYAHLAAYRGRLYLERS  993 (1030)
Q Consensus       916 p~~~dFyL~Sh~~~qGTarPt~Y~Vl~de~~~~~d~Lq~lTy~LC~~y~r~t~sVslPaP~yYA~~~a~R~r~yl~~~  993 (1030)
                      +...+||++||.+.|||+||+||+|++||+  +.|+||++||.|||+|+||++++|+|+|+||||++|+|+|.++++.
T Consensus       307 ~~~~~~~~~s~~~~qGT~rP~~Y~vl~d~~--~~d~l~~lt~~Lc~l~~~~t~svslPapi~YA~~lA~~~r~~~~p~  382 (392)
T d1yvua2         307 SEDSVILATYNQVYEGTHQPIKVRKVYGEL--PVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIEPI  382 (392)
T ss_dssp             SSSEEEECCSCCCSTTCCCCEEEEEEECSS--CHHHHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHHHHTCSSCC
T ss_pred             CCCEEEEEECCCCCCCCCCCCEEEEECCCC--CHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHCCCCC
T ss_conf             989299997688578777885899988989--9899999999977512671899800779999999999975117865
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure