Citrus Sinensis ID: 001686

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------103
MLPGSNIEMLPNLEDGLRGQNGNLSLEDSLQTELELILQRQPDRQIVNRERDVNIYRSGSAPPTVEGSLNAVGSLFLRDNPGSICNTAAGGSGGNGDINGILSEDEIRSHPAYLSYYYSHENINPRLPPPLVSKEDWRVAQRFQGGGSSLGDIADWRKKGVNGGDRSSLFSMQPGISVLQAENDLMELRNAARRNLSRDASAEWLERGSDRLIGVPAAGLGSRRKSFADILQEGLDRPASLSGHLSRPASCNAYGEIVGTGIADAHRAGSCNGAESLEVLHSAAASPGLVRTKSHNRIPSHSFASAVGSSLSRSTTPEAQLVGRSSGSGLPPVGSRVGAVEKNGAVGSNVQNDIELADIAATLSGLSLSNIRHADEVSHVQSQLQLNPDNQSDFLYDTSNGHNQSMKQQFMDKSTADNLAFSTHYIDFTRKNGIVPNLNASAINSNGQVNILKRTSSPNLYSKMNSTGFGGSSRSVGRQQNANISSLDFTNVSGDYSVNQKLNSLVNHHFDTVGIGATRNLNGMVNQVALDFHSPPMDPRYAQYLQRTSDYATRSAASASDPFAARNHFGSSLGDSDGLQKAHLELLLAQQNQQHEMQLLGKSGGLFPGYYETQPYRLDMQYSGNTFANPVLPSVGSGSFPNERNSRFTSMMRSSMGGPMPWHLDAGINMEGRLSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIATGERRIGLSSSVSS
ccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccHHHHHcccHHHHHHcccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHcccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccHHHHHHcccHHHcHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHcHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHHHHHcc
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHcccHHHHHHEcccccccccccccccHHHHHHHHHHccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccHHccccccccccccccEEcccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccHHHccccccccccccccccccccccccHHHHHHHccccccccHHHHcccHHHHHccHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHHcEEccHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHcHHHHHHHHccccHHHHHHHccHHHcccccEEEHcHccc
mlpgsniemlpnledglrgqngnlslEDSLQTELELILQrqpdrqivnrerdvniyrsgsapptvegslnavgslflrdnpgsicntaaggsggngdingilsedeirshpaylsyyysheninprlppplvskedWRVAQRfqgggsslgdiadwrkkgvnggdrsslfsmqpgisvLQAENDLMELRNAARRNLSRDASAEWLERGsdrligvpaaglgsrrKSFADILQEgldrpaslsghlsrpascnayGEIVgtgiadahragscngaeSLEVLHSaaaspglvrtkshnripshsfasavgsslsrsttpeaqlvgrssgsglppvgsrvgavekngavgsnvqndIELADIAATLSGlslsnirhadevSHVQsqlqlnpdnqsdflydtsnghnqsmKQQFMDKSTADNLAFSTHYidftrkngivpnlnasainsngqvnilkrtsspnlyskmnstgfggssrsvgrqqnanissldftnvsgdysvnqKLNSLVNHHFDTVGIGATRNLNGMVNQValdfhsppmdpryaqylqrtsdyatrsaasasdpfaarnhfgsslgdsdgLQKAHLELLLAQQNQQHEMQLLGksgglfpgyyetqpyrldmqysgntfanpvlpsvgsgsfpnernsRFTSMMrssmggpmpwhldaginmegrlssslldefktnktrsfelsDIVDHVVEFSTDQYGSRFIQQKLEAATAeektrifpeiiphARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMkcvhdqngnHVIQKCIECIPQDRIQFIISSFYGQVVAlsthpygcrVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLehgkpherTTVITQLAGQIVRMSQQKFASNVVEKcltfgspeERQLLINEMlgstdeneplqammkdpfgnYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIATGerriglsssvss
MLPGSNIEMLPNLEDGLRGQNGNLSLEDSLQTELELIlqrqpdrqivnrERDVNiyrsgsapptvegSLNAVGSLFLRDNPGSICNtaaggsggnGDINGILSEDEIRSHPAYLSYYYSHENINPRLPPPLVSKEDWRVAQRFqgggsslgdiadWRKKGVNGGDRSSLFSMQPGISVLQAENDLMELRNAARRNLSRDASaewlergsdrligvpaaglgsrRKSFADILQEGLDRPASLSGHLSRPASCNAYGEIVGTGIADAHRAGSCNGAESLEVLHSAAASPGLVRTKSHNRIPSHSFasavgsslsrSTTPEAQlvgrssgsglppvGSRVGAVEKNGAVGSNVQNDIELADIAATLSGLSLSNIRHADEVSHVQSQLQLNPDNQSDFLYDTSNGHNQSMKQQFMDKSTADNLAFSTHYIDFTRKNGIVPNLNASAINSNGQVNILKRTSSPNLYSKMNSTGFGGSSRSVGRQQNANISSLDFTNVSGDYSVNQKLNSLVNHHFDTVGIGATRNLNGMVNQVALDFHSPPMDPRYAQYLQRTSDYATRSAASASDPFAARNHFGSSLGDSDGLQKAHLELLLAQQNQQHEMQLLGKSGGLFPGYYETQPYRLDMQYSGNTFANPVLPSVGSGSFPNERNSRFTSMMRSSMGGPMPWHLDAGINMEGRLSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVlkkytygkhivSRIEKLiatgerriglsssvss
MLPGSNIEMLPNLEDGLRGQNGNLSLEDSLQTELELILQRQPDRQIVNRERDVNIYRSGSAPPTVEGSLNAVGSLFLRDNPGSICNTAAggsggngdingiLSEDEIRSHPAYLSYYYSHENINPRLPPPLVSKEDWRVAQRFQGGGSSLGDIADWRKKGVNGGDRSSLFSMQPGISVLQAENDLMELRNAARRNLSRDASAEWLERGSDRLIGVPAAGLGSRRKSFADILQEGLDRPASLSGHLSRPASCNAYGEIVGTGIADAHRAGSCNGAESLEVLHSAAASPGLVRTKSHNRIPSHSFASAVGSSLSRSTTPEAQLVGRSSGSGLPPVGSRVGAVEKNGAVGSNVQNDIELADIAATLSGLSLSNIRHADEVSHVQSQLQLNPDNQSDFLYDTSNGHNQSMKQQFMDKSTADNLAFSTHYIDFTRKNGIVPNLNASAINSNGQVNILKRTSSPNLYSKMNSTGFGGSSRSVGRQQNANISSLDFTNVSGDYSVNQKLNSLVNHHFDTVGIGATRNLNGMVNQVALDFHSPPMDPRYAQYLQRTSDYATRSAASASDPFAARNHFGSSLGDSDGLQKAHLELLLAQQNQQHEMQLLGKSGGLFPGYYETQPYRLDMQYSGNTFANPVLPSVGSGSFPNERNSRFTsmmrssmggpmpWHLDAGINMEGRLSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIATGERRIGLSSSVSS
********************************************************************LNAVGSLFLRDNPGSICNTAAGG*GGNGDINGILSEDEIRSHPAYLSYYYSHENINPRLP*PLVSKEDWRVAQRFQGG***LGDIADWR******************************************************LIGVPA********************************SCNAYGEIVGTGIADAHRAGSC*******************************************************************************QNDIELADIAATLSGLSLS************************************************NLAFSTHYIDFTRKNGIVPNLNASAIN******************************************LDFTNVSGDYSVNQKLNSLVNHHFDTVGIGATRNLNGMVNQVALDFH***************************************************ELLL*********QLLGKSGGLFPGYYETQPYRLDMQYSGNTFAN**********************************L*****************F**NKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSP***QLLIN****************KDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIATGE***********
********************************ELEL******************************GSLNAVGSL******************************EIRSHPAYLSYYYSHENINPRLPP**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************T*KTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIATGERRIGLSSSVS*
MLPGSNIEMLPNLEDGLRGQNGNLSLEDSLQTELELILQRQPDRQIVNRERDVNIYRSGSAPPTVEGSLNAVGSLFLRDNPGSICNTAAGGSGGNGDINGILSEDEIRSHPAYLSYYYSHENINPRLPPPLVSKEDWRVAQRFQGGGSSLGDIADWRKKGVNGGDRSSLFSMQPGISVLQAENDLMELRNAARRNLSRDASAEWLERGSDRLIGVPAAGLGSRRKSFADILQEGLDRPASLSGHLSRPASCNAYGEIVGTGIADAHRAGSCNGAESLEVLHSAAASPGLVRTKSHNRIPSHSF**************************LPPVGSRVGAVEKNGAVGSNVQNDIELADIAATLSGLSLSNIRHADEVSHVQSQLQLNPDNQSDFLYDTSNGHNQSMKQQFMDKSTADNLAFSTHYIDFTRKNGIVPNLNASAINSNGQVNILKRTSSPNLYSKMNSTG*********RQQNANISSLDFTNVSGDYSVNQKLNSLVNHHFDTVGIGATRNLNGMVNQVALDFHSPPMDPRYAQYLQRTSD**********DPFAARNHFGSSLGDSDGLQKAHLELLLAQQNQQHEMQLLGKSGGLFPGYYETQPYRLDMQYSGNTFANPVLPSVGSGSFPNERNSRFTSMMRSSMGGPMPWHLDAGINMEGRLSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIATGERR*********
************************SLEDSLQTELELILQRQPDRQ***************APPTVEGSLNAVGSLFL************************LSEDEIRSHPAYLSYYYSHENINPRLPPPLVSKEDWRVAQRFQGG********************************************************************V*AA*LGSRRKSFADILQEGLDR******************************************************************************************************************************************************************************************************************QVNILKRTSSPNLYSKMNSTGFGGSSRSVGRQQNANISSLDFTNVSGDYSVNQKLNSLVNHHFDTVGIGATRNLNGMVNQVALDFHSPPMDPRYAQYLQRTSDYATRSAASASDPFAARNHFGSSLGDSDGLQKAHLELLLAQQNQQHEMQLLGKSGGLFPGYYETQPYRLDMQYSGNTFANPVLPSVGSGSFPNERNSRFTSMMRSSMGGPMPWHLDAGINMEGRLSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIATGERRIGLSS****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLPGSNIEMLPNLEDGLRGQNGNLSLEDSLQTELELILQRQPDRQIVNRERDVNIYRSGSAPPTVEGSLNAVGSLFLRDNPGSICNTAAGGSGGNGDINGILSEDEIRSHPAYLSYYYSHENINPRLPPPLVSKEDWRVAQRFQGGGSSLGDIADWRKKGVNGGDRSSLFSMQPGISVLQAENDLMELRNAARRNLSRDASAEWLERGSDRLIGVPAAGLGSRRKSFADILQEGLDRPASLSGHLSRPASCNAYGEIVGTGIADAHRAGSCNGAESLEVLHSAAASPGLVRTKSHNRIPSHSFASAVGSSLSRSTTPEAQLVGRSSGSGLPPVGSRVGAVEKNGAVGSNVQNDIELADIAATLSGLSLSNIRHADEVSHVQSQLQLNPDNQSDFLYDTSNGHNQSMKQQFMDKSTADNLAFSTHYIDFTRKNGIVPNLNASAINSNGQVNILKRTSSPNLYSKMNSTGFGGSSRSVGRQQNANISSLDFTNVSGDYSVNQKLNSLVNHHFDTVGIGATRNLNGMVNQVALDFHSPPMDPRYAQYLQRTSDYATRSAASASDPFAARNHFGSSLGDSDGLQKAHLELLLAQQNQQHEMQLLGKSGGLFPGYYETQPYRLDMQYSGNTFANPVLPSVGSGSFPNERNSRFTSMMRSSMGGPMPWHLDAGINMEGRLSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIATGERRIGLSSSVSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1029 2.2.26 [Sep-21-2011]
Q9SS471003 Pumilio homolog 4 OS=Arab yes no 0.954 0.979 0.546 0.0
Q9ZW07968 Pumilio homolog 1 OS=Arab no no 0.892 0.948 0.456 0.0
Q9ZW02964 Pumilio homolog 3 OS=Arab no no 0.893 0.953 0.456 0.0
Q9ZW06972 Pumilio homolog 2 OS=Arab no no 0.904 0.957 0.457 0.0
Q9LJX4961 Pumilio homolog 5 OS=Arab no no 0.393 0.421 0.551 1e-130
Q9C5E7861 Pumilio homolog 6, chloro no no 0.452 0.541 0.472 1e-119
Q8TB721066 Pumilio homolog 2 OS=Homo yes no 0.326 0.315 0.564 1e-114
Q80U581066 Pumilio homolog 2 OS=Mus yes no 0.326 0.315 0.564 1e-114
P258221533 Maternal protein pumilio yes no 0.324 0.217 0.566 1e-112
Q5R5X31186 Pumilio homolog 1 OS=Pong no no 0.326 0.283 0.556 1e-111
>sp|Q9SS47|PUM4_ARATH Pumilio homolog 4 OS=Arabidopsis thaliana GN=APUM4 PE=1 SV=2 Back     alignment and function desciption
 Score = 1036 bits (2679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/1046 (54%), Positives = 711/1046 (67%), Gaps = 64/1046 (6%)

Query: 1    MLPGSNIEMLPNLEDGLRGQNGNLSLEDSLQTELELILQRQPDRQIV--NRERDVNIYRS 58
            M+  S ++   NL    RG   N+ LED  Q ELE +LQ+  ++Q     RERD++++RS
Sbjct: 1    MVTNSYMDTRSNLTSVNRG--SNVDLEDRFQRELESLLQQHRNQQSFGRERERDIDVHRS 58

Query: 59   GSAPPTVEGSLNAVGSLFLRDNPGSICNTAAGGSGGNGDINGILSEDEIRSHPAYLSYYY 118
            GSAPPTVEG L A+ + +L +N     +     S    +   +LS+DE+R HP YLSYYY
Sbjct: 59   GSAPPTVEGLLRAMDNQYLNNNNSDHRDVGNISSITTSNGVELLSDDELRWHPEYLSYYY 118

Query: 119  SHENINPRLPPPLVSKEDWRVAQRFQGGGSSLGDIADWRKKGVNGGDRSSLFSMQPGISV 178
            S+E+ NPRLPPPL+S+EDWRVAQRF    S    + +WRKK V   + SSLFS+QPG+ V
Sbjct: 119  SNEHSNPRLPPPLLSREDWRVAQRFHNSESVFDPVGEWRKKTVEVDNSSSLFSVQPGVPV 178

Query: 179  LQAENDLMELRNAARRNLSRDASAEWLERGSDRLIGVPA-AGLGSRRKSFADILQEGLDR 237
             QAENDLMELRNA  +   R    + L++G + LIG+   +GLG RRKSFADILQEGL+R
Sbjct: 179  EQAENDLMELRNAVAQ--GRSQKVQRLDQGREDLIGLSGYSGLGPRRKSFADILQEGLER 236

Query: 238  PASLSGHLSRPASCNAYGEIVGTGIADAHRAGSCNGAESL-EVLHSAAASPGLVRTKSHN 296
             A+L   LSRPASCN + ++    +     AG  +   +  + LHS A +          
Sbjct: 237  DAALGSQLSRPASCNTFRDMKDAAVLSNFSAGGFDSPLAFHDSLHSTAKNS--------- 287

Query: 297  RIPSHSFASAVGSSLSRSTTPEAQLVGRSSGSGLPPVGSRVGAVEKNGAVGSNVQN--DI 354
              P+    S + S + R+ TP++ LVGRS+ SGLPP+G+RVG VEK    G+ +QN    
Sbjct: 288  --PNTMLGSTMSSPVPRNRTPDSHLVGRSTASGLPPIGTRVGPVEKKNTFGTAIQNCESY 345

Query: 355  ELADIAATLSGLSLSNIRHADEVSHVQSQLQLNPDNQSDFLYDTSNGHNQSMKQQFMDKS 414
              AD+A TLS L++S +    E +H+QSQLQ+  +NQSD +    NGH ++++QQ   + 
Sbjct: 346  TAADVADTLSRLNMSEMSQVKE-NHMQSQLQVELENQSDVMRYIPNGHKKALRQQNTAE- 403

Query: 415  TADNLAFSTHYIDFTRKNGIVPNLNASAINSNGQVNILKRTSSPNL------YSKMNSTG 468
            T D+L FS +Y   +   G   +L AS + S+GQVNI KRTSS         +S++ S G
Sbjct: 404  TKDHL-FSANYGGMS---GYGASLGASTVGSHGQVNIPKRTSSSASLYSTSDHSRLGSVG 459

Query: 469  FGGSSRSVGRQQNANISSLDFTNVSGDYSVNQKLNSLVNHHF----DTVGIGATRNLNGM 524
                +      +N NI+  DF+  +G Y    KLNSL  H+        G G  ++LN +
Sbjct: 460  LSDVN-----IRNGNINGTDFS-TAGGYMAKNKLNSLAEHYSAEGSHLTGDGDRQSLNRL 513

Query: 525  VNQVALDFHSPPMDPRYAQYLQRTSDYATRSAASASDPFAARNHFGSSLGDSDGLQKAHL 584
            +NQVA + HSP MDP Y+QYL   S     S A+  D    RN+FG+S GD+      +L
Sbjct: 514  INQVASELHSPVMDPHYSQYLHTAS-----STAAPIDHSLIRNNFGTSNGDT---ANEYL 565

Query: 585  ELLLAQQNQQHEMQLLGKSGGLFPGYYETQPYRLDMQYSGNTFANPVLPSVGSGSFPNER 644
             +LLAQ  QQ     LG        ++E+  Y L   Y GN   +P   S  S +F N R
Sbjct: 566  AMLLAQNRQQ-----LGNLNAANSRFFESPSYDLGNMYLGNHLPSP---SKNSRNFQNMR 617

Query: 645  NSRFTSMMRSSMGGPM-PWHLDAGINMEGRLSSSLLDEFKTNKTRSFELSDIVDHVVEFS 703
             S+  SMM+   GG     H+D G   E    +SLL+ FK NKTRS ELS+IV HV+EFS
Sbjct: 618  MSQSASMMKVPFGGLQGSSHVDIGSTAE----ASLLEGFKNNKTRSLELSEIVGHVIEFS 673

Query: 704  TDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQL 763
             DQYGSRFIQQKLE AT EEK  IFPEI+P+ RTLMTDVFGNYVIQKFFEHGT  QR +L
Sbjct: 674  MDQYGSRFIQQKLETATDEEKNAIFPEILPYGRTLMTDVFGNYVIQKFFEHGTTKQRKEL 733

Query: 764  ASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKC 823
            A Q+TGHVL LSLQMYGCRVIQKALEVV ++QQ +MV ELDGSVMKCVHDQNGNHVIQKC
Sbjct: 734  AEQVTGHVLALSLQMYGCRVIQKALEVVELEQQARMVKELDGSVMKCVHDQNGNHVIQKC 793

Query: 824  IECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNL 883
            IE +PQD IQFIISSFYG+V+ALSTHPYGCRVIQRVLEH DD  TQ+IIM+EIM  VC L
Sbjct: 794  IERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEEIMDSVCTL 853

Query: 884  AQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQL 943
            AQDQYGNYVIQH+++HGKPHER+ +I +LAGQIV+MSQQKFASNVVEKCLTFG PEERQ+
Sbjct: 854  AQDQYGNYVIQHIIQHGKPHERSEIINKLAGQIVKMSQQKFASNVVEKCLTFGGPEERQV 913

Query: 944  LINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYG 1003
            L+NEMLG TDENEPLQAMMKDPFGNYVVQKVLETCDDQSL LILSRI+VHLN LK+YTYG
Sbjct: 914  LVNEMLGYTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLALILSRIKVHLNALKRYTYG 973

Query: 1004 KHIVSRIEKLIATGERRIGLSSSVSS 1029
            KHIV+R+EKLI TGERRIGLSSS+++
Sbjct: 974  KHIVARVEKLITTGERRIGLSSSLAA 999
Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. Binds the APUM-binding elements (APBEs) in the 3'-UTR mRNA sequence of CLV1, PNH, WUS and FAS2.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9ZW07|PUM1_ARATH Pumilio homolog 1 OS=Arabidopsis thaliana GN=APUM1 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZW02|PUM3_ARATH Pumilio homolog 3 OS=Arabidopsis thaliana GN=APUM3 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2 OS=Arabidopsis thaliana GN=APUM2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LJX4|PUM5_ARATH Pumilio homolog 5 OS=Arabidopsis thaliana GN=APUM5 PE=1 SV=2 Back     alignment and function description
>sp|Q9C5E7|PUM6_ARATH Pumilio homolog 6, chloroplastic OS=Arabidopsis thaliana GN=APUM6 PE=1 SV=1 Back     alignment and function description
>sp|Q8TB72|PUM2_HUMAN Pumilio homolog 2 OS=Homo sapiens GN=PUM2 PE=1 SV=2 Back     alignment and function description
>sp|Q80U58|PUM2_MOUSE Pumilio homolog 2 OS=Mus musculus GN=Pum2 PE=1 SV=2 Back     alignment and function description
>sp|P25822|PUM_DROME Maternal protein pumilio OS=Drosophila melanogaster GN=pum PE=1 SV=2 Back     alignment and function description
>sp|Q5R5X3|PUM1_PONAB Pumilio homolog 1 OS=Pongo abelii GN=PUM1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1029
2555802191024 pumilio, putative [Ricinus communis] gi| 0.966 0.971 0.676 0.0
2254489921026 PREDICTED: pumilio homolog 4 [Vitis vini 0.982 0.985 0.659 0.0
224097831999 predicted protein [Populus trichocarpa] 0.956 0.984 0.633 0.0
224113073998 predicted protein [Populus trichocarpa] 0.940 0.969 0.630 0.0
356533951983 PREDICTED: pumilio homolog 4-like [Glyci 0.934 0.978 0.607 0.0
3565746191000 PREDICTED: pumilio homolog 4-like [Glyci 0.932 0.96 0.602 0.0
357443169 1176 60S ribosomal protein L4 [Medicago trunc 0.912 0.798 0.594 0.0
449487299997 PREDICTED: pumilio homolog 4-like [Cucum 0.945 0.975 0.602 0.0
449449485996 PREDICTED: pumilio homolog 4-like [Cucum 0.945 0.976 0.601 0.0
223309601003 protein pumilio 4 [Arabidopsis thaliana] 0.954 0.979 0.546 0.0
>gi|255580219|ref|XP_002530940.1| pumilio, putative [Ricinus communis] gi|223529499|gb|EEF31455.1| pumilio, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1342 bits (3472), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 697/1031 (67%), Positives = 806/1031 (78%), Gaps = 36/1031 (3%)

Query: 1    MLPGSNIEMLPNLEDGLRGQNGNLSLEDSLQTELELILQRQPDRQIVNRERDVNIYRSGS 60
            M+ GSNI+ML +L+D L+  NGNL  EDS Q+ELE+ILQ Q ++  ++RERD+NIYRSGS
Sbjct: 1    MVTGSNIDMLLSLDDHLQRPNGNL--EDSFQSELEMILQAQRNQHYIDRERDLNIYRSGS 58

Query: 61   APPTVEGSLNAVGSLFLRDNPGSICNTAAGGSGGNGDINGILSEDEIRSHPAYLSYYYSH 120
            APPTVEGSL+AVGSLF   N   + + +            +LS+DEIRSHPAYLSYYYSH
Sbjct: 59   APPTVEGSLSAVGSLFRNPNFSDVSSISNSSRSNT-----VLSDDEIRSHPAYLSYYYSH 113

Query: 121  ENINPRLPPPLVSKEDWRVAQRFQGGGSSLGDIADWRKKG-VNGGDRSSLFSMQPGISVL 179
            +NINPRLPPPL+SKEDWRVAQRFQ  G  LGDI D RKK  V+ GD SSLFS+QP +S  
Sbjct: 114  DNINPRLPPPLLSKEDWRVAQRFQASGPLLGDIGDLRKKKFVDEGDGSSLFSLQPRLSAQ 173

Query: 180  QAENDLMELRNAARRNLSRDASAEWLERGSDRLIGVPAAGLGSRRKSFADILQEGLDRPA 239
            + +NDLM +RN  R N S    AEWL+RGS    G+ +AGLG+RRKSFADILQEGLDRPA
Sbjct: 174  KLDNDLMGIRNV-RNNFSMQNPAEWLDRGSGDSNGLQSAGLGARRKSFADILQEGLDRPA 232

Query: 240  SLSGHLSRPASCNAYGEIVGT-GIADAHRAGSCNGAESLEVLHSAAASPGLVRTKSHNRI 298
            SLSGHLSRPAS NA+G+++GT GI+D+   G   G ESL+ L S +ASPGLV  KSH   
Sbjct: 233  SLSGHLSRPASHNAFGDLLGTTGISDSCPVGFAGGLESLDGLRSGSASPGLVGVKSHGTT 292

Query: 299  PSHSFASAVGSSLSRSTTPEAQLVGRSSGSGLPPVGSRVGAVEKNGAVGSNVQND----- 353
             SHSFASA+GSSLSRSTTPE QLVGR   SGLPPVGS+V  +EK  AVGS  QN      
Sbjct: 293  VSHSFASAIGSSLSRSTTPEQQLVGRCPSSGLPPVGSKVAFLEKKNAVGSTAQNGHLSGI 352

Query: 354  IELADIAATLSGLSLSNIRHADEVSHVQSQLQLNPDNQSDFLYDTSNGHNQSMKQQFMDK 413
             EL +I ATLSGL+LS +RH ++ S ++       DNQ+DFL++TS+G+N  ++QQ  DK
Sbjct: 353  TELGEITATLSGLNLSKLRHPEQDSLIEL------DNQADFLFNTSDGYNH-LQQQLRDK 405

Query: 414  STADNLAFSTHYIDFTRKNGIVPNLNASAINSNGQVNILKRTSS-PNLYSKMNSTGFGGS 472
            S A+N +FS  YID   KNG +PNLNAS  N+NG+V+I KRTSS  NL+SK+NS+G GG 
Sbjct: 406  SNAENFSFSASYIDVAMKNGAMPNLNASEFNTNGEVSIPKRTSSFTNLHSKLNSSGLGGL 465

Query: 473  SRSVGRQQNANISSLDFTNVS-GDYSVNQKLNSLVNHHFDTV----GIGATRNLNGMVNQ 527
             RS G  QNANI S++F + S G Y+ NQKL+SL+ +H D      G G   +LN   +Q
Sbjct: 466  QRSNGHLQNANIPSMNFVSHSPGAYTSNQKLDSLLKNHLDAGSALGGNGVGHSLNRAGDQ 525

Query: 528  VALDFHSPPMDPRYAQYLQRTSDYATRSAASASDPFAARNHFGSSLGDSDGLQKAHLELL 587
               +FHS  MD RYAQYL+RTSDY TR+          RN FG S GD D +QKA+LE L
Sbjct: 526  AGPEFHSQVMDSRYAQYLRRTSDYETRTNGQL------RNFFGISHGDLDEVQKAYLEAL 579

Query: 588  LAQQNQQHEMQLLGKSGGLFPGYYETQPYRLDMQYSGNTFANPVLPSVGSGSFPNERNSR 647
            LAQQNQQ+E  LL KSG +  GY+    Y L M Y G + AN VLPSVGSGSF NE+ + 
Sbjct: 580  LAQQNQQYE-PLLVKSGSMNQGYHRNSSYGLGMPYLGTSMANSVLPSVGSGSFQNEQVAH 638

Query: 648  FTSMMRSSMGGPM-PWHLDAGINMEGRLSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQ 706
            FTS +R+SMGG +  WH D G N+E R  SSLLDEFK NKTRSFELSDIV+HVVEFSTDQ
Sbjct: 639  FTSTVRNSMGGSIGSWHPDVGSNIERRYVSSLLDEFKNNKTRSFELSDIVEHVVEFSTDQ 698

Query: 707  YGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQ 766
            YGSRFIQQKLE ATAEEK +IFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQR +LA+Q
Sbjct: 699  YGSRFIQQKLEIATAEEKNKIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRTELANQ 758

Query: 767  LTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIEC 826
            LT HVL LSLQMYGCRVIQKALEVV VDQQT+MVAELDGS+MKCV DQNGNHVIQKCIEC
Sbjct: 759  LTAHVLPLSLQMYGCRVIQKALEVVGVDQQTEMVAELDGSIMKCVRDQNGNHVIQKCIEC 818

Query: 827  IPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQD 886
            +P+DRIQ IISSFYGQVVALSTHPYGCRVIQRVLEHC+  +TQQIIMDEIMQ VC LAQD
Sbjct: 819  VPEDRIQSIISSFYGQVVALSTHPYGCRVIQRVLEHCESIDTQQIIMDEIMQSVCVLAQD 878

Query: 887  QYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLIN 946
            QYGNYVIQHVLEHGKPHER+ +I +LAGQIV+MSQQKFASNVVEKCL FG PEERQ+L+N
Sbjct: 879  QYGNYVIQHVLEHGKPHERSAIICKLAGQIVKMSQQKFASNVVEKCLIFGGPEERQILVN 938

Query: 947  EMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHI 1006
            EMLGSTDENEPLQ MMKDPFGNYVVQKVLETCDD+SLELILSRI++HLN LK+YTYGKHI
Sbjct: 939  EMLGSTDENEPLQVMMKDPFGNYVVQKVLETCDDRSLELILSRIKIHLNALKRYTYGKHI 998

Query: 1007 VSRIEKLIATG 1017
            VSR+EKLI TG
Sbjct: 999  VSRVEKLITTG 1009

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225448992|ref|XP_002273503.1| PREDICTED: pumilio homolog 4 [Vitis vinifera] gi|296085990|emb|CBI31431.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224097831|ref|XP_002311080.1| predicted protein [Populus trichocarpa] gi|222850900|gb|EEE88447.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224113073|ref|XP_002316382.1| predicted protein [Populus trichocarpa] gi|222865422|gb|EEF02553.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356533951|ref|XP_003535521.1| PREDICTED: pumilio homolog 4-like [Glycine max] Back     alignment and taxonomy information
>gi|356574619|ref|XP_003555443.1| PREDICTED: pumilio homolog 4-like [Glycine max] Back     alignment and taxonomy information
>gi|357443169|ref|XP_003591862.1| 60S ribosomal protein L4 [Medicago truncatula] gi|355480910|gb|AES62113.1| 60S ribosomal protein L4 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449487299|ref|XP_004157558.1| PREDICTED: pumilio homolog 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449449485|ref|XP_004142495.1| PREDICTED: pumilio homolog 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|22330960|ref|NP_187647.2| protein pumilio 4 [Arabidopsis thaliana] gi|313471414|sp|Q9SS47.2|PUM4_ARATH RecName: Full=Pumilio homolog 4; Short=APUM-4; Short=AtPUM4 gi|332641375|gb|AEE74896.1| protein pumilio 4 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1029
TAIR|locus:2043187972 PUM2 "pumilio 2" [Arabidopsis 0.677 0.717 0.491 3.9e-203
TAIR|locus:2043047964 PUM3 "pumilio 3" [Arabidopsis 0.680 0.726 0.487 5.4e-195
TAIR|locus:20763241003 PUM4 "pumilio 4" [Arabidopsis 0.563 0.578 0.605 2.8e-176
TAIR|locus:2043182968 PUM1 "pumilio 1" [Arabidopsis 0.674 0.716 0.494 8.7e-166
TAIR|locus:2087560961 PUM5 "pumilio 5" [Arabidopsis 0.452 0.484 0.497 1.2e-138
TAIR|locus:2117552861 PUM6 "pumilio 6" [Arabidopsis 0.325 0.389 0.599 7.3e-117
UNIPROTKB|E1BWC01062 PUM2 "Uncharacterized protein" 0.336 0.325 0.554 6.4e-110
UNIPROTKB|F1NV231061 PUM2 "Uncharacterized protein" 0.336 0.326 0.554 6.4e-110
UNIPROTKB|F1N2B81069 PUM2 "Uncharacterized protein" 0.326 0.314 0.568 1e-107
UNIPROTKB|F1SCU61064 PUM2 "Uncharacterized protein" 0.326 0.315 0.568 1.3e-107
TAIR|locus:2043187 PUM2 "pumilio 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1591 (565.1 bits), Expect = 3.9e-203, Sum P(2) = 3.9e-203
 Identities = 366/745 (49%), Positives = 471/745 (63%)

Query:   299 PS-HSFASAVGSSLSRSTTPEAQLVGRSSGSGLPPVGS-RVGAVEKNGAVGSNVQND--I 354
             PS +S+A+ +GSSLSR+ TP+ Q + R     L P+GS RV + +K      +  N    
Sbjct:   251 PSPYSYAAVLGSSLSRNGTPDPQAIARVPSPCLTPIGSGRVSSNDKRNTSNQSPFNGGLN 310

Query:   355 ELADIAATLSGLSLSNIRHADEVSHVQSQLQLNPDNQSDFLYDTSNGHNQSMKQQFMDKS 414
             E +D+   LSG++LS     DE    + Q + + +   ++++    GHN+  +  F +KS
Sbjct:   311 ESSDLVNALSGMNLSGSGGLDE----RGQAEQDVEKVRNYMFGLQGGHNEVNQHGFPNKS 366

Query:   415 TADNLAFSTHYIDFTRKNGIVPNLNASAINSNGQVNI-LKRTSSPNLYSKMNSTGFGGSS 473
               D    +T  +    +N  +     S  N  G V    +   SPN Y  +N+ G   + 
Sbjct:   367 --DQAQKATGLL----RNSQLRGAQGSTYNDGGGVATQYQHLDSPN-YC-LNNYGLNPAV 418

Query:   474 RSV-GRQQNANISSLDFTNVSGDYSVN-QKLNS-LVNHHFDTVG--IGATRNLNGMVNQV 528
              S+   Q   N  S  + N S   ++    ++S L    + + G  +  +RNL    N++
Sbjct:   419 ASMMANQLGTNNYSPVYENASAASAMGFSGMDSRLHGGGYVSSGQNLSESRNLGRFSNRM 478

Query:   529 ---ALDFHSPPMDPRYAQYLQRTSDYATRSAASASDPFAARNHFGSSLGDSDGLQKAHLE 585
                     S   DP Y QY    +D    S    +DP    N  G+S  +   LQ+A+L 
Sbjct:   479 MGGGTGLQSHMADPMYHQY----AD----SLDLLNDPSMDVNFMGNSYMNMLELQRAYL- 529

Query:   586 LLLAQQNQQHEMQLLGKSGGLFPGYYETQPYRLDMQYSGNTFANPVLP-SVGSGSFPNER 644
                  Q  Q+ +    KSG   P  +          Y G+  A+ +LP S+ S   P  R
Sbjct:   530 ---GAQKSQYGVPY--KSGS--PNSHTDYGSPTFGSYPGSPLAHHLLPNSLVSPCSPMRR 582

Query:   645 ---NSRF-TXXXXXXXXXXXXWHLDAGINMEGRLSSSLLDEFKTNKTRSFELSDIVDHVV 700
                N R+ +            WH+DA ++ EG   SS+L+EFK+NKTR FEL++I  HVV
Sbjct:   583 GEVNMRYPSATRNYAGGVMGSWHMDASLD-EG-FGSSMLEEFKSNKTRGFELAEIAGHVV 640

Query:   701 EFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQR 760
             EFS+DQYGSRFIQQKLE AT++EK  ++ EI+PHA  LMTDVFGNYVIQKFFEHG   QR
Sbjct:   641 EFSSDQYGSRFIQQKLETATSDEKNMVYEEIMPHALALMTDVFGNYVIQKFFEHGLPPQR 700

Query:   761 AQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVI 820
              +LA +L  +VL LSLQMYGCRVIQKA+EVV +DQ+ +MV ELDG VM+CV DQNGNHV+
Sbjct:   701 RELADKLFDNVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGNHVV 760

Query:   821 QKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHV 880
             QKCIEC+P++ I+FIIS+F+G VV LSTHPYGCRVIQRVLEHC D +TQ  +MDEIM  +
Sbjct:   761 QKCIECVPEENIEFIISTFFGNVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMDEIMSTI 820

Query:   881 CNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEE 940
               LAQDQYGNYVIQHVLEHGKP ERT +I +LAG+IV+MSQQKFASNVVEKCLTFG PEE
Sbjct:   821 SMLAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEE 880

Query:   941 RQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKY 1000
             R+ L+NEMLG+TDENEPLQAMMKD F NYVVQKVLETCDDQ  ELIL RI+VHLN LKKY
Sbjct:   881 REFLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILGRIKVHLNALKKY 940

Query:  1001 TYGKHIVSRIEKLIATGERRIGLSS 1025
             TYGKHIV+R+EKL+A GERR+ L S
Sbjct:   941 TYGKHIVARVEKLVAAGERRMALQS 965
GO:0003723 "RNA binding" evidence=IEA;ISS;IDA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0003729 "mRNA binding" evidence=IPI
GO:0003730 "mRNA 3'-UTR binding" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2043047 PUM3 "pumilio 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076324 PUM4 "pumilio 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043182 PUM1 "pumilio 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087560 PUM5 "pumilio 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117552 PUM6 "pumilio 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1BWC0 PUM2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NV23 PUM2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1N2B8 PUM2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SCU6 PUM2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SS47PUM4_ARATHNo assigned EC number0.54680.95430.9790yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_VIII000111
hypothetical protein (999 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1029
cd07920322 cd07920, Pumilio, Pumilio-family RNA binding domai 1e-173
COG5099777 COG5099, COG5099, RNA-binding protein of the Puf f 1e-80
cd07920322 cd07920, Pumilio, Pumilio-family RNA binding domai 4e-72
pfam07990365 pfam07990, NABP, Nucleic acid binding protein NABP 2e-70
smart0002536 smart00025, Pumilio, Pumilio-like repeats 1e-08
smart0002536 smart00025, Pumilio, Pumilio-like repeats 3e-07
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 3e-07
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 3e-06
smart0002536 smart00025, Pumilio, Pumilio-like repeats 5e-06
smart0002536 smart00025, Pumilio, Pumilio-like repeats 5e-06
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 5e-06
smart0002536 smart00025, Pumilio, Pumilio-like repeats 6e-06
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 9e-06
smart0002536 smart00025, Pumilio, Pumilio-like repeats 1e-05
smart0002536 smart00025, Pumilio, Pumilio-like repeats 3e-05
smart0002536 smart00025, Pumilio, Pumilio-like repeats 4e-05
COG5099 777 COG5099, COG5099, RNA-binding protein of the Puf f 1e-04
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 2e-04
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 4e-04
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 0.001
>gnl|CDD|153420 cd07920, Pumilio, Pumilio-family RNA binding domain Back     alignment and domain information 
 Score =  507 bits (1307), Expect = e-173
 Identities = 183/323 (56%), Positives = 233/323 (72%), Gaps = 2/323 (0%)

Query: 689  SFELSDI-VDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYV 747
            S  L DI   H+VEF+ DQ+GSRF+QQKLE AT EEK  IF EI+PH   LM D FGNYV
Sbjct: 1    SLTLQDIKAGHIVEFAKDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYV 60

Query: 748  IQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSV 807
            IQK FEHGTE QR QL  ++ GHV+RLSL MYGCRVIQK LE +  +Q + +V EL G V
Sbjct: 61   IQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCRVIQKLLESISEEQISLLVKELRGHV 120

Query: 808  MKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDAN 867
            ++ V DQNGNHVIQKCIE  P + +QFII +F G  VALSTHPYGCRVIQR LEHC +  
Sbjct: 121  VELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGCRVIQRCLEHCSEEQ 180

Query: 868  TQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASN 927
             + ++ +EI++H   L QDQ+GNYV+QHVLE G P + + +I +L G IV++S  KFASN
Sbjct: 181  REPLL-EEILEHALELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASN 239

Query: 928  VVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELIL 987
            VVEKCL   S EER+L+I+E+L S +E   L  +MKD +GNYV+Q  L+   ++  EL++
Sbjct: 240  VVEKCLKHASKEERELIIDEILASGNETSALDTLMKDQYGNYVIQTALDVAKEEQRELLV 299

Query: 988  SRIRVHLNVLKKYTYGKHIVSRI 1010
              IR HL  L+K  YGKHI++++
Sbjct: 300  EAIRPHLPSLRKSPYGKHILAKL 322

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canonical) repeats. Length = 322
>gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|153420 cd07920, Pumilio, Pumilio-family RNA binding domain Back     alignment and domain information
>gnl|CDD|219685 pfam07990, NABP, Nucleic acid binding protein NABP Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1029
PF07990385 NABP: Nucleic acid binding protein NABP; InterPro: 100.0
KOG1488503 consensus Translational repressor Pumilio/PUF3 and 100.0
cd07920322 Pumilio Pumilio-family RNA binding domain. Puf rep 100.0
COG5099777 RNA-binding protein of the Puf family, translation 100.0
KOG2049536 consensus Translational repressor MPT5/PUF4 and re 100.0
cd07920322 Pumilio Pumilio-family RNA binding domain. Puf rep 100.0
KOG1488503 consensus Translational repressor Pumilio/PUF3 and 100.0
KOG2050 652 consensus Puf family RNA-binding protein [Translat 100.0
KOG2188650 consensus Predicted RNA-binding protein, contains 99.97
KOG2049536 consensus Translational repressor MPT5/PUF4 and re 99.96
COG5099777 RNA-binding protein of the Puf family, translation 99.96
KOG2188650 consensus Predicted RNA-binding protein, contains 99.85
KOG2050 652 consensus Puf family RNA-binding protein [Translat 99.81
KOG4574 1007 consensus RNA-binding protein (contains RRM and Pu 99.61
KOG45741007 consensus RNA-binding protein (contains RRM and Pu 99.25
PF0080635 PUF: Pumilio-family RNA binding repeat; InterPro: 97.77
PF0080635 PUF: Pumilio-family RNA binding repeat; InterPro: 97.43
smart0002536 Pumilio Pumilio-like repeats. Pumilio-like repeats 97.36
smart0002536 Pumilio Pumilio-like repeats. Pumilio-like repeats 97.28
PRK05686339 fliG flagellar motor switch protein G; Validated 94.44
TIGR00207338 fliG flagellar motor switch protein FliG. The fliG 93.76
PRK05686339 fliG flagellar motor switch protein G; Validated 87.66
COG1536339 FliG Flagellar motor switch protein [Cell motility 85.61
PF04286367 DUF445: Protein of unknown function (DUF445); Inte 84.36
PF08144148 CPL: CPL (NUC119) domain; InterPro: IPR012959 This 81.83
PF08144148 CPL: CPL (NUC119) domain; InterPro: IPR012959 This 80.57
>PF07990 NABP: Nucleic acid binding protein NABP; InterPro: IPR012940 This domain occurs in some putative nucleic acid binding proteins Back     alignment and domain information 
Probab=100.00  E-value=2.2e-76  Score=655.27  Aligned_cols=337  Identities=45%  Similarity=0.585  Sum_probs=311.5

Q ss_pred             CCCCCCCCCCCCcccccccCCCcCCCCCCC-----cchhHHHHHhcCCCCCcccccccchhhhhhhccCccccccccccC
Q 001686          324 RSSGSGLPPVGSRVGAVEKNGAVGSNVQND-----IELADIAATLSGLSLSNIRHADEVSHVQSQLQLNPDNQSDFLYDT  398 (1029)
Q Consensus       324 r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (1029)
                      |+|||||||||+||++.|||+++++++||+     +|+|||+|||||||||+++++++|+|+|+|+|+|||||++|+|++
T Consensus         1 R~PSp~lpPIG~Rv~s~eKk~~~g~~sfn~~SS~~~e~aDlvAALSGLNLS~~~~~~ee~~~qSqlqqdvdnqq~~lf~~   80 (385)
T PF07990_consen    1 RAPSPCLPPIGVRVGSVEKKNNGGSSSFNGVSSGINESADLVAALSGLNLSGNRAADEENHMQSQLQQDVDNQQDFLFNV   80 (385)
T ss_pred             CCCCCCCCCccccccchhcccccCCcccccccCCCCcHHHHHHHHhcCCcCcCccccccccchHHHHHHHHHhhhhhhcC
Confidence            899999999999999999999999999997     999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccccccccccccccccccccccCCCCCCCcccccccCCcccccccCC-CCccccccCCCCCCCCCCC-C
Q 001686          399 SNGHNQSMKQQFMDKSTADNLAFSTHYIDFTRKNGIVPNLNASAINSNGQVNILKRTS-SPNLYSKMNSTGFGGSSRS-V  476 (1029)
Q Consensus       399 ~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~  476 (1029)
                      |++|+| .+||.++++++++++..|                          ++++..+ .+++|+|++.++.+++++. +
T Consensus        81 q~~q~~-~~Qq~~~~~se~~~l~~~--------------------------e~~~a~~~~~~s~~~~~~~s~~~~~g~~~  133 (385)
T PF07990_consen   81 QGGQNQ-GNQQSYMKKSESGHLNAP--------------------------ELQKAAFPSGNSYFKNSNASKLSGGGGSP  133 (385)
T ss_pred             ccchhh-hhhHHHhhccchhhcccc--------------------------ccccccCCCccccccCCCcccccCCCCCC
Confidence            999999 899999999999888543                          2333344 5777888888888888874 7


Q ss_pred             CcccCCCCCCCCCCCCCCCccCCcccccccccCCCCCc-----------------------------------ccccccc
Q 001686          477 GRQQNANISSLDFTNVSGDYSVNQKLNSLVNHHFDTVG-----------------------------------IGATRNL  521 (1029)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~  521 (1029)
                      ..||+++.++..+    +||++||++++||.+++++|+                                   .+|+|++
T Consensus       134 ~~~q~~~~~n~~~----~gy~~n~~~~s~~~~~~~~gn~p~~fd~~~~~s~~~~~~~~s~~~g~~~~s~~~~~~~d~~~l  209 (385)
T PF07990_consen  134 FPYQNSDNPNSSF----GGYALNPALPSMMASQLNNGNIPPLFDNSAAASALASPGMDSRSLGGGLDSGGNQGASDGQNL  209 (385)
T ss_pred             CcccCCCcccccc----cccccCccchhhhhccccCCCCCccccccccchhhccCCCcccccCCcccccccccccchhhh
Confidence            7788887777765    899999999999988888864                                   2699999


Q ss_pred             ccccccc-ccCCCCCCCChhHHhhhhccchhhhhhhcccCCcccccCCCCCCCCCChhhHHHHHHHHHHHHHhhhhhhcc
Q 001686          522 NGMVNQV-ALDFHSPPMDPRYAQYLQRTSDYATRSAASASDPFAARNHFGSSLGDSDGLQKAHLELLLAQQNQQHEMQLL  600 (1029)
Q Consensus       522 ~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  600 (1029)
                      +|+|||+ |.++|+|++||+|+||||++++++++.|+ +.||+++|+|+|++++|++++||+||++||++||+|||+|+ 
T Consensus       210 ~r~gnq~~g~~lq~~~~DP~Y~Qylq~~~~aa~~~a~-~~dP~~~R~~~G~s~~dl~~~qKayl~~lL~~QK~Qy~~P~-  287 (385)
T PF07990_consen  210 NRFGNQVAGSALQSPFVDPLYLQYLQAPEYAAQQAAA-QNDPSVDRNYMGSSYMDLLGLQKAYLEALLAQQKSQYGVPL-  287 (385)
T ss_pred             hhhcccccCcccCCCCCCchHHHHhccccchhhhhhc-cCCcccccCCcCccccchHHHHHHHHHHHHHHHHHhhCCcc-
Confidence            9999997 79999999999999999999999988887 99999999999999999999999999999999999999999 


Q ss_pred             cCCCCCCCCCCCCCCCCccccCCCCCCCCCCCC----CCCCCCCCCCccccCcccccCCCC-CCCCCccCcCCCcchhhh
Q 001686          601 GKSGGLFPGYYETQPYRLDMQYSGNTFANPVLP----SVGSGSFPNERNSRFTSMMRSSMG-GPMPWHLDAGINMEGRLS  675 (1029)
Q Consensus       601 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----g~g~~~~~~~r~~r~~s~~r~~~g-~~~~w~~d~~~~~~~~~~  675 (1029)
                      .|+|+++++|||+|.||++|+|||+|+++|+||    |+|+|+|+++|++||++++|+..| .++.|+.|...++++++.
T Consensus       288 ~~~~~~n~~y~gnp~~G~gm~Y~gsplaspvlPsspvG~gsp~r~~er~~R~~s~mRn~~GG~~GsW~~d~g~~~d~~~~  367 (385)
T PF07990_consen  288 KKSGSMNHGYYGNPSYGLGMPYPGSPLASPVLPSSPVGPGSPLRHNERNMRFPSGMRNSSGGSMGSWHSDAGGNMDENFA  367 (385)
T ss_pred             ccCCCCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCcCCccccccCcccccccccccccccccccccccccch
Confidence            999999999999999999999999999999999    478999999999999999999955 999999999989999999


Q ss_pred             hHHHHhhhccccccccHh
Q 001686          676 SSLLDEFKTNKTRSFELS  693 (1029)
Q Consensus       676 s~LLeef~s~eek~l~L~  693 (1029)
                      +.||||||++|+|+|+|.
T Consensus       368 sSlLEEFKsNKtr~FELS  385 (385)
T PF07990_consen  368 SSLLEEFKSNKTRSFELS  385 (385)
T ss_pred             hHHHHHHhcCCccceecC
Confidence            999999999999999863

One of these proteins has been partially characterised [] and contains two putative phosphorylation sites and a possible dimerisation / leucine zipper domain.
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd07920 Pumilio Pumilio-family RNA binding domain Back     alignment and domain information
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd07920 Pumilio Pumilio-family RNA binding domain Back     alignment and domain information
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only] Back     alignment and domain information
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only] Back     alignment and domain information
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains Back     alignment and domain information
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains Back     alignment and domain information
>smart00025 Pumilio Pumilio-like repeats Back     alignment and domain information
>smart00025 Pumilio Pumilio-like repeats Back     alignment and domain information
>PRK05686 fliG flagellar motor switch protein G; Validated Back     alignment and domain information
>TIGR00207 fliG flagellar motor switch protein FliG Back     alignment and domain information
>PRK05686 fliG flagellar motor switch protein G; Validated Back     alignment and domain information
>COG1536 FliG Flagellar motor switch protein [Cell motility and secretion] Back     alignment and domain information
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function Back     alignment and domain information
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [] Back     alignment and domain information
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1029
3gvo_A351 Structure And Rna Binding Of The Mouse Pumilio-2 Pu 1e-113
3gvo_A351 Structure And Rna Binding Of The Mouse Pumilio-2 Pu 1e-21
3q0q_A351 Crystal Structure Of The Pumilio-Homology Domain Fr 1e-112
3q0q_A351 Crystal Structure Of The Pumilio-Homology Domain Fr 1e-21
1ib2_A349 Crystal Structure Of A Pumilio-Homology Domain Leng 1e-109
1ib2_A349 Crystal Structure Of A Pumilio-Homology Domain Leng 9e-21
3bsb_A343 Crystal Structure Of Human Pumilio1 In Complex With 1e-109
3bsb_A343 Crystal Structure Of Human Pumilio1 In Complex With 2e-20
2yjy_A350 A Specific And Modular Binding Code For Cytosine Re 1e-108
2yjy_A350 A Specific And Modular Binding Code For Cytosine Re 1e-19
2yjy_A 350 A Specific And Modular Binding Code For Cytosine Re 3e-07
3h3d_X323 Drosophila Pumilio Rna Binding Domain (Puf Domain) 1e-102
3h3d_X323 Drosophila Pumilio Rna Binding Domain (Puf Domain) 4e-22
3k49_A369 Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr R 9e-76
3bx3_A335 Puf4 T650cC724R MUTANT BOUND TO COX17 RNA 3' UTR Re 4e-42
4dzs_A357 Crystal Structure Of Yeast Puf4p Rna Binding Domain 3e-40
3bx2_A335 Puf4 Rna Binding Domain Bound To Ho Endonuclease Rn 8e-40
3bx2_A335 Puf4 Rna Binding Domain Bound To Ho Endonuclease Rn 1e-18
3bwt_A333 Crystal Structure Of The Rna Binding Domain Of Puf4 1e-39
3k5q_A412 Crystal Structure Of Fbf-2FBE COMPLEX Length = 412 9e-30
3qg9_A413 Crystal Structure Of Fbf-2GLD-1 Fbea A7u Mutant Com 1e-29
3qgb_A413 Crystal Structure Of Fbf-2 R288y Mutant In Complex 7e-29
3v71_A382 Crystal Structure Of Puf-6 In Complex With 5be13 Rn 9e-23
>pdb|3GVO|A Chain A, Structure And Rna Binding Of The Mouse Pumilio-2 Puf Domain Length = 351 Back     alignment and structure 
Iteration: 1

 Score =  407 bits (1046), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 192/338 (56%), Positives = 255/338 (75%), Gaps = 2/338 (0%)
Query: 676  SSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHA 735
            S LL++F+ N+  + +L D++ H+VEFS DQ+GSRFIQQKLE AT  E+  +F EI+  A
Sbjct: 5    SRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAA 64
Query: 736  RTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQ 795
              LMTDVFGNYVIQKFFE G+  Q+  LA+++ GHVL L+LQMYGCRVIQKALE +  DQ
Sbjct: 65   YQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQ 124
Query: 796  QTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRV 855
            Q++MV ELDG V+KCV DQNGNHV+QKCIEC+    +QFII +F GQV  LSTHPYGCRV
Sbjct: 125  QSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRV 184
Query: 856  IQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQ 915
            IQR+LEHC    T   I++E+ QH   L QDQYGNYVIQHVLEHG+P +++ +++++ G+
Sbjct: 185  IQRILEHCTAEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGK 243
Query: 916  IVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTD-ENEPLQAMMKDPFGNYVVQKV 974
            ++ +SQ KFASNVVEKC+T  S  ER LLI+E+    D  +  L  MMKD + NYVVQK+
Sbjct: 244  VLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKM 303
Query: 975  LETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEK 1012
            ++  +    ++I+ +IR H+  L+KYTYGKHI++++EK
Sbjct: 304  IDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEK 341
>pdb|3GVO|A Chain A, Structure And Rna Binding Of The Mouse Pumilio-2 Puf Domain Length = 351 Back     alignment and structure
>pdb|3Q0Q|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From Human Pumilio2 In Complex With P38alpha Nrea Length = 351 Back     alignment and structure
>pdb|3Q0Q|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From Human Pumilio2 In Complex With P38alpha Nrea Length = 351 Back     alignment and structure
>pdb|1IB2|A Chain A, Crystal Structure Of A Pumilio-Homology Domain Length = 349 Back     alignment and structure
>pdb|1IB2|A Chain A, Crystal Structure Of A Pumilio-Homology Domain Length = 349 Back     alignment and structure
>pdb|3BSB|A Chain A, Crystal Structure Of Human Pumilio1 In Complex With Cyclinb Reverse Rna Length = 343 Back     alignment and structure
>pdb|3BSB|A Chain A, Crystal Structure Of Human Pumilio1 In Complex With Cyclinb Reverse Rna Length = 343 Back     alignment and structure
>pdb|2YJY|A Chain A, A Specific And Modular Binding Code For Cytosine Recognition In Puf Domains Length = 350 Back     alignment and structure
>pdb|2YJY|A Chain A, A Specific And Modular Binding Code For Cytosine Recognition In Puf Domains Length = 350 Back     alignment and structure
>pdb|2YJY|A Chain A, A Specific And Modular Binding Code For Cytosine Recognition In Puf Domains Length = 350 Back     alignment and structure
>pdb|3H3D|X Chain X, Drosophila Pumilio Rna Binding Domain (Puf Domain) Length = 323 Back     alignment and structure
>pdb|3H3D|X Chain X, Drosophila Pumilio Rna Binding Domain (Puf Domain) Length = 323 Back     alignment and structure
>pdb|3K49|A Chain A, Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr Recognition Sequence Site B Length = 369 Back     alignment and structure
>pdb|3BX3|A Chain A, Puf4 T650cC724R MUTANT BOUND TO COX17 RNA 3' UTR Recognition Sequence Length = 335 Back     alignment and structure
>pdb|4DZS|A Chain A, Crystal Structure Of Yeast Puf4p Rna Binding Domain In Complex With Ho-4be Mutant Rna Length = 357 Back     alignment and structure
>pdb|3BX2|A Chain A, Puf4 Rna Binding Domain Bound To Ho Endonuclease Rna 3' Utr Recognition Sequence Length = 335 Back     alignment and structure
>pdb|3BX2|A Chain A, Puf4 Rna Binding Domain Bound To Ho Endonuclease Rna 3' Utr Recognition Sequence Length = 335 Back     alignment and structure
>pdb|3BWT|A Chain A, Crystal Structure Of The Rna Binding Domain Of Puf4 From Saccharomyces Cerevisiae Length = 333 Back     alignment and structure
>pdb|3K5Q|A Chain A, Crystal Structure Of Fbf-2FBE COMPLEX Length = 412 Back     alignment and structure
>pdb|3QG9|A Chain A, Crystal Structure Of Fbf-2GLD-1 Fbea A7u Mutant Complex Length = 413 Back     alignment and structure
>pdb|3QGB|A Chain A, Crystal Structure Of Fbf-2 R288y Mutant In Complex With Gld-1 Fbea Length = 413 Back     alignment and structure
>pdb|3V71|A Chain A, Crystal Structure Of Puf-6 In Complex With 5be13 Rna Length = 382 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1029
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 1e-172
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 1e-163
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 1e-40
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 2e-17
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 1e-142
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 1e-64
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 9e-40
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 1e-128
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 2e-49
3v71_A 382 PUF (pumilio/FBF) domain-containing protein 7, CO 1e-36
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 7e-32
3k62_A412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 1e-120
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Length = 351 Back     alignment and structure
 Score =  506 bits (1304), Expect = e-172
 Identities = 194/352 (55%), Positives = 257/352 (73%), Gaps = 2/352 (0%)

Query: 672  GRLSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEI 731
            G   S LL++F+ N+  + +L D++ H+VEFS DQ+GSRFIQQKLE AT  E+  +F EI
Sbjct: 1    GTGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEI 60

Query: 732  IPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVV 791
            +  A  LMTDVFGNYVIQKFFE G+  Q+  LA+++ GHVL L+LQMYGCRVIQKALE +
Sbjct: 61   LQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESI 120

Query: 792  HVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPY 851
              DQQ++MV ELDG V+KCV DQNGNHV+QKCIEC+    +QFII +F GQV  LSTHPY
Sbjct: 121  SSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPY 180

Query: 852  GCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQ 911
            GCRVIQR+LEHC    T  I+ +E+ QH   L QDQYGNYVIQHVLEHG+P +++ ++++
Sbjct: 181  GCRVIQRILEHCTAEQTLPIL-EELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSE 239

Query: 912  LAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENE-PLQAMMKDPFGNYV 970
            + G+++ +SQ KFASNVVEKC+T  S  ER LLI+E+    D     L  MMKD + NYV
Sbjct: 240  IRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYV 299

Query: 971  VQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIATGERRIG 1022
            VQK+++  +    ++I+ +IR H+  L+KYTYGKHI++++EK        +G
Sbjct: 300  VQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYYLKNSPDLG 351
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} PDB: 3k4e_A Length = 369 Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} PDB: 3k4e_A Length = 369 Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} PDB: 3k4e_A Length = 369 Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Length = 333 Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Length = 333 Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Length = 333 Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Length = 382 Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Length = 382 Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Length = 382 Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Length = 382 Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Length = 412 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1029
d1m8za_339 a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [Ta 1e-122
d1m8za_ 339 a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [Ta 1e-15
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Pumilio repeat
domain: Pumilio 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  373 bits (959), Expect = e-122
 Identities = 189/342 (55%), Positives = 250/342 (73%), Gaps = 4/342 (1%)

Query: 672  GRLSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEI 731
            GR  S LL++F+ N+  + +L +I  H++EFS DQ+GSRFIQ KLE AT  E+  +F EI
Sbjct: 1    GR--SRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEI 58

Query: 732  IPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVV 791
            +  A  LM DVFGNYVIQKFFE G+  Q+  LA ++ GHVL L+LQMYGCRVIQKALE +
Sbjct: 59   LQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFI 118

Query: 792  HVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPY 851
              DQQ +MV ELDG V+KCV DQNGNHV+QKCIEC+    +QFII +F GQV ALSTHPY
Sbjct: 119  PSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPY 178

Query: 852  GCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQ 911
            GCRVIQR+LEHC   +    I++E+ QH   L QDQYGNYVIQHVLEHG+P +++ ++ +
Sbjct: 179  GCRVIQRILEHCLP-DQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAE 237

Query: 912  LAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENE-PLQAMMKDPFGNYV 970
            + G ++ +SQ KFASNVVEKC+T  S  ER +LI+E+    D     L  MMKD + NYV
Sbjct: 238  IRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYV 297

Query: 971  VQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEK 1012
            VQK+++  +    ++++ +IR H+  L+KYTYGKHI++++EK
Sbjct: 298  VQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEK 339
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1029
d1m8za_339 Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1m8za_339 Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} 100.0
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Pumilio repeat
domain: Pumilio 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=468.31  Aligned_cols=337  Identities=55%  Similarity=0.951  Sum_probs=324.5

Q ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHC
Q ss_conf             56899862116565310865689999985098858999997410999999999999868698743375556200045203
Q 001686          675 SSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEH  754 (1029)
Q Consensus       675 ~s~LLeef~s~eek~l~L~EI~GkiveLA~Dq~GSRvIQklLe~~S~Eqr~~IfeEI~~~lleLmtD~fGshVIQKLLe~  754 (1029)
                      +++|+++|+.++.+.+++++++|+++++|+||+|||+||++|+++++++++.||+++.+++.+||+|+||||||||+|++
T Consensus         2 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~q~gSr~lQ~~l~~~~~~~~~~I~~~l~~~~~~L~~~~~gn~vvqkll~~   81 (339)
T d1m8za_           2 RSRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEF   81 (339)
T ss_dssp             CCHHHHHHHTTCCTTCCGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHH
T ss_pred             CCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             74476886637889973999981899981495123999999801999999999999998799986083204069999964


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHCCHHHHHH
Q ss_conf             69999999999975669884302334156767755058578999999310239898603468757899883099357989
Q 001686          755 GTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQF  834 (1029)
Q Consensus       755 ~s~eqr~~Li~~Lkg~I~~Ls~d~yGSrVIQklLe~ls~eq~~~Ll~EL~g~i~~Li~DqnGShVIQklLE~~~~e~~q~  834 (1029)
                      ++++++..|++.+.+++..|+.|+|||+|+|++++.+..+++..++.+|.+++..+++|++|+||+++|++..+++.+.+
T Consensus        82 ~~~~~~~~i~~~l~~~~~~L~~~~~gs~Vvq~l~~~~~~~~~~~l~~el~~~~~~l~~d~~~~~v~~~~l~~~~~~~~~~  161 (339)
T d1m8za_          82 GSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQF  161 (339)
T ss_dssp             SCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHHHSCGGGGHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH
T ss_conf             88999999999988659998501233167886541388799999999974205777408775568999998469999999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             99853210535104866404687886306998789999999999999972097840999999730894019999999999
Q 001686          835 IISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAG  914 (1029)
Q Consensus       835 Iie~l~g~lvsLA~hkyGs~VIQklLe~c~d~~~~~~IleELl~~L~~LA~DqyGNyVVQ~ILe~~~pk~r~~Ii~~L~g  914 (1029)
                      |++.+.+.+..+++|++||+++|++++.+. +..+..+++++...+..|++|++||||+|++|+++.++.++.|++.|++
T Consensus       162 i~~~~~~~~~~l~~~~~g~~vlq~~l~~~~-~~~~~~l~~~l~~~~~~L~~~~~G~~vvq~~l~~~~~~~~~~i~~~l~~  240 (339)
T d1m8za_         162 IIDAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRG  240 (339)
T ss_dssp             HHHHTTTTHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHHHHHTHHHHTTSTTHHHHHHHHHHHSCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             999999889999827611199999886089-9899889999999999997176089999999972999999999999985


Q ss_pred             HHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC-CCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             997522674378999999940899999999999944999-9846998540986579999998309946799999999997
Q 001686          915 QIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTD-ENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVH  993 (1029)
Q Consensus       915 ~iv~LS~~K~GSrVVEklL~~as~k~Rk~IIkeLlg~~d-~~e~L~~La~DqyGnyVIQklL~t~ddt~rk~Ii~eLk~~  993 (1029)
                      ++..|+++|+||+|+|+|+++++++.++.++++++...+ .++.|..|+.|+|||||||++|+++++++++.|++.|+++
T Consensus       241 ~~~~l~~~k~gS~vve~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~d~~gn~Viq~~l~~~~~~~~~~i~~~l~~~  320 (339)
T d1m8za_         241 NVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPH  320 (339)
T ss_dssp             CHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHCEETTEEHHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTGGG
T ss_pred             HHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             59999726057999999998489999999999997425675479999874996029999999859999999999999998


Q ss_pred             HHHHHHCCCCHHHHHHHHH
Q ss_conf             9988517884279999999
Q 001686          994 LNVLKKYTYGKHIVSRIEK 1012 (1029)
Q Consensus       994 L~eL~~~~yGk~Il~kIEk 1012 (1029)
                      +.+|+.++||++|+++++|
T Consensus       321 ~~~L~~~~~G~~v~~~l~~  339 (339)
T d1m8za_         321 IATLRKYTYGKHILAKLEK  339 (339)
T ss_dssp             HHHHTTSSTHHHHHHHHC-
T ss_pred             HHHHHCCCCHHHHHHHHHC
T ss_conf             9998369857999998709
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure