Citrus Sinensis ID: 001696
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1026 | 2.2.26 [Sep-21-2011] | |||||||
| Q6DN14 | 999 | Multiple C2 and transmemb | yes | no | 0.622 | 0.639 | 0.205 | 3e-18 | |
| Q6DN12 | 878 | Multiple C2 and transmemb | no | no | 0.631 | 0.738 | 0.216 | 2e-16 | |
| Q5RJH2 | 878 | Multiple C2 and transmemb | no | no | 0.610 | 0.712 | 0.213 | 6e-16 | |
| C9J798 | 803 | Putative Ras GTPase-activ | no | no | 0.224 | 0.286 | 0.253 | 2e-13 | |
| O43374 | 803 | Ras GTPase-activating pro | no | no | 0.224 | 0.286 | 0.253 | 2e-13 | |
| A0JJX5 | 569 | Synaptotagmin-4 OS=Arabid | no | no | 0.269 | 0.486 | 0.280 | 2e-12 | |
| Q5DTI8 | 891 | Extended synaptotagmin-3 | no | no | 0.208 | 0.240 | 0.271 | 1e-11 | |
| Q5M7N9 | 889 | Extended synaptotagmin-3 | no | no | 0.224 | 0.258 | 0.235 | 2e-11 | |
| A0FGR9 | 886 | Extended synaptotagmin-3 | no | no | 0.207 | 0.240 | 0.268 | 3e-11 | |
| O43581 | 403 | Synaptotagmin-7 OS=Homo s | no | no | 0.215 | 0.548 | 0.249 | 4e-11 |
| >sp|Q6DN14|MCTP1_HUMAN Multiple C2 and transmembrane domain-containing protein 1 OS=Homo sapiens GN=MCTP1 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 167/811 (20%), Positives = 317/811 (39%), Gaps = 172/811 (21%)
Query: 284 MSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKG-RTKHFEKRMNPEWNQVFAFSKER 342
M L + + + + L G+ DPYV+ K+G + R+K K +NP W + +
Sbjct: 260 MYQLDITLRRGQSLAARDRGGTSDPYVKFKIGGKEVFRSKIIHKNLNPVWEEKACILVDH 319
Query: 343 IQSSM-LEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRR------ 395
++ + ++VF D + +DD++G DL ++ P D L + D
Sbjct: 320 LREPLYIKVF--DYDFGLQDDFMGSAFLDLTQLELNRPTDVTLTLKDPHYPDHDLGIILL 377
Query: 396 ------GEGKVRGQTMLAIWMGTQADEAFAEA-------------WHS------------ 424
EG+ R TML ++ + +E W +
Sbjct: 378 SVILTPKEGESRDVTMLMRKSWKRSSKELSENEVVGSYFSVKSLFWRTCGRPALPVLGFC 437
Query: 425 --DASSVYGEGV-FNIRS----KVYVSPKLW--YLRVNVIEAQDIVPNDRNRLPEGFVKV 475
+ + Y + V F +S ++ LW + + +IE +D+ D N L + +VK
Sbjct: 438 RAELQNPYCKNVQFQTQSLRLSDLHRKSHLWRGIVSITLIEGRDLKAMDSNGLSDPYVKF 497
Query: 476 QVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASKDEVLGKISLPL 535
++G+Q K+KI P T NP W E F E + +T D+ +D+ +G+ + L
Sbjct: 498 RLGHQKYKSKIMPK-TLNPQWREQFDFHLYEERGGVIDITAWDKDAGKRDDFIGRCQVDL 556
Query: 536 --------HIFEKRLDHRPVH---------SRWFNLEKFGFGAIEADRRKELKFSSRVHL 578
H E +L+ H S ++ ++E + +E L
Sbjct: 557 SALSREQTHKLELQLEEGEGHLVLLVTLTASATVSISDLSVNSLEDQKEREEILKRYSPL 616
Query: 579 RVCLEGGYHVLDESTMYISDQRPTAKQLWKPPVGILEVGILGAQGLLPMKMKDGRGSTDA 638
R+ +H L + VG L+V ++ A+GL+ D G +D
Sbjct: 617 RI-----FHNLKD-------------------VGFLQVKVIRAEGLMAA---DVTGKSDP 649
Query: 639 YCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEKQNGSSA 698
+C+ + + T T+ NP+WN+ +T+ + D +V+ + V+D E ++ S+
Sbjct: 650 FCVVELNNDRLLTHTVYKNLNPEWNKVFTFNIKDIHSVLEVTVYD-------EDRDRSAD 702
Query: 699 VRDSRIGKVRIRLSTLE--AHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTIFSLASMIY 756
+GKV I L +++ + Y L GV I I + + +
Sbjct: 703 F----LGKVAIPLLSIQNGEQKAYVLKNKQLTGPTKGV---------IYLEIDVIFNAVK 749
Query: 757 VYGHPLLPKMHYLHPFTVNQVDNLRHQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWS 816
L+PK + + + L Q + +R+ R
Sbjct: 750 ASLRTLIPKEQKY----IEEENRLSKQLLLRNFIRMKRC--------------------- 784
Query: 817 MRRSKANFFRVMSLLSGMISVSRWFTDICNWRNPVTAVLVHILFLILIWYPELILPTVFL 876
VM L++ V+ F +W +P ++ +LFL ++W EL + + L
Sbjct: 785 ----------VMVLVNAAYYVNSCF----DWDSPPRSLAAFVLFLFVVWNFELYM--IPL 828
Query: 877 YMFLIGLWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSKTHDIVRIRYDRLRS 936
+ L+ WNY + + + +E +++ D + K I +I ++
Sbjct: 829 VLLLLLTWNYFLIISGKDNRQRDTVVEDMLEDEEEEDDKDDKDSEKKGFINKIYA--IQE 886
Query: 937 VAGRIQTVVGDIATQGERFQSLLSWRDPRATALFILFSLCAAMVLYTTPFKVVALLAGLY 996
V +Q ++ ++A+ GER ++ +W P + L I+ +LY P + + L+ G+
Sbjct: 887 VCVSVQNILDEVASFGERIKNTFNWTVPFLSWLAIVALCVFTAILYCIPLRYIVLVWGIN 946
Query: 997 YLRHPRFRSKLPS---VPSN----FFKRMPA 1020
+F KL S + +N F R+P+
Sbjct: 947 -----KFTKKLRSPYAIDNNELLDFLSRVPS 972
|
Homo sapiens (taxid: 9606) |
| >sp|Q6DN12|MCTP2_HUMAN Multiple C2 and transmembrane domain-containing protein 2 OS=Homo sapiens GN=MCTP2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 168/776 (21%), Positives = 312/776 (40%), Gaps = 128/776 (16%)
Query: 271 GERFTSTYDLVEQMSYLY-VRVVKAKDLPPSSITGSCDPYVEVKM-GNYKGRTKHFEKRM 328
GE +L +YL + + + ++L G+ DPYV+ K+ G ++K K +
Sbjct: 179 GEASDGLSNLPSPFAYLLTIHLKEGRNLVVRDRCGTSDPYVKFKLNGKTLYKSKVIYKNL 238
Query: 329 NPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQW 388
NP W+++ + + L V + D+++ D++G L+++ + L
Sbjct: 239 NPVWDEIVVLPIQSLDQK-LRVKVYDRDLTT-SDFMGSAFVILSDLELNRTTEHIL---- 292
Query: 389 YRLEDRRGEGKVRGQTMLAIWMGTQADEAFAEAWHSDA--SSVYGEGVFNIR-SKVYVSP 445
+LED G +L + + + + W + S+ + N+R S+
Sbjct: 293 -KLEDPNSLEDDMGVIVLNLNLVVKQGDFKRHRWSNRKRLSASKSSLIRNLRLSESLKKN 351
Query: 446 KLW--YLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTK-ICPTPTTNPLWNEDLVF 502
+LW + + ++E +++ + E FV++++G+Q K+K +C + NP W E
Sbjct: 352 QLWNGIISITLLEGKNV---SGGSMTEMFVQLKLGDQRYKSKTLCKS--ANPQWQEQ--- 403
Query: 503 VAAEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAI 562
F+ F DR+ EV GK + E+RL V L++ +
Sbjct: 404 -----FDFHYF---SDRMGILDIEVWGKDN---KKHEERLGTCKVDISALPLKQANCLEL 452
Query: 563 EADRRKELKFSSRVHLRVCLEGGYHVLDESTMYISD--------QRPTAKQLWK--PPVG 612
D V L C G V D ++D QR + K VG
Sbjct: 453 PLDSCLG-ALLMLVTLTPC--AGVSVSDLCVCPLADLSERKQITQRYCLQNSLKDVKDVG 509
Query: 613 ILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYD 672
IL+V +L A LL D G +D +C+ + G ++T T+ NP+WN+ +T+ + D
Sbjct: 510 ILQVKVLKAADLLA---ADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKD 566
Query: 673 PCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPH 732
V+ + VFD G+K +GKV I L ++ + +
Sbjct: 567 IHDVLEVTVFDE----DGDKP-------PDFLGKVAIPLLSIRDGQPNCY---------- 605
Query: 733 GVKKMGELQLAIRFTIFSLASMIYVYGHPLLPKMHYLHPFTVNQVDNLRHQAMNIVAVRL 792
V K +L+ A + I+ +IY P + FT
Sbjct: 606 -VLKNKDLEQAFKGVIYLEMDLIYN------PVKASIRTFT------------------- 639
Query: 793 GRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRVMSLLSGMISVSRWFTDICNWRNPVT 852
P K VE DS S + + RV + + + ++ W + +
Sbjct: 640 -----PREKRFVE-----DSRKLSKKILSRDVDRVKRITMAIWNTMQFLKSCFQWESTLR 689
Query: 853 AVLVHILFLILIWYPELILPTVFLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAVHPDELD 912
+ + +FLI +W EL + + L + LI ++N+ RP + K+S +
Sbjct: 690 STIAFAVFLITVWNFELYM--IPLALLLIFVYNF-IRP-----VKGKVSSIQDSQESTDI 741
Query: 913 EEFDTFPTSKTHDIVRI-RYDRLRSVAGRIQTVVGDIATQGERFQSLLSWRDPRATALFI 971
++ + ++ I R ++ + +Q V+ +IA+ GER ++ +W P ++L
Sbjct: 742 DDEEDEDDKESEKKGLIERIYMVQDIVSTVQNVLEEIASFGERIKNTFNWTVPFLSSLAC 801
Query: 972 LFSLCAAMVLYTTPFKVVALLAGLYYLRHPRFRSKLP---SVPSN----FFKRMPA 1020
L A ++LY P + + L+ G+ +F KL S+ +N F R+P+
Sbjct: 802 LILAAATIILYFIPLRYIILIWGIN-----KFTKKLRNPYSIDNNELLDFLSRVPS 852
|
Homo sapiens (taxid: 9606) |
| >sp|Q5RJH2|MCTP2_MOUSE Multiple C2 and transmembrane domain-containing protein 2 OS=Mus musculus GN=Mctp2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 87.0 bits (214), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 163/765 (21%), Positives = 299/765 (39%), Gaps = 139/765 (18%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKM-GNYKGRTKHFEKRMNPEWNQVFAFSKERIQS 345
L + + + ++L G+ DPYV+ K+ G ++K K +NP W+++ + +
Sbjct: 196 LTIHLKEGRNLVVRDRCGTSDPYVKFKLNGKTLYKSKVIYKNLNPIWDEIVVLPIQSLDQ 255
Query: 346 SMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTM 405
L V + D+++ + D++G L ++ + L +LED G +
Sbjct: 256 K-LRVKVYDRDLT-KSDFMGSAFVVLRDLELNRTTEHIL-----KLEDPNSLEDDMGVIV 308
Query: 406 LAIWMGTQADEAFAEAWHSDA--SSVYGEGVFNIR-SKVYVSPKLW--YLRVNVIEAQDI 460
L + + + + W + S+ + N+R S+ +LW + + ++E +++
Sbjct: 309 LNLNLVVKQGDFKRHRWSNRKRLSASKSSLIRNLRLSESLRKNQLWNGIISITLLEGKNV 368
Query: 461 VPNDRNRLPEGFVKVQVGNQVLKTK-ICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDR 519
+ + E FV++++G Q K+K +C + NP W E F+ F DR
Sbjct: 369 SGGN---MTEMFVQLKLGEQRYKSKTLCKS--ANPQWQEQ--------FDFHYF---SDR 412
Query: 520 VHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFSS----- 574
+ EV GK S E+RL V L++ D EL S
Sbjct: 413 MGILDIEVWGKDS---KKHEERLGTCKVDISALPLKQ--------DNCLELPLESCQGAL 461
Query: 575 --RVHLRVCLEGGYHVLDESTMYISD--QRPTAKQLWK--------PPVGILEVGILGAQ 622
+ L C G + D D +R Q + VGIL+V +L A
Sbjct: 462 LMLITLTPC--TGVSISDLCVCPFEDPSERQQISQRYAFQNSLKDVKDVGILQVKVLKAS 519
Query: 623 GLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVF 682
LL D G +D +C+ + G ++T TI NP+WN+ +T+ + D V+ + VF
Sbjct: 520 DLLAA---DFSGKSDPFCLLELGNDRLQTHTIYKNLNPEWNKVFTFPIKDIHDVLEVTVF 576
Query: 683 DNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQL 742
D ++G A +GKV I L ++ + + V K +L+
Sbjct: 577 D---------EDGDKA--PDFLGKVAIPLLSIRDGQPNCY-----------VLKNKDLEQ 614
Query: 743 AIRFTIFSLASMIYVYGHPLLPKMHYLHPFTVNQVDNLRHQAMNIVAVRLGRAEPPLRKE 802
A + I+ +IY P + FT P K
Sbjct: 615 AFKGLIYLELDLIYN------PVKASIRTFT------------------------PREKR 644
Query: 803 VVEYMLDVDSHMWSMRRSKANFFRVMSLLSGMISVSRWFTDICNWRNPVTAVLVHILFLI 862
VE DS S + + RV L + + ++F W + + + + ++FL+
Sbjct: 645 FVE-----DSRKLSKKILSRDVDRVKRLTLAIWNTVQFFKSCFQWESTLRSTIAFVVFLV 699
Query: 863 LIWYPELILPTVFLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSK 922
+W EL YM + L P S ++ +++EE
Sbjct: 700 TVWNFEL-------YMIPLALLLLFLYNFLRPMKGKASSTQDSQESTDVEEEGKEEEKES 752
Query: 923 THDIVRIRYDRLRSVAGRIQTVVGDIATQGERFQSLLSWRDPRATALFILFSLCAAMVLY 982
+ R ++ + +Q ++ ++A+ GER +++ +W P + L L ++LY
Sbjct: 753 EKKGIIERIYMVQDIVSTVQNILEEVASFGERIKNVFNWTVPFLSLLACLILAITTVILY 812
Query: 983 TTPFKVVALLAGLYYLRHPRFRSKLP---SVPSN----FFKRMPA 1020
P + + LL G+ +F KL S+ +N F R+P+
Sbjct: 813 FIPLRYIILLWGI-----NKFTKKLRNPYSIDNNELLDFLSRVPS 852
|
Mus musculus (taxid: 10090) |
| >sp|C9J798|RAS4B_HUMAN Putative Ras GTPase-activating protein 4B OS=Homo sapiens GN=RASA4B PE=5 SV=2 | Back alignment and function description |
|---|
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 118/272 (43%), Gaps = 42/272 (15%)
Query: 285 SYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKG-RTKHFEKRMNPEWNQVFAFSKERI 343
S LY+R+V+ K+LP ITGS DPY VK+ N RT K + P W + +
Sbjct: 5 SSLYIRIVEGKNLPAKDITGSSDPYCIVKVDNEPIIRTATVWKTLCPFWGEEYQVHLPPT 64
Query: 344 QSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQ 403
++ ++ D++ + RDD +G+V + + + S W L + + +V+G+
Sbjct: 65 FHAV-AFYVMDEDALSRDDVIGKVCLTRDTIASHPKGFSG----WAHLTEVDPDEEVQGE 119
Query: 404 TMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPN 463
++R +V+ + LR +V+EA+D+ P
Sbjct: 120 -------------------------------IHLRLEVWPGARACRLRCSVLEARDLAPK 148
Query: 464 DRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHAS 523
DRN + FV+V+ + +T I + P WNE F E E L + D S
Sbjct: 149 DRNGTSDPFVRVRYKGRTRETSIV-KKSCYPRWNETFEFELQEGAMEALCVEAWDWDLVS 207
Query: 524 KDEVLGKISLPLHIFEKRLDHRPVHSRWFNLE 555
+++ LGK+ + + +RL WF L+
Sbjct: 208 RNDFLGKVVIDV----QRLRVVQQEEGWFRLQ 235
|
Ca(2+)-dependent Ras GTPase-activating protein, that may play a role in the Ras-MAPK pathway. Homo sapiens (taxid: 9606) |
| >sp|O43374|RASL2_HUMAN Ras GTPase-activating protein 4 OS=Homo sapiens GN=RASA4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 118/272 (43%), Gaps = 42/272 (15%)
Query: 285 SYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKG-RTKHFEKRMNPEWNQVFAFSKERI 343
S LY+R+V+ K+LP ITGS DPY VK+ N RT K + P W + +
Sbjct: 5 SSLYIRIVEGKNLPAKDITGSSDPYCIVKVDNEPIIRTATVWKTLCPFWGEEYQVHLPPT 64
Query: 344 QSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQ 403
++ ++ D++ + RDD +G+V + + + S W L + + +V+G+
Sbjct: 65 FHAV-AFYVMDEDALSRDDVIGKVCLTRDTIASHPKGFSG----WAHLTEVDPDEEVQGE 119
Query: 404 TMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPN 463
++R +V+ + LR +V+EA+D+ P
Sbjct: 120 -------------------------------IHLRLEVWPGARACRLRCSVLEARDLAPK 148
Query: 464 DRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHAS 523
DRN + FV+V+ + +T I + P WNE F E E L + D S
Sbjct: 149 DRNGTSDPFVRVRYKGRTRETSIV-KKSCYPRWNETFEFELQEGAMEALCVEAWDWDLVS 207
Query: 524 KDEVLGKISLPLHIFEKRLDHRPVHSRWFNLE 555
+++ LGK+ + + +RL WF L+
Sbjct: 208 RNDFLGKVVIDV----QRLRVVQQEEGWFRLQ 235
|
Ca(2+)-dependent Ras GTPase-activating protein, that switches off the Ras-MAPK pathway following a stimulus that elevates intracellular calcium. Functions as an adaptor for Cdc42 and Rac1 during FcR-mediated phagocytosis. Homo sapiens (taxid: 9606) |
| >sp|A0JJX5|SYT4_ARATH Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 131/317 (41%), Gaps = 40/317 (12%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEV---KMGNYKGRTKHFEKRMNPEWNQVFAFSKERI 343
L V+VV+AKDL + G DPY V + + +TK +NP WN+ F F E +
Sbjct: 266 LDVKVVQAKDLANKDMIGKSDPYAIVFIRPLPDRTKKTKTISNSLNPIWNEHFEFIVEDV 325
Query: 344 QSSMLEVFLKDKEMVGRDDYLGRVAFDLNE-VPTRVPPDSPLAPQWYR----LEDRRGEG 398
+ L V + D E VG +G LNE VP +V W + LE +R +
Sbjct: 326 STQHLTVRVFDDEGVGSSQLIGAAQVPLNELVPGKV------KDIWLKLVKDLEIQR-DT 378
Query: 399 KVRGQTMLAIWMGTQADE-AFAEAWHSDASSVYGEGVFNIRS---------KVYVSPK-- 446
K RGQ L + E ++ D S E V S K+ S K
Sbjct: 379 KNRGQVQLELLYCPLGKEGGLKNPFNPDYSLTILEKVLKPESEDSDATDMKKLVTSKKKD 438
Query: 447 ---LWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTT-NPLWNEDLVF 502
L V V+ A+D+ D + FV + + K+K P + NP+WN+ F
Sbjct: 439 VIVRGVLSVTVVAAEDLPAVDFMGKADAFVVITLKKSETKSKTRVVPDSLNPVWNQTFDF 498
Query: 503 VAAEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAI 562
V + + L L V D KD++ G++ + L R+ WF L+ GA
Sbjct: 499 VVEDALHDLLTLEVWDHDKFGKDKI-GRVIMTLT----RVMLEGEFQEWFELD----GAK 549
Query: 563 EADRRKELKFSSRVHLR 579
LK++ R+ LR
Sbjct: 550 SGKLCVHLKWTPRLKLR 566
|
May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5DTI8|ESYT3_MOUSE Extended synaptotagmin-3 OS=Mus musculus GN=Esyt3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 103/243 (42%), Gaps = 29/243 (11%)
Query: 301 SITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGR 360
+ G DPY +V +G R++ K +NP WN+VF F + LEV L D++ +
Sbjct: 330 GLGGKSDPYAKVSIGLQHCRSRTIYKNLNPTWNEVFEFMVYEVPGQDLEVDLYDED-TDK 388
Query: 361 DDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAI-WMGTQADEAFA 419
DD+LG + L +V D +W+ L D G+ L + W+ D+
Sbjct: 389 DDFLGSLQICLGDVMKNRVVD-----EWFALND-----TTSGRLHLRLEWLSLLTDQEAL 438
Query: 420 EAWHSDASS----VYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKV 475
S S+ V+ E N+ + Y + V N +R P +VK+
Sbjct: 439 TENDSGLSTAILVVFLENACNLPRNPFDYLNGEY---RAKKLSRFVKNKASRDPSSYVKL 495
Query: 476 QVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASKDEV---LGKIS 532
VG + +K CP + +P+W++ F EQL L V D DE+ LG +
Sbjct: 496 TVGKKTFTSKTCPH-SKDPVWSQVFSFFVHSVAAEQLCLKVLD------DELECALGVLE 548
Query: 533 LPL 535
PL
Sbjct: 549 FPL 551
|
May play a role as calcium-regulated intrinsic membrane protein. Mus musculus (taxid: 10090) |
| >sp|Q5M7N9|ESYT3_XENTR Extended synaptotagmin-3 OS=Xenopus tropicalis GN=esyt3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 116/263 (44%), Gaps = 33/263 (12%)
Query: 287 LYVRVVKAKDLPPSS------ITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSK 340
L + +++A+DL P I G DPY +++GN +++ ++ +NP+W +++ F
Sbjct: 350 LRLHLIEAEDLIPKDNYLKGIIRGKSDPYAVLRIGNQNFKSRTIKENLNPKWGEMYEFVV 409
Query: 341 ERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLED-RRGEGK 399
+ LEV L D++ +DD+LG + L V + +W+ L D G
Sbjct: 410 HEVPGQDLEVDLYDED-PDKDDFLGSLVIGLEGV-----MQDRVVDEWFPLSDVPSGSVH 463
Query: 400 VRGQTMLAIWMGTQADEAFAEAWHS------DASSVYGEGVFNIRSKVYVSPKLWYLRVN 453
+R + + + + EA + D++S F S Y + K ++
Sbjct: 464 LRLEWLSLLPKSEKLSEAKGGISTAMLIVYLDSASALPRNHFEYSSSEYTTRKQRHMTY- 522
Query: 454 VIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLF 513
++ P +V + VG + +K+K C T +T P+W + F + + L
Sbjct: 523 ---------TKTDKDPNSYVLMSVGKKSVKSKTC-TGSTEPVWGQAFAFFIQDVHMQHLH 572
Query: 514 LTVEDRVHASKDEVLGKISLPLH 536
L V+D + + LG + LPLH
Sbjct: 573 LEVKD---SERQCALGMLDLPLH 592
|
May play a role as calcium-regulated intrinsic membrane protein. Xenopus tropicalis (taxid: 8364) |
| >sp|A0FGR9|ESYT3_HUMAN Extended synaptotagmin-3 OS=Homo sapiens GN=ESYT3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 106/242 (43%), Gaps = 29/242 (11%)
Query: 302 ITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRD 361
+ G DPY +V +G R++ + +NP WN+VF F + LEV L D++ RD
Sbjct: 327 LRGKSDPYAKVSIGLQHFRSRTIYRNLNPTWNEVFEFMVYEVPGQDLEVDLYDED-TDRD 385
Query: 362 DYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAI-WMGTQADEAFAE 420
D+LG + L +V T D +W+ L D G+ L + W+ D+
Sbjct: 386 DFLGSLQICLGDVMTNRVVD-----EWFVLND-----TTSGRLHLRLEWLSLLTDQEVLT 435
Query: 421 AWHSDASS----VYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPNDRNRL---PEGFV 473
H S+ V+ E N+ + YL A+ + RN++ P +V
Sbjct: 436 EDHGGLSTAILVVFLESACNLPRNPFD-----YLN-GEYRAKKLSRFARNKVSKDPSSYV 489
Query: 474 KVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASKDEVLGKISL 533
K+ VG + +K CP +P+W++ F E+L L V D ++ LG + +
Sbjct: 490 KLSVGKKTHTSKTCPH-NKDPVWSQVFSFFVHNVATERLHLKVLD---DDQECALGMLEV 545
Query: 534 PL 535
PL
Sbjct: 546 PL 547
|
May play a role as calcium-regulated intrinsic membrane protein. Homo sapiens (taxid: 9606) |
| >sp|O43581|SYT7_HUMAN Synaptotagmin-7 OS=Homo sapiens GN=SYT7 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 126/273 (46%), Gaps = 52/273 (19%)
Query: 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKM---GNYKGRTKHFEKRMN 329
+F+ Y+ Q S L V+++KA++LP +G+ DP+V++ + +K TK K +N
Sbjct: 140 QFSVGYNF--QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLN 197
Query: 330 PEWNQVFAFSK---ERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAP 386
P WN+ F F E++ +L + + D + R+D +G V+ LN+V + +
Sbjct: 198 PHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL-----TQMQT 252
Query: 387 QWYRLEDRRGEGKVRGQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVSPK 446
W L+ RG+ +L++ ++ A+S+
Sbjct: 253 FWKDLKPCSDGSGSRGELLLSL------------CYNPSANSII---------------- 284
Query: 447 LWYLRVNVIEAQDIVPNDRNRLPEGFVKVQV---GNQVLKTK-ICPTPTTNPLWNEDLVF 502
VN+I+A+++ D + +VKV + +V K K + NP++NE F
Sbjct: 285 -----VNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTMKRNLNPIFNESFAF 339
Query: 503 -VAAEPFEE-QLFLTVEDRVHASKDEVLGKISL 533
+ E E + +TV D+ S+++V+GKI L
Sbjct: 340 DIPTEKLRETTIIITVMDKDKLSRNDVIGKIYL 372
|
May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1026 | ||||||
| 224055261 | 1051 | predicted protein [Populus trichocarpa] | 0.998 | 0.974 | 0.795 | 0.0 | |
| 255544258 | 1049 | synaptotagmin, putative [Ricinus communi | 0.996 | 0.974 | 0.800 | 0.0 | |
| 356531850 | 1060 | PREDICTED: multiple C2 and transmembrane | 0.998 | 0.966 | 0.759 | 0.0 | |
| 359487420 | 1046 | PREDICTED: uncharacterized protein LOC10 | 0.994 | 0.975 | 0.766 | 0.0 | |
| 449463777 | 1055 | PREDICTED: multiple C2 and transmembrane | 0.990 | 0.963 | 0.746 | 0.0 | |
| 449501571 | 1055 | PREDICTED: LOW QUALITY PROTEIN: multiple | 0.990 | 0.963 | 0.745 | 0.0 | |
| 297791937 | 1038 | C2 domain-containing protein [Arabidopsi | 0.976 | 0.965 | 0.699 | 0.0 | |
| 15238879 | 1036 | C2 calcium/lipid-binding and phosphoribo | 0.984 | 0.974 | 0.699 | 0.0 | |
| 356542393 | 1180 | PREDICTED: multiple C2 and transmembrane | 0.793 | 0.689 | 0.826 | 0.0 | |
| 356555291 | 894 | PREDICTED: multiple C2 and transmembrane | 0.836 | 0.959 | 0.732 | 0.0 |
| >gi|224055261|ref|XP_002298449.1| predicted protein [Populus trichocarpa] gi|222845707|gb|EEE83254.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1751 bits (4535), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 838/1053 (79%), Positives = 922/1053 (87%), Gaps = 29/1053 (2%)
Query: 1 MKLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTK 60
MKLVVE+VDA+DLMPKDG+GSASPF EVDF NQLSKTKTIPKNLNPVWNQKLLFD D+TK
Sbjct: 1 MKLVVEIVDAHDLMPKDGKGSASPFVEVDFQNQLSKTKTIPKNLNPVWNQKLLFDLDETK 60
Query: 61 SHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGE 120
+ +H IEVS+Y+ ERRPIPGR+FLGR RIPCSN+V+KG+EVYQ F LEKKWF S+VKGE
Sbjct: 61 NRHHQSIEVSVYN-ERRPIPGRNFLGRTRIPCSNVVKKGDEVYQTFQLEKKWFFSTVKGE 119
Query: 121 VGLKIYISPQSET-----------------TQPPTSSLPKPKSPKNTTNLDSKTFTALPK 163
+GLKIY S +S+ T +SSLP T D +T ALP+
Sbjct: 120 IGLKIYTSLESKAPPLPSPSQPPPSNIPPETSASSSSLPTITHIAENTGRDCRTLAALPR 179
Query: 164 VEELAAVDAPKSLPEEEISRISL----------KEDIKEPAKVTVEPIQEFLKQQVVLQP 213
E L +A P ++IS IS K KEP K+ + Q K QV+ +
Sbjct: 180 AEILHTSEAITEQPGKKISAISETSGGFPAKEPKNSNKEPTKIRADTTQHVHKHQVLQKT 239
Query: 214 GQSVEKQPQGVPFTMHSMNLQQGRPGDQEEYNLKDTNPQLGERWPNGGGYGGRGWMSGER 273
QSVEK P G P+TMH+ N D +++NLKDT+PQLGERWP+GG YGGRGWM+GER
Sbjct: 240 SQSVEKLPNGAPYTMHAAN-PSAHSSDLDDFNLKDTDPQLGERWPSGGAYGGRGWMNGER 298
Query: 274 FTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWN 333
+ STYDLVEQ+SYLYVR+VKAKDLP SSIT SCDPYVEVK+GNYKGRT+HFEK+MNPEWN
Sbjct: 299 YASTYDLVEQVSYLYVRIVKAKDLPSSSITASCDPYVEVKLGNYKGRTRHFEKKMNPEWN 358
Query: 334 QVFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLED 393
QVFAFSK+RIQSS+LEVF+KDKEMVGRDDYLGRV FDLNEVPTRVPPDSPLAPQWYRLED
Sbjct: 359 QVFAFSKDRIQSSVLEVFVKDKEMVGRDDYLGRVVFDLNEVPTRVPPDSPLAPQWYRLED 418
Query: 394 RRGEGKVRGQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVSPKLWYLRVN 453
RRGEGKVRG+ MLA+WMGTQADEAF +AWHSDA+SVYGEGV NIRSKVYVSPKLWYLRVN
Sbjct: 419 RRGEGKVRGEIMLAVWMGTQADEAFPDAWHSDAASVYGEGVLNIRSKVYVSPKLWYLRVN 478
Query: 454 VIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLF 513
VIEAQD+VP+DR+RLPE FVKVQVGNQVL+TKI PT T NPLWNEDLVFV AEPFEEQLF
Sbjct: 479 VIEAQDVVPSDRSRLPEVFVKVQVGNQVLRTKIHPTRTANPLWNEDLVFVVAEPFEEQLF 538
Query: 514 LTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFS 573
LTVEDR+ KD+VLGKIS+PL+IFEKRLDHRPVHSRWFNLEK+GFG +EADRRKELKFS
Sbjct: 539 LTVEDRLTPLKDDVLGKISVPLNIFEKRLDHRPVHSRWFNLEKYGFGVLEADRRKELKFS 598
Query: 574 SRVHLRVCLEGGYHVLDESTMYISDQRPTAKQLWKPPVGILEVGILGAQGLLPMKMKDGR 633
SR+HLRVCLEGGYHV+DESTMYISDQRPTA+QLWK PVGILEVGILGAQGLLPMKMKDGR
Sbjct: 599 SRIHLRVCLEGGYHVMDESTMYISDQRPTARQLWKQPVGILEVGILGAQGLLPMKMKDGR 658
Query: 634 GSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEKQ 693
GSTDAYC+AKYGQKWVRTRTI+DTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEK
Sbjct: 659 GSTDAYCVAKYGQKWVRTRTIVDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEKP 718
Query: 694 NGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTIFSLAS 753
++A RD RIGKVRIRLSTLEA+R YTHSYPLLVLHP GVKKMGELQLA+RFT SLA+
Sbjct: 719 TAANAARDLRIGKVRIRLSTLEAYRTYTHSYPLLVLHPLGVKKMGELQLAVRFTTLSLAN 778
Query: 754 MIYVYGHPLLPKMHYLHPFTVNQVDNLRHQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSH 813
MIYVYGHPLLPKMHYLHPFTVNQVDNLR+QAMNIVAVRLGRAEPPLRKEVVEYMLDVDSH
Sbjct: 779 MIYVYGHPLLPKMHYLHPFTVNQVDNLRYQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSH 838
Query: 814 MWSMRRSKANFFRVMSLLSGMISVSRWFTDICNWRNPVTAVLVHILFLILIWYPELILPT 873
WSMRRSKANFFR+MSL+SG+ S+S WF DIC WRNP+T+VLVHILFLILIWYPELILPT
Sbjct: 839 TWSMRRSKANFFRIMSLISGLFSMSHWFGDICQWRNPITSVLVHILFLILIWYPELILPT 898
Query: 874 VFLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSKTHDIVRIRYDR 933
+FLYMFLIG+WNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSK+HDIVR+RYDR
Sbjct: 899 LFLYMFLIGIWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSKSHDIVRMRYDR 958
Query: 934 LRSVAGRIQTVVGDIATQGERFQSLLSWRDPRATALFILFSLCAAMVLYTTPFKVVALLA 993
LR VAGRIQTVVGDIATQGERFQSLLSWRDPRAT+LFI+F LCAA+VLY TPF+VVAL+A
Sbjct: 959 LRGVAGRIQTVVGDIATQGERFQSLLSWRDPRATSLFIVFCLCAAVVLYVTPFRVVALVA 1018
Query: 994 GLYYLRHPRFRSKLPSVPSNFFKRMPARTDSLL 1026
GLYYLRHPRFRSKLPSVPSNFFKR+PARTDSLL
Sbjct: 1019 GLYYLRHPRFRSKLPSVPSNFFKRLPARTDSLL 1051
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255544258|ref|XP_002513191.1| synaptotagmin, putative [Ricinus communis] gi|223547689|gb|EEF49182.1| synaptotagmin, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1737 bits (4498), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 843/1053 (80%), Positives = 919/1053 (87%), Gaps = 31/1053 (2%)
Query: 1 MKLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTK 60
MKLVVEVVDA+DLMPKDGEGSAS F EVDF NQLSKT T+PKNLNP+WNQKL+FD DQ K
Sbjct: 1 MKLVVEVVDAHDLMPKDGEGSASTFVEVDFQNQLSKTITVPKNLNPIWNQKLVFDLDQNK 60
Query: 61 SHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGE 120
+ +H IEVS+Y+ ERRPIPGR+FLGR RIPCSN+V+KGEEVYQ F LEKKWF SSVKG+
Sbjct: 61 NLHHQFIEVSLYN-ERRPIPGRNFLGRTRIPCSNIVKKGEEVYQSFQLEKKWFFSSVKGD 119
Query: 121 VGLKIYISPQSETTQPPTSSLP--KPKSPK-------------NTTNLDSKTFTALPKVE 165
+GLKIYI P+SE +PP+ S+P P+ P TNLD KT ALP+
Sbjct: 120 IGLKIYILPESEI-KPPSLSIPLQPPQVPAFSSPIPSATAHIAENTNLDCKTLAALPR-R 177
Query: 166 ELAAVDAPKSLP---EEEISRISLKEDIKEPAKV--------TVEPIQE-FLKQQVVLQP 213
E+A+V K++ ++EI ++ E+ P V EP ++ K QV+ QP
Sbjct: 178 EVASVSTTKTITLQTKKEICVPAVIENSSSPVAVIKSSGSSLAKEPNKDGIYKHQVLQQP 237
Query: 214 GQSVEKQPQGVPFTMHSMNLQQGRPGDQEEYNLKDTNPQLGERWPNGGGYGGRGWMSGER 273
EKQPQG+ TM N Q P DQ++Y LKDTNPQLGERWP GG YGGRGWM ER
Sbjct: 238 SLLREKQPQGILHTMQFAN-QPSHPSDQDDYTLKDTNPQLGERWPAGGAYGGRGWMHSER 296
Query: 274 FTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWN 333
+ STYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVK+GNY+GR+KHFEK+MNPEWN
Sbjct: 297 YASTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKLGNYRGRSKHFEKKMNPEWN 356
Query: 334 QVFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLED 393
QVFAFSK+RIQSSMLEVF+KDKEM GRDDYLGRV FDLNE+PTRVPPDSPLAPQWYRLED
Sbjct: 357 QVFAFSKDRIQSSMLEVFVKDKEMFGRDDYLGRVVFDLNEIPTRVPPDSPLAPQWYRLED 416
Query: 394 RRGEGKVRGQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVSPKLWYLRVN 453
RRGEGKVRG MLA+WMGTQADEAF EAWH+DASSVYGEGV +IRSKVYVSPKLWYLRVN
Sbjct: 417 RRGEGKVRGDVMLAVWMGTQADEAFPEAWHADASSVYGEGVLSIRSKVYVSPKLWYLRVN 476
Query: 454 VIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLF 513
VIEAQDIVPNDR R+PE FVKVQVGNQ+LKTK+ P T NPLWNEDLVFV AEPFEEQL
Sbjct: 477 VIEAQDIVPNDRGRIPEVFVKVQVGNQILKTKVNPIRTANPLWNEDLVFVVAEPFEEQLL 536
Query: 514 LTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFS 573
LTVEDRVH ++++VLGKISLPL FEKRLDHRPVHSRWFNLEKFGFG +EADRRKELKFS
Sbjct: 537 LTVEDRVHPAREDVLGKISLPLTTFEKRLDHRPVHSRWFNLEKFGFGVLEADRRKELKFS 596
Query: 574 SRVHLRVCLEGGYHVLDESTMYISDQRPTAKQLWKPPVGILEVGILGAQGLLPMKMKDGR 633
SR+HLRVCLEGGYHVLDESTMYISDQRPTAKQLWK PVGILEVGIL AQGLLPMKMKDGR
Sbjct: 597 SRIHLRVCLEGGYHVLDESTMYISDQRPTAKQLWKQPVGILEVGILSAQGLLPMKMKDGR 656
Query: 634 GSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEKQ 693
GSTDAYC+AKYGQKWVRTRTILDTF+PKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEK
Sbjct: 657 GSTDAYCVAKYGQKWVRTRTILDTFSPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEKP 716
Query: 694 NGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTIFSLAS 753
N +A RDSRIGKVRIRLSTLEA RIYTHSYPLLVLHP GVKKMGELQLA+RFT SLA+
Sbjct: 717 NAPNAARDSRIGKVRIRLSTLEAFRIYTHSYPLLVLHPTGVKKMGELQLAVRFTTLSLAN 776
Query: 754 MIYVYGHPLLPKMHYLHPFTVNQVDNLRHQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSH 813
MIYVYGHPLLPKMHYLHPFTVNQVDNLR+QAM+IVAVRLGRAEPPLRKEVVEYMLDVDSH
Sbjct: 777 MIYVYGHPLLPKMHYLHPFTVNQVDNLRYQAMSIVAVRLGRAEPPLRKEVVEYMLDVDSH 836
Query: 814 MWSMRRSKANFFRVMSLLSGMISVSRWFTDICNWRNPVTAVLVHILFLILIWYPELILPT 873
MWSMRRSKANFFR+MSLLSGM S+SRWF DIC WRNPVT+VLVH+LFLILIWYPELILPT
Sbjct: 837 MWSMRRSKANFFRIMSLLSGMFSMSRWFGDICQWRNPVTSVLVHVLFLILIWYPELILPT 896
Query: 874 VFLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSKTHDIVRIRYDR 933
+FLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTS+ HD VR+RYDR
Sbjct: 897 LFLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSRPHDTVRMRYDR 956
Query: 934 LRSVAGRIQTVVGDIATQGERFQSLLSWRDPRATALFILFSLCAAMVLYTTPFKVVALLA 993
LRSVAGRIQTVVGD+ATQ ER LLSWRDPRAT+LF+LF LCAA+VLY TPF+VVAL+A
Sbjct: 957 LRSVAGRIQTVVGDMATQCERLGCLLSWRDPRATSLFVLFCLCAAVVLYATPFRVVALVA 1016
Query: 994 GLYYLRHPRFRSKLPSVPSNFFKRMPARTDSLL 1026
GLYYLRHP+FRSKLPSVPSNFFKR+PARTDSLL
Sbjct: 1017 GLYYLRHPKFRSKLPSVPSNFFKRLPARTDSLL 1049
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356531850|ref|XP_003534489.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1679 bits (4347), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 807/1062 (75%), Positives = 915/1062 (86%), Gaps = 38/1062 (3%)
Query: 1 MKLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTK 60
MKLVVEV++A+DLMPKDGEGSASPF EVDF NQLS+T+T+PKNLNP WNQKL+F+ D TK
Sbjct: 1 MKLVVEVINAHDLMPKDGEGSASPFVEVDFENQLSRTRTVPKNLNPTWNQKLIFNLDATK 60
Query: 61 SHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGE 120
++ IEVS+Y+ ERR PGR+FLGRVRIPCSN+V++GEEVYQ FPLEKKWFLS VKGE
Sbjct: 61 PYHRQTIEVSVYN-ERRLTPGRNFLGRVRIPCSNIVKEGEEVYQIFPLEKKWFLSPVKGE 119
Query: 121 VGLKIYISPQSETTQPPTS--------SLPK---PKSPKNT------------TNLDSKT 157
+GLKIYI+ +S + P S LP P+ P++T + L +T
Sbjct: 120 IGLKIYIASESNSKPKPLSPVFPSEQEKLPPSTPPREPESTISDLPPPPHSIPSGLTDRT 179
Query: 158 FTALPKVEELAAVDAPKSLPEE-EISRISL---------KEDIKEPAKVTVEPIQEFLKQ 207
A EEL A D PK+ EE E+ ++ +E KE + VE +Q+ K
Sbjct: 180 LEA-DLSEELPAFDTPKASTEEAEVYYVAEARSSSVDIDQEPKKENREAVVETVQQLDKH 238
Query: 208 QVVLQPGQSVEKQPQGVPFTMHSMN--LQQGRPGDQEEYNLKDTNPQLGERWPNGGGYGG 265
QV+ S++++PQG P TMHS++ +Q P + E YNL DTN QLGERWP+ G YG
Sbjct: 239 QVLQPQTISIKRRPQGTPSTMHSVDPQVQSSHPSNDENYNLSDTNVQLGERWPSDGAYGR 298
Query: 266 RGWMSG-ERFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHF 324
RGW+SG +RFTSTYDLVEQM YLYVRVVKAKDLPPS+IT SCDPYVEVK+GNYKGRTKHF
Sbjct: 299 RGWVSGSDRFTSTYDLVEQMFYLYVRVVKAKDLPPSTITSSCDPYVEVKLGNYKGRTKHF 358
Query: 325 EKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPL 384
EK++NPEWNQVFAFSK+RIQSS+LEVF+KDK MVGRDDYLGRV FDLNEVPTRVPPDSPL
Sbjct: 359 EKKLNPEWNQVFAFSKDRIQSSVLEVFVKDKAMVGRDDYLGRVVFDLNEVPTRVPPDSPL 418
Query: 385 APQWYRLEDRRGEGKVRGQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVS 444
APQWYRLED R EGKVRG MLA+WMGTQADEAF+EAWHSDA++VYGEGVFN+RSKVY+S
Sbjct: 419 APQWYRLEDWREEGKVRGDIMLAVWMGTQADEAFSEAWHSDAATVYGEGVFNVRSKVYMS 478
Query: 445 PKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVA 504
PKLWYLRVNVIEAQD++P DRNRLP+ FVK QVG QVL TKICPT TT P WNEDLVFVA
Sbjct: 479 PKLWYLRVNVIEAQDVIPGDRNRLPDVFVKAQVGCQVLTTKICPTRTTTPFWNEDLVFVA 538
Query: 505 AEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEA 564
EPFEEQL +TVEDRVH SKDEVLGKISLP+ +FEKRLDHRPVHSRWFNLEKFGFG +E
Sbjct: 539 CEPFEEQLTITVEDRVHPSKDEVLGKISLPMTLFEKRLDHRPVHSRWFNLEKFGFGVLEG 598
Query: 565 DRRKELKFSSRVHLRVCLEGGYHVLDESTMYISDQRPTAKQLWKPPVGILEVGILGAQGL 624
DRR ELKFSSR+H+RVCLEGGYHVLDEST+Y SDQRPTA+QLWK P+GILEVGILGAQGL
Sbjct: 599 DRRNELKFSSRIHMRVCLEGGYHVLDESTLYTSDQRPTARQLWKQPIGILEVGILGAQGL 658
Query: 625 LPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDN 684
LPMKM+DGRGSTDAYC+AKYGQKWVRTRT+LDTF+PKWNEQYTWEVYDPCTVITLGVFDN
Sbjct: 659 LPMKMRDGRGSTDAYCVAKYGQKWVRTRTLLDTFSPKWNEQYTWEVYDPCTVITLGVFDN 718
Query: 685 CHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAI 744
CHLGGGEK G SA RDSRIGKVRIRLSTLEA+RIYT+ +PLLVLH HGVKKMGE+QLA+
Sbjct: 719 CHLGGGEKAPGDSAARDSRIGKVRIRLSTLEANRIYTNCHPLLVLHQHGVKKMGEIQLAV 778
Query: 745 RFTIFSLASMIYVYGHPLLPKMHYLHPFTVNQVDNLRHQAMNIVAVRLGRAEPPLRKEVV 804
RFT SLA+M+++YG PLLPKMHYLHPFTVNQ+DNLR+QAMNIVA RLGRAEPPLRKEVV
Sbjct: 779 RFTALSLANMVHIYGQPLLPKMHYLHPFTVNQIDNLRYQAMNIVAARLGRAEPPLRKEVV 838
Query: 805 EYMLDVDSHMWSMRRSKANFFRVMSLLSGMISVSRWFTDICNWRNPVTAVLVHILFLILI 864
EYMLDVDSHMWSMRRSKANFFR+MSL SGMI++ +WF+D+C W+N VT+VLVHILFLILI
Sbjct: 839 EYMLDVDSHMWSMRRSKANFFRIMSLFSGMITMGKWFSDVCLWKNHVTSVLVHILFLILI 898
Query: 865 WYPELILPTVFLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSKTH 924
WYPELILPTVFLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTS++
Sbjct: 899 WYPELILPTVFLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSRSQ 958
Query: 925 DIVRIRYDRLRSVAGRIQTVVGDIATQGERFQSLLSWRDPRATALFILFSLCAAMVLYTT 984
D+VR+RYDRLR+VAGRIQTVVGDIATQGERFQSLLSWRDPRAT+LF++FS CAA+VLY T
Sbjct: 959 DVVRMRYDRLRTVAGRIQTVVGDIATQGERFQSLLSWRDPRATSLFVVFSFCAAVVLYAT 1018
Query: 985 PFKVVALLAGLYYLRHPRFRSKLPSVPSNFFKRMPARTDSLL 1026
PF+VVAL+ GLY+LRHP+FRSK+PSVPSNFFKR+PARTDSLL
Sbjct: 1019 PFRVVALVTGLYFLRHPKFRSKMPSVPSNFFKRLPARTDSLL 1060
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487420|ref|XP_002265157.2| PREDICTED: uncharacterized protein LOC100257873 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1652 bits (4279), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 806/1052 (76%), Positives = 905/1052 (86%), Gaps = 32/1052 (3%)
Query: 1 MKLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTK 60
MKLVVE+VDA+DL+P+DGEGSASPF EVDF NQ S+T T+PKNLNPVWNQKLLF+FDQ K
Sbjct: 1 MKLVVEIVDAHDLLPRDGEGSASPFVEVDFENQRSRTTTVPKNLNPVWNQKLLFNFDQAK 60
Query: 61 SHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGE 120
+H+H IEV IYH ERR I R FLGR RIPCS +V+KGEEVYQ F LEKK F SS+KGE
Sbjct: 61 NHHHQTIEVCIYH-ERRQISSRAFLGRARIPCSTVVKKGEEVYQTFQLEKKRFFSSIKGE 119
Query: 121 VGLKIYISPQSETTQPPTS----------------------SLPKPKSPKNTTNLDSKTF 158
VGLKIY+S ++E + P S S+P P S +N+
Sbjct: 120 VGLKIYLSSETEPSSPAPSSSPPPPSSPPPSSENRNLIHNPSIPLPISEVPVSNI----L 175
Query: 159 TALPKVEELAAVDAPKS-LPEEEISRISLKEDIKEP---AKVTVEPIQEFLKQQVVLQPG 214
+ P + ++ ++ S +PE E R S++E +E +V VE K QV+ QP
Sbjct: 176 NSSPSITRVSLIEKSSSPIPEAESPRSSVEEPKEEIKEPVEVRVEANPHIYKYQVLQQPA 235
Query: 215 QSVEKQPQGVPFTMHSMNLQQGRPGDQEEYNLKDTNPQLGERWPNGGGYGGRGWMSGERF 274
SVEK PQG+ TMH N P Q++YNLK+ +PQLGERWP GG YGGRGWMSGERF
Sbjct: 236 ISVEKGPQGISSTMHQAN-PDIHPSPQDDYNLKEMDPQLGERWPGGGVYGGRGWMSGERF 294
Query: 275 TSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQ 334
+TYDLVEQM YLYVRVVKAKDLPP ++TGSCDPYVEVK+GNYKGRT+HFEK+MNPEWNQ
Sbjct: 295 ATTYDLVEQMYYLYVRVVKAKDLPPGALTGSCDPYVEVKLGNYKGRTRHFEKKMNPEWNQ 354
Query: 335 VFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDR 394
VFAFSK+RIQSS LEVF+KDKEMVGRDDYLGRV FD+NEVPTRVPPDSPLAPQWYRLEDR
Sbjct: 355 VFAFSKDRIQSSSLEVFVKDKEMVGRDDYLGRVVFDMNEVPTRVPPDSPLAPQWYRLEDR 414
Query: 395 RGEGKVRGQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVSPKLWYLRVNV 454
RGEGKVRG MLA+W+GTQADEAF+EAWHSDA+SV+GEGV +IRSKVYVSPKLWYLRVNV
Sbjct: 415 RGEGKVRGNIMLAVWLGTQADEAFSEAWHSDAASVHGEGVSSIRSKVYVSPKLWYLRVNV 474
Query: 455 IEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFL 514
IEAQDI PNDR+R+PE FVK QVG+QVL++KICPT TTNPLWNEDLVFVAAEPFE+QL L
Sbjct: 475 IEAQDIQPNDRSRVPEVFVKAQVGSQVLRSKICPTRTTNPLWNEDLVFVAAEPFEDQLVL 534
Query: 515 TVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFSS 574
TVEDRVH SKD+VLG++S+PL FEKRLDHRPVHS WF+LEKFGFG +EADRRKELKFSS
Sbjct: 535 TVEDRVHPSKDDVLGRVSMPLTAFEKRLDHRPVHSTWFHLEKFGFGTLEADRRKELKFSS 594
Query: 575 RVHLRVCLEGGYHVLDESTMYISDQRPTAKQLWKPPVGILEVGILGAQGLLPMKMKDGRG 634
R+H+RVCLEGGYHVLDESTMYISDQRPTA+QLWK P+GILEVGILGAQGLLPMKMKD RG
Sbjct: 595 RIHVRVCLEGGYHVLDESTMYISDQRPTARQLWKQPIGILEVGILGAQGLLPMKMKDSRG 654
Query: 635 STDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEKQN 694
STDAYC+A+YGQKWVRTRTI+DTF+PKWNEQYTWEVYDPCTVITLGVFDNCHLGG EK N
Sbjct: 655 STDAYCVARYGQKWVRTRTIIDTFSPKWNEQYTWEVYDPCTVITLGVFDNCHLGGAEKLN 714
Query: 695 GSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTIFSLASM 754
G AVRDSRIGKVRIRLSTLE+HRIY HSYPLLVL P GVKKMGELQLAIRFT SLA+M
Sbjct: 715 GGGAVRDSRIGKVRIRLSTLESHRIYIHSYPLLVLQPTGVKKMGELQLAIRFTSLSLANM 774
Query: 755 IYVYGHPLLPKMHYLHPFTVNQVDNLRHQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHM 814
IY YGHPLLPKMHYLHP TVNQVD+LR+QAMNIVA RLGRAEPPLRKEVVEYMLDVDSHM
Sbjct: 775 IYAYGHPLLPKMHYLHPLTVNQVDSLRYQAMNIVATRLGRAEPPLRKEVVEYMLDVDSHM 834
Query: 815 WSMRRSKANFFRVMSLLSGMISVSRWFTDICNWRNPVTAVLVHILFLILIWYPELILPTV 874
WSMRRSKANFFR+MSLLSG+I++SRWF ++C+W+NP+T+VLVHILFLILIWYPELILPT+
Sbjct: 835 WSMRRSKANFFRIMSLLSGVITMSRWFGNVCHWKNPITSVLVHILFLILIWYPELILPTI 894
Query: 875 FLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSKTHDIVRIRYDRL 934
FLYMFLIG+WNYRFRPRHPPHMDTKLSWAEAV PDELDEEFDTFPTS++ D V +RYDRL
Sbjct: 895 FLYMFLIGIWNYRFRPRHPPHMDTKLSWAEAVQPDELDEEFDTFPTSRSQDRVYMRYDRL 954
Query: 935 RSVAGRIQTVVGDIATQGERFQSLLSWRDPRATALFILFSLCAAMVLYTTPFKVVALLAG 994
RSVAGRIQTVVGD+ATQGERFQSLLSWRDPRAT+LFI+F LC A+VLY TPF+ VAL+AG
Sbjct: 955 RSVAGRIQTVVGDLATQGERFQSLLSWRDPRATSLFIMFCLCTALVLYMTPFRAVALVAG 1014
Query: 995 LYYLRHPRFRSKLPSVPSNFFKRMPARTDSLL 1026
LY LRHPRFRSKLPS+P+NFFKR+P RTDSLL
Sbjct: 1015 LYMLRHPRFRSKLPSIPNNFFKRLPPRTDSLL 1046
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449463777|ref|XP_004149608.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1635 bits (4234), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 793/1062 (74%), Positives = 906/1062 (85%), Gaps = 46/1062 (4%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKS 61
+LVVEV+DA+DLMPKDGEGSASPF EVDF N +S+TKT+PK+L+P+WNQKL FDFD+T++
Sbjct: 3 QLVVEVIDAHDLMPKDGEGSASPFVEVDFQNHISRTKTVPKSLDPIWNQKLSFDFDETQN 62
Query: 62 HNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEV 121
H + I++S+YH E+R I GR FLGRVRI CSN+ ++GEE YQRF LE WFLS+VKGE+
Sbjct: 63 HQYQTIDISVYH-EKRLIEGRSFLGRVRISCSNIAKEGEETYQRFHLENNWFLSAVKGEI 121
Query: 122 GLKIYISPQSETTQPPTSSLPKPKSPKNTTNLDSKTFTALPKVEELAAVDAPKSLPEEEI 181
GLKIYISP P S P+ P + ++ + P LAAV +P +I
Sbjct: 122 GLKIYISP-------PKKSPINPREPPISNPPPTRVVSNPPISSALAAVTKADGVPVSDI 174
Query: 182 SRISLKEDIK-EPAK--VTVEPIQEFL--------------------------KQQVVLQ 212
K+ +K P+K + P+ EF KQQ + +
Sbjct: 175 QEEPKKDVLKISPSKDSNSTLPVVEFRIEDPAKEPKEEIEEPIEARQETTQLHKQQTMQR 234
Query: 213 PGQSVEKQPQG--------VPFTMHSMNLQQGRPGDQEEYNLKDTNPQLGERWPNGGGYG 264
P V+++PQG +P TM++ N + +Q++Y ++DTNPQLGE+WPNGGGYG
Sbjct: 235 PRIVVQRRPQGASSSMNRSIPPTMNTSN-SEANSSNQDDYEIRDTNPQLGEQWPNGGGYG 293
Query: 265 GRGWMSGERFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHF 324
GRGW+SGER TSTYDLVEQM YLYVRV+KA+DLP SSITG CDPYVEVK+GNYKGRTKHF
Sbjct: 294 GRGWLSGERHTSTYDLVEQMFYLYVRVMKARDLPSSSITGGCDPYVEVKLGNYKGRTKHF 353
Query: 325 EKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPL 384
+K+ NPEWNQVFAFSKERIQSS LEVF+KDKEM+GRDDYLGRV FDLNEVPTRVPPDSPL
Sbjct: 354 DKKQNPEWNQVFAFSKERIQSSALEVFVKDKEMLGRDDYLGRVVFDLNEVPTRVPPDSPL 413
Query: 385 APQWYRLEDRRGEGKVRGQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVS 444
APQWYRLEDRRG GKVRG+ M+A+WMGTQADEAF EAWHSDA+SV+GEGV N+RSKVYVS
Sbjct: 414 APQWYRLEDRRGTGKVRGEIMVAVWMGTQADEAFPEAWHSDAASVFGEGVHNVRSKVYVS 473
Query: 445 PKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVA 504
PKLWYLR+NVIEAQD++PNDRNRLP+ FVKVQVGNQVL+TKI T TTNP+WNEDLVFV
Sbjct: 474 PKLWYLRLNVIEAQDVIPNDRNRLPDLFVKVQVGNQVLRTKISSTSTTNPVWNEDLVFVV 533
Query: 505 AEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEA 564
AEPFEEQL +T+EDRVH SK++VLG+ISLPL F+KRLD+RPVHSRWFNLEK+GFG +EA
Sbjct: 534 AEPFEEQLVITIEDRVHPSKEDVLGQISLPLDTFDKRLDYRPVHSRWFNLEKYGFGVLEA 593
Query: 565 DRRKELKFSSRVHLRVCLEGGYHVLDESTMYISDQRPTAKQLWKPPVGILEVGILGAQGL 624
DRRKELKFSSR+HLR LEGGYHVLDEST+YISDQRPTAKQLWKPPVGILEVGIL AQGL
Sbjct: 594 DRRKELKFSSRIHLRASLEGGYHVLDESTLYISDQRPTAKQLWKPPVGILEVGILSAQGL 653
Query: 625 LPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDN 684
LPMKMKDGRGSTDAYCIAKYGQKWVRTRTIL+TF+PKWNEQYTWEVYDPCTVITLGVFDN
Sbjct: 654 LPMKMKDGRGSTDAYCIAKYGQKWVRTRTILNTFSPKWNEQYTWEVYDPCTVITLGVFDN 713
Query: 685 CHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAI 744
CHLGGGEK NGS+ +DSRIGKVRIRLSTLEAH++YTHSYPLLVLHP+GVKKMGELQLA+
Sbjct: 714 CHLGGGEKHNGSNGAKDSRIGKVRIRLSTLEAHKLYTHSYPLLVLHPNGVKKMGELQLAV 773
Query: 745 RFTIFSLASMIYVYGHPLLPKMHYLHPFTVNQVDNLRHQAMNIVAVRLGRAEPPLRKEVV 804
RFT SLA+MIY+YG+PLLPKMHYL PFTVNQ++NLR+QAMNIVA RL RAEPPLRKEV+
Sbjct: 774 RFTTLSLANMIYIYGNPLLPKMHYLQPFTVNQIENLRYQAMNIVATRLSRAEPPLRKEVI 833
Query: 805 EYMLDVDSHMWSMRRSKANFFRVMSLLSGMISVSRWFTDICNWRNPVTAVLVHILFLILI 864
EYMLDVDSH+WSMRRSKANFFR+MSLLSGMISV+RWF ++CNWRNP+T+VLVHILFLILI
Sbjct: 834 EYMLDVDSHVWSMRRSKANFFRIMSLLSGMISVTRWFREVCNWRNPITSVLVHILFLILI 893
Query: 865 WYPELILPTVFLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSKTH 924
WYPELILPTVFLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAV+PDELDEEFDTFPTSK +
Sbjct: 894 WYPELILPTVFLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAVNPDELDEEFDTFPTSKPN 953
Query: 925 DIVRIRYDRLRSVAGRIQTVVGDIATQGERFQSLLSWRDPRATALFILFSLCAAMVLYTT 984
D+VR+RYDRLRSVAGRIQTVVGDIATQGER QSLLSWRDPRAT+LFI+F LC A VLY T
Sbjct: 954 DLVRLRYDRLRSVAGRIQTVVGDIATQGERVQSLLSWRDPRATSLFIVFCLCTAAVLYAT 1013
Query: 985 PFKVVALLAGLYYLRHPRFRSKLPSVPSNFFKRMPARTDSLL 1026
PF+VVAL+AGLY LRHP+FRSKLPSVP NFFKR+P +TDSLL
Sbjct: 1014 PFRVVALVAGLYCLRHPKFRSKLPSVPGNFFKRLPPQTDSLL 1055
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449501571|ref|XP_004161406.1| PREDICTED: LOW QUALITY PROTEIN: multiple C2 and transmembrane domain-containing protein 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1632 bits (4226), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 792/1062 (74%), Positives = 905/1062 (85%), Gaps = 46/1062 (4%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKS 61
+LVVEV+DA+DLMPKDGEGSASPF EVDF N +S+TKT+PK+L+P+WNQKL FDFD+T++
Sbjct: 3 QLVVEVIDAHDLMPKDGEGSASPFVEVDFQNHISRTKTVPKSLDPIWNQKLSFDFDETQN 62
Query: 62 HNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEV 121
H + I++S+YH E+R I GR FLGRVRI CSN+ ++GEE YQRF LE WFLS+VKGE+
Sbjct: 63 HQYQTIDISVYH-EKRLIEGRSFLGRVRISCSNIAKEGEETYQRFHLENNWFLSAVKGEI 121
Query: 122 GLKIYISPQSETTQPPTSSLPKPKSPKNTTNLDSKTFTALPKVEELAAVDAPKSLPEEEI 181
GLKIYISP P S P+ P + ++ + P LAAV +P +I
Sbjct: 122 GLKIYISP-------PKKSPINPREPPISNPPPTRVVSNPPISSALAAVTKADGVPVSDI 174
Query: 182 SRISLKEDIK-EPAK--VTVEPIQEFL--------------------------KQQVVLQ 212
K+ +K P+K + P+ EF KQQ + +
Sbjct: 175 QEEPKKDVLKISPSKDSNSTLPVVEFRIEDPAKEPKEEIEEPIEARQETTQLHKQQTMQR 234
Query: 213 PGQSVEKQPQG--------VPFTMHSMNLQQGRPGDQEEYNLKDTNPQLGERWPNGGGYG 264
P V+++PQG +P TM++ N + +Q++Y ++DTNPQLGE+WPNGGGYG
Sbjct: 235 PRIVVQRRPQGASSSMNRSIPPTMNTSN-SEANSSNQDDYEIRDTNPQLGEQWPNGGGYG 293
Query: 265 GRGWMSGERFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHF 324
GRGW+SGER TSTYDLVEQM YLYVRV+KA+DLP SSITG CDPYVEVK+GNYKGRTKHF
Sbjct: 294 GRGWLSGERHTSTYDLVEQMFYLYVRVMKARDLPSSSITGGCDPYVEVKLGNYKGRTKHF 353
Query: 325 EKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPL 384
+K+ NPEWNQVFAFSKERIQSS LEVF+KDKEM+GRDDYLGRV FDLNEVPTRVPPDSPL
Sbjct: 354 DKKQNPEWNQVFAFSKERIQSSALEVFVKDKEMLGRDDYLGRVVFDLNEVPTRVPPDSPL 413
Query: 385 APQWYRLEDRRGEGKVRGQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVS 444
APQWYRLEDRRG GKVRG+ M+A+WMGTQADEAF EAWHSDA+SV+GEGV N+RSKVYVS
Sbjct: 414 APQWYRLEDRRGTGKVRGEIMVAVWMGTQADEAFPEAWHSDAASVFGEGVHNVRSKVYVS 473
Query: 445 PKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVA 504
PKLWYLR+NVIEAQD++PNDRNRLP+ FVKVQVGNQVL+TKI T TTNP+WNEDLVFV
Sbjct: 474 PKLWYLRLNVIEAQDVIPNDRNRLPDLFVKVQVGNQVLRTKISSTSTTNPVWNEDLVFVV 533
Query: 505 AEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEA 564
AEPFEEQL +T+EDRVH SK++VLG+ISLPL F+KRLD+RPVHSRWFNLEK+GFG +EA
Sbjct: 534 AEPFEEQLVITIEDRVHPSKEDVLGQISLPLDTFDKRLDYRPVHSRWFNLEKYGFGVLEA 593
Query: 565 DRRKELKFSSRVHLRVCLEGGYHVLDESTMYISDQRPTAKQLWKPPVGILEVGILGAQGL 624
DRRKELKFSSR+HLR LEGGYHVLDEST+YISDQRPTAKQLWKPPVGILEVGIL AQGL
Sbjct: 594 DRRKELKFSSRIHLRASLEGGYHVLDESTLYISDQRPTAKQLWKPPVGILEVGILSAQGL 653
Query: 625 LPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDN 684
LPMKMKDGRGSTDAYCIAKYGQKWVRTRTIL+TF+PKWNEQYTWEVYDPCTVITLGVFDN
Sbjct: 654 LPMKMKDGRGSTDAYCIAKYGQKWVRTRTILNTFSPKWNEQYTWEVYDPCTVITLGVFDN 713
Query: 685 CHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAI 744
CHLGGGEK NGS+ +DSRIGKVRIRLSTLEAH++YTHSYPLLVLHP+GVKKMGELQLA+
Sbjct: 714 CHLGGGEKHNGSNGAKDSRIGKVRIRLSTLEAHKLYTHSYPLLVLHPNGVKKMGELQLAV 773
Query: 745 RFTIFSLASMIYVYGHPLLPKMHYLHPFTVNQVDNLRHQAMNIVAVRLGRAEPPLRKEVV 804
RFT SLA+MIY+YG+PLLPKMHYL PFTVNQ++NLR+QAMNIVA RL RAEPPLRKEV+
Sbjct: 774 RFTTLSLANMIYIYGNPLLPKMHYLQPFTVNQIENLRYQAMNIVATRLSRAEPPLRKEVI 833
Query: 805 EYMLDVDSHMWSMRRSKANFFRVMSLLSGMISVSRWFTDICNWRNPVTAVLVHILFLILI 864
EYMLDVDSH+WSMRRSKANFFR+MSLLSGMISV+RWF ++CNWRNP+T+VLVHILFLILI
Sbjct: 834 EYMLDVDSHVWSMRRSKANFFRIMSLLSGMISVTRWFREVCNWRNPITSVLVHILFLILI 893
Query: 865 WYPELILPTVFLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSKTH 924
WYPELILPTVFLYMFLIGLWNYRFRPRH PHMDTKLSWAEAV+PDELDEEFDTFPTSK +
Sbjct: 894 WYPELILPTVFLYMFLIGLWNYRFRPRHXPHMDTKLSWAEAVNPDELDEEFDTFPTSKPN 953
Query: 925 DIVRIRYDRLRSVAGRIQTVVGDIATQGERFQSLLSWRDPRATALFILFSLCAAMVLYTT 984
D+VR+RYDRLRSVAGRIQTVVGDIATQGER QSLLSWRDPRAT+LFI+F LC A VLY T
Sbjct: 954 DLVRLRYDRLRSVAGRIQTVVGDIATQGERVQSLLSWRDPRATSLFIVFCLCTAAVLYAT 1013
Query: 985 PFKVVALLAGLYYLRHPRFRSKLPSVPSNFFKRMPARTDSLL 1026
PF+VVAL+AGLY LRHP+FRSKLPSVP NFFKR+P +TDSLL
Sbjct: 1014 PFRVVALVAGLYCLRHPKFRSKLPSVPGNFFKRLPPQTDSLL 1055
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297791937|ref|XP_002863853.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297309688|gb|EFH40112.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1501 bits (3885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 739/1056 (69%), Positives = 861/1056 (81%), Gaps = 54/1056 (5%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTK- 60
KLVV VVDA LMP+DG+GSASPF EVDFLNQLSKT+T+PK+LNPVWNQKL FD+DQ+
Sbjct: 6 KLVVHVVDAQYLMPRDGQGSASPFVEVDFLNQLSKTRTVPKSLNPVWNQKLFFDYDQSVI 65
Query: 61 SHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGE 120
SH++ IEVS+YH ERRPIPGR FLGRV+IP SN+V K ++VYQRF LEKKW LSSVKGE
Sbjct: 66 SHHNQHIEVSVYH-ERRPIPGRSFLGRVKIPLSNIVYKDDQVYQRFTLEKKWLLSSVKGE 124
Query: 121 VGLKIYISP--QSETTQPPTSSLPKPKSPKNTTNLDSKTFTALPKVEELAAVDAPKSLPE 178
+GLK YIS Q +T PP S P SP + ++ TA + + D+ KS
Sbjct: 125 IGLKFYISSSEQEKTFPPPLHSKPY-TSPTQASASGTEEDTAHSETD-----DSLKSFAS 178
Query: 179 EEISRISLKEDIKEPAKVTV---------EPIQEFLKQQVVLQPG--QSVEKQPQGVPF- 226
E +ED+ + A V EP Q+ +Q+V +P S+ + + P
Sbjct: 179 AE------QEDLPDSASECVKGKRTEEVKEPDQKLHRQEVFARPAPMHSIRLRSRENPHE 232
Query: 227 ----------TMHSMN---LQQGRPGDQEEYNLKDTNPQLGERWPNGGGYGGRGWMSGER 273
+H N LQ D +++ ++D N LGERWPN +GER
Sbjct: 233 AKKPLSRGANQLHPQNTNHLQSYVETDPDDFKVRDMNLDLGERWPNPN--------AGER 284
Query: 274 FTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMN-PEW 332
FT TYDLVEQM YLYVRVVKAK+LPP SITG CDPYVEVK+GNYKGRTKHF+++ PEW
Sbjct: 285 FTGTYDLVEQMFYLYVRVVKAKELPPGSITGGCDPYVEVKLGNYKGRTKHFDRKTTLPEW 344
Query: 333 NQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLE 392
NQVFAF+KERIQSS+LEVF+KDKE +GRDD LG+V FDLNE+PTRVPP+SPLAPQWYRLE
Sbjct: 345 NQVFAFTKERIQSSVLEVFVKDKETLGRDDILGKVMFDLNEIPTRVPPNSPLAPQWYRLE 404
Query: 393 DRRGEGKV-RGQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVSPKLWYLR 451
D RGEGKV RG+ M+A+WMGTQADEAF EAWH+D++SV+GEGVFNIRSKVYVSPKLWYLR
Sbjct: 405 DWRGEGKVVRGEIMIAVWMGTQADEAFPEAWHADSASVHGEGVFNIRSKVYVSPKLWYLR 464
Query: 452 VNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQ 511
VNVIEAQD++P+DRNRLP+ FVK VG Q LKT ICP TTNPLWNEDLVFV AEPFEEQ
Sbjct: 465 VNVIEAQDMIPSDRNRLPDVFVKANVGMQTLKTSICPMKTTNPLWNEDLVFVVAEPFEEQ 524
Query: 512 LFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEAD-RRKEL 570
L ++VEDRVH SKDEV+GKI+LP+++FEKRLDHRPVHSRWFNL+K+G G +E D RRKE
Sbjct: 525 LVISVEDRVHTSKDEVIGKITLPMNVFEKRLDHRPVHSRWFNLDKYGTGVLEPDSRRKEH 584
Query: 571 KFSSRVHLRVCLEGGYHVLDESTMYISDQRPTAKQLWKPPVGILEVGILGAQGLLPMKMK 630
KFSSR+HLR+CLEGGYHV+DESTMYISD RPTA+QLWK PVG+LE+GILGA GL+PMK+K
Sbjct: 585 KFSSRIHLRICLEGGYHVMDESTMYISDTRPTARQLWKQPVGMLEIGILGANGLVPMKLK 644
Query: 631 DGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGG 690
DGRGST+AYC+AKYGQKWVRTRTILDT +P+WNEQYTWEVYDPCTVITLGVFDN HLG
Sbjct: 645 DGRGSTNAYCVAKYGQKWVRTRTILDTLSPRWNEQYTWEVYDPCTVITLGVFDNNHLGSS 704
Query: 691 EKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTIFS 750
Q+G++ +DSRIGKVRIRLSTLEAH+IYTHS+PLLVL PHG+KK G+LQL++RFT S
Sbjct: 705 --QSGTADSKDSRIGKVRIRLSTLEAHKIYTHSFPLLVLQPHGLKKTGDLQLSVRFTTLS 762
Query: 751 LASMIYVYGHPLLPKMHYLHPFTVNQVDNLRHQAMNIVAVRLGRAEPPLRKEVVEYMLDV 810
L ++IY YGH LLPKMHYL PFTVNQVD LR+QAMNIVA RLGRAEPPLRKEVVEYMLDV
Sbjct: 763 LTNIIYNYGHTLLPKMHYLFPFTVNQVDGLRYQAMNIVATRLGRAEPPLRKEVVEYMLDV 822
Query: 811 DSHMWSMRRSKANFFRVMSLLSGMISVSRWFTDICNWRNPVTAVLVHILFLILIWYPELI 870
DSH+WSMRRSKANFFR+MSLLSG V +W D+CNWR PVT+VLV++LF IL+ YPELI
Sbjct: 823 DSHLWSMRRSKANFFRIMSLLSGYFLVGKWLEDVCNWRYPVTSVLVNVLFFILVMYPELI 882
Query: 871 LPTVFLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSKTHDIVRIR 930
LPT+FLYMF IGLWN+R RPRHPPHMD KLSWAEAV PDELDEEFDTFPTS++ ++VR+R
Sbjct: 883 LPTMFLYMFFIGLWNFRSRPRHPPHMDMKLSWAEAVGPDELDEEFDTFPTSRSQELVRLR 942
Query: 931 YDRLRSVAGRIQTVVGDIATQGERFQSLLSWRDPRATALFILFSLCAAMVLYTTPFKVVA 990
YDRLRSVAGRIQTVVGDIA+QGER QSLL WRDPRAT+LFILF L A++VLY PFK +A
Sbjct: 943 YDRLRSVAGRIQTVVGDIASQGERIQSLLIWRDPRATSLFILFCLAASVVLYAMPFKAMA 1002
Query: 991 LLAGLYYLRHPRFRSKLPSVPSNFFKRMPARTDSLL 1026
L +GLYYLRHP+FRSKLPS+PSNFFKR+P+RTDSLL
Sbjct: 1003 LASGLYYLRHPKFRSKLPSLPSNFFKRLPSRTDSLL 1038
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15238879|ref|NP_199617.1| C2 calcium/lipid-binding and phosphoribosyltransferase C-terminal domain-containing protein [Arabidopsis thaliana] gi|10177757|dbj|BAB11070.1| phosphoribosylanthranilate transferase-like protein [Arabidopsis thaliana] gi|332008232|gb|AED95615.1| C2 calcium/lipid-binding and phosphoribosyltransferase C-terminal domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1497 bits (3876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 732/1046 (69%), Positives = 861/1046 (82%), Gaps = 36/1046 (3%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKS 61
KLVV VVDA LMP+DG+GSASPF EVDFLNQLSKT+T+PK+LNPVWNQKL FD+DQ+
Sbjct: 6 KLVVHVVDAQYLMPRDGQGSASPFVEVDFLNQLSKTRTVPKSLNPVWNQKLYFDYDQSVI 65
Query: 62 HNHLR-IEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGE 120
+ H + IEVS+YH ERRPIPGR FLGRV+I N+V K ++VYQRF LEKKW LSSVKGE
Sbjct: 66 NQHNQHIEVSVYH-ERRPIPGRSFLGRVKISLCNIVYKDDQVYQRFTLEKKWLLSSVKGE 124
Query: 121 VGLKIYISPQSETTQPPTSSLPKPKSPKNTTNLDSKTFTALPKVEELAAVDAPKSLPEEE 180
+GLK YIS E P S P SP + ++ TA + E+ ++ + S EE+
Sbjct: 125 IGLKFYISSSEEDQTFPLPSKPY-TSPTQASASGTEEDTADSETED--SLKSFASAEEED 181
Query: 181 ISRISLKEDIK-EPAKVTVEPIQEFLKQQVVLQPG--QSVEKQPQGVPF----------- 226
++ S+ E ++ + ++ EP+Q+ +Q+V +P QS+ + + P
Sbjct: 182 LAD-SVSECVEGKKSEEVKEPVQKLHRQEVFARPAPMQSIRLRSRENPHEAQKPMSRGAN 240
Query: 227 TMHSMN---LQQGRPGDQEEYNLKDTNPQLGERWPNGGGYGGRGWMSGERFTSTYDLVEQ 283
+H N LQ D +++ +KD N LGERWPN +GERFT TYDLVEQ
Sbjct: 241 QLHPQNPNHLQSYGDTDLDDFKVKDMNLDLGERWPNPN--------AGERFTGTYDLVEQ 292
Query: 284 MSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMN-PEWNQVFAFSKER 342
M YLYVRVVKAK+LPP SITG CDPYVEVK+GNYKGRTK F+++ PEWNQVFAF+KER
Sbjct: 293 MFYLYVRVVKAKELPPGSITGGCDPYVEVKLGNYKGRTKIFDRKTTIPEWNQVFAFTKER 352
Query: 343 IQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKV-R 401
IQSS+LEVF+KDKE +GRDD LG+V FDLNE+PTRVPP+SPLAPQWYRLED RGEGKV R
Sbjct: 353 IQSSVLEVFVKDKETLGRDDILGKVVFDLNEIPTRVPPNSPLAPQWYRLEDWRGEGKVVR 412
Query: 402 GQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIV 461
G+ MLA+WMGTQADEAF EAWH+D++SV+GEGVFNIRSKVYVSPKLWYLRVNVIEAQD++
Sbjct: 413 GEIMLAVWMGTQADEAFPEAWHADSASVHGEGVFNIRSKVYVSPKLWYLRVNVIEAQDMI 472
Query: 462 PNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVH 521
P+DRNRLP+ FVK VG Q LKT IC TTNPLW EDLVFV AEPFEEQL ++VEDRVH
Sbjct: 473 PSDRNRLPDVFVKASVGMQTLKTSICSIKTTNPLWKEDLVFVVAEPFEEQLVISVEDRVH 532
Query: 522 ASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEAD-RRKELKFSSRVHLRV 580
SKDEV+GKI+LP+++FEKRLDHRPVHSRWFNL+K+G G +E D RRKE KFSSR+HLR+
Sbjct: 533 TSKDEVIGKITLPMNVFEKRLDHRPVHSRWFNLDKYGTGVLEPDARRKEHKFSSRIHLRI 592
Query: 581 CLEGGYHVLDESTMYISDQRPTAKQLWKPPVGILEVGILGAQGLLPMKMKDGRGSTDAYC 640
CLEGGYHV+DESTMYISD RPTA+QLWK PVG+LE+GILGA GL+PMK+KDGRGST+AYC
Sbjct: 593 CLEGGYHVMDESTMYISDTRPTARQLWKQPVGMLEIGILGANGLVPMKLKDGRGSTNAYC 652
Query: 641 IAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEKQNGSSAVR 700
+AKYGQKWVRTRTILDT +P+WNEQYTWEVYDPCTVITLGVFDN HLG Q+G++ R
Sbjct: 653 VAKYGQKWVRTRTILDTLSPRWNEQYTWEVYDPCTVITLGVFDNSHLGSA--QSGTADSR 710
Query: 701 DSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTIFSLASMIYVYGH 760
D+RIGKVRIRLSTLEAH+IYTHS+PLLVL PHG+KK G+LQ+++RFT SLA++IY YGH
Sbjct: 711 DARIGKVRIRLSTLEAHKIYTHSFPLLVLQPHGLKKTGDLQISVRFTTLSLANIIYNYGH 770
Query: 761 PLLPKMHYLHPFTVNQVDNLRHQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRS 820
PLLPKMHYL PFTVNQVD LR+QAMNIV+ RLGRAEPPLRKEVVEYMLDVDSH+WSMRRS
Sbjct: 771 PLLPKMHYLFPFTVNQVDGLRYQAMNIVSTRLGRAEPPLRKEVVEYMLDVDSHLWSMRRS 830
Query: 821 KANFFRVMSLLSGMISVSRWFTDICNWRNPVTAVLVHILFLILIWYPELILPTVFLYMFL 880
KANFFR+MSLLSG V +W D+CNWR PVT+VLV++LF IL+ YPELILPT+FLYMF
Sbjct: 831 KANFFRIMSLLSGYFLVGKWLEDVCNWRYPVTSVLVNVLFFILVMYPELILPTMFLYMFF 890
Query: 881 IGLWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSKTHDIVRIRYDRLRSVAGR 940
IGLWN+R RPRHPPHMD KLSWAEAV PDELDEEFDTFPTS++ ++VR+RYDRLRSVAGR
Sbjct: 891 IGLWNFRSRPRHPPHMDMKLSWAEAVGPDELDEEFDTFPTSRSQELVRLRYDRLRSVAGR 950
Query: 941 IQTVVGDIATQGERFQSLLSWRDPRATALFILFSLCAAMVLYTTPFKVVALLAGLYYLRH 1000
IQTVVGDIA QGER QSLLSWRDPRAT+LFILF L A++VLY PFK +AL +GLYYLRH
Sbjct: 951 IQTVVGDIAAQGERIQSLLSWRDPRATSLFILFCLAASVVLYAMPFKAIALASGLYYLRH 1010
Query: 1001 PRFRSKLPSVPSNFFKRMPARTDSLL 1026
P+FRSKLPS+PSNFFKR+P+ TDSLL
Sbjct: 1011 PKFRSKLPSLPSNFFKRLPSSTDSLL 1036
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356542393|ref|XP_003539651.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1449 bits (3750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 675/817 (82%), Positives = 748/817 (91%), Gaps = 3/817 (0%)
Query: 212 QPGQSVEKQPQGVPFTMHSMNLQQGRPGDQEEYNLKDTN-PQLGERWPNGGGYGGRGWMS 270
QP VEKQPQ P T H ++ Q D E YNL DTN QL +RWP+ YG RGW+S
Sbjct: 365 QPRILVEKQPQNTPLTTHQVSPQVPTSND-ENYNLSDTNVQQLDKRWPSDRAYGRRGWVS 423
Query: 271 G-ERFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMN 329
G +RFTSTYDLVEQM YLYVRVVKAK LPPS+IT SCDPYVEVK+GNYKGRTKHFEK++N
Sbjct: 424 GSDRFTSTYDLVEQMFYLYVRVVKAKVLPPSTITSSCDPYVEVKLGNYKGRTKHFEKKLN 483
Query: 330 PEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWY 389
PEWNQVFAFSK+RIQSS+LEVF+KDK MVGRDDYLGRV FDLNEVPTRVPPDSPLAPQWY
Sbjct: 484 PEWNQVFAFSKDRIQSSVLEVFVKDKAMVGRDDYLGRVVFDLNEVPTRVPPDSPLAPQWY 543
Query: 390 RLEDRRGEGKVRGQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVSPKLWY 449
RLED EGKVRG MLA+WMGTQADEAF+EAWHSDA++VYGEGVFNIRSKVY+SPKLWY
Sbjct: 544 RLEDWCEEGKVRGDIMLAVWMGTQADEAFSEAWHSDAATVYGEGVFNIRSKVYMSPKLWY 603
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFE 509
LRVNVIEAQD++P DRNRLPE FVK QV QVL TKICP+ TT P WNEDL+FVA EPFE
Sbjct: 604 LRVNVIEAQDVIPGDRNRLPEVFVKAQVSCQVLTTKICPSRTTTPFWNEDLIFVACEPFE 663
Query: 510 EQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKE 569
EQL +TVEDRVH SKDEVLGKISLP+ +FEKRLDHRPVHSRWFNLEKFGFG +E DRR E
Sbjct: 664 EQLTITVEDRVHPSKDEVLGKISLPMTLFEKRLDHRPVHSRWFNLEKFGFGMLEGDRRNE 723
Query: 570 LKFSSRVHLRVCLEGGYHVLDESTMYISDQRPTAKQLWKPPVGILEVGILGAQGLLPMKM 629
LKFSSR+H+R+CLEGGYHVLDEST+Y SDQRPT++QLWK P+GILEVGILGAQGLLPMKM
Sbjct: 724 LKFSSRIHMRICLEGGYHVLDESTLYTSDQRPTSRQLWKQPIGILEVGILGAQGLLPMKM 783
Query: 630 KDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGG 689
+DGRGSTDAYC+AKYGQKWVRTRT+LDTF+PKWNEQYTWEVYDPCTVITLGVFDNCHLGG
Sbjct: 784 RDGRGSTDAYCVAKYGQKWVRTRTLLDTFSPKWNEQYTWEVYDPCTVITLGVFDNCHLGG 843
Query: 690 GEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTIF 749
GEK G SA RDSRIGKVRIRLSTLEA+RIYT+S+PLLVLHPHGVKKMGELQLA+RFT
Sbjct: 844 GEKAPGGSAARDSRIGKVRIRLSTLEANRIYTNSHPLLVLHPHGVKKMGELQLAVRFTAL 903
Query: 750 SLASMIYVYGHPLLPKMHYLHPFTVNQVDNLRHQAMNIVAVRLGRAEPPLRKEVVEYMLD 809
SLA+M+++YG PLLPKMHYLHPFTVNQ+DNLR+QAMNIVAVRLG+AEPPLRKEVVEYMLD
Sbjct: 904 SLANMVHIYGQPLLPKMHYLHPFTVNQIDNLRYQAMNIVAVRLGQAEPPLRKEVVEYMLD 963
Query: 810 VDSHMWSMRRSKANFFRVMSLLSGMISVSRWFTDICNWRNPVTAVLVHILFLILIWYPEL 869
VDSHMWSMRRSKANFFR+MSL SGMI++ +W +D+C W+N VT+VLVHILFLILIWYPEL
Sbjct: 964 VDSHMWSMRRSKANFFRIMSLFSGMITMGKWCSDVCLWKNHVTSVLVHILFLILIWYPEL 1023
Query: 870 ILPTVFLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSKTHDIVRI 929
ILPT+FLYMFLIGLWNYRFRPRHPPHMDTKLSWAEA+HPDELDEEFDTFPTS++HD+VR+
Sbjct: 1024 ILPTMFLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAIHPDELDEEFDTFPTSRSHDVVRM 1083
Query: 930 RYDRLRSVAGRIQTVVGDIATQGERFQSLLSWRDPRATALFILFSLCAAMVLYTTPFKVV 989
RYDRLR+VAGRIQTVVGDIATQGERFQSLLSWRDPRAT+LF++FS CAA+VLY TPF+VV
Sbjct: 1084 RYDRLRTVAGRIQTVVGDIATQGERFQSLLSWRDPRATSLFVVFSFCAAVVLYATPFRVV 1143
Query: 990 ALLAGLYYLRHPRFRSKLPSVPSNFFKRMPARTDSLL 1026
AL+ GLY+LRHP+FRSK PS+PSNFFKR+PARTDSLL
Sbjct: 1144 ALVTGLYFLRHPKFRSKTPSIPSNFFKRLPARTDSLL 1180
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555291|ref|XP_003545967.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1419 bits (3674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 681/930 (73%), Positives = 776/930 (83%), Gaps = 72/930 (7%)
Query: 99 GEEVYQRFPLEKKWFLSSVKGEVGLKIYI-SPQSETTQPPTSSLPKPKSPKNTTNLDSKT 157
EE+Y +PLEKKWF SVKGE GLKIYI S QS + + + P+
Sbjct: 35 SEEIYHTYPLEKKWFFFSVKGESGLKIYIASSQSRSKRQNHKAYPR-------------- 80
Query: 158 FTALPKVEELAAVDAPKSLPEEEISRISLKEDIKEPAKVTVEPIQEFLKQQVVLQPGQSV 217
D + L + ++ + +P+ ++Q
Sbjct: 81 -------------DITQQLHKNQVHQ---------------QPMISIKRRQ--------- 103
Query: 218 EKQPQGVPFTMHSMNLQQGRPGDQEEYNLKDTNPQL-GERWPNGGGYGGRGWMSGERFTS 276
+G P TMHS+ Q E+YNL++T+PQL G+RWPN RGW+ GERF+S
Sbjct: 104 ----RGAPVTMHSVGPQVHPSSQDEDYNLRETDPQLGGDRWPN----ARRGWIGGERFSS 155
Query: 277 TYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVF 336
TYDLVEQM YLYVRVVKAKDL PS++T SCDPYVEVK+GNYKGRTKH EK+ NPEWNQV+
Sbjct: 156 TYDLVEQMFYLYVRVVKAKDLSPSTLTSSCDPYVEVKLGNYKGRTKHIEKKTNPEWNQVY 215
Query: 337 AFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRG 396
AFSK+RIQSS+LEV +KDKEM+GRDDY+GRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRG
Sbjct: 216 AFSKDRIQSSVLEVIVKDKEMLGRDDYIGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRG 275
Query: 397 EGKVRGQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIE 456
EGKVRG MLA+WMGTQADEAF+EAWHSDA++V GEGVFN+RSKVYVSPKLWYLRVN IE
Sbjct: 276 EGKVRGDIMLAVWMGTQADEAFSEAWHSDAAAVSGEGVFNVRSKVYVSPKLWYLRVNAIE 335
Query: 457 AQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTV 516
AQD++P+DRNRLPE FVK Q+G+QVL+TKICPT TT PLWNEDLVFVAAEPFEEQL +TV
Sbjct: 336 AQDVIPSDRNRLPEVFVKAQMGSQVLRTKICPTRTTTPLWNEDLVFVAAEPFEEQLTITV 395
Query: 517 EDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFSSRV 576
EDRVH S+DEVLGKI LPL +FEKRLDHRPVHSRWFNLEK ELKFSSR+
Sbjct: 396 EDRVHPSRDEVLGKIILPLTLFEKRLDHRPVHSRWFNLEK-----------NELKFSSRI 444
Query: 577 HLRVCLEGGYHVLDESTMYISDQRPTAKQLWKPPVGILEVGILGAQGLLPMKMKDGRGST 636
HLR+ LEGGYHVLDEST+Y SDQRPTA+QLWK P+G+LEVGILGAQGLLPMKM+DGRG+T
Sbjct: 445 HLRISLEGGYHVLDESTLYSSDQRPTARQLWKQPIGVLEVGILGAQGLLPMKMRDGRGTT 504
Query: 637 DAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEKQNGS 696
DAYC+AKYGQKWVRTRTILD F+PKWNEQYTWE+YDPCTVITLGVFDNCHLGGGEK
Sbjct: 505 DAYCVAKYGQKWVRTRTILDNFSPKWNEQYTWEIYDPCTVITLGVFDNCHLGGGEKATAG 564
Query: 697 SAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTIFSLASMIY 756
+A RDSRIGKVRIRLSTLEAHRIYTHS+PLLVLHPHGVKKMGELQLA+RFT SLA+M+Y
Sbjct: 565 TAARDSRIGKVRIRLSTLEAHRIYTHSHPLLVLHPHGVKKMGELQLAVRFTSLSLANMVY 624
Query: 757 VYGHPLLPKMHYLHPFTVNQVDNLRHQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWS 816
+YG PLLPK HYL PF VNQV+NLR+QAM+IVAVRLGRAEPPLRKEVVEYMLDVDSHMWS
Sbjct: 625 IYGQPLLPKQHYLRPFIVNQVENLRYQAMSIVAVRLGRAEPPLRKEVVEYMLDVDSHMWS 684
Query: 817 MRRSKANFFRVMSLLSGMISVSRWFTDICNWRNPVTAVLVHILFLILIWYPELILPTVFL 876
MRRSKANFFR+MSL SG+I++ +WF+ +C+W+NP+T++LVHILFLILI YPELILPT+FL
Sbjct: 685 MRRSKANFFRIMSLFSGIITMGQWFSQVCHWKNPITSILVHILFLILICYPELILPTLFL 744
Query: 877 YMFLIGLWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSKTHDIVRIRYDRLRS 936
YMFLIGLWNYRFRPRHPPHMDTKLSWAE VHPDELDEEFDTFPTS+ HD+V++RYDRLRS
Sbjct: 745 YMFLIGLWNYRFRPRHPPHMDTKLSWAEVVHPDELDEEFDTFPTSRPHDVVKMRYDRLRS 804
Query: 937 VAGRIQTVVGDIATQGERFQSLLSWRDPRATALFILFSLCAAMVLYTTPFKVVALLAGLY 996
VAGRIQTVVGDIATQGERFQSLLSWRDPRAT+ F++FSLC+A+VLY TP KVVA++ GLY
Sbjct: 805 VAGRIQTVVGDIATQGERFQSLLSWRDPRATSFFVVFSLCSAVVLYATPPKVVAMVTGLY 864
Query: 997 YLRHPRFRSKLPSVPSNFFKRMPARTDSLL 1026
YLRHP+FRSKLPSVPSNFFKR+PARTDS+L
Sbjct: 865 YLRHPKFRSKLPSVPSNFFKRLPARTDSML 894
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1026 | ||||||
| TAIR|locus:2162712 | 1036 | AT5G48060 "AT5G48060" [Arabido | 0.984 | 0.974 | 0.696 | 0.0 | |
| TAIR|locus:2095853 | 773 | AT3G57880 "AT3G57880" [Arabido | 0.727 | 0.965 | 0.727 | 3.59999944711e-318 | |
| TAIR|locus:2017627 | 776 | AT1G51570 [Arabidopsis thalian | 0.752 | 0.994 | 0.699 | 1.10000000673e-316 | |
| TAIR|locus:2182305 | 769 | AT5G12970 "AT5G12970" [Arabido | 0.724 | 0.966 | 0.719 | 2.10000000002e-313 | |
| TAIR|locus:2139727 | 1011 | AT4G11610 "AT4G11610" [Arabido | 0.761 | 0.772 | 0.635 | 2.89999999999e-313 | |
| TAIR|locus:2009492 | 1029 | AT1G22610 "AT1G22610" [Arabido | 0.763 | 0.760 | 0.613 | 5.2e-305 | |
| TAIR|locus:2020280 | 1012 | AT1G04150 "AT1G04150" [Arabido | 0.736 | 0.747 | 0.56 | 7.9e-280 | |
| TAIR|locus:2127103 | 1006 | AT4G00700 "AT4G00700" [Arabido | 0.827 | 0.843 | 0.523 | 4e-265 | |
| TAIR|locus:2098846 | 972 | AT3G61300 "AT3G61300" [Arabido | 0.589 | 0.622 | 0.565 | 8.3e-249 | |
| TAIR|locus:2019070 | 1081 | QKY "AT1G74720" [Arabidopsis t | 0.758 | 0.719 | 0.508 | 2.7e-237 |
| TAIR|locus:2162712 AT5G48060 "AT5G48060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3811 (1346.6 bits), Expect = 0., P = 0.
Identities = 729/1046 (69%), Positives = 856/1046 (81%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKS 61
KLVV VVDA LMP+DG+GSASPF EVDFLNQLSKT+T+PK+LNPVWNQKL FD+DQ+
Sbjct: 6 KLVVHVVDAQYLMPRDGQGSASPFVEVDFLNQLSKTRTVPKSLNPVWNQKLYFDYDQSVI 65
Query: 62 HNHLR-IEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGE 120
+ H + IEVS+YH ERRPIPGR FLGRV+I N+V K ++VYQRF LEKKW LSSVKGE
Sbjct: 66 NQHNQHIEVSVYH-ERRPIPGRSFLGRVKISLCNIVYKDDQVYQRFTLEKKWLLSSVKGE 124
Query: 121 VGLKIYISPQSETTQXXXXXXXXXXXXXXXXXXDSKTFTALPKVEELAAVDAPKSLPEEE 180
+GLK YIS SE Q ++ TA + E+ ++ + S EE+
Sbjct: 125 IGLKFYIS-SSEEDQTFPLPSKPYTSPTQASASGTEEDTADSETED--SLKSFASAEEED 181
Query: 181 ISRISLKEDIK-EPAKVTVEPIQEFLKQQVVLQPG--QSVE----KQPQGV--PFT---- 227
++ S+ E ++ + ++ EP+Q+ +Q+V +P QS+ + P P +
Sbjct: 182 LAD-SVSECVEGKKSEEVKEPVQKLHRQEVFARPAPMQSIRLRSRENPHEAQKPMSRGAN 240
Query: 228 -MHSMN---LQQGRPGDQEEYNLKDTNPQLGERWPNXXXXXXXXXXXXERFTSTYDLVEQ 283
+H N LQ D +++ +KD N LGERWPN ERFT TYDLVEQ
Sbjct: 241 QLHPQNPNHLQSYGDTDLDDFKVKDMNLDLGERWPNPNAG--------ERFTGTYDLVEQ 292
Query: 284 MSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMN-PEWNQVFAFSKER 342
M YLYVRVVKAK+LPP SITG CDPYVEVK+GNYKGRTK F+++ PEWNQVFAF+KER
Sbjct: 293 MFYLYVRVVKAKELPPGSITGGCDPYVEVKLGNYKGRTKIFDRKTTIPEWNQVFAFTKER 352
Query: 343 IQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKV-R 401
IQSS+LEVF+KDKE +GRDD LG+V FDLNE+PTRVPP+SPLAPQWYRLED RGEGKV R
Sbjct: 353 IQSSVLEVFVKDKETLGRDDILGKVVFDLNEIPTRVPPNSPLAPQWYRLEDWRGEGKVVR 412
Query: 402 GQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIV 461
G+ MLA+WMGTQADEAF EAWH+D++SV+GEGVFNIRSKVYVSPKLWYLRVNVIEAQD++
Sbjct: 413 GEIMLAVWMGTQADEAFPEAWHADSASVHGEGVFNIRSKVYVSPKLWYLRVNVIEAQDMI 472
Query: 462 PNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVH 521
P+DRNRLP+ FVK VG Q LKT IC TTNPLW EDLVFV AEPFEEQL ++VEDRVH
Sbjct: 473 PSDRNRLPDVFVKASVGMQTLKTSICSIKTTNPLWKEDLVFVVAEPFEEQLVISVEDRVH 532
Query: 522 ASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEAD-RRKELKFSSRVHLRV 580
SKDEV+GKI+LP+++FEKRLDHRPVHSRWFNL+K+G G +E D RRKE KFSSR+HLR+
Sbjct: 533 TSKDEVIGKITLPMNVFEKRLDHRPVHSRWFNLDKYGTGVLEPDARRKEHKFSSRIHLRI 592
Query: 581 CLEGGYHVLDESTMYISDQRPTAKQLWKPPVGILEVGILGAQGLLPMKMKDGRGSTDAYC 640
CLEGGYHV+DESTMYISD RPTA+QLWK PVG+LE+GILGA GL+PMK+KDGRGST+AYC
Sbjct: 593 CLEGGYHVMDESTMYISDTRPTARQLWKQPVGMLEIGILGANGLVPMKLKDGRGSTNAYC 652
Query: 641 IAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEKQNGSSAVR 700
+AKYGQKWVRTRTILDT +P+WNEQYTWEVYDPCTVITLGVFDN HLG Q+G++ R
Sbjct: 653 VAKYGQKWVRTRTILDTLSPRWNEQYTWEVYDPCTVITLGVFDNSHLGSA--QSGTADSR 710
Query: 701 DSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTIFSLASMIYVYGH 760
D+RIGKVRIRLSTLEAH+IYTHS+PLLVL PHG+KK G+LQ+++RFT SLA++IY YGH
Sbjct: 711 DARIGKVRIRLSTLEAHKIYTHSFPLLVLQPHGLKKTGDLQISVRFTTLSLANIIYNYGH 770
Query: 761 PLLPKMHYLHPFTVNQVDNLRHQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRS 820
PLLPKMHYL PFTVNQVD LR+QAMNIV+ RLGRAEPPLRKEVVEYMLDVDSH+WSMRRS
Sbjct: 771 PLLPKMHYLFPFTVNQVDGLRYQAMNIVSTRLGRAEPPLRKEVVEYMLDVDSHLWSMRRS 830
Query: 821 KANFFRVMSLLSGMISVSRWFTDICNWRNPVTAVLVHILFLILIWYPELILPTVFLYMFL 880
KANFFR+MSLLSG V +W D+CNWR PVT+VLV++LF IL+ YPELILPT+FLYMF
Sbjct: 831 KANFFRIMSLLSGYFLVGKWLEDVCNWRYPVTSVLVNVLFFILVMYPELILPTMFLYMFF 890
Query: 881 IGLWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSKTHDIVRIRYDRLRSVAGR 940
IGLWN+R RPRHPPHMD KLSWAEAV PDELDEEFDTFPTS++ ++VR+RYDRLRSVAGR
Sbjct: 891 IGLWNFRSRPRHPPHMDMKLSWAEAVGPDELDEEFDTFPTSRSQELVRLRYDRLRSVAGR 950
Query: 941 IQTVVGDIATQGERFQSLLSWRDPRATALFILFSLCAAMVLYTTPFKVVALLAGLYYLRH 1000
IQTVVGDIA QGER QSLLSWRDPRAT+LFILF L A++VLY PFK +AL +GLYYLRH
Sbjct: 951 IQTVVGDIAAQGERIQSLLSWRDPRATSLFILFCLAASVVLYAMPFKAIALASGLYYLRH 1010
Query: 1001 PRFRSKLPSVPSNFFKRMPARTDSLL 1026
P+FRSKLPS+PSNFFKR+P+ TDSLL
Sbjct: 1011 PKFRSKLPSLPSNFFKRLPSSTDSLL 1036
|
|
| TAIR|locus:2095853 AT3G57880 "AT3G57880" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3051 (1079.1 bits), Expect = 3.6e-318, P = 3.6e-318
Identities = 551/757 (72%), Positives = 656/757 (86%)
Query: 272 ERFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPE 331
++ TSTYDLVEQM YLYVRVVKAK+LP +TGSCDPYVEVK+GNYKG T+HFEK+ NPE
Sbjct: 26 DKLTSTYDLVEQMQYLYVRVVKAKELPGKDMTGSCDPYVEVKLGNYKGTTRHFEKKSNPE 85
Query: 332 WNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRL 391
WNQVFAFSK+RIQ+S LE +KDK+ V +DD +GRV FDLNEVP RVPPDSPLAPQWYRL
Sbjct: 86 WNQVFAFSKDRIQASFLEATVKDKDFV-KDDLIGRVVFDLNEVPKRVPPDSPLAPQWYRL 144
Query: 392 EDRRGEGKVRGQTMLAIWMGTQADEAFAEAWHSDASSVYG-EGVFNIRSKVYVSPKLWYL 450
EDR+G+ KV+G+ MLA+W GTQADEAF EAWHSDA++V G + + NIRSKVY+SPKLWYL
Sbjct: 145 EDRKGD-KVKGELMLAVWFGTQADEAFPEAWHSDAATVSGTDALANIRSKVYLSPKLWYL 203
Query: 451 RVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEE 510
RVNVIEAQD++P D+ R PE +VK VGNQ L+T++ + T NP+WNEDL+FVAAEPFEE
Sbjct: 204 RVNVIEAQDLIPTDKQRYPEVYVKAIVGNQALRTRVSQSRTINPMWNEDLMFVAAEPFEE 263
Query: 511 QLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEAD-RRKE 569
L L+VEDRV +KDEVLG+ ++PL ++R DH+PV+SRW+NLEK I D +KE
Sbjct: 264 PLILSVEDRVAPNKDEVLGRCAIPLQYLDRRFDHKPVNSRWYNLEKH----IMVDGEKKE 319
Query: 570 LKFSSRVHLRVCLEGGYHVLDESTMYISDQRPTAKQLWKPPVGILEVGILGAQGLLPMKM 629
KF+SR+H+R+CLEGGYHVLDEST Y SD RPTAKQLWKP +G+LE+GIL A GL+PMK
Sbjct: 320 TKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKPNIGVLELGILNATGLMPMKT 379
Query: 630 KDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGG 689
KDGRG+TDAYC+AKYGQKW+RTRTI+D+F P+WNEQYTWEV+DPCTV+T+GVFDNCHL G
Sbjct: 380 KDGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQYTWEVFDPCTVVTVGVFDNCHLHG 439
Query: 690 GEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTIF 749
GEK G+ +DSRIGKVRIRLSTLE R+YTHSYPLLVLHP+GVKKMGE+ LA+RFT
Sbjct: 440 GEKIGGA---KDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPNGVKKMGEIHLAVRFTCS 496
Query: 750 SLASMIYVYGHPLLPKMHYLHPFTVNQVDNLRHQAMNIVAVRLGRAEPPLRKEVVEYMLD 809
SL +M+Y+Y PLLPKMHY+HP TV+Q+DNLRHQA IV++RL RAEPPLRKEVVEYMLD
Sbjct: 497 SLLNMMYMYSQPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLTRAEPPLRKEVVEYMLD 556
Query: 810 VDSHMWSMRRSKANFFRVMSLLSGMISVSRWFTDICNWRNPVTAVLVHILFLILIWYPEL 869
V SHMWSMRRSKANFFR+M +LSG+I+V +WF ICNW+NP+T VL+H+LF+IL+ YPEL
Sbjct: 557 VGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFEQICNWKNPITTVLIHLLFIILVLYPEL 616
Query: 870 ILPTVFLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSKTHDIVRI 929
ILPT+FLY+FLIG+W YR+RPRHPPHMDT+LS A++ HPDELDEEFDTFPTS+ DIVR+
Sbjct: 617 ILPTIFLYLFLIGIWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTSRPSDIVRM 676
Query: 930 RYDRLRSVAGRIQTVVGDIATQGERFQSLLSWRDPRATALFILFSLCAAMVLYTTPFKVV 989
RYDRLRS+AGRIQTVVGD+ATQGER QSLLSWRDPRATALF+LF L AA++LY TPF+VV
Sbjct: 677 RYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVLFCLIAAVILYVTPFQVV 736
Query: 990 ALLAGLYYLRHPRFRSKLPSVPSNFFKRMPARTDSLL 1026
AL G+Y LRHPRFR KLPSVP NFF+R+PARTD +L
Sbjct: 737 ALCIGIYALRHPRFRYKLPSVPLNFFRRLPARTDCML 773
|
|
| TAIR|locus:2017627 AT1G51570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3037 (1074.1 bits), Expect = 1.1e-316, P = 1.1e-316
Identities = 554/792 (69%), Positives = 668/792 (84%)
Query: 237 RPGDQEEYNLKDTNPQLGERWPNXXXXXXXXXXXXERFTSTYDLVEQMSYLYVRVVKAKD 296
RP E+++LK+T P LG ++ T+TYDLVEQM YLYVRVVKAK+
Sbjct: 3 RP-PPEDFSLKETKPHLG-----------GGKVTGDKLTTTYDLVEQMQYLYVRVVKAKE 50
Query: 297 LPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKE 356
LP +TGSCDPYVEVK+GNY+G T+HFEK+ NPEWNQVFAFSK+R+Q+S LE +KDK+
Sbjct: 51 LPGKDLTGSCDPYVEVKLGNYRGTTRHFEKKSNPEWNQVFAFSKDRVQASYLEATVKDKD 110
Query: 357 MVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGTQADE 416
+V +DD +GRV FDLNE+P RVPPDSPLAPQWYRLED +G+ KV+G+ MLA+W GTQADE
Sbjct: 111 LV-KDDLIGRVVFDLNEIPKRVPPDSPLAPQWYRLEDGKGQ-KVKGELMLAVWFGTQADE 168
Query: 417 AFAEAWHSDASSVYG-EGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKV 475
AF EAWHSDA++V G + + NIRSKVY+SPKLWYLRVNVIEAQD++P+D+ R PE FVKV
Sbjct: 169 AFPEAWHSDAATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLIPSDKGRYPEVFVKV 228
Query: 476 QVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASKDEVLGKISLPL 535
+GNQ L+T++ + + NP+WNEDL+FV AEPFEE L L+VEDRV +KDEVLG+ ++PL
Sbjct: 229 IMGNQALRTRVSQSRSINPMWNEDLMFVVAEPFEEPLILSVEDRVAPNKDEVLGRCAVPL 288
Query: 536 HIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFSSRVHLRVCLEGGYHVLDESTMY 595
+KR D+RPV+SRWFNLEK +E +KE+KF+S++H+R+CLEGGYHVLDEST Y
Sbjct: 289 QYLDKRFDYRPVNSRWFNLEKHVI--MEGGEKKEIKFASKIHMRICLEGGYHVLDESTHY 346
Query: 596 ISDQRPTAKQLWKPPVGILEVGILGAQGLLPMKMKDG-RGSTDAYCIAKYGQKWVRTRTI 654
SD RPTAKQLWKP +G+LE+G+L A GL+PMK K+G RG+TDAYC+AKYGQKW+RTRTI
Sbjct: 347 SSDLRPTAKQLWKPNIGVLELGVLNATGLMPMKAKEGGRGTTDAYCVAKYGQKWIRTRTI 406
Query: 655 LDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTL 714
+D+F P+WNEQYTWEV+DPCTV+T+GVFDNCHL GG+K NG +DSRIGKVRIRLSTL
Sbjct: 407 IDSFTPRWNEQYTWEVFDPCTVVTVGVFDNCHLHGGDKNNGGG--KDSRIGKVRIRLSTL 464
Query: 715 EAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTIFSLASMIYVYGHPLLPKMHYLHPFTV 774
EA R+YTHSYPLLVLHP GVKKMGE+ LA+RFT SL +M+Y+Y PLLPKMHYLHP TV
Sbjct: 465 EADRVYTHSYPLLVLHPSGVKKMGEIHLAVRFTCSSLLNMMYMYSMPLLPKMHYLHPLTV 524
Query: 775 NQVDNLRHQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRVMSLLSGM 834
+Q+DNLRHQA IV+ RL RAEPPLRKEVVEYMLDV SHMWSMRRSKANFFR+M +LSG+
Sbjct: 525 SQLDNLRHQATQIVSTRLTRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGI 584
Query: 835 ISVSRWFTDICNWRNPVTAVLVHILFLILIWYPELILPTVFLYMFLIGLWNYRFRPRHPP 894
I+V +WF IC W+NP+T VL+HILF+IL+ YPELILPT+FLY+FLIG+W YR+RPRHPP
Sbjct: 585 IAVGKWFEQICVWKNPITTVLIHILFIILVIYPELILPTIFLYLFLIGVWYYRWRPRHPP 644
Query: 895 HMDTKLSWAEAVHPDELDEEFDTFPTSKTHDIVRIRYDRLRSVAGRIQTVVGDIATQGER 954
HMDT+LS A++ HPDELDEEFDTFPTS+ DIVR+RYDRLRS+AGRIQTVVGD+ATQGER
Sbjct: 645 HMDTRLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGER 704
Query: 955 FQSLLSWRDPRATALFILFSLCAAMVLYTTPFKVVALLAGLYYLRHPRFRSKLPSVPSNF 1014
FQSLLSWRDPRATALF+LF L AA++LY TPF+VVA GLY LRHPR R KLPSVP NF
Sbjct: 705 FQSLLSWRDPRATALFVLFCLIAAVILYITPFQVVAFAIGLYVLRHPRLRYKLPSVPLNF 764
Query: 1015 FKRMPARTDSLL 1026
F+R+PARTD +L
Sbjct: 765 FRRLPARTDCML 776
|
|
| TAIR|locus:2182305 AT5G12970 "AT5G12970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3006 (1063.2 bits), Expect = 2.1e-313, P = 2.1e-313
Identities = 543/755 (71%), Positives = 653/755 (86%)
Query: 272 ERFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPE 331
++ STYDLVEQM YLYVRVVKAK+LP +TGSCDPYVEVK+GNY+G TKHFEKR NPE
Sbjct: 27 DKLCSTYDLVEQMHYLYVRVVKAKELPGKDVTGSCDPYVEVKLGNYRGMTKHFEKRSNPE 86
Query: 332 WNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRL 391
W QVFAFSKERIQ+S+LEV +KDK++V DD +GR+ FDLNE+P RVPPDSPLAPQWYRL
Sbjct: 87 WKQVFAFSKERIQASILEVVVKDKDVV-LDDLIGRIMFDLNEIPKRVPPDSPLAPQWYRL 145
Query: 392 EDRRGEGKVRGQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVSPKLWYLR 451
EDR G KV+G+ MLA+WMGTQADEAF++AWHSDA++V EGV +IRSKVY+SPKLWY+R
Sbjct: 146 EDRHGR-KVKGELMLAVWMGTQADEAFSDAWHSDAATVGPEGVTHIRSKVYLSPKLWYVR 204
Query: 452 VNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQ 511
VNVIEAQD++P+D+ + PE +VK +GNQ L+T+I T T NP+WNEDL+FV AEPFEE
Sbjct: 205 VNVIEAQDLIPHDKTKFPEVYVKAMLGNQTLRTRISQTKTLNPMWNEDLMFVVAEPFEEA 264
Query: 512 LFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKELK 571
L L VEDRV +KDE LG+ ++PL ++RLDHRP++SRWFNLEK +E ++ KE+K
Sbjct: 265 LILAVEDRVAPNKDETLGRCAIPLQNVQRRLDHRPLNSRWFNLEKHIM--VEGEQ-KEIK 321
Query: 572 FSSRVHLRVCLEGGYHVLDESTMYISDQRPTAKQLWKPPVGILEVGILGAQGLLPMKMKD 631
F+SR+HLR+ LEGGYHVLDEST Y SD RPTAKQLWKP +G+LEVGI+ A GL+PMK KD
Sbjct: 322 FASRIHLRIFLEGGYHVLDESTHYSSDLRPTAKQLWKPSIGLLEVGIISAHGLMPMKSKD 381
Query: 632 GRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGE 691
G+G+TDAYC+AKYGQKW+RTRTI+D+F PKWNEQYTWEV+D CTVIT G FDN H+ GG
Sbjct: 382 GKGTTDAYCVAKYGQKWIRTRTIVDSFTPKWNEQYTWEVFDTCTVITFGAFDNGHIPGG- 440
Query: 692 KQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTIFSL 751
+G +D RIGKVRIRLSTLEA RIYTHSYPLLV HP G+KK GE+QLA+RFT SL
Sbjct: 441 --SG----KDLRIGKVRIRLSTLEADRIYTHSYPLLVFHPSGIKKTGEIQLAVRFTCLSL 494
Query: 752 ASMIYVYGHPLLPKMHYLHPFTVNQVDNLRHQAMNIVAVRLGRAEPPLRKEVVEYMLDVD 811
+M+++Y PLLPKMHY+HP +V Q+D+LRHQAMNIV+ RL RAEPPLRKE+VEYMLDVD
Sbjct: 495 INMLHMYSQPLLPKMHYIHPLSVLQLDSLRHQAMNIVSARLNRAEPPLRKEIVEYMLDVD 554
Query: 812 SHMWSMRRSKANFFRVMSLLSGMISVSRWFTDICNWRNPVTAVLVHILFLILIWYPELIL 871
SHMWSMRRSKANFFR+M++LSG+I+V +WF ICNWRNP+T +L+H+LF+IL+ YPELIL
Sbjct: 555 SHMWSMRRSKANFFRIMNVLSGLIAVGKWFDQICNWRNPITTILIHVLFIILVLYPELIL 614
Query: 872 PTVFLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSKTHDIVRIRY 931
PTVFLY+FLIG+WN+R+RPRHPPHMDT+LS A+AVHPDELDEEFDTFPTS++ +IVR+RY
Sbjct: 615 PTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHADAVHPDELDEEFDTFPTSRSSEIVRMRY 674
Query: 932 DRLRSVAGRIQTVVGDIATQGERFQSLLSWRDPRATALFILFSLCAAMVLYTTPFKVVAL 991
DRLRS+ GR+QTV+GD+ATQGERF SLLSWRDPRAT LF+LF L AA+VLY TPF+VVAL
Sbjct: 675 DRLRSIGGRVQTVIGDLATQGERFLSLLSWRDPRATTLFVLFCLIAAIVLYVTPFQVVAL 734
Query: 992 LAGLYYLRHPRFRSKLPSVPSNFFKRMPARTDSLL 1026
LAG+Y LRHPRFR KLPSVP N F+R+PAR+DSLL
Sbjct: 735 LAGIYVLRHPRFRHKLPSVPLNLFRRLPARSDSLL 769
|
|
| TAIR|locus:2139727 AT4G11610 "AT4G11610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2780 (983.7 bits), Expect = 2.9e-313, Sum P(2) = 2.9e-313
Identities = 510/802 (63%), Positives = 647/802 (80%)
Query: 228 MHSMNLQQGRPGDQEEYNLKDTNPQLGERWPNXXXXXXXXXXXXERFTSTYDLVEQMSYL 287
+H+ ++ +P D + LK+T+P LG + TSTYDLVE+M +L
Sbjct: 228 VHAHSIASAQPAD---FALKETSPHLG----GGRVVGGRVIHKDKTATSTYDLVERMYFL 280
Query: 288 YVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSM 347
YVRVVKA++LP ITGS DP+VEV++GNYKG T+HFEKR +PEWNQVFAF+KER+Q+S+
Sbjct: 281 YVRVVKARELPIMDITGSVDPFVEVRVGNYKGITRHFEKRQHPEWNQVFAFAKERMQASV 340
Query: 348 LEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLA 407
LEV +KDK+++ +DDY+G V FD+N+VP RVPPDSPLAPQWYRLED++GE K++G+ MLA
Sbjct: 341 LEVVVKDKDLL-KDDYVGFVRFDINDVPLRVPPDSPLAPQWYRLEDKKGE-KIKGELMLA 398
Query: 408 IWMGTQADEAFAEAWHSDASS-VYGEGVFN--IRSKVYVSPKLWYLRVNVIEAQDIVPND 464
+W+GTQADEAF++AWHSDA+ V + +RSKVY +P+LWY+RVNVIEAQD++P D
Sbjct: 399 VWIGTQADEAFSDAWHSDAAMPVDCSPAISAVLRSKVYHAPRLWYVRVNVIEAQDLIPTD 458
Query: 465 RNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASK 524
+ R P+ +VK Q+GNQV+KT+ C T +WNED +FV AEPFE+ L LTVEDRV K
Sbjct: 459 KTRFPDVYVKAQLGNQVMKTRPCQARTLGAVWNEDFLFVVAEPFEDHLVLTVEDRVAPGK 518
Query: 525 DEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFSSRVHLRVCLEG 584
DE++G+ +PL+ EKR D +H+RW+NLE+ ++ D+ K KFS R+HLRVCLEG
Sbjct: 519 DEIVGRTYIPLNTVEKRADDHMIHARWYNLERPVI--VDVDQLKREKFSMRIHLRVCLEG 576
Query: 585 GYHVLDESTMYISDQRPTAKQLWKPPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKY 644
GYHVLDEST Y SD RP+A+ LW+ P+G+LE+GIL A GL PMK ++GRG++D +C+ KY
Sbjct: 577 GYHVLDESTHYSSDLRPSARPLWRQPIGVLELGILNAVGLHPMKTREGRGTSDTFCVGKY 636
Query: 645 GQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRI 704
GQKWVRTRT++D PK+NEQYTWEV+DP TV+T+GVFDN LG EK N RD +I
Sbjct: 637 GQKWVRTRTMVDNLCPKYNEQYTWEVFDPATVLTVGVFDNGQLG--EKGN-----RDVKI 689
Query: 705 GKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTIFSLASMIYVYGHPLLP 764
GK+RIRLSTLE RIYTHSYPLLVLHP GVKKMGEL +A+RFT S A+M+Y Y PLLP
Sbjct: 690 GKIRIRLSTLETGRIYTHSYPLLVLHPTGVKKMGELHMAVRFTCISFANMLYQYSKPLLP 749
Query: 765 KMHYLHPFTVNQVDNLRHQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANF 824
KMHY+ PF+V Q D LRHQA+NIVA RLGRAEPPLRKE++E+M D DSH+WSMR+SKANF
Sbjct: 750 KMHYVRPFSVMQQDMLRHQAVNIVAARLGRAEPPLRKEIIEFMSDTDSHLWSMRKSKANF 809
Query: 825 FRVMSLLSGMISVSRWFTDICNWRNPVTAVLVHILFLILIWYPELILPTVFLYMFLIGLW 884
FR+M++ SG+I+V +WF+DIC+WRNP+T VLVH+LFL+L+ PELILPT+FLYMFLIGLW
Sbjct: 810 FRMMTVFSGVIAVGKWFSDICSWRNPITTVLVHVLFLMLVCLPELILPTMFLYMFLIGLW 869
Query: 885 NYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSKTHDIVRIRYDRLRSVAGRIQTV 944
NYRFRPR+PPHM+TK+S AEAVHPDELDEEFDTFPT++ D+VR+RYDRLRSVAGRIQTV
Sbjct: 870 NYRFRPRYPPHMNTKISQAEAVHPDELDEEFDTFPTTRNPDMVRLRYDRLRSVAGRIQTV 929
Query: 945 VGDIATQGERFQSLLSWRDPRATALFILFSLCAAMVLYTTPFKVVALLAGLYYLRHPRFR 1004
+GD+ATQGERFQ+LLSWRDPRATA+F++ AA+V + TP ++V LAG + +RHPRFR
Sbjct: 930 IGDLATQGERFQALLSWRDPRATAIFVILCFIAAIVFFITPIQIVVALAGFFTMRHPRFR 989
Query: 1005 SKLPSVPSNFFKRMPARTDSLL 1026
+LPSVP NFF+R+PARTDS+L
Sbjct: 990 HRLPSVPVNFFRRLPARTDSML 1011
|
|
| TAIR|locus:2009492 AT1G22610 "AT1G22610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2641 (934.7 bits), Expect = 5.2e-305, Sum P(2) = 5.2e-305
Identities = 488/796 (61%), Positives = 615/796 (77%)
Query: 233 LQQGRPGDQE-EYNLKDTNPQLGERWPNXXXXXXXXXXXXERFTSTYDLVEQMSYLYVRV 291
+Q P Q E+ L +T+P L R ++ +STYDLVEQM YLYV V
Sbjct: 245 MQMQPPRQQNPEFQLIETSPPLAARMRQSYYYRSSG----DKTSSTYDLVEQMHYLYVSV 300
Query: 292 VKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVF 351
VKA+DLP ++GS DPYVEVK+GNYKG TKH EK NP W Q+FAFSKER+QS++LEV
Sbjct: 301 VKARDLPVMDVSGSLDPYVEVKLGNYKGLTKHLEKNSNPIWKQIFAFSKERLQSNLLEVT 360
Query: 352 LKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMG 411
+KDK+++ +DD++GRV DL EVP RVPPDSPLAPQWYRLED++G RG+ MLA+WMG
Sbjct: 361 VKDKDLLTKDDFVGRVHIDLTEVPLRVPPDSPLAPQWYRLEDKKGMKTNRGEIMLAVWMG 420
Query: 412 TQADEAFAEAWHSDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEG 471
TQADE+F +AWHSDA V + N RSKVY SPKL+YLR++V+EAQD+VP+D+ R+P+
Sbjct: 421 TQADESFPDAWHSDAHRVSHSNLSNTRSKVYFSPKLYYLRIHVMEAQDLVPSDKGRVPDA 480
Query: 472 FVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASKDEVLGKI 531
VK+Q GNQ+ T+ T NP W+E+L+FV +EPFE+ + ++V+DR+ KDE+LG++
Sbjct: 481 IVKIQAGNQMRATRTPQMRTMNPQWHEELMFVVSEPFEDMVIVSVDDRIGPGKDEILGRV 540
Query: 532 SLPLHIFEKRLD-HRPVHSRWFNLEKFGFGAIEADRRKELKFSSRVHLRVCLEGGYHVLD 590
+P+ R + + RWFNL++ E + +++ KFSS++ LRVC+E GYHVLD
Sbjct: 541 FIPVRDVPVRQEVGKMPDPRWFNLQRHSMSMEEENEKRKEKFSSKILLRVCIEAGYHVLD 600
Query: 591 ESTMYISDQRPTAKQLWKPPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVR 650
EST + SD +P++K L KP +GILE+GIL A+ L+PMK KDGR TD YC+AKYG KWVR
Sbjct: 601 ESTHFSSDLQPSSKHLRKPSIGILELGILSARNLMPMKGKDGR-MTDPYCVAKYGNKWVR 659
Query: 651 TRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIR 710
TRT+LD PKWNEQYTWEV+DPCTVIT+GVFDN H+ G G +D RIGKVR+R
Sbjct: 660 TRTLLDALAPKWNEQYTWEVHDPCTVITIGVFDNSHVNDG----GD--FKDQRIGKVRVR 713
Query: 711 LSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTIFSLASMIYVYGHPLLPKMHYLH 770
LSTLE R+YTH YPLLVL P G+KK GELQLA+R+T +M+ YG PLLPKMHY+
Sbjct: 714 LSTLETDRVYTHFYPLLVLTPGGLKKNGELQLALRYTCTGFVNMMAQYGRPLLPKMHYIQ 773
Query: 771 PFTVNQVDNLRHQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRVMSL 830
P V +D LRHQAM IVA RL R+EPPLR+EVVEYMLDVD HM+S+RRSKANF R+MSL
Sbjct: 774 PIPVRHIDLLRHQAMQIVATRLSRSEPPLRREVVEYMLDVDYHMFSLRRSKANFSRIMSL 833
Query: 831 LSGMISVSRWFTDICNWRNPVTAVLVHILFLILIWYPELILPTVFLYMFLIGLWNYRFRP 890
LS + V +WF DIC WRNP+T LVH+LFLIL+ YPELILPTVFLY+F+IG+WNYR+RP
Sbjct: 834 LSSVTLVCKWFNDICTWRNPITTCLVHVLFLILVCYPELILPTVFLYLFVIGMWNYRYRP 893
Query: 891 RHPPHMDTKLSWAEAVHPDELDEEFDTFPTSKTHDIVRIRYDRLRSVAGRIQTVVGDIAT 950
RHPPHMD ++S A+ HPDELDEEFDTFPTS+ DIVR+RYDRLRSV GR+QTVVGD+AT
Sbjct: 894 RHPPHMDARVSQADNAHPDELDEEFDTFPTSRPADIVRMRYDRLRSVGGRVQTVVGDLAT 953
Query: 951 QGERFQSLLSWRDPRATALFILFSLCAAMVLYTTPFKVVALLAGLYYLRHPRFRSKLPSV 1010
QGER Q+LLSWRDPRATALFI+F+L A+ +Y TPF+V+A++ GL+ LRHPRFRS++PSV
Sbjct: 954 QGERIQALLSWRDPRATALFIVFALIWAVFIYVTPFQVIAIIIGLFMLRHPRFRSRMPSV 1013
Query: 1011 PSNFFKRMPARTDSLL 1026
P+NFFKR+PA++D LL
Sbjct: 1014 PANFFKRLPAKSDMLL 1029
|
|
| TAIR|locus:2020280 AT1G04150 "AT1G04150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2320 (821.7 bits), Expect = 7.9e-280, Sum P(2) = 7.9e-280
Identities = 448/800 (56%), Positives = 589/800 (73%)
Query: 243 EYNLKDTNPQLGERWPNXXXXXXXXXXXXERFTSTYDLVEQMSYLYVRVVKAKDLPPSSI 302
E++LK+T P LG ++ +STYDLVEQM YLYV +VKAKDL S+
Sbjct: 241 EFSLKETKPCLG----GTSNGLGGLSSHKDKTSSTYDLVEQMQYLYVNIVKAKDL---SV 293
Query: 303 TGSCDPYVEVKMGNYKGRTKHFEKRM-NPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRD 361
G + EVK+GNY+G TK NPEWNQVF FSKERIQSS++E+F+K+ +D
Sbjct: 294 LG--EVVSEVKLGNYRGVTKKVSSNSSNPEWNQVFVFSKERIQSSVVELFVKEGN---KD 348
Query: 362 DYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGTQADEAFAEA 421
+Y GRV FDL+E+PTRVPPDSPLAPQWY++E+R G G+ G+ M+++W GTQADEAFAEA
Sbjct: 349 EYTGRVLFDLSEIPTRVPPDSPLAPQWYKIENRNG-GRGNGELMVSVWFGTQADEAFAEA 407
Query: 422 WHSDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPNDRN----RLPEGFVKVQV 477
WHS A +V+ E + +I+SKVY+SPKLWYLR++VIEAQD+ D+ R PE K+QV
Sbjct: 408 WHSKAGNVHIEELSSIKSKVYLSPKLWYLRISVIEAQDVAIMDKGSSLMRFPELSAKLQV 467
Query: 478 GNQVLKTKIC---PTPT-TNPLWNEDLVFVAAEPFEEQLFLTVEDRVHAS-----KDEVL 528
G+Q+L+T I PT + +NP WNEDL+FV AEPFE+ + + VEDR++ D +
Sbjct: 468 GSQILRTAIASAIPTKSFSNPYWNEDLMFVVAEPFEDCVTVVVEDRLNGGAIGGQNDVAV 527
Query: 529 GKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFSSRVHLRVCLEGGYHV 588
G++ +P+ E+R V SRWF+L+ G +F SR+HLR+ L+GGYHV
Sbjct: 528 GRVQIPISAVERRTGDTLVGSRWFSLDN---G------NNNNRFGSRIHLRLSLDGGYHV 578
Query: 589 LDESTMYISDQRPTAKQLWKPPVGILEVGILGAQGLLPMKMKDGR--GSTDAYCIAKYGQ 646
LDE+TMY SD RPTAK+LWKP VG+LE+GIL A GL+PMK++DG+ G D+YC+AKYG
Sbjct: 579 LDEATMYNSDVRPTAKELWKPQVGLLEIGILSATGLMPMKVRDGKCGGIADSYCVAKYGP 638
Query: 647 KWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGK 706
KWVRTRT++D+ PKWNEQYTWEVYDPCTV+T+GVFDN + +N +S RD RIGK
Sbjct: 639 KWVRTRTVVDSLCPKWNEQYTWEVYDPCTVVTVGVFDNARVN----ENNNS--RDVRIGK 692
Query: 707 VRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTIFSLASMIYVYGHPLLPKM 766
VRIRLSTLE R+YTHSYPL+VLHP GVKK GEL LA+R + + +M+++Y PLLPKM
Sbjct: 693 VRIRLSTLETGRVYTHSYPLIVLHPSGVKKTGELHLAVRLSCGNAVNMLHMYALPLLPKM 752
Query: 767 HYLHPFTVNQVDNLRHQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFR 826
HY P V+ ++ LR+Q +N VA RL RAEPPL +EVVEYMLD D H+WSMRRSKANFFR
Sbjct: 753 HYTQPLGVHMLERLRYQTLNAVAARLSRAEPPLGREVVEYMLDHDFHVWSMRRSKANFFR 812
Query: 827 VMSLLSGMISVSRWFTDICNWRNPVTAVLVHILFLILIWYPELILPTVFLYMFLIGLWNY 886
+++++SG+++V++ + +W PV + + + FL ++ +PEL+LP + LY +G+W +
Sbjct: 813 LVNVISGLVAVAKLVEVMRSWSKPVYSTVFVLAFLFMVLFPELLLPCLLLYTAAVGVWRF 872
Query: 887 RFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSKTHDIVRIRYDRLRSVAGRIQTVVG 946
R R R+PPHMD ++S AE V PDELDEEFDTFPTS+ D+VR+RYDR+RS+AGR+QTVVG
Sbjct: 873 RRRSRYPPHMDARISHAETVFPDELDEEFDTFPTSRGFDVVRMRYDRVRSIAGRVQTVVG 932
Query: 947 DIATQGERFQSLLSWRDPRATALFILFSLCAAMVLYTTPFKVVALLAGLYYLRHPRFRSK 1006
D+A+QGER Q+LLSWRDPRAT LF++F L AA+ YT P K+ ++GLYYLR PRFR K
Sbjct: 933 DMASQGERVQALLSWRDPRATFLFLMFCLLAAVGFYTVPVKLTVAISGLYYLRPPRFRRK 992
Query: 1007 LPSVPSNFFKRMPARTDSLL 1026
LPS +FF+R+P+R DSLL
Sbjct: 993 LPSRGLSFFRRLPSRADSLL 1012
|
|
| TAIR|locus:2127103 AT4G00700 "AT4G00700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2387 (845.3 bits), Expect = 4.0e-265, Sum P(2) = 4.0e-265
Identities = 461/881 (52%), Positives = 628/881 (71%)
Query: 156 KTFTALPKVEELAA-VDAPKSLPEEEISRISLKEDIKEPAKVTVEPIQEFLKQQVVLQPG 214
+ ++ P+ E + + + A S+ +E + ++K P T +KQQ ++ G
Sbjct: 148 QAYSPSPRKEHVKSLITADASMATDE------RRELK-PKTRTFHNSAPLVKQQPMMNYG 200
Query: 215 ----QSVEKQPQGVPFTMHSMNLQQGRPGDQEEYNLKDTNPQLGERWPNXXXXXXXXXXX 270
++ P+ V +L Q P ++++K+T+P LG
Sbjct: 201 IHEMRAAPMPPRVVQVNGPGPSLHQLPP----DFSVKETSPLLG----GGRIVGGRVVRG 252
Query: 271 XERFTS-TYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMN 329
ER TS TYDLVE+M +LYVRVVKA+DLP +TGS DPYV VK+GN+KG T HF K +
Sbjct: 253 TERPTSGTYDLVEEMKFLYVRVVKARDLPNKDLTGSLDPYVVVKIGNFKGVTTHFNKNTD 312
Query: 330 PEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWY 389
PEWNQVFAF+K+ +QS+ LEV +KDK+++ DD++G V FDL EV +RVPPDSPLAPQWY
Sbjct: 313 PEWNQVFAFAKDNLQSNFLEVMVKDKDIL-LDDFVGIVKFDLREVQSRVPPDSPLAPQWY 371
Query: 390 RLEDRRGEGKVRGQTMLAIWMGTQADEAFAEAWHSDAS-SVYGEGVF--NIRSKVYVSPK 446
RLE++RGE K + MLA+W GTQADEAF +A SD+ + N+RSKVY SP+
Sbjct: 372 RLENKRGEKK-NYEIMLAVWSGTQADEAFGDATFSDSLVDSDSSNIISANLRSKVYHSPR 430
Query: 447 LWYLRVNVIEAQD-IVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAA 505
LWYLRV ++EAQD I+ +D++R+PE FV+V+VGNQ+L+TK P + NP W ++ FV A
Sbjct: 431 LWYLRVQILEAQDVIIVSDKSRVPEVFVRVKVGNQMLRTKF-PQRSNNPKWGDEFTFVVA 489
Query: 506 EPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEAD 565
EPFE+ L L+VED ++DE +GK + ++ EKR+D +P H RW +LE A++ D
Sbjct: 490 EPFEDNLVLSVEDHTAPNRDEPVGKAVILMNDIEKRIDDKPFHDRWVHLEDSISDAMDVD 549
Query: 566 RRKELKFSSRVHLRVCLEGGYHVLDESTMYISDQRPTAKQLWKPPVGILEVGILGAQGLL 625
+ K++KF++R+ + L+GGYHV DES SD RP++++LWKP +G+LE+GIL A
Sbjct: 550 KAKKVKFATRLRYKAVLDGGYHVFDESMYNSSDLRPSSRKLWKPAIGVLELGILNANVFH 609
Query: 626 PMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNC 685
MK ++G+G++D Y +AKYG KWVR+RT++++ NPK+NEQYTWEV+DP TV+T+ VFDN
Sbjct: 610 SMKTREGKGTSDTYVVAKYGHKWVRSRTVINSMNPKYNEQYTWEVFDPATVLTICVFDNA 669
Query: 686 HLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIR 745
H G+ N RD IGKVRIRLSTL+ R+YTH+YPLLVL P G+KK GEL LA+R
Sbjct: 670 HFAAGDGGNK----RDQPIGKVRIRLSTLQTGRVYTHAYPLLVLQPTGLKKRGELHLAVR 725
Query: 746 FTIFSLASMIYVYGHPLLPKMHYLHPFTVNQVDNLRHQAMNIVAVRLGRAEPPLRKEVVE 805
FT S++SM+ Y PLLPKMHY+ P + NQ + L+ QA+NI+ VRLGR+EPPLR+EVV+
Sbjct: 726 FTCTSVSSMLMKYTKPLLPKMHYILPLSTNQQEALKMQAINIIIVRLGRSEPPLRREVVD 785
Query: 806 YMLDVDSHMWSMRRSKANFFRVMSLLSGMISVSRWFTDICNWRNPVTAVLVHILFLILIW 865
Y+ D S ++SMRRSKANF R ++ SG +SV +W +C W+ PVT LVH+L+ +L+
Sbjct: 786 YLTDWKSQLFSMRRSKANFNRFTTVFSGALSVWKWMEQVCTWKTPVTTALVHVLYTMLVT 845
Query: 866 YPELILPTVFLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSKTHD 925
+PE+ILPTVFLYM +IG+WNYRF+PR PPHMD KLS+A+ V+ DELDEEFDTFPT + D
Sbjct: 846 FPEMILPTVFLYMAVIGMWNYRFKPRFPPHMDAKLSYADNVNSDELDEEFDTFPTVRAPD 905
Query: 926 IVRIRYDRLRSVAGRIQTVVGDIATQGERFQSLLSWRDPRATALFILFSLCAAMVLYTTP 985
IV++RYDRLRSVAG++Q+V GDIA QGER Q+LLSWRDPRATA+F+ F AM LY TP
Sbjct: 906 IVKMRYDRLRSVAGKVQSVAGDIAAQGERVQALLSWRDPRATAIFVTFCFIIAMALYITP 965
Query: 986 FKVVALLAGLYYLRHPRFRSKLPSVPSNFFKRMPARTDSLL 1026
FK+VALL+G Y++RHP+ R ++PS P NFF+R+PA TDS+L
Sbjct: 966 FKLVALLSGYYFMRHPKLRHRIPSAPVNFFRRLPAMTDSML 1006
|
|
| TAIR|locus:2098846 AT3G61300 "AT3G61300" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1864 (661.2 bits), Expect = 8.3e-249, Sum P(3) = 8.3e-249
Identities = 358/633 (56%), Positives = 474/633 (74%)
Query: 402 GQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQD-- 459
G+ MLA+W GTQADEAF++A +SDA + + ++RSKVY SP+LWYLRVNVIEAQD
Sbjct: 360 GEIMLAVWFGTQADEAFSDATYSDALNAVNKS--SLRSKVYHSPRLWYLRVNVIEAQDLV 417
Query: 460 IVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDR 519
IVP DR RLP +VK+++ NQV++TK P+ + NP WNE+ VAAEPFE+ L +++EDR
Sbjct: 418 IVP-DRTRLPNPYVKIRLNNQVVRTK--PSHSLNPRWNEEFTLVAAEPFED-LIISIEDR 473
Query: 520 VHASKDEVLGKISLPLHIFEKRLD-HRPVHSRWFNLEKFGFGAIEADRRKELKFSS-RVH 577
V +++E LG++ +P+ +KR+D +R V +RWF+L+ E RR ++F++ R+H
Sbjct: 474 VAPNREETLGEVHIPIGTIDKRIDDNRTVPNRWFSLKT------ENQRR--VRFATTRLH 525
Query: 578 LRVCLEGGYHVLDESTMYISDQRPTAKQLW---KPPVGILEVGILGAQGLLPMKMKDGRG 634
L VCLEGGYHVLDEST Y SD RP+ K+L +P G+LE+GIL +GL + + +
Sbjct: 526 LNVCLEGGYHVLDESTYYSSDFRPSMKELLSHKQPSFGVLELGILRIEGL-NLSQEGKKE 584
Query: 635 STDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEKQN 694
+ DAYC+AKYG KWVRTRT+ + NP++NEQYTWEVY+P TVIT+GVFDN + G N
Sbjct: 585 TVDAYCVAKYGTKWVRTRTVTNCLNPRFNEQYTWEVYEPATVITIGVFDNNQINSG---N 641
Query: 695 GSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTIFSLASM 754
G+ D +IGK+R+R+STLEA RIY+HSYPLLVL P G+KKMGEL LAIRF+ S+ M
Sbjct: 642 GNKG--DGKIGKIRVRISTLEAGRIYSHSYPLLVLRPSGLKKMGELHLAIRFSCSSMFQM 699
Query: 755 IYVYGHPLLPKMHYLHPFTVNQVDNLRHQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHM 814
+ Y PLLPKMHY P V Q + LR A+N+VA RL RAEPPLRKEVVEY+ D +SH+
Sbjct: 700 LMQYWKPLLPKMHYARPLKVVQQEILRQHAVNLVAARLSRAEPPLRKEVVEYISDSNSHL 759
Query: 815 WSMRRSKANFFRVMSLLSGMISVSRWFTDICNWRNPVTAVLVHILFLILIWYPELILPTV 874
WSMR+S+AN FR+ S+ SG++ WF DIC W+ PV +HI+FL+L+ PE+ILP +
Sbjct: 760 WSMRKSRANLFRLSSVFSGLLGTGEWFQDICRWKKPVETTAIHIIFLVLVCSPEMILPVM 819
Query: 875 FLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFP-TSKTHDIVRIRYDR 933
L +F++G+WNYR RPR PPHMDT+LS+A+ +HP+EL+EEFDTFP +S+ IV++RY+R
Sbjct: 820 SLCLFMLGVWNYRLRPRQPPHMDTRLSFADNIHPEELNEEFDTFPFSSQDPGIVKMRYER 879
Query: 934 LRSVAGRIQTVVGDIATQGERFQSLLSWRDPRATALFILFSLCAAMVLYTTPFKVVALLA 993
LRS+A R QTVVGDIA QGER Q+LLSWRDPRAT++F++ L + +VLY PFKV LLA
Sbjct: 880 LRSIASRAQTVVGDIAGQGERVQALLSWRDPRATSIFMVLCLVSTVVLYVVPFKVFVLLA 939
Query: 994 GLYYLRHPRFRSKLPSVPSNFFKRMPARTDSLL 1026
GLY +R PRFR K P P NFF+R+PA+TD +L
Sbjct: 940 GLYIMRPPRFRGKTPPGPINFFRRLPAKTDCML 972
|
|
| TAIR|locus:2019070 QKY "AT1G74720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2037 (722.1 bits), Expect = 2.7e-237, Sum P(2) = 2.7e-237
Identities = 415/816 (50%), Positives = 542/816 (66%)
Query: 233 LQQGRP--GDQEEYNLKDTNPQLGERWPNXXXXXXXXXXXXERFTSTYDLVEQMSYLYVR 290
+Q GRP GD+ + N R N ++ Y+LVE M YL+VR
Sbjct: 282 MQVGRPPGGDRIRVTKRPPNGDYSPRVINSKTGGGETTME-KKTHHPYNLVEPMQYLFVR 340
Query: 291 VVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRM-----NPEWNQVFAFSKERIQS 345
+VKA+ LPP+ YV+V+ N+ R+K R +PEWNQVFA R S
Sbjct: 341 IVKARGLPPNE-----SAYVKVRTSNHFVRSKPAVNRPGESVDSPEWNQVFALGHNRSDS 395
Query: 346 SMLEVFLKDKEM-VGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDR---RGEGKVR 401
++ L+ + +LG V FDL+EVP R PPDSPLAPQWYRLE + G++
Sbjct: 396 AVTGATLEISAWDASSESFLGGVCFDLSEVPVRDPPDSPLAPQWYRLEGSGADQNSGRIS 455
Query: 402 GQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQD-- 459
G L++W+GTQ DEAF EAW SDA V + RSKVY SPKLWYLRV V+EAQD
Sbjct: 456 GDIQLSVWIGTQVDEAFPEAWSSDAPHVA-----HTRSKVYQSPKLWYLRVTVLEAQDLH 510
Query: 460 IVPN-DRNRLPEGFVKVQVGNQVLKTK--ICPTPTTNPLWNEDLVFVAAEPFEEQLFLTV 516
I PN PE VK Q+G Q +T+ + + W+ED++FVA EP E+ L L V
Sbjct: 511 IAPNLPPLTAPEIRVKAQLGFQSARTRRGSMNNHSGSFHWHEDMIFVAGEPLEDCLVLMV 570
Query: 517 EDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAI----EADRRKELKF 572
EDR + +LG +P+ E+R+D R V S+W LE G G +
Sbjct: 571 EDRT-TKEATLLGHAMIPVSSIEQRIDERFVPSKWHTLEGEGGGGGGGGGPGGGGGGGPY 629
Query: 573 SSRVHLRVCLEGGYHVLDESTMYISDQRPTAKQLWKPPVGILEVGILGAQGLLPMKMKDG 632
R+ LR+CLEGGYHVL+E+ SD RPTAKQLWKPP+GILE+GILGA+GLLPMK K+G
Sbjct: 630 CGRISLRLCLEGGYHVLEEAAHVCSDFRPTAKQLWKPPIGILELGILGARGLLPMKAKNG 689
Query: 633 -RGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGE 691
+GSTDAYC+AKYG+KWVRTRTI D+F+P+W+EQYTW+VYDPCTV+T+GVFDN +
Sbjct: 690 GKGSTDAYCVAKYGKKWVRTRTITDSFDPRWHEQYTWQVYDPCTVLTVGVFDNWRMFS-- 747
Query: 692 KQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTIFSL 751
+ S D+RIGK+RIR+STLE++++YT+SYPLLVL P G+KKMGE+++A+RF SL
Sbjct: 748 --DASDDRPDTRIGKIRIRVSTLESNKVYTNSYPLLVLLPSGMKKMGEIEVAVRFACPSL 805
Query: 752 A-SMIYVYGHPLLPKMHYLHPFTVNQVDNLRHQAMNIVAVRLGRAEPPLRKEVVEYMLDV 810
+ YG PLLP+MHY+ P V Q D LR A +VA L RAEPPL EVV YMLD
Sbjct: 806 LPDVCAAYGQPLLPRMHYIRPLGVAQQDALRGAATKMVAAWLARAEPPLGPEVVRYMLDA 865
Query: 811 DSHMWSMRRSKANFFRVMSLLSGMISVSRWFTDICNWRNPVTAVLVHILFLILIWYPELI 870
DSH WSMR+SKAN++R++ +L+ + +++W +I WRNPVT VLVHIL+L+L+WYP+L+
Sbjct: 866 DSHAWSMRKSKANWYRIVGVLAWAVGLAKWLDNIRRWRNPVTTVLVHILYLVLVWYPDLV 925
Query: 871 LPTVFLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSKTHDIVRIR 930
+PT FLY+ +IG+W YRFRP+ P MD +LS AE V PDELDEEFDT P+S+ +++R R
Sbjct: 926 VPTAFLYVVMIGVWYYRFRPKIPAGMDIRLSQAETVDPDELDEEFDTIPSSRRPEVIRAR 985
Query: 931 YDRLRSVAGRIQTVVGDIATQGERFQSLLSWRDPRATALFILFSLCAAMVLYTTPFKVVA 990
YDRLR +A R+QT++GD A QGER Q+L+SWRDPRAT LFI L +VLY P K+VA
Sbjct: 986 YDRLRILAVRVQTILGDFAAQGERIQALVSWRDPRATKLFIAICLVITIVLYAVPAKMVA 1045
Query: 991 LLAGLYYLRHPRFRSKLPSVPSNFFKRMPARTDSLL 1026
+ G YYLRHP FR +P+ NFF+R+P+ +D L+
Sbjct: 1046 VALGFYYLRHPMFRDTMPTASLNFFRRLPSLSDRLI 1081
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | grail3.0053011001 | hypothetical protein (1051 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1026 | |||
| pfam08372 | 156 | pfam08372, PRT_C, Plant phosphoribosyltransferase | 1e-106 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 1e-77 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 1e-65 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 3e-62 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 1e-56 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 3e-22 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 4e-22 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 2e-21 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 3e-19 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 5e-18 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 8e-18 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 5e-17 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 9e-17 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 5e-16 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 1e-15 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 5e-15 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 5e-15 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 9e-15 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 2e-14 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 2e-14 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 3e-14 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 3e-14 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 7e-14 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 1e-13 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 2e-13 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 5e-13 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 9e-13 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 5e-12 | |
| cd08688 | 110 | cd08688, C2_KIAA0528-like, C2 domain found in the | 2e-11 | |
| cd08386 | 125 | cd08386, C2A_Synaptotagmin-7, C2A domain first rep | 3e-11 | |
| cd04036 | 119 | cd04036, C2_cPLA2, C2 domain present in cytosolic | 3e-11 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 7e-11 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 1e-10 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 1e-10 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 2e-10 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 2e-10 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 3e-10 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 3e-10 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 3e-10 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 4e-10 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 7e-10 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 1e-09 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 1e-09 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 1e-09 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 3e-09 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 3e-09 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 3e-09 | |
| cd04017 | 135 | cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe | 3e-09 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 4e-09 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 4e-09 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 6e-09 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 8e-09 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 8e-09 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 1e-08 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 1e-08 | |
| cd08390 | 123 | cd08390, C2A_Synaptotagmin-15-17, C2A domain first | 1e-08 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 2e-08 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 2e-08 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 2e-08 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 3e-08 | |
| cd08387 | 124 | cd08387, C2A_Synaptotagmin-8, C2A domain first rep | 4e-08 | |
| cd08385 | 124 | cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain | 6e-08 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 8e-08 | |
| cd04010 | 148 | cd04010, C2B_RasA3, C2 domain second repeat presen | 9e-08 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 1e-07 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 1e-07 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 2e-07 | |
| cd04017 | 135 | cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe | 2e-07 | |
| cd08383 | 117 | cd08383, C2A_RasGAP, C2 domain (first repeat) of R | 2e-07 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 2e-07 | |
| cd04020 | 162 | cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat | 2e-07 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 3e-07 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 3e-07 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 3e-07 | |
| cd08404 | 136 | cd08404, C2B_Synaptotagmin-4, C2 domain second rep | 3e-07 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 5e-07 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 7e-07 | |
| cd04018 | 151 | cd04018, C2C_Ferlin, C2 domain third repeat in Fer | 7e-07 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 7e-07 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 9e-07 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 1e-06 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 1e-06 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 2e-06 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 2e-06 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 3e-06 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 3e-06 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 3e-06 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 3e-06 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 3e-06 | |
| cd08676 | 153 | cd08676, C2A_Munc13-like, C2 domain first repeat i | 3e-06 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 4e-06 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 4e-06 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 5e-06 | |
| cd04032 | 127 | cd04032, C2_Perforin, C2 domain of Perforin | 5e-06 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 6e-06 | |
| cd08688 | 110 | cd08688, C2_KIAA0528-like, C2 domain found in the | 7e-06 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 7e-06 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 7e-06 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 8e-06 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 8e-06 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 1e-05 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 1e-05 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 1e-05 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 2e-05 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 3e-05 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 3e-05 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 3e-05 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 3e-05 | |
| cd08678 | 126 | cd08678, C2_C21orf25-like, C2 domain found in the | 5e-05 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 6e-05 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 7e-05 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 8e-05 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 8e-05 | |
| cd08386 | 125 | cd08386, C2A_Synaptotagmin-7, C2A domain first rep | 9e-05 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 1e-04 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 1e-04 | |
| cd04020 | 162 | cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat | 1e-04 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 1e-04 | |
| cd04052 | 111 | cd04052, C2B_Tricalbin-like, C2 domain second repe | 1e-04 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 2e-04 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 2e-04 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 2e-04 | |
| cd08385 | 124 | cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain | 2e-04 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 2e-04 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 2e-04 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 2e-04 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 2e-04 | |
| cd08382 | 123 | cd08382, C2_Smurf-like, C2 domain present in Smad | 2e-04 | |
| cd04041 | 111 | cd04041, C2A_fungal, C2 domain first repeat; funga | 2e-04 | |
| cd04017 | 135 | cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe | 3e-04 | |
| cd04010 | 148 | cd04010, C2B_RasA3, C2 domain second repeat presen | 3e-04 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 3e-04 | |
| cd04018 | 151 | cd04018, C2C_Ferlin, C2 domain third repeat in Fer | 3e-04 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 3e-04 | |
| cd08676 | 153 | cd08676, C2A_Munc13-like, C2 domain first repeat i | 3e-04 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 4e-04 | |
| cd08521 | 123 | cd08521, C2A_SLP, C2 domain first repeat present i | 4e-04 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 5e-04 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 5e-04 | |
| cd08388 | 128 | cd08388, C2A_Synaptotagmin-4-11, C2A domain first | 5e-04 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 6e-04 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 6e-04 | |
| cd04041 | 111 | cd04041, C2A_fungal, C2 domain first repeat; funga | 6e-04 | |
| cd08381 | 122 | cd08381, C2B_PI3K_class_II, C2 domain second repea | 6e-04 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 7e-04 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 7e-04 | |
| cd08401 | 121 | cd08401, C2A_RasA2_RasA3, C2 domain first repeat p | 7e-04 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 9e-04 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 0.001 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 0.001 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 0.001 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 0.001 | |
| cd08401 | 121 | cd08401, C2A_RasA2_RasA3, C2 domain first repeat p | 0.001 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 0.001 | |
| cd04039 | 108 | cd04039, C2_PSD, C2 domain present in Phosphatidyl | 0.001 | |
| cd08410 | 135 | cd08410, C2B_Synaptotagmin-17, C2 domain second re | 0.001 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 0.002 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 0.002 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 0.002 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 0.002 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 0.002 | |
| cd08676 | 153 | cd08676, C2A_Munc13-like, C2 domain first repeat i | 0.002 | |
| cd08676 | 153 | cd08676, C2A_Munc13-like, C2 domain first repeat i | 0.002 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 0.002 | |
| cd04052 | 111 | cd04052, C2B_Tricalbin-like, C2 domain second repe | 0.002 | |
| cd04041 | 111 | cd04041, C2A_fungal, C2 domain first repeat; funga | 0.002 | |
| cd08381 | 122 | cd08381, C2B_PI3K_class_II, C2 domain second repea | 0.002 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 0.002 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 0.003 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 0.003 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 0.003 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 0.004 | |
| cd04047 | 110 | cd04047, C2B_Copine, C2 domain second repeat in Co | 0.004 | |
| cd04016 | 121 | cd04016, C2_Tollip, C2 domain present in Toll-inte | 0.004 | |
| cd08403 | 134 | cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s | 0.004 |
| >gnl|CDD|192017 pfam08372, PRT_C, Plant phosphoribosyltransferase C-terminal | Back alignment and domain information |
|---|
Score = 326 bits (839), Expect = e-106
Identities = 126/156 (80%), Positives = 145/156 (92%)
Query: 871 LPTVFLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSKTHDIVRIR 930
LPT+FLY+F+IGLWNYRFRPRHPPHMDT+LS A+A HPDELDEEFDTFPTS+ D+VR+R
Sbjct: 1 LPTIFLYLFVIGLWNYRFRPRHPPHMDTRLSHADAAHPDELDEEFDTFPTSRPPDVVRMR 60
Query: 931 YDRLRSVAGRIQTVVGDIATQGERFQSLLSWRDPRATALFILFSLCAAMVLYTTPFKVVA 990
YDRLRSVAGR+QTVVGDIATQGER Q+LLSWRDPRATA+F+LF L AA+VLY PFKVVA
Sbjct: 61 YDRLRSVAGRVQTVVGDIATQGERLQALLSWRDPRATAIFVLFCLVAAVVLYVVPFKVVA 120
Query: 991 LLAGLYYLRHPRFRSKLPSVPSNFFKRMPARTDSLL 1026
LLAG YYLRHPRFRS++PSVP NFF+R+P+RTDS+L
Sbjct: 121 LLAGFYYLRHPRFRSRMPSVPLNFFRRLPSRTDSML 156
|
This domain is found at the C-terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (pfam00168). Length = 156 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 250 bits (640), Expect = 1e-77
Identities = 94/153 (61%), Positives = 119/153 (77%), Gaps = 3/153 (1%)
Query: 449 YLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPF 508
YLRV VIEAQD+VP+D+NR+PE FVK Q+GNQVL+T+ T NP WNE+L+FVAAEPF
Sbjct: 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF 60
Query: 509 EEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRK 568
E+ L L+VEDRV +KDE LG+ +PL+ E+R+D RPV SRWF+LE+ G + +R
Sbjct: 61 EDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKR- 119
Query: 569 ELKFSSRVHLRVCLEGGYHVLDESTMYISDQRP 601
KF+SR+HLR+CL+GGYHVLDEST Y SD RP
Sbjct: 120 --KFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 216 bits (551), Expect = 1e-65
Identities = 90/131 (68%), Positives = 102/131 (77%), Gaps = 5/131 (3%)
Query: 613 ILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYD 672
ILEVGILGAQGL ++ KDGRGSTDAYC+AKYG KWVRTRT+ D+ NP+WNEQYTW VYD
Sbjct: 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYD 60
Query: 673 PCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPH 732
PCTV+T+GVFDN E + D IGKVRIRLSTLE R+Y HSYPLL L+P
Sbjct: 61 PCTVLTVGVFDNSQSHWKE-----AVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPS 115
Query: 733 GVKKMGELQLA 743
GVKKMGEL+ A
Sbjct: 116 GVKKMGELECA 126
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 206 bits (526), Expect = 3e-62
Identities = 85/127 (66%), Positives = 99/127 (77%), Gaps = 6/127 (4%)
Query: 286 YLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQS 345
YLYVRVVKA+ LP S DP VEVK+GNYKG TK E+ NPEWNQVFAFSK+R+Q
Sbjct: 1 YLYVRVVKARGLP----ANSNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQG 56
Query: 346 SMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTM 405
S LEV + DK+ DD+LG V FDL+EVPTRVPPDSPLAPQWYRLED++G G+V G+ M
Sbjct: 57 STLEVSVWDKDKAK-DDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELM 114
Query: 406 LAIWMGT 412
LA+W GT
Sbjct: 115 LAVWFGT 121
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 1e-56
Identities = 68/128 (53%), Positives = 92/128 (71%), Gaps = 1/128 (0%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKS 61
KLVVEVVDA DLMPKDG+GS+S + E+DF Q +T+T PK+LNPVWN+KL+F+
Sbjct: 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSR 60
Query: 62 HNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEV 121
++L +EV +Y ++RR R FLGRVRI ++ V E V QR+PLEK+ S V+GE+
Sbjct: 61 LSNLVLEVYVY-NDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEI 119
Query: 122 GLKIYISP 129
GLK+YI+
Sbjct: 120 GLKVYITD 127
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 3e-22
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 286 YLYVRVVKAKDLPPSSITGSCDPYVEVKMGNY---KGRTKHFEKRMNPEWNQVFAFSKER 342
L V+++ A++LPP G DPYV+V + K +TK + +NP WN+ F F
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 343 IQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPD 381
+ + LE+ + DK+ GRDD++G+V L+++ +
Sbjct: 61 PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHE 99
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 4e-22
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNY-KGRTKHFEKRMNPEWNQVFAFSKERIQS 345
L V V++A++LP + G DPYV+V +G K +TK + +NP WN+ F F +S
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60
Query: 346 SMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRL 391
L V + DK+ +DD+LG V L+E + W L
Sbjct: 61 DTLTVEVWDKDRFSKDDFLGEVEIPLSE----LLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 2e-21
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKG---RTKHFEKRMNPEWNQVFAFSKERI 343
L V V+ AK+LPP + G DPYV+V +G K +TK + +NP WN+ F F
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 344 QSSMLEVFLKDKEMVGRDDYLGRV 367
+ + L + + D + G+DD++G V
Sbjct: 61 ELAELRIEVYDYDRFGKDDFIGEV 84
|
Length = 85 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 3e-19
Identities = 35/124 (28%), Positives = 67/124 (54%), Gaps = 8/124 (6%)
Query: 285 SYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQ 344
+L V+V++A L + I G DP+ +++ N + +T K +NPEWN++F F + I
Sbjct: 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIH 60
Query: 345 SSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQT 404
+LEV + D++ + ++LG+VA L + +WY L+D++ + +G
Sbjct: 61 -DVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE-------RKWYALKDKKLRTRAKGSI 112
Query: 405 MLAI 408
+L +
Sbjct: 113 LLEM 116
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 5e-18
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQ---VLKTKICPTPTTNPLWNEDLVFVAAE 506
LRV VI A+++ P D N + +VKV +G Q KTK+ T NP+WNE F
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKN-TLNPVWNETFTFEVTL 59
Query: 507 PFEEQLFLTVEDRVHASKDEVLGKIS 532
P +L + V D KD+ +G+++
Sbjct: 60 PELAELRIEVYDYDRFGKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 8e-18
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLS-KTKTIPKNLNPVWNQKLLFDFDQTKS 61
L V V++A +L KD G + P+ +V + KTK + LNPVWN+ F +S
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60
Query: 62 HNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPL 108
+ V ++ +R FLG V IP S L+ G+E PL
Sbjct: 61 DT---LTVEVWDKDR--FSKDDFLGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 5e-17
Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 10/128 (7%)
Query: 287 LYVRVVKAKDLPPSSI--TGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQ 344
L V VV+AKDL G DPY + +G + +T+ +NP+WN F Q
Sbjct: 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ 62
Query: 345 SSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGE------G 398
+ +L++ L DK+ DYLG L EV +W L+ R G
Sbjct: 63 NQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQS--DKWITLKSTRPGKTSVVSG 120
Query: 399 KVRGQTML 406
++ Q
Sbjct: 121 EIHLQFSW 128
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 9e-17
Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVGN-QVLKTKICPTPTTNPLWNEDLVFVAAEPF 508
LRV VIEA+++ D N + +VKV +G Q KTK+ T NP+WNE F +P
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVK-NTLNPVWNETFEFPVLDPE 59
Query: 509 EEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNL 554
+ L + V D+ SKD+ LG++ +PL LD W L
Sbjct: 60 SDTLTVEVWDKDRFSKDDFLGEVEIPLSEL---LDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 5e-16
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLNQ---LSKTKTIPKNLNPVWNQKLLFDFDQT 59
L V V+ A +L PKD G + P+ +V Q KTK + LNPVWN+ F+
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 60 KSHNHLRIEVSIYHHERRPIPGRH-FLGRVR 89
+ LRIEV Y ++R G+ F+G V
Sbjct: 61 ELA-ELRIEV--YDYDR---FGKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 1e-15
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 18/99 (18%)
Query: 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWV---RTRTILDTFNPKWNEQYTWEV 670
L V ++ A+ L P D G +D Y G + +T+ + +T NP WNE +T+EV
Sbjct: 1 LRVTVISAKNLPPK---DLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEV 57
Query: 671 YDP-CTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVR 708
P + + V+D G +D IG+V
Sbjct: 58 TLPELAELRIEVYDYDRFG-----------KDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 5e-15
Identities = 43/116 (37%), Positives = 61/116 (52%), Gaps = 18/116 (15%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKM-----GNYKGRTKHFEKRMNPEWNQVFAFS-- 339
L V V++A+DLPP +PYV+V + K RTK +K +NPEWNQ F +S
Sbjct: 18 LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNV 77
Query: 340 -KERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPL--APQWYRLE 392
+E ++ LEV + D + G +D+LG V DL D+ L P WY L+
Sbjct: 78 RRETLKERTLEVTVWDYDRDGENDFLGEVVIDLA--------DALLDDEPHWYPLQ 125
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 5e-15
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSS 346
L V++A+DL P G+ DP+V V T +K P WN+VF F S
Sbjct: 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADS 61
Query: 347 MLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLE-----DRRGEGKV 400
L V + D ++V ++D+LG+V F + + + W+RL + G +
Sbjct: 62 PLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEG-----WFRLLPDPRAEEESGGNL 115
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 9e-15
Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFS---KERI 343
L V VV A+DL P GS YVE+ K RT+ K +NP WN+ F+ R+
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRL 61
Query: 344 QSSMLEVFLKDKEMVGR-DDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRG 402
+ +LEV++ + GR +LGRV T P S Q Y LE R +VRG
Sbjct: 62 SNLVLEVYVYNDRRSGRRRSFLGRVRISG----TSFVPPSEAVVQRYPLEKRGLFSRVRG 117
Query: 403 QTMLAIWM 410
+ L +++
Sbjct: 118 EIGLKVYI 125
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 2e-14
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 449 YLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQ---VLKTKICPTPTTNPLWNEDLVFVAA 505
L V +I A+++ P D+ + +VKV + KTK+ T NP+WNE F
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKN-TLNPVWNETFEFEVP 59
Query: 506 EPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRW 551
P +L + V D+ +D+ +G++++PL L H +
Sbjct: 60 PPELAELEIEVYDKDRFGRDDFIGQVTIPL----SDLLLGGRHEKL 101
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 2e-14
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 17/116 (14%)
Query: 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG-QKWVRTRTILDTFNPKWNEQYTWEVYD 672
L V ++ A+ L D G +D Y G ++ +T+ + +T NP WNE + + V D
Sbjct: 1 LRVTVIEARNLPAK---DLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLD 57
Query: 673 P-CTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEA-HRIYTHSYPL 726
P +T+ V+D +D +G+V I LS L + PL
Sbjct: 58 PESDTLTVEVWDKDRFS-----------KDDFLGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 3e-14
Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 25/132 (18%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKG----RTKHFEKRMNPEWNQVFAF---- 338
L VRV++ +DL S G+CDP+ V + RTK +K NP +++ F F
Sbjct: 1 LSVRVLECRDLALKS-NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59
Query: 339 -----------SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQ 387
+E ++ S L V L MV DD+LG V L + +
Sbjct: 60 GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQA----- 114
Query: 388 WYRLEDRRGEGK 399
WY L+ R G
Sbjct: 115 WYFLQPREAPGT 126
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 3e-14
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 11/125 (8%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKG-------RTKHFEKRMNPEWNQVFAFS 339
L V+V+ DL I G+ DPYV++ + + G +TK +K +NP+WN+ F F
Sbjct: 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR 61
Query: 340 KERIQSSML-EVFLKDKEMVGRDDYLGRVAFDLNEVPTRVP-PDSPLAPQWYRLEDRRGE 397
+ +L EVF D+ + RDD+LG+V LN +PT P + + Y L R +
Sbjct: 62 VNPREHRLLFEVF--DENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSK 119
Query: 398 GKVRG 402
+V+G
Sbjct: 120 SRVKG 124
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 7e-14
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLS---KTKTIPKNLNPVWNQKLLFDFDQ 58
L V+++ A +L PKD G + P+ +V KTK + LNPVWN+ F+
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVP- 59
Query: 59 TKSHNHLRIEVSIYHHERRPIPGRH-FLGRVRIPCSNLVRKGE 100
+E+ +Y +R GR F+G+V IP S+L+ G
Sbjct: 60 --PPELAELEIEVYDKDR---FGRDDFIGQVTIPLSDLLLGGR 97
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 1e-13
Identities = 31/85 (36%), Positives = 52/85 (61%)
Query: 291 VVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEV 350
+V+ K+LPP G DPYV+ ++GN K ++K K +NP+W + F QS +LE+
Sbjct: 6 LVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEI 65
Query: 351 FLKDKEMVGRDDYLGRVAFDLNEVP 375
+ DK+ +D+++GR DL+ +P
Sbjct: 66 EVWDKDTGKKDEFIGRCEIDLSALP 90
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 2e-13
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 613 ILEVGILGAQGLLPMKMKDGRGSTDAYC---IAKYGQKWVRTRTILDTFNPKWNEQYTWE 669
L V I+ A+ L P D G +D Y + ++ +T+ + +T NP WNE + +E
Sbjct: 1 TLTVKIISARNLPPK---DKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFE 57
Query: 670 VYDPCT-VITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAH 717
V P + + V+D G RD IG+V I LS L
Sbjct: 58 VPPPELAELEIEVYDKDRFG-----------RDDFIGQVTIPLSDLLLG 95
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 5e-13
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 9/123 (7%)
Query: 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSH 62
L V+V+ A L D G + PF ++ +N +T TI K LNP WN+ +F F H
Sbjct: 3 LQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNK--IFTFPIKDIH 60
Query: 63 NHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVG 122
+ L EV++Y ++ P FLG+V IP + ++ GE + + L+ K + KG +
Sbjct: 61 DVL--EVTVYDEDKDKKP--EFLGKVAIPLLS-IKNGERKW--YALKDKKLRTRAKGSIL 113
Query: 123 LKI 125
L++
Sbjct: 114 LEM 116
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 9e-13
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 20/122 (16%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEV-------KMGNYKGRTKHFEKRMNPEWNQVFAF- 338
L V V+KA++LPPS G DPYV+V K+ K K NP +N+ F+F
Sbjct: 16 LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTL--NPVFNEAFSFD 73
Query: 339 -SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPT--------RVPPDSPLAPQWY 389
E+++ L + + DK+ VGR++ +G+V + P P+A +W+
Sbjct: 74 VPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRKPIA-RWH 132
Query: 390 RL 391
+L
Sbjct: 133 KL 134
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 5e-12
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 289 VR--VVKAKDLPPSSITGSCDPYVEVKMG--NYKGRTKHFEKRMNPEWNQVFAFSKERIQ 344
VR VV+A++L P G DPY+++K+G R + +NP + ++F
Sbjct: 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPG 61
Query: 345 SSMLEVFLKDKEMVGRDDYLGRVAFDL 371
+S+L++ + D +++G DD +G DL
Sbjct: 62 NSILKISVMDYDLLGSDDLIGETVIDL 88
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-11
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 287 LYVRVVKAKDLPP-SSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWN-QVFAF--SKER 342
L VRVV A+DLP + D +VEVK G+ +T +K +NP WN + F F E
Sbjct: 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEE 60
Query: 343 IQSSMLEVFLKDKEMVGRDDYLGRVAFDLN 372
+Q L++ + D + +D +G+V DLN
Sbjct: 61 LQDEPLQIRVMDHDTYSANDAIGKVYIDLN 90
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110 |
| >gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 3e-11
Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 8/107 (7%)
Query: 274 FTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKM---GNYKGRTKHFEKRMNP 330
F+ +YD Q S L ++++KA +LP +G+ DP+V++ + +K TK K +NP
Sbjct: 7 FSVSYDF--QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNP 64
Query: 331 EWNQVFAF---SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEV 374
WN+ F F E++Q +L + + D + R+D +G V+ LN+V
Sbjct: 65 HWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKV 111
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 3e-11
Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKM---GNYKGRTKHFEKRMNPEWNQVFAFSKERI 343
L VRV++A ++ + + D YVE+ + + K RTK + +NP WN+ F F +
Sbjct: 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ 61
Query: 344 QSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVP 375
++LE+ + D++ V DD+LG V FD++++
Sbjct: 62 VKNVLELTVMDEDYV-MDDHLGTVLFDVSKLK 92
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 7e-11
Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 13/119 (10%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKM-----GNYKGRTKHFEKRMNPEWNQVFAFS-K 340
L V V +AK+L P G DPYV++K+ K +TK +K +NP WN+ F F K
Sbjct: 15 LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLK 74
Query: 341 ERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGK 399
+ L + + D + R+D++G ++F ++E+ ++P D WY+L + + EG+
Sbjct: 75 PADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSEL-IKMPVDG-----WYKLLN-QEEGE 126
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 1e-10
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 11/112 (9%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKM-------GNYKGRTKHFEKRMNPEWNQVFAFS 339
L V ++ A++L P GS DP+V+V++ +T+ +K + P +++ F F+
Sbjct: 18 LRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFN 77
Query: 340 ---KERIQSSMLEVF-LKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQ 387
++ L +F +KD +++G +D+ G LN++P S
Sbjct: 78 VPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGVEDTSSAQGFG 129
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-10
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 16/115 (13%)
Query: 287 LYVRVVKAKDLP------PSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAF-- 338
L + V++A+DL + G DPYV V++G ++K ++ +NP+WN+V+
Sbjct: 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVV 62
Query: 339 SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLED 393
+ Q +E+F +D +DD+LGR++ DL V +W LED
Sbjct: 63 DEVPGQELEIELFDED---PDKDDFLGRLSIDLGSV-----EKKGFIDEWLPLED 109
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 2e-10
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLS-----KTKTIPKNLNPVWNQKLLFDF 56
+L V V+ A +L P DG+G + P+ +V L KT LNPV+N+ FD
Sbjct: 15 RLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDV 74
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGRH-FLGRVRI 90
+ + + +++ + GR+ +G+V +
Sbjct: 75 PAEQLEE-VSLVITVVDKDSV---GRNEVIGQVVL 105
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-10
Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 17/132 (12%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAF----SKER 342
+ + VV A+ L TG+ DPYV V++G K RTK + +NP WN+ F F S +R
Sbjct: 3 ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDR 62
Query: 343 IQSSM------LEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRG 396
I+ + ++ LK K DD+LG+ ++ + S WY LE R
Sbjct: 63 IKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTL-------SGEMDVWYNLEKRTD 115
Query: 397 EGKVRGQTMLAI 408
+ V G L I
Sbjct: 116 KSAVSGAIRLHI 127
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-10
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSS 346
L V +V+ +DL P + G DPY EV MG+ + +TK +NP+WN F + ++
Sbjct: 17 LMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQD 76
Query: 347 MLEVFLKDKEMVGRDDYLGR 366
+L + + D++ DD+LGR
Sbjct: 77 VLCITVFDRDFFSPDDFLGR 96
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 3e-10
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 274 FTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKM--GNYKG---RTKHFEKRM 328
FT YD S L+ +++AK L G DPYV++ + G K RTK K
Sbjct: 6 FTLLYD--PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTR 63
Query: 329 NPEWNQVFAF---SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEV 374
NPE+N+ + ++E IQ L + + D++ G +D+LG L ++
Sbjct: 64 NPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFG-NDFLGETRIPLKKL 111
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-10
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 10/89 (11%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSS 346
L VRVV+ +L T S DPYV + +GN K +T+ +K +NP WN+ S + +
Sbjct: 4 LKVRVVRGTNLAVRDFTSS-DPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLS---VPNP 59
Query: 347 M----LEVFLKDKEMVGRDDYLGRVAFDL 371
M LEVF DK+ +DD +G DL
Sbjct: 60 MAPLKLEVF--DKDTFSKDDSMGEAEIDL 86
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 4e-10
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 10/131 (7%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFE 509
LR +V+EA+D+ P DRN + FV+V Q L+T + + P WNE F E +
Sbjct: 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKK-SCYPRWNEVFEFELMEGAD 60
Query: 510 EQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKE 569
L + V D SK++ LGK+ + + L WF L A+
Sbjct: 61 SPLSVEVWDWDLVSKNDFLGKVVFSI----QTLQQAKQEEGWFRLLPDP----RAEEESG 112
Query: 570 LKFSS-RVHLR 579
S R+ +R
Sbjct: 113 GNLGSLRLKVR 123
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 7e-10
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLS-----KTKTIPKNLNPVWNQKLLFDF 56
KL VEV +A +L+P D G + P+ ++ + KTKTI K LNPVWN+ FD
Sbjct: 14 KLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDL 73
Query: 57 DQTKSHNHLRIEV 69
L IEV
Sbjct: 74 KPADKDRRLSIEV 86
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-09
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 8/125 (6%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKS 61
+L+V +V+ DL P + G + P+ EV +Q KTK + LNP WN + F K
Sbjct: 16 RLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQF---FVKD 72
Query: 62 HNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSV-KGE 120
+ ++++ +R FLGR I ++++++ +E + P+ K+ L V GE
Sbjct: 73 LEQDVLCITVF--DRDFFSPDDFLGRTEIRVADILKETKE--SKGPITKRLLLHEVPTGE 128
Query: 121 VGLKI 125
V +K+
Sbjct: 129 VVVKL 133
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-09
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFE 509
L V ++E +D+ P + N + + +V +G+Q KTK+ T NP WN + F + +
Sbjct: 17 LMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSD-TLNPKWNSSMQFFVKDLEQ 75
Query: 510 EQLFLTVEDRVHASKDEVLGKISLPLH--IFEKRLDHRPVHSR 550
+ L +TV DR S D+ LG+ + + + E + P+ R
Sbjct: 76 DVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKR 118
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-09
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 22/123 (17%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKR--------MNPEWNQVFAF 338
+ V ++KA++L I G+ DPYV+V + YK K EK+ +NP +N+ F F
Sbjct: 17 ITVNIIKARNLKAMDINGTSDPYVKVWL-MYKD--KRVEKKKTVIKKRTLNPVFNESFIF 73
Query: 339 S--KERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVP--------PDSPLAPQW 388
+ ER++ + L + + DK+ + R+D +G++ + P P+A QW
Sbjct: 74 NIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSKPRQPVA-QW 132
Query: 389 YRL 391
+RL
Sbjct: 133 HRL 135
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-09
Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKY-GQKWVRTRTILDTFNPKWNEQYTWEVYD 672
L V ++ AQ L+P KDG+GS+ AY + GQK RTRT NP WNE+ + V D
Sbjct: 2 LVVEVVDAQDLMP---KDGQGSSSAYVELDFDGQK-KRTRTKPKDLNPVWNEKLVFNVSD 57
Query: 673 PCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTL 714
P N L + S R S +G+VRI ++
Sbjct: 58 P------SRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSF 93
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 3e-09
Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 24/126 (19%)
Query: 450 LRVNVIEAQDIVPNDRN--RLPEG----FVKVQVGNQVLKTKICPTPTTNPLWNEDLVFV 503
LR++VIEAQD+V D+ L +G +V V+VG Q K+K+ NP WNE V+
Sbjct: 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVI-KENLNPKWNE--VYE 59
Query: 504 AAEPFEEQLFLTVE----DRVHASKDEVLGKISLPLH-IFEKR-LDHRPVHSRWFNLEKF 557
A L +E D KD+ LG++S+ L + +K +D W LE
Sbjct: 60 AVVDEVPGQELEIELFDEDP---DKDDFLGRLSIDLGSVEKKGFID------EWLPLEDV 110
Query: 558 GFGAIE 563
G +
Sbjct: 111 KSGRLH 116
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 3e-09
Identities = 48/136 (35%), Positives = 68/136 (50%), Gaps = 22/136 (16%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKS 61
K+ + VV A L+ KD G++ P+ V +TKTIP+NLNPVWN+K F+
Sbjct: 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFE-----C 56
Query: 62 HNHL-RIEVSIYHHERRPIPGR----------HFLGRVRIPCSNLVRKGE-EVYQRFPLE 109
HN RI+V ++ E I R FLG+ I L GE +V+ + LE
Sbjct: 57 HNSSDRIKVRVW-DEDDDIKSRLKQKFTRESDDFLGQTIIEVRTL--SGEMDVW--YNLE 111
Query: 110 KKWFLSSVKGEVGLKI 125
K+ S+V G + L I
Sbjct: 112 KRTDKSAVSGAIRLHI 127
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 3e-09
Identities = 35/117 (29%), Positives = 48/117 (41%), Gaps = 26/117 (22%)
Query: 10 AYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEV 69
A DL+ D G + PFA V FLNQ +T+ I + L+P W+Q L+FD + +
Sbjct: 10 ARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFD--------EVELYG 61
Query: 70 SIYHHERRPIP-------------GRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWF 113
S + P P FLGR LV+ E L +WF
Sbjct: 62 SPEEIAQNP-PLVVVELFDQDSVGKDEFLGRSV--AKPLVKLDLEEDFPPKL--QWF 113
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 4e-09
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Query: 286 YLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKR-MNPEWNQVFAFSKERIQ 344
YL V V++A+DL PS + +V+ ++GN RT+ + R NP WN+ F
Sbjct: 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF 60
Query: 345 SSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLED 393
L + ++D+ +D+ LGR LN++ RV D P+ +W+ LE
Sbjct: 61 EDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRV-DDRPVPSRWFSLER 108
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 4e-09
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 286 YLY-VRVVKAKDLPPSSITGSCDPYVEVKMGNYK---GRTKHFEKRMNPEWNQVFAFSKE 341
+L+ +R+V+A++L S G DPYV + N K +T+ +NP W++ F
Sbjct: 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVP 60
Query: 342 RIQSSMLEVFLKDKEMVGRDDYLGRVAFDLN 372
+ + + D+ VG+ D GR + L+
Sbjct: 61 AGEPLWISATVWDRSFVGKHDLCGRASLKLD 91
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 6e-09
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 14/120 (11%)
Query: 282 EQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKM-----GNYKGRTKHFEKRMNPEWNQVF 336
Q L V V K ++LPP + DPYV + + + + +T + +NP +++ F
Sbjct: 13 SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETF 72
Query: 337 AF--SKERIQSSMLEVFLKDKE--MVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLE 392
F S E ++ L+V +K+ + + LG+V DL+++ S QWY L
Sbjct: 73 EFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDL-----DLSKGFTQWYDLT 127
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 8e-09
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 22/125 (17%)
Query: 446 KLWY------LRVNVIEAQDIVPNDRNRLPEGFVKV------QVGNQVLKTKICPTPTTN 493
+LWY L V V++A+D+ P D L +VKV ++ +TK T N
Sbjct: 8 QLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKR-RTKTVK-KTLN 65
Query: 494 PLWNEDLVF--VAAEPFEE-QLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSR 550
P WN+ + V E +E L +TV D +++ LG++ + L + LD P
Sbjct: 66 PEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLA--DALLDDEP---H 120
Query: 551 WFNLE 555
W+ L+
Sbjct: 121 WYPLQ 125
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 8e-09
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 289 VRVVKAKDLPPSSITGSCDPYVEVKMGNY-KGRTKHFEKRMNPEWNQVFAFS----KERI 343
+ + KA DL G DPYV V + KGRT +NP W++V ++I
Sbjct: 5 LHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKI 64
Query: 344 QSSMLEVFLKDKEMVGRDDYLGRVAFDLNEV 374
LEV D E VG+D LG V +++++
Sbjct: 65 ---TLEVM--DYEKVGKDRSLGSVEINVSDL 90
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-08
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 15/112 (13%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNE--DLVFVAAEP 507
+ + ++E +++ P D N L + +VK ++GN+ K+K+C T NP W E DL
Sbjct: 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSK-TLNPQWLEQFDLHL----- 55
Query: 508 FEEQ---LFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEK 556
F++Q L + V D+ KDE +G+ + L L HS LE
Sbjct: 56 FDDQSQILEIEVWDKDTGKKDEFIGRCEIDL----SALPREQTHSLELELED 103
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-08
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 13/117 (11%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGN---YKGRTKHFEKRMNPEWNQVFAFSKERI 343
L + + + ++L G+ DPYV+ K G YK +T + K +NP W++ F E +
Sbjct: 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIY--KNLNPVWDEKFTLPIEDV 59
Query: 344 QSSM-LEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGK 399
+ ++VF D + DD++G DL+ + P + L +LED +
Sbjct: 60 TQPLYIKVF--DYDRGLTDDFMGSAFVDLSTLELNKPTEVKL-----KLEDPNSDED 109
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-08
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 15/117 (12%)
Query: 265 GRGWMSGERFTSTYDLVEQMSYLYVRVVKAKDLPPSSIT-GSCDPYVEVKM----GNYKG 319
GR W F+ YDL E+ L V ++KA++LPP + CDP+V+V +
Sbjct: 1 GRLW-----FSVQYDLEEE--QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSL- 52
Query: 320 RTKHFEKRMNPEWNQVFAF--SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEV 374
++K K NP +++ F F S + +Q L + + D + R +G V F L ++
Sbjct: 53 QSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDL 109
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 2e-08
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQ--VGNQVLKTK--ICPTPTTNPLWNEDLVF-VA 504
L V V++A+++ P+D L + +VKV G + LK K T NP++NE F V
Sbjct: 16 LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVP 75
Query: 505 AEPFEE-QLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDH 544
AE EE L +TV D+ ++EV+G++ L + L+H
Sbjct: 76 AEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEH 116
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-08
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 634 GSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFD 683
S+D Y + G + V+TR I NP WNE+ T V +P + L VFD
Sbjct: 20 TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFD 69
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-08
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYK-GRTKHFEKRMNPEWNQVFAFSKERIQS 345
LY+R+V+ K+LP ITGS DPY VK+ N RT K +NP W + +
Sbjct: 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFH 61
Query: 346 SMLEVFLKDKEMVGRDDYLGRVA 368
+ + ++ D++ + RDD +G+V+
Sbjct: 62 T-VSFYVLDEDTLSRDDVIGKVS 83
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-08
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLS-----KTKTIPKNLNPVWNQKLLFDF 56
KL+V V +L P D P+ + L S KT NLNPV+++ F+F
Sbjct: 17 KLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDET--FEF 74
Query: 57 DQTKSHNHLR-IEVSIYHHERRPIPGRHFLGRVRIPCSNL 95
+ R ++V++ + + + LG+V I S+L
Sbjct: 75 PVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDL 114
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-08
Identities = 33/106 (31%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
Query: 274 FTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKM---GNYKGRTKHFEKRMNP 330
F+ YD + M L V++++A++L P +G+ DPY +V++ + ++K +K +NP
Sbjct: 7 FSLEYD--KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNP 64
Query: 331 EWNQVFAF--SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEV 374
E+++ F F + + LEV L D + RD+ +G V L EV
Sbjct: 65 EFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEV 110
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 6e-08
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 274 FTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGR---TKHFEKRMNP 330
F+ YD Q + L V +++A DLP + G+ DPYV+V + K + TK K +NP
Sbjct: 7 FSLDYDF--QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNP 64
Query: 331 EWNQVFAFS--KERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEV 374
+N+ F F + + L + D + + D +G V L V
Sbjct: 65 VFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTV 110
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 8e-08
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 3 LVVEVVDAYDLMPKD------GEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDF 56
L + V++A DL+ KD +G + P+ V Q K+K I +NLNP WN+ +++
Sbjct: 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNE--VYEA 60
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGR-HFLGRVRIPCSNLVRKGEEVYQRFPLE 109
+ +E+ ++ + P + FLGR+ I ++ +KG + + PLE
Sbjct: 61 VVDEVPG-QELEIELFDED----PDKDDFLGRLSIDLGSVEKKG-FIDEWLPLE 108
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 9e-08
Identities = 41/139 (29%), Positives = 57/139 (41%), Gaps = 28/139 (20%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKG-----RTKHFEKRMNPEWNQVFAF--- 338
L VRV++ DL + G+CDPY V + RTK +K NP++++ F F
Sbjct: 2 LSVRVIECSDLALKN--GTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVT 59
Query: 339 ---SKERIQSSM---------LEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAP 386
S E+ Q M L V L M G D +LG V +P R +
Sbjct: 60 IDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEV-----RIPLRGLDLQAGSH 114
Query: 387 Q-WYRLEDRRGEGKVRGQT 404
Q WY L+ R + G
Sbjct: 115 QAWYFLQPREEKSTPPGTR 133
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-07
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVY 671
G L+V ++ A GL D G +D +C+ + ++T TI T NP+WN+ +T+ +
Sbjct: 1 GFLQVKVIRASGLAA---ADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIK 57
Query: 672 DPCTVITLGVFD 683
D V+ + V+D
Sbjct: 58 DIHDVLEVTVYD 69
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 1e-07
Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 20/139 (14%)
Query: 611 VGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWV--RTRTILDTFNPKWNEQYTW 668
+G+L V I A+GL + G + D Y + RT+ DT NP WNE
Sbjct: 1 IGVLAVTIKSARGLKGSDIIGG--TVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYI 58
Query: 669 EVYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTH-SYPLL 727
V + L V+D +K+ D IG LS+L + + + LL
Sbjct: 59 LVNSLTEPLNLTVYDF-----NDKRK------DKLIGTAEFDLSSLLQNPEQENLTKNLL 107
Query: 728 VLHPHGVKKMGELQLAIRF 746
K +GEL +RF
Sbjct: 108 R----NGKPVGELNYDLRF 122
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 2e-07
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 22/108 (20%)
Query: 1 MKLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSK-----TKTIPKNLNPVWNQKLLF- 54
L ++ A L D G + P+ +++ L SK TKT+ K NP +N+ L +
Sbjct: 15 SALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYY 74
Query: 55 ---DFDQTKSHNHLRIEV---SIYHHERRPIPGRHFLGRVRIPCSNLV 96
+ D + LR+ V + ++ FLG RIP L
Sbjct: 75 GITEEDIQRK--TLRLLVLDEDRFGND--------FLGETRIPLKKLK 112
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 2e-07
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 30/123 (24%)
Query: 286 YLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAF------- 338
Y+Y +A+DL + +G DP+ V N T+ ++ ++P W+Q F
Sbjct: 6 YIY----QARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYG 61
Query: 339 SKERIQSSM----LEVFLKDKEMVGRDDYLGR------VAFDLNEVPTRVPPDSPLAPQW 388
S E I + +E+F D++ VG+D++LGR V DL E D P QW
Sbjct: 62 SPEEIAQNPPLVVVELF--DQDSVGKDEFLGRSVAKPLVKLDLEE-------DFPPKLQW 112
Query: 389 YRL 391
+ +
Sbjct: 113 FPI 115
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135 |
| >gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-07
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYK-GRTKHFEKRMNPEWNQVFAFSKER--I 343
L +R+++AK+LP G+ DPY V + + RTK EK +NP W + F F +
Sbjct: 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDV 57
Query: 344 QSSMLEVFLKDKEMVGRDDYLGRVAFD 370
L + KDK RD +G+VA
Sbjct: 58 TFFTLSFYNKDKRSKDRDIVIGKVALS 84
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-07
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 286 YLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTK-HFEKRMNPEWNQVFAFS-KERI 343
L V V+KA++LP DPY +++G +TK F +PEW++ F E
Sbjct: 2 TLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDK 61
Query: 344 QSSM-LEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRG 402
+ + + VF DK + D +G DL+ D WY L +G+ G
Sbjct: 62 KPILKVAVFDDDKR---KPDLIGDTEVDLSPALKEGEFD-----DWYELTL---KGRYAG 110
Query: 403 Q 403
+
Sbjct: 111 E 111
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 7/107 (6%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFL---NQLSKTKT--IPKNLNPVWNQKLLFDF 56
+L V V +A +L G++ F + L ++ SK KT + K++NPVWN ++D
Sbjct: 28 ELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDG 87
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVY 103
+ + +E++++ H++ + FLG VR+ G+ V
Sbjct: 88 VSPEDLSQACLELTVWDHDK--LSSNDFLGGVRLGLGTGKSYGQAVD 132
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-07
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 11/128 (8%)
Query: 3 LVVEVVDAYDLMPKD--GEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTK 60
L V VV+A DL KD G+G + P+A + Q KT+TIP LNP WN F
Sbjct: 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEF---PIF 59
Query: 61 SHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKG--EEVYQRFPLE--KKWFLSS 116
S + +++ ++ +R G+ +LG I + G + + L+ + S
Sbjct: 60 SAQNQLLKLILWDKDR--FAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSV 117
Query: 117 VKGEVGLK 124
V GE+ L+
Sbjct: 118 VSGEIHLQ 125
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-07
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLN--QLSKTKTIPKNLNPVWNQKLLFDFDQTK 60
L V+V+ A +L D G + PF + +LN ++ KTKTI K LNPVWN+ ++
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKF-YLNGEKVFKTKTIKKTLNPVWNESFEVPV-PSR 58
Query: 61 SHNHLRIEV 69
L++EV
Sbjct: 59 VRAVLKVEV 67
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-07
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 9/126 (7%)
Query: 289 VRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAF-----SKERI 343
V V++A+ L +G+ D YV +++G K T EK +P W + +F
Sbjct: 3 VTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNG 62
Query: 344 QSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRG-EGKVRG 402
+ L++ + + ++G D +LG+V+ LN++ +W++LE + G + K RG
Sbjct: 63 NRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDED---KGRRRTRWFKLESKPGKDDKERG 119
Query: 403 QTMLAI 408
+ + I
Sbjct: 120 EIEVDI 125
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-07
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 11/91 (12%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTK------HFEKR-MNPEWNQVFAFS 339
L V V+KA+ LP ++G DPYV+V + Y G+ + H +K +NP +N+ F F
Sbjct: 17 LTVVVLKARHLPKMDVSGLADPYVKVNL--YYGKKRISKKKTHVKKCTLNPVFNESFVFD 74
Query: 340 --KERIQSSMLEVFLKDKEMVGRDDYLGRVA 368
E ++ +E + D + V +++ +GR+
Sbjct: 75 IPSEELEDISVEFLVLDSDRVTKNEVIGRLV 105
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-07
Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 6/117 (5%)
Query: 289 VRVVKAKDLPPSSITGSCDPYVEVKM-GNYKGRTK-HFEKRMNPEWNQVFAFS-KERI-- 343
+ ++ A+DL ++ G Y V + ++K T + NP WN+ F ER+
Sbjct: 4 ITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQ 63
Query: 344 -QSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGK 399
L + + + D +G V L ++ P L Y+L G+ +
Sbjct: 64 QGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQ 120
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 7e-07
Identities = 32/113 (28%), Positives = 45/113 (39%), Gaps = 19/113 (16%)
Query: 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFL----NQLSKTKTIPKNLNPVWNQKLLFD--- 55
L V V++ DL K G+ PFA V +TK K NP +++ F+
Sbjct: 1 LSVRVLECRDLALKSN-GTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59
Query: 56 -FDQTKSHNHLRIE--------VSIYHHERRPIPGRHFLGRVRIPCSNLVRKG 99
F K + E V ++H + G FLG VRIP L + G
Sbjct: 60 GFSYEKKSFKVEEEDLEKSELRVELWHAS--MVSGDDFLGEVRIPLQGLQQAG 110
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 7e-07
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 25/108 (23%)
Query: 287 LYVRVVKAKDLPP--SSITGSC------------DPYVEVKMGNYKGRTKHFEKRMNPEW 332
++ +A+DLP S I + DPYVEV K +T + NPEW
Sbjct: 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEW 61
Query: 333 NQVFAFSK------ERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEV 374
N+ F + ERI+ + ++D + VG DD +G DL+++
Sbjct: 62 NEQIVFPEMFPPLCERIK-----IQIRDWDRVGNDDVIGTHFIDLSKI 104
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 7e-07
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 279 DLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKG-RTKHFEKRMNPEWNQVFA 337
++VE YL + + ++LP S G DP+V++ + +TK +K +NP WN+ F
Sbjct: 1034 EMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFT 1093
Query: 338 FSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVP 379
+L + + D + ++D LG DL+++
Sbjct: 1094 IEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGT 1135
|
Length = 1227 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 9e-07
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 18/135 (13%)
Query: 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLS-------KTKTIPKNLNPVWNQKLLFD 55
L V+V+ DL KD G++ P+ ++ + +TKTI K LNP WN++ F
Sbjct: 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR 61
Query: 56 FDQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLV-----RKGEEVYQRFPLEK 110
+ + L EV E R + FLG+V +P +NL + ++ + L
Sbjct: 62 VN--PREHRLLFEV---FDENR-LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRP 115
Query: 111 KWFLSSVKGEVGLKI 125
+ S VKG + L +
Sbjct: 116 RSSKSRVKGHLRLYM 130
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-06
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDP 673
+ + ++ AQGL+ KD G++D Y + G+ RT+TI NP WNE++ +E ++
Sbjct: 3 ISITVVCAQGLIA---KDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS 59
Query: 674 CTVITLGVFD 683
I + V+D
Sbjct: 60 SDRIKVRVWD 69
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-06
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 469 PEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASKDEVL 528
P +V++ VG K+K+ T NP+W E F+ P ++L + V+D L
Sbjct: 21 PSPYVELTVGKTTQKSKVK-ERTNNPVWEEGFTFLVRNPENQELEIEVKDDKTGK---SL 76
Query: 529 GKISLPLHIFEKRLDHRPVHSRWFNLEKFG 558
G ++LPL K D + F L+ G
Sbjct: 77 GSLTLPLSELLKEPDL--TLDQPFPLDNSG 104
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 2e-06
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 19/103 (18%)
Query: 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFL---NQLSK--TKTIPKNLNPVWNQKLLFDFD 57
L+V V+ A DL P+D +P+ +V L ++ SK TKT+ K LNP WNQ +
Sbjct: 18 LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEY--- 74
Query: 58 QTKSHNHLR------IEVSIYHHERRPIPGRHFLGRVRIPCSN 94
S+ +EV+++ ++R FLG V I ++
Sbjct: 75 ---SNVRRETLKERTLEVTVWDYDR--DGENDFLGEVVIDLAD 112
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-06
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGN---YKGRTKHFEKRMNPEWNQVFAFSKERI 343
L V V+ A++LP + G DP+V+ + +K TK +K +NP WN+ F
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFK--TKTIKKTLNPVWNESFEVPVPSR 58
Query: 344 QSSMLEVFLKDKEMVGRDDYLGRVAFDLNEV 374
++L+V + D + G+DD LG DL+++
Sbjct: 59 VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDL 89
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 3e-06
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFE 509
L V V++AQD++P D +V++ Q +T+ P NP+WNE LVF ++P
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPK-DLNPVWNEKLVFNVSDPSR 60
Query: 510 EQ-LFLTVE---DRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEK 556
L L V DR + LG++ + F + + + LEK
Sbjct: 61 LSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVV---QRYPLEK 108
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-06
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 449 YLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPF 508
+L+V VI A + D + F +++ N L+T T NP WN+ F +
Sbjct: 2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTI-YKTLNPEWNKIFTF-PIKDI 59
Query: 509 EEQLFLTV--EDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNL 554
+ L +TV ED+ E LGK+++PL L + +W+ L
Sbjct: 60 HDVLEVTVYDEDKDKKP--EFLGKVAIPL------LSIKNGERKWYAL 99
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-06
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKS 61
+L V++A DL PKD G++ PF V + Q +T + K+ P WN+ F+ +
Sbjct: 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGAD 60
Query: 62 HNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWF 113
+ L +EV + + FLG+V L Q+ E+ WF
Sbjct: 61 -SPLSVEVWDWDLVSK----NDFLGKVVFSIQTL--------QQAKQEEGWF 99
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 3e-06
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 9 DAYDLMPKDGEGSASPFAEVDFLN--QLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLR 66
A DL +G G P+ V +N +T TI LNPVW++ L T + +
Sbjct: 9 KANDLKNLEGVGKIDPYVRV-LVNGIVKGRTVTISNTLNPVWDEVLYVPV--TSPNQKIT 65
Query: 67 IEVSIYHHERRPIPGR-HFLGRVRIPCSNLVRKGEEVY 103
+EV Y G+ LG V I S+L++K E+
Sbjct: 66 LEVMDYEKV-----GKDRSLGSVEINVSDLIKKNEDGK 98
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 3e-06
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV-GNQVLKTKICPTPTTNPLWNEDLVFVAAEPF 508
L V+VI A+++ DRN + FVK + G +V KTK T NP+WNE
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTI-KKTLNPVWNESFEVPVPSRV 59
Query: 509 EEQLFLTVEDRVHASKDEVLGKISLPL 535
L + V D KD++LG + L
Sbjct: 60 RAVLKVEVYDWDRGGKDDLLGSAYIDL 86
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 40/136 (29%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFA--EVDFLNQLSK----------------------- 36
L V V++A L+ KD G + P+ + ++
Sbjct: 29 VLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAK 88
Query: 37 ----TKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPC 92
T+ P+ LNPVWN+ F+ + + L ++ I+ H FLG V IP
Sbjct: 89 SIKVTEVKPQTLNPVWNETFRFEVEDVSNDQ-LHLD--IWDH------DDDFLGCVNIPL 139
Query: 93 SNLVRKGEEVYQRFPL 108
+L G + F L
Sbjct: 140 KDLPSCGLD--SWFKL 153
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-06
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 450 LRVNVIEAQDIVPNDRNRL--PEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEP 507
LRV+V+EA+D+ DR+ + + + VG Q KT+ P T NP WN F
Sbjct: 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPN-TLNPKWNYWCEFPIFSA 61
Query: 508 FEEQLFLTVEDRVHASKDEVLGKISLPL 535
+ L L + D+ + + LG+ + L
Sbjct: 62 QNQLLKLILWDKDRFAGKDYLGEFDIAL 89
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 4e-06
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 610 PVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQ 665
P + +V + A+GL +D G D Y I K + VR+ DT +P+++ Q
Sbjct: 1 PQVVTQVHVHSAEGL---SKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQ 53
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 5e-06
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Query: 289 VRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSML 348
V V A+ L G DPYV +K R+ + ++PE++ F +++ +S +
Sbjct: 7 VHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIK 66
Query: 349 -EVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQ 403
+V+ + ++ D++LG+ + ++ PL + R G+V G
Sbjct: 67 IQVW--NSNLL-CDEFLGQATLSADPNDSQTLRTLPLRKR-----GRDAAGEVPGT 114
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 5e-06
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 17/72 (23%)
Query: 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNE--------- 664
L V +L A GL D STD Y +G + RT I + NP+WN
Sbjct: 30 LTVTVLRATGL----WGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVEL 85
Query: 665 ----QYTWEVYD 672
+ +EV+D
Sbjct: 86 SPGGKLRFEVWD 97
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 6e-06
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 14/119 (11%)
Query: 630 KDGRGSTDAYCIAKYGQKWV-RTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLG 688
+D G++D Y KYG K V +++TI NP W+E++T + D + + VFD
Sbjct: 15 RDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFD----- 69
Query: 689 GGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFT 747
G + D +G + LSTLE ++ L P+ + +G + L + T
Sbjct: 70 ---YDRGLT---DDFMGSAFVDLSTLELNKPTEVKLKL--EDPNSDEDLGYISLVVTLT 120
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 7e-06
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 450 LRVNVIEAQDIVPNDR-NRLPEGFVKVQVGNQVLKTKICPTPTTNPLWN-EDLVFVAAEP 507
L+V V+ A+D+ DR + L + FV+V+ G+ KT + + NP+WN E F +
Sbjct: 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVV-KKSLNPVWNSEWFRFEVDDE 59
Query: 508 --FEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVH--SRWF 552
+E L + V D S ++ +GK+ + L+ L V S WF
Sbjct: 60 ELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPL---LLKDSVSQISGWF 105
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 7e-06
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 612 GILEVGILGAQGLLP--MKMKD-GRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTW 668
G+L + ++ AQ L+ + +G +D Y I + G + +++ I + NPKWNE Y
Sbjct: 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEA 60
Query: 669 EVYD-PCTVITLGVFD 683
V + P + + +FD
Sbjct: 61 VVDEVPGQELEIELFD 76
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 7e-06
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 630 KDGRGSTDAYCIAKYGQKWV-RTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLG 688
KD GS+D YCI K + + RT T+ T NP W E+YT + ++ V D L
Sbjct: 15 KDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLS 74
Query: 689 GGEKQNGSSAVRDSRIGKVRIRLSTLEAH 717
RD IGKV + + AH
Sbjct: 75 -----------RDDVIGKVSLTREVISAH 92
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 8e-06
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVY 671
G+L V ++ A+ L K + G+G +D Y I G + +T+TI +T NPKWN + ++
Sbjct: 1 GVLRVHVVEAKDLAA-KDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIF 59
Query: 672 DP-CTVITLGVFD 683
++ L ++D
Sbjct: 60 SAQNQLLKLILWD 72
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 8e-06
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 291 VVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERI--QSSML 348
VV K+LP + G D +V K +T+ E +NP WN+ F + L
Sbjct: 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESL 59
Query: 349 EVFLKDKEMVGRDDYLGRVAFDLNEV 374
E+ +KD E VGR+ +G L ++
Sbjct: 60 EIVVKDYEKVGRNRLIGSATVSLQDL 85
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-05
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAF 338
L+V + AK+LP + T PYVE+ +G ++K E+ NP W + F F
Sbjct: 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTF 53
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-05
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 20 GSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFD-QTKSHNHLRIEVSIYHHERRP 78
G A+V F KT+ + LNPVWN+ F++ +E+ + +E+
Sbjct: 13 GKGDRIAKVTFRGVKKKTRVLENELNPVWNET--FEWPLAGSPDPDESLEIVVKDYEK-- 68
Query: 79 IPGRH-FLGRVRIPCSNLVRKGE 100
GR+ +G + +LV +G
Sbjct: 69 -VGRNRLIGSATVSLQDLVSEGL 90
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFE-KRMNPEWNQVFAFSKERIQS 345
L V ++ AK L + G DPYV ++ + ++K + NPEWN+ F F+ E
Sbjct: 3 LEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGW 62
Query: 346 S-MLEVFLK--DKEMVGRDDYLGRVAFDLNEV 374
++ L+ DK+ DD++G L +
Sbjct: 63 GGDTKLILRIMDKDNFSDDDFIGEATIHLKGL 94
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 26/121 (21%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKT-IPKNLNPVWNQKLLF----DF 56
L V V++A DL+P D F + NQ+ +T+ +N NP WN++L+F F
Sbjct: 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF 60
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGRHF-LGRVRIPCSNLVRKGEEVYQRF---PLEKKW 112
+ +HL + V E R P + LGR IP + ++ +R P+ +W
Sbjct: 61 E-----DHLILSV-----EDRVGPNKDEPLGRAVIPLN-------DIERRVDDRPVPSRW 103
Query: 113 F 113
F
Sbjct: 104 F 104
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 12/50 (24%), Positives = 19/50 (38%)
Query: 902 WAEAVHPDELDEEFDTFPTSKTHDIVRIRYDRLRSVAGRIQTVVGDIATQ 951
W EAV PD L + ++ D V L S+ +G++
Sbjct: 77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELECA 126
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 17/108 (15%)
Query: 621 AQGLLPMKMKDGRGSTDAYCIAKYG-QKWVRTRTILDTFNPKWNEQYTWEVY-DPCTVIT 678
+ L PM D G +D Y + G +K+ +++ T NP+W EQ+ ++ D ++
Sbjct: 9 GKNLPPM---DDNGLSDPYVKFRLGNEKY-KSKVCSKTLNPQWLEQFDLHLFDDQSQILE 64
Query: 679 LGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPL 726
+ V+D K G +D IG+ I LS L + ++ L
Sbjct: 65 IEVWD--------KDTGK---KDEFIGRCEIDLSALPREQTHSLELEL 101
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEV-----KMGNYKGRTKHFEKRMNPEWNQVFAF--S 339
L V +++ +L G DP+V++ K +T+ +K +NPE+N+ F +
Sbjct: 15 LIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIK 74
Query: 340 KERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLN 372
+ LE+ + DK++ +DY+G + +N
Sbjct: 75 HSDLAKKTLEITVWDKDIGKSNDYIGGLQLGIN 107
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 16/121 (13%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVK--MGNY---KGRTKHFEKRMNPEWNQVFAF--S 339
L V +++AK+L + G DPYV++ K +T ++ +NP +N+ F+F
Sbjct: 17 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVP 76
Query: 340 KERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRV--------PPDSPLAPQWYRL 391
E+IQ L V + D + +G++D +G+V N + P P+A QW+ L
Sbjct: 77 FEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLASPRRPIA-QWHTL 135
Query: 392 E 392
+
Sbjct: 136 Q 136
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 5e-05
Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 13/132 (9%)
Query: 3 LVVEVVDAYDLMPKDGEGSASPF--AEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTK 60
L+V+ + A L + GS++P+ E+D Q ++ T NP W++ F F+ +
Sbjct: 1 LLVKNIKANGL--SEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEH--FLFELSP 56
Query: 61 SHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWF-LSSVKG 119
+ L E +Y + ++ FLG +P + +RK Q FPL+ + + SV G
Sbjct: 57 NSKELLFE--VYDNGKKSDSK--FLGLAIVPF-DELRKNPSGRQIFPLQGRPYEGDSVSG 111
Query: 120 EVGLK-IYISPQ 130
+ ++ +++ P
Sbjct: 112 SITVEFLFMEPA 123
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 6e-05
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 45 NPVWNQKLLFDFD-QTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKG 99
NP WN+ L F D + L + + +Y RP G +G VR+P +L+
Sbjct: 46 NPTWNETLRFPLDERLLQQGRLALTIEVYCE--RPSLGDKLIGEVRVPLKDLLDGA 99
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 7e-05
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Query: 451 RVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVF-----VAA 505
+V V++A+ ++ ++ + +V +Q+G + T + TT+P+W E+ F ++
Sbjct: 2 QVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEK-TTSPVWKEECSFELPGLLSG 60
Query: 506 EPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLE 555
L LTV R D+ LG++S+PL+ ++ R RWF LE
Sbjct: 61 NGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRT--RWFKLE 108
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 8e-05
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSH 62
L V VV A L + P EV N TK I + NP WNQ F D+ +
Sbjct: 2 LYVRVVKARGLPANSND----PVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGS 57
Query: 63 NHLRIEVSIYHHERRPIPGRHFLGRVRI 90
+EVS+ ++ FLG V
Sbjct: 58 ---TLEVSV--WDKDK-AKDDFLGGVCF 79
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 8e-05
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV--GNQV---LKTKICPTPTTNPLWNEDLVFVA 504
L +I A+ + D N L + +VK+ + G L+TK T NP +NE L +
Sbjct: 17 LHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHK-TRNPEFNETLTYYG 75
Query: 505 AEPFEEQ---LFLTV--EDRVHASKDEVLGKISLPL 535
+ Q L L V EDR ++ LG+ +PL
Sbjct: 76 ITEEDIQRKTLRLLVLDEDRFG---NDFLGETRIPL 108
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 9e-05
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 1 MKLVVEVVDAYDLMPKDGEGSASPFAEVDFL---NQLSKTKTIPKNLNPVWNQKLLFD 55
L ++++ A +L KD G++ PF ++ L +TK KNLNP WN+ LF+
Sbjct: 16 STLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFE 73
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 18/126 (14%)
Query: 438 RSKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQV-----GNQVLKTKICPTPTT 492
R + +S K L V V EA++++P D N L + +VK+++ KTK T
Sbjct: 3 RIYLKISVKDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTI-KKTL 61
Query: 493 NPLWNEDLVFVAAEPFEEQLFLTVE----DRVHASKDEVLGKISLPLHIFEKRLDHRPVH 548
NP+WNE F +P ++ L++E DR ++++ +G +S + K
Sbjct: 62 NPVWNETFTF-DLKPADKDRRLSIEVWDWDR--TTRNDFMGSLSFGVSELIK-----MPV 113
Query: 549 SRWFNL 554
W+ L
Sbjct: 114 DGWYKL 119
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFE 509
L+V V+ ++ D + +V + +GNQ +KT++ NP+WNE+L P
Sbjct: 4 LKVRVVRGTNLAVRDFTS-SDPYVVLTLGNQKVKTRVIKK-NLNPVWNEELTLSVPNP-M 60
Query: 510 EQLFLTVEDRVHASKDEVLG 529
L L V D+ SKD+ +G
Sbjct: 61 APLKLEVFDKDTFSKDDSMG 80
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEV-----KMGNYKGRTKHFEKRMNPEWNQVF---AF 338
L+V V +AK+LP G+ D +V+ K K +T +K +NP WN F
Sbjct: 29 LHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGV 88
Query: 339 SKERIQSSMLEVFLKDKEMVGRDDYLG 365
S E + + LE+ + D + + +D+LG
Sbjct: 89 SPEDLSQACLELTVWDHDKLSSNDFLG 115
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-04
Identities = 41/207 (19%), Positives = 77/207 (37%), Gaps = 36/207 (17%)
Query: 466 NRLPEGFVKVQVGNQVL-KTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASK 524
N + ++ V ++V+ KT++ T NP+WNE ++ F + L L++ D
Sbjct: 456 NGTVDPYITVTFSDRVIGKTRVKKN-TLNPVWNETF-YILLNSFTDPLNLSLYDFNSFKS 513
Query: 525 DEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFSSRVHLRVCLEG 584
D+V+G L L + L PV + E +++ R+ +
Sbjct: 514 DKVVGSTQLDLAL----LHQNPVKK---------------NELYEFLRNTKNVGRLTYDL 554
Query: 585 GYH--VLDESTMYISDQRPTAKQLWKPPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIA 642
+ + D+ + S + GIL+V + + L + D
Sbjct: 555 RFFPVIEDKKELKGSVEPLE-----DSNTGILKVTLREVKAL-----DELSSKKDNKSAE 604
Query: 643 KY--GQKWVRTRTILDTFNPKWNEQYT 667
Y ++ T + T +P WN QY
Sbjct: 605 LYTNAKEVYSTGKLKFTNHPSWNLQYN 631
|
Length = 1227 |
| >gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 9/91 (9%)
Query: 20 GSASPFAEVDFLNQL-SKTKTIPKNLNPVWNQKL-LFDFDQTKSHNHLRIEVSIYHHERR 77
G SP+AE+ +L T+ K NP WN D+ KS + + V
Sbjct: 11 GLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKS--RVTVVVKDDRDRHD 68
Query: 78 PIPGRHFLGRVRIPCSNLVRKGEEVYQRFPL 108
P+ LG V I ++L+ Q FPL
Sbjct: 69 PV-----LGSVSISLNDLIDATSVGQQWFPL 94
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 5 VEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNH 64
+ +V+ +L P D G + P+ + N+ K+K K LNP W ++ FD +
Sbjct: 4 IVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQ--FDLHLFDDQSQ 61
Query: 65 LRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRK 98
+ +E+ ++ + F+GR I S L R+
Sbjct: 62 I-LEIEVWD--KDTGKKDEFIGRCEIDLSALPRE 92
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 25/138 (18%)
Query: 452 VNVIEAQDIVPNDRNRLPEGFVKV---QVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPF 508
+ ++ A+++ + N L + +V + ++ KT+ T NP W+E F P
Sbjct: 5 IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYD-TLNPRWDE--EFELEVPA 61
Query: 509 EEQLFL--TVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADR 566
E L++ TV DR K ++ G+ SL +LD + +FG + +
Sbjct: 62 GEPLWISATVWDRSFVGKHDLCGRASL-------KLDPK----------RFGDDGLPREI 104
Query: 567 RKELKFSSRVHLRVCLEG 584
+L R+ LRV +EG
Sbjct: 105 WLDLDTQGRLLLRVSMEG 122
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV-GNQVLKTKICPTPTTNPLWNEDLVFVAAEPF 508
L +++ E +++ DR + +VK + G V K+K NP+W+E + E
Sbjct: 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTI-YKNLNPVWDEKFT-LPIEDV 59
Query: 509 EEQLFLTVEDRVHASKDEVLGKISLPL 535
+ L++ V D D+ +G + L
Sbjct: 60 TQPLYIKVFDYDRGLTDDFMGSAFVDL 86
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSK---TKTIPKNLNPVWNQKLLFDFDQT 59
L V ++ A DL D G++ P+ +V L K TK K LNPV+N+ F +
Sbjct: 18 LTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYS 77
Query: 60 KSHNHLRIEVSIYHHERRPIPGRH-FLGRVRIPCSNLVRKGEEV 102
+ N + S+Y +R +H +G VR+P V G
Sbjct: 78 ELGNK-TLVFSVYDFDRF---SKHDLIGEVRVP-LLTVDLGHVT 116
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 24/100 (24%)
Query: 287 LYVRVVKAKDL-PPSSITGSCDPYVEVKMGNYK--GRTKHFEKRMNPEWNQVFAFSKERI 343
L V + A+ L I G+ DPYV + N + RTK + NP WN+ +K +
Sbjct: 4 LAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNE----TKYIL 59
Query: 344 QSSM-----LEVF-----LKDKEMVGRDDYLGRVAFDLNE 373
+S+ L V+ KDK +G FDL+
Sbjct: 60 VNSLTEPLNLTVYDFNDKRKDKL-------IGTAEFDLSS 92
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 14/102 (13%)
Query: 279 DLVEQMSYLYVRVVKAKDLPPS--SITGSCDPYVEVKM-GNYKGRTKHFEKRMNPEWNQ- 334
D + + V++ A+ L S +I G+ DPY+ V G+T+ + +NP WN+
Sbjct: 430 DSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNET 489
Query: 335 ----VFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLN 372
+ +F+ + + L ++ D D +G DL
Sbjct: 490 FYILLNSFT-DPLN---LSLY--DFNSFKSDKVVGSTQLDLA 525
|
Length = 1227 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 11/110 (10%)
Query: 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSH 62
L V + A +L SP+ E+ K+K + NPVW + F F
Sbjct: 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEG--FTFLVRNPE 59
Query: 63 N-HLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVY-QRFPLEK 110
N L IEV + LG + +P S L+++ + Q FPL+
Sbjct: 60 NQELEIEVKDDKTGKS-------LGSLTLPLSELLKEPDLTLDQPFPLDN 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Query: 1 MKLVVEVVDAYDLMP--KDGEGSASPFAEVDFL------NQLSKTKTIPKN-LNPVWNQK 51
+ L ++++ L D P+ EV+ + KTK + N NPVWN+
Sbjct: 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNET 61
Query: 52 LLFDF 56
FD
Sbjct: 62 FEFDV 66
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 10/124 (8%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFA--EVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQT 59
K+ + V+ A L +D PFA VD Q T K L+P WN+ FD
Sbjct: 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDG-GQTHSTDVAKKTLDPKWNEH--FDLTVG 57
Query: 60 KSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEK--KWFLSSV 117
S I + ++ ++ + FLG VRI + ++ + YQR L K K SV
Sbjct: 58 PSSI---ITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSV 114
Query: 118 KGEV 121
+G++
Sbjct: 115 RGKI 118
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123 |
| >gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 287 LYVRVVKAKDLPPSSI-TGSCDPYVEV---KMGNYKGRTKHFEKRMNPEWNQ--VFAFSK 340
L V + +A DLP + TGS DPYV K G T+ K +NP W + +
Sbjct: 3 LVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTP 62
Query: 341 ERIQSSM-LEVFLKDKEMVGRDDYLGRVAFDLNE 373
+ +++ L L D + DD LGRV DL E
Sbjct: 63 DEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKE 96
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111 |
| >gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 3e-04
Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 448 WYLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVF 502
+ LR + +A+D++ D++ L + F +V NQ +T++ T +P W++ L+F
Sbjct: 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKE-TLSPTWDQTLIF 54
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135 |
| >gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 17/109 (15%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFL-----NQLSKTKTIPKNLNPVWNQKLLFDF 56
KL V V++ DL K+G + P+A V + +TK K NP +++ FD
Sbjct: 1 KLSVRVIECSDLALKNG--TCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDV 58
Query: 57 DQTKSHNHLRIEVSIYHHERR----------PIPGRHFLGRVRIPCSNL 95
S + E+ E+ G FLG VRIP L
Sbjct: 59 TIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGL 107
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 17/97 (17%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV-------GNQVLKTKICPTPTTNPLWNEDLVF 502
L + +I A+D+ + F K++V + T + TNP WNE L F
Sbjct: 2 LEITIISAEDL------KNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRF 55
Query: 503 V--AAEPFEEQLFLTVE--DRVHASKDEVLGKISLPL 535
+ +L LT+E + D+++G++ +PL
Sbjct: 56 PLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPL 92
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 23 SPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLF 54
P+ EV F Q KT + NP WN++++F
Sbjct: 36 DPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVF 67
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-04
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 15/118 (12%)
Query: 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLS--KTKTIPKNLNPVWNQKLLFDFD--- 57
L + + +L D G + PF ++ FLN+ S KTK + K LNPVWN+ +F
Sbjct: 1042 LTIMLRSGENLPSSDENGYSDPFVKL-FLNEKSVYKTKVVKKTLNPVWNE----EFTIEV 1096
Query: 58 QTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLS 115
+ + L I V+ + + LG I S L G PL+ K F+
Sbjct: 1097 LNRVKDVLTINVNDWDSGEKN----DLLGTAEIDLSKLEPGGTTNSN-IPLDGKTFIV 1149
|
Length = 1227 |
| >gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 39/134 (29%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPY----------------VEVKMGNYKG----------- 319
L V V++AK L + G DPY + + + K
Sbjct: 30 LKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKS 89
Query: 320 --RTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTR 377
T+ + +NP WN+ F F E + + L + + D + DD+LG V L ++P
Sbjct: 90 IKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLP-- 143
Query: 378 VPPDSPLAPQWYRL 391
S W++L
Sbjct: 144 ----SCGLDSWFKL 153
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 4e-04
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 291 VVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQ 334
V++AKD GS D Y K G RT+ E NP WN+
Sbjct: 14 VLRAKDGR-----GSTDAYCVAKYGPKWVRTRTVEDSSNPRWNE 52
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 19/122 (15%)
Query: 284 MSY------LYVRVVKAKDLPPSSIT-GSCDPYVEV-----KMGNYKGRTKHFEKRMNPE 331
+SY L V + + ++L + +PYV+V K K +T + NP
Sbjct: 7 LSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPV 66
Query: 332 WNQVFAF--SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWY 389
+N+ + SK ++++ L++ + + GR+ +LG V L+ DS +WY
Sbjct: 67 FNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDL----DSQ-QSEWY 121
Query: 390 RL 391
L
Sbjct: 122 PL 123
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 5e-04
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 5 VEVVDAYDLMPKDGEGSASPFAEVDFLNQ---LSKTKTIPKNLNPVWNQKLLFDFDQTKS 61
+ +V A +L G + P+ + N ++KT+TI LNP W++ F+ + +
Sbjct: 5 IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDE--EFEL-EVPA 61
Query: 62 HNHLRIEVSIYHH 74
L I +++
Sbjct: 62 GEPLWISATVWDR 74
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 5e-04
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 8/128 (6%)
Query: 449 YLRVNVIEAQDIVPNDRNRLPEGFVKVQV-GNQVLKTKICPTPTTNPLWNEDLVFVAAEP 507
YL + + +++ +D N + FVK+ + V KTK+ T NP+WNE+
Sbjct: 1041 YLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKK-TLNPVWNEEFTIEVLNR 1099
Query: 508 FEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRR 567
++ L + V D K+++LG + L E N+ G I D
Sbjct: 1100 VKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTN------SNIPLDGKTFIVLDGT 1153
Query: 568 KELKFSSR 575
F+ R
Sbjct: 1154 LHPGFNFR 1161
|
Length = 1227 |
| >gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 274 FTSTYDLVEQMSYLYVRVVKAKDLPPSSI-TGSCDPYVEVKM---GNYKGRTKHFEKRMN 329
F+ Y+ + L V +++ +DLP +G+ DPYV++++ +K +T+ K N
Sbjct: 7 FSLRYNS--EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRN 64
Query: 330 PEWNQVFAF---SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPT 376
P +++ F F ++Q L + + RDD +G V L
Sbjct: 65 PVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADL 114
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 6e-04
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLF 54
L V VV +L +D S+ P+ + NQ KT+ I KNLNPVWN++L
Sbjct: 3 LLKVRVVRGTNLAVRD-FTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTL 54
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 6e-04
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 4 VVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHN 63
V V+ A L+ K G+ + + + T K +PVW ++ F+ S N
Sbjct: 2 QVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGN 61
Query: 64 HLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVR-KGEEVYQRFPLEKK 111
R + + R + FLG+V IP ++L KG + F LE K
Sbjct: 62 GNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESK 110
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 6e-04
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 3 LVVEVVDAYDLMPKD-GEGSASPFAEVDF---LNQLSKTKTIPKNLNPVWNQK--LLFDF 56
LVV + A DL D G GS+ P+ F L T+ I K+LNPVW + +L
Sbjct: 3 LVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTP 62
Query: 57 DQTKSHNHLRIEV 69
D+ K+ L +
Sbjct: 63 DEVKAGERLSCRL 75
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111 |
| >gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 16/117 (13%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLS-----KTKTIPKNLNPVWNQKLLFDF 56
L V V+ A +L DG P+ + L KTK + K NP +N+ L++D
Sbjct: 14 TLFVMVMHAKNLPLLDGS-DPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDG 72
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWF 113
+ ++VS++ H+ + FLG V IP L E KW+
Sbjct: 73 LPVEDLQQRVLQVSVWSHDS--LVENEFLGGVCIPLKKLDLSQETE--------KWY 119
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 7e-04
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 13/78 (16%)
Query: 5 VEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTK------TIPKNLNPVWNQKLLFDFDQ 58
V VV A +L PKD G + P+ ++ +L K K IP LNPV+ + +F+ +
Sbjct: 4 VYVVRARNLQPKDPNGKSDPYLKI----KLGKKKINDRDNYIPNTLNPVFGK--MFELEA 57
Query: 59 TKSHNHLRIEVSIYHHER 76
T N + +++S+ ++
Sbjct: 58 TLPGNSI-LKISVMDYDL 74
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 7e-04
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKV--QVGNQVLKTKICPTP--TTNPLWNEDLVF-VA 504
+ VN+I+A+++ D N + +VKV ++ ++ K T NP++NE +F +
Sbjct: 17 ITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIP 76
Query: 505 AEPFEE-QLFLTVEDRVHASKDEVLGKISLP 534
E E L +TV D+ S+++++GKI L
Sbjct: 77 LERLRETTLIITVMDKDRLSRNDLIGKIYLG 107
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 7e-04
Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 15/134 (11%)
Query: 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWV-RTRTILDTFNPKWNEQYTWEVYD 672
L++ I A+ L P D YC Q+ V RT+T+ + P + E + +E+
Sbjct: 2 LKIKIGEAKNLPPRS--GPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPR 59
Query: 673 PCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPH 732
++ ++D L RDS IGKV I+ L + +PL +
Sbjct: 60 TFRHLSFYIYDRDVLR-----------RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDAD 108
Query: 733 GVKKMGELQLAIRF 746
+ G++ L +R
Sbjct: 109 S-EVQGKVHLELRL 121
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 9e-04
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 21/106 (19%)
Query: 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTIL--DTFNPKWNEQYTWE 669
G LEV ++ A+GL + D G D Y I + + R + D NP+WNE++ +
Sbjct: 1 GTLEVLLISAKGL---QDTDFLGKIDPYVIIQCRTQ-ERKSKVAKGDGRNPEWNEKFKFT 56
Query: 670 VYDPC----TVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRL 711
V P T + L + D K N S D IG+ I L
Sbjct: 57 VEYPGWGGDTKLILRIMD--------KDNFSD---DDFIGEATIHL 91
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.001
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 9/63 (14%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFL-------NQLSKTKTIPKNLNPVWNQKLLF 54
L VE+++A +L+P D GS+ PF +V+ L KT+ K L P++++ F
Sbjct: 17 SLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDES--F 74
Query: 55 DFD 57
+F+
Sbjct: 75 EFN 77
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.001
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 12/107 (11%)
Query: 440 KVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQV-------GNQVLKTKICPTPTT 492
K Y LRV ++ A++++P D N + FVKV++ KT++ T
Sbjct: 8 KAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQV-KKKTL 66
Query: 493 NPLWNEDLVF-VAAEPFEEQ---LFLTVEDRVHASKDEVLGKISLPL 535
PL++E F V E + L TV+D ++ G+ LPL
Sbjct: 67 FPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPL 113
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 26/116 (22%)
Query: 614 LEVGILGAQGLLPMKMKDGRGSTDAYCI------AKYGQKWVRTRTILDTFNPKWNEQYT 667
L I+ A+GL M D G +D Y A +RT+T+ T NP++NE T
Sbjct: 17 LHCTIIRAKGLKAM---DANGLSDPYVKLNLLPGASK-ATKLRTKTVHKTRNPEFNETLT 72
Query: 668 WEVYDPCTV----ITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRI 719
+ + + L V D G + +G+ RI L L+ ++
Sbjct: 73 YYGITEEDIQRKTLRLLVLDEDRFG------------NDFLGETRIPLKKLKPNQT 116
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 23/100 (23%), Positives = 36/100 (36%), Gaps = 3/100 (3%)
Query: 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIP-KNLNPVWNQKLLFDFDQTKS 61
L V ++ A L D G P+ + Q K+K NP WN+K F +
Sbjct: 3 LEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGW 62
Query: 62 HNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEE 101
++ + I + F+G I L +G E
Sbjct: 63 GGDTKLILRIMDKDN--FSDDDFIGEATIHLKGLFEEGVE 100
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.001
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 287 LYVRVVKAKDLPPSSITGSC-DPYVEVKMGNYK-GRTKHFEKRMNPEWNQVFAFSKERIQ 344
L +++ +AK+LPP S D Y V + + RTK EK + P + + F F R
Sbjct: 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPR-T 60
Query: 345 SSMLEVFLKDKEMVGRDDYLGRVA 368
L ++ D++++ RD +G+VA
Sbjct: 61 FRHLSFYIYDRDVLRRDSVIGKVA 84
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.001
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 289 VRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAF----SKERIQ 344
VRV++A+ L G+ DP V+V++G K T + P +N+ F F S + +
Sbjct: 8 VRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELF 63
Query: 345 SSMLEVFLKDKEMVGRDDYLGRVAFDL 371
++++ + D + D +G D+
Sbjct: 64 DKIIKISVYDSRSLRSDTLIGSFKLDV 90
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.001
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Query: 287 LYVRVVKAKDLPP----SSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKER 342
+++ + DLPP + DP+V + G RT +NP +N+ AF
Sbjct: 3 VFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYP 62
Query: 343 IQSSMLEVF-LKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSP 383
+ + F + DK+ +DY+ + + E+ P P
Sbjct: 63 HEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAAPQPDP 104
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108 |
| >gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.001
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 445 PKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQV--GNQVLKTK--ICPTPTTNPLWNEDL 500
P L V++I A+ ++ D ++ + FVK+Q+ G +++KTK C T +P +NE
Sbjct: 11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESF 70
Query: 501 VF-VAAEPFEE-QLFLTVEDRVHASKDEVLGKI 531
F V E E L TV S ++ +G+I
Sbjct: 71 SFKVPQEELENVSLVFTVYGHNVKSSNDFIGRI 103
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.002
Identities = 41/147 (27%), Positives = 59/147 (40%), Gaps = 28/147 (19%)
Query: 613 ILEVGILGAQGLLPMKMKDGRGSTDAYC-IAKYGQKW------VRTRTILDTFNPKWNEQ 665
IL V +L L K KD G++D Y I+ Y V+T+TI T NPKWNE+
Sbjct: 1 ILRVKVLAGIDL--AK-KDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEE 57
Query: 666 YTWEVYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTL------EAHRI 719
+ + V + VFD L RD +G+V + L+ L R
Sbjct: 58 FFFRVNPREHRLLFEVFDENRLT-----------RDDFLGQVEVPLNNLPTETPGNERRY 106
Query: 720 YTHSYPLLVLHPHGVKKMGELQLAIRF 746
Y L + G L+L + +
Sbjct: 107 TFKDYLLRPRSSKS-RVKGHLRLYMAY 132
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 451 RVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTK-ICPTPTTNPLWNEDLVFVAAEPFE 509
RV V+ A+++ P D N + ++K+++G + + + T NP++ + A P
Sbjct: 3 RVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGN 62
Query: 510 EQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHR 545
L ++V D D+++G+ + L E R +
Sbjct: 63 SILKISVMDYDLLGSDDLIGETVIDL---EDRFFSK 95
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.002
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 17/117 (14%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVF------- 502
+ + V+ AQ ++ D+ + +V VQVG +TK P NP+WNE F
Sbjct: 3 ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQ-NLNPVWNEKFHFECHNSSD 61
Query: 503 ---VAAEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEK 556
V ++ + ++ + D+ LG+ + + +D W+NLEK
Sbjct: 62 RIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSGEMD------VWYNLEK 112
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 611 VGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEV 670
+G L V I+ + L P G +D YC G + +T+ + DT NPKWN + V
Sbjct: 14 IGRLMVVIVEGRDLKPCNSN---GKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFV 70
Query: 671 YD-PCTVITLGVFD 683
D V+ + VFD
Sbjct: 71 KDLEQDVLCITVFD 84
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 12 DLMPKDGEGSASPFAEVDFLN-QLSKTKTIPKNLNPVWNQK 51
+L +D G++ P+ + + + K+KTI KNLNPVW++K
Sbjct: 11 NLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEK 51
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 32/138 (23%), Positives = 50/138 (36%), Gaps = 37/138 (26%)
Query: 445 PKLWYLRVNVIEAQDIVPNDRN------------------------RLPEGFVKVQVGNQ 480
P ++ L+V VIEA+ ++ D N + K + +
Sbjct: 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDT 84
Query: 481 VLKTKICPTP----TTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASKDEVLGKISLPLH 536
V I T T NP+WNE F + +QL L + D D+ LG +++PL
Sbjct: 85 VPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWD----HDDDFLGCVNIPL- 139
Query: 537 IFEKRLDHRPVHSRWFNL 554
+ WF L
Sbjct: 140 ----KDLPSCGLDSWFKL 153
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153 |
| >gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 32/94 (34%)
Query: 608 KPPVGILEVGILGAQGLLPMKMKDGRGSTDAYCI----------------AKYGQKWV-- 649
+PP+ +L+V ++ A+GLL KD G +D YC+ + +
Sbjct: 24 EPPIFVLKVTVIEAKGLLA---KDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAV 80
Query: 650 -----------RTRTILDTFNPKWNEQYTWEVYD 672
T T NP WNE + +EV D
Sbjct: 81 LKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVED 114
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.002
Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 14/119 (11%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTP----TTNPLWNEDLVFVAA 505
L V +I ++ D N + FVK+ + K T T NP +NE+ +
Sbjct: 15 LIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIK 74
Query: 506 EPFEEQLFL--TVEDRVHASKDEVLGKISLPLHIFEKRLDH-----RP---VHSRWFNL 554
+ L TV D+ ++ +G + L ++ +RL H + W L
Sbjct: 75 HSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINAKGERLRHWLDCLKNPDKKIEAWHTL 133
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.002
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 468 LPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASKDEV 527
L + ++ + +++ T T NP WN F+ + + ++ + V+D D V
Sbjct: 12 LLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDD-RDRHDPV 70
Query: 528 LGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAI 562
LG +S+ L +D V +WF L G G I
Sbjct: 71 LGSVSISL---NDLIDATSVGQQWFPLSGNGQGRI 102
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 612 GILEVGILGAQGLLPMKMKD-GRGSTDAYC---IAKYGQKWVRTRTILDTFNPKWNEQYT 667
G+L V I A L D G GS+D Y AK+G+ TR I NP W E T
Sbjct: 1 GVLVVTIHRATDL---PKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEE--T 55
Query: 668 W 668
W
Sbjct: 56 W 56
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111 |
| >gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 24/119 (20%)
Query: 287 LYVRVVKAKDLPPSSITGSC-DPYVEVKMGNY---------KGRTKHFEKRMNPEWNQVF 336
L+V V+ AK+LP + GS DPYV+ Y K +TK K NP +N++
Sbjct: 15 LFVMVMHAKNLP--LLDGSDPDPYVKT----YLLPDPQKTTKRKTKVVRKTRNPTFNEML 68
Query: 337 A---FSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLE 392
E +Q +L+V + + + +++LG V L ++ + +WY L
Sbjct: 69 VYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETE-----KWYPLG 122
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.002
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 445 PKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVF-- 502
P+ + +RV VIEA+ +V + + P VKV+VG Q T + T P +NE F
Sbjct: 1 PQDFQVRVRVIEARQLVGGNID--P--VVKVEVGGQKKYTSV-KKGTNCPFYNEYFFFNF 55
Query: 503 --VAAEPFEEQLFLTVED 518
E F++ + ++V D
Sbjct: 56 HESPDELFDKIIKISVYD 73
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.003
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 16 KDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIY--- 72
KDG GS + + + +T+T+ + NP WN++ + + + V ++
Sbjct: 18 KDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCT----VLTVGVFDNS 73
Query: 73 -HHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQR-FPL 108
H + + +G+VRI S L + + VY +PL
Sbjct: 74 QSHWKEAVQPDVLIGKVRIRLSTL--EDDRVYAHSYPL 109
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.003
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 450 LRVNVIEAQDIVPNDR-NRLPEGFVKVQVGNQ--VLKTKICPTPTTNPLWNEDLVFVAAE 506
L V + A+ + +D + +V + N+ + +TK+ T+NP+WNE ++
Sbjct: 4 LAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKD-TSNPVWNETK-YILVN 61
Query: 507 PFEEQLFLTVEDRVHASKDEVLGKISLPL 535
E L LTV D KD+++G L
Sbjct: 62 SLTEPLNLTVYDFNDKRKDKLIGTAEFDL 90
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.003
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFE 509
L V +I A+ + D + +V +Q Q K+K+ NP WNE F P
Sbjct: 3 LEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGW 62
Query: 510 EQLF---LTVEDRVHASKDEVLGKISLPL 535
L + D+ + S D+ +G+ ++ L
Sbjct: 63 GGDTKLILRIMDKDNFSDDDFIGEATIHL 91
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.004
Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 25/124 (20%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVG----NQVLKTKICPTPTTNPLWNEDLVFVAA 505
L V V+E +D+ N + F +V + +TK+ T NP ++E F
Sbjct: 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKK-TNNPRFDEAFYFELT 58
Query: 506 EPFEEQLFLTVEDRVHASKDEV---------------LGKISLPLHIFEKRLDHRPVHSR 550
F + + K E+ LG++ +PL + L H
Sbjct: 59 IGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPL----QGLQQAGSHQA 114
Query: 551 WFNL 554
W+ L
Sbjct: 115 WYFL 118
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.004
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 24/109 (22%)
Query: 10 AYDLMPKDGEGSASPFAEV------DFLNQLSKTKTIPKNLNPVWN------QKLLF-DF 56
L KD G + PF E+ + +T+ I LNPVW QKL D+
Sbjct: 9 GKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKPFTIPLQKLCNGDY 68
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGRH-FLGRVRIPCSNLVRKGEEVYQ 104
D+ ++IEV Y ++ G+H +G L++ ++
Sbjct: 69 DR-----PIKIEV--YDYDSS---GKHDLIGEFETTLDELLKSSPLEFE 107
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110 |
| >gnl|CDD|175983 cd04016, C2_Tollip, C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.004
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 307 DPYVEVKMGN--YKGRTKHFEKRMNPEWNQVF-AFSKERIQSSMLEVFLKDKEMVGRDDY 363
DPY +++G+ Y+ T + + NP WN+ E + S +E+F D+ D+
Sbjct: 23 DPYCRIRVGHAVYETPTAYNGAK-NPRWNKTIQCTLPEGVDSIYIEIF--DERAFTMDE- 78
Query: 364 LGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGK 399
R+A+ +P V L WY L ++GE K
Sbjct: 79 --RIAWTHITIPESVFNGETLD-DWYSLSGKQGEDK 111
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 121 |
| >gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 38.3 bits (89), Expect = 0.004
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 20/122 (16%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKM---GNYKGRTKHFEKR--MNPEWNQ--VFAFS 339
L + ++KA++L ITG DPYV+V + G + K K+ +NP +N+ VF
Sbjct: 16 LTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVP 75
Query: 340 KERIQSSMLEVFLKDKEMVGRDDYLG--RVAFDL--------NEVPTRVPPDSPLAPQWY 389
E + + L + + D + VG ++ +G RV + NE+ P P+A QW+
Sbjct: 76 PENVDNVSLIIAVVDYDRVGHNELIGVCRVGPNADGQGREHWNEMLAN--PRKPIA-QWH 132
Query: 390 RL 391
+L
Sbjct: 133 QL 134
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1026 | |||
| PF08372 | 156 | PRT_C: Plant phosphoribosyltransferase C-terminal; | 100.0 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 100.0 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.95 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.95 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.95 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.94 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.88 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.87 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.86 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.86 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.86 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.84 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.82 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.82 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.81 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.8 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.8 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.8 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.79 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.79 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.79 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.78 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.78 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.77 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.77 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.77 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.77 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.76 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.76 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.76 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.76 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.76 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.75 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.75 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.75 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.75 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.75 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.75 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.75 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.75 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.74 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.74 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.74 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.74 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.74 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.74 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.74 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.74 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.74 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.73 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.73 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.73 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.73 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.72 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.72 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.72 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.72 | |
| PF04842 | 683 | DUF639: Plant protein of unknown function (DUF639) | 99.72 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.72 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.72 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.72 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.72 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.72 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.71 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.71 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.71 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.71 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.71 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.71 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.7 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.7 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.7 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.7 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.7 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.7 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.7 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.69 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.69 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.69 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.69 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.68 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.68 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.68 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.68 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.68 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.68 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.68 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.67 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.67 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.67 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.67 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.67 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.67 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.67 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.67 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.67 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.67 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.67 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.66 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.66 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.66 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.66 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.66 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.66 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.66 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.66 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.66 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.66 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.65 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.65 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.65 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.65 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.65 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.64 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.64 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.64 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.64 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.63 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.63 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.63 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.63 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.63 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.63 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.62 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.62 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.62 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.62 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.62 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.62 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.61 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.61 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.61 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.6 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.6 | |
| PLN03008 | 868 | Phospholipase D delta | 99.6 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.6 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.6 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.6 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.59 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.59 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.59 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.58 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.58 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.58 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.58 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.58 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.58 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.57 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.57 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.57 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.57 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.57 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.57 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.57 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.57 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.57 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.56 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.56 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.56 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.56 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.56 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.56 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.56 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.55 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.55 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.55 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.55 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.55 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.54 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.54 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.54 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.54 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.53 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.53 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.53 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.52 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.52 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.52 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.52 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.51 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.51 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.51 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.51 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.51 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.51 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.5 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.5 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.5 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.5 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.49 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.49 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.48 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.47 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.46 | |
| PLN03008 | 868 | Phospholipase D delta | 99.45 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.45 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.44 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.42 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.36 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.34 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.32 | |
| PF06398 | 359 | Pex24p: Integral peroxisomal membrane peroxin; Int | 99.32 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 99.3 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.3 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.28 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.25 | |
| PLN02270 | 808 | phospholipase D alpha | 99.23 | |
| PF11696 | 642 | DUF3292: Protein of unknown function (DUF3292); In | 99.13 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.12 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.12 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.07 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.07 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.07 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.05 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.04 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 98.99 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.94 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.94 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.93 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.93 | |
| PLN02270 | 808 | phospholipase D alpha | 98.9 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 98.87 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.85 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.82 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.79 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.79 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.79 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.78 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.76 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.76 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.74 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.68 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.67 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.67 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.59 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 98.58 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.54 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.41 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.26 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 98.25 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.18 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 98.02 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 97.93 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 97.86 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.55 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 97.46 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.44 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.4 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 97.31 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.28 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 97.28 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 96.62 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 95.73 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 95.72 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 95.65 | |
| PF08372 | 156 | PRT_C: Plant phosphoribosyltransferase C-terminal; | 95.54 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 95.5 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 95.4 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 95.26 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 94.93 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 94.9 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 94.7 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 94.51 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 94.49 | |
| PF02453 | 169 | Reticulon: Reticulon; InterPro: IPR003388 Eukaryot | 94.42 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 93.79 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 93.72 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 93.51 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 93.48 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 93.24 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 92.43 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 92.42 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 92.41 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 91.76 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 91.76 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 88.97 | |
| PF08151 | 72 | FerI: FerI (NUC094) domain; InterPro: IPR012968 Th | 88.4 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 88.31 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 87.85 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 87.25 | |
| PF11696 | 642 | DUF3292: Protein of unknown function (DUF3292); In | 86.94 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 86.24 | |
| PF06398 | 359 | Pex24p: Integral peroxisomal membrane peroxin; Int | 85.14 | |
| PF15625 | 168 | CC2D2AN-C2: CC2D2A N-terminal C2 domain | 83.8 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 83.2 | |
| PF15625 | 168 | CC2D2AN-C2: CC2D2A N-terminal C2 domain | 82.62 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 80.87 | |
| KOG1329 | 887 | consensus Phospholipase D1 [Lipid transport and me | 80.82 |
| >PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-43 Score=329.03 Aligned_cols=156 Identities=74% Similarity=1.314 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCCccccccCCCCCCCcccCCCCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHh
Q 001696 871 LPTVFLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSKTHDIVRIRYDRLRSVAGRIQTVVGDIAT 950 (1026)
Q Consensus 871 lp~~~l~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~~~~r~~~l~~~~~~vQ~~l~~~a~ 950 (1026)
+|.+|++++++++|||.++|++|+|+|.+++.+|..++||+|||+|++|++++++.++|||++||+++++|||.||++|+
T Consensus 1 lp~~~l~~~~~~~w~yr~rpr~p~~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At 80 (156)
T PF08372_consen 1 LPTVFLYLFLIGLWNYRFRPRHPPHMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVAT 80 (156)
T ss_pred CchHHHHHHHHHHhccccCCCCCCCCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHhhhccccCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhcCCCCCCCCCCchhhhhhcCCCCcCCCC
Q 001696 951 QGERFQSLLSWRDPRATALFILFSLCAAMVLYTTPFKVVALLAGLYYLRHPRFRSKLPSVPSNFFKRMPARTDSLL 1026 (1026)
Q Consensus 951 ~le~~~~l~~w~~p~~t~~~~~~l~~~~i~l~~iP~r~i~l~~g~~~~r~P~~~~~~p~~~~~~~~r~P~~~d~~~ 1026 (1026)
++||++|+|+|+||.+|.+++++|+++++++|++|+|+++++||+|++|||+||.++|+.++|||+||||++|+||
T Consensus 81 ~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~P~~~~nff~RlPs~~d~~l 156 (156)
T PF08372_consen 81 QGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPLPSPPLNFFRRLPSRSDSML 156 (156)
T ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCCCcHHHHHHHHCCCchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997
|
It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO). |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=343.55 Aligned_cols=553 Identities=19% Similarity=0.245 Sum_probs=389.5
Q ss_pred ceEEEEeecCCCccCC--CCCCCCCEEEEEeCC-ceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCC
Q 001696 2 KLVVEVVDAYDLMPKD--GEGSASPFAEVDFLN-QLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRP 78 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~--~~g~~dpyv~v~~~~-~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~ 78 (1026)
+|.|+|.+|++|...+ .+++.|||+++.+.+ ...+|+++++++||+|||+|+..+.... +.|.+.|||+++.
T Consensus 437 Vv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~----d~L~LslyD~n~~- 511 (1227)
T COG5038 437 VVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFT----DPLNLSLYDFNSF- 511 (1227)
T ss_pred EEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccC----CceeEEEEecccc-
Confidence 5789999999998887 579999999999844 5679999999999999999999998776 6999999995553
Q ss_pred CCCCccceeEEecCccccccCCceeEEeeccccccccccccccceeEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 001696 79 IPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYISPQSETTQPPTSSLPKPKSPKNTTNLDSKTF 158 (1026)
Q Consensus 79 ~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (1026)
..|+.+|.+.++|..|..++.....-|.+.. ..+..|+|...+.|++......
T Consensus 512 -~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~---~~k~vGrL~yDl~ffp~~e~k~----------------------- 564 (1227)
T COG5038 512 -KSDKVVGSTQLDLALLHQNPVKKNELYEFLR---NTKNVGRLTYDLRFFPVIEDKK----------------------- 564 (1227)
T ss_pred -CCcceeeeEEechHHhhhccccccceeeeec---cCccceEEEEeeeeecccCCcc-----------------------
Confidence 4899999999999999887754444344432 3456899999999987655422
Q ss_pred CCCcchhhccccCCCCCCCccccccccccccccCCcCCCCcchhhhcccccccCCCCCCCCCCCCCCccccccCcCCCCC
Q 001696 159 TALPKVEELAAVDAPKSLPEEEISRISLKEDIKEPAKVTVEPIQEFLKQQVVLQPGQSVEKQPQGVPFTMHSMNLQQGRP 238 (1026)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1026)
.. +.. .
T Consensus 565 ~~----------------------------~~s------------------------------~---------------- 570 (1227)
T COG5038 565 EL----------------------------KGS------------------------------V---------------- 570 (1227)
T ss_pred cc----------------------------ccc------------------------------c----------------
Confidence 00 000 0
Q ss_pred CCcccCcccCCCCCCCCCCCCCCCCCCCcccccceeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-
Q 001696 239 GDQEEYNLKDTNPQLGERWPNGGGYGGRGWMSGERFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNY- 317 (1026)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~- 317 (1026)
+. ..+ ...|.+.+++.++++|..... ....-++++++..+
T Consensus 571 ---------e~---------------------------~ed--~n~GI~k~tl~~~~~l~~~~~-~~~~~~a~l~~~~ke 611 (1227)
T COG5038 571 ---------EP---------------------------LED--SNTGILKVTLREVKALDELSS-KKDNKSAELYTNAKE 611 (1227)
T ss_pred ---------CC---------------------------ccc--CCcceeEEEeeccccccCccc-cccceeEEEEecceE
Confidence 00 000 023789999999999965421 12233488998886
Q ss_pred eeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCC
Q 001696 318 KGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGE 397 (1026)
Q Consensus 318 ~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 397 (1026)
.+.|+.++.+.+|.||+.+...+.+-....+.+.++|.. ..+.||+...+|.++...... ...||++..+
T Consensus 612 V~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~---~g~~i~~~~~~l~~li~~t~d----t~~~f~~~~~--- 681 (1227)
T COG5038 612 VYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQ---SGKVIATEGSTLPDLIDRTLD----TFLVFPLRNP--- 681 (1227)
T ss_pred EeccceeeeccCCceeeecceEeccCcceeEEEEecccc---cCceeccccccchHhhhcccc----ceEEEEcCCC---
Confidence 567789999999999999999998887889999999876 356899999999888755432 2489998854
Q ss_pred CcccceEEEEEEecccCchhhhhcccccCccccCCCccccccccccCCceEEEEEEEEEeEecCCCCCCCCCCcEEEEEE
Q 001696 398 GKVRGQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQV 477 (1026)
Q Consensus 398 ~~~~G~i~l~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~r~~~~~~p~~~~l~V~I~~a~~L~~~d~~~~~dpyV~v~l 477 (1026)
.|+|.++....+..... ...++.+.....|.++|.|..|.+|......+.+|||++|.+
T Consensus 682 ---kg~I~~t~~W~Pi~~~~------------------~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~ 740 (1227)
T COG5038 682 ---KGRIFITNYWKPIYNAG------------------GSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLV 740 (1227)
T ss_pred ---cceEEEEeccceeeccc------------------cccceeeecCccceEEEEeehhhcccccccCcccccceEEEe
Confidence 38899887544322100 011233345667889999999999998778899999999999
Q ss_pred CC-eEEEeeeecCCCCCCcccceeEEEeeCCCcCeEEEEEEEccCCCCCceeEEEEEeCcccccccCCCC----------
Q 001696 478 GN-QVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRP---------- 546 (1026)
Q Consensus 478 g~-~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~---------- 546 (1026)
++ .++||-.. ..+.||.||+..+.++..+.. .+.+..+|++..+.|..+|++.|+++++..+.++..
T Consensus 741 n~~~k~rti~~-~~~~npiw~~i~Yv~v~sk~~-r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~ 818 (1227)
T COG5038 741 NNLVKYRTIYG-SSTLNPIWNEILYVPVTSKNQ-RLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEE 818 (1227)
T ss_pred cceeEEEEecc-cCccccceeeeEEEEecCCcc-EEeeeeecchhccccceeceeeeeeeeeeecCCCcceEEeecCccc
Confidence 76 57888888 699999999999999988644 699999999999999999999999999887432210
Q ss_pred ----------------ccceeEEcccCCCC------------------------c-----hhhh-----------hhc--
Q 001696 547 ----------------VHSRWFNLEKFGFG------------------------A-----IEAD-----------RRK-- 568 (1026)
Q Consensus 547 ----------------~~~~w~~L~~~~~~------------------------~-----~~~~-----------~~~-- 568 (1026)
...+.|+....... . .+.. ...
T Consensus 819 t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~ 898 (1227)
T COG5038 819 TGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMY 898 (1227)
T ss_pred ccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhcceeeccccchh
Confidence 00111111000000 0 0000 000
Q ss_pred ----------c-ccccceEE--------------------------------------------------------EEEE
Q 001696 569 ----------E-LKFSSRVH--------------------------------------------------------LRVC 581 (1026)
Q Consensus 569 ----------~-~~~~g~l~--------------------------------------------------------l~~~ 581 (1026)
. .-..|-+- +++.
T Consensus 899 ~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~ 978 (1227)
T COG5038 899 SLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVT 978 (1227)
T ss_pred hcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccceEEEEec
Confidence 0 00000000 0000
Q ss_pred e----cC----CccccC---Ccccc-------cC---------CccccccccC----CCCceEEEEEEEEecCCCCCccC
Q 001696 582 L----EG----GYHVLD---ESTMY-------IS---------DQRPTAKQLW----KPPVGILEVGILGAQGLLPMKMK 630 (1026)
Q Consensus 582 ~----~~----~~~~~~---~~~~~-------~~---------d~~~~~~~~~----~~~~g~L~v~v~~a~~L~~~~~~ 630 (1026)
= .+ ...... ....+ .. +..|....+- -.+.|.|.|.+..|.||+..
T Consensus 979 K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~--- 1055 (1227)
T COG5038 979 KNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPSS--- 1055 (1227)
T ss_pred cCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccCCCccc---
Confidence 0 00 000000 00000 00 0112211110 13469999999999999987
Q ss_pred CCCCCcCcEEEEEECCE-EEEeeeecCCCCceeecEEEEEeeC-CCCEEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEE
Q 001696 631 DGRGSTDAYCIAKYGQK-WVRTRTILDTFNPKWNEQYTWEVYD-PCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVR 708 (1026)
Q Consensus 631 ~~~~~~dpyv~v~~g~~-~~~T~~~~~t~~P~wne~~~~~v~~-~~~~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~ 708 (1026)
|.+|.+||||++.++++ .++|+++++++||.|||.+..+|.. ..+.++|.|+|||.- ++++.||++.
T Consensus 1056 d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~-----------~knd~lg~~~ 1124 (1227)
T COG5038 1056 DENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSG-----------EKNDLLGTAE 1124 (1227)
T ss_pred ccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccC-----------CCcccccccc
Confidence 77899999999999877 7999999999999999999999995 578899999999973 4899999999
Q ss_pred EEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEEee
Q 001696 709 IRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTI 748 (1026)
Q Consensus 709 i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 748 (1026)
|+|+.|+.+..+....+|.++. .+ ...|.++....|.+
T Consensus 1125 idL~~l~~~~~~n~~i~ldgk~-~~-~~~g~~~~~~~~r~ 1162 (1227)
T COG5038 1125 IDLSKLEPGGTTNSNIPLDGKT-FI-VLDGTLHPGFNFRS 1162 (1227)
T ss_pred ccHhhcCcCCccceeeeccCcc-eE-ecccEeecceecch
Confidence 9999999998888888886433 11 22466666555543
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-27 Score=265.41 Aligned_cols=227 Identities=30% Similarity=0.466 Sum_probs=195.4
Q ss_pred ccc-eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeeecCCCCCeEeEEEEEEec--CC
Q 001696 270 SGE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN---YKGRTKHFEKRMNPEWNQVFAFSKE--RI 343 (1026)
Q Consensus 270 ~g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~kT~~~~~t~nP~wne~f~f~v~--~~ 343 (1026)
.|. +|++.|+. +...|.|+|++|++|+.++..|.+||||++++.. .+.+|++.++|+||.|||+|.|.+. +.
T Consensus 153 ~G~l~fsl~Yd~--~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l 230 (421)
T KOG1028|consen 153 VGNLQFSLQYDF--ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEEL 230 (421)
T ss_pred eeeEEEEEEecc--cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHh
Confidence 345 89999998 6799999999999999999778899999999986 4689999999999999999999963 45
Q ss_pred CCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCC-cccceEEEEEEecccCchhhhhcc
Q 001696 344 QSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEG-KVRGQTMLAIWMGTQADEAFAEAW 422 (1026)
Q Consensus 344 ~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~~~~~~~~d~~~~~~~ 422 (1026)
....|.+.|||+|.++++++||++.++|..+....... .|.+|....... ...|+|.++++|.+.+
T Consensus 231 ~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~-----~w~~l~~~~~~~~~~~gel~~sL~Y~p~~-------- 297 (421)
T KOG1028|consen 231 SNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTL-----FWKDLQPSSTDSEELAGELLLSLCYLPTA-------- 297 (421)
T ss_pred ccCEEEEEEEecCCcccccEEEEEEecCccccccccce-----eeeccccccCCcccccceEEEEEEeecCC--------
Confidence 67899999999999999999999999999887765433 799998864332 2337999999986642
Q ss_pred cccCccccCCCccccccccccCCceEEEEEEEEEeEecCCCCCCCCCCcEEEEEE--CC---eEEEeeeecCCCCCCccc
Q 001696 423 HSDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQV--GN---QVLKTKICPTPTTNPLWN 497 (1026)
Q Consensus 423 ~~d~~~~~~~~~~~~r~~~~~~p~~~~l~V~I~~a~~L~~~d~~~~~dpyV~v~l--g~---~~~kT~~~~~~t~nP~wn 497 (1026)
+.|+|.|++|++|..++.++.+||||++++ ++ .+.+|.++ +++.||+||
T Consensus 298 -------------------------g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~-~~~~npv~n 351 (421)
T KOG1028|consen 298 -------------------------GRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVK-KKTLNPVFN 351 (421)
T ss_pred -------------------------CeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecc-cCCCCCccc
Confidence 469999999999999999999999999999 32 35678888 799999999
Q ss_pred ceeEEEeeCC--CcCeEEEEEEEccCCCCCceeEEEEEeCcc
Q 001696 498 EDLVFVAAEP--FEEQLFLTVEDRVHASKDEVLGKISLPLHI 537 (1026)
Q Consensus 498 e~f~f~v~~~--~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~ 537 (1026)
|+|.|.+... ....|.|+|||++..+.+++||.|.+....
T Consensus 352 esf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 352 ETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred ccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 9999987643 456899999999999999999999998774
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-26 Score=265.92 Aligned_cols=396 Identities=20% Similarity=0.246 Sum_probs=301.3
Q ss_pred cceeEEEEEEEEeecCCCCC--CCCCCCcEEEEEECCe-eeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCC
Q 001696 282 EQMSYLYVRVVKAKDLPPSS--ITGSCDPYVEVKMGNY-KGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMV 358 (1026)
Q Consensus 282 ~~~~~L~V~v~~a~~L~~~d--~~g~~dpyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~ 358 (1026)
...|+|.|+|.+|++|...+ .++..|||+.+.+.+. ..||++++++.||+|||+|++.+... ++.|.++|||.+.+
T Consensus 433 ~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~ 511 (1227)
T COG5038 433 TAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSF 511 (1227)
T ss_pred CeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEeccc-CCceeEEEEecccc
Confidence 36799999999999999887 6789999999998764 67999999999999999999999766 57999999999999
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecccCchhhhhcccccCccccCCCccccc
Q 001696 359 GRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIR 438 (1026)
Q Consensus 359 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~r 438 (1026)
.+|+++|.+.++|..+.......+ .-+.+.. ..+..|+|...+.|.+........ ....+.
T Consensus 512 ~sd~vvG~~~l~L~~L~~~~~~~n----e~~e~~~---~~k~vGrL~yDl~ffp~~e~k~~~-------~~s~e~----- 572 (1227)
T COG5038 512 KSDKVVGSTQLDLALLHQNPVKKN----ELYEFLR---NTKNVGRLTYDLRFFPVIEDKKEL-------KGSVEP----- 572 (1227)
T ss_pred CCcceeeeEEechHHhhhcccccc----ceeeeec---cCccceEEEEeeeeecccCCcccc-------ccccCC-----
Confidence 999999999999999987765442 2333332 235689999999777654321110 000000
Q ss_pred cccccCCceEEEEEEEEEeEecCCCCCCCCCCcEEEEEECC-eEEEeeeecCCCCCCcccceeEEEeeCCCcCeEEEEEE
Q 001696 439 SKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVGN-QVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVE 517 (1026)
Q Consensus 439 ~~~~~~p~~~~l~V~I~~a~~L~~~d~~~~~dpyV~v~lg~-~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~ 517 (1026)
..+...|.+.+++.++++|..... ....-++++++.. +.+-|+.. +.+.+|.||+.+.-.+.+.....+.+.++
T Consensus 573 ---~ed~n~GI~k~tl~~~~~l~~~~~-~~~~~~a~l~~~~keV~st~~~-k~t~~~~wn~~~~~~v~~~~ns~~~~~~~ 647 (1227)
T COG5038 573 ---LEDSNTGILKVTLREVKALDELSS-KKDNKSAELYTNAKEVYSTGKL-KFTNHPSWNLQYNVLVTDRKNSSIKVVTF 647 (1227)
T ss_pred ---cccCCcceeEEEeeccccccCccc-cccceeEEEEecceEEecccee-eeccCCceeeecceEeccCcceeEEEEec
Confidence 012235789999999999975332 2223348888865 45666777 79999999999999999988889999999
Q ss_pred EccCCCCCceeEEEEEeCcccccccCCCCccceeEEcccCCCCchhhhhhccccccceEEEEEEecCCccccCCcccccC
Q 001696 518 DRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFSSRVHLRVCLEGGYHVLDESTMYIS 597 (1026)
Q Consensus 518 d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~ 597 (1026)
|.. ..+.||....+|.++... ......||++..+ .|+|.+..++.+-|......
T Consensus 648 d~~---~g~~i~~~~~~l~~li~~---t~dt~~~f~~~~~---------------kg~I~~t~~W~Pi~~~~~~~----- 701 (1227)
T COG5038 648 DVQ---SGKVIATEGSTLPDLIDR---TLDTFLVFPLRNP---------------KGRIFITNYWKPIYNAGGSS----- 701 (1227)
T ss_pred ccc---cCceeccccccchHhhhc---cccceEEEEcCCC---------------cceEEEEeccceeecccccc-----
Confidence 873 567899999999887754 3446789999865 48898888766544211101
Q ss_pred CccccccccCCCCceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-EEEEeeeecCCCCceeecEEEEEeeCCCCE
Q 001696 598 DQRPTAKQLWKPPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ-KWVRTRTILDTFNPKWNEQYTWEVYDPCTV 676 (1026)
Q Consensus 598 d~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~-~~~~T~~~~~t~~P~wne~~~~~v~~~~~~ 676 (1026)
+...+..++|.++|.|..|.+|... ...+++|||+++.+++ .++||-....++||.||+....+|..+.+.
T Consensus 702 -----s~~~~~~pIg~irv~v~~andl~n~---i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~~r 773 (1227)
T COG5038 702 -----SKTVYDTPIGAIRVSVRKANDLRNE---IPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQR 773 (1227)
T ss_pred -----ceeeecCccceEEEEeehhhccccc---ccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCCccE
Confidence 1112346789999999999999864 6788999999999975 469999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccC----CceE------eeeEeeeecCCCCCccCcEEEEEEEE
Q 001696 677 ITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEA----HRIY------THSYPLLVLHPHGVKKMGELQLAIRF 746 (1026)
Q Consensus 677 l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~----~~~~------~~~~~L~~~~~~g~~~~G~i~l~~~f 746 (1026)
|.++++|....+ .|..||.+.|+++++.. +..+ ...-+|. ..|.+..|+|++..+|
T Consensus 774 ~~l~~~~~~~sg-----------ddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~---~~~~~~~~tit~~~~f 839 (1227)
T COG5038 774 LTLECMDYEESG-----------DDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLS---LTGKKVKGTITYKCRF 839 (1227)
T ss_pred Eeeeeecchhcc-----------ccceeceeeeeeeeeeecCCCcceEEeecCcccccccc---cccCCcceeEEEEEEE
Confidence 999999999865 89999999999999865 2111 0111111 1233447999999998
Q ss_pred eecc
Q 001696 747 TIFS 750 (1026)
Q Consensus 747 ~~~~ 750 (1026)
-|..
T Consensus 840 ~p~~ 843 (1227)
T COG5038 840 YPAV 843 (1227)
T ss_pred Eeec
Confidence 7643
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-27 Score=270.03 Aligned_cols=614 Identities=18% Similarity=0.225 Sum_probs=360.1
Q ss_pred eEEEEeecCCCccCCCCCCCCCEEEEEeCCceeeeccCCCCCCcccceeEEEeccCC----C--CCccceEEEEEeeCCC
Q 001696 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQT----K--SHNHLRIEVSIYHHER 76 (1026)
Q Consensus 3 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~----~--~~~~~~L~~~V~d~d~ 76 (1026)
|++.|.+|+.|...+..+.+|||+.|.+-++.+.|-++.+|+||.|+++..|.-... . ..+-..+.|+|||.|+
T Consensus 208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr 287 (1105)
T KOG1326|consen 208 LRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDR 287 (1105)
T ss_pred hHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhh
Confidence 456788899999999999999999999999999999999999999999999972210 0 0011368999999666
Q ss_pred CCCCCCccceeEEecCccccccCCceeEEeeccccccccccccccceeEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 001696 77 RPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYISPQSETTQPPTSSLPKPKSPKNTTNLDSK 156 (1026)
Q Consensus 77 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1026)
. +.++|+|+......-... .....|+++...+ ...|++.+....+....+.. .+.+.
T Consensus 288 ~--g~~ef~gr~~~~p~V~~~--~p~lkw~p~~rg~---~l~gd~l~a~eliq~~~~i~-----~p~~~----------- 344 (1105)
T KOG1326|consen 288 S--GINEFKGRKKQRPYVMVQ--CPALKWVPTMRGA---FLDGDVLIAAELIQIGKPIP-----QPPPQ----------- 344 (1105)
T ss_pred h--chHHhhcccccceEEEec--CCccceEEeeccc---ccccchhHHHHHHhhcCCCC-----CCCcc-----------
Confidence 4 489999998766443222 2367788887643 34566665544332222100 00000
Q ss_pred ccCCCcchhhccccCCCCCCCccccccccccccccCCcCCCCcchhhhcccccccCCCCCCCCCCCCCCccccccCcCCC
Q 001696 157 TFTALPKVEELAAVDAPKSLPEEEISRISLKEDIKEPAKVTVEPIQEFLKQQVVLQPGQSVEKQPQGVPFTMHSMNLQQG 236 (1026)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (1026)
++. ..++..
T Consensus 345 ---------------------------------------------------------------~~~--~~~~vp------ 353 (1105)
T KOG1326|consen 345 ---------------------------------------------------------------REI--IFSLVP------ 353 (1105)
T ss_pred ---------------------------------------------------------------ccc--ceeccc------
Confidence 000 000000
Q ss_pred CCCCcccCcccCCCCCCCCCCCCCCCCCCCcccccceeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC
Q 001696 237 RPGDQEEYNLKDTNPQLGERWPNGGGYGGRGWMSGERFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN 316 (1026)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~ 316 (1026)
. +++ .+.+.+.++|-...-+|+..........|-+.+.+++
T Consensus 354 ------------------~----~iR-----------------p~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~ 394 (1105)
T KOG1326|consen 354 ------------------K----KIR-----------------PKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGG 394 (1105)
T ss_pred ------------------c----CCC-----------------cceeeeeeehhhhhhcccccccccccCCcceeEeeCC
Confidence 0 000 0013345555555556666656666788999999999
Q ss_pred eeeEeeeecC-CCCCeEeEEEEEEe-----cCCCCCeEEEEEEeCCCCCCCceeEEEEEEc-cccCCCCCCCCCCCC---
Q 001696 317 YKGRTKHFEK-RMNPEWNQVFAFSK-----ERIQSSMLEVFLKDKEMVGRDDYLGRVAFDL-NEVPTRVPPDSPLAP--- 386 (1026)
Q Consensus 317 ~~~kT~~~~~-t~nP~wne~f~f~v-----~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l-~~l~~~~~~~~~~~~--- 386 (1026)
+..++..+.+ ..||.++..|.+.. ....-..+.++|.|.+.++.-..+|+|.+.- .+..-.........+
T Consensus 395 e~v~s~~I~~~k~npnf~s~~~~~~v~lpd~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~ 474 (1105)
T KOG1326|consen 395 ERVSSFSIFNRKKNPNFPSRVLGRLVILPDEELYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFA 474 (1105)
T ss_pred ceEeeeeehhhhhCCCCceeEEEEEEeccchHhhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCC
Confidence 9888777765 67899987766542 2233578999999999999999999998853 222211110000000
Q ss_pred --------------------EEEE-----------------eecCCCCC------cccceEEEEEEecccCc-hhhh--h
Q 001696 387 --------------------QWYR-----------------LEDRRGEG------KVRGQTMLAIWMGTQAD-EAFA--E 420 (1026)
Q Consensus 387 --------------------~w~~-----------------L~~~~~~~------~~~G~i~l~~~~~~~~d-~~~~--~ 420 (1026)
.|++ +....... ..++...+.++....+. +.+. .
T Consensus 475 ~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~ 554 (1105)
T KOG1326|consen 475 SDPVSIMMGSTDNEIRHCNSSTLPASPHEDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQ 554 (1105)
T ss_pred CCchhhhcCCchhhhhhccccCCCCCccccccceehhhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhh
Confidence 0111 11100000 01111222222111110 0010 1
Q ss_pred cccccC----------c-ccc------------CCC------ccccc-cc-cccCCceEEEEEEEEEeEecCCCCCCCCC
Q 001696 421 AWHSDA----------S-SVY------------GEG------VFNIR-SK-VYVSPKLWYLRVNVIEAQDIVPNDRNRLP 469 (1026)
Q Consensus 421 ~~~~d~----------~-~~~------------~~~------~~~~r-~~-~~~~p~~~~l~V~I~~a~~L~~~d~~~~~ 469 (1026)
.|..+- . +.. +.+ ..... .. ....|....++|+|++|-+|.+.|.+|.+
T Consensus 555 D~~~~f~l~rG~~~~e~~e~~Ivg~fKgl~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~D~ng~a 634 (1105)
T KOG1326|consen 555 DWAVTFKLYRGKEGLECLEQQIVGEFKGLFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPSDGNGDA 634 (1105)
T ss_pred hccceeEeeeccccCCCcccchhhhhhcceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeeccccCCCCCc
Confidence 121100 0 000 000 00000 00 01136677899999999999999999999
Q ss_pred CcEEEEEECCeEE--EeeeecCCCCCCcccceeEEEeeCCCcCeEEEEEEEccCCCCCceeEEEEEeCcc-cccccCCCC
Q 001696 470 EGFVKVQVGNQVL--KTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASKDEVLGKISLPLHI-FEKRLDHRP 546 (1026)
Q Consensus 470 dpyV~v~lg~~~~--kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~-l~~~~~~~~ 546 (1026)
||||++.+|++.. +...+ .+|+||+|++.|++....+....+.++|||+|..+.|+.||+..|+|.. .....+.++
T Consensus 635 dpYv~l~lGk~~~~d~~~yi-p~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLEnR~~T~~~a~c 713 (1105)
T KOG1326|consen 635 DPYVKLLLGKKRTLDRAHYI-PNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLENRWLTRHRARC 713 (1105)
T ss_pred CceeeeeeccchhhhhhhcC-cCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhhhcccCcCCccc
Confidence 9999999999864 55566 6999999999999999999999999999999999999999999999986 333334455
Q ss_pred ccceeEEcccCCCCc--hhh--------hh-hccccc-cceEEEEEEecCCc----------------------------
Q 001696 547 VHSRWFNLEKFGFGA--IEA--------DR-RKELKF-SSRVHLRVCLEGGY---------------------------- 586 (1026)
Q Consensus 547 ~~~~w~~L~~~~~~~--~~~--------~~-~~~~~~-~g~l~l~~~~~~~~---------------------------- 586 (1026)
...+-|...+...-- +.- .. +..... .+.+ ..+.+.+..
T Consensus 714 glaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~-~~i~~~g~~~~~d~~~~k~~~~~~L~~~~~r~~~~i~ 792 (1105)
T KOG1326|consen 714 GLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEV-SAIKWKGESDIYDEKEAKTIEVPHLGNAWERLALWIL 792 (1105)
T ss_pred CccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCc-ceEEecChhhhhcccccCCCCCcccchHHHHHHHHhh
Confidence 555555555443100 000 00 000000 0000 011111100
Q ss_pred ---cccC---CcccccCCcccc----ccccC------------------CCCceEEEEEEEEecCCCCCccCCCCC--Cc
Q 001696 587 ---HVLD---ESTMYISDQRPT----AKQLW------------------KPPVGILEVGILGAQGLLPMKMKDGRG--ST 636 (1026)
Q Consensus 587 ---~~~~---~~~~~~~d~~~~----~~~~~------------------~~~~g~L~v~v~~a~~L~~~~~~~~~~--~~ 636 (1026)
+... +.....++..|. ..++| ++..--|+|.|-.-.+...-+. ++.| .+
T Consensus 793 ~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~~lrviiWnt~~v~l~dd-~~~ge~~s 871 (1105)
T KOG1326|consen 793 MNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKYELRVIIWNTDKVRLNDD-EITGEKMS 871 (1105)
T ss_pred hhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhheeEEEEEeeccceeecCc-cceeeecc
Confidence 0000 000000111111 11111 1223457887776666655332 3333 68
Q ss_pred CcEEEEEE-C--CEEEEeeeecCCC----CceeecEEEEEe------------------e----CCCCEEEEEEEeCCCC
Q 001696 637 DAYCIAKY-G--QKWVRTRTILDTF----NPKWNEQYTWEV------------------Y----DPCTVITLGVFDNCHL 687 (1026)
Q Consensus 637 dpyv~v~~-g--~~~~~T~~~~~t~----~P~wne~~~~~v------------------~----~~~~~l~i~v~d~~~~ 687 (1026)
|.||+--+ | .++++|.+.++++ |-.|.-.|.|.- . .....|.|+|||+|.+
T Consensus 872 dIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke~~ws~dete~k~p~rl~iqiWD~d~f 951 (1105)
T KOG1326|consen 872 DIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKEYSWSLDETEFKIPARLIIQIWDNDKF 951 (1105)
T ss_pred ceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhhhccccccccccCchheEEEecccCcc
Confidence 99999866 3 4568999988765 666754443311 0 0123599999999998
Q ss_pred CCCCccCCCCCCCCCeeEEEEEEcccccCC----------------------ceEeeeEeeeecCCCCCccCcEEEEEEE
Q 001696 688 GGGEKQNGSSAVRDSRIGKVRIRLSTLEAH----------------------RIYTHSYPLLVLHPHGVKKMGELQLAIR 745 (1026)
Q Consensus 688 ~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~----------------------~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 745 (1026)
+ +|++||...++|+++..+ +.+..|||+.........-+|.|++.+.
T Consensus 952 s-----------~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWwP~~a~~~~~~~l~Gkvem~le 1020 (1105)
T KOG1326|consen 952 S-----------KDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWWPCQAEEGDAKVLAGKVEMSLE 1020 (1105)
T ss_pred C-----------hhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccceeeecCCCcceecceeeeehh
Confidence 6 899999999999997432 2467899999763322223899988774
Q ss_pred EeecchhHhHhhhCCCCCCccccCCCCchhhHH
Q 001696 746 FTIFSLASMIYVYGHPLLPKMHYLHPFTVNQVD 778 (1026)
Q Consensus 746 f~~~~~~~~~~~y~~~~~p~~~~~~p~~~~~~~ 778 (1026)
.+...++...|.|+++.+
T Consensus 1021 ---------------ilt~~EA~~~PAG~gr~e 1038 (1105)
T KOG1326|consen 1021 ---------------ILTEKEADERPAGKGRDE 1038 (1105)
T ss_pred ---------------hhhhhhhhhCccccCCCC
Confidence 234556677888876444
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=250.73 Aligned_cols=213 Identities=27% Similarity=0.405 Sum_probs=178.7
Q ss_pred EEEEEEEEeEecCCCCCCCCCCcEEEEEEC---CeEEEeeeecCCCCCCcccceeEEEeeCC--CcCeEEEEEEEccCCC
Q 001696 449 YLRVNVIEAQDIVPNDRNRLPEGFVKVQVG---NQVLKTKICPTPTTNPLWNEDLVFVAAEP--FEEQLFLTVEDRVHAS 523 (1026)
Q Consensus 449 ~l~V~I~~a~~L~~~d~~~~~dpyV~v~lg---~~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~d~~~ 523 (1026)
.|.|+|++|++|+.++..+.+||||++++. ..+.+|++. ++++||.|||+|.|.+... ....|.++|||.|.++
T Consensus 168 ~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~-r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfs 246 (421)
T KOG1028|consen 168 LLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVH-RKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFS 246 (421)
T ss_pred EEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeee-ecCcCCccccceEeecCHHHhccCEEEEEEEecCCcc
Confidence 699999999999999977789999999993 357899999 7999999999999996433 6679999999999999
Q ss_pred CCceeEEEEEeCcccccccCCCCccceeEEcccCCCCchhhhhhccccccceEEEEEEecCCccccCCcccccCCccccc
Q 001696 524 KDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFSSRVHLRVCLEGGYHVLDESTMYISDQRPTA 603 (1026)
Q Consensus 524 ~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~d~~~~~ 603 (1026)
++++||++.++|..+... .....|.++....... ....|+|.+++++.+
T Consensus 247 r~~~iGev~~~l~~~~~~----~~~~~w~~l~~~~~~~--------~~~~gel~~sL~Y~p------------------- 295 (421)
T KOG1028|consen 247 RHDFIGEVILPLGEVDLL----STTLFWKDLQPSSTDS--------EELAGELLLSLCYLP------------------- 295 (421)
T ss_pred cccEEEEEEecCcccccc----ccceeeeccccccCCc--------ccccceEEEEEEeec-------------------
Confidence 999999999999887643 2257799998874321 112289999998533
Q ss_pred cccCCCCceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CC---EEEEeeeecCCCCceeecEEEEEeeCC---CC
Q 001696 604 KQLWKPPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKY--GQ---KWVRTRTILDTFNPKWNEQYTWEVYDP---CT 675 (1026)
Q Consensus 604 ~~~~~~~~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--g~---~~~~T~~~~~t~~P~wne~~~~~v~~~---~~ 675 (1026)
.-|.|+|.|++|++|..+ +..+.+||||++.+ +. .+.+|.+++++.||+|||+|.|.|... ..
T Consensus 296 ------~~g~ltv~v~kar~L~~~---~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~ 366 (421)
T KOG1028|consen 296 ------TAGRLTVVVIKARNLKSM---DVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEV 366 (421)
T ss_pred ------CCCeEEEEEEEecCCCcc---cCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhhee
Confidence 348999999999999998 77889999999977 33 358999999999999999999988742 44
Q ss_pred EEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEccc
Q 001696 676 VITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLST 713 (1026)
Q Consensus 676 ~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~ 713 (1026)
.|.|+|||++.++ .+++||++.+....
T Consensus 367 ~l~l~V~d~d~~~-----------~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 367 SLELTVWDHDTLG-----------SNDLIGRCILGSDS 393 (421)
T ss_pred EEEEEEEEccccc-----------ccceeeEEEecCCC
Confidence 6999999999986 67799998888775
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-22 Score=224.67 Aligned_cols=245 Identities=23% Similarity=0.364 Sum_probs=196.7
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEeCC-ceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCCC
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLN-QLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIP 80 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~ 80 (1026)
.|.|+|.+|+||++.+..|..||||.|.++. ...+|.++.+|+.|.|.|.|+|.+...- ..|.|.|||.| .+
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F----~~l~fYv~D~d---~~ 78 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTF----RYLSFYVWDRD---LK 78 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcce----eeEEEEEeccc---cc
Confidence 4889999999999999999999999999976 6889999999999999999999998765 58999999933 46
Q ss_pred CCccceeEEecCccccccCCceeEEeeccccccccccccccceeEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCC
Q 001696 81 GRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYISPQSETTQPPTSSLPKPKSPKNTTNLDSKTFTA 160 (1026)
Q Consensus 81 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (1026)
+|+.||++.|.-+++...+ ..+.|+.|++.+..+.++|+|++++.+.+.....
T Consensus 79 ~D~~IGKvai~re~l~~~~-~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~~-------------------------- 131 (800)
T KOG2059|consen 79 RDDIIGKVAIKREDLHMYP-GKDTWFSLQPVDPDSEVQGKVHLELALTEAIQSS-------------------------- 131 (800)
T ss_pred cccccceeeeeHHHHhhCC-CCccceeccccCCChhhceeEEEEEEeccccCCC--------------------------
Confidence 9999999999999988776 4889999999999999999999998775432210
Q ss_pred CcchhhccccCCCCCCCccccccccccccccCCcCCCCcchhhhcccccccCCCCCCCCCCCCCCccccccCcCCCCCCC
Q 001696 161 LPKVEELAAVDAPKSLPEEEISRISLKEDIKEPAKVTVEPIQEFLKQQVVLQPGQSVEKQPQGVPFTMHSMNLQQGRPGD 240 (1026)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1026)
T Consensus 132 -------------------------------------------------------------------------------- 131 (800)
T KOG2059|consen 132 -------------------------------------------------------------------------------- 131 (800)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCcccCCCCCCCCCCCCCCCCCCCcccccceeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---
Q 001696 241 QEEYNLKDTNPQLGERWPNGGGYGGRGWMSGERFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNY--- 317 (1026)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--- 317 (1026)
.+..++++++++.+.. ++.+|||+++...+.
T Consensus 132 ---------------------------------------------~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~ 165 (800)
T KOG2059|consen 132 ---------------------------------------------GLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKL 165 (800)
T ss_pred ---------------------------------------------cchhhhhhhcccCcee-CCCCCcceEEeecccchh
Confidence 0112223334554544 345999999998764
Q ss_pred -eeEeeeecCCCCCeEeEEEEEEecCC---------------CCCeEEEEEEe-CCCCCCCceeEEEEEEccccCCCCCC
Q 001696 318 -KGRTKHFEKRMNPEWNQVFAFSKERI---------------QSSMLEVFLKD-KEMVGRDDYLGRVAFDLNEVPTRVPP 380 (1026)
Q Consensus 318 -~~kT~~~~~t~nP~wne~f~f~v~~~---------------~~~~L~v~V~d-~~~~~~d~~lG~~~i~l~~l~~~~~~ 380 (1026)
..+|+++++|.+|.|+|.|.|.+... ....|.+++|+ .+.+..+.|+|++.+++..+.....+
T Consensus 166 ~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p 245 (800)
T KOG2059|consen 166 KEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSP 245 (800)
T ss_pred hccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCc
Confidence 35999999999999999999987543 23578899998 56666799999999999988855444
Q ss_pred CCCCCCEEEEeecCCCCC-----cccceEEEEEEec
Q 001696 381 DSPLAPQWYRLEDRRGEG-----KVRGQTMLAIWMG 411 (1026)
Q Consensus 381 ~~~~~~~w~~L~~~~~~~-----~~~G~i~l~~~~~ 411 (1026)
. .||.|.....++ ...|.+++.+.|.
T Consensus 246 ~-----~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 246 A-----AWYYLQPRPNGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred c-----ceEEEecCCCcccCCCCCCccceeeeEEee
Confidence 4 899998875432 2568888888775
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-21 Score=217.09 Aligned_cols=252 Identities=22% Similarity=0.340 Sum_probs=201.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCce
Q 001696 285 SYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNY-KGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDY 363 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 363 (1026)
..|.|+|.+|+||++.+..|..||||.|.++++ .+||.++.+++.|.|.|+|+|.+.... ..|.|-|||.| +++|+.
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F-~~l~fYv~D~d-~~~D~~ 82 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTF-RYLSFYVWDRD-LKRDDI 82 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcce-eeEEEEEeccc-cccccc
Confidence 358999999999999999999999999999985 789999999999999999999986543 68999999999 889999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecccCchhhhhcccccCccccCCCcccccccccc
Q 001696 364 LGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYV 443 (1026)
Q Consensus 364 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~r~~~~~ 443 (1026)
||.+.|.-.+|......+ .|+.|......+.+.|+|++.+.+.....+
T Consensus 83 IGKvai~re~l~~~~~~d-----~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~--------------------------- 130 (800)
T KOG2059|consen 83 IGKVAIKREDLHMYPGKD-----TWFSLQPVDPDSEVQGKVHLELALTEAIQS--------------------------- 130 (800)
T ss_pred cceeeeeHHHHhhCCCCc-----cceeccccCCChhhceeEEEEEEeccccCC---------------------------
Confidence 999999988887766555 999999998888899999999877543221
Q ss_pred CCceEEEEEEEEEeEecCCCCCCCCCCcEEEEEECCe----EEEeeeecCCCCCCcccceeEEEeeCC------------
Q 001696 444 SPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQ----VLKTKICPTPTTNPLWNEDLVFVAAEP------------ 507 (1026)
Q Consensus 444 ~p~~~~l~V~I~~a~~L~~~d~~~~~dpyV~v~lg~~----~~kT~~~~~~t~nP~wne~f~f~v~~~------------ 507 (1026)
..+...+++++++.+.. ++.+|||++|...+. ..+|++. ++|.+|.|+|.|+|.+...
T Consensus 131 ----~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~-kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~ 204 (800)
T KOG2059|consen 131 ----SGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVK-KKTTNPQFDEVFYFEVTREESYSKKSLFMPE 204 (800)
T ss_pred ----CcchhhhhhhcccCcee-CCCCCcceEEeecccchhhcccccee-eeccCcchhhheeeeeccccccccchhcCcc
Confidence 12556666777776655 445999999999553 4599999 7999999999999998654
Q ss_pred ---CcCeEEEEEEE-ccCCCCCceeEEEEEeCcccccccCCCCccceeEEcccCCCCchhhhhhccccccceEEEEEEec
Q 001696 508 ---FEEQLFLTVED-RVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFSSRVHLRVCLE 583 (1026)
Q Consensus 508 ---~~~~L~i~V~d-~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~g~l~l~~~~~ 583 (1026)
..-.|++.+|+ .+....++++|++.+++..+... .....||-|+..+.++. ...+.-.|.+.+.+.+.
T Consensus 205 ~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~----s~p~~W~~Lqp~~~g~~----~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 205 EEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQK----SSPAAWYYLQPRPNGEK----SSDGGDLGSLRLNVTYT 276 (800)
T ss_pred cCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhc----cCccceEEEecCCCccc----CCCCCCccceeeeEEee
Confidence 23468888898 45566799999999999987633 34678999998764421 12334457777777754
Q ss_pred C
Q 001696 584 G 584 (1026)
Q Consensus 584 ~ 584 (1026)
.
T Consensus 277 ~ 277 (800)
T KOG2059|consen 277 E 277 (800)
T ss_pred e
Confidence 3
|
|
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-21 Score=187.95 Aligned_cols=149 Identities=63% Similarity=1.045 Sum_probs=127.7
Q ss_pred EEEEEEEeEecCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCCcccceeEEEeeCCCcCeEEEEEEEccCCCCCceeE
Q 001696 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASKDEVLG 529 (1026)
Q Consensus 450 l~V~I~~a~~L~~~d~~~~~dpyV~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~~lG 529 (1026)
|+|+|++|++|+..+.++.+||||+++++++.++|+++.+++.||.|||.|.|.+.++....|.|+|+|++..++|++||
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG 81 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLG 81 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEE
Confidence 89999999999999999999999999999999999998433799999999999998877789999999999888999999
Q ss_pred EEEEeCcccccccCCCCccceeEEcccCCCCchhhhhhccccccceEEEEEEecCCccccCCcccccCCccc
Q 001696 530 KISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFSSRVHLRVCLEGGYHVLDESTMYISDQRP 601 (1026)
Q Consensus 530 ~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~d~~~ 601 (1026)
++.++|.++....+.+....+||+|.+..... + .++..+..|+|++++++.+.+++.+++.+|++|++|
T Consensus 82 ~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~-~--~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~ 150 (150)
T cd04019 82 RAVIPLNDIERRVDDRPVPSRWFSLERPGGAM-E--QKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150 (150)
T ss_pred EEEEEHHHCcccCCCCccCCceEECcCCCCcc-c--ccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence 99999999876434445679999999874210 0 112345689999999999999999999999999875
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.8e-21 Score=179.87 Aligned_cols=122 Identities=71% Similarity=1.186 Sum_probs=107.1
Q ss_pred EEEEEEEEecC---CCCCccCCCCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCC
Q 001696 613 ILEVGILGAQG---LLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGG 689 (1026)
Q Consensus 613 ~L~v~v~~a~~---L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~ 689 (1026)
+|+|+|++|+| |..+ |+.|.+||||+|++|++++||+++++++||+|||+|.|.+.++...|.|+|||++.++-
T Consensus 1 ~L~v~v~~A~~~~~l~~~---d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~ 77 (126)
T cd08379 1 ILEVGILGAQGLDVLRAK---DGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHW 77 (126)
T ss_pred CeEEEEEEeECCcccccc---ccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccc
Confidence 48999999999 5554 88899999999999999999999999999999999999999888899999999987520
Q ss_pred CCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEE
Q 001696 690 GEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQL 742 (1026)
Q Consensus 690 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l 742 (1026)
+ +...+|++||++.|+|+.+..+..+.+||+|...++++.++.|+|++
T Consensus 78 ~-----~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 78 K-----EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred c-----ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 0 00136999999999999999999999999999888778888899875
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.8e-21 Score=177.30 Aligned_cols=118 Identities=22% Similarity=0.361 Sum_probs=104.0
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecC-CCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCC
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILD-TFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGG 690 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~-t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 690 (1026)
|.|+|+|++|++|+.. + .|++||||+|.+|++++||+++.+ +.||.|||.|.|.+.+....|.|+|||++.++
T Consensus 2 g~L~v~v~~Ak~l~~~---~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~-- 75 (121)
T cd04016 2 GRLSITVVQAKLVKNY---G-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFT-- 75 (121)
T ss_pred cEEEEEEEEccCCCcC---C-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCc--
Confidence 8999999999988764 4 689999999999999999999976 89999999999999877678999999999875
Q ss_pred CccCCCCCCCCCeeEEEEEEcc-cccCCceEeeeEeeeecCCCCCccCcEEEEEEEE
Q 001696 691 EKQNGSSAVRDSRIGKVRIRLS-TLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRF 746 (1026)
Q Consensus 691 ~~~~~~~~~~~~~lG~~~i~l~-~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 746 (1026)
+|++||.+.|+|. .+..|+....||+|... .|.++.|+|+|.|+|
T Consensus 76 ---------~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~--~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 ---------MDERIAWTHITIPESVFNGETLDDWYSLSGK--QGEDKEGMINLVFSY 121 (121)
T ss_pred ---------CCceEEEEEEECchhccCCCCccccEeCcCc--cCCCCceEEEEEEeC
Confidence 7999999999996 58888888999999743 344567999999976
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.84 E-value=8e-21 Score=181.69 Aligned_cols=127 Identities=53% Similarity=0.875 Sum_probs=109.8
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEeCCceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCCCC
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIPG 81 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~ 81 (1026)
+|+|+|++|++|++.+..|.+||||+|++++++++|+++.++.||+|||+|.|.+..+.......|.|+|||++.. ..+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~-~~~ 79 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRS-GRR 79 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCC-cCC
Confidence 5899999999999999889999999999999999999999999999999999999865443346899999994432 126
Q ss_pred CccceeEEecCccccccCCceeEEeeccccccccccccccceeEEecC
Q 001696 82 RHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYISP 129 (1026)
Q Consensus 82 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 129 (1026)
++|||++.+++.++...+.....||+|++++..++++|+|+|++++.+
T Consensus 80 d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 127 (127)
T cd04022 80 RSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYITD 127 (127)
T ss_pred CCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEcC
Confidence 899999999999988555557899999988767789999999998754
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-19 Score=167.67 Aligned_cols=118 Identities=21% Similarity=0.320 Sum_probs=102.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecC-CCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCce
Q 001696 285 SYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEK-RMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDY 363 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 363 (1026)
|.|.|+|++|++++..+ .|++||||+|.+++++.+|+++.+ +.||+|||+|.|.+.+. ...|.|+|||++.+++|++
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~dd~ 79 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMDER 79 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCCce
Confidence 68999999999988777 789999999999999999999876 79999999999999754 3689999999999999999
Q ss_pred eEEEEEEcc-ccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEe
Q 001696 364 LGRVAFDLN-EVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWM 410 (1026)
Q Consensus 364 lG~~~i~l~-~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 410 (1026)
||.+.+++. .+..+...+ .||+|...++. ...|+|+++++|
T Consensus 80 iG~~~i~l~~~~~~g~~~~-----~W~~L~~~~~~-~~~g~i~l~l~y 121 (121)
T cd04016 80 IAWTHITIPESVFNGETLD-----DWYSLSGKQGE-DKEGMINLVFSY 121 (121)
T ss_pred EEEEEEECchhccCCCCcc-----ccEeCcCccCC-CCceEEEEEEeC
Confidence 999999996 466554444 99999986654 567999999876
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-19 Score=172.89 Aligned_cols=117 Identities=30% Similarity=0.436 Sum_probs=101.6
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeC------CCCEEEEEEEeCCCC
Q 001696 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYD------PCTVITLGVFDNCHL 687 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~------~~~~l~i~v~d~~~~ 687 (1026)
++|+|++|+||+++ +..|.+||||+|++++.++||+++++++||+|||.|.|.+.. ....|.|.|||++.+
T Consensus 1 ~~V~V~~A~~L~~~---d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCK---GKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCC---CCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 57999999999987 667899999999999999999999999999999999999977 366899999999986
Q ss_pred CCCCccCCCCCCCCCeeEEEEEEccccc--CCceEeeeEeeeecCCCCCccCcEEEEEE
Q 001696 688 GGGEKQNGSSAVRDSRIGKVRIRLSTLE--AHRIYTHSYPLLVLHPHGVKKMGELQLAI 744 (1026)
Q Consensus 688 ~~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 744 (1026)
+ +|++||++.|+|+++. .+.....||+|........+..|+|+|++
T Consensus 78 ~-----------~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 78 G-----------LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred C-----------CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 5 7999999999999987 66677899999854433334479999876
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.7e-19 Score=167.39 Aligned_cols=119 Identities=26% Similarity=0.403 Sum_probs=106.2
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-EEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCCCc
Q 001696 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ-KWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEK 692 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~-~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~ 692 (1026)
|+|+|++|+||+.+ +..|.+||||++.+++ ..++|++++++.||.|||.|.|.+.++...|.|+|||++.++
T Consensus 2 L~v~v~~a~~L~~~---d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~---- 74 (121)
T cd04042 2 LDIHLKEGRNLAAR---DRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGL---- 74 (121)
T ss_pred eEEEEEEeeCCCCc---CCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCC----
Confidence 78999999999987 6678999999999987 679999999999999999999999887889999999999865
Q ss_pred cCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEEee
Q 001696 693 QNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTI 748 (1026)
Q Consensus 693 ~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 748 (1026)
++++||++.++|+++..+.....|++|.+.. +.+..|+|+|+++|+|
T Consensus 75 -------~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 75 -------TDDFMGSAFVDLSTLELNKPTEVKLKLEDPN--SDEDLGYISLVVTLTP 121 (121)
T ss_pred -------CCcceEEEEEEHHHcCCCCCeEEEEECCCCC--CccCceEEEEEEEECC
Confidence 7999999999999999888889999997433 3356899999999864
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-19 Score=173.44 Aligned_cols=137 Identities=23% Similarity=0.308 Sum_probs=111.0
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecC-CCCceeecEEEEEeeCC-CCEEEEEEEeCCCCCCC
Q 001696 613 ILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILD-TFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGGG 690 (1026)
Q Consensus 613 ~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~-t~~P~wne~~~~~v~~~-~~~l~i~v~d~~~~~~~ 690 (1026)
.|+|+|++|+||+++ +..|.+||||++.++++..+|+++.+ ++||.|||.|.|.+.++ .+.|.|.|+|++.++
T Consensus 1 ~L~V~Vi~A~~L~~~---d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~-- 75 (150)
T cd04019 1 YLRVTVIEAQDLVPS---DKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPN-- 75 (150)
T ss_pred CEEEEEEEeECCCCC---CCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCC--
Confidence 388999999999987 66789999999999999999999976 69999999999999876 458999999998754
Q ss_pred CccCCCCCCCCCeeEEEEEEcccccCC----ceEeeeEeeeecCC-----CCCccCcEEEEEEEEeecc-hhHhHhhhCC
Q 001696 691 EKQNGSSAVRDSRIGKVRIRLSTLEAH----RIYTHSYPLLVLHP-----HGVKKMGELQLAIRFTIFS-LASMIYVYGH 760 (1026)
Q Consensus 691 ~~~~~~~~~~~~~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~-----~g~~~~G~i~l~~~f~~~~-~~~~~~~y~~ 760 (1026)
++++||++.|+|+++..+ .....||+|..... +..+..|+|+|++.|.... .......|.+
T Consensus 76 ---------~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~ 146 (150)
T cd04019 76 ---------KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHVLDESTHYSS 146 (150)
T ss_pred ---------CCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceEeeccccccc
Confidence 789999999999999643 45689999985432 2234479999999998542 3344455655
Q ss_pred CCC
Q 001696 761 PLL 763 (1026)
Q Consensus 761 ~~~ 763 (1026)
.+.
T Consensus 147 ~~~ 149 (150)
T cd04019 147 DLR 149 (150)
T ss_pred CCC
Confidence 543
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-19 Score=170.26 Aligned_cols=117 Identities=30% Similarity=0.500 Sum_probs=101.6
Q ss_pred CceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCC
Q 001696 610 PVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGG 689 (1026)
Q Consensus 610 ~~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~ 689 (1026)
.+|.|+|.|.+|.||... |..+++||||++++|+++.||+++++++||+|||.|+|.|.+++..|.++|||+|.++
T Consensus 4 ~vGLL~v~v~~g~~L~~r---D~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs- 79 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIR---DFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFS- 79 (168)
T ss_pred cceEEEEEEEeecCeeee---ccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCC-
Confidence 469999999999999986 6668999999999999999999999999999999999999999999999999999976
Q ss_pred CCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEE
Q 001696 690 GEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAI 744 (1026)
Q Consensus 690 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 744 (1026)
.|+++|.+.|+|..+.... ..+| |....+.|... |+|.++.
T Consensus 80 ----------~dD~mG~A~I~l~p~~~~~--~~~~-l~~~~~~gt~~-~~v~~s~ 120 (168)
T KOG1030|consen 80 ----------SDDFMGEATIPLKPLLEAQ--KMDY-LKLELLTGTAI-GKVLLSR 120 (168)
T ss_pred ----------cccccceeeeccHHHHHHh--hhhc-cccccCCCcEe-eEEEecc
Confidence 8999999999999997766 4566 65555555544 6665543
|
|
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.6e-19 Score=173.40 Aligned_cols=124 Identities=27% Similarity=0.364 Sum_probs=108.5
Q ss_pred eEEEEEEEEecCCCCCccC---------------------------CCCCCcCcEEEEEECCEE-EEeeeecCCCCceee
Q 001696 612 GILEVGILGAQGLLPMKMK---------------------------DGRGSTDAYCIAKYGQKW-VRTRTILDTFNPKWN 663 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~---------------------------~~~~~~dpyv~v~~g~~~-~~T~~~~~t~~P~wn 663 (1026)
|.|.|+|++|++|++|+.. .+.|.+||||+|.+++.+ .||++++++.||.||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 8999999999999998621 246789999999998765 699999999999999
Q ss_pred cEEEEEeeCCCCEEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEE
Q 001696 664 EQYTWEVYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLA 743 (1026)
Q Consensus 664 e~~~~~v~~~~~~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~ 743 (1026)
|.|.|.+..+.+.|.|.|+|++.++ +++||++.|+|+++..+.....||+|.....++.+..|+|+|+
T Consensus 87 E~F~~~~~~~~~~l~~~V~d~d~~~------------~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~ 154 (158)
T cd04015 87 ESFHIYCAHYASHVEFTVKDNDVVG------------AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVS 154 (158)
T ss_pred eEEEEEccCCCCEEEEEEEeCCCcC------------CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEE
Confidence 9999999888888999999998753 6899999999999998888899999986655555557899999
Q ss_pred EEEe
Q 001696 744 IRFT 747 (1026)
Q Consensus 744 ~~f~ 747 (1026)
++|+
T Consensus 155 ~~f~ 158 (158)
T cd04015 155 LQFT 158 (158)
T ss_pred EEEC
Confidence 9983
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.9e-19 Score=164.88 Aligned_cols=121 Identities=70% Similarity=1.213 Sum_probs=106.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCceeE
Q 001696 286 YLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLG 365 (1026)
Q Consensus 286 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG 365 (1026)
+|.|+|++|+||+.+ .+||||++.+++++.+|++++++.||+|||+|.|.+..+....|.|+|||++.. ++++||
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG 75 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLG 75 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceee
Confidence 388999999999887 689999999999999999999999999999999998776678999999999987 899999
Q ss_pred EEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecc
Q 001696 366 RVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGT 412 (1026)
Q Consensus 366 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 412 (1026)
++.+++.++......++....+||+|.+..+ ++..|+|++++||++
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~~~~ 121 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVWFGT 121 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEEecC
Confidence 9999999997765444455669999998765 578899999999963
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.7e-19 Score=165.89 Aligned_cols=117 Identities=22% Similarity=0.351 Sum_probs=98.1
Q ss_pred ceEEEEeecCC---CccCCCCCCCCCEEEEEeCCceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCC
Q 001696 2 KLVVEVVDAYD---LMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRP 78 (1026)
Q Consensus 2 ~L~V~v~~a~~---L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~ 78 (1026)
.|+|+|++|+| |..+|..|++||||+|++++++.+|+++++++||+|||+|.|.+.+.. ..|.|+|||.+..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~----~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPC----TVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCC----CEEEEEEEECCCcc
Confidence 38999999999 888999999999999999999999999999999999999999997655 48999999944421
Q ss_pred ----CCCCccceeEEecCccccccCCceeEEeeccccc-cccccccccce
Q 001696 79 ----IPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKW-FLSSVKGEVGL 123 (1026)
Q Consensus 79 ----~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~-~~~~~~G~l~l 123 (1026)
..+|++||++.|+|.++.... ....||+|.... ...+..|+|++
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~-~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDR-VYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCC-EEeeEEEeEeCCCCCccCCcEEEe
Confidence 137999999999999988655 378899998654 22345677764
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-18 Score=165.36 Aligned_cols=119 Identities=27% Similarity=0.501 Sum_probs=101.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecC-----CCCCeEEEEEEeCCCCCCC
Q 001696 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKER-----IQSSMLEVFLKDKEMVGRD 361 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~-----~~~~~L~v~V~d~~~~~~d 361 (1026)
++|+|++|+||+.++..|.+||||+|.+++.+++|++++++.||+|||+|.|.+.. +....|.|+|||++.+++|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 47999999999999989999999999999999999999999999999999999865 3567899999999999899
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCC-CcccceEEEEE
Q 001696 362 DYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGE-GKVRGQTMLAI 408 (1026)
Q Consensus 362 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~i~l~~ 408 (1026)
++||++.|+|.++..... .....||+|....+. .+..|+|++++
T Consensus 81 ~~iG~~~i~l~~l~~~~~---~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKG---RRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred ceeEEEEEEHHHhhccCC---CcccEEEECcCCCCCCccccceEEEEe
Confidence 999999999999873221 123499999865442 35789999876
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-18 Score=163.93 Aligned_cols=121 Identities=33% Similarity=0.506 Sum_probs=105.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCC---CCeEEEEEEeCCCCC-CCc
Q 001696 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQ---SSMLEVFLKDKEMVG-RDD 362 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~---~~~L~v~V~d~~~~~-~d~ 362 (1026)
|+|+|++|++|++.+..|.+||||+|.+++++++|++++++.||.|||.|.|.+..+. ...|.|+|||.+.++ +++
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~ 81 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRS 81 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCC
Confidence 8899999999999998899999999999999999999999999999999999986542 468999999998886 899
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEec
Q 001696 363 YLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMG 411 (1026)
Q Consensus 363 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 411 (1026)
+||++.+++.++.... .....||+|+.....++.+|+|+++++++
T Consensus 82 ~lG~v~i~l~~l~~~~----~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 82 FLGRVRISGTSFVPPS----EAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred eeeEEEEcHHHcCCCC----CccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 9999999999987321 23459999997654456899999999885
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-18 Score=161.01 Aligned_cols=119 Identities=26% Similarity=0.409 Sum_probs=102.9
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-EEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCCCc
Q 001696 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQK-WVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEK 692 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~-~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~ 692 (1026)
|.|.|++|+||++++ +..|.+||||.|.++++ .++|+++++|+||.|||.|.|.|.+....|.|.|||++.++
T Consensus 2 l~v~v~~a~~L~~~~--~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~---- 75 (121)
T cd08401 2 LKIKIGEAKNLPPRS--GPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLR---- 75 (121)
T ss_pred eEEEEEEccCCCCCC--CCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCC----
Confidence 679999999999873 23578999999999865 58999999999999999999999877678999999999865
Q ss_pred cCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEE
Q 001696 693 QNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRF 746 (1026)
Q Consensus 693 ~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 746 (1026)
++++||++.|+|+++..+.....||+|......+. ..|+|+|+++|
T Consensus 76 -------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~-~~G~i~l~~~~ 121 (121)
T cd08401 76 -------RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSE-VQGKVHLELRL 121 (121)
T ss_pred -------CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCc-ccEEEEEEEEC
Confidence 79999999999999988888899999986544333 46999999875
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-18 Score=158.12 Aligned_cols=109 Identities=19% Similarity=0.387 Sum_probs=93.3
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eeeEeeeecCCCCCeEeEEEEEEec--CCCCC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN----YKGRTKHFEKRMNPEWNQVFAFSKE--RIQSS 346 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~----~~~kT~~~~~t~nP~wne~f~f~v~--~~~~~ 346 (1026)
+|++.|+. ..+.|.|+|++|++|+ . .|.+||||+|++.. .+.+|+++++|+||+|||+|.|.+. +....
T Consensus 4 ~fsL~Y~~--~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~ 78 (118)
T cd08677 4 HYSLSYDK--QKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDG 78 (118)
T ss_pred EEEEEEcC--cCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCc
Confidence 78999987 6799999999999998 2 46699999999964 4779999999999999999999984 45578
Q ss_pred eEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 001696 347 MLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRL 391 (1026)
Q Consensus 347 ~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 391 (1026)
.|.|+|||+|.++++++||++.+++.++......+ .|..|
T Consensus 79 tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~-----~W~~~ 118 (118)
T cd08677 79 TLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAA-----QWVDL 118 (118)
T ss_pred EEEEEEEeCCCCCCCceEEEEEEccccccCCcccc-----chhcC
Confidence 99999999999999999999999999875544333 67654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-18 Score=162.72 Aligned_cols=117 Identities=23% Similarity=0.350 Sum_probs=100.7
Q ss_pred eEEEEeecCCCccCC-CCCCCCCEEEEEeCCc-eeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCCC
Q 001696 3 LVVEVVDAYDLMPKD-GEGSASPFAEVDFLNQ-LSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIP 80 (1026)
Q Consensus 3 L~V~v~~a~~L~~~~-~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~ 80 (1026)
|.|+|++|+||++.+ ..|.+||||+|++++. .++|+++++|+||+|||+|.|.+.... ..|.|.|||+++. +
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~----~~l~~~v~d~~~~--~ 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTF----RHLSFYIYDRDVL--R 75 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCC----CEEEEEEEECCCC--C
Confidence 789999999999874 4678999999999764 689999999999999999999997543 5899999997664 4
Q ss_pred CCccceeEEecCccccccCCceeEEeeccccccccccccccceeEE
Q 001696 81 GRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIY 126 (1026)
Q Consensus 81 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 126 (1026)
++++||++.++++++.... ....||+|++....++.+|+|++++.
T Consensus 76 ~~~~iG~~~i~l~~l~~~~-~~~~w~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd08401 76 RDSVIGKVAIKKEDLHKYY-GKDTWFPLQPVDADSEVQGKVHLELR 120 (121)
T ss_pred CCceEEEEEEEHHHccCCC-CcEeeEEEEccCCCCcccEEEEEEEE
Confidence 8999999999999988654 37899999987666677999999875
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.7e-18 Score=161.24 Aligned_cols=109 Identities=28% Similarity=0.509 Sum_probs=96.6
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEe---cCCC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSK---ERIQ 344 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v---~~~~ 344 (1026)
+|++.|+ .+.|.|+|++|+||+.++ .+.+||||+|++.+ .+++|++++++.||+|||+|.|.+ .+..
T Consensus 5 ~~~l~y~----~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~ 79 (122)
T cd08381 5 KLSISYK----NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQ 79 (122)
T ss_pred EEEEEEe----CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhC
Confidence 8899997 488999999999999999 88999999999973 468999999999999999999986 3445
Q ss_pred CCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 001696 345 SSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRL 391 (1026)
Q Consensus 345 ~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 391 (1026)
...|.|+|||++.++++++||++.++|.++...... ..||+|
T Consensus 80 ~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~-----~~W~~L 121 (122)
T cd08381 80 QRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQET-----EKWYPL 121 (122)
T ss_pred CCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCc-----cceEEC
Confidence 689999999999999999999999999999866443 389987
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-18 Score=162.20 Aligned_cols=115 Identities=32% Similarity=0.430 Sum_probs=98.7
Q ss_pred eEEEEeecCCCccCCCCCCCCCEEEEEeCCceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCCCCC
Q 001696 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIPGR 82 (1026)
Q Consensus 3 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~d 82 (1026)
|.|+|++|+||+.. .+||||+|++++.+.+|+++++|.||+|||+|.|.+.... ...|.|+|||++.. ++
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~---~~~L~~~v~d~d~~---~~ 71 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQ---GSTLEVSVWDKDKA---KD 71 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCc---CCEEEEEEEeCCCC---cC
Confidence 89999999999876 7999999999999999999999999999999999987643 26899999995432 78
Q ss_pred ccceeEEecCccccccC----CceeEEeeccccccccccccccceeEEec
Q 001696 83 HFLGRVRIPCSNLVRKG----EEVYQRFPLEKKWFLSSVKGEVGLKIYIS 128 (1026)
Q Consensus 83 ~~lG~~~i~l~~l~~~~----~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 128 (1026)
++||++.+++.++.... .....||+|++... ++.+|+|+|.++|.
T Consensus 72 ~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~~~ 120 (121)
T cd08378 72 DFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVWFG 120 (121)
T ss_pred ceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEEec
Confidence 99999999999986532 22568999998754 78899999999874
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-18 Score=161.77 Aligned_cols=116 Identities=26% Similarity=0.474 Sum_probs=100.9
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeec-CCCCceeecEEEEEeeCC-CCEEEEEEEeCCCCCC
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTIL-DTFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGG 689 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~-~t~~P~wne~~~~~v~~~-~~~l~i~v~d~~~~~~ 689 (1026)
|.|+|.|++|+||+.. +..+.+||||+|.+++...+|+++. ++.||.|||.|.|.+..+ .+.|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-- 75 (118)
T cd08681 1 GTLVVVVLKARNLPNK---RKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR-- 75 (118)
T ss_pred CEEEEEEEEccCCCCC---CcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC--
Confidence 6899999999999987 6678999999999999999999985 479999999999999874 67899999998763
Q ss_pred CCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEE
Q 001696 690 GEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRF 746 (1026)
Q Consensus 690 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 746 (1026)
.|++||++.++++++..+....+||+|.. .| +..|+|+|++.|
T Consensus 76 ----------~~~~iG~~~~~l~~~~~~~~~~~w~~L~~---~~-~~~G~i~l~l~f 118 (118)
T cd08681 76 ----------KPDLIGDTEVDLSPALKEGEFDDWYELTL---KG-RYAGEVYLELTF 118 (118)
T ss_pred ----------CCcceEEEEEecHHHhhcCCCCCcEEecc---CC-cEeeEEEEEEEC
Confidence 38999999999999877766799999973 22 456999999976
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-17 Score=161.11 Aligned_cols=119 Identities=28% Similarity=0.473 Sum_probs=102.4
Q ss_pred CCCceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeCC-CCEEEEEEEeCCC
Q 001696 608 KPPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDP-CTVITLGVFDNCH 686 (1026)
Q Consensus 608 ~~~~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~v~d~~~ 686 (1026)
...+|.|+|+|++|+||+++ +..|.+||||++.+++..++|++++++.||.|||.|.|.+.++ .+.|.|+|||++.
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~---d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~ 87 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPC---NSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF 87 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCC---CCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC
Confidence 46779999999999999987 6678999999999999999999999999999999999999875 5679999999997
Q ss_pred CCCCCccCCCCCCCCCeeEEEEEEcccccC-----CceEeeeEeeeecCCCCCccCcEEEEEEEE
Q 001696 687 LGGGEKQNGSSAVRDSRIGKVRIRLSTLEA-----HRIYTHSYPLLVLHPHGVKKMGELQLAIRF 746 (1026)
Q Consensus 687 ~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 746 (1026)
++ +|++||++.|+|.++.. ...+..|.+|. + +..|+|+|++.|
T Consensus 88 ~~-----------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~-----~-~~~g~i~l~~~~ 135 (136)
T cd08375 88 FS-----------PDDFLGRTEIRVADILKETKESKGPITKRLLLH-----E-VPTGEVVVKLDL 135 (136)
T ss_pred CC-----------CCCeeEEEEEEHHHhccccccCCCcEEEEeccc-----c-ccceeEEEEEEe
Confidence 65 78999999999999975 23445566653 2 335999999987
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-18 Score=159.79 Aligned_cols=107 Identities=21% Similarity=0.347 Sum_probs=90.4
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEeC-----C--ceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeC
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFL-----N--QLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHH 74 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~-----~--~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~ 74 (1026)
+|+|+|++|+||+..+ .|.+||||+|++. . ++++|+++.+|+||+|||+|.|.+.+.+......|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 5899999999998887 4899999999983 2 357899999999999999999999865444446799999996
Q ss_pred CCCCCCCCccceeEEecCccccccCCceeEEeeccccc
Q 001696 75 ERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKW 112 (1026)
Q Consensus 75 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 112 (1026)
|. .+++++||++.+||.++...+. ...|++|+++.
T Consensus 80 d~--~~~dd~IG~~~l~l~~~~~~~~-~~~w~~L~~~~ 114 (120)
T cd08395 80 CF--ARDDRLVGVTVLQLRDIAQAGS-CACWLPLGRRI 114 (120)
T ss_pred cc--cCCCCEEEEEEEEHHHCcCCCc-EEEEEECcCcc
Confidence 53 3578999999999999997775 78899998763
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.3e-18 Score=157.96 Aligned_cols=113 Identities=26% Similarity=0.466 Sum_probs=102.0
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeCC-CCEEEEEEEeCCCCCCCCc
Q 001696 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGGGEK 692 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~v~d~~~~~~~~~ 692 (1026)
|+|.|++|+||+.+ +..+.+||||++++++...+|++++++.||.|||.|.|.+..+ ...|.|+|||++.++
T Consensus 2 ~~V~v~~a~~L~~~---~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~---- 74 (116)
T cd08376 2 VTIVLVEGKNLPPM---DDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK---- 74 (116)
T ss_pred EEEEEEEEECCCCC---CCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCC----
Confidence 78999999999987 5578999999999999999999999999999999999999886 678999999999764
Q ss_pred cCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEEe
Q 001696 693 QNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFT 747 (1026)
Q Consensus 693 ~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 747 (1026)
++++||++.++|+++..+.....||+|.. ..|+|++++.|+
T Consensus 75 -------~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-------~~G~~~~~~~~~ 115 (116)
T cd08376 75 -------KDEFIGRCEIDLSALPREQTHSLELELED-------GEGSLLLLLTLT 115 (116)
T ss_pred -------CCCeEEEEEEeHHHCCCCCceEEEEEccC-------CCcEEEEEEEec
Confidence 79999999999999998888999999962 249999988764
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=158.27 Aligned_cols=119 Identities=24% Similarity=0.423 Sum_probs=101.5
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEE-EEeeeecCCCCceeecEEEEEeeCCC-CEEEEEEEeCCCCCC
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKW-VRTRTILDTFNPKWNEQYTWEVYDPC-TVITLGVFDNCHLGG 689 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~-~~T~~~~~t~~P~wne~~~~~v~~~~-~~l~i~v~d~~~~~~ 689 (1026)
..|+|.|++|+||++. +.+||||+|.+++.. .||++ +++.||.|||.|.|.+..+. ..|+|.|||++.++
T Consensus 4 ~~L~V~Vi~A~~L~~~------~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~- 75 (126)
T cd08400 4 RSLQLNVLEAHKLPVK------HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRS- 75 (126)
T ss_pred eEEEEEEEEeeCCCCC------CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCC-
Confidence 5799999999999863 378999999998754 78887 56899999999999976653 57999999998765
Q ss_pred CCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEEee
Q 001696 690 GEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTI 748 (1026)
Q Consensus 690 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 748 (1026)
+|++||++.|+|+++..+.....||+|......+.+..|+|+|+++|..
T Consensus 76 ----------~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 76 ----------KDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred ----------CCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 7999999999999999998889999998655444555799999999965
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=157.54 Aligned_cols=118 Identities=27% Similarity=0.486 Sum_probs=103.5
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCCC
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGE 691 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 691 (1026)
|.|+|.|++|+||+.+ +..+.+||||++.+++..++|++++++.||.|||.|.|.+.+....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~---~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~--- 74 (119)
T cd08377 1 GFLQVKVIRASGLAAA---DIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDK--- 74 (119)
T ss_pred CEEEEEEEeeeCCCCC---CCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCC---
Confidence 7899999999999987 5677899999999999999999999999999999999999877788999999998754
Q ss_pred ccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEE
Q 001696 692 KQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRF 746 (1026)
Q Consensus 692 ~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 746 (1026)
++++||++.++|.++..+. ..||+|......+ +..|+|.|++.|
T Consensus 75 --------~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~-~~~G~i~l~~~~ 118 (119)
T cd08377 75 --------KPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRT-RAKGSILLEMDV 118 (119)
T ss_pred --------CCceeeEEEEEHHHCCCCC--ceEEECcccCCCC-ceeeEEEEEEEe
Confidence 7899999999999998776 6899998543323 346999999876
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=7e-18 Score=161.02 Aligned_cols=121 Identities=23% Similarity=0.472 Sum_probs=103.0
Q ss_pred eEEEEeecCCCccCCCCCCCCCEEEEEeCC--ceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCCC
Q 001696 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLN--QLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIP 80 (1026)
Q Consensus 3 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~--~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~ 80 (1026)
|.|+|++|+||+. ..|.+||||++++++ .+++|+++.+|+||+|||+|.|.+.... ..|.|+|||++.. +
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~----~~l~~~v~d~~~~--~ 72 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNS----KELLFEVYDNGKK--S 72 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCC----CEEEEEEEECCCC--C
Confidence 6899999999976 778999999999974 6789999999999999999999986433 5899999996654 4
Q ss_pred CCccceeEEecCccccccCCceeEEeecccccc-ccccccccceeEEecCCCC
Q 001696 81 GRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWF-LSSVKGEVGLKIYISPQSE 132 (1026)
Q Consensus 81 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~-~~~~~G~l~l~~~~~~~~~ 132 (1026)
+++|||++.+++.++..... ...||+|+++.. .....|+|.+++.|.+.+.
T Consensus 73 ~~~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~~ 124 (126)
T cd08678 73 DSKFLGLAIVPFDELRKNPS-GRQIFPLQGRPYEGDSVSGSITVEFLFMEPAE 124 (126)
T ss_pred CCceEEEEEEeHHHhccCCc-eeEEEEecCCCCCCCCcceEEEEEEEEecccc
Confidence 79999999999999887654 678999987642 3578999999999987653
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-17 Score=156.76 Aligned_cols=120 Identities=24% Similarity=0.411 Sum_probs=106.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCcee
Q 001696 286 YLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-YKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYL 364 (1026)
Q Consensus 286 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~l 364 (1026)
+|+|+|++|++|+..+..|.+||||++.+++ ..++|+++.++.||.|||+|.|.+..+ ...|.|+|||++..+++++|
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcce
Confidence 3889999999999999889999999999988 578999999999999999999998765 47899999999999999999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecc
Q 001696 365 GRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGT 412 (1026)
Q Consensus 365 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 412 (1026)
|++.+++.++..+...+ .|++|.+..+ .+..|+|++.+.+.+
T Consensus 80 G~~~~~l~~l~~~~~~~-----~~~~L~~~~~-~~~~G~l~l~~~~~~ 121 (121)
T cd04042 80 GSAFVDLSTLELNKPTE-----VKLKLEDPNS-DEDLGYISLVVTLTP 121 (121)
T ss_pred EEEEEEHHHcCCCCCeE-----EEEECCCCCC-ccCceEEEEEEEECC
Confidence 99999999998776555 8999987654 357899999998753
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.4e-18 Score=164.26 Aligned_cols=107 Identities=28% Similarity=0.478 Sum_probs=88.7
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEeCC-----ceeeeccCCCCCCcccceeEEEecc------------CCCCCcc
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLN-----QLSKTKTIPKNLNPVWNQKLLFDFD------------QTKSHNH 64 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~------------~~~~~~~ 64 (1026)
+|.|+|++|+||+. .+|.+||||+|++.+ .+++|+++++|+||+|||+|.|.+. +.+....
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 58999999999987 568999999999965 6789999999999999999999985 2222234
Q ss_pred ceEEEEEeeCCCCCCCCCccceeEEecCccccccCCceeEEeeccccc
Q 001696 65 LRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKW 112 (1026)
Q Consensus 65 ~~L~~~V~d~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 112 (1026)
..|.|.|||++.. +.|+|||++.|+|..+.........||+|+++.
T Consensus 79 ~~L~i~V~d~~~~--~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~ 124 (148)
T cd04010 79 LELRVDLWHASMG--GGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEEcCCCC--CCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence 6799999995443 579999999999999887623468899998875
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.4e-18 Score=197.60 Aligned_cols=411 Identities=18% Similarity=0.193 Sum_probs=261.2
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCC---------
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERI--------- 343 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~--------- 343 (1026)
.+++.++-+ ....+++.|.+|+.|...+..+.+|||+.|.+-++.+.|.++.+|+||.|+++..|.-.+.
T Consensus 195 ~~Sc~~~e~-~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~ 273 (1105)
T KOG1326|consen 195 EFSCYLSEV-IHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLK 273 (1105)
T ss_pred ceEEecchh-hhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhc
Confidence 455554433 5678999999999999999999999999999999999999999999999999998862111
Q ss_pred CCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecccCchhhhhccc
Q 001696 344 QSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGTQADEAFAEAWH 423 (1026)
Q Consensus 344 ~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~d~~~~~~~~ 423 (1026)
.-..+.|+|||.+..+.++++|.+.....-... .+ ...|+++.... ...|++.++......+.. -+|.
T Consensus 274 ~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~-~p-----~lkw~p~~rg~---~l~gd~l~a~eliq~~~~---i~~p 341 (1105)
T KOG1326|consen 274 NPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ-CP-----ALKWVPTMRGA---FLDGDVLIAAELIQIGKP---IPQP 341 (1105)
T ss_pred CCCeEEEEeehhhhhchHHhhcccccceEEEec-CC-----ccceEEeeccc---ccccchhHHHHHHhhcCC---CCCC
Confidence 125788999999999999999998876554443 11 23899998754 356777666433332221 1121
Q ss_pred ccCccccCCCccccccccccCCceEEEEEEEEEeEecCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCCcccceeEEE
Q 001696 424 SDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFV 503 (1026)
Q Consensus 424 ~d~~~~~~~~~~~~r~~~~~~p~~~~l~V~I~~a~~L~~~d~~~~~dpyV~v~lg~~~~kT~~~~~~t~nP~wne~f~f~ 503 (1026)
.+.... .......+.-..-+.+.+.|-...-+|+..........|-+.+.+|++..++-.+...-.||.|+..|.+-
T Consensus 342 ~~~~~~---~~~~vp~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s~~I~~~k~npnf~s~~~~~ 418 (1105)
T KOG1326|consen 342 PPQREI---IFSLVPKKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGGERVSSFSIFNRKKNPNFPSRVLGR 418 (1105)
T ss_pred Cccccc---ceeccccCCCcceeeeeeehhhhhhcccccccccccCCcceeEeeCCceEeeeeehhhhhCCCCceeEEEE
Confidence 111100 00000001111223345555555666666555556678999999999999888886566789998776554
Q ss_pred e-eCC----CcCeEEEEEEEccCCCCCceeEEEEEe-CcccccccCC----C-C-------------------ccceeEE
Q 001696 504 A-AEP----FEEQLFLTVEDRVHASKDEVLGKISLP-LHIFEKRLDH----R-P-------------------VHSRWFN 553 (1026)
Q Consensus 504 v-~~~----~~~~L~i~V~d~d~~~~d~~lG~~~i~-l~~l~~~~~~----~-~-------------------~~~~w~~ 553 (1026)
. .-+ ....+.++|.|.+.++.-..+|.|.|. +..+..+... . + ....|++
T Consensus 419 ~v~lpd~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~~~~~~~~~~~~~~~l~ 498 (1105)
T KOG1326|consen 419 LVILPDEELYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMMGSTDNEIRHCNSSTLP 498 (1105)
T ss_pred EEeccchHhhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhcCCchhhhhhccccCCC
Confidence 3 222 345899999999999999999999876 2222211000 0 0 0001111
Q ss_pred cccCCCCch--------------hhhhhccccccceEEEEEEec----------------------CCc--cccCCcc--
Q 001696 554 LEKFGFGAI--------------EADRRKELKFSSRVHLRVCLE----------------------GGY--HVLDEST-- 593 (1026)
Q Consensus 554 L~~~~~~~~--------------~~~~~~~~~~~g~l~l~~~~~----------------------~~~--~~~~~~~-- 593 (1026)
......... ..++...........+.++-. |.. ...++..
T Consensus 499 ~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~D~~~~f~l~rG~~~~e~~e~~Ivg 578 (1105)
T KOG1326|consen 499 ASPHEDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQDWAVTFKLYRGKEGLECLEQQIVG 578 (1105)
T ss_pred CCccccccceehhhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhhhccceeEeeeccccCCCcccchhh
Confidence 111100000 000000011112234444410 000 0000000
Q ss_pred ---------ccc----CCccccccccC---CCCceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEE--EEeeeec
Q 001696 594 ---------MYI----SDQRPTAKQLW---KPPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKW--VRTRTIL 655 (1026)
Q Consensus 594 ---------~~~----~d~~~~~~~~~---~~~~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~--~~T~~~~ 655 (1026)
+.. ....|...+.+ .+-.-.++|.|++|-+|.+. |++|++|||+++.+|++. -++..+.
T Consensus 579 ~fKgl~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~---D~ng~adpYv~l~lGk~~~~d~~~yip 655 (1105)
T KOG1326|consen 579 EFKGLFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPS---DGNGDADPYVKLLLGKKRTLDRAHYIP 655 (1105)
T ss_pred hhhcceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeecccc---CCCCCcCceeeeeeccchhhhhhhcCc
Confidence 000 00000000001 12335688999999999987 889999999999999988 6677778
Q ss_pred CCCCceeecEEEEEeeCC-CCEEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEccc
Q 001696 656 DTFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLST 713 (1026)
Q Consensus 656 ~t~~P~wne~~~~~v~~~-~~~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~ 713 (1026)
+|+||+|++.|++....| ...++|+|||+|..+ .|+.||...|+|..
T Consensus 656 ~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~-----------~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 656 NTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA-----------QDEKIGETTIDLEN 703 (1105)
T ss_pred CCCCcHHHHHHHhhcccchhhcceeEEEEeeccc-----------ccchhhceehhhhh
Confidence 999999999999999998 446999999999865 79999999999876
|
|
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=157.69 Aligned_cols=100 Identities=26% Similarity=0.355 Sum_probs=89.3
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-----CEEEEeeeecCCCCceeecEEEEEee---C-CCCEEEEEEE
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG-----QKWVRTRTILDTFNPKWNEQYTWEVY---D-PCTVITLGVF 682 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g-----~~~~~T~~~~~t~~P~wne~~~~~v~---~-~~~~l~i~v~ 682 (1026)
|.|.|.|++|+||+++ + .+.+||||+|++. ..+.||++++++.||.|||+|.|++. + ....|.|+||
T Consensus 13 ~~L~V~Vi~A~~L~~~---~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~ 88 (122)
T cd08381 13 GTLFVMVMHAKNLPLL---D-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVW 88 (122)
T ss_pred CEEEEEEEEeeCCCCC---C-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEE
Confidence 6899999999999987 6 7899999999995 34699999999999999999999982 2 3568999999
Q ss_pred eCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEee
Q 001696 683 DNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPL 726 (1026)
Q Consensus 683 d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L 726 (1026)
|++.++ ++++||.+.|+|+++..+.....||+|
T Consensus 89 d~d~~~-----------~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 89 SHDSLV-----------ENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred eCCCCc-----------CCcEEEEEEEeccccccCCCccceEEC
Confidence 999865 799999999999999988878999997
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-17 Score=157.62 Aligned_cols=119 Identities=22% Similarity=0.356 Sum_probs=102.3
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEEC--CEEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCCC
Q 001696 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG--QKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGE 691 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g--~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 691 (1026)
|.|.|++|+||+. ..|.+||||++.++ .+++||++++++.||.|||.|.|.+......|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~-----~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~--- 72 (126)
T cd08678 1 LLVKNIKANGLSE-----AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKS--- 72 (126)
T ss_pred CEEEEEEecCCCC-----CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCC---
Confidence 5699999999985 35799999999997 4679999999999999999999999766778999999999864
Q ss_pred ccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEEee
Q 001696 692 KQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTI 748 (1026)
Q Consensus 692 ~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 748 (1026)
++++||++.|+|+++..+.....||+|......+.+..|+|++++.|..
T Consensus 73 --------~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 73 --------DSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred --------CCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 7999999999999998877778999998543333445799999999964
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-17 Score=159.78 Aligned_cols=116 Identities=22% Similarity=0.297 Sum_probs=99.7
Q ss_pred ccc-eeEeeeccccceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecC
Q 001696 270 SGE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSS-ITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKER 342 (1026)
Q Consensus 270 ~g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~ 342 (1026)
+|+ ++++.|. .+.|.|+|++|+||++.+ ..|.+||||++++.+ .++||+++++|+||+|||+|.|.+.
T Consensus 17 ~G~l~lsl~y~----~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~- 91 (146)
T cd04028 17 MGDIQLGLYDK----KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS- 91 (146)
T ss_pred cceEEEEEEeC----CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-
Confidence 466 8899984 489999999999998874 568899999999954 2679999999999999999999997
Q ss_pred CCCCeEEEEEE-eCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCC
Q 001696 343 IQSSMLEVFLK-DKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRR 395 (1026)
Q Consensus 343 ~~~~~L~v~V~-d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 395 (1026)
+.+..|.|+|| |++.++++++||++.|+|+++....... .||+|.+..
T Consensus 92 l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~-----~Wy~L~~~~ 140 (146)
T cd04028 92 PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVI-----GWYKLFPTS 140 (146)
T ss_pred CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCce-----eEEecCCcc
Confidence 66789999999 5788889999999999999986654433 899999764
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-17 Score=157.57 Aligned_cols=118 Identities=25% Similarity=0.404 Sum_probs=100.0
Q ss_pred cc-eeEeeeccccceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecC-
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSIT-GSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKER- 342 (1026)
Q Consensus 271 g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~- 342 (1026)
|+ ++++.|+. ..+.|.|+|++|+||++++.. |.+||||++++.+ .++||++++++.||+|||+|.|.+..
T Consensus 2 G~i~~sl~Y~~--~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~ 79 (128)
T cd08392 2 GEIEFALHYNF--RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEAD 79 (128)
T ss_pred cEEEEEEEEeC--CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHH
Confidence 45 89999987 458999999999999998875 8999999999963 36799999999999999999999743
Q ss_pred -CCCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEee
Q 001696 343 -IQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLE 392 (1026)
Q Consensus 343 -~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 392 (1026)
+....|.|.|||.+.++++++||++.|+|.++...... +..+.||+|.
T Consensus 80 ~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~--~~~~~W~~l~ 128 (128)
T cd08392 80 LLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTD--SQRFLWYPLN 128 (128)
T ss_pred HhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCC--ccccceEECc
Confidence 34579999999999999999999999999999655321 2345899873
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-17 Score=158.29 Aligned_cols=115 Identities=28% Similarity=0.532 Sum_probs=99.2
Q ss_pred cc-eeEeeeccccceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEec--
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSIT-GSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKE-- 341 (1026)
Q Consensus 271 g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~-- 341 (1026)
|+ ++++.|+. ..+.|.|+|++|+||++++.. |.+||||+|++.+ .+++|++++++.||+|||+|.|.+.
T Consensus 2 G~i~~sl~y~~--~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~ 79 (125)
T cd08393 2 GSVQFALDYDP--KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVERE 79 (125)
T ss_pred cEEEEEEEEEC--CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHH
Confidence 45 88999987 458999999999999999875 8899999999953 3579999999999999999999985
Q ss_pred CCCCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEee
Q 001696 342 RIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLE 392 (1026)
Q Consensus 342 ~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 392 (1026)
+.....|.|+|||++.++++++||++.++|.++...... ..||+|+
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~-----~~W~~L~ 125 (125)
T cd08393 80 ELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQ-----PTWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCC-----cceEECc
Confidence 345679999999999999999999999999999766433 3899874
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=158.31 Aligned_cols=118 Identities=20% Similarity=0.329 Sum_probs=101.3
Q ss_pred eEEEEeecCCCccCCCCCCCCCEEEEEeCCc-eeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCCCC
Q 001696 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLNQ-LSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIPG 81 (1026)
Q Consensus 3 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~ 81 (1026)
|.|+|++|++|++.+..|.+||||+|.+++. ..+|+++++|+||+|||.|.|.+.... ..|.|+|||++.. +.
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~----~~l~v~v~d~~~~--~~ 75 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGF----HTVSFYVLDEDTL--SR 75 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCC----CEEEEEEEECCCC--CC
Confidence 8999999999999999999999999999765 479999999999999999999987543 5899999995543 57
Q ss_pred CccceeEEecCccccccCCceeEEeeccccccccccccccceeEE
Q 001696 82 RHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIY 126 (1026)
Q Consensus 82 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 126 (1026)
|++||++.++++++...+.....|++|++........|+|++.++
T Consensus 76 d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 76 DDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 999999999998887544447789999987666678999998875
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-17 Score=158.71 Aligned_cols=121 Identities=25% Similarity=0.437 Sum_probs=103.3
Q ss_pred eEEEEEEEEecCCCCCccCCC--CCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeC-CCCEEEEEEEeCCCCC
Q 001696 612 GILEVGILGAQGLLPMKMKDG--RGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYD-PCTVITLGVFDNCHLG 688 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~--~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~-~~~~l~i~v~d~~~~~ 688 (1026)
|.|+|.|++|+||+.. +. .+.+||||++.+++..++|++++++.||.|||.|.|.+.+ ....|.|+|||++.++
T Consensus 1 g~l~v~v~~a~~L~~~---~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAK---DRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcc---cCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 7899999999999987 44 7899999999999999999999999999999999999997 4778999999999764
Q ss_pred CCCccCCCCCCCCCeeEEEEEEccccc---CCceEeeeEeeeecCCC-CCccCcEEEEEEEE
Q 001696 689 GGEKQNGSSAVRDSRIGKVRIRLSTLE---AHRIYTHSYPLLVLHPH-GVKKMGELQLAIRF 746 (1026)
Q Consensus 689 ~~~~~~~~~~~~~~~lG~~~i~l~~l~---~~~~~~~~~~L~~~~~~-g~~~~G~i~l~~~f 746 (1026)
++++||++.|+|.++. .......||+|...... .....|+|+|++.|
T Consensus 78 -----------~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 -----------GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred -----------CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 7899999999999986 33446899999865322 23347999998753
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.5e-18 Score=158.87 Aligned_cols=96 Identities=32% Similarity=0.554 Sum_probs=90.4
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCc
Q 001696 283 QMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDD 362 (1026)
Q Consensus 283 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 362 (1026)
..|.|+|+|++|.||..+|..+++||||.+.+++++.||+++++++||+|||.|.|.+.++ ...|.++|||+|.+++||
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~dD 82 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSSDD 82 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCccc
Confidence 4589999999999999999889999999999999999999999999999999999999988 479999999999999999
Q ss_pred eeEEEEEEccccCCCCC
Q 001696 363 YLGRVAFDLNEVPTRVP 379 (1026)
Q Consensus 363 ~lG~~~i~l~~l~~~~~ 379 (1026)
+||.++|+|..+.....
T Consensus 83 ~mG~A~I~l~p~~~~~~ 99 (168)
T KOG1030|consen 83 FMGEATIPLKPLLEAQK 99 (168)
T ss_pred ccceeeeccHHHHHHhh
Confidence 99999999999987643
|
|
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-17 Score=157.49 Aligned_cols=123 Identities=24% Similarity=0.494 Sum_probs=105.1
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCc
Q 001696 283 QMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDD 362 (1026)
Q Consensus 283 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 362 (1026)
..|.|+|+|++|++|+..+..|.+||||++.++++.++|++++++.||.|||+|.|.+.++....|.|+|||++.+++|+
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~ 92 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDD 92 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCC
Confidence 45899999999999999998999999999999999999999999999999999999998776789999999999999999
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEe
Q 001696 363 YLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWM 410 (1026)
Q Consensus 363 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 410 (1026)
+||++.+++.++.............|..+.. ...|+|++++.+
T Consensus 93 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~-----~~~g~i~l~~~~ 135 (136)
T cd08375 93 FLGRTEIRVADILKETKESKGPITKRLLLHE-----VPTGEVVVKLDL 135 (136)
T ss_pred eeEEEEEEHHHhccccccCCCcEEEEecccc-----ccceeEEEEEEe
Confidence 9999999999998633222223335666642 456999998865
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=159.66 Aligned_cols=117 Identities=35% Similarity=0.559 Sum_probs=101.5
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEeCCceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCC---
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRP--- 78 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~--- 78 (1026)
+|+|+|++|++|+..|..|.+||||+|++++..++|+++.+++||+|||+|.|.+.... ..|.|+|||+|...
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~----~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSS----DRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCC----CEEEEEEEECCCCcccc
Confidence 58999999999999998899999999999888999999999999999999999986543 58999999976421
Q ss_pred ------CCCCccceeEEecCccccccCCceeEEeeccccccccccccccceeE
Q 001696 79 ------IPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKI 125 (1026)
Q Consensus 79 ------~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~ 125 (1026)
.+.+++||++.+++.++.. ....||.|++++..+.++|+|++++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~---~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSG---EMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccC---CCCeEEECccCCCCCcEeEEEEEEC
Confidence 1368999999999988753 2579999999887788999999874
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.9e-17 Score=153.08 Aligned_cols=114 Identities=32% Similarity=0.550 Sum_probs=102.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCceeE
Q 001696 286 YLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLG 365 (1026)
Q Consensus 286 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG 365 (1026)
+|+|+|++|++|+..+..+.+||||++++++++.+|++++++.||.|||+|.|.+.+.....|.|+|||++.++++++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 37899999999999998899999999999999999999999999999999999987766789999999999998999999
Q ss_pred EEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEe
Q 001696 366 RVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWM 410 (1026)
Q Consensus 366 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 410 (1026)
++.+++.++..+...+ .|++|.+. .|+|++.+.|
T Consensus 81 ~~~~~l~~l~~~~~~~-----~w~~L~~~------~G~~~~~~~~ 114 (116)
T cd08376 81 RCEIDLSALPREQTHS-----LELELEDG------EGSLLLLLTL 114 (116)
T ss_pred EEEEeHHHCCCCCceE-----EEEEccCC------CcEEEEEEEe
Confidence 9999999988765444 89999864 3889887765
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-17 Score=155.77 Aligned_cols=117 Identities=25% Similarity=0.427 Sum_probs=101.6
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecC-CCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCce
Q 001696 285 SYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEK-RMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDY 363 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 363 (1026)
|.|+|+|++|++|+..+..+.+||||+|.+++.+.+|+++.+ +.||.|||+|.|.+.......|.|+|||++..+ +++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 479999999999999998899999999999999999998754 789999999999997765678999999998875 999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEe
Q 001696 364 LGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWM 410 (1026)
Q Consensus 364 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 410 (1026)
||++.+++.++..+... ..||+|.... +..|+|++++.|
T Consensus 80 iG~~~~~l~~~~~~~~~-----~~w~~L~~~~---~~~G~i~l~l~f 118 (118)
T cd08681 80 IGDTEVDLSPALKEGEF-----DDWYELTLKG---RYAGEVYLELTF 118 (118)
T ss_pred eEEEEEecHHHhhcCCC-----CCcEEeccCC---cEeeEEEEEEEC
Confidence 99999999998765433 3899998642 578999998865
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-17 Score=155.60 Aligned_cols=115 Identities=23% Similarity=0.382 Sum_probs=99.2
Q ss_pred cc-eeEeeeccccceeEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecC-
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSI-TGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKER- 342 (1026)
Q Consensus 271 g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~- 342 (1026)
|+ ++++.|+. ..+.|.|+|++|+||++.+. .|.+||||+|++.+ .++||++++++.||+|||+|.|.+..
T Consensus 2 G~i~~sl~y~~--~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 79 (125)
T cd04029 2 GEILFSLSYDY--KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHS 79 (125)
T ss_pred cEEEEEEEEEC--CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHH
Confidence 45 88999976 56899999999999998765 47899999999953 35799999999999999999999854
Q ss_pred -CCCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEee
Q 001696 343 -IQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLE 392 (1026)
Q Consensus 343 -~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 392 (1026)
.....|.|+|||++.++++++||++.++|.++......+ .||+|.
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~-----~w~~l~ 125 (125)
T cd04029 80 QLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHE-----ECLPLH 125 (125)
T ss_pred HhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcc-----cEEECc
Confidence 345789999999999999999999999999998776544 899984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=5e-17 Score=156.36 Aligned_cols=104 Identities=21% Similarity=0.351 Sum_probs=90.3
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CC---EEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEE-eCC
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKY--GQ---KWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVF-DNC 685 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--g~---~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~-d~~ 685 (1026)
|.|.|.|++|+||++++ +..|.+||||++++ ++ .+.||+++++++||+|||.|.|.+......|.|+|| |++
T Consensus 29 ~~L~V~Vi~ArnL~~~~--~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~ 106 (146)
T cd04028 29 GQLEVEVIRARGLVQKP--GSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYG 106 (146)
T ss_pred CEEEEEEEEeeCCCccc--CCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCC
Confidence 78999999999998762 24678999999998 32 378999999999999999999999966778999999 566
Q ss_pred CCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeee
Q 001696 686 HLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLV 728 (1026)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 728 (1026)
.++ ++++||.+.|+|+++..+.....||+|..
T Consensus 107 ~~~-----------~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~ 138 (146)
T cd04028 107 RMD-----------KKVFMGVAQILLDDLDLSNLVIGWYKLFP 138 (146)
T ss_pred CCC-----------CCceEEEEEEEcccccCCCCceeEEecCC
Confidence 543 78999999999999988877899999974
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-17 Score=149.36 Aligned_cols=101 Identities=19% Similarity=0.236 Sum_probs=85.9
Q ss_pred CCceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC----EEEEeeeecCCCCceeecEEEEEeeC---CCCEEEEEE
Q 001696 609 PPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ----KWVRTRTILDTFNPKWNEQYTWEVYD---PCTVITLGV 681 (1026)
Q Consensus 609 ~~~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~----~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~v 681 (1026)
+..|.|.|.|++|+||+ + + |.+||||++.+.. .+.+|+++++|+||+|||+|.|.|.. +...|.|.|
T Consensus 11 ~~~~~L~V~vikA~~L~-~---~--g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V 84 (118)
T cd08677 11 KQKAELHVNILEAENIS-V---D--AGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTL 84 (118)
T ss_pred CcCCEEEEEEEEecCCC-C---C--CCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEE
Confidence 34489999999999998 3 3 4599999999853 57899999999999999999999974 356799999
Q ss_pred EeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEee
Q 001696 682 FDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPL 726 (1026)
Q Consensus 682 ~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L 726 (1026)
||+|+++ ++++||++.++++++..+...++|..|
T Consensus 85 ~d~Drfs-----------~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 85 RCCDRFS-----------RHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EeCCCCC-----------CCceEEEEEEccccccCCccccchhcC
Confidence 9999986 899999999999988666555788654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.8e-17 Score=154.33 Aligned_cols=104 Identities=20% Similarity=0.289 Sum_probs=90.3
Q ss_pred ceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-----CEEEEeeeecCCCCceeecEEEEEeeC---CCCEEEEEEE
Q 001696 611 VGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG-----QKWVRTRTILDTFNPKWNEQYTWEVYD---PCTVITLGVF 682 (1026)
Q Consensus 611 ~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g-----~~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~v~ 682 (1026)
.|.|.|.|++|+||++++ ...|.+||||+|++. ..+.||++++++.||.|||+|.|.+.. ....|.|+||
T Consensus 14 ~~~L~V~Vi~a~~L~~~~--~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~ 91 (125)
T cd04029 14 TQSLNVHVKECRNLAYGD--EAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVW 91 (125)
T ss_pred CCeEEEEEEEecCCCccC--CCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 378999999999999863 235789999999883 235899999999999999999999975 3557999999
Q ss_pred eCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeee
Q 001696 683 DNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 683 d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 727 (1026)
|++.++ ++++||.+.|+|.++........||||.
T Consensus 92 d~~~~~-----------~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 92 HYDRFG-----------RNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred ECCCCC-----------CCcEEEEEEEeCCcccccCCcccEEECc
Confidence 999865 7899999999999999888899999983
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-17 Score=155.69 Aligned_cols=101 Identities=28% Similarity=0.414 Sum_probs=88.9
Q ss_pred eEEEEEEEEecCCCCCccCCCC-CCcCcEEEEEEC-----CEEEEeeeecCCCCceeecEEEEEeeC---CCCEEEEEEE
Q 001696 612 GILEVGILGAQGLLPMKMKDGR-GSTDAYCIAKYG-----QKWVRTRTILDTFNPKWNEQYTWEVYD---PCTVITLGVF 682 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~-~~~dpyv~v~~g-----~~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~v~ 682 (1026)
+.|.|.|++|+||+++ +.. |.+||||++++. ..+.||+++++++||+|||.|.|.+.. ....|.|+||
T Consensus 15 ~~L~V~vi~a~~L~~~---d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~ 91 (125)
T cd08393 15 RELHVHVIQCQDLAAA---DPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVW 91 (125)
T ss_pred CEEEEEEEEeCCCCCc---CCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 7899999999999997 554 789999999983 235899999999999999999999864 2458999999
Q ss_pred eCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEee
Q 001696 683 DNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPL 726 (1026)
Q Consensus 683 d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L 726 (1026)
|++.++ ++++||.+.|+|.++..+.....||+|
T Consensus 92 d~~~~~-----------~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 92 HRDSLG-----------RNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred eCCCCC-----------CCcEeEEEEEecCccccCCCCcceEEC
Confidence 999865 789999999999999888777899997
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-17 Score=151.83 Aligned_cols=103 Identities=23% Similarity=0.384 Sum_probs=90.8
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEeCCceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCCCC
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIPG 81 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~ 81 (1026)
.|.|+|++|+||+..+..+.+||||+|++++++++|+++.+|.||+|||+|.|.+.++.. +.|.|+|||++.
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~---~~l~v~v~d~~~----- 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPEN---QELEIEVKDDKT----- 72 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCC---CEEEEEEEECCC-----
Confidence 489999999999999888999999999999999999999999999999999999987643 689999999332
Q ss_pred CccceeEEecCccccccC-CceeEEeeccccc
Q 001696 82 RHFLGRVRIPCSNLVRKG-EEVYQRFPLEKKW 112 (1026)
Q Consensus 82 d~~lG~~~i~l~~l~~~~-~~~~~w~~L~~~~ 112 (1026)
+++||++.++|.++.... .....||+|++++
T Consensus 73 ~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~g 104 (105)
T cd04050 73 GKSLGSLTLPLSELLKEPDLTLDQPFPLDNSG 104 (105)
T ss_pred CCccEEEEEEHHHhhccccceeeeeEecCCCC
Confidence 789999999999987654 3478999998754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.5e-17 Score=156.27 Aligned_cols=118 Identities=30% Similarity=0.447 Sum_probs=100.5
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-------EEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCC
Q 001696 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQK-------WVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCH 686 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~-------~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~ 686 (1026)
|+|+|++|+||+.+ +..|.+||||++.+++. .++|++++++.||.|||.|.|.+......|.|+|||++.
T Consensus 2 L~v~Vi~a~~L~~~---d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~ 78 (133)
T cd04033 2 LRVKVLAGIDLAKK---DIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENR 78 (133)
T ss_pred EEEEEEEeECCCcc---cCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCC
Confidence 78999999999987 66789999999999654 579999999999999999999997767789999999998
Q ss_pred CCCCCccCCCCCCCCCeeEEEEEEcccccCCc------eEeeeEeeeecCCCCCccCcEEEEEEEE
Q 001696 687 LGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHR------IYTHSYPLLVLHPHGVKKMGELQLAIRF 746 (1026)
Q Consensus 687 ~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~------~~~~~~~L~~~~~~g~~~~G~i~l~~~f 746 (1026)
++ ++++||++.|+++++..+. ....||+|......+ +..|+|+|++.|
T Consensus 79 ~~-----------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~G~l~~~~~~ 132 (133)
T cd04033 79 LT-----------RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS-RVKGHLRLYMAY 132 (133)
T ss_pred CC-----------CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCC-cceeEEEEEEee
Confidence 65 7899999999999987653 246999998544333 346999999987
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.1e-17 Score=154.59 Aligned_cols=119 Identities=24% Similarity=0.416 Sum_probs=101.4
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeCC-CCEEEEEEEeCCCCCCCC
Q 001696 613 ILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGGGE 691 (1026)
Q Consensus 613 ~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~v~d~~~~~~~~ 691 (1026)
+|+|+|++|++|+.+ +..+.+||||+|.+++..++|++++++.||.|||.|.|.+... ...|.|+|||++.++
T Consensus 1 ~L~v~vi~a~~L~~~---d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~--- 74 (123)
T cd04025 1 RLRCHVLEARDLAPK---DRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVS--- 74 (123)
T ss_pred CEEEEEEEeeCCCCC---CCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCC---
Confidence 489999999999987 5567899999999999999999999999999999999999876 567999999998765
Q ss_pred ccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCC---CCccCcEEEEEEE
Q 001696 692 KQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPH---GVKKMGELQLAIR 745 (1026)
Q Consensus 692 ~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~---g~~~~G~i~l~~~ 745 (1026)
++++||.+.++|+++..+.....||.|...... ..+..|.|++.++
T Consensus 75 --------~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 75 --------KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred --------CCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 789999999999999877667899999854322 1233688888763
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.1e-17 Score=185.29 Aligned_cols=183 Identities=22% Similarity=0.333 Sum_probs=151.3
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHhhccccccCchhHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHhhcccc-CCCCCC
Q 001696 818 RRSKANFFRVMSLLSGMISVSRWFTDICNWRNPVTAVLVHILFLILIWYPEL--ILPTVFLYMFLIGLWNYRF-RPRHPP 894 (1026)
Q Consensus 818 ~~~~~n~~Rl~~~~~~~~~~~~~i~~~~~W~~p~~s~~~~~~~~~~~~~p~l--~lp~~~l~l~~~~~~~~~~-~~~~p~ 894 (1026)
.-+-+|+.-|++++.|+..+..+++.+.+|++|.+|+.+++++.+++|..|+ ++|.++++++++|+|..+. +.+
T Consensus 483 eGI~tNvav~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g--- 559 (683)
T PF04842_consen 483 EGIDTNVAVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQGRLG--- 559 (683)
T ss_pred cCCccHHHHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC---
Confidence 3445799999999999999999999999999999999999999999999987 7999999999999997665 322
Q ss_pred CCCCCccccccCCCCCCCcccCCCCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHhhhHhHhhhccccCchhHHHHHHHH
Q 001696 895 HMDTKLSWAEAVHPDELDEEFDTFPTSKTHDIVRIRYDRLRSVAGRIQTVVGDIATQGERFQSLLSWRDPRATALFILFS 974 (1026)
Q Consensus 895 ~~~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~~~~r~~~l~~~~~~vQ~~l~~~a~~le~~~~l~~w~~p~~t~~~~~~l 974 (1026)
...++.. ....++.+..+++-++|+.+.++++.|+.++.+|.|+|+++.|..|++|..+++++
T Consensus 560 ---------------~~~~~v~--V~~pP~~nTvEqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~L 622 (683)
T PF04842_consen 560 ---------------KSFGEVT--VRDPPPKNTVEQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALAL 622 (683)
T ss_pred ---------------CccceEE--ecCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 1122222 34456678888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHhhhhh-cCCCCCCCCCC----chhhhhhcCCC
Q 001696 975 LCAAMVLYTTPFKVVALLAGLYYL-RHPRFRSKLPS----VPSNFFKRMPA 1020 (1026)
Q Consensus 975 ~~~~i~l~~iP~r~i~l~~g~~~~-r~P~~~~~~p~----~~~~~~~r~P~ 1020 (1026)
+++|+++.|+|+||++++..+..+ |+=.||+.+-. .+-.+|-++|.
T Consensus 623 l~~A~~LavvP~kyil~~v~l~~FTre~~~Rr~s~er~~RRlrEWW~sIPA 673 (683)
T PF04842_consen 623 LGLAAVLAVVPFKYILLFVFLEVFTRESPFRRESSERFNRRLREWWDSIPA 673 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhCCc
Confidence 999999999999999999888822 22224433221 35566667774
|
|
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-17 Score=156.04 Aligned_cols=119 Identities=25% Similarity=0.357 Sum_probs=100.4
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEeC-CceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCCC
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFL-NQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIP 80 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~-~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~ 80 (1026)
.|+|+|++|++|+..+..|.+||||+++++ .+.++|+++++++||.|||+|.|.+.. . ..|.|+|||++.....
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~----~~l~i~V~d~~~~~~~ 75 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-S----SIITIQVFDQKKFKKK 75 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-C----CEEEEEEEECCCCCCC
Confidence 489999999999999988999999999996 678999999999999999999999865 2 6999999995553211
Q ss_pred CCccceeEEecCccccccCCceeEEeecccccc--ccccccccceeE
Q 001696 81 GRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWF--LSSVKGEVGLKI 125 (1026)
Q Consensus 81 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~--~~~~~G~l~l~~ 125 (1026)
.|+|||++.+++.++.........||+|++... .+.+.|+|.+++
T Consensus 76 ~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 76 DQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 268999999999999866554578999977653 567789998875
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.6e-17 Score=154.56 Aligned_cols=114 Identities=24% Similarity=0.371 Sum_probs=97.6
Q ss_pred eEEEEeecCCCccCCCCCCCCCEEEEEeC---CceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCC
Q 001696 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFL---NQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPI 79 (1026)
Q Consensus 3 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~---~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~ 79 (1026)
|+|+|++|++|+..+..+.+||||+|++. ..+++|++++++.||+|||+|.|.+.... ...|.|+|||++. .
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~---~~~l~v~v~d~d~--~ 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQV---KNVLELTVMDEDY--V 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCccc---CCEEEEEEEECCC--C
Confidence 78999999999988888999999999995 36789999999999999999999987653 2579999999554 2
Q ss_pred CCCccceeEEecCccccccCCceeEEeeccccccccccccccceeEEec
Q 001696 80 PGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYIS 128 (1026)
Q Consensus 80 ~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 128 (1026)
++++||++.+++.++.... ....||+|.+.+ .|+|++++.+.
T Consensus 77 -~~~~iG~~~~~l~~l~~g~-~~~~~~~L~~~~-----~g~l~~~~~~~ 118 (119)
T cd04036 77 -MDDHLGTVLFDVSKLKLGE-KVRVTFSLNPQG-----KEELEVEFLLE 118 (119)
T ss_pred -CCcccEEEEEEHHHCCCCC-cEEEEEECCCCC-----CceEEEEEEee
Confidence 7899999999999987654 488899998753 78999888753
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=154.67 Aligned_cols=123 Identities=32% Similarity=0.517 Sum_probs=106.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------eeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCC
Q 001696 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNY-------KGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVG 359 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-------~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~ 359 (1026)
|+|+|++|++|+..+..|.+||||+|.+.+. +.+|++++++.||.|||+|.|.+... ...|.|+|||++.++
T Consensus 2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~~ 80 (133)
T cd04033 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRLT 80 (133)
T ss_pred EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCCC
Confidence 7899999999999998889999999999764 47899999999999999999998654 468999999999999
Q ss_pred CCceeEEEEEEccccCCCCCCC-CCCCCEEEEeecCCCCCcccceEEEEEEe
Q 001696 360 RDDYLGRVAFDLNEVPTRVPPD-SPLAPQWYRLEDRRGEGKVRGQTMLAIWM 410 (1026)
Q Consensus 360 ~d~~lG~~~i~l~~l~~~~~~~-~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 410 (1026)
++++||++.+++.++....+.+ ......||+|+.....++..|+|++++.|
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 9999999999999998764432 23456999999876556789999999876
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-16 Score=151.58 Aligned_cols=117 Identities=32% Similarity=0.497 Sum_probs=100.2
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEE-EEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCCCc
Q 001696 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKW-VRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEK 692 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~-~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~ 692 (1026)
|.|.|++|++|+++ +..|.+||||++++++.. .||++++++.||.|||.|.|.+......|.|.|||++.++
T Consensus 2 l~v~vi~a~~L~~~---d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~---- 74 (121)
T cd04054 2 LYIRIVEGKNLPAK---DITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLS---- 74 (121)
T ss_pred EEEEEEEeeCCcCC---CCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCC----
Confidence 78999999999987 667899999999998764 7999999999999999999999877789999999999865
Q ss_pred cCCCCCCCCCeeEEEEEEcccccCC-ceEeeeEeeeecCCCCCccCcEEEEEEE
Q 001696 693 QNGSSAVRDSRIGKVRIRLSTLEAH-RIYTHSYPLLVLHPHGVKKMGELQLAIR 745 (1026)
Q Consensus 693 ~~~~~~~~~~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 745 (1026)
+|++||++.+++.++..+ .....|++|...+..+. ..|+|+|.++
T Consensus 75 -------~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~-~~G~i~l~~~ 120 (121)
T cd04054 75 -------RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEE-VQGEIHLELS 120 (121)
T ss_pred -------CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCc-cccEEEEEEE
Confidence 799999999999998754 34689999986544332 4699988764
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.5e-17 Score=154.13 Aligned_cols=119 Identities=18% Similarity=0.324 Sum_probs=101.9
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEeCCceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCCCC
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIPG 81 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~ 81 (1026)
.|+|+|++|++|...+..|.+||||++.++++.++|+++++|.||+|||.|.|.+.+.. ..|.|+|||++. . +
T Consensus 4 ~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~----~~l~i~V~d~~~-~--~ 76 (126)
T cd04046 4 VTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPR----SPIKIQVWNSNL-L--C 76 (126)
T ss_pred EEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCC----CEEEEEEEECCC-C--C
Confidence 58999999999999888899999999999999999999999999999999999887653 689999999543 2 5
Q ss_pred CccceeEEecCccccccCCceeEEeeccccc--cccccccccceeEEecCC
Q 001696 82 RHFLGRVRIPCSNLVRKGEEVYQRFPLEKKW--FLSSVKGEVGLKIYISPQ 130 (1026)
Q Consensus 82 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~--~~~~~~G~l~l~~~~~~~ 130 (1026)
|+|||++.+++.++.. ....||+|+.+. ..+++.|+|.+++++.+.
T Consensus 77 d~~lG~~~~~l~~~~~---~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 77 DEFLGQATLSADPNDS---QTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred CCceEEEEEecccCCC---cCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 8999999999987542 356788996543 667899999999988754
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-16 Score=150.84 Aligned_cols=121 Identities=21% Similarity=0.300 Sum_probs=101.7
Q ss_pred ceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCC
Q 001696 611 VGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGG 690 (1026)
Q Consensus 611 ~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 690 (1026)
.+.|+|+|++|++|... +..|.+||||++.++++.++|++++++.||.|||.|.|.+.++...|.|+|||++.+
T Consensus 2 ~~~~~V~v~~A~~L~~~---d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~--- 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQ---DSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL--- 75 (126)
T ss_pred cEEEEEEEEeCcCCCCC---CCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC---
Confidence 36899999999999986 667899999999999999999999999999999999999988888999999998864
Q ss_pred CccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecC-CCCCccCcEEEEEEEEee
Q 001696 691 EKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLH-PHGVKKMGELQLAIRFTI 748 (1026)
Q Consensus 691 ~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-~~g~~~~G~i~l~~~f~~ 748 (1026)
.|++||.+.+++.++..+. .+||+|.... ....+..|+|.+++.+.+
T Consensus 76 ---------~d~~lG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 ---------CDEFLGQATLSADPNDSQT--LRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred ---------CCCceEEEEEecccCCCcC--ceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 4899999999999875444 6889996322 122344799999887643
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-16 Score=150.24 Aligned_cols=118 Identities=30% Similarity=0.613 Sum_probs=105.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCcee
Q 001696 285 SYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYL 364 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~l 364 (1026)
|.|.|+|++|++|+..+..+.+||||+|.+++...+|++++++.||.|||+|.|.+.+. ...|.|+|||++..+++++|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~~~i 79 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKPEFL 79 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCCcee
Confidence 47999999999999999888999999999999889999999999999999999998664 47899999999998899999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEe
Q 001696 365 GRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWM 410 (1026)
Q Consensus 365 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 410 (1026)
|++.+++.++..+. ..||.|......++..|+|.+++.+
T Consensus 80 G~~~~~l~~~~~~~-------~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 80 GKVAIPLLSIKNGE-------RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eEEEEEHHHCCCCC-------ceEEECcccCCCCceeeEEEEEEEe
Confidence 99999999986542 2899998876555689999998865
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.6e-17 Score=152.83 Aligned_cols=117 Identities=28% Similarity=0.528 Sum_probs=100.6
Q ss_pred eEEEEEEEEecCCCCCccCC---CCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeC-CCCEEEEEEEeCCCC
Q 001696 612 GILEVGILGAQGLLPMKMKD---GRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYD-PCTVITLGVFDNCHL 687 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~---~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~-~~~~l~i~v~d~~~~ 687 (1026)
|.|+|.|++|+||+.++... ..|.+||||++++++..++|++++++.||.|||.|.|.+.. +...|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 67999999999999874210 14689999999999999999999999999999999999986 477899999998863
Q ss_pred CCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEE
Q 001696 688 GGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRF 746 (1026)
Q Consensus 688 ~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 746 (1026)
++++||++.|+|+++..+.....||+|... ..|+|+|+++|
T Consensus 81 ------------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 81 ------------KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred ------------CCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 589999999999999887778999999621 45999998865
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.8e-17 Score=150.42 Aligned_cols=103 Identities=28% Similarity=0.388 Sum_probs=88.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeEeeeecCCCCCeEeEEEEEEecC---CCCCeEEEEEEeCC
Q 001696 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGN-------YKGRTKHFEKRMNPEWNQVFAFSKER---IQSSMLEVFLKDKE 356 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-------~~~kT~~~~~t~nP~wne~f~f~v~~---~~~~~L~v~V~d~~ 356 (1026)
|+|+|++|++|+..+ .|.+||||+|++.+ ++++|+++.+++||+|||+|.|.+.. +....|.|.|||++
T Consensus 2 L~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 2 VTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred EEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 899999999999887 48999999999832 25689999999999999999999853 34567999999999
Q ss_pred CCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCC
Q 001696 357 MVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRR 395 (1026)
Q Consensus 357 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 395 (1026)
..+++++||++.+++.++..+.... .|++|....
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~~~~~~-----~w~~L~~~~ 114 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQAGSCA-----CWLPLGRRI 114 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcCCCcEE-----EEEECcCcc
Confidence 8888999999999999999776544 899997653
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-16 Score=151.09 Aligned_cols=118 Identities=30% Similarity=0.513 Sum_probs=101.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCceeE
Q 001696 286 YLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLG 365 (1026)
Q Consensus 286 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG 365 (1026)
+|+|+|++|++|+.++..+.+||||+|.+++.+.+|++++++.||.|||+|.|.+.......|.|+|||++.++++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 38999999999999998889999999999999999999999999999999999987765678999999999999999999
Q ss_pred EEEEEccccCCCCCCCCCCCCEEEEeecCCCC----CcccceEEEEE
Q 001696 366 RVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGE----GKVRGQTMLAI 408 (1026)
Q Consensus 366 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~----~~~~G~i~l~~ 408 (1026)
++.+++.++....... .||.|...... ++..|.|.+.+
T Consensus 81 ~~~~~l~~l~~~~~~~-----~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 81 KVVFSIQTLQQAKQEE-----GWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEHHHcccCCCCC-----CEEECCCCCCCCccccCceEEEEEEe
Confidence 9999999997654333 89999864322 24678888765
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.71 E-value=3e-16 Score=149.39 Aligned_cols=120 Identities=22% Similarity=0.392 Sum_probs=100.4
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCc
Q 001696 284 MSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNY-KGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDD 362 (1026)
Q Consensus 284 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 362 (1026)
...|+|+|++|+||+.. +.+||||+|.+++. ..+|++ +++.||.|||+|.|.+.......+.|.|||.+..++|+
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS 78 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence 45799999999999875 46899999999885 468887 46899999999999875554467999999999999999
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCEEEEeecCCC-CCcccceEEEEEEecc
Q 001696 363 YLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRG-EGKVRGQTMLAIWMGT 412 (1026)
Q Consensus 363 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~~G~i~l~~~~~~ 412 (1026)
+||++.++|.++..+...+ .||+|..... .....|+|+++++|..
T Consensus 79 ~iG~v~i~l~~l~~~~~~~-----~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 79 EIAEVTVQLSKLQNGQETD-----EWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred eEEEEEEEHhHccCCCccc-----EeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 9999999999988765444 8999998653 2357799999998854
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-16 Score=152.31 Aligned_cols=123 Identities=30% Similarity=0.475 Sum_probs=105.3
Q ss_pred eEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCc
Q 001696 285 SYLYVRVVKAKDLPPSSI--TGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDD 362 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 362 (1026)
|.|+|+|++|++|+..+. .+.+||||+|.+++.+.+|++++++.||.|||+|.|.+.......|.|+|||++..++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 579999999999999888 889999999999999999999999999999999999998766789999999999988999
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCC--CcccceEEEEEE
Q 001696 363 YLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGE--GKVRGQTMLAIW 409 (1026)
Q Consensus 363 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~~G~i~l~~~ 409 (1026)
+||++.+++.++...... .....||.|.+.... ....|+|++.+.
T Consensus 81 ~lG~~~i~l~~~~~~~~~--~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 81 YLGEFDIALEEVFADGKT--GQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred cceEEEEEHHHhhccccc--CccceeEEccCcccCccccccceEEEEEE
Confidence 999999999998742111 123499999876432 347899999874
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=151.95 Aligned_cols=115 Identities=32% Similarity=0.608 Sum_probs=100.6
Q ss_pred cc-eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeeecCCCCCeEeEEEEEEecCC--C
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN---YKGRTKHFEKRMNPEWNQVFAFSKERI--Q 344 (1026)
Q Consensus 271 g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~kT~~~~~t~nP~wne~f~f~v~~~--~ 344 (1026)
|+ ++++.|+. ..+.|.|+|++|+||+..+..|.+||||+|.+.. ..++|++++++.||+|||+|.|.+... .
T Consensus 3 G~l~~sl~y~~--~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~ 80 (124)
T cd08387 3 GELHFSLEYDK--DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELP 80 (124)
T ss_pred CEEEEEEEECC--CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhC
Confidence 44 78889977 5689999999999999999899999999999942 468999999999999999999997533 3
Q ss_pred CCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEee
Q 001696 345 SSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLE 392 (1026)
Q Consensus 345 ~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 392 (1026)
...|.|+|||++.++++++||++.+++.++......+ .||+|.
T Consensus 81 ~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~-----~W~~l~ 123 (124)
T cd08387 81 KRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLD-----LWRKIQ 123 (124)
T ss_pred CCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcc-----eEEECc
Confidence 5689999999999999999999999999998765444 899986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=152.20 Aligned_cols=121 Identities=31% Similarity=0.376 Sum_probs=100.9
Q ss_pred ceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC--EEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCC
Q 001696 611 VGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ--KWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLG 688 (1026)
Q Consensus 611 ~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~--~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~ 688 (1026)
+|.|+|.|++|++|+..+ ...+.+||||++.+++ ..++|+++.++.||.|||.|.|.+....+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~--~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSD--IIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCccc--ccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCC
Confidence 489999999999998642 2346799999999987 789999999999999999999999866889999999998754
Q ss_pred CCCccCCCCCCCCCeeEEEEEEcccccCCceEe-eeEeeeecCCCCCccCcEEEEEEEEee
Q 001696 689 GGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYT-HSYPLLVLHPHGVKKMGELQLAIRFTI 748 (1026)
Q Consensus 689 ~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~-~~~~L~~~~~~g~~~~G~i~l~~~f~~ 748 (1026)
+|++||++.++|.++..+.... .+++|. .+.+..|+|+++++|.|
T Consensus 79 -----------~d~~iG~~~~~l~~l~~~~~~~~~~~~~~----~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 -----------KDKLIGTAEFDLSSLLQNPEQENLTKNLL----RNGKPVGELNYDLRFFP 124 (124)
T ss_pred -----------CCceeEEEEEEHHHhccCccccCcchhhh----cCCccceEEEEEEEeCC
Confidence 7899999999999998776554 345553 23344699999999854
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=151.48 Aligned_cols=103 Identities=24% Similarity=0.418 Sum_probs=91.5
Q ss_pred ceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC---CEEEEeeeecCCCCceeecEEEEEeeCC---CCEEEEEEEeC
Q 001696 611 VGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG---QKWVRTRTILDTFNPKWNEQYTWEVYDP---CTVITLGVFDN 684 (1026)
Q Consensus 611 ~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g---~~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~v~d~ 684 (1026)
.|.|.|.|++|+||+++ +..|.+||||++.++ ....||++++++.||.|||.|.|.+... ...|.|+|||+
T Consensus 15 ~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~ 91 (124)
T cd08387 15 MGILNVKLIQARNLQPR---DFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDF 91 (124)
T ss_pred CCEEEEEEEEeeCCCCC---CCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEEC
Confidence 47999999999999987 667889999999983 4569999999999999999999998753 56799999999
Q ss_pred CCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeee
Q 001696 685 CHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 727 (1026)
+.++ ++++||.+.|+|+++..+...+.||+|.
T Consensus 92 ~~~~-----------~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 92 DQFS-----------RDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCC-----------CCceeEEEEEecccccCCCCcceEEECc
Confidence 8765 7899999999999998777889999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-16 Score=150.70 Aligned_cols=113 Identities=24% Similarity=0.360 Sum_probs=97.9
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeEeeeecCCCCCeEeEEEEEEec--CCC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN------YKGRTKHFEKRMNPEWNQVFAFSKE--RIQ 344 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~------~~~kT~~~~~t~nP~wne~f~f~v~--~~~ 344 (1026)
++++.|+. ..+.|.|+|++|+||++++..|.+||||++.+.+ .+++|++++++.||+|||+|.|++. ++.
T Consensus 4 ~~sL~Y~~--~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~ 81 (124)
T cd08680 4 QIGLRYDS--GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY 81 (124)
T ss_pred EEEEEECC--CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence 78899987 6689999999999999998888999999999853 3689999999999999999999984 345
Q ss_pred CCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 001696 345 SSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRL 391 (1026)
Q Consensus 345 ~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 391 (1026)
+..|.|+|||++.++++++||++.|+|.++..... ....||+|
T Consensus 82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~----~~~~Wy~l 124 (124)
T cd08680 82 QKTLQVDVCSVGPDQQEECLGGAQISLADFESSEE----MSTKWYNL 124 (124)
T ss_pred cCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCc----cccccccC
Confidence 78999999999999999999999999999965432 23489876
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.9e-17 Score=153.29 Aligned_cols=118 Identities=19% Similarity=0.353 Sum_probs=99.0
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEeC-------------CceeeeccCCCCCCccc-ceeEEEeccCCCCCccceE
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFL-------------NQLSKTKTIPKNLNPVW-NQKLLFDFDQTKSHNHLRI 67 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~-------------~~~~~T~~~~~t~nP~W-ne~f~f~~~~~~~~~~~~L 67 (1026)
+..|++++|+||+ ++..|.+||||++++. +++++|+++++++||+| ||+|.|.+... ..|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~-----~~L 75 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPT-----DVL 75 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCC-----CEE
Confidence 5689999999997 7778999999999994 23789999999999999 99999998642 489
Q ss_pred EEEEeeCCCCCC-CCCccceeEEecCccccccCC--ceeEEeeccccccccccccccceeE
Q 001696 68 EVSIYHHERRPI-PGRHFLGRVRIPCSNLVRKGE--EVYQRFPLEKKWFLSSVKGEVGLKI 125 (1026)
Q Consensus 68 ~~~V~d~d~~~~-~~d~~lG~~~i~l~~l~~~~~--~~~~w~~L~~~~~~~~~~G~l~l~~ 125 (1026)
.|+|||++.... ..+++||++.|++.++..... ....||+|++++..+.++|+|.+++
T Consensus 76 ~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 76 EIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999999543211 127999999999999976543 3778999999999999999999886
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-16 Score=149.85 Aligned_cols=105 Identities=24% Similarity=0.369 Sum_probs=89.7
Q ss_pred EEEEEEEEeEecCCCCCC-CCCCcEEEEEEC-----CeEEEeeeecCCCCCCcccceeEEEeeCC--CcCeEEEEEEEcc
Q 001696 449 YLRVNVIEAQDIVPNDRN-RLPEGFVKVQVG-----NQVLKTKICPTPTTNPLWNEDLVFVAAEP--FEEQLFLTVEDRV 520 (1026)
Q Consensus 449 ~l~V~I~~a~~L~~~d~~-~~~dpyV~v~lg-----~~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~d 520 (1026)
.|.|+|++|+||+.++.. +.+||||++++. ....||+++ +++.||+|||+|.|.+... ....|.|.|||.+
T Consensus 16 ~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~-~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~ 94 (128)
T cd08392 16 CLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVK-KGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSR 94 (128)
T ss_pred EEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccc-cCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCC
Confidence 699999999999998875 889999999993 247799999 7999999999999998553 3569999999999
Q ss_pred CCCCCceeEEEEEeCcccccccCCCCccceeEEcc
Q 001696 521 HASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLE 555 (1026)
Q Consensus 521 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 555 (1026)
.++++++||++.|+|+++... +......+||+|.
T Consensus 95 ~~~~~~~lG~~~i~L~~~~~~-~~~~~~~~W~~l~ 128 (128)
T cd08392 95 TLKRRVFLGEVLIPLADWDFE-DTDSQRFLWYPLN 128 (128)
T ss_pred CCcCcceEEEEEEEcCCcccC-CCCccccceEECc
Confidence 889999999999999998643 2234678999984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-16 Score=149.57 Aligned_cols=101 Identities=18% Similarity=0.321 Sum_probs=87.5
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeeeecCCCCceeecEEEEEeeCC--CCEEEEEEEeC
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ-----KWVRTRTILDTFNPKWNEQYTWEVYDP--CTVITLGVFDN 684 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~-----~~~~T~~~~~t~~P~wne~~~~~v~~~--~~~l~i~v~d~ 684 (1026)
+.|.|+|++|+||+++ + .|.+||||++++.+ .+.||++++++.||.|||.|.|.+... ...|.|+|||.
T Consensus 12 ~~L~V~Vi~ar~L~~~---~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~ 87 (119)
T cd08685 12 RKLTLHVLEAKGLRST---N-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNK 87 (119)
T ss_pred CEEEEEEEEEECCCCC---C-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECC
Confidence 6899999999999987 5 67899999999853 467999999999999999999998653 45799999998
Q ss_pred CCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEee
Q 001696 685 CHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPL 726 (1026)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L 726 (1026)
+..+ .++++||.+.|+|.++..+..+..||.|
T Consensus 88 ~~~~----------~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 88 LSKS----------RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCc----------CCCEEEEEEEecHHHhccCccccceEeC
Confidence 8643 2478999999999999888878999986
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-16 Score=151.02 Aligned_cols=115 Identities=28% Similarity=0.488 Sum_probs=99.4
Q ss_pred cc-eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecC--
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKER-- 342 (1026)
Q Consensus 271 g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~-- 342 (1026)
|+ ++++.|+. ..+.|.|+|++|+||+..+..+.+||||+|.+.+ .+++|++++++.||+|||+|.|.+..
T Consensus 3 G~l~~~l~y~~--~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~ 80 (127)
T cd04030 3 GRIQLTIRYSS--QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE 80 (127)
T ss_pred eEEEEEEEEeC--CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence 55 88999987 5689999999999999999888999999999963 57899999999999999999999843
Q ss_pred CCCCeEEEEEEeCCCC--CCCceeEEEEEEccccCCCCCCCCCCCCEEEEee
Q 001696 343 IQSSMLEVFLKDKEMV--GRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLE 392 (1026)
Q Consensus 343 ~~~~~L~v~V~d~~~~--~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 392 (1026)
+....|.|.|||.+.+ +++++||++.+++.++....... .||+|.
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~-----~W~~L~ 127 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFT-----QWYDLT 127 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCcc-----ceEECc
Confidence 3457899999999875 68999999999999997654433 899884
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.69 E-value=3e-16 Score=149.59 Aligned_cols=113 Identities=31% Similarity=0.493 Sum_probs=98.6
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeeecCCCCCeEeEEEEEEecC--CCCCe
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN---YKGRTKHFEKRMNPEWNQVFAFSKER--IQSSM 347 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~ 347 (1026)
.+++.|+. ..+.|.|+|++|+||+..+..+.+||||+|.+.+ .+++|++++++.||+|||+|.|.+.. .....
T Consensus 6 ~~~l~y~~--~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~ 83 (124)
T cd08385 6 QFSLDYDF--QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKT 83 (124)
T ss_pred EEEEEEeC--CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCE
Confidence 78888977 4589999999999999999889999999999864 36799999999999999999999853 33568
Q ss_pred EEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEee
Q 001696 348 LEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLE 392 (1026)
Q Consensus 348 L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 392 (1026)
|.|+|||++.++++++||++.+++.++..+...+ .|++|+
T Consensus 84 l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~-----~W~~l~ 123 (124)
T cd08385 84 LVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTE-----EWRDLE 123 (124)
T ss_pred EEEEEEeCCCCCCCceeEEEEEecCcccCCCCcc-----eEEEcc
Confidence 9999999999999999999999999987654433 999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-16 Score=149.79 Aligned_cols=117 Identities=24% Similarity=0.372 Sum_probs=97.2
Q ss_pred cc-eeEeeeccccceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeEeeeecCCCCCeEeEEEEEE-ec--C
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSIT-GSCDPYVEVKMGN---YKGRTKHFEKRMNPEWNQVFAFS-KE--R 342 (1026)
Q Consensus 271 g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~---~~~kT~~~~~t~nP~wne~f~f~-v~--~ 342 (1026)
|+ ++++.|+. ..+.|.|+|++|+||+..+.. |.+||||+|.+.+ ++.||++++++.||.|||+|.|. +. +
T Consensus 3 G~l~~~l~y~~--~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~ 80 (128)
T cd08388 3 GTLFFSLRYNS--EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQ 80 (128)
T ss_pred eEEEEEEEEEC--CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHH
Confidence 45 88999987 558999999999999998875 8899999999963 46799999999999999999994 42 3
Q ss_pred CCCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEee
Q 001696 343 IQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLE 392 (1026)
Q Consensus 343 ~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 392 (1026)
.....|.|+|||++.++++++||++.++|.++...... ....|++|+
T Consensus 81 ~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~---~~~~~~~~~ 127 (128)
T cd08388 81 LQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEG---ELLVSREIQ 127 (128)
T ss_pred hCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCc---eEEEEEecc
Confidence 33468999999999999999999999999999765221 133788775
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-16 Score=150.02 Aligned_cols=114 Identities=39% Similarity=0.657 Sum_probs=96.8
Q ss_pred cc-eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecC--
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKER-- 342 (1026)
Q Consensus 271 g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~-- 342 (1026)
|+ .+++.|+. ..+.|.|+|++|++|+..+..+.+||||+|.+.+ .+++|++++++.||+|||+|.|.+..
T Consensus 3 G~l~~~l~~~~--~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~ 80 (125)
T cd04031 3 GRIQIQLWYDK--VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRE 80 (125)
T ss_pred EEEEEEEEEeC--CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHH
Confidence 45 78888887 4589999999999999999888999999999975 46799999999999999999998533
Q ss_pred -CCCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEee
Q 001696 343 -IQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLE 392 (1026)
Q Consensus 343 -~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 392 (1026)
.....|.|+|||++.++++++||++.++|.+..... ...||+|+
T Consensus 81 ~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~~------~~~W~~L~ 125 (125)
T cd04031 81 TLKERTLEVTVWDYDRDGENDFLGEVVIDLADALLDD------EPHWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeeEEEEecccccccC------CcceEECc
Confidence 245789999999999989999999999999833221 23899985
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.7e-16 Score=147.65 Aligned_cols=113 Identities=27% Similarity=0.462 Sum_probs=98.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCce
Q 001696 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGN---YKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDY 363 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 363 (1026)
|.|+|++|++|+..+..+.+||||++.+++ .+.+|++++++.||+|||+|.|.+.......|.|+|||++.+ ++++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999998888999999999964 578999999999999999999998765556899999999998 8999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEe
Q 001696 364 LGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWM 410 (1026)
Q Consensus 364 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 410 (1026)
||++.+++.++..+.... .|++|.... .|+|.+.+.+
T Consensus 81 iG~~~~~l~~l~~g~~~~-----~~~~L~~~~-----~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVR-----VTFSLNPQG-----KEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcEE-----EEEECCCCC-----CceEEEEEEe
Confidence 999999999998765544 899998642 5888887754
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-16 Score=146.88 Aligned_cols=107 Identities=26% Similarity=0.375 Sum_probs=94.6
Q ss_pred CceEEEEEEEEEeEecCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCCcccceeEEEeeCCC----cCeEEEEEEEcc
Q 001696 445 PKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPF----EEQLFLTVEDRV 520 (1026)
Q Consensus 445 p~~~~l~V~I~~a~~L~~~d~~~~~dpyV~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~~----~~~L~i~V~d~d 520 (1026)
|+.+.|+|+|++|++|. ++.+||||+++++++.++|+++ +++.||.|||.|.|.+..+. ...|.|+|||++
T Consensus 1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~-~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~ 75 (111)
T cd04011 1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVK-KGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR 75 (111)
T ss_pred CCcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEE-eccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc
Confidence 45688999999999998 5679999999999999999999 68999999999999986542 468999999999
Q ss_pred CCCCCceeEEEEEeCcccccccCCCCccceeEEcccC
Q 001696 521 HASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKF 557 (1026)
Q Consensus 521 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 557 (1026)
..+++++||++.++|+++... +.+....+|++|.++
T Consensus 76 ~~~~~~~iG~~~i~l~~v~~~-~~~~~~~~w~~L~~~ 111 (111)
T cd04011 76 SLRSDTLIGSFKLDVGTVYDQ-PDHAFLRKWLLLTDP 111 (111)
T ss_pred ccccCCccEEEEECCccccCC-CCCcceEEEEEeeCc
Confidence 888999999999999999865 556788999999764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.9e-16 Score=144.20 Aligned_cols=102 Identities=28% Similarity=0.381 Sum_probs=88.2
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCce
Q 001696 284 MSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDY 363 (1026)
Q Consensus 284 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 363 (1026)
++.|.|+|++|++|+.++ ..||||+|++++++.+|++.++ .||.|||+|.|.+.+.. ..|.|+|||++.+ .|++
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~-~DD~ 74 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLI-WDTL 74 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCc-CCCc
Confidence 367999999999997654 4699999999999999999987 59999999999998764 4599999999976 9999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCEEEEeecC
Q 001696 364 LGRVAFDLNEVPTRVPPDSPLAPQWYRLEDR 394 (1026)
Q Consensus 364 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 394 (1026)
||++.|+|.++..+. .+..++||+|...
T Consensus 75 lG~v~i~L~~v~~~~---~~~~~~Wy~L~~~ 102 (127)
T cd08394 75 VGTVWIPLSTIRQSN---EEGPGEWLTLDSE 102 (127)
T ss_pred eEEEEEEhHHcccCC---CCCCCccEecChH
Confidence 999999999998763 3456799999854
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.1e-16 Score=147.46 Aligned_cols=114 Identities=32% Similarity=0.564 Sum_probs=99.5
Q ss_pred eEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCC
Q 001696 285 SYLYVRVVKAKDLPPSSI------TGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMV 358 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d~------~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~ 358 (1026)
|.|+|+|++|++|+..+. .|.+||||+|++++..++|++++++.||.|||+|.|.+.+.....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 468999999999998874 36899999999999999999999999999999999999766678999999999988
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEE
Q 001696 359 GRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIW 409 (1026)
Q Consensus 359 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 409 (1026)
++++||++.+++.++...... ..||+|.+. ..|+|++.+.
T Consensus 81 -~~~~iG~~~i~l~~l~~~~~~-----~~w~~L~~~-----~~G~~~~~~~ 120 (121)
T cd08391 81 -KDDFLGRLSIDLGSVEKKGFI-----DEWLPLEDV-----KSGRLHLKLE 120 (121)
T ss_pred -CCCcEEEEEEEHHHhcccCcc-----ceEEECcCC-----CCceEEEEEe
Confidence 899999999999999865433 399999864 3589988764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-16 Score=149.62 Aligned_cols=104 Identities=17% Similarity=0.245 Sum_probs=89.2
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEeC------CceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCC
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFL------NQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHE 75 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~------~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d 75 (1026)
+|.|+|++|+||++.+..|.+||||++++- +.+++|+++++++||+|||+|.|.+.. +++....|.|.|||++
T Consensus 15 ~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~-~~L~~~~L~~~V~~~~ 93 (124)
T cd08680 15 SLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISS-TKLYQKTLQVDVCSVG 93 (124)
T ss_pred EEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCH-HHhhcCEEEEEEEeCC
Confidence 699999999999998888999999999982 257899999999999999999999765 3456679999999965
Q ss_pred CCCCCCCccceeEEecCccccccCCceeEEeec
Q 001696 76 RRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPL 108 (1026)
Q Consensus 76 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L 108 (1026)
+. +++++||++.|+|.++.........||+|
T Consensus 94 ~~--~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 94 PD--QQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CC--CceeEEEEEEEEhhhccCCCccccccccC
Confidence 43 57899999999999996665557789876
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-16 Score=151.69 Aligned_cols=103 Identities=33% Similarity=0.504 Sum_probs=88.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEec---------------CCCCC
Q 001696 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKE---------------RIQSS 346 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~---------------~~~~~ 346 (1026)
|.|+|++|+||+. .+|.+||||+|.+.+ .+.+|+++++|.||+|||+|.|.+. +....
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 7899999999988 568999999999976 5689999999999999999999984 22246
Q ss_pred eEEEEEEeCCCCCCCceeEEEEEEccccCCC-CCCCCCCCCEEEEeecCCC
Q 001696 347 MLEVFLKDKEMVGRDDYLGRVAFDLNEVPTR-VPPDSPLAPQWYRLEDRRG 396 (1026)
Q Consensus 347 ~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~~~w~~L~~~~~ 396 (1026)
.|.|.|||++.+++|++||++.|++..+... .. ...||+|.....
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~-----~~~W~~L~~~~~ 125 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGS-----HQAWYFLQPREE 125 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEecccccccCCc-----CcceeecCCccc
Confidence 7999999999988999999999999998875 22 238999987654
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.9e-16 Score=147.53 Aligned_cols=102 Identities=28% Similarity=0.394 Sum_probs=90.4
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC---CEEEEeeeecCCCCceeecEEEEEeeCC---CCEEEEEEEeCC
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG---QKWVRTRTILDTFNPKWNEQYTWEVYDP---CTVITLGVFDNC 685 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g---~~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~v~d~~ 685 (1026)
+.|+|+|++|+||+.+ +..+.+||||++.+. ...+||++++++.||.|||.|.|.+... ...|.|+|||++
T Consensus 16 ~~L~V~v~~a~~L~~~---d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d 92 (124)
T cd08385 16 NQLTVGIIQAADLPAM---DMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFD 92 (124)
T ss_pred CEEEEEEEEeeCCCCc---cCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 7899999999999987 667889999999884 3568999999999999999999998752 457999999999
Q ss_pred CCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeee
Q 001696 686 HLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 727 (1026)
.++ ++++||++.|+|+++..+....+||+|.
T Consensus 93 ~~~-----------~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 93 RFS-----------KHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCC-----------CCceeEEEEEecCcccCCCCcceEEEcc
Confidence 865 7899999999999998888889999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.7e-16 Score=146.85 Aligned_cols=124 Identities=21% Similarity=0.375 Sum_probs=103.0
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEE-EEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCC
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKW-VRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGG 690 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~-~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 690 (1026)
..|.|.|++|+||+++ .||||.|.+++.. .||+++.++.||.|||.|.|....+...|+|.|++.+... +
T Consensus 11 ~sL~v~V~EAk~Lp~~--------~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~-~ 81 (146)
T cd04013 11 NSLKLWIIEAKGLPPK--------KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKK-K 81 (146)
T ss_pred EEEEEEEEEccCCCCc--------CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcc-c
Confidence 4799999999999885 2799999999888 6999999999999999999988777788999998655321 0
Q ss_pred CccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCC-------CccCcEEEEEEEEeecc
Q 001696 691 EKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHG-------VKKMGELQLAIRFTIFS 750 (1026)
Q Consensus 691 ~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g-------~~~~G~i~l~~~f~~~~ 750 (1026)
...++.+||++.|++.+|.++...+.||||....... .+..++|+++++|.+..
T Consensus 82 ------~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 82 ------KKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred ------cccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 0126899999999999999999999999999765443 23357999999998753
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.2e-16 Score=144.29 Aligned_cols=103 Identities=27% Similarity=0.467 Sum_probs=93.0
Q ss_pred EEEEEEEeEecCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCCcccceeEEEeeCCCcCeEEEEEEEccCCCCCceeE
Q 001696 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASKDEVLG 529 (1026)
Q Consensus 450 l~V~I~~a~~L~~~d~~~~~dpyV~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~~lG 529 (1026)
|.|+|++|++|+..+..+.+||||+++++++.++|+++ +++.||.|||.|.|.+.++..+.|.|+|+|.+. +++||
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~-~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVK-ERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccc-cCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 78999999999998888899999999999999999999 799999999999999998877899999999875 88999
Q ss_pred EEEEeCcccccccCCCCccceeEEcccCC
Q 001696 530 KISLPLHIFEKRLDHRPVHSRWFNLEKFG 558 (1026)
Q Consensus 530 ~~~i~l~~l~~~~~~~~~~~~w~~L~~~~ 558 (1026)
++.++|.++... .....++||+|.+.+
T Consensus 78 ~~~i~l~~l~~~--~~~~~~~w~~L~~~g 104 (105)
T cd04050 78 SLTLPLSELLKE--PDLTLDQPFPLDNSG 104 (105)
T ss_pred EEEEEHHHhhcc--ccceeeeeEecCCCC
Confidence 999999998864 235689999998753
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.8e-16 Score=148.07 Aligned_cols=114 Identities=25% Similarity=0.381 Sum_probs=98.3
Q ss_pred cc-eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeeecCCCCCeEeEEEEEE-ec--CC
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN---YKGRTKHFEKRMNPEWNQVFAFS-KE--RI 343 (1026)
Q Consensus 271 g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~kT~~~~~t~nP~wne~f~f~-v~--~~ 343 (1026)
|+ ++++.|+. ..+.|.|+|++|+||++.+..|.+||||++.+.+ ++.+|+++++ .||+|||+|.|. +. +.
T Consensus 3 G~l~~sl~Y~~--~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l 79 (124)
T cd08389 3 GDLDVAFEYDP--SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEEL 79 (124)
T ss_pred EEEEEEEEECC--CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHh
Confidence 45 88999987 5589999999999999999888999999988754 4689999887 999999999998 53 33
Q ss_pred CCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEee
Q 001696 344 QSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLE 392 (1026)
Q Consensus 344 ~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 392 (1026)
....|.|+|||++.++++++||++.|+|.++...... ..||+|+
T Consensus 80 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~-----~~w~~L~ 123 (124)
T cd08389 80 NNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGET-----TVWLTLE 123 (124)
T ss_pred ccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCc-----eEEEeCC
Confidence 5678999999999999999999999999999765443 3999987
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.7e-16 Score=147.94 Aligned_cols=115 Identities=32% Similarity=0.581 Sum_probs=99.2
Q ss_pred cc-eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeEeeeecCCCCCeEeEEEEEEec---CC
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMG---NYKGRTKHFEKRMNPEWNQVFAFSKE---RI 343 (1026)
Q Consensus 271 g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~v~---~~ 343 (1026)
|+ ++++.|.. ..+.|.|+|++|+||+..+..+.+||||+|.+. +.+.+|++++++.||.|||+|.|.+. ..
T Consensus 3 G~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l 80 (125)
T cd08386 3 GRIQFSVSYDF--QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKL 80 (125)
T ss_pred cEEEEEEEECC--CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHh
Confidence 45 88899976 568999999999999999988899999999994 35789999999999999999999742 23
Q ss_pred CCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEee
Q 001696 344 QSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLE 392 (1026)
Q Consensus 344 ~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 392 (1026)
....|.|+|||++.++++++||++.+++.++......+ .|+.|.
T Consensus 81 ~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~-----~W~~l~ 124 (125)
T cd08386 81 QQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQT-----FWKDLK 124 (125)
T ss_pred CCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcc-----eEEecC
Confidence 45689999999999999999999999999998765444 999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-15 Score=150.16 Aligned_cols=121 Identities=25% Similarity=0.455 Sum_probs=102.0
Q ss_pred eeEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCee-eEeeeecCCCCCeE
Q 001696 284 MSYLYVRVVKAKDLPPSS------------------------------ITGSCDPYVEVKMGNYK-GRTKHFEKRMNPEW 332 (1026)
Q Consensus 284 ~~~L~V~v~~a~~L~~~d------------------------------~~g~~dpyv~v~~~~~~-~kT~~~~~t~nP~w 332 (1026)
.|.|.|+|++|++|+.+| ..|.+||||+|.+++.+ .+|++++++.||.|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 489999999999999987 34678999999999864 69999999999999
Q ss_pred eEEEEEEecCCCCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCC-cccceEEEEEEec
Q 001696 333 NQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEG-KVRGQTMLAIWMG 411 (1026)
Q Consensus 333 ne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~~~~~ 411 (1026)
||+|.|.+... ...|.|+|||.+.++ +++||++.+++.++..+...+ .||+|.+..+.. +..|.|++++.|.
T Consensus 86 nE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~-----~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 86 NESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVE-----GWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred ceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcc-----eEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 99999998655 468999999999884 689999999999998765444 999998865442 3468999998873
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.2e-16 Score=146.45 Aligned_cols=115 Identities=33% Similarity=0.570 Sum_probs=100.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCC-------
Q 001696 286 YLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMV------- 358 (1026)
Q Consensus 286 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~------- 358 (1026)
.|+|+|++|++|+..+..|.+||||+|.+++...+|++++++.||.|||+|.|.+... ...|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccccce
Confidence 5899999999999999889999999999998899999999999999999999998655 46899999999852
Q ss_pred ----CCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEE
Q 001696 359 ----GRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAI 408 (1026)
Q Consensus 359 ----~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~ 408 (1026)
+.+++||++.+++.++... ...||.|+.....+..+|+|++++
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~~~-------~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLSGE-------MDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eccccCCCcceEEEEEhHHccCC-------CCeEEECccCCCCCcEeEEEEEEC
Confidence 4799999999999987532 239999998776667899998863
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=147.13 Aligned_cols=122 Identities=25% Similarity=0.455 Sum_probs=99.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCC---------CCCeEEEEEEeCC
Q 001696 286 YLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERI---------QSSMLEVFLKDKE 356 (1026)
Q Consensus 286 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~---------~~~~L~v~V~d~~ 356 (1026)
+|+|+|++|++|+.++..|.+||||+|.+++++.+|++++++.||.|||+|.|.+... ....|.|+|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 6899999999999999999999999999999999999999999999999999975322 1257999999999
Q ss_pred CCCCCceeEEEEE-EccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecc
Q 001696 357 MVGRDDYLGRVAF-DLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGT 412 (1026)
Q Consensus 357 ~~~~d~~lG~~~i-~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 412 (1026)
..++|++||++.+ ++..+.... .+...++|++|.... ...|+|++++.+..
T Consensus 82 ~~~~d~~iG~~~i~~~~~~~~~~--~~~~~~~W~~L~~~~---~~~Geil~~~~~~~ 133 (135)
T cd04017 82 SVGKDEFLGRSVAKPLVKLDLEE--DFPPKLQWFPIYKGG---QSAGELLAAFELIE 133 (135)
T ss_pred CCCCCccceEEEeeeeeecccCC--CCCCCceEEEeecCC---CchhheeEEeEEEE
Confidence 9999999999997 444443321 223456999998542 46899999987754
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-16 Score=146.73 Aligned_cols=109 Identities=22% Similarity=0.437 Sum_probs=90.5
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecCC-CCC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKERI-QSS 346 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~ 346 (1026)
++++.| ..+.|.|+|++|+||++++ .|.+||||++++.+ .+.||++++++.||+|||+|.|.+... ...
T Consensus 4 ~l~~~~----~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~ 78 (119)
T cd08685 4 KLSIEG----QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQK 78 (119)
T ss_pred EEEEEE----cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCC
Confidence 444555 4589999999999999998 78999999999975 256899999999999999999998532 235
Q ss_pred eEEEEEEeCCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 001696 347 MLEVFLKDKEMVG-RDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRL 391 (1026)
Q Consensus 347 ~L~v~V~d~~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 391 (1026)
.|.|+|||++..+ .+++||.+.|++.++..+...+ .||.|
T Consensus 79 ~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~-----~Wy~l 119 (119)
T cd08685 79 RLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEIS-----GWYYL 119 (119)
T ss_pred EEEEEEECCCCCcCCCEEEEEEEecHHHhccCcccc-----ceEeC
Confidence 7999999998875 4789999999999998654444 89976
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=7e-16 Score=147.81 Aligned_cols=104 Identities=22% Similarity=0.276 Sum_probs=90.4
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-----CEEEEeeeecCCCCceeecEEEEEeeCC---CCEEEEEEEe
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG-----QKWVRTRTILDTFNPKWNEQYTWEVYDP---CTVITLGVFD 683 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g-----~~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~v~d 683 (1026)
+.|+|.|++|+||+.+ +..+.+||||+|.+. ...+||++++++.||.|||.|.|.+... ...|.|.|||
T Consensus 16 ~~L~V~vi~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~ 92 (127)
T cd04030 16 QKLIVTVHKCRNLPPC---DSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKN 92 (127)
T ss_pred CEEEEEEEEEECCCCc---cCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEE
Confidence 7899999999999987 667899999999984 4679999999999999999999998643 4689999999
Q ss_pred CCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeee
Q 001696 684 NCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 727 (1026)
++.+. .+++++||.+.|+|.++..+.....||+|.
T Consensus 93 ~~~~~---------~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 93 SKSFL---------SREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred CCccc---------CCCCceEEEEEEecccccccCCccceEECc
Confidence 88641 137999999999999998888889999983
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.67 E-value=3e-16 Score=148.80 Aligned_cols=106 Identities=29% Similarity=0.380 Sum_probs=89.5
Q ss_pred CceEEEEeecCCCccCCCCCCCCCEEEEEe---CCceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCC
Q 001696 1 MKLVVEVVDAYDLMPKDGEGSASPFAEVDF---LNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERR 77 (1026)
Q Consensus 1 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~---~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~ 77 (1026)
++|.|+|++|+||++.+.+|.+||||++.+ .+++++|+++++ .||+|||+|.|...+.+.+....|.|.|||++..
T Consensus 16 ~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~ 94 (124)
T cd08389 16 RKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERM 94 (124)
T ss_pred CEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCc
Confidence 369999999999999998999999999887 236889999887 9999999999994444445567899999996653
Q ss_pred CCCCCccceeEEecCccccccCCceeEEeeccc
Q 001696 78 PIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEK 110 (1026)
Q Consensus 78 ~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~ 110 (1026)
+++++||++.|+|+++.... ....||+|++
T Consensus 95 --~~~~~lG~~~i~L~~l~~~~-~~~~w~~L~p 124 (124)
T cd08389 95 --RKERLIGEKVVPLSQLNLEG-ETTVWLTLEP 124 (124)
T ss_pred --ccCceEEEEEEeccccCCCC-CceEEEeCCC
Confidence 57999999999999996654 4889999975
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.2e-16 Score=149.37 Aligned_cols=107 Identities=20% Similarity=0.363 Sum_probs=87.7
Q ss_pred ceEEEEeecCCCccCCCC-CCCCCEEEEEeC---CceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCC
Q 001696 2 KLVVEVVDAYDLMPKDGE-GSASPFAEVDFL---NQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERR 77 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~-g~~dpyv~v~~~---~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~ 77 (1026)
+|.|+|++|+||+..+.. |.+||||+|.+. +++++|+++++|+||+|||+|.|...+........|.|+|||+|+.
T Consensus 17 ~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~ 96 (128)
T cd08388 17 ALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRY 96 (128)
T ss_pred EEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCC
Confidence 689999999999988876 899999999994 4577999999999999999999953333333345799999996653
Q ss_pred CCCCCccceeEEecCcccccc-CCceeEEeeccc
Q 001696 78 PIPGRHFLGRVRIPCSNLVRK-GEEVYQRFPLEK 110 (1026)
Q Consensus 78 ~~~~d~~lG~~~i~l~~l~~~-~~~~~~w~~L~~ 110 (1026)
+++++||++.|+|.++... ......|.+|++
T Consensus 97 --~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 97 --SRDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred --CCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 4899999999999998655 334788998864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=146.73 Aligned_cols=118 Identities=25% Similarity=0.344 Sum_probs=99.7
Q ss_pred ceEEEEEEEEecCCCCCccC-------CCCCCcCcEEEEEECCEE-EEeeeecCCCCceeecEEEEEeeCCCCEEEEEEE
Q 001696 611 VGILEVGILGAQGLLPMKMK-------DGRGSTDAYCIAKYGQKW-VRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVF 682 (1026)
Q Consensus 611 ~g~L~v~v~~a~~L~~~~~~-------~~~~~~dpyv~v~~g~~~-~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~ 682 (1026)
.|.|+|.|++|+||...+.. .+.|.+||||++.++++. .+|++++++.||.|||.|.|.+. ....|.|.||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEE
Confidence 38999999999999887420 013689999999999866 69999999999999999999997 4567999999
Q ss_pred eCCCCCCCCccCCCCCCCCCeeEEEEEEcccccC--CceEeeeEeeeecCCCCCccCcEEEEEEEEee
Q 001696 683 DNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEA--HRIYTHSYPLLVLHPHGVKKMGELQLAIRFTI 748 (1026)
Q Consensus 683 d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 748 (1026)
|++.++ .+++||++.|+|+++.. +.....||+|. ..|+|+|++.|..
T Consensus 82 d~~~~~-----------~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIG-----------PDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred eCCCCC-----------CCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 988754 78999999999999876 56679999995 3599999998854
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.4e-16 Score=142.74 Aligned_cols=99 Identities=17% Similarity=0.161 Sum_probs=86.9
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCCC
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGE 691 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 691 (1026)
+.|.|.|++|++|+.. +..||||+|++|+++.+|+++++ .||.|||.|.|.+.++...|.|+|||++.+
T Consensus 2 ~~L~V~Vv~Ar~L~~~------~~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~---- 70 (127)
T cd08394 2 SLLCVLVKKAKLDGAP------DKFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI---- 70 (127)
T ss_pred ceEEEEEEEeeCCCCC------CCCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc----
Confidence 6899999999999753 24589999999999999999988 499999999999998888899999998853
Q ss_pred ccCCCCCCCCCeeEEEEEEcccccCCceE--eeeEeeeec
Q 001696 692 KQNGSSAVRDSRIGKVRIRLSTLEAHRIY--THSYPLLVL 729 (1026)
Q Consensus 692 ~~~~~~~~~~~~lG~~~i~l~~l~~~~~~--~~~~~L~~~ 729 (1026)
.|++||++.|+|+++..+... ..||+|...
T Consensus 71 --------~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 71 --------WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred --------CCCceEEEEEEhHHcccCCCCCCCccEecChH
Confidence 699999999999999765544 899999843
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.3e-16 Score=147.25 Aligned_cols=112 Identities=21% Similarity=0.447 Sum_probs=96.6
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecC--CC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSS-ITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKER--IQ 344 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~--~~ 344 (1026)
++++.|+. ..+.|.|+|++|+||+..+ ..+.+||||+|.+.+ .+.+|++++++.||+|||+|.|.+.. ..
T Consensus 4 ~~~l~y~~--~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~ 81 (123)
T cd08521 4 EFSLSYNY--KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLE 81 (123)
T ss_pred EEEEEEeC--CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhC
Confidence 78889976 5589999999999999988 778999999999843 35799999999999999999999754 23
Q ss_pred CCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 001696 345 SSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRL 391 (1026)
Q Consensus 345 ~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 391 (1026)
...|.|+|||++.++++++||++.++|.++..+...+ .||+|
T Consensus 82 ~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~-----~w~~l 123 (123)
T cd08521 82 TRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQS-----EWYPL 123 (123)
T ss_pred CCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCc-----cEEEC
Confidence 5689999999999999999999999999997554433 89986
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.9e-16 Score=147.03 Aligned_cols=100 Identities=27% Similarity=0.387 Sum_probs=85.2
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeeeecCCCCceeecEEEEEeeC----CCCEEEEEEE
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ-----KWVRTRTILDTFNPKWNEQYTWEVYD----PCTVITLGVF 682 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~-----~~~~T~~~~~t~~P~wne~~~~~v~~----~~~~l~i~v~ 682 (1026)
|.|.|+|++|+||+.+ +..+.+||||+|.+.+ ...||++++++.||.|||.|.|.+.. ....|.|+||
T Consensus 16 ~~L~V~vi~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~ 92 (125)
T cd04031 16 SQLIVTVLQARDLPPR---DDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW 92 (125)
T ss_pred CEEEEEEEEecCCCCc---CCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence 7899999999999987 5568899999999854 57899999999999999999999754 2567999999
Q ss_pred eCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEee
Q 001696 683 DNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPL 726 (1026)
Q Consensus 683 d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L 726 (1026)
|++.++ ++++||++.++|++.... ...+||+|
T Consensus 93 d~~~~~-----------~~~~iG~~~i~l~~~~~~-~~~~W~~L 124 (125)
T cd04031 93 DYDRDG-----------ENDFLGEVVIDLADALLD-DEPHWYPL 124 (125)
T ss_pred eCCCCC-----------CCcEeeEEEEeccccccc-CCcceEEC
Confidence 998764 789999999999984222 23789998
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.9e-16 Score=144.99 Aligned_cols=100 Identities=29% Similarity=0.467 Sum_probs=89.3
Q ss_pred EEEEEEEecCCCCCccCC-CCCCcCcEEEEEECCEEEEeeeecCCCCcee-ecEEEEEeeCC---CCEEEEEEEeCCCCC
Q 001696 614 LEVGILGAQGLLPMKMKD-GRGSTDAYCIAKYGQKWVRTRTILDTFNPKW-NEQYTWEVYDP---CTVITLGVFDNCHLG 688 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~-~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~w-ne~~~~~v~~~---~~~l~i~v~d~~~~~ 688 (1026)
|+|+|++|+||+.+ + ..|.+||||++.+++..+||+++++++||.| ||.|.|.+... ...|.|+|||++.++
T Consensus 1 l~V~v~~a~~L~~~---d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVM---DRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCcc---ccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 57999999999987 4 3678999999999999999999999999999 99999999864 468999999999865
Q ss_pred CCCccCCCCCCCCCeeEEEEEEcccccC---CceEeeeEeee
Q 001696 689 GGEKQNGSSAVRDSRIGKVRIRLSTLEA---HRIYTHSYPLL 727 (1026)
Q Consensus 689 ~~~~~~~~~~~~~~~lG~~~i~l~~l~~---~~~~~~~~~L~ 727 (1026)
++++||++.++|.++.. +..+..||+|.
T Consensus 78 -----------~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 78 -----------ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred -----------CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 78999999999999976 45679999996
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.2e-16 Score=142.31 Aligned_cols=96 Identities=23% Similarity=0.331 Sum_probs=83.4
Q ss_pred eEEEEEEEEecCCCCCccCC-CCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeCC--CCEEEEEEEeCCCCC
Q 001696 612 GILEVGILGAQGLLPMKMKD-GRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDP--CTVITLGVFDNCHLG 688 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~-~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~--~~~l~i~v~d~~~~~ 688 (1026)
|.|.|+|++|++|++.+... ..+.+||||+|+++++.+||+++++++||+|||.|.|.+.+. ...|.|+|||++.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 78999999999999875311 224689999999999999999999999999999999999764 447999999999865
Q ss_pred CCCccCCCCCCCCCeeEEEEEEcccccCCc
Q 001696 689 GGEKQNGSSAVRDSRIGKVRIRLSTLEAHR 718 (1026)
Q Consensus 689 ~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~ 718 (1026)
+|++||++.|+|++|..+.
T Consensus 81 -----------~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 -----------FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred -----------CCcceEEEEEEHHHHHhhC
Confidence 7999999999999997654
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.5e-16 Score=147.72 Aligned_cols=101 Identities=28% Similarity=0.431 Sum_probs=88.3
Q ss_pred cc-eeEeeeccccceeEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCe-----eeEeeeecCCCCCeEeEEEEEEecC
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSI--TGSCDPYVEVKMGNY-----KGRTKHFEKRMNPEWNQVFAFSKER 342 (1026)
Q Consensus 271 g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~-----~~kT~~~~~t~nP~wne~f~f~v~~ 342 (1026)
|+ .+++.|.. ..+.|.|+|++|+||..++. .+.+||||+|++... ++||++++++.||+|||+|.|.+..
T Consensus 2 Gel~~sL~Y~~--~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~ 79 (138)
T cd08407 2 GEVLLSISYLP--AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPS 79 (138)
T ss_pred CEEEEEEEEeC--CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCH
Confidence 56 89999987 56899999999999999883 345899999998752 5689999999999999999999853
Q ss_pred --CCCCeEEEEEEeCCCCCCCceeEEEEEEccc
Q 001696 343 --IQSSMLEVFLKDKEMVGRDDYLGRVAFDLNE 373 (1026)
Q Consensus 343 --~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~ 373 (1026)
+....|.|+|||++.++++++||++.+++..
T Consensus 80 ~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 80 ELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred HHhCccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 4467899999999999999999999999865
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-15 Score=146.22 Aligned_cols=122 Identities=25% Similarity=0.429 Sum_probs=100.0
Q ss_pred EEEEEEEEEeEecCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCCcccceeEEEeeCC---------CcCeEEEEEEE
Q 001696 448 WYLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEP---------FEEQLFLTVED 518 (1026)
Q Consensus 448 ~~l~V~I~~a~~L~~~d~~~~~dpyV~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~---------~~~~L~i~V~d 518 (1026)
++|+|+|++|++|+.++..+.+||||+|.++++.++|+++ +++.||.|||.|.|.+... ....|.|+|||
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~-~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d 79 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVI-KETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFD 79 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeE-cCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEe
Confidence 3699999999999999999999999999999999999999 7999999999999975432 12479999999
Q ss_pred ccCCCCCceeEEEEE-eCcccccccCCCCccceeEEcccCCCCchhhhhhccccccceEEEEEEec
Q 001696 519 RVHASKDEVLGKISL-PLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFSSRVHLRVCLE 583 (1026)
Q Consensus 519 ~d~~~~d~~lG~~~i-~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~g~l~l~~~~~ 583 (1026)
++..++|++||++.+ ++..+... .......+|++|...+ ...|+|++++.+.
T Consensus 80 ~d~~~~d~~iG~~~i~~~~~~~~~-~~~~~~~~W~~L~~~~------------~~~Geil~~~~~~ 132 (135)
T cd04017 80 QDSVGKDEFLGRSVAKPLVKLDLE-EDFPPKLQWFPIYKGG------------QSAGELLAAFELI 132 (135)
T ss_pred CcCCCCCccceEEEeeeeeecccC-CCCCCCceEEEeecCC------------CchhheeEEeEEE
Confidence 999899999999987 44333322 2445688999998553 3579999988753
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-15 Score=145.07 Aligned_cols=114 Identities=21% Similarity=0.368 Sum_probs=99.2
Q ss_pred EEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeCC---CCEEEEEEEeCCCCCCCCccC
Q 001696 618 ILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDP---CTVITLGVFDNCHLGGGEKQN 694 (1026)
Q Consensus 618 v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~v~d~~~~~~~~~~~ 694 (1026)
|++|++|+. ..|.+||||+|.+++..++|++++++.||.|||.|.|++..+ ...|.|+|||++..+
T Consensus 2 vi~a~~L~~-----~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~------ 70 (127)
T cd08373 2 VVSLKNLPG-----LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG------ 70 (127)
T ss_pred eEEeeCCcc-----cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC------
Confidence 679999986 367899999999999999999999999999999999999764 568999999998864
Q ss_pred CCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEEeec
Q 001696 695 GSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTIF 749 (1026)
Q Consensus 695 ~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 749 (1026)
++++||++.++|+++..+.....|++|.... +....|+|+++++|.|.
T Consensus 71 -----~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 71 -----RNRLIGSATVSLQDLVSEGLLEVTEPLLDSN--GRPTGATISLEVSYQPP 118 (127)
T ss_pred -----CCceEEEEEEEhhHcccCCceEEEEeCcCCC--CCcccEEEEEEEEEeCC
Confidence 7899999999999999888889999997433 33335999999999764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=142.61 Aligned_cols=105 Identities=25% Similarity=0.377 Sum_probs=91.8
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCC----CCCeEEEEEEeCCCC
Q 001696 283 QMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERI----QSSMLEVFLKDKEMV 358 (1026)
Q Consensus 283 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~----~~~~L~v~V~d~~~~ 358 (1026)
+.+.|+|+|++|++|+ .|.+||||+|++++++++|++++++.||.|||+|.|.+..+ .+..|.|+|||++.+
T Consensus 2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred CcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 3468999999999998 56899999999999999999999999999999999997543 246899999999999
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCEEEEeec
Q 001696 359 GRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLED 393 (1026)
Q Consensus 359 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 393 (1026)
+++++||++.++|+++..... +.....|++|.+
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~--~~~~~~w~~L~~ 110 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPD--HAFLRKWLLLTD 110 (111)
T ss_pred ccCCccEEEEECCccccCCCC--CcceEEEEEeeC
Confidence 899999999999999976533 446679999976
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-15 Score=144.81 Aligned_cols=102 Identities=25% Similarity=0.373 Sum_probs=89.8
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE---CCEEEEeeeecCCCCceeecEEEEEeeC----CCCEEEEEEEeC
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKY---GQKWVRTRTILDTFNPKWNEQYTWEVYD----PCTVITLGVFDN 684 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~---g~~~~~T~~~~~t~~P~wne~~~~~v~~----~~~~l~i~v~d~ 684 (1026)
+.|.|.|++|+||+.+ +..+.+||||++.+ +....+|++++++.||.|||.|.|.+.. ....|.|+|||+
T Consensus 16 ~~L~v~v~~a~~L~~~---d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~ 92 (125)
T cd08386 16 STLTLKILKAVELPAK---DFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDY 92 (125)
T ss_pred CEEEEEEEEecCCCCc---cCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeC
Confidence 6899999999999987 66788999999998 4567999999999999999999998642 245799999999
Q ss_pred CCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeee
Q 001696 685 CHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 727 (1026)
+.++ ++++||.+.|+|+++..+.....||+|.
T Consensus 93 d~~~-----------~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 93 DRFS-----------RNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CCCc-----------CCcEeeEEEEecccccCCCCcceEEecC
Confidence 9865 7899999999999999888889999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-15 Score=140.03 Aligned_cols=97 Identities=22% Similarity=0.359 Sum_probs=85.0
Q ss_pred eEEEEEEEEeecCCCCCCC----CCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCC-CCCeEEEEEEeCCCCC
Q 001696 285 SYLYVRVVKAKDLPPSSIT----GSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERI-QSSMLEVFLKDKEMVG 359 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d~~----g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~L~v~V~d~~~~~ 359 (1026)
|+|.|+|++|++|++.+.. +.+||||+|++++.++||++++++.||+|||.|.|.+.+. ....|.|+|||++.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 5799999999999987632 3589999999999999999999999999999999998543 3458999999999999
Q ss_pred CCceeEEEEEEccccCCCCCCC
Q 001696 360 RDDYLGRVAFDLNEVPTRVPPD 381 (1026)
Q Consensus 360 ~d~~lG~~~i~l~~l~~~~~~~ 381 (1026)
+|++||++.++|.++..+....
T Consensus 81 ~dd~IG~~~l~L~~l~~~~~~~ 102 (108)
T cd04039 81 FNDYVATGSLSVQELLNAAPQP 102 (108)
T ss_pred CCcceEEEEEEHHHHHhhCCCC
Confidence 9999999999999998775543
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-15 Score=142.82 Aligned_cols=116 Identities=21% Similarity=0.346 Sum_probs=98.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCC--Cce
Q 001696 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMG-NYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGR--DDY 363 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~-~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~--d~~ 363 (1026)
|+|+|++|++|+..+..+.+||||++.++ .+.++|++++++.||.|||+|.|.+.. ...|.|+|||++.+++ +++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCce
Confidence 78999999999999988999999999997 568899999999999999999999965 5799999999998865 589
Q ss_pred eEEEEEEccccCCCCCCCCCCCCEEEEeecCCC--CCcccceEEEEE
Q 001696 364 LGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRG--EGKVRGQTMLAI 408 (1026)
Q Consensus 364 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~~G~i~l~~ 408 (1026)
||++.+++.++...... ...||+|..... .+...|+|.+++
T Consensus 80 lG~~~i~l~~l~~~~~~----~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 80 LGCVRIRANAVLPLKDT----GYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EeEEEEEHHHccccCCC----ccceeEeecCCCCCCceEeeEEEEEe
Confidence 99999999998754322 237999977654 345688888764
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=144.67 Aligned_cols=102 Identities=25% Similarity=0.388 Sum_probs=88.8
Q ss_pred ceEEEEEEEEecCCCCCccCC-CCCCcCcEEEEEEC-----CEEEEeeeecCCCCceeecEEEEEeeCC---CCEEEEEE
Q 001696 611 VGILEVGILGAQGLLPMKMKD-GRGSTDAYCIAKYG-----QKWVRTRTILDTFNPKWNEQYTWEVYDP---CTVITLGV 681 (1026)
Q Consensus 611 ~g~L~v~v~~a~~L~~~~~~~-~~~~~dpyv~v~~g-----~~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~v 681 (1026)
.|.|.|.|++|+||+.+ + ..+.+||||++.+. ....+|++++++.||.|||.|.|.+... ...|.|+|
T Consensus 13 ~~~L~V~v~~a~~L~~~---~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v 89 (123)
T cd08521 13 TGSLEVHIKECRNLAYA---DEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSV 89 (123)
T ss_pred CCEEEEEEEEecCCCCc---CCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 37899999999999987 4 56789999999873 1468999999999999999999998753 55799999
Q ss_pred EeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEee
Q 001696 682 FDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPL 726 (1026)
Q Consensus 682 ~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L 726 (1026)
||++.++ ++++||.+.|+|+++..+.....||+|
T Consensus 90 ~d~~~~~-----------~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 90 WHHDRFG-----------RNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EeCCCCc-----------CCceeeEEEEecccccccCCCccEEEC
Confidence 9998765 789999999999999777777999987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-15 Score=143.39 Aligned_cols=114 Identities=29% Similarity=0.464 Sum_probs=98.7
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC---eeeEeeeecCCCCCeEeEEEEEEecCC--CCC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSS-ITGSCDPYVEVKMGN---YKGRTKHFEKRMNPEWNQVFAFSKERI--QSS 346 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~---~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~ 346 (1026)
.+++.|+. ..+.|.|+|++|+||+..+ ..+.+||||+|++.+ ...+|++++++.||+|||+|.|.+... ...
T Consensus 4 ~~~l~y~~--~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~ 81 (123)
T cd08390 4 WFSVQYDL--EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRR 81 (123)
T ss_pred EEEEEECC--CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhccc
Confidence 78889987 5589999999999999988 678899999999843 467899999999999999999997542 346
Q ss_pred eEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeec
Q 001696 347 MLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLED 393 (1026)
Q Consensus 347 ~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 393 (1026)
.|.|+|||++..+++++||++.++|.++....... .|++|+.
T Consensus 82 ~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~-----~w~~L~~ 123 (123)
T cd08390 82 TLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGV-----VWRDLEP 123 (123)
T ss_pred EEEEEEEECCcCCCCcEEEEEEEeccceecCCCce-----EEEeCCC
Confidence 89999999999889999999999999998776554 8999863
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=150.95 Aligned_cols=116 Identities=25% Similarity=0.409 Sum_probs=97.5
Q ss_pred eeEeeecccc----------ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeEeeeecCCCCCeEeEEEE
Q 001696 273 RFTSTYDLVE----------QMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMG-----NYKGRTKHFEKRMNPEWNQVFA 337 (1026)
Q Consensus 273 ~~~~~y~~~~----------~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~ 337 (1026)
.+++.|.... ..+.|.|+|++|+||+..+..|.+||||+|.+. ..+++|++++++.||.|||+|.
T Consensus 5 ~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~ 84 (162)
T cd04020 5 KVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFV 84 (162)
T ss_pred EEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEE
Confidence 6777777633 458999999999999999988999999999984 2478999999999999999999
Q ss_pred EEec---CCCCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeec
Q 001696 338 FSKE---RIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLED 393 (1026)
Q Consensus 338 f~v~---~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 393 (1026)
|.+. +.....|.|+|||++.++++++||++.+++.++......+ .|+.+..
T Consensus 85 f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~-----~w~~~~~ 138 (162)
T cd04020 85 YDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAV-----DWMDSTG 138 (162)
T ss_pred EecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCcc-----ccccCCh
Confidence 9852 3335689999999999989999999999999987654433 8887764
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.3e-16 Score=143.03 Aligned_cols=99 Identities=28% Similarity=0.389 Sum_probs=86.6
Q ss_pred eEEEEEEEEecCCCCCccCCCC-CCcCcEEEEEEC---CEEEEeeeecCCCCceeecEEEEEeeCC----CCEEEEEEEe
Q 001696 612 GILEVGILGAQGLLPMKMKDGR-GSTDAYCIAKYG---QKWVRTRTILDTFNPKWNEQYTWEVYDP----CTVITLGVFD 683 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~-~~~dpyv~v~~g---~~~~~T~~~~~t~~P~wne~~~~~v~~~----~~~l~i~v~d 683 (1026)
|.|+|+|++|++|+.+ +.. +.+||||+|.+. ...++|+++++++||.|||.|.|.+..+ ...|.|+|||
T Consensus 1 G~L~V~v~~a~~L~~~---d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d 77 (111)
T cd04041 1 GVLVVTIHRATDLPKA---DFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWD 77 (111)
T ss_pred CEEEEEEEEeeCCCcc---cCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEe
Confidence 7899999999999987 556 899999999983 3568999999999999999999988653 5689999999
Q ss_pred CCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeee
Q 001696 684 NCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 727 (1026)
++.++ +|++||++.|+|++|... .+||++.
T Consensus 78 ~d~~~-----------~dd~lG~~~i~l~~l~~~---~~~~~~~ 107 (111)
T cd04041 78 SDRFT-----------ADDRLGRVEIDLKELIED---RNWMGRR 107 (111)
T ss_pred CCCCC-----------CCCcceEEEEEHHHHhcC---CCCCccc
Confidence 99865 789999999999999754 5899875
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.6e-17 Score=169.47 Aligned_cols=104 Identities=27% Similarity=0.535 Sum_probs=93.9
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEe-----CCceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCC
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDF-----LNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHER 76 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~-----~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~ 76 (1026)
.|+|+|.+|+||.++|-+|.+||||++.+ +..+++|++++.|+||+|||+|+|.+.+.+. ...|.|+|||||+
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~Dk--drRlsiEvWDWDr 258 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDK--DRRLSIEVWDWDR 258 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccc--cceeEEEEecccc
Confidence 58999999999999999999999999999 2368899999999999999999999988664 3689999999999
Q ss_pred CCCCCCccceeEEecCccccccCCceeEEeecccc
Q 001696 77 RPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKK 111 (1026)
Q Consensus 77 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 111 (1026)
.+ ++||+|...+.+++|...+ ...||.|-..
T Consensus 259 Ts--RNDFMGslSFgisEl~K~p--~~GWyKlLsq 289 (683)
T KOG0696|consen 259 TS--RNDFMGSLSFGISELQKAP--VDGWYKLLSQ 289 (683)
T ss_pred cc--cccccceecccHHHHhhcc--hhhHHHHhhh
Confidence 65 8999999999999999775 6889999765
|
|
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-15 Score=140.92 Aligned_cols=105 Identities=30% Similarity=0.515 Sum_probs=92.5
Q ss_pred EEEEEEEeEecCCCCC-CCCCCcEEEEEECCeEEEeeeecCCCCCCcc-cceeEEEeeCC--CcCeEEEEEEEccCCCCC
Q 001696 450 LRVNVIEAQDIVPNDR-NRLPEGFVKVQVGNQVLKTKICPTPTTNPLW-NEDLVFVAAEP--FEEQLFLTVEDRVHASKD 525 (1026)
Q Consensus 450 l~V~I~~a~~L~~~d~-~~~~dpyV~v~lg~~~~kT~~~~~~t~nP~w-ne~f~f~v~~~--~~~~L~i~V~d~d~~~~d 525 (1026)
|.|+|++|++|+.++. .+.+||||+++++++.+||+++ +++.||.| ||.|.|.+... .+..|.|+|||++..+++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~-~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~ 79 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVV-KKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAN 79 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEeccee-cCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCC
Confidence 5799999999998884 6789999999999999999999 79999999 99999998664 356899999999999999
Q ss_pred ceeEEEEEeCcccccccCCCCccceeEEccc
Q 001696 526 EVLGKISLPLHIFEKRLDHRPVHSRWFNLEK 556 (1026)
Q Consensus 526 ~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~ 556 (1026)
++||++.+++.++... ......+.||+|.+
T Consensus 80 ~~iG~~~~~l~~l~~~-~~~~~~~~w~~l~~ 109 (110)
T cd08688 80 DAIGKVYIDLNPLLLK-DSVSQISGWFPIYD 109 (110)
T ss_pred CceEEEEEeHHHhccc-CCccccCCeEEccc
Confidence 9999999999999864 23345889999975
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-15 Score=147.07 Aligned_cols=106 Identities=28% Similarity=0.474 Sum_probs=91.0
Q ss_pred eEEEEeecCCCccCCCCCCCCCEEEEEeC----CceeeeccCCCCCCcccceeEEEeccCCC------------CCccce
Q 001696 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFL----NQLSKTKTIPKNLNPVWNQKLLFDFDQTK------------SHNHLR 66 (1026)
Q Consensus 3 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~----~~~~~T~~~~~t~nP~Wne~f~f~~~~~~------------~~~~~~ 66 (1026)
|+|+|++|++|+.+ ..|.+||||+|+++ +.+++|++++++.||.|||+|.|.+.... ......
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 68999999999888 78899999999997 78899999999999999999999987651 223468
Q ss_pred EEEEEeeCCCCCCCCCccceeEEecCccccccCCceeEEeeccccc
Q 001696 67 IEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKW 112 (1026)
Q Consensus 67 L~~~V~d~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 112 (1026)
|.|+|||++.. +.++|||++.+++.++...+ ....||+|++++
T Consensus 80 l~i~V~d~~~~--~~~~~IG~~~i~l~~l~~~~-~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMV--SGDDFLGEVRIPLQGLQQAG-SHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcC--cCCcEEEEEEEehhhccCCC-cccceEecCCcC
Confidence 99999995543 47999999999999987554 378999999875
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=146.98 Aligned_cols=104 Identities=25% Similarity=0.349 Sum_probs=87.1
Q ss_pred EEEEEEEEecCCCCCccC-----------CCCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeCC--CCEEEE
Q 001696 613 ILEVGILGAQGLLPMKMK-----------DGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDP--CTVITL 679 (1026)
Q Consensus 613 ~L~v~v~~a~~L~~~~~~-----------~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~--~~~l~i 679 (1026)
.|.|+|++|++|+.++.. +..+.+||||+|.++++..||++++++.||+|||.|.|++..+ ...|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 378999999999998531 1235789999999999999999999999999999999998754 568999
Q ss_pred EEEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCce-------EeeeEeee
Q 001696 680 GVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRI-------YTHSYPLL 727 (1026)
Q Consensus 680 ~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~-------~~~~~~L~ 727 (1026)
+|||++..+ +|++||++.|+|.++..... -.+||.|.
T Consensus 81 ~v~D~d~~~-----------~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~ly 124 (151)
T cd04018 81 QIRDWDRVG-----------NDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLY 124 (151)
T ss_pred EEEECCCCC-----------CCCEEEEEEEeHHHhccCCccccCCccCceEEEee
Confidence 999999865 79999999999999865431 24677765
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.9e-15 Score=141.76 Aligned_cols=116 Identities=26% Similarity=0.414 Sum_probs=100.7
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCC--CCCeEEEEEEeCCCCCCCceeEEEE
Q 001696 291 VVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERI--QSSMLEVFLKDKEMVGRDDYLGRVA 368 (1026)
Q Consensus 291 v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~v~V~d~~~~~~d~~lG~~~ 368 (1026)
|++|++|+. ..|.+||||+|.+++.+++|++++++.||+|||+|.|.+... ....|.|+|||++..+++++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 689999988 678899999999999999999999999999999999998653 4689999999999998999999999
Q ss_pred EEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecccC
Q 001696 369 FDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGTQA 414 (1026)
Q Consensus 369 i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 414 (1026)
+++.++..+.... .|++|.+.++. ...|+|+++++|.+..
T Consensus 80 ~~l~~l~~~~~~~-----~~~~L~~~~~~-~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 80 VSLQDLVSEGLLE-----VTEPLLDSNGR-PTGATISLEVSYQPPD 119 (127)
T ss_pred EEhhHcccCCceE-----EEEeCcCCCCC-cccEEEEEEEEEeCCC
Confidence 9999998764433 89999876553 4579999999987654
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-15 Score=141.29 Aligned_cols=101 Identities=30% Similarity=0.464 Sum_probs=88.0
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeEeeeecCCCCCeEeEEEEEEecCC---CCCeEEEEEEeCCC
Q 001696 285 SYLYVRVVKAKDLPPSSIT-GSCDPYVEVKMGN---YKGRTKHFEKRMNPEWNQVFAFSKERI---QSSMLEVFLKDKEM 357 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~---~~~kT~~~~~t~nP~wne~f~f~v~~~---~~~~L~v~V~d~~~ 357 (1026)
|+|+|+|++|++|+..+.. +.+||||+|.+.+ ...+|++++++.||+|||+|.|.+... ....|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 5799999999999999987 8999999999853 368999999999999999999987543 35689999999999
Q ss_pred CCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeec
Q 001696 358 VGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLED 393 (1026)
Q Consensus 358 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 393 (1026)
+++|++||++.+++.++.... .|+++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~--------~~~~~~~ 108 (111)
T cd04041 81 FTADDRLGRVEIDLKELIEDR--------NWMGRRE 108 (111)
T ss_pred CCCCCcceEEEEEHHHHhcCC--------CCCcccc
Confidence 999999999999999998432 7887753
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.6e-15 Score=141.57 Aligned_cols=120 Identities=25% Similarity=0.318 Sum_probs=99.5
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC--eeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCC
Q 001696 285 SYLYVRVVKAKDLPPSS-ITGSCDPYVEVKMGN--YKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRD 361 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~--~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d 361 (1026)
|.|+|+|++|++|+..+ ..+.+||||++++++ ...+|++++++.||.|||.|.|.+.. ....|.|+|||++..+++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~-~~~~l~~~v~d~~~~~~d 80 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS-LTEPLNLTVYDFNDKRKD 80 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC-CCCEEEEEEEecCCCCCC
Confidence 68999999999999765 346789999999998 68999999999999999999999873 467999999999998899
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecc
Q 001696 362 DYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGT 412 (1026)
Q Consensus 362 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 412 (1026)
++||++.+++.++......+ ..|+.+.. .++..|+|++++.|.+
T Consensus 81 ~~iG~~~~~l~~l~~~~~~~----~~~~~~~~---~~k~~G~i~~~l~~~p 124 (124)
T cd04044 81 KLIGTAEFDLSSLLQNPEQE----NLTKNLLR---NGKPVGELNYDLRFFP 124 (124)
T ss_pred ceeEEEEEEHHHhccCcccc----Ccchhhhc---CCccceEEEEEEEeCC
Confidence 99999999999998764432 13444432 2356799999998753
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.1e-15 Score=142.86 Aligned_cols=116 Identities=23% Similarity=0.342 Sum_probs=93.5
Q ss_pred EEEEEEEecC--CCCCccCCCCCCcCcEEEEEE-----CCEEEEeeeecCCCCceeecEEEEEeeCC---------CCEE
Q 001696 614 LEVGILGAQG--LLPMKMKDGRGSTDAYCIAKY-----GQKWVRTRTILDTFNPKWNEQYTWEVYDP---------CTVI 677 (1026)
Q Consensus 614 L~v~v~~a~~--L~~~~~~~~~~~~dpyv~v~~-----g~~~~~T~~~~~t~~P~wne~~~~~v~~~---------~~~l 677 (1026)
..++|..|+| |+.. +..+.+||||++++ +.++.||+++++|+||+|||+|.|.|... ...|
T Consensus 4 ~el~i~~~~~~~l~~~---~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L 80 (155)
T cd08690 4 IELTIVRCIGIPLPSG---WNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGL 80 (155)
T ss_pred eEEEEEEeeccccCCC---cCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcE
Confidence 4456666666 6655 55778999999986 35689999999999999999999999654 3469
Q ss_pred EEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCc-cCcEEEEEEEE
Q 001696 678 TLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVK-KMGELQLAIRF 746 (1026)
Q Consensus 678 ~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~f 746 (1026)
.|+|||++.+. .+|++||++.|+|+.+..+.....|++|.. |.+ ..|.|+++++-
T Consensus 81 ~~~V~d~~~f~----------~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~----~~k~~Gg~l~v~ir~ 136 (155)
T cd08690 81 KFEVYHKGGFL----------RSDKLLGTAQVKLEPLETKCEIHESVDLMD----GRKATGGKLEVKVRL 136 (155)
T ss_pred EEEEEeCCCcc----------cCCCeeEEEEEEcccccccCcceEEEEhhh----CCCCcCCEEEEEEEe
Confidence 99999998753 369999999999999988877788999972 333 36899999885
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-15 Score=144.24 Aligned_cols=118 Identities=22% Similarity=0.295 Sum_probs=101.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeEeeeec-CCCCCeEeEEEEEEecCCC----CCeEEEEEEeCCCCCC
Q 001696 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGN-YKGRTKHFE-KRMNPEWNQVFAFSKERIQ----SSMLEVFLKDKEMVGR 360 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~~~~-~t~nP~wne~f~f~v~~~~----~~~L~v~V~d~~~~~~ 360 (1026)
|+|+|++|++|+..+..+.+||||+|++++ ++++|+++. ++.||.|||+|.|.+.... ...|.|+|||++.+++
T Consensus 2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~ 81 (125)
T cd04051 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLG 81 (125)
T ss_pred EEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCC
Confidence 789999999999988888999999999998 789999975 5899999999999987653 5789999999999889
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEE
Q 001696 361 DDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTML 406 (1026)
Q Consensus 361 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l 406 (1026)
+++||++.+++.++......+.+....||+|...++ +..|.|++
T Consensus 82 ~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g--~~~G~~~~ 125 (125)
T cd04051 82 DKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG--KPQGVLNF 125 (125)
T ss_pred CCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC--CcCeEEeC
Confidence 999999999999998776543334568999998664 57888864
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-15 Score=144.73 Aligned_cols=101 Identities=27% Similarity=0.326 Sum_probs=88.8
Q ss_pred cc-eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecC--
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKER-- 342 (1026)
Q Consensus 271 g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~-- 342 (1026)
|+ ++++.|.. ....|.|+|++|+||+..+..|.+||||+|++.+ .+.||++++++.||+|||+|.|.+..
T Consensus 2 G~i~~sL~Y~~--~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~ 79 (136)
T cd08406 2 GEILLSLSYLP--TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIV 79 (136)
T ss_pred cEEEEEEEEcC--CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHH
Confidence 45 88999987 5589999999999999999889999999999953 25689999999999999999999853
Q ss_pred CCCCeEEEEEEeCCCCCCCceeEEEEEEccc
Q 001696 343 IQSSMLEVFLKDKEMVGRDDYLGRVAFDLNE 373 (1026)
Q Consensus 343 ~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~ 373 (1026)
..+..|.|+|||++.++++++||++.|....
T Consensus 80 l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 80 LQDLSLRVTVAESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred hCCcEEEEEEEeCCCCCCCCeeEEEEECCCC
Confidence 4578999999999999999999999997654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=140.31 Aligned_cols=116 Identities=23% Similarity=0.432 Sum_probs=98.1
Q ss_pred eEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCee-eEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEE
Q 001696 285 SYLYVRVVKAKDLPPSSIT----------GSCDPYVEVKMGNYK-GRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLK 353 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d~~----------g~~dpyv~v~~~~~~-~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~ 353 (1026)
|.|+|+|++|++|...+.. |.+||||++.+++++ .+|++++++.||.|||+|.|.+.+ ...|.|.||
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~~v~ 81 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN--GRNLELTVF 81 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC--CCEEEEEEE
Confidence 6899999999999988752 579999999999865 699999999999999999999963 578999999
Q ss_pred eCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecc
Q 001696 354 DKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGT 412 (1026)
Q Consensus 354 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 412 (1026)
|++.++.+++||++.++|.++..... .....|++|.. .|+|++.+.+..
T Consensus 82 d~~~~~~~~~iG~~~i~l~~l~~~~~---~~~~~w~~L~~-------~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIGPDDFVANCTISFEDLIQRGS---GSFDLWVDLEP-------QGKLHVKIELKG 130 (132)
T ss_pred eCCCCCCCceEEEEEEEhHHhcccCC---CcccEEEEccC-------CcEEEEEEEEec
Confidence 99988899999999999999887311 12349999973 389999887653
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.4e-15 Score=146.04 Aligned_cols=131 Identities=24% Similarity=0.298 Sum_probs=105.1
Q ss_pred cceEEEEEEecccCchhhhhcccccCccccCCCccccccccccCCceEEEEEEEEEeEecCCCCCCCCCCcEEEEEE---
Q 001696 401 RGQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQV--- 477 (1026)
Q Consensus 401 ~G~i~l~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~r~~~~~~p~~~~l~V~I~~a~~L~~~d~~~~~dpyV~v~l--- 477 (1026)
+|+|.+++.|.+...+... ....+..+.|+|+|++|+||+..+..+.+||||+|++
T Consensus 1 ~G~l~~~l~y~~~~~~~~~---------------------~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~ 59 (162)
T cd04020 1 RGELKVALKYVPPESEGAL---------------------KSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPD 59 (162)
T ss_pred CceEEEEEEecCccccccc---------------------cccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcC
Confidence 4999999999886542111 0112345689999999999999998899999999998
Q ss_pred --CCeEEEeeeecCCCCCCcccceeEEEeeCC---CcCeEEEEEEEccCCCCCceeEEEEEeCcccccccCCCCccceeE
Q 001696 478 --GNQVLKTKICPTPTTNPLWNEDLVFVAAEP---FEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWF 552 (1026)
Q Consensus 478 --g~~~~kT~~~~~~t~nP~wne~f~f~v~~~---~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~ 552 (1026)
+.+.+||+++ +++.||.|||.|.|.+... .+..|.|+|||++.++++++||++.+++.++... .....|+
T Consensus 60 ~~~~~~~kT~vi-~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~----~~~~~w~ 134 (162)
T cd04020 60 KSKKSKQKTPVV-KKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSY----GQAVDWM 134 (162)
T ss_pred CCCCcceeCCcc-CCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccC----CCccccc
Confidence 3468899999 7999999999999985322 3458999999999988999999999999998644 2367898
Q ss_pred EcccC
Q 001696 553 NLEKF 557 (1026)
Q Consensus 553 ~L~~~ 557 (1026)
.+.+.
T Consensus 135 ~~~~~ 139 (162)
T cd04020 135 DSTGE 139 (162)
T ss_pred cCChH
Confidence 88754
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.9e-15 Score=142.74 Aligned_cols=92 Identities=33% Similarity=0.562 Sum_probs=84.6
Q ss_pred ceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCC
Q 001696 611 VGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGG 690 (1026)
Q Consensus 611 ~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 690 (1026)
+|.|+|.|++|+||+.. +. +.+||||+++++++.++|++++++.||.|||.|.|.+.++...|.|+|||++.++
T Consensus 1 ~G~L~V~Vi~a~nL~~~---d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~-- 74 (145)
T cd04038 1 LGLLKVRVVRGTNLAVR---DF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFS-- 74 (145)
T ss_pred CeEEEEEEEeeECCCCC---CC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCC--
Confidence 48999999999999876 44 7899999999999999999999999999999999999999889999999999875
Q ss_pred CccCCCCCCCCCeeEEEEEEcccccCC
Q 001696 691 EKQNGSSAVRDSRIGKVRIRLSTLEAH 717 (1026)
Q Consensus 691 ~~~~~~~~~~~~~lG~~~i~l~~l~~~ 717 (1026)
+|++||.+.++|.++...
T Consensus 75 ---------~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 75 ---------KDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred ---------CCCEEEEEEEEHHHhhhh
Confidence 789999999999998543
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.2e-15 Score=139.92 Aligned_cols=103 Identities=20% Similarity=0.263 Sum_probs=89.9
Q ss_pred ceEEEEEEEEecCCCCCccCC-CCCCcCcEEEEEE---CCEEEEeeeecCCCCceeecEEEEEeeCC---CCEEEEEEEe
Q 001696 611 VGILEVGILGAQGLLPMKMKD-GRGSTDAYCIAKY---GQKWVRTRTILDTFNPKWNEQYTWEVYDP---CTVITLGVFD 683 (1026)
Q Consensus 611 ~g~L~v~v~~a~~L~~~~~~~-~~~~~dpyv~v~~---g~~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~v~d 683 (1026)
.+.|.|.|++|+||+.+ + ..+.+||||++++ +....+|++++++.||.|||.|.|.+... ...|.|.|||
T Consensus 13 ~~~L~V~v~~a~~L~~~---~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d 89 (123)
T cd08390 13 EEQLTVSLIKARNLPPR---TKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYD 89 (123)
T ss_pred CCEEEEEEEEecCCCCc---cCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEE
Confidence 37899999999999987 4 4678999999998 34568999999999999999999998753 4579999999
Q ss_pred CCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeee
Q 001696 684 NCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 727 (1026)
++..+ ++++||++.|+|+++........|++|.
T Consensus 90 ~~~~~-----------~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 90 VDRFS-----------RHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred CCcCC-----------CCcEEEEEEEeccceecCCCceEEEeCC
Confidence 98754 7899999999999998888788999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-15 Score=144.33 Aligned_cols=108 Identities=24% Similarity=0.368 Sum_probs=93.0
Q ss_pred EEEEEEEeEecCCCCCCC--------------CCCcEEEEEECCeEEEeeeecCCCCCCcccceeEEEeeCC-CcCeEEE
Q 001696 450 LRVNVIEAQDIVPNDRNR--------------LPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEP-FEEQLFL 514 (1026)
Q Consensus 450 l~V~I~~a~~L~~~d~~~--------------~~dpyV~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~-~~~~L~i 514 (1026)
|.|+|++|++|+.+|.++ .+||||+|.++++..+|+++ +++.||+|||.|.|.+..+ ..+.|.|
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~-~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVK-KNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceE-cCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 789999999999988543 68999999999999999999 7999999999999997654 4569999
Q ss_pred EEEEccCCCCCceeEEEEEeCcccccccCCC---CccceeEEcccCC
Q 001696 515 TVEDRVHASKDEVLGKISLPLHIFEKRLDHR---PVHSRWFNLEKFG 558 (1026)
Q Consensus 515 ~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~---~~~~~w~~L~~~~ 558 (1026)
+|||+|..++|++||++.+++.++....... ...++|+.|+++.
T Consensus 81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~ 127 (151)
T cd04018 81 QIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSP 127 (151)
T ss_pred EEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCc
Confidence 9999999899999999999999987642211 2567999999885
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.8e-15 Score=139.57 Aligned_cols=95 Identities=25% Similarity=0.367 Sum_probs=84.2
Q ss_pred CCCceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeC--CCCEEEEEEEeCC
Q 001696 608 KPPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYD--PCTVITLGVFDNC 685 (1026)
Q Consensus 608 ~~~~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~--~~~~l~i~v~d~~ 685 (1026)
...+|.|+|.|++|+||+. +..+.+||||+|+++++.+||++++++.||+|||.|.|.... ....|.|+|||++
T Consensus 24 ~~~~~~L~V~V~~A~~L~~----d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d 99 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG----DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD 99 (127)
T ss_pred cCCcEEEEEEEEECCCCCc----CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC
Confidence 3567999999999999974 567889999999999999999999999999999999998644 3678999999999
Q ss_pred CCCCCCccCCCCCCCCCeeEEEEEEcccccCC
Q 001696 686 HLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAH 717 (1026)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~ 717 (1026)
.++ +|++||++.++|....++
T Consensus 100 ~~s-----------~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 100 NGW-----------DDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCC-----------CCCeeEEEEEEecCCcee
Confidence 865 799999999999987654
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=138.71 Aligned_cols=118 Identities=25% Similarity=0.409 Sum_probs=100.3
Q ss_pred EEEEEEEEeEecCCCCCCCCCCcEEEEEECC---eEEEeeeecCCCCCCcccceeEEEeeCCCcCeEEEEEEEccCCCCC
Q 001696 449 YLRVNVIEAQDIVPNDRNRLPEGFVKVQVGN---QVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASKD 525 (1026)
Q Consensus 449 ~l~V~I~~a~~L~~~d~~~~~dpyV~v~lg~---~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d 525 (1026)
.++|+|++|++|+..+..+.+||||++.+++ +.++|+++ +++.||.|||.|.|.+.......|.|+|||++..+++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~-~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTI-YDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEe-cCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence 5899999999999999889999999999854 46899999 6899999999999999876667899999999988899
Q ss_pred ceeEEEEEeCcccccccCCCCccceeEEcccCCCCchhhhhhccccccceEEEEEEecC
Q 001696 526 EVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFSSRVHLRVCLEG 584 (1026)
Q Consensus 526 ~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~g~l~l~~~~~~ 584 (1026)
++||++.++|..+... .+......|++|... |++++++.+.+
T Consensus 81 ~~iG~~~i~l~~~~~~-~~~~~~~~w~~l~~~----------------g~i~l~~~~~~ 122 (126)
T cd04043 81 DLCGRASLKLDPKRFG-DDGLPREIWLDLDTQ----------------GRLLLRVSMEG 122 (126)
T ss_pred ceEEEEEEecCHHHcC-CCCCCceEEEEcCCC----------------CeEEEEEEEee
Confidence 9999999999976532 113456789999753 88888888755
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=138.58 Aligned_cols=118 Identities=24% Similarity=0.437 Sum_probs=98.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCc
Q 001696 286 YLYVRVVKAKDLPPSSITGSCDPYVEVKMGNY---KGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDD 362 (1026)
Q Consensus 286 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~---~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 362 (1026)
.|+|+|++|++|+..+..+.+||||++.+.+. ..+|++++++.||.|||+|.|.+.......|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 58999999999999998899999999998753 579999999999999999999987755678999999999988999
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecc
Q 001696 363 YLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGT 412 (1026)
Q Consensus 363 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 412 (1026)
+||++.++|..+..... +.....|++|.. .|+|++.+.+..
T Consensus 82 ~iG~~~i~l~~~~~~~~--~~~~~~w~~l~~-------~g~i~l~~~~~~ 122 (126)
T cd04043 82 LCGRASLKLDPKRFGDD--GLPREIWLDLDT-------QGRLLLRVSMEG 122 (126)
T ss_pred eEEEEEEecCHHHcCCC--CCCceEEEEcCC-------CCeEEEEEEEee
Confidence 99999999987644320 112348999974 388888887654
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.2e-15 Score=173.22 Aligned_cols=126 Identities=24% Similarity=0.380 Sum_probs=107.8
Q ss_pred eEEEEEEEEecCCCCCccC------------------------------CC---------CCCcCcEEEEEECCE-EEEe
Q 001696 612 GILEVGILGAQGLLPMKMK------------------------------DG---------RGSTDAYCIAKYGQK-WVRT 651 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~------------------------------~~---------~~~~dpyv~v~~g~~-~~~T 651 (1026)
|.|.++|++|++|++|+.. .+ .+++||||+|.++++ ..||
T Consensus 14 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~RT 93 (868)
T PLN03008 14 GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLART 93 (868)
T ss_pred cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceeeE
Confidence 7889999999988864310 01 357899999999876 5799
Q ss_pred eeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCC
Q 001696 652 RTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHP 731 (1026)
Q Consensus 652 ~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~ 731 (1026)
++++++.||+|||.|.|.+.++...|+|.|+|+|.++ +++||.+.|+|.+|..|.....|++|.....
T Consensus 94 rVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g------------aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~ 161 (868)
T PLN03008 94 RVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG------------AQIIGTAKIPVRDIASGERISGWFPVLGASG 161 (868)
T ss_pred EeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC------------CceeEEEEEEHHHcCCCCceEEEEEccccCC
Confidence 9999999999999999999999889999999999875 5899999999999999999999999997655
Q ss_pred CCCccCcEEEEEEEEeec
Q 001696 732 HGVKKMGELQLAIRFTIF 749 (1026)
Q Consensus 732 ~g~~~~G~i~l~~~f~~~ 749 (1026)
+-.+..|+|+|+++|.|.
T Consensus 162 kp~k~~~kl~v~lqf~pv 179 (868)
T PLN03008 162 KPPKAETAIFIDMKFTPF 179 (868)
T ss_pred CCCCCCcEEEEEEEEEEc
Confidence 444556899999999874
|
|
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.1e-15 Score=140.85 Aligned_cols=88 Identities=26% Similarity=0.393 Sum_probs=77.6
Q ss_pred EEEEEEEEeEecCCCCCCCCCCcEEEEEE---CCe--EEEeeeecCCCCCCcccceeEEEeeCC--CcCeEEEEEEEccC
Q 001696 449 YLRVNVIEAQDIVPNDRNRLPEGFVKVQV---GNQ--VLKTKICPTPTTNPLWNEDLVFVAAEP--FEEQLFLTVEDRVH 521 (1026)
Q Consensus 449 ~l~V~I~~a~~L~~~d~~~~~dpyV~v~l---g~~--~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~d~ 521 (1026)
.|.|+|++|+||+..+..+.+||||+|++ +.+ +.||+++ +++.||.|||+|.|.+... .+..|.|+|||++.
T Consensus 16 ~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~-k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~ 94 (136)
T cd08406 16 RLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVK-RDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTE 94 (136)
T ss_pred EEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccc-cCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCC
Confidence 59999999999999998899999999999 222 5688888 7999999999999998653 56789999999999
Q ss_pred CCCCceeEEEEEeCcc
Q 001696 522 ASKDEVLGKISLPLHI 537 (1026)
Q Consensus 522 ~~~d~~lG~~~i~l~~ 537 (1026)
.+++++||++.|....
T Consensus 95 ~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 95 DGKTPNVGHVIIGPAA 110 (136)
T ss_pred CCCCCeeEEEEECCCC
Confidence 9999999999998764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.8e-15 Score=141.48 Aligned_cols=113 Identities=26% Similarity=0.303 Sum_probs=95.1
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-EEEEeeeec-CCCCceeecEEEEEeeCC-----CCEEEEEEEeCC
Q 001696 613 ILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ-KWVRTRTIL-DTFNPKWNEQYTWEVYDP-----CTVITLGVFDNC 685 (1026)
Q Consensus 613 ~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~-~~~~T~~~~-~t~~P~wne~~~~~v~~~-----~~~l~i~v~d~~ 685 (1026)
.|+|.|++|++|+.. +..+.+||||+|.+++ .+.+|+++. ++.||.|||.|.|.+..+ ...|.|+|||++
T Consensus 1 ~L~V~V~sA~~L~~~---~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~ 77 (125)
T cd04051 1 TLEITIISAEDLKNV---NLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER 77 (125)
T ss_pred CEEEEEEEcccCCCC---CcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC
Confidence 378999999999987 5678999999999988 889999985 589999999999999877 578999999998
Q ss_pred CCCCCCccCCCCCCCCCeeEEEEEEcccccCCce-----EeeeEeeeecCCCCCccCcEEEE
Q 001696 686 HLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRI-----YTHSYPLLVLHPHGVKKMGELQL 742 (1026)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~g~~~~G~i~l 742 (1026)
.++ ++++||.+.|+|.++..+.. ...||+|.... | +.+|.|++
T Consensus 78 ~~~-----------~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g-~~~G~~~~ 125 (125)
T cd04051 78 PSL-----------GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--G-KPQGVLNF 125 (125)
T ss_pred CCC-----------CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--C-CcCeEEeC
Confidence 754 78999999999999976543 47899998433 3 34588763
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.9e-15 Score=140.14 Aligned_cols=102 Identities=28% Similarity=0.433 Sum_probs=91.8
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecC-CCCceeecEEEEEeeCC----CCEEEEEEEeCCC
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILD-TFNPKWNEQYTWEVYDP----CTVITLGVFDNCH 686 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~-t~~P~wne~~~~~v~~~----~~~l~i~v~d~~~ 686 (1026)
|.|+|.|++|+||+.+ +..+.+||||+|.+++...+|+++.+ +.||.|||.|.|.+..+ ...|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~---~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDT---DFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCC---CCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 6899999999999987 55689999999999999999999874 89999999999999887 5689999999987
Q ss_pred CCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeee
Q 001696 687 LGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 687 ~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 727 (1026)
++ ++++||++.|+|.++..+.....||+|.
T Consensus 78 ~~-----------~d~~iG~~~i~l~~l~~~~~~~~~~~l~ 107 (124)
T cd04049 78 FS-----------DDDFIGEATIHLKGLFEEGVEPGTAELV 107 (124)
T ss_pred CC-----------CCCeEEEEEEEhHHhhhCCCCcCceEee
Confidence 64 7899999999999997777778999997
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=139.33 Aligned_cols=89 Identities=27% Similarity=0.293 Sum_probs=76.8
Q ss_pred EEEEEEEEEeEecCCCCC--CCCCCcEEEEEECC-----eEEEeeeecCCCCCCcccceeEEEeeCC--CcCeEEEEEEE
Q 001696 448 WYLRVNVIEAQDIVPNDR--NRLPEGFVKVQVGN-----QVLKTKICPTPTTNPLWNEDLVFVAAEP--FEEQLFLTVED 518 (1026)
Q Consensus 448 ~~l~V~I~~a~~L~~~d~--~~~~dpyV~v~lg~-----~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d 518 (1026)
+.|.|.|++|+||..++. .+.+||||+|++.. .+.||+++ +++.||+|||.|.|.+... .+..|.|+|||
T Consensus 15 ~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~-k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d 93 (138)
T cd08407 15 NRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRA-KHKINPVWNEMIMFELPSELLAASSVELEVLN 93 (138)
T ss_pred CeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceecccee-eCCCCCccccEEEEECCHHHhCccEEEEEEEe
Confidence 369999999999999883 34589999999933 25689998 7999999999999998654 45689999999
Q ss_pred ccCCCCCceeEEEEEeCcc
Q 001696 519 RVHASKDEVLGKISLPLHI 537 (1026)
Q Consensus 519 ~d~~~~d~~lG~~~i~l~~ 537 (1026)
++.++++++||++.+++..
T Consensus 94 ~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 94 QDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred CCCCcCcceeceEEecCcC
Confidence 9999999999999999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.59 E-value=8e-15 Score=140.53 Aligned_cols=120 Identities=18% Similarity=0.273 Sum_probs=97.2
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEeCCce-eeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCC-
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQL-SKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPI- 79 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~-~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~- 79 (1026)
.|.|.|++|++|++++ +|||.|.+++.. .||+++.++.||.|+|+|.|...+.- ..|.|.||+.++...
T Consensus 12 sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~----~~l~v~v~k~~~~~~~ 82 (146)
T cd04013 12 SLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPV----SVITVNLYRESDKKKK 82 (146)
T ss_pred EEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcc----cEEEEEEEEccCcccc
Confidence 4889999999998764 799999999977 59999999999999999999866543 579999987332221
Q ss_pred -CCCccceeEEecCccccccCCceeEEeecccccccc--------ccccccceeEEecCCC
Q 001696 80 -PGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLS--------SVKGEVGLKIYISPQS 131 (1026)
Q Consensus 80 -~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~--------~~~G~l~l~~~~~~~~ 131 (1026)
.++++||++.||++++... .....||+|.+..... ...+.|++++.|.+..
T Consensus 83 ~~~~~~IG~V~Ip~~~l~~~-~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 83 KDKSQLIGTVNIPVTDVSSR-QFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred ccCCcEEEEEEEEHHHhcCC-CcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 2678999999999999854 4589999998865443 4457999999987653
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=136.51 Aligned_cols=100 Identities=20% Similarity=0.356 Sum_probs=85.5
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCC-CCeEeEEEEEEecCC-CC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRM-NPEWNQVFAFSKERI-QS 345 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~-nP~wne~f~f~v~~~-~~ 345 (1026)
.++++|.. ..+.|+|+|++|+||+++...+.+||||+|++-. .++||+++++|. ||+|||+|.|.+... .+
T Consensus 4 ~~sL~Y~p--~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~ 81 (135)
T cd08692 4 QLGTCFQA--VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHG 81 (135)
T ss_pred EEEeeecC--cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhhe
Confidence 67889976 6799999999999999886666789999999853 368999999995 699999999998543 24
Q ss_pred CeEEEEEEeCCCCCCCceeEEEEEEcccc
Q 001696 346 SMLEVFLKDKEMVGRDDYLGRVAFDLNEV 374 (1026)
Q Consensus 346 ~~L~v~V~d~~~~~~d~~lG~~~i~l~~l 374 (1026)
-.|.|+|||++..+++++||++.+.....
T Consensus 82 v~l~v~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 82 IQFLIKLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred eEEEEEEEeCCCCcCCceEEEEEECCccC
Confidence 58899999999999999999999998764
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-14 Score=137.34 Aligned_cols=102 Identities=32% Similarity=0.416 Sum_probs=91.4
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-EEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCC
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ-KWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGG 690 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~-~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 690 (1026)
|.|+|.|++|++|+.. +..+.+||||+|.+++ ...+|++++++.||.|||.|.|.+..+...|.|+|||++.++
T Consensus 1 g~L~V~Vi~a~~L~~~---d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~-- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNL---EGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVG-- 75 (120)
T ss_pred CeEEEEEEeeECCCCc---cCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCC--
Confidence 6899999999999987 5678999999999976 569999999999999999999999888889999999999865
Q ss_pred CccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeee
Q 001696 691 EKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLV 728 (1026)
Q Consensus 691 ~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 728 (1026)
+|++||.+.++|.++..+ ....||-|..
T Consensus 76 ---------~d~~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 76 ---------KDRSLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred ---------CCCeeeEEEEeHHHhhCC-CCCceEEecC
Confidence 789999999999999776 4488998874
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.2e-15 Score=142.89 Aligned_cols=114 Identities=23% Similarity=0.409 Sum_probs=95.5
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecCC--CC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKERI--QS 345 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~~--~~ 345 (1026)
++++.|+. ..+.|.|+|++|+||++.+..|.+||||+|.+.+ .+.+|++++++.||+|||+|.|.+... ..
T Consensus 3 ~~~l~y~~--~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~ 80 (133)
T cd08384 3 LVSLMYNT--QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAK 80 (133)
T ss_pred EEEEEEcC--CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCC
Confidence 57888877 5699999999999999999889999999999963 367999999999999999999998543 35
Q ss_pred CeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCC
Q 001696 346 SMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRR 395 (1026)
Q Consensus 346 ~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 395 (1026)
..|.|+|||++..+++++||++.+++..... . ...|+++....
T Consensus 81 ~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~--~-----~~~W~~~l~~~ 123 (133)
T cd08384 81 KTLEITVWDKDIGKSNDYIGGLQLGINAKGE--R-----LRHWLDCLKNP 123 (133)
T ss_pred CEEEEEEEeCCCCCCccEEEEEEEecCCCCc--h-----HHHHHHHHhCC
Confidence 6899999999998899999999999975221 1 23788776543
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-14 Score=139.60 Aligned_cols=123 Identities=16% Similarity=0.293 Sum_probs=96.9
Q ss_pred eEEEEeecCC--CccCCCCCCCCCEEEEEe-----CCceeeeccCCCCCCcccceeEEEeccCCC-----CCccceEEEE
Q 001696 3 LVVEVVDAYD--LMPKDGEGSASPFAEVDF-----LNQLSKTKTIPKNLNPVWNQKLLFDFDQTK-----SHNHLRIEVS 70 (1026)
Q Consensus 3 L~V~v~~a~~--L~~~~~~g~~dpyv~v~~-----~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~-----~~~~~~L~~~ 70 (1026)
..++|..|++ |+..+.++.+||||++++ ..++.+|+++++|+||+|||+|.|.+.... ......|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4577777777 667777889999999997 237899999999999999999999986542 2334679999
Q ss_pred EeeCCCCCCCCCccceeEEecCccccccCCceeEEeeccccccccccccccceeEEecC
Q 001696 71 IYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYISP 129 (1026)
Q Consensus 71 V~d~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 129 (1026)
|||.+. +...|++||++.++|+.+..... ...|++|... +..+-|+|++++..-.
T Consensus 84 V~d~~~-f~~~D~~iG~~~i~L~~l~~~~~-~~~~~~L~~~--~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGG-FLRSDKLLGTAQVKLEPLETKCE-IHESVDLMDG--RKATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCC-cccCCCeeEEEEEEcccccccCc-ceEEEEhhhC--CCCcCCEEEEEEEecC
Confidence 999443 23479999999999999876654 5669998742 3356799999988654
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.6e-14 Score=135.75 Aligned_cols=118 Identities=25% Similarity=0.390 Sum_probs=98.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------eeeEeeeecCCCCCeE-eEEEEEEecCCCCCeEEEE
Q 001696 286 YLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-------------YKGRTKHFEKRMNPEW-NQVFAFSKERIQSSMLEVF 351 (1026)
Q Consensus 286 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-------------~~~kT~~~~~t~nP~w-ne~f~f~v~~~~~~~L~v~ 351 (1026)
.+.|++++|+||+ ++..|.+||||++.+.+ ++++|+++++++||+| ||+|.|.+.. +..|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEE
Confidence 4679999999998 67789999999999953 3689999999999999 9999999853 4689999
Q ss_pred EEeCCCCCC---CceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEE
Q 001696 352 LKDKEMVGR---DDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAI 408 (1026)
Q Consensus 352 V~d~~~~~~---d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~ 408 (1026)
|||++..++ +++||++.+++.++....... ....||+|......+.+.|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~--~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIG--DQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCC--ceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999865433 799999999999997664322 2458999998877778899998765
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.7e-16 Score=159.12 Aligned_cols=226 Identities=20% Similarity=0.279 Sum_probs=177.0
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEe---cCCC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSK---ERIQ 344 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v---~~~~ 344 (1026)
.|.+.|+. ....+..+|.+|++|++++.++..|||++..+.. .+.+|++..+++||.|+|+..... ++..
T Consensus 83 ~~~~~y~~--~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~ 160 (362)
T KOG1013|consen 83 EFELLYDS--ESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTH 160 (362)
T ss_pred hhhhhhhh--hhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhh
Confidence 67777876 4578899999999999999999999999999976 257888999999999999876652 2234
Q ss_pred CCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCC-----CcccceEEEEEEecccCchhhh
Q 001696 345 SSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGE-----GKVRGQTMLAIWMGTQADEAFA 419 (1026)
Q Consensus 345 ~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-----~~~~G~i~l~~~~~~~~d~~~~ 419 (1026)
...+++.|.|.+.+..++++|+..+++..+.....+. ...|+.-..+... -+.+|.|.+++.|....
T Consensus 161 ~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~---f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~----- 232 (362)
T KOG1013|consen 161 LKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKS---FNICLEKSLPSERADRDEDEERGAILISLAYSSTT----- 232 (362)
T ss_pred hhhhheeeccCcccccccCcccchhhhhccChhhcch---hhhhhhccCCcccccccchhhccceeeeeccCcCC-----
Confidence 5678899999999999999999999998886654321 2244443333111 13567777777654332
Q ss_pred hcccccCccccCCCccccccccccCCceEEEEEEEEEeEecCCCCCCCCCCcEEEEEEC---C--eEEEeeeecCCCCCC
Q 001696 420 EAWHSDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVG---N--QVLKTKICPTPTTNP 494 (1026)
Q Consensus 420 ~~~~~d~~~~~~~~~~~~r~~~~~~p~~~~l~V~I~~a~~L~~~d~~~~~dpyV~v~lg---~--~~~kT~~~~~~t~nP 494 (1026)
..+.|+++.|..|..+|.++.+||||+.++. + -+++|.+. +++.+|
T Consensus 233 ----------------------------~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~-K~t~~p 283 (362)
T KOG1013|consen 233 ----------------------------PGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQK-KKTLNP 283 (362)
T ss_pred ----------------------------CceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcch-hccCCc
Confidence 2489999999999999999999999999982 2 35678887 799999
Q ss_pred cccceeEEEeeCC--CcCeEEEEEEEccCCCCCceeEEEEEeCcc
Q 001696 495 LWNEDLVFVAAEP--FEEQLFLTVEDRVHASKDEVLGKISLPLHI 537 (1026)
Q Consensus 495 ~wne~f~f~v~~~--~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~ 537 (1026)
.||+.|.|.+... ....+.|.|+|++....++++|-+...+..
T Consensus 284 ~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~r 328 (362)
T KOG1013|consen 284 EFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGYR 328 (362)
T ss_pred cccccccccCCccchhcceEEEeecccCCCcCccCCCcccccccc
Confidence 9999999987543 566899999999988889999988766543
|
|
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-14 Score=135.15 Aligned_cols=111 Identities=31% Similarity=0.448 Sum_probs=94.9
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-EEEEeeeecCCCCceeecEEEEEeeC-CCCEEEEEEEeCCCCCCCC
Q 001696 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ-KWVRTRTILDTFNPKWNEQYTWEVYD-PCTVITLGVFDNCHLGGGE 691 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~-~~~~T~~~~~t~~P~wne~~~~~v~~-~~~~l~i~v~d~~~~~~~~ 691 (1026)
|+|.|++|++|+.. +..+.+||||+|.+++ ..++|+++.++.||.|||.|.|.+.. ....|.|+|||++..+
T Consensus 1 l~v~vi~a~~L~~~---~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~--- 74 (115)
T cd04040 1 LTVDVISAENLPSA---DRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGG--- 74 (115)
T ss_pred CEEEEEeeeCCCCC---CCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCC---
Confidence 57999999999987 5577899999999965 55899999999999999999999987 4678999999998754
Q ss_pred ccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEE
Q 001696 692 KQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQ 741 (1026)
Q Consensus 692 ~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~ 741 (1026)
++++||++.+++.++..+.....|++|.. .|..+.|.+.
T Consensus 75 --------~~~~iG~~~~~l~~l~~~~~~~~~~~L~~---~g~~~~~~~~ 113 (115)
T cd04040 75 --------KDDLLGSAYIDLSDLEPEETTELTLPLDG---QGGGKLGAVF 113 (115)
T ss_pred --------CCCceEEEEEEHHHcCCCCcEEEEEECcC---CCCccCceEE
Confidence 78999999999999999888899999973 3334457664
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-14 Score=134.92 Aligned_cols=112 Identities=29% Similarity=0.486 Sum_probs=88.3
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-EEEeeeecCCCCceeecEEEEEeeCC---CCEEEEEEEeCCCCCC
Q 001696 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQK-WVRTRTILDTFNPKWNEQYTWEVYDP---CTVITLGVFDNCHLGG 689 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~-~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~v~d~~~~~~ 689 (1026)
|+|.|++|+||+.. |.+||||+++++++ +++|+++++ .||.|||+|.|.+... ...|.|.+||.+..+
T Consensus 2 L~v~vi~a~~l~~~------~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~- 73 (117)
T cd08383 2 LRLRILEAKNLPSK------GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD- 73 (117)
T ss_pred eEEEEEEecCCCcC------CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC-
Confidence 78999999999863 68999999999875 589999999 9999999999999873 346888888876532
Q ss_pred CCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEE
Q 001696 690 GEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRF 746 (1026)
Q Consensus 690 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 746 (1026)
++..+|++.|. .+..+.....||+|...+.. .+..|+|+|+++|
T Consensus 74 ----------~~~~~g~v~l~--~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~ 117 (117)
T cd08383 74 ----------RDIVIGKVALS--KLDLGQGKDEWFPLTPVDPD-SEVQGSVRLRARY 117 (117)
T ss_pred ----------CeeEEEEEEec--CcCCCCcceeEEECccCCCC-CCcCceEEEEEEC
Confidence 56677776555 44446667999999865542 3447999999976
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-14 Score=139.42 Aligned_cols=114 Identities=19% Similarity=0.361 Sum_probs=95.2
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeEeeeecCCCCCeEeEEEEEEec--CCC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN------YKGRTKHFEKRMNPEWNQVFAFSKE--RIQ 344 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~------~~~kT~~~~~t~nP~wne~f~f~v~--~~~ 344 (1026)
.+++.|+. ..+.|.|+|++|+||+.++..|.+||||++.+.+ .++||++++++.||+|||+|.|.+. ++.
T Consensus 5 ~~sL~Y~~--~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~ 82 (138)
T cd08408 5 LLGLEYNA--LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLS 82 (138)
T ss_pred EEEeEEcC--CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhC
Confidence 78889987 5699999999999999999889999999999953 2569999999999999999999985 345
Q ss_pred CCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecC
Q 001696 345 SSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDR 394 (1026)
Q Consensus 345 ~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 394 (1026)
+..|.|+|||.+.++++++||++.+++....... ..+|+.+...
T Consensus 83 ~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~~------~~hW~~~l~~ 126 (138)
T cd08408 83 EVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEEE------EEHWNEMKES 126 (138)
T ss_pred ccEEEEEEEECCCCCCCcEEEEEEECCcCCCchH------HHHHHHHHhC
Confidence 6799999999999999999999999887543211 1267776553
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-14 Score=138.41 Aligned_cols=104 Identities=25% Similarity=0.448 Sum_probs=91.5
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeEeeeecCCCCCeEeEEEEEEecCC--
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-------YKGRTKHFEKRMNPEWNQVFAFSKERI-- 343 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-------~~~kT~~~~~t~nP~wne~f~f~v~~~-- 343 (1026)
.+++.|+. ..+.|.|+|++|++|+..+..|.+||||+|.+.+ .+++|+++++|.||+|||+|.|.+...
T Consensus 6 ~~~l~y~~--~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~ 83 (133)
T cd04009 6 TVKAYYRA--SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQC 83 (133)
T ss_pred EEEEEEcC--CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhc
Confidence 67788866 5689999999999999998889999999999963 468999999999999999999998542
Q ss_pred --CCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCC
Q 001696 344 --QSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRV 378 (1026)
Q Consensus 344 --~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~ 378 (1026)
....|.|+|||++.++++++||++.++|.++..-.
T Consensus 84 ~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~ 120 (133)
T cd04009 84 SVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGVE 120 (133)
T ss_pred ccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCccc
Confidence 35689999999999988999999999999998544
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-14 Score=138.92 Aligned_cols=102 Identities=27% Similarity=0.518 Sum_probs=89.0
Q ss_pred cc-eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eeeEeeeecCCCCCeEeEEEEEEec--C
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMG--N---YKGRTKHFEKRMNPEWNQVFAFSKE--R 342 (1026)
Q Consensus 271 g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~--~---~~~kT~~~~~t~nP~wne~f~f~v~--~ 342 (1026)
|+ .+++.|+. ..+.|.|+|++|+||+..+..|.+||||+|.+. + .+.+|++++++.||.|||+|.|.+. .
T Consensus 2 G~l~~sl~y~~--~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~ 79 (136)
T cd08405 2 GELLLSLCYNP--TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLER 79 (136)
T ss_pred cEEEEEEEEcC--CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHH
Confidence 44 78899987 458999999999999998888999999999983 2 2578999999999999999999874 3
Q ss_pred CCCCeEEEEEEeCCCCCCCceeEEEEEEcccc
Q 001696 343 IQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEV 374 (1026)
Q Consensus 343 ~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l 374 (1026)
.....|.|+|||++.++++++||++.+++.+.
T Consensus 80 ~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 80 LRETTLIITVMDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred hCCCEEEEEEEECCCCCCCcEeEEEEECCccC
Confidence 33568999999999999999999999999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.57 E-value=6e-15 Score=142.28 Aligned_cols=115 Identities=17% Similarity=0.395 Sum_probs=93.4
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecC--CCC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKER--IQS 345 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~--~~~ 345 (1026)
.+++.|.. ..+.|.|+|++|++|+..+..|.+||||+|.+.+ .+++|++++++.||.|||+|.|.+.. ...
T Consensus 4 ~~~l~y~~--~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~ 81 (135)
T cd08410 4 LLSLNYLP--SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELEN 81 (135)
T ss_pred EEEEEECC--CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCC
Confidence 78899976 5589999999999999999889999999999832 35789999999999999999999843 334
Q ss_pred CeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCC
Q 001696 346 SMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRR 395 (1026)
Q Consensus 346 ~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 395 (1026)
..|.|+|||++..+++++||++.|........ ....|+.|....
T Consensus 82 ~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~------~~~~W~~l~~~~ 125 (135)
T cd08410 82 VSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPS------ETNHWRRMLNSQ 125 (135)
T ss_pred CEEEEEEEeCCCCCCCcEEEEEEEcCccCCch------HHHHHHHHHhCC
Confidence 57999999999999999999998765433321 123687777653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.5e-15 Score=143.08 Aligned_cols=114 Identities=24% Similarity=0.428 Sum_probs=95.4
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecC--CCC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKER--IQS 345 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~--~~~ 345 (1026)
.+++.|+. ..+.|.|+|++|++|+..+..|.+||||+|.+.+ .+.+|++++++.||.|||+|.|.+.. ...
T Consensus 5 ~~~l~y~~--~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~ 82 (136)
T cd08404 5 LLSLCYQP--TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELED 82 (136)
T ss_pred EEEEEEeC--CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCC
Confidence 78888876 4589999999999999999899999999999853 25789999999999999999999753 235
Q ss_pred CeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCC
Q 001696 346 SMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRR 395 (1026)
Q Consensus 346 ~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 395 (1026)
..|.|+|||++.++++++||++.+++... ... ...|+.|....
T Consensus 83 ~~l~~~v~d~d~~~~~~~iG~~~~~~~~~--~~~-----~~~w~~l~~~~ 125 (136)
T cd08404 83 ISVEFLVLDSDRVTKNEVIGRLVLGPKAS--GSG-----GHHWKEVCNPP 125 (136)
T ss_pred CEEEEEEEECCCCCCCccEEEEEECCcCC--Cch-----HHHHHHHHhCC
Confidence 67999999999999999999999999872 221 23788887654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-14 Score=138.83 Aligned_cols=115 Identities=27% Similarity=0.456 Sum_probs=95.2
Q ss_pred cc-eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecC--
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKER-- 342 (1026)
Q Consensus 271 g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~-- 342 (1026)
|+ .+++.|.. ..+.|.|+|++|++|+.++..|.+||||+|.+.+ .+++|++++++.||.|||+|.|.+..
T Consensus 2 G~l~~~l~y~~--~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~ 79 (136)
T cd08402 2 GDICFSLRYVP--TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQ 79 (136)
T ss_pred cEEEEEeEEcC--CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHH
Confidence 45 78899987 5689999999999999999899999999999952 35789999999999999999999753
Q ss_pred CCCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecC
Q 001696 343 IQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDR 394 (1026)
Q Consensus 343 ~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 394 (1026)
.....|.|+|||++.++++++||++.+++..... . ...|+++...
T Consensus 80 l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~~--~-----~~~W~~~~~~ 124 (136)
T cd08402 80 IQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGA--E-----LRHWSDMLAS 124 (136)
T ss_pred hCCCEEEEEEEeCCCCCCCceeEEEEECCccCCh--H-----HHHHHHHHhC
Confidence 2345899999999999999999999999976422 1 2267776654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-14 Score=135.78 Aligned_cols=115 Identities=25% Similarity=0.408 Sum_probs=89.4
Q ss_pred eEEEEeecCCCccCCCCCCCCCEEEEEeCCc-eeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCCCC
Q 001696 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLNQ-LSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIPG 81 (1026)
Q Consensus 3 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~ 81 (1026)
|.|+|++|+||+.. |.+||||+|+++++ .++|+++.+ .||+|||+|.|.+...+ .....|.|.+||.+. ...
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~-~~~~~l~i~v~d~~~--~~~ 74 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPD-VTFFTLSFYNKDKRS--KDR 74 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCcc-ccEEEEEEEEEeccc--CCC
Confidence 78999999999865 78999999999874 579999988 99999999999987643 223578888888332 235
Q ss_pred CccceeEEecCccccccCCceeEEeeccccccccccccccceeEEe
Q 001696 82 RHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYI 127 (1026)
Q Consensus 82 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 127 (1026)
+.++|++.|. .+.. +.....||+|+++.......|+|++++.|
T Consensus 75 ~~~~g~v~l~--~~~~-~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 75 DIVIGKVALS--KLDL-GQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred eeEEEEEEec--CcCC-CCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 5667765554 4433 33478999999877667789999999875
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-14 Score=137.83 Aligned_cols=102 Identities=29% Similarity=0.430 Sum_probs=89.2
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-----CEEEEeeeecCCCCceeecEEEEEeeCC--CCEEEEEEEeC
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG-----QKWVRTRTILDTFNPKWNEQYTWEVYDP--CTVITLGVFDN 684 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g-----~~~~~T~~~~~t~~P~wne~~~~~v~~~--~~~l~i~v~d~ 684 (1026)
+.|+|.|++|++|+.. +..+.+||||+|.+. ...++|++++++.||.|||.|.|.+... ...|.|+|||+
T Consensus 13 ~~l~v~i~~a~nL~~~---~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~ 89 (131)
T cd04026 13 NKLTVEVREAKNLIPM---DPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDW 89 (131)
T ss_pred CEEEEEEEEeeCCCCc---CCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEEC
Confidence 6899999999999986 556789999999985 3679999999999999999999998764 56799999999
Q ss_pred CCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeee
Q 001696 685 CHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLV 728 (1026)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 728 (1026)
+.++ ++++||++.++|+++... ....||+|.+
T Consensus 90 ~~~~-----------~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 90 DRTT-----------RNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred CCCC-----------CcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 8754 789999999999999755 5688999974
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.8e-15 Score=142.56 Aligned_cols=115 Identities=20% Similarity=0.350 Sum_probs=94.1
Q ss_pred cc-eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEec--C
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKE--R 342 (1026)
Q Consensus 271 g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~--~ 342 (1026)
|+ ++++.|+. ..+.|.|+|++|+||+..+ .+.+||||+|.+.+ .+++|++++++.||+|||+|.|.+. +
T Consensus 2 G~i~~sl~y~~--~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~ 78 (137)
T cd08409 2 GDIQISLTYNP--TLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQ 78 (137)
T ss_pred cEEEEEEEECC--CCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHH
Confidence 45 88999987 5689999999999999988 77899999999864 3568999999999999999999984 3
Q ss_pred CCCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeec
Q 001696 343 IQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLED 393 (1026)
Q Consensus 343 ~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 393 (1026)
.....|.|+|||.+..+++++||++.+.......+...+ .|..+..
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~-----hW~~~~~ 124 (137)
T cd08409 79 LDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELE-----HWNDMLS 124 (137)
T ss_pred hCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHH-----HHHHHHh
Confidence 445789999999999889999999999865444332222 5666554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-14 Score=139.60 Aligned_cols=99 Identities=29% Similarity=0.539 Sum_probs=87.0
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----------------------------eeEeeeecCCCCCeEe
Q 001696 283 QMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNY-----------------------------KGRTKHFEKRMNPEWN 333 (1026)
Q Consensus 283 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-----------------------------~~kT~~~~~t~nP~wn 333 (1026)
+.+.|.|+|++|++|.++|..|.+||||+|.+.+. .++|++++++.||.||
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~Wn 105 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWN 105 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccc
Confidence 56899999999999999999999999999998642 3689999999999999
Q ss_pred EEEEEEecCCCCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 001696 334 QVFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRL 391 (1026)
Q Consensus 334 e~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 391 (1026)
|+|.|.+..+....|.|+|||++ +++||++.+++.++... .. ..||+|
T Consensus 106 E~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~-~~-----d~W~~L 153 (153)
T cd08676 106 ETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSC-GL-----DSWFKL 153 (153)
T ss_pred cEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCC-CC-----CCeEeC
Confidence 99999997766689999999987 89999999999999832 22 389986
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-14 Score=135.89 Aligned_cols=105 Identities=26% Similarity=0.373 Sum_probs=93.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecC-CCCCeEeEEEEEEecCC---CCCeEEEEEEeCCCCCC
Q 001696 285 SYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEK-RMNPEWNQVFAFSKERI---QSSMLEVFLKDKEMVGR 360 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~---~~~~L~v~V~d~~~~~~ 360 (1026)
|.|.|+|++|++|+..+..+.+||||+|++++...+|+++++ +.||.|||+|.|.+... ....|.|+|||.+.+++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 479999999999999888889999999999998889998875 89999999999999766 35789999999999989
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCEEEEeecC
Q 001696 361 DDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDR 394 (1026)
Q Consensus 361 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 394 (1026)
+++||++.+++.++......+ .|+.|...
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~-----~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEP-----GTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCc-----CceEeecc
Confidence 999999999999998765443 89998875
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-14 Score=135.70 Aligned_cols=93 Identities=27% Similarity=0.314 Sum_probs=82.8
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecC-CCCCeEEEEEEeCCCCCCC
Q 001696 283 QMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKER-IQSSMLEVFLKDKEMVGRD 361 (1026)
Q Consensus 283 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~-~~~~~L~v~V~d~~~~~~d 361 (1026)
.++.|.|+|++|++|+. +..+.+||||+|.+++++++|++++++.||+|||+|.|.... .....|.|+|||++.+++|
T Consensus 26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~d 104 (127)
T cd04032 26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDD 104 (127)
T ss_pred CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCC
Confidence 45899999999999984 667889999999999999999999999999999999997433 3467999999999999999
Q ss_pred ceeEEEEEEccccCC
Q 001696 362 DYLGRVAFDLNEVPT 376 (1026)
Q Consensus 362 ~~lG~~~i~l~~l~~ 376 (1026)
++||++.++|.....
T Consensus 105 d~IG~~~i~l~~~~~ 119 (127)
T cd04032 105 DLLGTCSVVPEAGVH 119 (127)
T ss_pred CeeEEEEEEecCCce
Confidence 999999999997664
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-14 Score=138.05 Aligned_cols=103 Identities=34% Similarity=0.546 Sum_probs=90.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeeeEeeeecCCCCCeEeEEEEEEecCC---------------CCCe
Q 001696 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMG----NYKGRTKHFEKRMNPEWNQVFAFSKERI---------------QSSM 347 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~----~~~~kT~~~~~t~nP~wne~f~f~v~~~---------------~~~~ 347 (1026)
|.|+|++|++|+.+ ..|.+||||+|.++ +.+++|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 78899999999998 6689999999999999999999997654 4578
Q ss_pred EEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCC
Q 001696 348 LEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRR 395 (1026)
Q Consensus 348 L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 395 (1026)
|.|+|||++..+++++||++.+++.++....... .||+|....
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~-----~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQ-----AWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCccc-----ceEecCCcC
Confidence 9999999999889999999999999987554433 999999875
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-14 Score=137.50 Aligned_cols=91 Identities=25% Similarity=0.365 Sum_probs=80.5
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-------CEEEEeeeecCCCCceeecEEEEEeeCC-----CCEEEE
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG-------QKWVRTRTILDTFNPKWNEQYTWEVYDP-----CTVITL 679 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g-------~~~~~T~~~~~t~~P~wne~~~~~v~~~-----~~~l~i 679 (1026)
+.|+|.|++|++|+.+ +..|.+||||+|.+. ....||+++++++||+|||.|.|++... ...|.|
T Consensus 16 ~~L~V~Vi~A~~L~~~---~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~ 92 (133)
T cd04009 16 QSLRVEILNARNLLPL---DSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLF 92 (133)
T ss_pred CEEEEEEEEeeCCCCc---CCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEE
Confidence 6899999999999987 567899999999884 3479999999999999999999999752 457999
Q ss_pred EEEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccC
Q 001696 680 GVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEA 716 (1026)
Q Consensus 680 ~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~ 716 (1026)
+|||++.++ ++++||++.|+|++|..
T Consensus 93 ~V~d~d~~~-----------~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 93 TVKDYDLLG-----------SNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEecCCCC-----------CCcEeEEEEEeHHHCCc
Confidence 999999865 79999999999999864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-14 Score=137.95 Aligned_cols=92 Identities=32% Similarity=0.528 Sum_probs=85.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCcee
Q 001696 285 SYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYL 364 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~l 364 (1026)
|.|+|+|++|++|+..+. +.+||||++++++++.+|++++++.||+|||+|.|.+.++ ...|.|+|||++.+++|++|
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd~i 79 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDDSM 79 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCCEE
Confidence 689999999999998887 8899999999999999999999999999999999999777 67899999999999999999
Q ss_pred EEEEEEccccCCCC
Q 001696 365 GRVAFDLNEVPTRV 378 (1026)
Q Consensus 365 G~~~i~l~~l~~~~ 378 (1026)
|++.+++.++....
T Consensus 80 G~a~i~l~~l~~~~ 93 (145)
T cd04038 80 GEAEIDLEPLVEAA 93 (145)
T ss_pred EEEEEEHHHhhhhh
Confidence 99999999987653
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.1e-14 Score=133.23 Aligned_cols=104 Identities=29% Similarity=0.446 Sum_probs=92.6
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCce
Q 001696 285 SYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNY-KGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDY 363 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 363 (1026)
|.|+|+|++|++|+..+..+.+||||+|.+++. ..+|++++++.||.|||+|.|.+... ...|.|+|||++.+++|++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~~ 79 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDRS 79 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCCe
Confidence 478999999999999998899999999999874 68999999999999999999998665 4689999999999999999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCEEEEeecCC
Q 001696 364 LGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRR 395 (1026)
Q Consensus 364 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 395 (1026)
||++.+++.++.... .+ .||.|.+.+
T Consensus 80 IG~~~~~l~~l~~~~-~~-----~~~~~~~~~ 105 (120)
T cd04045 80 LGSVEINVSDLIKKN-ED-----GKYVEYDDE 105 (120)
T ss_pred eeEEEEeHHHhhCCC-CC-----ceEEecCCC
Confidence 999999999998763 33 799888765
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-14 Score=139.98 Aligned_cols=100 Identities=21% Similarity=0.237 Sum_probs=85.9
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC--C---EEEEeeeecCCCCceeecEEEEEeeC---CCCEEEEEEEe
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG--Q---KWVRTRTILDTFNPKWNEQYTWEVYD---PCTVITLGVFD 683 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g--~---~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~v~d 683 (1026)
+.|.|.|++|+||+.+ +..|.+||||++++. + .+.||++++++.||.|||.|.|.+.. ....|.|+|||
T Consensus 15 ~~L~V~vi~a~~L~~~---d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d 91 (136)
T cd08404 15 NRLTVVVLKARHLPKM---DVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLD 91 (136)
T ss_pred CeEEEEEEEeeCCCcc---ccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence 6899999999999987 667899999999883 3 25789999999999999999999874 35579999999
Q ss_pred CCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeee
Q 001696 684 NCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 727 (1026)
++.++ ++++||++.|++... +....+|++|.
T Consensus 92 ~d~~~-----------~~~~iG~~~~~~~~~--~~~~~~w~~l~ 122 (136)
T cd08404 92 SDRVT-----------KNEVIGRLVLGPKAS--GSGGHHWKEVC 122 (136)
T ss_pred CCCCC-----------CCccEEEEEECCcCC--CchHHHHHHHH
Confidence 99865 789999999999993 44568999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.5e-14 Score=132.11 Aligned_cols=91 Identities=19% Similarity=0.327 Sum_probs=76.0
Q ss_pred eEEEEEEEEEeEecCCCCCCCCCCcEEEEEE---CC--eEEEeeeecCCCC-CCcccceeEEEeeCC-CcCeEEEEEEEc
Q 001696 447 LWYLRVNVIEAQDIVPNDRNRLPEGFVKVQV---GN--QVLKTKICPTPTT-NPLWNEDLVFVAAEP-FEEQLFLTVEDR 519 (1026)
Q Consensus 447 ~~~l~V~I~~a~~L~~~d~~~~~dpyV~v~l---g~--~~~kT~~~~~~t~-nP~wne~f~f~v~~~-~~~~L~i~V~d~ 519 (1026)
.+.|+|.|++|+||+.+...+.+||||+|++ ++ .+.||+++ ++|. ||.|||+|.|.+... .+-.|.|+|||+
T Consensus 13 ~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~-k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~ 91 (135)
T cd08692 13 NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLV-KSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSR 91 (135)
T ss_pred CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccE-ECCCCCceecceEEEeCCchhheeEEEEEEEeC
Confidence 3479999999999998866677899999998 22 36789988 6774 699999999998765 334788999999
Q ss_pred cCCCCCceeEEEEEeCccc
Q 001696 520 VHASKDEVLGKISLPLHIF 538 (1026)
Q Consensus 520 d~~~~d~~lG~~~i~l~~l 538 (1026)
+..+++++||++.+.....
T Consensus 92 ~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 92 SSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred CCCcCCceEEEEEECCccC
Confidence 8888999999999999763
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.9e-14 Score=132.95 Aligned_cols=116 Identities=23% Similarity=0.320 Sum_probs=93.5
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-EEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCCC
Q 001696 613 ILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQK-WVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGE 691 (1026)
Q Consensus 613 ~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~-~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 691 (1026)
.|.|+|++|+ |... +..+.+||||+|+++++ ..+|++++++.||.|||.|.|.+. ....|.|+|||++.++
T Consensus 3 ~L~V~i~~a~-l~~~---~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~--- 74 (125)
T cd04021 3 QLQITVESAK-LKSN---SKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLK--- 74 (125)
T ss_pred eEEEEEEeeE-CCCC---CcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCC---
Confidence 5889999998 5443 44778999999999887 899999999999999999999985 4568999999999864
Q ss_pred ccCCCCCCCCCeeEEEEEEcccccCCc---e--EeeeEeeeecCCCCCccCcEEEEEE
Q 001696 692 KQNGSSAVRDSRIGKVRIRLSTLEAHR---I--YTHSYPLLVLHPHGVKKMGELQLAI 744 (1026)
Q Consensus 692 ~~~~~~~~~~~~lG~~~i~l~~l~~~~---~--~~~~~~L~~~~~~g~~~~G~i~l~~ 744 (1026)
.+++||++.++|+++..+. . +..|++|........+..|.|.+++
T Consensus 75 --------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 --------ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred --------CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 7999999999999985432 1 3468999854421334569988765
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.7e-14 Score=135.83 Aligned_cols=114 Identities=30% Similarity=0.534 Sum_probs=98.0
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecCC-CCC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKERI-QSS 346 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~ 346 (1026)
.+++.|.. +.|+|+|++|++|+..+..+.+||||+|.+.+ ..++|++++++.||.|||+|.|.+... ...
T Consensus 5 ~~~~~~~~----~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~ 80 (131)
T cd04026 5 YLKISVKD----NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDR 80 (131)
T ss_pred EEEEEECC----CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCC
Confidence 66777754 88999999999999988888999999999963 578999999999999999999998653 346
Q ss_pred eEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCC
Q 001696 347 MLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRG 396 (1026)
Q Consensus 347 ~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 396 (1026)
.|.|+|||++..+++++||++.+++.++... .. ..||+|.+...
T Consensus 81 ~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~-----~~w~~L~~~~~ 124 (131)
T cd04026 81 RLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PV-----DGWYKLLNQEE 124 (131)
T ss_pred EEEEEEEECCCCCCcceeEEEEEeHHHhCcC-cc-----CceEECcCccc
Confidence 8999999999888999999999999999854 22 38999987653
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.2e-14 Score=137.51 Aligned_cols=102 Identities=28% Similarity=0.541 Sum_probs=89.4
Q ss_pred cCCceEEEEEEEEEeEecCCCCCCCCCCcEEEEEECC-----------------------------eEEEeeeecCCCCC
Q 001696 443 VSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVGN-----------------------------QVLKTKICPTPTTN 493 (1026)
Q Consensus 443 ~~p~~~~l~V~I~~a~~L~~~d~~~~~dpyV~v~lg~-----------------------------~~~kT~~~~~~t~n 493 (1026)
..|..+.|+|+|++|++|...|.++.+||||+|.++. +.++|+++ +++.|
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~-~~tln 101 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVK-PQTLN 101 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEeccee-cCCCC
Confidence 3567889999999999999999999999999999953 24789998 79999
Q ss_pred CcccceeEEEeeCCCcCeEEEEEEEccCCCCCceeEEEEEeCcccccccCCCCccceeEEc
Q 001696 494 PLWNEDLVFVAAEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNL 554 (1026)
Q Consensus 494 P~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L 554 (1026)
|.|||.|.|.+.+.....|.|+|||++ +++||++.+++.++... ....||+|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~-----~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSC-----GLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCC-----CCCCeEeC
Confidence 999999999998776779999999996 89999999999998732 36899986
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-14 Score=138.66 Aligned_cols=102 Identities=21% Similarity=0.307 Sum_probs=86.8
Q ss_pred CceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-----CEEEEeeeecCCCCceeecEEEEEeeCC---CCEEEEEE
Q 001696 610 PVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG-----QKWVRTRTILDTFNPKWNEQYTWEVYDP---CTVITLGV 681 (1026)
Q Consensus 610 ~~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g-----~~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~v 681 (1026)
..|.|.|+|++|+||+++ +..|.+||||+|.+. ....+|++++++.||.|||.|.|.+..+ ...|.|+|
T Consensus 11 ~~~~L~V~Vi~a~~L~~~---d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V 87 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAM---DANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV 87 (133)
T ss_pred CCCEEEEEEEEEcCCCCc---CCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence 348999999999999987 667899999999984 2358999999999999999999998753 45799999
Q ss_pred EeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeee
Q 001696 682 FDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 682 ~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 727 (1026)
||++..+ ++++||.+.|++... +....+||++.
T Consensus 88 ~d~d~~~-----------~~~~lG~~~i~l~~~--~~~~~~W~~~l 120 (133)
T cd08384 88 WDKDIGK-----------SNDYIGGLQLGINAK--GERLRHWLDCL 120 (133)
T ss_pred EeCCCCC-----------CccEEEEEEEecCCC--CchHHHHHHHH
Confidence 9998754 789999999999863 44458899886
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.4e-14 Score=131.61 Aligned_cols=112 Identities=28% Similarity=0.464 Sum_probs=95.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCceeE
Q 001696 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNY-KGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLG 365 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG 365 (1026)
|+|+|++|++|+..+..+.+||||+|.+++. .++|+++.++.||.|||+|.|.+.......|.|+|||++..+++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 5799999999999888889999999999764 579999999999999999999987655678999999999988999999
Q ss_pred EEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEE
Q 001696 366 RVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTM 405 (1026)
Q Consensus 366 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~ 405 (1026)
++.+++.++..+...+ .|++|....+ ...|.+.
T Consensus 81 ~~~~~l~~l~~~~~~~-----~~~~L~~~g~--~~~~~~~ 113 (115)
T cd04040 81 SAYIDLSDLEPEETTE-----LTLPLDGQGG--GKLGAVF 113 (115)
T ss_pred EEEEEHHHcCCCCcEE-----EEEECcCCCC--ccCceEE
Confidence 9999999988764443 8999986543 3456654
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=131.08 Aligned_cols=120 Identities=24% Similarity=0.295 Sum_probs=97.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCcee
Q 001696 286 YLYVRVVKAKDLPPSSITGSCDPYVEVKMGNY-KGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYL 364 (1026)
Q Consensus 286 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~l 364 (1026)
.|.|+|++|+ |...+..+.+||||+|+++++ ..+|++++++.||.|||+|.|.+.. ...|.|+|||++..+.+++|
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~~i 79 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADVLL 79 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCcEE
Confidence 6899999999 555555788999999999987 8999999999999999999999864 46899999999999999999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeecCCC-CCcccceEEEEE
Q 001696 365 GRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRG-EGKVRGQTMLAI 408 (1026)
Q Consensus 365 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~~G~i~l~~ 408 (1026)
|++.++|.++.............|++|..... .+...|+|.+.+
T Consensus 80 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 80 GEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 99999999997654322222235899986552 335789988764
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-14 Score=139.74 Aligned_cols=115 Identities=28% Similarity=0.435 Sum_probs=97.4
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----eeEeeeecCCCCCeEeEEEEEEecCC--CC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNY-----KGRTKHFEKRMNPEWNQVFAFSKERI--QS 345 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-----~~kT~~~~~t~nP~wne~f~f~v~~~--~~ 345 (1026)
++++.|+. ..+.|.|+|++|+||+..+..+.+||||++++.+. +++|+++.++.||.|||+|.|.+... ..
T Consensus 4 ~~~l~y~~--~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~ 81 (134)
T cd00276 4 LLSLSYLP--TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEE 81 (134)
T ss_pred EEEEEeeC--CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCC
Confidence 78888876 45899999999999999888889999999998652 56899999999999999999998654 25
Q ss_pred CeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCC
Q 001696 346 SMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRG 396 (1026)
Q Consensus 346 ~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 396 (1026)
..|.|+|||.+..+++++||++.+++.+ .+... ..|++|....+
T Consensus 82 ~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~-----~~W~~l~~~~~ 125 (134)
T cd00276 82 VSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEEL-----EHWNEMLASPR 125 (134)
T ss_pred cEEEEEEEecCCCCCCceeEEEEECCCC--CCcHH-----HHHHHHHhCCC
Confidence 7899999999998899999999999998 22222 38999987643
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.6e-14 Score=133.95 Aligned_cols=92 Identities=28% Similarity=0.561 Sum_probs=83.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCee--eEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCce
Q 001696 286 YLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYK--GRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDY 363 (1026)
Q Consensus 286 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 363 (1026)
+|+|+|++|++|+..+..|.+||||+|.+++.. .+|++++++.||.|||+|.|.+..+....|.|+|||++.+++|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 378999999999999998999999999999864 578889999999999999999876667899999999999999999
Q ss_pred eEEEEEEccccCCC
Q 001696 364 LGRVAFDLNEVPTR 377 (1026)
Q Consensus 364 lG~~~i~l~~l~~~ 377 (1026)
||++.+++.+....
T Consensus 81 iG~~~i~l~~~~~~ 94 (124)
T cd04037 81 IGETVIDLEDRFFS 94 (124)
T ss_pred eEEEEEeecccccc
Confidence 99999999987653
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-14 Score=138.52 Aligned_cols=114 Identities=24% Similarity=0.394 Sum_probs=93.4
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecC--CCC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKER--IQS 345 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~--~~~ 345 (1026)
.|++.|.. ..+.|+|+|++|++|++++..|.+||||+|.+.+ .+.+|++++++.||.|||+|.|.+.. ...
T Consensus 4 ~~~~~y~~--~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~ 81 (134)
T cd08403 4 MFSLCYLP--TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDN 81 (134)
T ss_pred EEEEEEcC--CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCC
Confidence 78889987 5699999999999999999999999999999842 25789999999999999999998743 334
Q ss_pred CeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCC
Q 001696 346 SMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRR 395 (1026)
Q Consensus 346 ~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 395 (1026)
..|.|+|||++.++++++||++.+++.....+ ...|+.+....
T Consensus 82 ~~l~~~v~d~~~~~~~~~IG~~~l~~~~~~~~-------~~~w~~~~~~~ 124 (134)
T cd08403 82 VSLIIAVVDYDRVGHNELIGVCRVGPNADGQG-------REHWNEMLANP 124 (134)
T ss_pred CEEEEEEEECCCCCCCceeEEEEECCCCCCch-------HHHHHHHHHCC
Confidence 57999999999999999999999987733211 12677665543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.9e-14 Score=137.69 Aligned_cols=102 Identities=21% Similarity=0.314 Sum_probs=86.3
Q ss_pred ceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeeeecCCCCceeecEEEEEeeC---CCCEEEEEEE
Q 001696 611 VGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ-----KWVRTRTILDTFNPKWNEQYTWEVYD---PCTVITLGVF 682 (1026)
Q Consensus 611 ~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~-----~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~v~ 682 (1026)
.+.|.|.|++|+||+++ + .+.+||||++.+.+ .+.||++++++.||.|||.|.|.|.. ....|.|+|+
T Consensus 14 ~~~L~V~V~~a~nL~~~---~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~ 89 (137)
T cd08409 14 LNRLTVVVLRARGLRQL---D-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVM 89 (137)
T ss_pred CCeEEEEEEEecCCCcc---c-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEE
Confidence 37899999999999987 5 67899999998732 35799999999999999999999963 2357999999
Q ss_pred eCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeee
Q 001696 683 DNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 683 d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 727 (1026)
|.+.++ ++++||++.|+......+...++|+.+.
T Consensus 90 ~~~~~~-----------~~~~lG~v~ig~~~~~~~~~~~hW~~~~ 123 (137)
T cd08409 90 QSGGVR-----------KSKLLGRVVLGPFMYARGKELEHWNDML 123 (137)
T ss_pred eCCCCC-----------CcceEEEEEECCcccCCChHHHHHHHHH
Confidence 998754 7899999999987777676678888876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-14 Score=160.03 Aligned_cols=125 Identities=29% Similarity=0.481 Sum_probs=110.1
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEeCCceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCC---
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRP--- 78 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~--- 78 (1026)
+++++|++|.+|..+|..|.+||||.+.+++.+++|+++...+||+|||.|.|.+.+.. ..|.+.|||.|+..
T Consensus 296 kitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnst----drikvrvwded~dlksk 371 (1283)
T KOG1011|consen 296 KITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNST----DRIKVRVWDEDNDLKSK 371 (1283)
T ss_pred eeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCC----ceeEEEEecCcccHHHH
Confidence 57899999999999999999999999999999999999999999999999999999876 58999999966542
Q ss_pred ------CCCCccceeEEecCccccccCCceeEEeeccccccccccccccceeEEecCCCCC
Q 001696 79 ------IPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYISPQSET 133 (1026)
Q Consensus 79 ------~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~~~ 133 (1026)
..+|||||+..|.+..+... .+.||.|+++..++.++|-|++.|...-.+..
T Consensus 372 lrqkl~resddflgqtvievrtlsge---mdvwynlekrtdksavsgairlhisveikgee 429 (1283)
T KOG1011|consen 372 LRQKLTRESDDFLGQTVIEVRTLSGE---MDVWYNLEKRTDKSAVSGAIRLHISVEIKGEE 429 (1283)
T ss_pred HHHHhhhcccccccceeEEEEecccc---hhhhcchhhccchhhccceEEEEEEEEEcCcc
Confidence 23589999999997776643 78999999999999999999999887655443
|
|
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-13 Score=133.82 Aligned_cols=103 Identities=25% Similarity=0.326 Sum_probs=85.4
Q ss_pred EEEEEEEEEeEecCCCCCCCCCCcEEEEEEC--C---eEEEeeeecCCCCCCcccceeEEEeeCC--CcCeEEEEEEEcc
Q 001696 448 WYLRVNVIEAQDIVPNDRNRLPEGFVKVQVG--N---QVLKTKICPTPTTNPLWNEDLVFVAAEP--FEEQLFLTVEDRV 520 (1026)
Q Consensus 448 ~~l~V~I~~a~~L~~~d~~~~~dpyV~v~lg--~---~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~d 520 (1026)
+.|+|+|++|++|+.++..+.+||||+|+++ + ..++|+++ +++.||.|||.|.|.+... ....|.|+|||++
T Consensus 15 ~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~-~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~ 93 (136)
T cd08402 15 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIK-KRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYD 93 (136)
T ss_pred CeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccce-eCCCCCcccceEEEECCHHHhCCCEEEEEEEeCC
Confidence 4699999999999999988999999999993 2 35789988 7999999999999998643 2347999999999
Q ss_pred CCCCCceeEEEEEeCcccccccCCCCccceeEEcccC
Q 001696 521 HASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKF 557 (1026)
Q Consensus 521 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 557 (1026)
.++++++||++.+++.... .....|+.+...
T Consensus 94 ~~~~~~~iG~~~i~~~~~~------~~~~~W~~~~~~ 124 (136)
T cd08402 94 RIGKNDPIGKVVLGCNATG------AELRHWSDMLAS 124 (136)
T ss_pred CCCCCceeEEEEECCccCC------hHHHHHHHHHhC
Confidence 9999999999999997642 224667666554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=132.62 Aligned_cols=105 Identities=23% Similarity=0.339 Sum_probs=84.3
Q ss_pred CCceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CC---EEEEeeeecCCCCceeecEEEEEeeCC---CCEEEEE
Q 001696 609 PPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKY--GQ---KWVRTRTILDTFNPKWNEQYTWEVYDP---CTVITLG 680 (1026)
Q Consensus 609 ~~~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--g~---~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~ 680 (1026)
+..|.|+|.|++|++|+.+ +..|.+||||++.+ +. .+.+|++++++.||.|||.|.|.+... ...|.|+
T Consensus 11 ~~~~~L~V~vi~a~~L~~~---d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~ 87 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQT---DMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFT 87 (135)
T ss_pred CCCCeEEEEEEEecCCCcc---cCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEE
Confidence 3448999999999999987 56789999999997 32 358999999999999999999998642 3369999
Q ss_pred EEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeee
Q 001696 681 VFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLV 728 (1026)
Q Consensus 681 v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 728 (1026)
|||++..+ ++++||++.|....... ....+|+.|..
T Consensus 88 V~d~d~~~-----------~~~~iG~~~l~~~~~~~-~~~~~W~~l~~ 123 (135)
T cd08410 88 VYGHNVKS-----------SNDFIGRIVIGQYSSGP-SETNHWRRMLN 123 (135)
T ss_pred EEeCCCCC-----------CCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence 99998754 79999999877655433 22477888763
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-13 Score=131.35 Aligned_cols=104 Identities=30% Similarity=0.473 Sum_probs=89.9
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEE-ec--CCC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFS-KE--RIQ 344 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~-v~--~~~ 344 (1026)
.+++.|+. ..+.|.|+|++|++|+..+..+.+||||++.+.+ .+.+|++++++.||.|||+|.|. +. +..
T Consensus 5 ~~~l~y~~--~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~ 82 (123)
T cd04035 5 EFTLLYDP--ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQ 82 (123)
T ss_pred EEEEEEeC--CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhC
Confidence 78889987 4589999999999999988888999999999842 36899999999999999999996 32 223
Q ss_pred CCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCC
Q 001696 345 SSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVP 379 (1026)
Q Consensus 345 ~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~ 379 (1026)
...|.|+|||++.+ .+++||++.+++.++..+..
T Consensus 83 ~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~ 116 (123)
T cd04035 83 RKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQT 116 (123)
T ss_pred CCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCCcc
Confidence 56899999999988 89999999999999987654
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.8e-14 Score=129.70 Aligned_cols=100 Identities=25% Similarity=0.312 Sum_probs=84.9
Q ss_pred CCCCCcCcEEEEEECCE-EEEeeeecCCCCceeecEEEEEeeCC-CCEEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEE
Q 001696 631 DGRGSTDAYCIAKYGQK-WVRTRTILDTFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVR 708 (1026)
Q Consensus 631 ~~~~~~dpyv~v~~g~~-~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~ 708 (1026)
...|.+||||+|.++++ ..+|++++++.||.|||.|.|.+.++ ...|.|.|+|++.+ ++++||++.
T Consensus 8 ~~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~------------~d~~iG~~~ 75 (111)
T cd04052 8 SKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR------------HDPVLGSVS 75 (111)
T ss_pred ccCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC------------CCCeEEEEE
Confidence 34678999999999875 58999999999999999999999885 57799999998864 589999999
Q ss_pred EEccccc-CCceEeeeEeeeecCCCCCccCcEEEEEEEEee
Q 001696 709 IRLSTLE-AHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTI 748 (1026)
Q Consensus 709 i~l~~l~-~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 748 (1026)
++|+++. .+.....||+|.. ++.|+|++++.|.|
T Consensus 76 v~L~~l~~~~~~~~~w~~L~~------~~~G~i~~~~~~~p 110 (111)
T cd04052 76 ISLNDLIDATSVGQQWFPLSG------NGQGRIRISALWKP 110 (111)
T ss_pred ecHHHHHhhhhccceeEECCC------CCCCEEEEEEEEec
Confidence 9999984 3444689999962 34699999999976
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-13 Score=132.80 Aligned_cols=103 Identities=28% Similarity=0.371 Sum_probs=84.8
Q ss_pred EEEEEEEEEeEecCCCCCCCCCCcEEEEEE--CC---eEEEeeeecCCCCCCcccceeEEEeeCC--CcCeEEEEEEEcc
Q 001696 448 WYLRVNVIEAQDIVPNDRNRLPEGFVKVQV--GN---QVLKTKICPTPTTNPLWNEDLVFVAAEP--FEEQLFLTVEDRV 520 (1026)
Q Consensus 448 ~~l~V~I~~a~~L~~~d~~~~~dpyV~v~l--g~---~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~d 520 (1026)
+.|.|+|++|+||+..+..+.+||||+|++ ++ ..++|+++ +++.||.|||.|.|.+... ....|.|+|||++
T Consensus 15 ~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~-~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~ 93 (136)
T cd08405 15 NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIK-KRTLNPVFNESFIFNIPLERLRETTLIITVMDKD 93 (136)
T ss_pred CeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcce-eCCCCCcccceEEEeCCHHHhCCCEEEEEEEECC
Confidence 369999999999999888889999999998 32 35789999 7999999999999987532 3568999999999
Q ss_pred CCCCCceeEEEEEeCcccccccCCCCccceeEEcccC
Q 001696 521 HASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKF 557 (1026)
Q Consensus 521 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 557 (1026)
..+++++||++.+++.+... ....|+.+...
T Consensus 94 ~~~~~~~lG~~~i~~~~~~~------~~~~w~~~~~~ 124 (136)
T cd08405 94 RLSRNDLIGKIYLGWKSGGL------ELKHWKDMLSK 124 (136)
T ss_pred CCCCCcEeEEEEECCccCCc------hHHHHHHHHhC
Confidence 99999999999999987522 24556655544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.6e-14 Score=131.25 Aligned_cols=102 Identities=25% Similarity=0.370 Sum_probs=85.1
Q ss_pred CCCCCCCCEEEEEeCC-ceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCCCCCccceeEEecCccc
Q 001696 17 DGEGSASPFAEVDFLN-QLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNL 95 (1026)
Q Consensus 17 ~~~g~~dpyv~v~~~~-~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~d~~lG~~~i~l~~l 95 (1026)
..+|.+||||+|++++ ..++|++++++.||+|||+|.|.+.+.. ...|.|.|||++. . ++++||++.++|+++
T Consensus 8 ~~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~---~~~l~i~v~d~~~--~-~d~~iG~~~v~L~~l 81 (111)
T cd04052 8 SKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRR---KSRVTVVVKDDRD--R-HDPVLGSVSISLNDL 81 (111)
T ss_pred ccCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcC---CCEEEEEEEECCC--C-CCCeEEEEEecHHHH
Confidence 3578999999999987 4679999999999999999999987653 2679999999443 3 789999999999998
Q ss_pred cccCCceeEEeeccccccccccccccceeEEecC
Q 001696 96 VRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYISP 129 (1026)
Q Consensus 96 ~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 129 (1026)
...+.....||+|.. ...|+|++++.|.+
T Consensus 82 ~~~~~~~~~w~~L~~-----~~~G~i~~~~~~~p 110 (111)
T cd04052 82 IDATSVGQQWFPLSG-----NGQGRIRISALWKP 110 (111)
T ss_pred HhhhhccceeEECCC-----CCCCEEEEEEEEec
Confidence 765545689999985 24799999998875
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.8e-14 Score=136.20 Aligned_cols=103 Identities=26% Similarity=0.347 Sum_probs=85.5
Q ss_pred CCceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC--C---EEEEeeeecCCCCceeecEEEEEeeCC---CCEEEEE
Q 001696 609 PPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG--Q---KWVRTRTILDTFNPKWNEQYTWEVYDP---CTVITLG 680 (1026)
Q Consensus 609 ~~~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g--~---~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~ 680 (1026)
+..|.|+|.|++|++|+++ +..|.+||||+|.+. + ...+|++++++.||.|||.|.|.+... ...|.|+
T Consensus 11 ~~~~~L~V~v~~A~~L~~~---d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~ 87 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAM---DITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIA 87 (134)
T ss_pred CCCCEEEEEEEEeeCCCcc---ccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 3448999999999999987 667899999999983 2 357999999999999999999998642 3469999
Q ss_pred EEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeee
Q 001696 681 VFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 681 v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 727 (1026)
|||++.++ ++++||++.|++... +....+|+++.
T Consensus 88 v~d~~~~~-----------~~~~IG~~~l~~~~~--~~~~~~w~~~~ 121 (134)
T cd08403 88 VVDYDRVG-----------HNELIGVCRVGPNAD--GQGREHWNEML 121 (134)
T ss_pred EEECCCCC-----------CCceeEEEEECCCCC--CchHHHHHHHH
Confidence 99999865 799999999998844 33347888876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-13 Score=131.76 Aligned_cols=104 Identities=14% Similarity=0.201 Sum_probs=85.9
Q ss_pred CCceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC---C---EEEEeeeecCCCCceeecEEEEEeeC---CCCEEEE
Q 001696 609 PPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG---Q---KWVRTRTILDTFNPKWNEQYTWEVYD---PCTVITL 679 (1026)
Q Consensus 609 ~~~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g---~---~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i 679 (1026)
+..+.|.|.|++|+||+++ +..|.+||||++.+. + .+.||++++++.||+|||+|.|++.. ....|.|
T Consensus 12 ~~~~~L~V~VikarnL~~~---~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~ 88 (138)
T cd08408 12 ALTGRLSVEVIKGSNFKNL---AMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF 88 (138)
T ss_pred CCCCeEEEEEEEecCCCcc---ccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence 3448999999999999987 667899999999883 2 25799999999999999999999974 3557999
Q ss_pred EEEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeee
Q 001696 680 GVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 680 ~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 727 (1026)
.|||++.++ ++++||.+.|++.....+ ...+|+.+.
T Consensus 89 ~V~~~~~~~-----------~~~~iG~v~l~~~~~~~~-~~~hW~~~l 124 (138)
T cd08408 89 SVYNKRKMK-----------RKEMIGWFSLGLNSSGEE-EEEHWNEMK 124 (138)
T ss_pred EEEECCCCC-----------CCcEEEEEEECCcCCCch-HHHHHHHHH
Confidence 999999764 799999999998865432 236788775
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-14 Score=152.85 Aligned_cols=104 Identities=28% Similarity=0.499 Sum_probs=92.6
Q ss_pred EEEEEEEEeEecCCCCCCCCCCcEEEEEE-----CCeEEEeeeecCCCCCCcccceeEEEeeCC-CcCeEEEEEEEccCC
Q 001696 449 YLRVNVIEAQDIVPNDRNRLPEGFVKVQV-----GNQVLKTKICPTPTTNPLWNEDLVFVAAEP-FEEQLFLTVEDRVHA 522 (1026)
Q Consensus 449 ~l~V~I~~a~~L~~~d~~~~~dpyV~v~l-----g~~~~kT~~~~~~t~nP~wne~f~f~v~~~-~~~~L~i~V~d~d~~ 522 (1026)
.|.|+|.+|+||.++|.+|.+||||++++ +..+++|+++ +.++||+|||+|.|.+... .+..|.|+|||+|..
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTi-k~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT 259 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTI-KATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT 259 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhh-hhhcCccccceeEEecccccccceeEEEEeccccc
Confidence 59999999999999999999999999999 3357899999 7999999999999998654 566899999999999
Q ss_pred CCCceeEEEEEeCcccccccCCCCccceeEEcccCC
Q 001696 523 SKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFG 558 (1026)
Q Consensus 523 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~ 558 (1026)
++++++|...+.+++|... ..+.||.|....
T Consensus 260 sRNDFMGslSFgisEl~K~-----p~~GWyKlLsqe 290 (683)
T KOG0696|consen 260 SRNDFMGSLSFGISELQKA-----PVDGWYKLLSQE 290 (683)
T ss_pred ccccccceecccHHHHhhc-----chhhHHHHhhhh
Confidence 9999999999999999865 467898887654
|
|
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=132.66 Aligned_cols=117 Identities=23% Similarity=0.366 Sum_probs=95.2
Q ss_pred CceEEEEeecCCCccCC--CCCCCCCEEEEEe------CCceeeeccCCCCC-CcccceeEEEeccCCCCCccceEEEEE
Q 001696 1 MKLVVEVVDAYDLMPKD--GEGSASPFAEVDF------LNQLSKTKTIPKNL-NPVWNQKLLFDFDQTKSHNHLRIEVSI 71 (1026)
Q Consensus 1 ~~L~V~v~~a~~L~~~~--~~g~~dpyv~v~~------~~~~~~T~~~~~t~-nP~Wne~f~f~~~~~~~~~~~~L~~~V 71 (1026)
|+|+|+|++|+||+..+ ..+.+||||++++ ...+++|+++.++. ||+|||+|.|.+..++. ..|.|.|
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~---~~l~~~V 78 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPEL---AFLRFVV 78 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCe---EEEEEEE
Confidence 57999999999998887 5789999999999 34678999987765 99999999999886542 5799999
Q ss_pred eeCCCCCCCCCccceeEEecCccccccCCceeEEeeccccccccccccccceeEEe
Q 001696 72 YHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYI 127 (1026)
Q Consensus 72 ~d~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 127 (1026)
||++. . ++++||++.+++.++.. ...|++|..........|.|.+++.+
T Consensus 79 ~d~~~--~-~~~~iG~~~~~l~~l~~----g~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 79 YDEDS--G-DDDFLGQACLPLDSLRQ----GYRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred EeCCC--C-CCcEeEEEEEEhHHhcC----ceEEEEecCCCCCCCcceeEEEEEEE
Confidence 99443 2 78999999999998843 35789998765444567888888765
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.4e-13 Score=129.45 Aligned_cols=116 Identities=26% Similarity=0.428 Sum_probs=98.6
Q ss_pred EEEEEEEEeecCCCCC--CCCCCCcEEEEEEC------CeeeEeeeecCCC-CCeEeEEEEEEecCCCCCeEEEEEEeCC
Q 001696 286 YLYVRVVKAKDLPPSS--ITGSCDPYVEVKMG------NYKGRTKHFEKRM-NPEWNQVFAFSKERIQSSMLEVFLKDKE 356 (1026)
Q Consensus 286 ~L~V~v~~a~~L~~~d--~~g~~dpyv~v~~~------~~~~kT~~~~~t~-nP~wne~f~f~v~~~~~~~L~v~V~d~~ 356 (1026)
.|+|+|++|++|+..+ ..+.+||||++++. ..+.+|+++.++. ||.|||+|.|.+.......|.|+|||.+
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999887 57789999999994 4568999988776 9999999999987665568999999999
Q ss_pred CCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEe
Q 001696 357 MVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWM 410 (1026)
Q Consensus 357 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 410 (1026)
.. ++++||++.+++.++..+ ..|++|.+..+.....|.|.+.+++
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~g--------~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQG--------YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcCc--------eEEEEecCCCCCCCcceeEEEEEEE
Confidence 88 999999999999998543 2799998877654567899888765
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.50 E-value=6e-14 Score=135.89 Aligned_cols=101 Identities=29% Similarity=0.409 Sum_probs=87.7
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeeeecCCCCceeecEEEEEeeCC---CCEEEEEEEe
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ-----KWVRTRTILDTFNPKWNEQYTWEVYDP---CTVITLGVFD 683 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~-----~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~v~d 683 (1026)
+.|.|.|++|+||+.. +..+.+||||++++.+ ...+|+++.++.||.|||.|.|.+... ...|.|+|||
T Consensus 14 ~~L~V~v~~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d 90 (134)
T cd00276 14 ERLTVVVLKARNLPPS---DGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVD 90 (134)
T ss_pred CEEEEEEEEeeCCCCc---cCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEe
Confidence 7899999999999986 5677899999999843 257999999999999999999998764 5689999999
Q ss_pred CCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeee
Q 001696 684 NCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLV 728 (1026)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 728 (1026)
.+..+ ++++||.+.|+|++ .+....+||+|..
T Consensus 91 ~~~~~-----------~~~~lG~~~i~l~~--~~~~~~~W~~l~~ 122 (134)
T cd00276 91 KDSVG-----------RNEVIGQVVLGPDS--GGEELEHWNEMLA 122 (134)
T ss_pred cCCCC-----------CCceeEEEEECCCC--CCcHHHHHHHHHh
Confidence 98754 78999999999999 5556689999974
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.9e-14 Score=179.76 Aligned_cols=118 Identities=25% Similarity=0.473 Sum_probs=102.7
Q ss_pred CceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-EEEeeeecCCCCceeecEEEEEeeCCC--CEEEEEEEeCCC
Q 001696 610 PVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQK-WVRTRTILDTFNPKWNEQYTWEVYDPC--TVITLGVFDNCH 686 (1026)
Q Consensus 610 ~~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~-~~~T~~~~~t~~P~wne~~~~~v~~~~--~~l~i~v~d~~~ 686 (1026)
-.|.|.|+|++|+||. +..|++||||++.+|++ +.||++++++.||+|||.|+|.+.+|. +.|+|+|||+|.
T Consensus 1978 ~~G~L~V~V~~a~nl~-----~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK-----QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred CCcceEEEEeeccccc-----cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence 4599999999999997 23689999999999955 889999999999999999999999875 689999999998
Q ss_pred CCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcE---EEEEEEEee
Q 001696 687 LGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGE---LQLAIRFTI 748 (1026)
Q Consensus 687 ~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~---i~l~~~f~~ 748 (1026)
++ ++.+|++.|+|.++..+..+..||+|.. +| +|.|+ |+++++|++
T Consensus 2053 f~------------kd~~G~~~i~l~~vv~~~~~~~~~~L~~---~~-~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2053 FG------------KSSLGKVTIQIDRVVMEGTYSGEYSLNP---ES-NKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred cC------------CCCCceEEEEHHHHhcCceeeeeeecCc---cc-ccCCCcceEEEEEEecC
Confidence 74 4589999999999999999999999982 12 34577 999998864
|
|
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.8e-13 Score=127.90 Aligned_cols=98 Identities=28% Similarity=0.392 Sum_probs=82.2
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-----CEEEEeeeecCCCCceeecEEEEEeeCC----CCEEEEEEE
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG-----QKWVRTRTILDTFNPKWNEQYTWEVYDP----CTVITLGVF 682 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g-----~~~~~T~~~~~t~~P~wne~~~~~v~~~----~~~l~i~v~ 682 (1026)
+.|+|.|++|++|++. +..+.+||||++.+. ....+|++++++.||.|||.|.|..... ...|.|+||
T Consensus 15 ~~L~V~v~~a~~L~~~---~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~ 91 (123)
T cd04035 15 SALHCTIIRAKGLKAM---DANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVL 91 (123)
T ss_pred CEEEEEEEEeeCCCCC---CCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence 6899999999999986 556789999999872 2469999999999999999999974432 468999999
Q ss_pred eCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeE
Q 001696 683 DNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSY 724 (1026)
Q Consensus 683 d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~ 724 (1026)
|++.+ .+++||.+.++|++|..+.....|+
T Consensus 92 d~~~~------------~~~~iG~~~i~l~~l~~~~~~~~~~ 121 (123)
T cd04035 92 DEDRF------------GNDFLGETRIPLKKLKPNQTKQFNI 121 (123)
T ss_pred EcCCc------------CCeeEEEEEEEcccCCCCcceEeec
Confidence 98763 4889999999999998887544444
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.2e-14 Score=146.90 Aligned_cols=222 Identities=19% Similarity=0.322 Sum_probs=160.4
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEeCC-----ceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCC
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLN-----QLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHER 76 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~ 76 (1026)
++.+++..|++|.+++.++..|||++..+.. .+.+|++..+++||.|||+-.+.....+......+.+.|.|.+.
T Consensus 94 ~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~ 173 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDK 173 (362)
T ss_pred hcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcc
Confidence 5789999999999999999999999999832 56889999999999999998877544444444567888888333
Q ss_pred CCCCCCccceeEEecCccccccCCceeEEeeccccccccccccccceeEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 001696 77 RPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYISPQSETTQPPTSSLPKPKSPKNTTNLDSK 156 (1026)
Q Consensus 77 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1026)
....++.|+..+++..+..... +.. .+.|+. ..++..
T Consensus 174 --~~~~~sqGq~r~~lkKl~p~q~---------k~f-------~~cl~~----~lp~~r--------------------- 210 (362)
T KOG1013|consen 174 --KTHNESQGQSRVSLKKLKPLQR---------KSF-------NICLEK----SLPSER--------------------- 210 (362)
T ss_pred --cccccCcccchhhhhccChhhc---------chh-------hhhhhc----cCCccc---------------------
Confidence 4578899999999877764421 000 000000 000000
Q ss_pred ccCCCcchhhccccCCCCCCCccccccccccccccCCcCCCCcchhhhcccccccCCCCCCCCCCCCCCccccccCcCCC
Q 001696 157 TFTALPKVEELAAVDAPKSLPEEEISRISLKEDIKEPAKVTVEPIQEFLKQQVVLQPGQSVEKQPQGVPFTMHSMNLQQG 236 (1026)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (1026)
. ++.+
T Consensus 211 -----------------------------a-d~~~--------------------------------------------- 215 (362)
T KOG1013|consen 211 -----------------------------A-DRDE--------------------------------------------- 215 (362)
T ss_pred -----------------------------c-cccc---------------------------------------------
Confidence 0 0000
Q ss_pred CCCCcccCcccCCCCCCCCCCCCCCCCCCCcccccceeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC
Q 001696 237 RPGDQEEYNLKDTNPQLGERWPNGGGYGGRGWMSGERFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN 316 (1026)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~ 316 (1026)
+ ...| ...+++.|.. ....|.|++++|..|..+|.+|-+||||.+++..
T Consensus 216 -------~------E~rg----------------~i~isl~~~s--~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~p 264 (362)
T KOG1013|consen 216 -------D------EERG----------------AILISLAYSS--TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSP 264 (362)
T ss_pred -------h------hhcc----------------ceeeeeccCc--CCCceEEEEEEeeeeeccccCCCCCccceeecCC
Confidence 0 0000 0134455544 4467899999999999999999999999999875
Q ss_pred -----eeeEeeeecCCCCCeEeEEEEEEec--CCCCCeEEEEEEeCCCCCCCceeEEEEEEcc
Q 001696 317 -----YKGRTKHFEKRMNPEWNQVFAFSKE--RIQSSMLEVFLKDKEMVGRDDYLGRVAFDLN 372 (1026)
Q Consensus 317 -----~~~kT~~~~~t~nP~wne~f~f~v~--~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~ 372 (1026)
.+++|.+.+++.||.||+.|.|.+. ++....+.|.|||++..+..+++|-+...+.
T Consensus 265 dv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 265 DVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY 327 (362)
T ss_pred CcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCccccccc
Confidence 2678999999999999999999874 4457899999999999889999998766544
|
|
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.4e-13 Score=127.97 Aligned_cols=89 Identities=22% Similarity=0.353 Sum_probs=81.1
Q ss_pred EEEEEEEeEecCCCCCCCCCCcEEEEEECCeE--EEeeeecCCCCCCcccceeEEEeeCCCcCeEEEEEEEccCCCCCce
Q 001696 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQV--LKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASKDEV 527 (1026)
Q Consensus 450 l~V~I~~a~~L~~~d~~~~~dpyV~v~lg~~~--~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~~ 527 (1026)
|+|.|++|++|+..+..+.+||||+++++++. .+|+++ +++.||.|||.|.|.+..+....|.|+|||++..++|++
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v-~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYI-PNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEE-ECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 79999999999999988999999999998865 577777 689999999999999877777899999999999899999
Q ss_pred eEEEEEeCcccc
Q 001696 528 LGKISLPLHIFE 539 (1026)
Q Consensus 528 lG~~~i~l~~l~ 539 (1026)
||++.+++.+..
T Consensus 81 iG~~~i~l~~~~ 92 (124)
T cd04037 81 IGETVIDLEDRF 92 (124)
T ss_pred eEEEEEeecccc
Confidence 999999998754
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.8e-13 Score=128.11 Aligned_cols=97 Identities=19% Similarity=0.261 Sum_probs=83.1
Q ss_pred EEEEecCCCCCccCCCCCCcCcEEEEEECCE-------EEEeeeecCCCCceeecEEEEEeeC-CCCEEEEEEEeCCC--
Q 001696 617 GILGAQGLLPMKMKDGRGSTDAYCIAKYGQK-------WVRTRTILDTFNPKWNEQYTWEVYD-PCTVITLGVFDNCH-- 686 (1026)
Q Consensus 617 ~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~-------~~~T~~~~~t~~P~wne~~~~~v~~-~~~~l~i~v~d~~~-- 686 (1026)
..++|++|+.. +..|.+||||+|++++. .+||++++++.||.|||.|.|.+.. ....|.|+|||++.
T Consensus 5 ~~i~a~~L~~~---d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDK---DVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCC---CCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCc
Confidence 34699999987 66789999999999543 4999999999999999999998764 56689999999996
Q ss_pred --CCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeee
Q 001696 687 --LGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 687 --~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 727 (1026)
.+ ++++||.+.+++++|..+.....|++|.
T Consensus 82 ~~~~-----------~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 82 KDLS-----------DHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCCC-----------CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 43 7999999999999998777668899984
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.5e-13 Score=156.46 Aligned_cols=126 Identities=21% Similarity=0.389 Sum_probs=107.1
Q ss_pred eeEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEECCe-eeE
Q 001696 284 MSYLYVRVVKAKDLPPSSI------------------------------------------TGSCDPYVEVKMGNY-KGR 320 (1026)
Q Consensus 284 ~~~L~V~v~~a~~L~~~d~------------------------------------------~g~~dpyv~v~~~~~-~~k 320 (1026)
.|.|.|+|.+|++|+.+|. .+++||||+|.++++ ..|
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R 92 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR 92 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence 4889999999999985321 246799999999886 569
Q ss_pred eeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCC-c
Q 001696 321 TKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEG-K 399 (1026)
Q Consensus 321 T~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~ 399 (1026)
|++++++.||+|||+|.|.+.++ ...|.|+|||++.++ +++||++.|++.++..+...+ .|++|.+..+.. +
T Consensus 93 TrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd-----~Wl~Ll~~~~kp~k 165 (868)
T PLN03008 93 TRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERIS-----GWFPVLGASGKPPK 165 (868)
T ss_pred EEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceE-----EEEEccccCCCCCC
Confidence 99999999999999999999886 468999999999995 689999999999999887655 999999887642 3
Q ss_pred ccceEEEEEEecccCch
Q 001696 400 VRGQTMLAIWMGTQADE 416 (1026)
Q Consensus 400 ~~G~i~l~~~~~~~~d~ 416 (1026)
..|+|++++.|.+....
T Consensus 166 ~~~kl~v~lqf~pv~~~ 182 (868)
T PLN03008 166 AETAIFIDMKFTPFDQI 182 (868)
T ss_pred CCcEEEEEEEEEEcccc
Confidence 45899999999887653
|
|
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.6e-13 Score=126.04 Aligned_cols=98 Identities=19% Similarity=0.315 Sum_probs=84.3
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCe-------eeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCC----CC
Q 001696 291 VVKAKDLPPSSITGSCDPYVEVKMGNY-------KGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEM----VG 359 (1026)
Q Consensus 291 v~~a~~L~~~d~~g~~dpyv~v~~~~~-------~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~----~~ 359 (1026)
.++|++|+..+..|.+||||+|.+.+. .++|++++++.||+|||+|.|.+.......|.|+|||++. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 478999999998899999999999764 3899999999999999999998654445689999999997 78
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCEEEEeec
Q 001696 360 RDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLED 393 (1026)
Q Consensus 360 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 393 (1026)
++++||++.+++.++....... .|+.|..
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~-----~~~~l~~ 114 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQK-----LTLPLKG 114 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcE-----EEEEccC
Confidence 9999999999999998765433 7888844
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.2e-13 Score=122.42 Aligned_cols=81 Identities=17% Similarity=0.275 Sum_probs=67.8
Q ss_pred eEEEEeecCCCccCCCCCCCCCEEEEEeCC-----ceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCC-
Q 001696 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLN-----QLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHER- 76 (1026)
Q Consensus 3 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~- 76 (1026)
|.|+|++|+||+ +.+||||++.++. .+.+|+++++|+||+|||+|.|.+.. . ..|.+.|||++.
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s----~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-S----QTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-C----CEEEEEEEEcccc
Confidence 789999999994 5699999999953 46899999999999999999999874 2 599999999631
Q ss_pred ----CCCCCCccceeEEecCc
Q 001696 77 ----RPIPGRHFLGRVRIPCS 93 (1026)
Q Consensus 77 ----~~~~~d~~lG~~~i~l~ 93 (1026)
...+.|+++|++.+.|+
T Consensus 71 ~~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 71 KVKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred cccccccCcccEEEEEEEEEC
Confidence 12357899988888876
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-12 Score=118.13 Aligned_cols=87 Identities=29% Similarity=0.481 Sum_probs=66.9
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCC
Q 001696 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ-----KWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLG 688 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~-----~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~ 688 (1026)
|.|.|++|+||+. .+||||++.+++ ..+||+++++|+||+|||.|.|.+.. ...|.+.|||++.-.
T Consensus 1 L~V~V~~A~~L~~--------~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~ 71 (118)
T cd08686 1 LNVIVHSAQGFKQ--------SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSK 71 (118)
T ss_pred CEEEEEeCCCCCC--------CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccc
Confidence 5799999999953 589999998852 46999999999999999999999864 668999999984100
Q ss_pred CCCccCCCCCCCCCeeEEEEEEccc
Q 001696 689 GGEKQNGSSAVRDSRIGKVRIRLST 713 (1026)
Q Consensus 689 ~~~~~~~~~~~~~~~lG~~~i~l~~ 713 (1026)
.+. -..++|+++|++.|.|..
T Consensus 72 --~~~--d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 72 --VKL--DGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred --ccc--cccCcccEEEEEEEEECH
Confidence 000 002379999877777654
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.2e-12 Score=118.17 Aligned_cols=94 Identities=22% Similarity=0.272 Sum_probs=76.8
Q ss_pred EEEEEecCCCCCccCCCCCCcCcEEEEEECC------EEEEeeeecCCCCceeecEEEEEeeC-----CCCEEEEEEEeC
Q 001696 616 VGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ------KWVRTRTILDTFNPKWNEQYTWEVYD-----PCTVITLGVFDN 684 (1026)
Q Consensus 616 v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~------~~~~T~~~~~t~~P~wne~~~~~v~~-----~~~~l~i~v~d~ 684 (1026)
+..++|++|+.+ +..|.+||||+|++.+ ..++|+++++++||.|| .|.|++.. +...|.|+|||+
T Consensus 4 ~~~i~a~~L~~~---d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~ 79 (110)
T cd04047 4 ELQFSGKKLDKK---DFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDY 79 (110)
T ss_pred EEEEEeCCCCCC---CCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEe
Confidence 344599999987 6678999999998843 25999999999999999 78887643 256899999999
Q ss_pred CCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEee
Q 001696 685 CHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPL 726 (1026)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L 726 (1026)
+.++ +|++||++.++|++|..+. .+++.+
T Consensus 80 d~~~-----------~d~~iG~~~~~l~~l~~~~--~~~~~~ 108 (110)
T cd04047 80 DSSG-----------KHDLIGEFETTLDELLKSS--PLEFEL 108 (110)
T ss_pred CCCC-----------CCcEEEEEEEEHHHHhcCC--CceEEe
Confidence 9865 7999999999999998654 445544
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.9e-12 Score=116.70 Aligned_cols=88 Identities=20% Similarity=0.399 Sum_probs=76.2
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEECCe------eeEeeeecCCCCCeEeEEEEEEecCCC----CCeEEEEEEeCCCC
Q 001696 289 VRVVKAKDLPPSSITGSCDPYVEVKMGNY------KGRTKHFEKRMNPEWNQVFAFSKERIQ----SSMLEVFLKDKEMV 358 (1026)
Q Consensus 289 V~v~~a~~L~~~d~~g~~dpyv~v~~~~~------~~kT~~~~~t~nP~wne~f~f~v~~~~----~~~L~v~V~d~~~~ 358 (1026)
+-.++|++|+..+..|.+||||+|++.+. .++|++++++.||+|| +|.|.+.... ...|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 34568999999999999999999998653 5899999999999999 7888764332 57999999999999
Q ss_pred CCCceeEEEEEEccccCCC
Q 001696 359 GRDDYLGRVAFDLNEVPTR 377 (1026)
Q Consensus 359 ~~d~~lG~~~i~l~~l~~~ 377 (1026)
++|++||++.+++.++...
T Consensus 83 ~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 83 GKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCcEEEEEEEEHHHHhcC
Confidence 9999999999999999854
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-12 Score=141.98 Aligned_cols=123 Identities=28% Similarity=0.532 Sum_probs=107.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCC-------
Q 001696 285 SYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEM------- 357 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~------- 357 (1026)
..++++|++|.+|..+|..|++||||.+.++..+.+|+++...+||+|||.|.|.+.+. .+.|.+.|||.+.
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~dlksklr 373 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDNDLKSKLR 373 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCcccHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999776 5799999999874
Q ss_pred ----CCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecccCc
Q 001696 358 ----VGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGTQAD 415 (1026)
Q Consensus 358 ----~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~d 415 (1026)
-.+|+|+|+..|.+..+.... ..||.|+.....+.+.|.|++.+.....++
T Consensus 374 qkl~resddflgqtvievrtlsgem-------dvwynlekrtdksavsgairlhisveikge 428 (1283)
T KOG1011|consen 374 QKLTRESDDFLGQTVIEVRTLSGEM-------DVWYNLEKRTDKSAVSGAIRLHISVEIKGE 428 (1283)
T ss_pred HHhhhcccccccceeEEEEecccch-------hhhcchhhccchhhccceEEEEEEEEEcCc
Confidence 247899999999988876542 389999998877779999998887665544
|
|
| >PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-11 Score=137.78 Aligned_cols=178 Identities=24% Similarity=0.355 Sum_probs=122.6
Q ss_pred ccchhhhHHHHHHHHHHHHhHHHHH---HHhhccccccCchhHHHHHHHHHHHHHhccch---HHHHHHHHHHHHhhccc
Q 001696 814 MWSMRRSKANFFRVMSLLSGMISVS---RWFTDICNWRNPVTAVLVHILFLILIWYPELI---LPTVFLYMFLIGLWNYR 887 (1026)
Q Consensus 814 ~~s~~~~~~n~~Rl~~~~~~~~~~~---~~i~~~~~W~~p~~s~~~~~~~~~~~~~p~l~---lp~~~l~l~~~~~~~~~ 887 (1026)
.+|+..+..|+.||...+..++.++ +.+.++++|++|..|+.++++|+++|++|.+. +|++++.+ .+++..|.
T Consensus 2 ~lS~~ll~~n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~ll~-~il~~~yl 80 (359)
T PF06398_consen 2 PLSSPLLSSNFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLLLF-GILLPSYL 80 (359)
T ss_pred CcChHHHHhChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4788999999999999999999999 99999999999999999999999999999873 34444333 33344444
Q ss_pred cC-CCCCCCCCCCccccccCCCCCCCcccCCCCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHhhhHhHhh----hcccc
Q 001696 888 FR-PRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSKTHDIVRIRYDRLRSVAGRIQTVVGDIATQGERFQS----LLSWR 962 (1026)
Q Consensus 888 ~~-~~~p~~~~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~~~~r~~~l~~~~~~vQ~~l~~~a~~le~~~~----l~~w~ 962 (1026)
.+ |...+.... .. .+.+.+.+..|+-.+. -..+..+++.+||.|+.+.+.++.+.. +++|+
T Consensus 81 ~~~p~~~~~~~~----~~----~~~~~~~~~~ptl~~~------s~e~~~nL~dlQn~m~~~~~~~d~~~~~~~~~~~f~ 146 (359)
T PF06398_consen 81 YRHPSPTSSLPK----SY----EDHNPEPSEGPTLDKP------SREIVMNLRDLQNKMEDLSDPYDFLSSFLYPYLNFS 146 (359)
T ss_pred eecCCCcccccc----cc----cccCCCcCCCCCcchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 33 221111110 00 0000011100111100 124566677899999999999999885 45799
Q ss_pred CchhHHHHHHHHHHHHHHH----hhhhhHHHHHHHhhh-hhcCCCCCCC
Q 001696 963 DPRATALFILFSLCAAMVL----YTTPFKVVALLAGLY-YLRHPRFRSK 1006 (1026)
Q Consensus 963 ~p~~t~~~~~~l~~~~i~l----~~iP~r~i~l~~g~~-~~r~P~~~~~ 1006 (1026)
++..|.+++++|+++.+.+ .+||+|++++++|.. .+.||..++.
T Consensus 147 ~e~~s~~~f~~l~~~~~~~~l~~~~ip~r~~ll~~g~~~l~~Hp~~~~~ 195 (359)
T PF06398_consen 147 DENLSSLIFLLLLLSPILLLLLSPFIPWRFVLLVSGAFVLLYHPPWRQA 195 (359)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCcHHHH
Confidence 9999998887777655543 468999999999844 5689977643
|
Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p []. |
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.7e-13 Score=149.55 Aligned_cols=128 Identities=30% Similarity=0.526 Sum_probs=106.9
Q ss_pred eEEEEeecCCCccCCCCCCCCCEEEEEeC--------------------------C-----ceeeeccCCCCCCccccee
Q 001696 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFL--------------------------N-----QLSKTKTIPKNLNPVWNQK 51 (1026)
Q Consensus 3 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~--------------------------~-----~~~~T~~~~~t~nP~Wne~ 51 (1026)
|.|.+.+|+||..+|.+|.+|||+.+.+- + -.+-|.++++|+||.|+|.
T Consensus 116 l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~Ek 195 (1103)
T KOG1328|consen 116 LNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSEK 195 (1103)
T ss_pred HHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhhh
Confidence 34567889999999999999999998871 0 1234788999999999999
Q ss_pred EEEeccCCCCCccceEEEEEeeCCCCC----------------------------------CCCCccceeEEecCccccc
Q 001696 52 LLFDFDQTKSHNHLRIEVSIYHHERRP----------------------------------IPGRHFLGRVRIPCSNLVR 97 (1026)
Q Consensus 52 f~f~~~~~~~~~~~~L~~~V~d~d~~~----------------------------------~~~d~~lG~~~i~l~~l~~ 97 (1026)
|.|.+.+... .++.+.|||+|+.. ...|||||++.|||.++..
T Consensus 196 F~F~IeDv~t---DqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~ 272 (1103)
T KOG1328|consen 196 FQFTIEDVQT---DQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPP 272 (1103)
T ss_pred eeeehhcccc---ceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCc
Confidence 9999987664 78999999977641 1138999999999999998
Q ss_pred cCCceeEEeeccccccccccccccceeEEecCCCCCCC
Q 001696 98 KGEEVYQRFPLEKKWFLSSVKGEVGLKIYISPQSETTQ 135 (1026)
Q Consensus 98 ~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~~~~~ 135 (1026)
.+ .++||.|++++..++++|.+++++++....+..+
T Consensus 273 ~G--ld~WFkLepRS~~S~VqG~~~LklwLsT~e~~~a 308 (1103)
T KOG1328|consen 273 DG--LDQWFKLEPRSDKSKVQGQVKLKLWLSTKEEGRA 308 (1103)
T ss_pred ch--HHHHhccCcccccccccceEEEEEEEeeeccccc
Confidence 76 7999999999999999999999999987655543
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-11 Score=108.99 Aligned_cols=82 Identities=33% Similarity=0.546 Sum_probs=75.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCce
Q 001696 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGN---YKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDY 363 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 363 (1026)
|+|+|++|+||+..+..+.+||||++.+++ ...+|++++++.+|.|||+|.|.+.......|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 689999999999988888999999999988 57999999999999999999999876666779999999999988999
Q ss_pred eEEEE
Q 001696 364 LGRVA 368 (1026)
Q Consensus 364 lG~~~ 368 (1026)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1e-11 Score=159.64 Aligned_cols=117 Identities=20% Similarity=0.342 Sum_probs=98.7
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeEeeeecCCCCCeEeEEEEEEecCCC-CCeEEEEEEeCCCCCC
Q 001696 283 QMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNY-KGRTKHFEKRMNPEWNQVFAFSKERIQ-SSMLEVFLKDKEMVGR 360 (1026)
Q Consensus 283 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~v~~~~-~~~L~v~V~d~~~~~~ 360 (1026)
-.|.|.|+|++|+||. +..|.+||||++.++++ +.||++++++.||+|||+|.|.++++. +..|.|+|||+|.+++
T Consensus 1978 ~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~k 2055 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGK 2055 (2102)
T ss_pred CCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCC
Confidence 3589999999999998 44688999999999965 889999999999999999999988764 4679999999999955
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccce---EEEEEEe
Q 001696 361 DDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQ---TMLAIWM 410 (1026)
Q Consensus 361 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~---i~l~~~~ 410 (1026)
+.||.+.|++.++..+.... .||+|.+.. +..|+ |.+.+.+
T Consensus 2056 -d~~G~~~i~l~~vv~~~~~~-----~~~~L~~~~---~k~G~~~~~~~e~~w 2099 (2102)
T PLN03200 2056 -SSLGKVTIQIDRVVMEGTYS-----GEYSLNPES---NKDGSSRTLEIEFQW 2099 (2102)
T ss_pred -CCCceEEEEHHHHhcCceee-----eeeecCccc---ccCCCcceEEEEEEe
Confidence 59999999999998776555 899999632 23577 8877643
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.5e-11 Score=107.03 Aligned_cols=82 Identities=33% Similarity=0.568 Sum_probs=75.1
Q ss_pred EEEEEEEeEecCCCCCCCCCCcEEEEEECC---eEEEeeeecCCCCCCcccceeEEEeeCCCcCeEEEEEEEccCCCCCc
Q 001696 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVGN---QVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASKDE 526 (1026)
Q Consensus 450 l~V~I~~a~~L~~~d~~~~~dpyV~v~lg~---~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~ 526 (1026)
|+|+|++|+||+..+..+.+||||++.+++ ..++|+++ +++.+|.|||.|.|.+..+....|.|+|||++..++|+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~-~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVK-KNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCB-SSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeee-eccccceeeeeeeeeeecccccceEEEEEECCCCCCCC
Confidence 689999999999988888999999999976 67999999 78999999999999988777778999999999988899
Q ss_pred eeEEEE
Q 001696 527 VLGKIS 532 (1026)
Q Consensus 527 ~lG~~~ 532 (1026)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.23 E-value=7e-11 Score=139.21 Aligned_cols=126 Identities=18% Similarity=0.257 Sum_probs=106.7
Q ss_pred eEEEEEEEEecCCCCCcc---------------CCCCCCcCcEEEEEECCEE-EEeeeecCC-CCceeecEEEEEeeCCC
Q 001696 612 GILEVGILGAQGLLPMKM---------------KDGRGSTDAYCIAKYGQKW-VRTRTILDT-FNPKWNEQYTWEVYDPC 674 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~---------------~~~~~~~dpyv~v~~g~~~-~~T~~~~~t-~~P~wne~~~~~v~~~~ 674 (1026)
|.|.++|++|++|++++. ..+.+.+||||.|.+++.+ .||+++.+. .||+|||.|.+++..+.
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~ 87 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMA 87 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCc
Confidence 899999999999987410 1234678999999998766 799999885 69999999999999999
Q ss_pred CEEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEEeec
Q 001696 675 TVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTIF 749 (1026)
Q Consensus 675 ~~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 749 (1026)
+.++|.|.|.+.++ ..+||++.||+.+|..|..+++|+++.....+-.+...+|+++++|.+.
T Consensus 88 ~~v~f~vkd~~~~g------------~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 88 SNIIFTVKDDNPIG------------ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred ceEEEEEecCCccC------------ceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 99999999999875 5699999999999999999999999986654333334589999999874
|
|
| >PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.5e-10 Score=125.87 Aligned_cols=84 Identities=20% Similarity=0.504 Sum_probs=69.4
Q ss_pred cCCCCccchhhhHHHHHHHHH-HHHhHHHHHHHhhccccccCchhHHHHHHHHHHHHHhccchHHHHHHHHHHHHh----
Q 001696 809 DVDSHMWSMRRSKANFFRVMS-LLSGMISVSRWFTDICNWRNPVTAVLVHILFLILIWYPELILPTVFLYMFLIGL---- 883 (1026)
Q Consensus 809 ~~~~~~~s~~~~~~n~~Rl~~-~~~~~~~~~~~i~~~~~W~~p~~s~~~~~~~~~~~~~p~l~lp~~~l~l~~~~~---- 883 (1026)
.++...|+-.++++|+.||.. ++-.+..+.+.|.++.+|++|.+|.+++++|++ +|+.+|++|++++.++.+.+
T Consensus 82 ~a~~e~FspdkLRa~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~-aW~~dll~p~~~~~L~~li~~P~~ 160 (642)
T PF11696_consen 82 IAEDEEFSPDKLRANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFI-AWLLDLLVPAFFAFLIALILSPPA 160 (642)
T ss_pred ccccccCChHHHHHHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCccc
Confidence 356788999999999999998 778888999999999999999999999999998 67779989988877766655
Q ss_pred hccccCCCCC
Q 001696 884 WNYRFRPRHP 893 (1026)
Q Consensus 884 ~~~~~~~~~p 893 (1026)
+.++|-|..+
T Consensus 161 r~~lFPpap~ 170 (642)
T PF11696_consen 161 RSILFPPAPP 170 (642)
T ss_pred ccccCCCCCc
Confidence 3444444433
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.6e-10 Score=106.48 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=78.0
Q ss_pred EEEEEEEecCCCCCccCCCCC--CcCcEEEEEEC---CEEEEeeeecCCCC--ceeecEEEEEeeCC-------------
Q 001696 614 LEVGILGAQGLLPMKMKDGRG--STDAYCIAKYG---QKWVRTRTILDTFN--PKWNEQYTWEVYDP------------- 673 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~~~~--~~dpyv~v~~g---~~~~~T~~~~~t~~--P~wne~~~~~v~~~------------- 673 (1026)
|+|.|.+|+|++..+. +..| .+||||++.+. ..+.+|.++++++| |.||+.|.|++..+
T Consensus 2 LRViIw~~~~v~~~~~-~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 2 LRVIVWNTRDVLNDDT-NITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred EEEEEEECcCCccccc-ccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 7899999999776533 2344 49999999884 46799999999999 99999999988652
Q ss_pred -----------CCEEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCc
Q 001696 674 -----------CTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHR 718 (1026)
Q Consensus 674 -----------~~~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~ 718 (1026)
...|+|+|||+|.++ .|++||.+.++|..+..+.
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s-----------~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFS-----------PDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccC-----------CCCcceEEEEEhhhccccc
Confidence 346999999999876 7999999999999997765
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.5e-10 Score=102.75 Aligned_cols=99 Identities=30% Similarity=0.516 Sum_probs=85.4
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-EEEEeeeecCCCCceeecEEEEEeeC-CCCEEEEEEEeCCCCCCCC
Q 001696 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ-KWVRTRTILDTFNPKWNEQYTWEVYD-PCTVITLGVFDNCHLGGGE 691 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~-~~~~T~~~~~t~~P~wne~~~~~v~~-~~~~l~i~v~d~~~~~~~~ 691 (1026)
|.|.|++|++|... ...+..||||++.+.+ ..++|+++.++.||.||+.|.|++.. ....|.|+|||.+..+
T Consensus 1 l~v~i~~~~~l~~~---~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~--- 74 (102)
T cd00030 1 LRVTVIEARNLPAK---DLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS--- 74 (102)
T ss_pred CEEEEEeeeCCCCc---CCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC---
Confidence 46899999999875 4456899999999987 88999999999999999999999998 6778999999988643
Q ss_pred ccCCCCCCCCCeeEEEEEEccccc-CCceEeeeEee
Q 001696 692 KQNGSSAVRDSRIGKVRIRLSTLE-AHRIYTHSYPL 726 (1026)
Q Consensus 692 ~~~~~~~~~~~~lG~~~i~l~~l~-~~~~~~~~~~L 726 (1026)
.+.+||++.+++.++. .......|++|
T Consensus 75 --------~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 --------KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred --------CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 6899999999999998 55555777764
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-09 Score=99.67 Aligned_cols=100 Identities=36% Similarity=0.638 Sum_probs=85.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCceeE
Q 001696 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGN-YKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLG 365 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG 365 (1026)
|.|+|++|++|......+.++|||.+.+.+ ...+|+++.++.||.|||.|.|.+.......|.|+||+.+..+.+.+||
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 468999999998766667899999999998 7899999999999999999999987644678999999999887899999
Q ss_pred EEEEEccccC-CCCCCCCCCCCEEEEe
Q 001696 366 RVAFDLNEVP-TRVPPDSPLAPQWYRL 391 (1026)
Q Consensus 366 ~~~i~l~~l~-~~~~~~~~~~~~w~~L 391 (1026)
.+.+++.++. ..... ..|++|
T Consensus 81 ~~~~~l~~l~~~~~~~-----~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDSGKEG-----ELWLPL 102 (102)
T ss_pred EEEEeHHHhhhcCCcC-----cceecC
Confidence 9999999987 33322 277764
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.3e-10 Score=103.69 Aligned_cols=92 Identities=26% Similarity=0.379 Sum_probs=78.7
Q ss_pred EEEEEEEeecCCCCC--CCC--CCCcEEEEEECC---eeeEeeeecCCCC--CeEeEEEEEEecC---------------
Q 001696 287 LYVRVVKAKDLPPSS--ITG--SCDPYVEVKMGN---YKGRTKHFEKRMN--PEWNQVFAFSKER--------------- 342 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d--~~g--~~dpyv~v~~~~---~~~kT~~~~~t~n--P~wne~f~f~v~~--------------- 342 (1026)
|+|.|.+|++++..+ ..| .+||||++.+.+ .+++|.+.++++| |+||+.|.|++..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 799999999966543 356 499999999986 4689999999999 9999999988643
Q ss_pred --------CCCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCC
Q 001696 343 --------IQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRV 378 (1026)
Q Consensus 343 --------~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~ 378 (1026)
.....|.++|||.|.+++|++||++.++|..+....
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 235789999999999999999999999999887654
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.8e-10 Score=100.27 Aligned_cols=91 Identities=34% Similarity=0.566 Sum_probs=79.4
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE---EEEeeeecCCCCceeecEEEEEeeCC-CCEEEEEEEeCCCCCC
Q 001696 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQK---WVRTRTILDTFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGG 689 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~---~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~v~d~~~~~~ 689 (1026)
|.|.|++|++|... ...+..+|||++++++. ..+|+++.++.||.|||.|.|.+..+ ...|.|+|||.+..+
T Consensus 2 l~i~i~~~~~l~~~---~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~- 77 (101)
T smart00239 2 LTVKIISARNLPKK---DKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG- 77 (101)
T ss_pred eEEEEEEeeCCCCC---CCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc-
Confidence 67999999999875 33357899999999764 79999999999999999999999987 888999999988643
Q ss_pred CCccCCCCCCCCCeeEEEEEEcccccCCc
Q 001696 690 GEKQNGSSAVRDSRIGKVRIRLSTLEAHR 718 (1026)
Q Consensus 690 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~ 718 (1026)
.+.+||.+.++|.++..+.
T Consensus 78 ----------~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 78 ----------RDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred ----------CCceeEEEEEEHHHcccCc
Confidence 6899999999999997765
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-09 Score=98.82 Aligned_cols=92 Identities=34% Similarity=0.633 Sum_probs=82.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCce
Q 001696 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNY---KGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDY 363 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~---~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 363 (1026)
|.|+|++|++|......+..+|||++++.+. ..+|+++.++.||.|||+|.|.+.......|.|+|||.+..+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 6799999999988776567899999999875 7999999999999999999999877656899999999998878999
Q ss_pred eEEEEEEccccCCCC
Q 001696 364 LGRVAFDLNEVPTRV 378 (1026)
Q Consensus 364 lG~~~i~l~~l~~~~ 378 (1026)
+|.+.+++.++..+.
T Consensus 82 ~G~~~~~l~~~~~~~ 96 (101)
T smart00239 82 IGQVTIPLSDLLLGG 96 (101)
T ss_pred eEEEEEEHHHcccCc
Confidence 999999999987654
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.2e-09 Score=121.90 Aligned_cols=117 Identities=16% Similarity=0.236 Sum_probs=94.8
Q ss_pred eEEEEEEEEeecCCCC-----CCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEe
Q 001696 285 SYLYVRVVKAKDLPPS-----SITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKD 354 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~-----d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d 354 (1026)
..|.|+|+.|.+++.. +....+||||+|.+.| .+++|.+..++.||+|||+|.|.+..++-..|+|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 5799999999987521 2234689999999976 25678887889999999999999988877889999999
Q ss_pred CCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEE
Q 001696 355 KEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIW 409 (1026)
Q Consensus 355 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 409 (1026)
+|..++++|+|++.+|+..+..+- ++++|.+..+..-..-.|.+.+.
T Consensus 489 ~D~~~~ddfiGQ~~LPv~~Lr~Gy--------R~VpL~~~~g~~l~~~~Ll~~f~ 535 (537)
T PLN02223 489 YEVSTADAFCGQTCLPVSELIEGI--------RAVPLYDERGKACSSTMLLTRFK 535 (537)
T ss_pred cCCCCCCcEEEEEecchHHhcCCc--------eeEeccCCCcCCCCCceEEEEEE
Confidence 999889999999999999998774 78899988775333445555554
|
|
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.99 E-value=5e-09 Score=119.08 Aligned_cols=106 Identities=23% Similarity=0.314 Sum_probs=84.9
Q ss_pred eEEEEEEEEecCCCCC--ccCCCCCCcCcEEEEEECC-----EEEEeeeecCCCCceeecEEEEEeeCC-CCEEEEEEEe
Q 001696 612 GILEVGILGAQGLLPM--KMKDGRGSTDAYCIAKYGQ-----KWVRTRTILDTFNPKWNEQYTWEVYDP-CTVITLGVFD 683 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~--~~~~~~~~~dpyv~v~~g~-----~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~v~d 683 (1026)
..|.|.|+.|++++.. +..+.....||||+|.+.| ...+|.+..++.||+|||.|.|+|..| -..|.|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 5799999999998621 1112234689999998833 347887778899999999999999987 4579999999
Q ss_pred CCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCC
Q 001696 684 NCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHP 731 (1026)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~ 731 (1026)
+|..+ ++++||+..||++.|+.|- ++.+|.+...
T Consensus 489 ~D~~~-----------~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g 522 (537)
T PLN02223 489 YEVST-----------ADAFCGQTCLPVSELIEGI---RAVPLYDERG 522 (537)
T ss_pred cCCCC-----------CCcEEEEEecchHHhcCCc---eeEeccCCCc
Confidence 99754 7899999999999999995 7789875443
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.94 E-value=8e-09 Score=120.25 Aligned_cols=118 Identities=20% Similarity=0.330 Sum_probs=93.7
Q ss_pred eeEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEE
Q 001696 284 MSYLYVRVVKAKDLPPS------SITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFL 352 (1026)
Q Consensus 284 ~~~L~V~v~~a~~L~~~------d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V 352 (1026)
...|.|+|+.|.+++.. +.....||||+|.+-| .+.+|+++.++.||+|||+|.|.+..++-..|+|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 35799999999987531 1112359999999975 467999999999999999999998877667899999
Q ss_pred EeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEE
Q 001696 353 KDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIW 409 (1026)
Q Consensus 353 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 409 (1026)
+|+|..+.++++|++.+++..|..+. +|++|.+..+..-..-.|.+.++
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy--------R~VpL~~~~G~~l~~a~Llv~f~ 597 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGI--------RSVPLHDKKGEKLKNVRLLMRFI 597 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCc--------eeEeCcCCCCCCCCCEEEEEEEE
Confidence 99999889999999999999998774 79999887765322333444444
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.7e-10 Score=129.45 Aligned_cols=126 Identities=29% Similarity=0.563 Sum_probs=107.0
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----------------------------e--eeEeeeecCCCCCe
Q 001696 283 QMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----------------------------Y--KGRTKHFEKRMNPE 331 (1026)
Q Consensus 283 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----------------------------~--~~kT~~~~~t~nP~ 331 (1026)
+...+.|.+..|+||.+++.+|.+|||+...+.. . .+-|.++++|+||.
T Consensus 112 P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPk 191 (1103)
T KOG1328|consen 112 PSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPK 191 (1103)
T ss_pred CcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcc
Confidence 4456788899999999999999999999987631 0 13478889999999
Q ss_pred EeEEEEEEecCCCCCeEEEEEEeCCC---------------------------------CC---CCceeEEEEEEccccC
Q 001696 332 WNQVFAFSKERIQSSMLEVFLKDKEM---------------------------------VG---RDDYLGRVAFDLNEVP 375 (1026)
Q Consensus 332 wne~f~f~v~~~~~~~L~v~V~d~~~---------------------------------~~---~d~~lG~~~i~l~~l~ 375 (1026)
|+|.|.|.+++...+.+.+.+||+|. .+ .|+|+|++.|++.++.
T Consensus 192 W~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP 271 (1103)
T KOG1328|consen 192 WSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIP 271 (1103)
T ss_pred hhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCC
Confidence 99999999999999999999999873 12 3899999999999998
Q ss_pred CCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecccC
Q 001696 376 TRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGTQA 414 (1026)
Q Consensus 376 ~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 414 (1026)
... ..+||.|+..+..+++.|.+++.+|+.+..
T Consensus 272 ~~G------ld~WFkLepRS~~S~VqG~~~LklwLsT~e 304 (1103)
T KOG1328|consen 272 PDG------LDQWFKLEPRSDKSKVQGQVKLKLWLSTKE 304 (1103)
T ss_pred cch------HHHHhccCcccccccccceEEEEEEEeeec
Confidence 653 239999999999999999999999998654
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-08 Score=119.42 Aligned_cols=119 Identities=24% Similarity=0.328 Sum_probs=92.8
Q ss_pred eEEEEEEEEecCCCCCcc---CCCCCCcCcEEEEEE-C----CEEEEeeeecCCCCceeecEEEEEeeCC-CCEEEEEEE
Q 001696 612 GILEVGILGAQGLLPMKM---KDGRGSTDAYCIAKY-G----QKWVRTRTILDTFNPKWNEQYTWEVYDP-CTVITLGVF 682 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~---~~~~~~~dpyv~v~~-g----~~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~v~ 682 (1026)
..|.|.|+.|++|+.... .+.....||||+|.+ | ..+.+|+++.++.||.|||.|.|++..| -..|.|.|+
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~ 549 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR 549 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence 579999999999854211 122334699999987 3 4568999999999999999999999987 457999999
Q ss_pred eCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEEe
Q 001696 683 DNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFT 747 (1026)
Q Consensus 683 d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 747 (1026)
|+|..+ .++++|+..|||+.|..|. +|++|.+.. |.. -+.+.|-++|.
T Consensus 550 D~D~~~-----------~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~--G~~-l~~a~Llv~f~ 597 (599)
T PLN02952 550 EYDMSE-----------KDDFGGQTCLPVSELRPGI---RSVPLHDKK--GEK-LKNVRLLMRFI 597 (599)
T ss_pred ecCCCC-----------CCCeEEEEEcchhHhcCCc---eeEeCcCCC--CCC-CCCEEEEEEEE
Confidence 998754 7999999999999999995 699997543 322 25566666664
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.3e-09 Score=116.19 Aligned_cols=119 Identities=27% Similarity=0.484 Sum_probs=99.9
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecCCCCceeec-EEEEEeeCC---CCEEEEEEEeCCCC
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNE-QYTWEVYDP---CTVITLGVFDNCHL 687 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne-~~~~~v~~~---~~~l~i~v~d~~~~ 687 (1026)
|.|.|.|..|++|+.|+. .....|.||.|++++..+||.+..+++||.||- -|.|.|.|. ...|+|.++|+|..
T Consensus 3 gkl~vki~a~r~lpvmdk--asd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDK--ASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CcceeEEEeccCCccccc--ccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 789999999999999953 345789999999999999999999999999994 589999864 55799999999987
Q ss_pred CCCCccCCCCCCCCCeeEEEEEEcccc----------cCCceEeeeEeeeecCCCCCccCcEEEEEEEE
Q 001696 688 GGGEKQNGSSAVRDSRIGKVRIRLSTL----------EAHRIYTHSYPLLVLHPHGVKKMGELQLAIRF 746 (1026)
Q Consensus 688 ~~~~~~~~~~~~~~~~lG~~~i~l~~l----------~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 746 (1026)
+ .++.||++.|++..| -.|..+..|+|+...- .|. +|+|.+.++.
T Consensus 81 s-----------andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-hgi--rgeinvivkv 135 (1169)
T KOG1031|consen 81 S-----------ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-HGI--RGEINVIVKV 135 (1169)
T ss_pred c-----------cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-ccc--cceeEEEEEE
Confidence 6 789999999999997 2346789999998532 233 5998887764
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-08 Score=120.25 Aligned_cols=125 Identities=18% Similarity=0.302 Sum_probs=103.8
Q ss_pred eeEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECCe-eeEeeeecCC-CCCeEeEEEEEEecCC
Q 001696 284 MSYLYVRVVKAKDLPPSS------------------ITGSCDPYVEVKMGNY-KGRTKHFEKR-MNPEWNQVFAFSKERI 343 (1026)
Q Consensus 284 ~~~L~V~v~~a~~L~~~d------------------~~g~~dpyv~v~~~~~-~~kT~~~~~t-~nP~wne~f~f~v~~~ 343 (1026)
.|.|.|+|.+|++|+.++ ..+.+||||.|.+++. ..||+++.+. .||.|+|+|.+.+...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 478999999999998631 1246799999999986 5799999884 6999999999999877
Q ss_pred CCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCc-ccceEEEEEEecccCc
Q 001696 344 QSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGK-VRGQTMLAIWMGTQAD 415 (1026)
Q Consensus 344 ~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~-~~G~i~l~~~~~~~~d 415 (1026)
. ..+.|+|+|.+.+|. .+||.+.|+..++..+...+ .||++.+.+++.. ....|+++++|.+...
T Consensus 87 ~-~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~-----~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~ 152 (808)
T PLN02270 87 A-SNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVD-----RWVEILDNDKNPIHGGSKIHVKLQYFEVTK 152 (808)
T ss_pred c-ceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccc-----cEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence 4 789999999999954 69999999999999887665 9999999876522 2347999999987654
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.7e-08 Score=111.97 Aligned_cols=181 Identities=19% Similarity=0.188 Sum_probs=128.0
Q ss_pred eEEEeeeecCCCCCCcccceeEEEeeCCCcCeEEEEEEEccC----CCCCceeEEEEEeCcccccccCCCCccceeEEcc
Q 001696 480 QVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVH----ASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLE 555 (1026)
Q Consensus 480 ~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~----~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 555 (1026)
+..+|.++ .+.+||.|-+.|.+.......+.|++.++|.+. ....+++|++...+..+..... ...-+.++
T Consensus 41 e~~rte~i-~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~----~~~~l~~~ 115 (529)
T KOG1327|consen 41 EVGRTEVI-RNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSG----LTGPLLLK 115 (529)
T ss_pred cccceeee-eccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhh----hhhhhhcc
Confidence 34588888 699999999999998887788899999999865 3568999999999998875411 11112222
Q ss_pred cCCCCchhhhhhccccccceEEEEEEecCCccccCCcccccCCccccccccCCCCceEEEEEEEEecCCCCCccCCCCCC
Q 001696 556 KFGFGAIEADRRKELKFSSRVHLRVCLEGGYHVLDESTMYISDQRPTAKQLWKPPVGILEVGILGAQGLLPMKMKDGRGS 635 (1026)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~~~~~~ 635 (1026)
... ....|.+.+.+.-... . -......++|.+|.+. |..++
T Consensus 116 ~~~-----------~~~~g~iti~aee~~~------------------------~-~~~~~~~~~~~~ld~k---d~f~k 156 (529)
T KOG1327|consen 116 PGK-----------NAGSGTITISAEEDES------------------------D-NDVVQFSFRAKNLDPK---DFFSK 156 (529)
T ss_pred cCc-----------cCCcccEEEEeecccc------------------------c-CceeeeeeeeeecCcc---ccccc
Confidence 211 1124555555531110 0 0122334468888775 88999
Q ss_pred cCcEEEEEE--C-CEE---EEeeeecCCCCceeecEEEEEee-----CCCCEEEEEEEeCCCCCCCCccCCCCCCCCCee
Q 001696 636 TDAYCIAKY--G-QKW---VRTRTILDTFNPKWNEQYTWEVY-----DPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRI 704 (1026)
Q Consensus 636 ~dpyv~v~~--g-~~~---~~T~~~~~t~~P~wne~~~~~v~-----~~~~~l~i~v~d~~~~~~~~~~~~~~~~~~~~l 704 (1026)
+|||..++- + +.+ ++|.+++++++|.|- .|.++.. ++...+.|.+||++.-+ ++++|
T Consensus 157 sd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~-~~~i~~~~l~~~~~~~~~~i~~~d~~~~~-----------~~~~i 224 (529)
T KOG1327|consen 157 SDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWA-PFSISLQSLCSKDGNRPIQIECYDYDSNG-----------KHDLI 224 (529)
T ss_pred CCcceEEEEecCCCceeeccccceeccCCCCccc-ccccchhhhcccCCCCceEEEEeccCCCC-----------CcCce
Confidence 999999954 2 332 999999999999997 4555544 34567999999999754 78999
Q ss_pred EEEEEEcccccC
Q 001696 705 GKVRIRLSTLEA 716 (1026)
Q Consensus 705 G~~~i~l~~l~~ 716 (1026)
|++.-++.++..
T Consensus 225 g~~~tt~~~~~~ 236 (529)
T KOG1327|consen 225 GKFQTTLSELQE 236 (529)
T ss_pred eEecccHHHhcc
Confidence 999999999863
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-08 Score=118.36 Aligned_cols=117 Identities=19% Similarity=0.280 Sum_probs=88.7
Q ss_pred ceEEEEeecCCCcc---C---CCCCCCCCEEEEEeC-----CceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEE
Q 001696 2 KLVVEVVDAYDLMP---K---DGEGSASPFAEVDFL-----NQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVS 70 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~---~---~~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~ 70 (1026)
.|.|+|+.+.+++. + +.....||||+|.+- ..+++|++..++.||+|||+|.|.+.-++- ..|+|.
T Consensus 470 ~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPEL---AllRf~ 546 (598)
T PLN02230 470 TLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPEL---ALLRVE 546 (598)
T ss_pred EEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCce---eEEEEE
Confidence 58999999998742 1 122357999999993 356789999999999999999999888764 579999
Q ss_pred EeeCCCCCCCCCccceeEEecCccccccCCceeEEeeccccccccccccccceeEEe
Q 001696 71 IYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYI 127 (1026)
Q Consensus 71 V~d~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 127 (1026)
|+|+|. ...++|+|+..+|+..|.. ..+..+|..+....-..-.|.+++.+
T Consensus 547 V~d~d~--~~~ddfiGQ~~lPv~~Lr~----GyR~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 547 VHEHDI--NEKDDFGGQTCLPVSEIRQ----GIHAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEECCC--CCCCCEEEEEEcchHHhhC----ccceEeccCCCcCCCCCCeeEEEEEe
Confidence 999444 2479999999999998875 45677887765333233456666554
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.4e-08 Score=116.01 Aligned_cols=119 Identities=18% Similarity=0.268 Sum_probs=95.9
Q ss_pred eeEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEE
Q 001696 284 MSYLYVRVVKAKDLPPS------SITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFL 352 (1026)
Q Consensus 284 ~~~L~V~v~~a~~L~~~------d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V 352 (1026)
...|.|+|+.+.+++.. +.....||||+|.+-| .+.+|++..++.||+|||+|.|.+..++-..|+|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 35799999999987421 2223579999999965 357899888999999999999998877778999999
Q ss_pred EeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEe
Q 001696 353 KDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWM 410 (1026)
Q Consensus 353 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 410 (1026)
+|++..++|+|+|+..+++..|..+- +.++|.+..+..-..-.|.+.+++
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~Gy--------R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGI--------HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCcc--------ceEeccCCCcCCCCCCeeEEEEEe
Confidence 99999889999999999999998774 678999887763344566666654
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.5e-08 Score=112.63 Aligned_cols=122 Identities=18% Similarity=0.219 Sum_probs=93.3
Q ss_pred eEEEEEEEEecCCCC---CccCCCCCCcCcEEEEEE-----CCEEEEeeeecCCCCcee-ecEEEEEeeCC-CCEEEEEE
Q 001696 612 GILEVGILGAQGLLP---MKMKDGRGSTDAYCIAKY-----GQKWVRTRTILDTFNPKW-NEQYTWEVYDP-CTVITLGV 681 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~---~~~~~~~~~~dpyv~v~~-----g~~~~~T~~~~~t~~P~w-ne~~~~~v~~~-~~~l~i~v 681 (1026)
..|+|+|+.|++|+. .+..+.....||||+|.+ +...++|+++.++.||.| ||.|.|.+..| -..|.|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999999742 111122345899999987 234589999999999999 99999999987 56799999
Q ss_pred EeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEEee
Q 001696 682 FDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTI 748 (1026)
Q Consensus 682 ~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 748 (1026)
+|+|..+ .+++||+..|||+.|..|- +..+|.+....... ..++.+++.|.+
T Consensus 511 ~D~d~~~-----------~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~-~atLfv~~~~~~ 562 (567)
T PLN02228 511 QDYDNDT-----------QNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYK-NTRLLVSFALDP 562 (567)
T ss_pred EeCCCCC-----------CCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCC-CeEEEEEEEEcC
Confidence 9998654 7899999999999999984 56788754432222 356777777654
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.79 E-value=2e-08 Score=88.30 Aligned_cols=86 Identities=21% Similarity=0.302 Sum_probs=72.0
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-EEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCCCc
Q 001696 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQK-WVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEK 692 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~-~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~ 692 (1026)
|.|.|..|+|+....+....+.+||||.|++++. ++||++ +.||.|||.|.|+| +....+.|.|||...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~V-dk~nEiel~VyDk~~------ 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV-EKNNEEEVIVYDKGG------ 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEe-cCCcEEEEEEEeCCC------
Confidence 5789999999987643225678999999999877 899998 58999999999999 567789999999752
Q ss_pred cCCCCCCCCCeeEEEEEEccccc
Q 001696 693 QNGSSAVRDSRIGKVRIRLSTLE 715 (1026)
Q Consensus 693 ~~~~~~~~~~~lG~~~i~l~~l~ 715 (1026)
+..-.||-.=|.|++|.
T Consensus 71 ------~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 71 ------DQPVPVGLLWLRLSDIA 87 (109)
T ss_pred ------CeecceeeehhhHHHHH
Confidence 35678999999999983
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.7e-08 Score=113.50 Aligned_cols=118 Identities=19% Similarity=0.335 Sum_probs=94.0
Q ss_pred eEEEEEEEEeecCC--C--C--CCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEE
Q 001696 285 SYLYVRVVKAKDLP--P--S--SITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLK 353 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~--~--~--d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~ 353 (1026)
..|.|+|+.+.+++ . . +.....||||+|.+.| .+.+|+++.++.||+|||+|.|.+..++-..|+|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 57999999998753 1 1 1223579999999964 3679999999999999999999987776689999999
Q ss_pred eCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEe
Q 001696 354 DKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWM 410 (1026)
Q Consensus 354 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 410 (1026)
|+|..+.++++|++.+++..|..+- +.++|.+..+..-..-.|.+.+.+
T Consensus 532 d~D~~~~ddfigq~~lPv~~Lr~Gy--------R~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 532 EYDMSEKDDFGGQTCLPVWELSQGI--------RAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred ECCCCCCCcEEEEEEcchhhhhCcc--------ceEEccCCCcCCCCCeeEEEEEEe
Confidence 9998888999999999999998764 678998887753333455555543
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.6e-08 Score=112.30 Aligned_cols=120 Identities=20% Similarity=0.277 Sum_probs=90.1
Q ss_pred eEEEEEEEEecCCCC--Ccc-CCCCCCcCcEEEEEEC-----CEEEEeeeecCCCCceeecEEEEEeeCC-CCEEEEEEE
Q 001696 612 GILEVGILGAQGLLP--MKM-KDGRGSTDAYCIAKYG-----QKWVRTRTILDTFNPKWNEQYTWEVYDP-CTVITLGVF 682 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~--~~~-~~~~~~~dpyv~v~~g-----~~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~v~ 682 (1026)
..|.|.|+.+++++. .+. .+.....||||+|.+- ..+.+|+++.++.||.|||.|+|.+..| -..|.|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 579999999998532 111 1233467999999883 3468999999999999999999999887 567999999
Q ss_pred eCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEE
Q 001696 683 DNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRF 746 (1026)
Q Consensus 683 d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 746 (1026)
|+|..+ .+++||+..||++.|+.|- +..+|.+....... ..++.+++.|
T Consensus 532 d~D~~~-----------~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~-~a~Lfv~~~~ 580 (581)
T PLN02222 532 EYDMSE-----------KDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYK-SVKLLVKVEF 580 (581)
T ss_pred ECCCCC-----------CCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCC-CeeEEEEEEe
Confidence 998754 7899999999999999994 67788754432222 2345444443
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.3e-08 Score=87.92 Aligned_cols=84 Identities=15% Similarity=0.242 Sum_probs=68.0
Q ss_pred eEEEEeecCCCccCC---CCCCCCCEEEEEeCCc-eeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCC
Q 001696 3 LVVEVVDAYDLMPKD---GEGSASPFAEVDFLNQ-LSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRP 78 (1026)
Q Consensus 3 L~V~v~~a~~L~~~~---~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~ 78 (1026)
|.|+|.+|||+.-.+ ..+.+||||.+++++. +.+|++ +.||.|||+|.|.+.. . .++.|.|||...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk-~----nEiel~VyDk~~-- 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK-N----NEEEVIVYDKGG-- 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC-C----cEEEEEEEeCCC--
Confidence 789999999998776 5788999999999875 888888 5999999999999954 2 589999999322
Q ss_pred CCCCccceeEEecCccccc
Q 001696 79 IPGRHFLGRVRIPCSNLVR 97 (1026)
Q Consensus 79 ~~~d~~lG~~~i~l~~l~~ 97 (1026)
...-.+|..-+.++++..
T Consensus 71 -~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 71 -DQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred -CeecceeeehhhHHHHHH
Confidence 234577888888777654
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.6e-08 Score=111.99 Aligned_cols=120 Identities=19% Similarity=0.289 Sum_probs=97.4
Q ss_pred eEEEEEEEEeecCCC---CC---CCCCCCcEEEEEECC-----eeeEeeeecCCCCCeE-eEEEEEEecCCCCCeEEEEE
Q 001696 285 SYLYVRVVKAKDLPP---SS---ITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEW-NQVFAFSKERIQSSMLEVFL 352 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~---~d---~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~w-ne~f~f~v~~~~~~~L~v~V 352 (1026)
..|.|+|+.|.+|+. .+ .....||||+|.+.+ .+++|+++.++.||+| ||+|.|.+..++-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 469999999998731 11 123479999999865 3579999988899999 99999998777668999999
Q ss_pred EeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecc
Q 001696 353 KDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGT 412 (1026)
Q Consensus 353 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 412 (1026)
+|++..+.++++|++.+++..|..+- +.++|.+..+..-....|.+.+.+.+
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~GY--------R~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSGV--------RAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCCe--------eEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 99998889999999999999998763 78899988876444566887776643
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.1e-08 Score=113.61 Aligned_cols=118 Identities=20% Similarity=0.401 Sum_probs=96.6
Q ss_pred eEEEEEEEEeecCCCC-CC---CCCCCcEEEEEECC-----eeeEee-eecCCCCCeEeEEEEEEecCCCCCeEEEEEEe
Q 001696 285 SYLYVRVVKAKDLPPS-SI---TGSCDPYVEVKMGN-----YKGRTK-HFEKRMNPEWNQVFAFSKERIQSSMLEVFLKD 354 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~-d~---~g~~dpyv~v~~~~-----~~~kT~-~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d 354 (1026)
..|.|.|+.+.++.+. +. ...+||||.|++-| ...+|+ +..++-||.|+|+|.|.+..++-..|+|.|+|
T Consensus 616 ~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d 695 (746)
T KOG0169|consen 616 KTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHD 695 (746)
T ss_pred ceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEe
Confidence 3799999999976543 22 24689999999976 367899 45568899999999999988877899999999
Q ss_pred CCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEe
Q 001696 355 KEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWM 410 (1026)
Q Consensus 355 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 410 (1026)
++..++|+|+|+.++|+..|..+- +-++|.+..|..-....|.+.+.+
T Consensus 696 ~d~~~~ddF~GQ~tlP~~~L~~Gy--------RhVpL~~~~G~~~~~asLfv~i~~ 743 (746)
T KOG0169|consen 696 YDYIGKDDFIGQTTLPVSELRQGY--------RHVPLLSREGEALSSASLFVRIAI 743 (746)
T ss_pred cCCCCcccccceeeccHHHhhCce--------eeeeecCCCCccccceeEEEEEEE
Confidence 999999999999999999998774 668999887664455667766655
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.2e-08 Score=110.54 Aligned_cols=120 Identities=25% Similarity=0.419 Sum_probs=89.6
Q ss_pred CceEEEEeecCCCccCCCCCCCCCEEEEEeC-----C-ceeeeccCCCCCCcccc-eeEEEeccCCCCCccceEEEEEee
Q 001696 1 MKLVVEVVDAYDLMPKDGEGSASPFAEVDFL-----N-QLSKTKTIPKNLNPVWN-QKLLFDFDQTKSHNHLRIEVSIYH 73 (1026)
Q Consensus 1 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~-----~-~~~~T~~~~~t~nP~Wn-e~f~f~~~~~~~~~~~~L~~~V~d 73 (1026)
++|.|.|++||.|+ +.+-|.+.|||+|.+- . ..++|.++.+.+||+|| |+|+|.+.+++- ..|+|.|+|
T Consensus 1065 ~~lsv~vigaRHL~-k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~---A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLP-KLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEF---AFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeeccccc-cCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCce---EEEEEEEec
Confidence 46899999999996 4445677899999993 2 45566667999999999 999999999985 679999999
Q ss_pred CCCCCCCCCccceeEEecCccccccCCceeEEeeccccccccccccccceeEEecCC
Q 001696 74 HERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYISPQ 130 (1026)
Q Consensus 74 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 130 (1026)
++++ +...|||++.+|+..+.. ..+..+|...-...-...+|.+.+...+.
T Consensus 1141 -eDmf-s~~~FiaqA~yPv~~ik~----GfRsVpLkN~ySEdlELaSLLv~i~m~~~ 1191 (1267)
T KOG1264|consen 1141 -EDMF-SDPNFLAQATYPVKAIKS----GFRSVPLKNGYSEDLELASLLVFIEMRPV 1191 (1267)
T ss_pred -cccc-CCcceeeeeecchhhhhc----cceeeecccCchhhhhhhhheeeeEeccc
Confidence 5554 355699999999988764 34557777643222333556666665543
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-07 Score=109.96 Aligned_cols=120 Identities=24% Similarity=0.383 Sum_probs=92.1
Q ss_pred EEEEEEEEecCCCCCccCC-CCCCcCcEEEEEECC-----EEEEeeee-cCCCCceeecEEEEEeeCC-CCEEEEEEEeC
Q 001696 613 ILEVGILGAQGLLPMKMKD-GRGSTDAYCIAKYGQ-----KWVRTRTI-LDTFNPKWNEQYTWEVYDP-CTVITLGVFDN 684 (1026)
Q Consensus 613 ~L~v~v~~a~~L~~~~~~~-~~~~~dpyv~v~~g~-----~~~~T~~~-~~t~~P~wne~~~~~v~~~-~~~l~i~v~d~ 684 (1026)
.|.|.|+.++|+.....+. ....+||||.|++-| ...+|+++ .++-||.|+|.|+|++..| -.-|.+.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999877643222 235689999999833 34899955 5788999999999999998 56799999999
Q ss_pred CCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEEe
Q 001696 685 CHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFT 747 (1026)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 747 (1026)
|..+ +|+|+|+..||++.|..|- +-.||.+..+.... ..++-+++.|.
T Consensus 697 d~~~-----------~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~~-~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIG-----------KDDFIGQTTLPVSELRQGY---RHVPLLSREGEALS-SASLFVRIAIV 744 (746)
T ss_pred CCCC-----------cccccceeeccHHHhhCce---eeeeecCCCCcccc-ceeEEEEEEEe
Confidence 9864 8999999999999999984 55777754322222 35666666553
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.9e-08 Score=107.17 Aligned_cols=110 Identities=24% Similarity=0.394 Sum_probs=94.1
Q ss_pred EEEEEEEEEeEecCCCCCC-CCCCcEEEEEECCeEEEeeeecCCCCCCcccce-eEEEeeCC--CcCeEEEEEEEccCCC
Q 001696 448 WYLRVNVIEAQDIVPNDRN-RLPEGFVKVQVGNQVLKTKICPTPTTNPLWNED-LVFVAAEP--FEEQLFLTVEDRVHAS 523 (1026)
Q Consensus 448 ~~l~V~I~~a~~L~~~d~~-~~~dpyV~v~lg~~~~kT~~~~~~t~nP~wne~-f~f~v~~~--~~~~L~i~V~d~d~~~ 523 (1026)
|.|.|.|..||+|+.+|.. ...|.||++++++..+||.+. .+++||.||.. |.|.|.+. +++.|.|++.|+|..+
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf-~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys 81 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVF-LKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS 81 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhh-hhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence 4588999999999999975 468999999999999999998 79999999965 88887554 7889999999999999
Q ss_pred CCceeEEEEEeCcccccccC------CCCccceeEEcccCC
Q 001696 524 KDEVLGKISLPLHIFEKRLD------HRPVHSRWFNLEKFG 558 (1026)
Q Consensus 524 ~d~~lG~~~i~l~~l~~~~~------~~~~~~~w~~L~~~~ 558 (1026)
.++.||.+.|++..+..... .......|+++.+.-
T Consensus 82 andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti 122 (1169)
T KOG1031|consen 82 ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI 122 (1169)
T ss_pred cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec
Confidence 99999999999998764421 235678899998874
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.9e-07 Score=109.07 Aligned_cols=118 Identities=19% Similarity=0.274 Sum_probs=91.9
Q ss_pred eEEEEEEEEecCCCCCc---cCCCCCCcCcEEEEEECCEE-EEeeeecCCCCceeecEEEEEeeCCC-CEEEEEEEeCCC
Q 001696 612 GILEVGILGAQGLLPMK---MKDGRGSTDAYCIAKYGQKW-VRTRTILDTFNPKWNEQYTWEVYDPC-TVITLGVFDNCH 686 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~---~~~~~~~~dpyv~v~~g~~~-~~T~~~~~t~~P~wne~~~~~v~~~~-~~l~i~v~d~~~ 686 (1026)
|.|.++|++|+-+...- ..-+. ..||||.|.+++.+ .|| .+..||.|||.|.+++..+. ..++|.|.|
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~-~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~--- 82 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLN-GKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT--- 82 (758)
T ss_pred cceEEEEEEeeehhhcccccccccC-CCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec---
Confidence 89999999998332210 00112 23999999998766 688 66679999999999999987 689999999
Q ss_pred CCCCCccCCCCCCCCCeeEEEEEEcccccCCce-EeeeEeeeecCCCCCccCcEEEEEEEEeecc
Q 001696 687 LGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRI-YTHSYPLLVLHPHGVKKMGELQLAIRFTIFS 750 (1026)
Q Consensus 687 ~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~ 750 (1026)
...+||++.||+.+|..|.. ++.|+++.....+-.+ ..+|++.++|.+..
T Consensus 83 -------------~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~ 133 (758)
T PLN02352 83 -------------KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNP-ELKLRFMLWFRPAE 133 (758)
T ss_pred -------------CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCC-CCEEEEEEEEEEhh
Confidence 25799999999999998865 8999999865543332 25999999998753
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.6e-07 Score=101.62 Aligned_cols=181 Identities=15% Similarity=0.242 Sum_probs=129.8
Q ss_pred eeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCC----CCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeec
Q 001696 318 KGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEM----VGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLED 393 (1026)
Q Consensus 318 ~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~----~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 393 (1026)
..+|.++.+.+||.|-+.|.+...-...+.|++.++|.+. ....+|+|++...+..+....... .-+.++.
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~-----~~l~~~~ 116 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLT-----GPLLLKP 116 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhh-----hhhhccc
Confidence 4589999999999999998877654446789999998654 357789999999999887654322 1122222
Q ss_pred CCCCCcccceEEEEEEecccCchhhhhcccccCccccCCCccccccccccCCceEEEEEEEEEeEecCCCCCCCCCCcEE
Q 001696 394 RRGEGKVRGQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFV 473 (1026)
Q Consensus 394 ~~~~~~~~G~i~l~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~r~~~~~~p~~~~l~V~I~~a~~L~~~d~~~~~dpyV 473 (1026)
+.....|.|.+.+.-....+ ....-.++|++|...|..+++|||.
T Consensus 117 --~~~~~~g~iti~aee~~~~~---------------------------------~~~~~~~~~~~ld~kd~f~ksd~~l 161 (529)
T KOG1327|consen 117 --GKNAGSGTITISAEEDESDN---------------------------------DVVQFSFRAKNLDPKDFFSKSDPYL 161 (529)
T ss_pred --CccCCcccEEEEeecccccC---------------------------------ceeeeeeeeeecCcccccccCCcce
Confidence 12234577766552111000 1223345589999999999999999
Q ss_pred EEEE--CC----eEEEeeeecCCCCCCcccceeEEEeeCC----CcCeEEEEEEEccCCCCCceeEEEEEeCccccc
Q 001696 474 KVQV--GN----QVLKTKICPTPTTNPLWNEDLVFVAAEP----FEEQLFLTVEDRVHASKDEVLGKISLPLHIFEK 540 (1026)
Q Consensus 474 ~v~l--g~----~~~kT~~~~~~t~nP~wne~f~f~v~~~----~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~ 540 (1026)
.++- +. ..++|.++ +++++|.|.. |.+..... .+..+.+.+||++..+++++||++..++.++..
T Consensus 162 ~~~~~~~d~s~~~~~~tEv~-~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 162 EFYKRVDDGSTQMLYRTEVV-KNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred EEEEecCCCceeecccccee-ccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 8876 22 46799999 7999999988 44443222 246889999999998999999999999998864
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.3e-07 Score=104.83 Aligned_cols=119 Identities=21% Similarity=0.343 Sum_probs=93.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----ee-eEeeeecCCCCCeEe-EEEEEEecCCCCCeEEEEEEeCCC
Q 001696 285 SYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YK-GRTKHFEKRMNPEWN-QVFAFSKERIQSSMLEVFLKDKEM 357 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~-~kT~~~~~t~nP~wn-e~f~f~v~~~~~~~L~v~V~d~~~ 357 (1026)
-.|.|.|+.||.|+... .|...|||.|.+-| .+ ++|.++.+++||+|| |.|.|.+.+++-..|+|.|+|.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 47899999999998544 34577999999865 23 455667889999999 999999999988999999999999
Q ss_pred CCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecc
Q 001696 358 VGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGT 412 (1026)
Q Consensus 358 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 412 (1026)
++...|||++.+|+..+..+- +-.+|.+.-.+.-....|.+.+...+
T Consensus 1144 fs~~~FiaqA~yPv~~ik~Gf--------RsVpLkN~ySEdlELaSLLv~i~m~~ 1190 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGF--------RSVPLKNGYSEDLELASLLVFIEMRP 1190 (1267)
T ss_pred cCCcceeeeeecchhhhhccc--------eeeecccCchhhhhhhhheeeeEecc
Confidence 998899999999999997653 45677765433334455666655444
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.4e-07 Score=110.09 Aligned_cols=113 Identities=27% Similarity=0.360 Sum_probs=96.3
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEE---ecCCC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFS---KERIQ 344 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~---v~~~~ 344 (1026)
.+++.|. .+.|+|.|..|++|+-..-+..+||||+.++.+ .+.||+++++|.||.|||...+. .+.+.
T Consensus 1516 ~LsIsY~----~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~ 1591 (1639)
T KOG0905|consen 1516 KLSISYN----NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQ 1591 (1639)
T ss_pred EEEEEEc----CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhh
Confidence 7788884 689999999999997665566799999999975 26899999999999999998765 45556
Q ss_pred CCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecC
Q 001696 345 SSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDR 394 (1026)
Q Consensus 345 ~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 394 (1026)
...|+++||..+.+..+.++|.+.|+|.++....... .||.|...
T Consensus 1592 qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~-----~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1592 QRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESV-----GWYNLGAC 1636 (1639)
T ss_pred hheeeeeeecccceeeeeeeeeeecchhhcchhhhhc-----ceeecccc
Confidence 7899999999999989999999999999998765543 89999754
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.7e-06 Score=98.28 Aligned_cols=119 Identities=20% Similarity=0.336 Sum_probs=92.2
Q ss_pred eeEEEEEEEEeecCCCC----CCC-CCCCcEEEEEECCe-eeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCC
Q 001696 284 MSYLYVRVVKAKDLPPS----SIT-GSCDPYVEVKMGNY-KGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEM 357 (1026)
Q Consensus 284 ~~~L~V~v~~a~~L~~~----d~~-g~~dpyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~ 357 (1026)
.|.|.++|.+|+-+... ... ...+|||.|.+++. ..|| .+..||.|+|+|.+.+.......+.|+|+|
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~--- 82 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT--- 82 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec---
Confidence 47899999999843221 111 12399999999986 4688 556699999999999987754689999999
Q ss_pred CCCCceeEEEEEEccccCCCCC-CCCCCCCEEEEeecCCCCCcccceEEEEEEecccCc
Q 001696 358 VGRDDYLGRVAFDLNEVPTRVP-PDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGTQAD 415 (1026)
Q Consensus 358 ~~~d~~lG~~~i~l~~l~~~~~-~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~d 415 (1026)
...+||.+.|+..++..+.. .+ .||++.+.+++......|+++++|.+...
T Consensus 83 --~~~~ig~~~~p~~~~~~g~~~~~-----~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 134 (758)
T PLN02352 83 --KCSILGRFHIQAHQIVTEASFIN-----GFFPLIMENGKPNPELKLRFMLWFRPAEL 134 (758)
T ss_pred --CCeEEEEEEEEHHHhhCCCcccc-----eEEEcccCCCCCCCCCEEEEEEEEEEhhh
Confidence 36799999999999988754 44 99999998765322248999999987654
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.1e-06 Score=79.51 Aligned_cols=112 Identities=25% Similarity=0.358 Sum_probs=80.6
Q ss_pred EEEEEEEecCCCCCccC----C------CCCCcCcEEEEEE----CCEEEEeeeecCCCCceeecEEEEEee--------
Q 001696 614 LEVGILGAQGLLPMKMK----D------GRGSTDAYCIAKY----GQKWVRTRTILDTFNPKWNEQYTWEVY-------- 671 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~----~------~~~~~dpyv~v~~----g~~~~~T~~~~~t~~P~wne~~~~~v~-------- 671 (1026)
|.|.|++|.||+++-.+ | ..-..++||++.+ +++..+|+++.++..|.|+-.++|++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 46899999999874221 1 1124699999985 578899999999999999999999885
Q ss_pred CC--------CCEEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccC-CceEeeeEee
Q 001696 672 DP--------CTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEA-HRIYTHSYPL 726 (1026)
Q Consensus 672 ~~--------~~~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~-~~~~~~~~~L 726 (1026)
.. ...|.++||+...-+.+.- ..-...+|-.||++.||+.+|-. ...++.|||+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~-~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDT-IKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccce-eccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 11 3479999999876431100 00113467789999999999843 3456899985
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.3e-06 Score=104.06 Aligned_cols=107 Identities=23% Similarity=0.299 Sum_probs=87.8
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEeC-----CceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCC
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFL-----NQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHER 76 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~ 76 (1026)
+|.|-|..|++|.--..+..+||||+.++. ..+++|+++++|.||.|||...+.-.+.+.++...|.+.||. .
T Consensus 1525 ~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls--~ 1602 (1639)
T KOG0905|consen 1525 TLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS--N 1602 (1639)
T ss_pred eEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec--c
Confidence 588999999999544445689999999993 257899999999999999999999665555666789999999 3
Q ss_pred CCCCCCccceeEEecCccccccCCceeEEeecccc
Q 001696 77 RPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKK 111 (1026)
Q Consensus 77 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 111 (1026)
.....+.|||.+.|+|.++....+ ...||+|...
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~kE-~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKE-SVGWYNLGAC 1636 (1639)
T ss_pred cceeeeeeeeeeecchhhcchhhh-hcceeecccc
Confidence 334578899999999998877654 6689999764
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.3e-06 Score=74.76 Aligned_cols=106 Identities=21% Similarity=0.428 Sum_probs=79.6
Q ss_pred eEEEEeecCCCccC-------C--C----CCCCCCEEEEEe----CCceeeeccCCCCCCcccceeEEEeccCC------
Q 001696 3 LVVEVVDAYDLMPK-------D--G----EGSASPFAEVDF----LNQLSKTKTIPKNLNPVWNQKLLFDFDQT------ 59 (1026)
Q Consensus 3 L~V~v~~a~~L~~~-------~--~----~g~~dpyv~v~~----~~~~~~T~~~~~t~nP~Wne~f~f~~~~~------ 59 (1026)
|.|.|++|.||... + . .-.-|+||++.+ +++.++|+++-+|..|+||-+++|.+.-.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 57899999999742 1 1 113589999996 56889999999999999999999997621
Q ss_pred ------CCCccceEEEEEeeCCCCC--------CCCCccceeEEecCccccccCCceeEEeec
Q 001696 60 ------KSHNHLRIEVSIYHHERRP--------IPGRHFLGRVRIPCSNLVRKGEEVYQRFPL 108 (1026)
Q Consensus 60 ------~~~~~~~L~~~V~d~d~~~--------~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L 108 (1026)
+.++...+.|+||+-...+ ..+|=.||.+.||+.+|.........||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1224468999999932221 123458999999999998877668889875
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0013 Score=72.41 Aligned_cols=238 Identities=14% Similarity=0.148 Sum_probs=158.3
Q ss_pred EEEEEEEeEecCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCCcccceeEEEeeCC-------CcCeEEEEEEEcc-C
Q 001696 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEP-------FEEQLFLTVEDRV-H 521 (1026)
Q Consensus 450 l~V~I~~a~~L~~~d~~~~~dpyV~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~-------~~~~L~i~V~d~d-~ 521 (1026)
+.|.|++|++.+... .-.-.|..+++++...|..+ ..+..|.||..+.+.+... +...|+++.|..+ .
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv-~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~ 77 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPV-PHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS 77 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCC-CCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence 678999999998763 23578999999999999988 6999999999999986332 4568999999988 5
Q ss_pred CCCCceeEEEEEeCccc-ccccCCCCccceeEEcccCCCCchhhhhhccccccceEEEEEEecCCccccCC---------
Q 001696 522 ASKDEVLGKISLPLHIF-EKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFSSRVHLRVCLEGGYHVLDE--------- 591 (1026)
Q Consensus 522 ~~~d~~lG~~~i~l~~l-~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~g~l~l~~~~~~~~~~~~~--------- 591 (1026)
.+..+.||.+.++|... .....+.....+||+|-+... +..+..-+|.+.+++.......+.
T Consensus 78 ~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~--------~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~ 149 (340)
T PF12416_consen 78 TGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS--------KYKKHKPELLLSLSIEDDSKPQTPDFESFKAKP 149 (340)
T ss_pred CCcceeccEEEEEccccccccccccccCCCeeEcccccc--------ccccCCccEEEEEEEeccccccCCccccccccC
Confidence 67889999999999998 111223356789999998831 122345577777777543321000
Q ss_pred cccccC-------Cccccc--ccc-----C--------CCCceEEEEEEEEecCCCCCccCC---CCCCcCcEEEEEECC
Q 001696 592 STMYIS-------DQRPTA--KQL-----W--------KPPVGILEVGILGAQGLLPMKMKD---GRGSTDAYCIAKYGQ 646 (1026)
Q Consensus 592 ~~~~~~-------d~~~~~--~~~-----~--------~~~~g~L~v~v~~a~~L~~~~~~~---~~~~~dpyv~v~~g~ 646 (1026)
.+.... ...+.. ..+ + -...=.|.|+|-.|++|..+-... ..+....|....+=|
T Consensus 150 ~p~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllG 229 (340)
T PF12416_consen 150 APPRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLG 229 (340)
T ss_pred CCcccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecC
Confidence 000000 001100 000 0 112345888999999987652111 113356677777766
Q ss_pred EEEEeeeecCCCCcee--ecEEEEEeeC----------CCCEEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccc
Q 001696 647 KWVRTRTILDTFNPKW--NEQYTWEVYD----------PCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTL 714 (1026)
Q Consensus 647 ~~~~T~~~~~t~~P~w--ne~~~~~v~~----------~~~~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l 714 (1026)
.-..|.......+|.| ++...+.+.. ....|.|.++. .+..||.+.|++..+
T Consensus 230 n~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~----------------g~~~Lg~~~v~l~~L 293 (340)
T PF12416_consen 230 NDVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC----------------GNQSLGSTSVPLQPL 293 (340)
T ss_pred cEeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee----------------CCcEEEEEEEEhhhc
Confidence 6778888888888866 4444466642 13468888877 367899999999998
Q ss_pred c
Q 001696 715 E 715 (1026)
Q Consensus 715 ~ 715 (1026)
-
T Consensus 294 l 294 (340)
T PF12416_consen 294 L 294 (340)
T ss_pred c
Confidence 4
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0025 Score=70.10 Aligned_cols=245 Identities=16% Similarity=0.230 Sum_probs=155.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecC-------CCCCeEEEEEEeCC-CC
Q 001696 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKER-------IQSSMLEVFLKDKE-MV 358 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~-------~~~~~L~v~V~d~~-~~ 358 (1026)
+.|+|++|+|.+... ...-.+..++++....|-.+.++..|.||..+.|.++. .+...|++++|..+ .-
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 578999999998763 34667889999999999999999999999999998642 34678999999887 45
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCC-CcccceEEEEEEecccCchhhhhcc---cccCcccc----
Q 001696 359 GRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGE-GKVRGQTMLAIWMGTQADEAFAEAW---HSDASSVY---- 430 (1026)
Q Consensus 359 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~i~l~~~~~~~~d~~~~~~~---~~d~~~~~---- 430 (1026)
+..+.||.+.++|....-.........+.||+|...+.+ .+.+-+|.+.+...........+.. ....+...
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~~ 158 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHVP 158 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCcccCCCc
Confidence 678899999999998811111112355699999887432 2356778888776654432111000 00000000
Q ss_pred -----------------CCCccccccccccCCceEEEEEEEEEeEecCCCC----C--CCCCCcEEEEEECCeEEEeeee
Q 001696 431 -----------------GEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPND----R--NRLPEGFVKVQVGNQVLKTKIC 487 (1026)
Q Consensus 431 -----------------~~~~~~~r~~~~~~p~~~~l~V~I~~a~~L~~~d----~--~~~~dpyV~v~lg~~~~kT~~~ 487 (1026)
.++...+... ...-..+.|.|+|..|++|...- . .+....|....+-+....|..-
T Consensus 159 ~~~~~~~~~~l~~~l~~~eg~lQIGp~-~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F 237 (340)
T PF12416_consen 159 PPNSLLSPATLIPVLLEDEGLLQIGPP-DLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPF 237 (340)
T ss_pred ccccccCccceeEEEccCCceEeeCCc-hhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeec
Confidence 0000000000 00224567999999999987652 1 1234566777775555666655
Q ss_pred cCCCCCCccc--ceeEEEeeCC---------CcCeEEEEEEEccCCCCCceeEEEEEeCcccccc
Q 001696 488 PTPTTNPLWN--EDLVFVAAEP---------FEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKR 541 (1026)
Q Consensus 488 ~~~t~nP~wn--e~f~f~v~~~---------~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~ 541 (1026)
+...+|.|. +.-.+.+... ....|.|.++. .+..||.+.|++..+...
T Consensus 238 -~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~-----g~~~Lg~~~v~l~~Ll~~ 296 (340)
T PF12416_consen 238 -KSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC-----GNQSLGSTSVPLQPLLPK 296 (340)
T ss_pred -cccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee-----CCcEEEEEEEEhhhccCC
Confidence 466677553 3222443221 23466666665 377899999999998744
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00011 Score=87.29 Aligned_cols=89 Identities=18% Similarity=0.246 Sum_probs=76.0
Q ss_pred CceEEEEEEEEEeEecCCCCCCCCCCcE-EEEEECCeEEEeeeecCCCCCCcccceeEEEeeCCCcCeEEEEEEEccCCC
Q 001696 445 PKLWYLRVNVIEAQDIVPNDRNRLPEGF-VKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHAS 523 (1026)
Q Consensus 445 p~~~~l~V~I~~a~~L~~~d~~~~~dpy-V~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~ 523 (1026)
+-.|.+.+++++|+ ++. .|+| +.+.+|.+++||.+. ++|.||+||+...|.+.........|.|||.++++
T Consensus 51 ~~~~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~f~t~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 122 (644)
T PLN02964 51 DFSGIALLTLVGAE----MKF---KDKWLACVSFGEQTFRTETS-DSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLS 122 (644)
T ss_pred cccCeEEEEeehhh----hcc---CCcEEEEEEecceeeeeccc-cccCCcccchhhceEeccCCcceEEEEEEecCCCC
Confidence 34567999999997 332 4887 566789999999999 79999999999999987776667899999999999
Q ss_pred CCceeEEEEEeCcccccc
Q 001696 524 KDEVLGKISLPLHIFEKR 541 (1026)
Q Consensus 524 ~d~~lG~~~i~l~~l~~~ 541 (1026)
.++++|.|+++|.++..+
T Consensus 123 ~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 123 KNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred HHHhhhheeecHhhccHH
Confidence 999999999999887754
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0001 Score=79.32 Aligned_cols=117 Identities=21% Similarity=0.280 Sum_probs=93.8
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEE---C--CEEEEeeeecCCCCceeecEEEEEeeCC------------CC
Q 001696 613 ILEVGILGAQGLLPMKMKDGRGSTDAYCIAKY---G--QKWVRTRTILDTFNPKWNEQYTWEVYDP------------CT 675 (1026)
Q Consensus 613 ~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~---g--~~~~~T~~~~~t~~P~wne~~~~~v~~~------------~~ 675 (1026)
.|++.|+++++++.. .+....|.|+++++ + .++.+|.++++|.+|.|+|.|.+.+... ..
T Consensus 368 elel~ivrg~~~pvp---~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVP---GGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred HhHHHHhhcccCCCC---CCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 577888999988764 34456799999987 2 4568999999999999999999999752 12
Q ss_pred EEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCcc-CcEEEEEEEE
Q 001696 676 VITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKK-MGELQLAIRF 746 (1026)
Q Consensus 676 ~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~-~G~i~l~~~f 746 (1026)
-+.|++|....+ ...|.++|++.|.|..|++...+...|+|. .|++. .|.+++.++.
T Consensus 445 g~kfeifhkggf----------~rSdkl~gt~nikle~Len~cei~e~~~l~----DGRK~vGGkLevKvRi 502 (523)
T KOG3837|consen 445 GKKFEIFHKGGF----------NRSDKLTGTGNIKLEILENMCEICEYLPLK----DGRKAVGGKLEVKVRI 502 (523)
T ss_pred CeeEEEeecccc----------ccccceeceeeeeehhhhcccchhhceecc----ccccccCCeeEEEEEE
Confidence 489999996544 468999999999999999998888899997 34443 6888877765
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00012 Score=61.61 Aligned_cols=96 Identities=10% Similarity=0.167 Sum_probs=70.3
Q ss_pred EEEEeecCCCccCC-CCCCCCCEEE--EEeCC-ceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCC
Q 001696 4 VVEVVDAYDLMPKD-GEGSASPFAE--VDFLN-QLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPI 79 (1026)
Q Consensus 4 ~V~v~~a~~L~~~~-~~g~~dpyv~--v~~~~-~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~ 79 (1026)
-|+|+.|++|..-. ....+.-|++ +++.+ ...+|.++....||+|+|+|.|.+... .++.-.|.|.|++ ..
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~-qL~~V~L~fsv~~--~~-- 76 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQ-NLQTVRLVFKIQT--QT-- 76 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHh-hccceEEEEEeec--cC--
Confidence 47899999996433 2334445665 44555 567899999999999999999998753 3455789999999 32
Q ss_pred CCCccceeEEecCccccccCCceeEEe
Q 001696 80 PGRHFLGRVRIPCSNLVRKGEEVYQRF 106 (1026)
Q Consensus 80 ~~d~~lG~~~i~l~~l~~~~~~~~~w~ 106 (1026)
.+..-||.+.+.+.++-... ...|.
T Consensus 77 ~RKe~iG~~sL~l~s~geeE--~~HW~ 101 (103)
T cd08684 77 PRKRTIGECSLSLRTLSTQE--TDHWL 101 (103)
T ss_pred CccceeeEEEeecccCCHHH--hhhhh
Confidence 36789999999988876442 44553
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0002 Score=60.31 Aligned_cols=87 Identities=15% Similarity=0.261 Sum_probs=66.3
Q ss_pred EEEEEeEecCCCC-CCCCCCcEEEEEE--CC-eEEEeeeecCCCCCCcccceeEEEeeCC--CcCeEEEEEEEccCCCCC
Q 001696 452 VNVIEAQDIVPND-RNRLPEGFVKVQV--GN-QVLKTKICPTPTTNPLWNEDLVFVAAEP--FEEQLFLTVEDRVHASKD 525 (1026)
Q Consensus 452 V~I~~a~~L~~~d-~~~~~dpyV~v~l--g~-~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~d~~~~d 525 (1026)
+++++|+||.-.. .+..+..||+-.+ .+ ...||++. ....||.|+|+|.|.+... .+-.|.|+|+. ...+.
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~r-rgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAK-EGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhh-cCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 6889999997433 3344566776655 33 46788888 7999999999999987544 55578888887 45788
Q ss_pred ceeEEEEEeCcccccc
Q 001696 526 EVLGKISLPLHIFEKR 541 (1026)
Q Consensus 526 ~~lG~~~i~l~~l~~~ 541 (1026)
..||.|.+.++++-.+
T Consensus 80 e~iG~~sL~l~s~gee 95 (103)
T cd08684 80 RTIGECSLSLRTLSTQ 95 (103)
T ss_pred ceeeEEEeecccCCHH
Confidence 9999999999987644
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00022 Score=76.38 Aligned_cols=106 Identities=25% Similarity=0.378 Sum_probs=86.2
Q ss_pred ceEEEEeecCCCccCCCC-CCCCCEEEEEeCC-----ceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCC
Q 001696 2 KLVVEVVDAYDLMPKDGE-GSASPFAEVDFLN-----QLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHE 75 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~-g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d 75 (1026)
.|.|.|++|++|..+-.. ..++|||+|++-. .+.+|+...+|++|.+-+...|.-..+. ..|.++||. |
T Consensus 270 ~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~----k~Lq~tv~g-d 344 (405)
T KOG2060|consen 270 DLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPG----KYLQGTVWG-D 344 (405)
T ss_pred ceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCc----cEEEEEEec-c
Confidence 378999999999776543 3789999999932 5778999999999999999999876665 689999998 3
Q ss_pred CCCCCCCccceeEEecCccccccCCceeEEeeccccc
Q 001696 76 RRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKW 112 (1026)
Q Consensus 76 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 112 (1026)
-.....+.|+|.+.+-+.++.........||+|-+.+
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 3223467899999999999987776688999998754
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00029 Score=83.63 Aligned_cols=88 Identities=17% Similarity=0.252 Sum_probs=75.6
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcE-EEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCc
Q 001696 284 MSYLYVRVVKAKDLPPSSITGSCDPY-VEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDD 362 (1026)
Q Consensus 284 ~~~L~V~v~~a~~L~~~d~~g~~dpy-v~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 362 (1026)
.|...+++++|+ ++. .|+| +.+.+|.+.+||.+.++|.||+||+...|.+.........|.|||.+.++.++
T Consensus 53 ~~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~ 125 (644)
T PLN02964 53 SGIALLTLVGAE----MKF---KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNT 125 (644)
T ss_pred cCeEEEEeehhh----hcc---CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHH
Confidence 478999999998 332 4776 67788889999999999999999999999987666667899999999999999
Q ss_pred eeEEEEEEccccCCCC
Q 001696 363 YLGRVAFDLNEVPTRV 378 (1026)
Q Consensus 363 ~lG~~~i~l~~l~~~~ 378 (1026)
++|.|+++|.++...+
T Consensus 126 lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 126 LVGYCELDLFDFVTQE 141 (644)
T ss_pred hhhheeecHhhccHHH
Confidence 9999999998876553
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00013 Score=78.09 Aligned_cols=106 Identities=22% Similarity=0.292 Sum_probs=87.5
Q ss_pred CceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE-CC----EEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEE-e
Q 001696 610 PVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKY-GQ----KWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVF-D 683 (1026)
Q Consensus 610 ~~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-g~----~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~-d 683 (1026)
..|.+.|.|++|++|.... ..+..++|||+|++ ++ .+.+|+...+|++|-+.++..|.-.-+...|.+.|| |
T Consensus 267 ~~g~l~vEii~ar~l~~k~--~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKP--GSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGD 344 (405)
T ss_pred ccCceeEEEEecccccccC--CcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEecc
Confidence 3588999999999999852 22347999999987 22 348899999999999999999988888889999999 4
Q ss_pred CCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCc-eEeeeEeeee
Q 001696 684 NCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHR-IYTHSYPLLV 728 (1026)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~-~~~~~~~L~~ 728 (1026)
+.++ ..+.|+|.++|-|.+|.-.. ....||+|..
T Consensus 345 ygRm-----------d~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 345 YGRM-----------DHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred cccc-----------chHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 4443 37899999999999998776 7799999984
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.00089 Score=72.32 Aligned_cols=122 Identities=19% Similarity=0.269 Sum_probs=89.7
Q ss_pred eEEEEeecCCCccCCCCCCCCCEEEEEe-----CCceeeeccCCCCCCcccceeEEEeccCCCC--------CccceEEE
Q 001696 3 LVVEVVDAYDLMPKDGEGSASPFAEVDF-----LNQLSKTKTIPKNLNPVWNQKLLFDFDQTKS--------HNHLRIEV 69 (1026)
Q Consensus 3 L~V~v~~a~~L~~~~~~g~~dpyv~v~~-----~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~--------~~~~~L~~ 69 (1026)
|.+.|+++.+++...+....|-||++.+ ..++.+|.+++.|.+|.|+|.|-..+..... +++..+.|
T Consensus 369 lel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kf 448 (523)
T KOG3837|consen 369 LELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKF 448 (523)
T ss_pred hHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeE
Confidence 5566777777765544445688999988 2367788899999999999999999876211 13356999
Q ss_pred EEeeCCCCCCCCCccceeEEecCccccccCCceeEEeeccccccccccccccceeEEec
Q 001696 70 SIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYIS 128 (1026)
Q Consensus 70 ~V~d~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 128 (1026)
+||+ ...+..+|.++|.+.+-|+.|...-+ ....|+|.+. +..+-|.|.+++.+-
T Consensus 449 eifh-kggf~rSdkl~gt~nikle~Len~ce-i~e~~~l~DG--RK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 449 EIFH-KGGFNRSDKLTGTGNIKLEILENMCE-ICEYLPLKDG--RKAVGGKLEVKVRIR 503 (523)
T ss_pred EEee-ccccccccceeceeeeeehhhhcccc-hhhceecccc--ccccCCeeEEEEEEe
Confidence 9999 55556789999999999887765433 4445777653 445678888888764
|
|
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.11 Score=50.41 Aligned_cols=127 Identities=18% Similarity=0.162 Sum_probs=88.2
Q ss_pred eeEEEEEEEEeecCCCCCC--CCCCC--cEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCC-------------CC
Q 001696 284 MSYLYVRVVKAKDLPPSSI--TGSCD--PYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQ-------------SS 346 (1026)
Q Consensus 284 ~~~L~V~v~~a~~L~~~d~--~g~~d--pyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~-------------~~ 346 (1026)
...|.|+|..++-....-. .+..+ -.+.+.+++++++|+.+..+.+|.|+|.|.|.+.... ..
T Consensus 8 ~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~ 87 (156)
T PF15627_consen 8 RRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISD 87 (156)
T ss_pred ceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCC
Confidence 3579999999886543211 12233 3455667899999999999999999999999874321 36
Q ss_pred eEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCC-cccceEEEEEEeccc
Q 001696 347 MLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEG-KVRGQTMLAIWMGTQ 413 (1026)
Q Consensus 347 ~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~~~~~~~ 413 (1026)
.|.+.|.--+..+...++|+..++-..+....... ...-..|.....+. ...|-|.+++.+.+.
T Consensus 88 pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~---~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 88 PIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGS---TSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred ceEEEEEEecCCCceEeeeeceehHHHHhccCCCc---cceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 78888888777777789999999888877654321 01344555554432 367888888866543
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.034 Score=65.89 Aligned_cols=96 Identities=22% Similarity=0.291 Sum_probs=75.7
Q ss_pred EEEEEEEEEeEecCCCCCCCCCCcEEEEEEC-------CeEEEeeeecCCCCCCcccce-eEEE-eeCCCcCeEEEEEEE
Q 001696 448 WYLRVNVIEAQDIVPNDRNRLPEGFVKVQVG-------NQVLKTKICPTPTTNPLWNED-LVFV-AAEPFEEQLFLTVED 518 (1026)
Q Consensus 448 ~~l~V~I~~a~~L~~~d~~~~~dpyV~v~lg-------~~~~kT~~~~~~t~nP~wne~-f~f~-v~~~~~~~L~i~V~d 518 (1026)
+.+.|+|++|.-|..++ ...||+|.+- .+.++|+++..++.||+|+|. |.|. |.-|.-..|+|.||+
T Consensus 703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred eeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 36999999999997655 4589999982 256789998789999999976 7775 555566789999999
Q ss_pred ccCCCCCceeEEEEEeCcccccccCCCCccceeEEcccCC
Q 001696 519 RVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFG 558 (1026)
Q Consensus 519 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~ 558 (1026)
. .+.+||+-.+++..|.. .-+.+.|....
T Consensus 779 E----ggK~ig~RIlpvd~l~~-------GYrhv~LRse~ 807 (1189)
T KOG1265|consen 779 E----GGKFIGQRILPVDGLNA-------GYRHVCLRSES 807 (1189)
T ss_pred c----CCceeeeeccchhcccC-------cceeEEecCCC
Confidence 6 46799999999998864 34567777653
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.055 Score=64.28 Aligned_cols=109 Identities=17% Similarity=0.250 Sum_probs=79.3
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeEeeeecC-CCCCeEeEE-EEEE-ecCCCCCeEEEEEE
Q 001696 284 MSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-------YKGRTKHFEK-RMNPEWNQV-FAFS-KERIQSSMLEVFLK 353 (1026)
Q Consensus 284 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-------~~~kT~~~~~-t~nP~wne~-f~f~-v~~~~~~~L~v~V~ 353 (1026)
.+.+.|+|+++.-|..++ ...||.|.+-+ ..++|++..+ +.||+|+|. |.|. |--+.-..|+|-||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 457899999999998765 45899999865 3578888765 779999976 7776 33333478999999
Q ss_pred eCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEE
Q 001696 354 DKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAI 408 (1026)
Q Consensus 354 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~ 408 (1026)
+.+ ..+||+-.+++..+..+- +.+.|....+..-....|.+.+
T Consensus 778 eEg----gK~ig~RIlpvd~l~~GY--------rhv~LRse~Nqpl~lp~Lfv~i 820 (1189)
T KOG1265|consen 778 EEG----GKFIGQRILPVDGLNAGY--------RHVCLRSESNQPLTLPALFVYI 820 (1189)
T ss_pred ccC----CceeeeeccchhcccCcc--------eeEEecCCCCCccccceeEEEE
Confidence 974 579999999999988763 5667766554322334455444
|
|
| >PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.06 Score=52.15 Aligned_cols=49 Identities=18% Similarity=0.344 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHhhccccccCchhHHHHHHHHHHHHHh
Q 001696 818 RRSKANFFRVMSLLSGMISVSRWFTDICNWRNPVTAVLVHILFLILIWY 866 (1026)
Q Consensus 818 ~~~~~n~~Rl~~~~~~~~~~~~~i~~~~~W~~p~~s~~~~~~~~~~~~~ 866 (1026)
.+++.=..|++.++..+-..+..++.+++|++|..|.++.+++++++.-
T Consensus 62 drlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avv 110 (156)
T PF08372_consen 62 DRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVV 110 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHH
Confidence 3455556788888889999999999999999999999988777665543
|
It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO). |
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.2 Score=48.54 Aligned_cols=96 Identities=13% Similarity=0.187 Sum_probs=72.3
Q ss_pred CceEEEEEEEEEeEecCCCCCC--CCCCcEEE--EEECCeEEEeeeecCCCCCCcccceeEEEeeCCC------------
Q 001696 445 PKLWYLRVNVIEAQDIVPNDRN--RLPEGFVK--VQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPF------------ 508 (1026)
Q Consensus 445 p~~~~l~V~I~~a~~L~~~d~~--~~~dpyV~--v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~~------------ 508 (1026)
|...+|.++|..++-....-.. +..+.-+. +.+++|.++|+.+ ..+.+|.|+|.|-|.+....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~V-p~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls 84 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPV-PCACEPDFNEEFLFELPRDSFGAGSTATTLLS 84 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCc-ccccCCCCCCcEEEEecccccccccchhHhhc
Confidence 4455799999999875422111 33444444 4459999999999 69999999999999985542
Q ss_pred -cCeEEEEEEEccCCCCCceeEEEEEeCcccccc
Q 001696 509 -EEQLFLTVEDRVHASKDEVLGKISLPLHIFEKR 541 (1026)
Q Consensus 509 -~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~ 541 (1026)
.+.|.+.|.-.|..+...++|+-.+++..+...
T Consensus 85 ~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s 118 (156)
T PF15627_consen 85 ISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCS 118 (156)
T ss_pred CCCceEEEEEEecCCCceEeeeeceehHHHHhcc
Confidence 346888888887777779999999999998765
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.078 Score=52.09 Aligned_cols=107 Identities=19% Similarity=0.226 Sum_probs=70.5
Q ss_pred CceEEEEeecCCCccCCCCCCCCCEEEEEe--CCc----eeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeC
Q 001696 1 MKLVVEVVDAYDLMPKDGEGSASPFAEVDF--LNQ----LSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHH 74 (1026)
Q Consensus 1 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~--~~~----~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~ 74 (1026)
+.++|+|++++++.-. ..+|-||.+.+ ++. ...|+-+. ..++.|||...|++.-.+--.+..|.|+||+.
T Consensus 8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 3589999999999653 34688998877 442 22444444 36799999999987644434557899999994
Q ss_pred CCCCC--CCCccceeEEecCccccccCCceeEEeeccccccccccccccceeEEec
Q 001696 75 ERRPI--PGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYIS 128 (1026)
Q Consensus 75 d~~~~--~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 128 (1026)
..... .....+|.+.++|-+-. . .| .+|...+.++..
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~~---~------~L--------r~G~~~L~lW~~ 122 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDYT---D------TL--------VSGKMALNLWPV 122 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECCC---C------hh--------hCCCEEEEEEcC
Confidence 43211 12246899998855421 1 11 158888888754
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.088 Score=52.77 Aligned_cols=91 Identities=18% Similarity=0.264 Sum_probs=60.9
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEe--CCc----eeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCC
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDF--LNQ----LSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHE 75 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~--~~~----~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d 75 (1026)
.+.|+|+++.+|.. .....+-||.+.+ ++. ...|+.+.-..++.|||.+.|++.-.+--.+..|.|.||+..
T Consensus 9 ~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 58899999999975 2234667777766 442 345655555577999999999875444334578999999943
Q ss_pred CCCC--------------CCCccceeEEecCcc
Q 001696 76 RRPI--------------PGRHFLGRVRIPCSN 94 (1026)
Q Consensus 76 ~~~~--------------~~d~~lG~~~i~l~~ 94 (1026)
.... ..+..||.+.++|-+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEc
Confidence 3210 123577777777544
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.061 Score=56.37 Aligned_cols=114 Identities=11% Similarity=0.138 Sum_probs=76.0
Q ss_pred ceEEEEeecCCCcc--CCCCCCCCCEEEEEeCC-ceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCC
Q 001696 2 KLVVEVVDAYDLMP--KDGEGSASPFAEVDFLN-QLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRP 78 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~--~~~~g~~dpyv~v~~~~-~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~ 78 (1026)
.|.+++..+|+|+- +..+-+-+-||++.++. ++-+|.+......=.|.|+|..++.+.+ .+.+-||.|+...
T Consensus 52 iL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~~-----vl~~lvySW~pq~ 126 (442)
T KOG1452|consen 52 ILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNIE-----VLHYLVYSWPPQR 126 (442)
T ss_pred eEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccce-----eeeEEEeecCchh
Confidence 47799999999963 33455788999999976 5667777766667789999999988754 8999999998865
Q ss_pred CCCCccceeEEecCccccccCCceeEEeeccccccccccccccceeEEecC
Q 001696 79 IPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYISP 129 (1026)
Q Consensus 79 ~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 129 (1026)
..+-..+| .+.+..+.........-..|++ +|.+-+++-+.+
T Consensus 127 RHKLC~~g--~l~~~~v~rqspd~~~Al~leP-------rgq~~~r~~~~D 168 (442)
T KOG1452|consen 127 RHKLCHLG--LLEAFVVDRQSPDRVVALYLEP-------RGQPPLRLPLAD 168 (442)
T ss_pred hccccccc--hhhhhhhhhcCCcceeeeeccc-------CCCCceecccCC
Confidence 22333455 3333333322221112245554 577877776544
|
|
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.16 Score=50.89 Aligned_cols=86 Identities=17% Similarity=0.275 Sum_probs=60.5
Q ss_pred EEEEEEEEeEecCCCCCCCCCCcEEEEEE--CCeEE----EeeeecCCCCCCcccceeEEEee---CCCcCeEEEEEEEc
Q 001696 449 YLRVNVIEAQDIVPNDRNRLPEGFVKVQV--GNQVL----KTKICPTPTTNPLWNEDLVFVAA---EPFEEQLFLTVEDR 519 (1026)
Q Consensus 449 ~l~V~I~~a~~L~~~d~~~~~dpyV~v~l--g~~~~----kT~~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~d~ 519 (1026)
.++|+|+.+.+|.. .....+-||++.+ |++.. .|+.+ .-...+.|||.+.|++. -|.+..|.|+||+.
T Consensus 9 ~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~-~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 9 KFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEV-SGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEcccc-CCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 48999999999986 2234577888755 76643 55555 23567999999999752 34677999999997
Q ss_pred cCCC----------------CCceeEEEEEeCcc
Q 001696 520 VHAS----------------KDEVLGKISLPLHI 537 (1026)
Q Consensus 520 d~~~----------------~d~~lG~~~i~l~~ 537 (1026)
.... ....||.+.++|-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEc
Confidence 5321 24677887777765
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.22 Score=48.91 Aligned_cols=83 Identities=25% Similarity=0.346 Sum_probs=60.6
Q ss_pred EEEEEEEeEecCCCCCCCCCCcEEEEEE--CCeEE----EeeeecCCCCCCcccceeEEEee---CCCcCeEEEEEEEcc
Q 001696 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV--GNQVL----KTKICPTPTTNPLWNEDLVFVAA---EPFEEQLFLTVEDRV 520 (1026)
Q Consensus 450 l~V~I~~a~~L~~~d~~~~~dpyV~v~l--g~~~~----kT~~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~d~d 520 (1026)
++|+|+++.++...+ ..|-||++.+ |++.. .|+.+ ...++.|||-.+|++. -|....|.|+||+..
T Consensus 10 ~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v--~~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 10 LRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRV--PCSNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred eEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEeccc--CCCCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 899999999987632 3578888866 66543 45544 2468999999999763 236779999999975
Q ss_pred CCC----CCceeEEEEEeCcc
Q 001696 521 HAS----KDEVLGKISLPLHI 537 (1026)
Q Consensus 521 ~~~----~d~~lG~~~i~l~~ 537 (1026)
... ....+|.+.++|-+
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred cccCCCCceEEEEEEEEEEEC
Confidence 421 23568999988876
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.16 Score=50.30 Aligned_cols=92 Identities=21% Similarity=0.280 Sum_probs=61.0
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEe--CCc----eeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCC
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDF--LNQ----LSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHE 75 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~--~~~----~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d 75 (1026)
.++|+|.+..++...+ ....+-||.+.+ ++. ...|.....+.++.|||...|++.-.+--.+..|.|.||+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 5788999988886511 234666777766 432 334444444478999999999965443334578999999943
Q ss_pred CCCCCCCccceeEEecCcc
Q 001696 76 RRPIPGRHFLGRVRIPCSN 94 (1026)
Q Consensus 76 ~~~~~~d~~lG~~~i~l~~ 94 (1026)
......+..||.+.++|-+
T Consensus 88 ~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred cCCCCcceEEEEEeEEeEc
Confidence 3211145799999999655
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.81 Score=44.39 Aligned_cols=114 Identities=19% Similarity=0.240 Sum_probs=77.4
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEE---EEeeee-cCCCCceeecEEEEEeeC---C------CCEEEE
Q 001696 613 ILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKW---VRTRTI-LDTFNPKWNEQYTWEVYD---P------CTVITL 679 (1026)
Q Consensus 613 ~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~---~~T~~~-~~t~~P~wne~~~~~v~~---~------~~~l~i 679 (1026)
.+.|.|++..+++.. ....||+.+.|... ..|... ..+..-.|||.|.+++.. . ...+.|
T Consensus 8 ~~~l~i~~l~~~p~~-------~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 8 QFDLTIHELENLPSS-------NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred EEEEEEEEeECcCCC-------CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 578899999988752 33456666666553 455544 356678999999998852 2 125889
Q ss_pred EEEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccC--CceEeeeEeeeecCCCCCccCcEEEEEEEEee
Q 001696 680 GVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEA--HRIYTHSYPLLVLHPHGVKKMGELQLAIRFTI 748 (1026)
Q Consensus 680 ~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 748 (1026)
.|+....-+ +...||++.|+|++..+ .......++|... .+....++|.+.+..
T Consensus 81 ~v~~~~~~~-----------~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 81 SVFEVDGSG-----------KKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLSISISLSE 136 (143)
T ss_pred EEEEecCCC-----------ccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEEE
Confidence 998864211 23689999999999876 3566778888632 133467888877654
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER) | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.015 Score=58.42 Aligned_cols=65 Identities=14% Similarity=0.071 Sum_probs=17.0
Q ss_pred HHHhhhHhHhhhccccCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhcCCCCCCCCCCch
Q 001696 947 DIATQGERFQSLLSWRDPRATALFILFSLCAAMVLYTTPFKVVALLAGLYYLRHPRFRSKLPSVP 1011 (1026)
Q Consensus 947 ~~a~~le~~~~l~~w~~p~~t~~~~~~l~~~~i~l~~iP~r~i~l~~g~~~~r~P~~~~~~p~~~ 1011 (1026)
.++..+..++.++.|+||..|..++++|++++.+.-+++...++.+..+..+-=|.+..+....+
T Consensus 92 ~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~~I 156 (169)
T PF02453_consen 92 WINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQEEI 156 (169)
T ss_dssp CCCHHHHHHHCCCHCT-TTGGG-------------------------------------------
T ss_pred HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44455778888999999999999999999888888888887766665555555565554444433
|
Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A. |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.45 Score=46.93 Aligned_cols=93 Identities=19% Similarity=0.305 Sum_probs=65.2
Q ss_pred CCCcEEEEEE--CCe----eeEeeeecCCCCCeEeEEEEEEec--C-CCCCeEEEEEEeCCCCCCCceeEEEEEEccccC
Q 001696 305 SCDPYVEVKM--GNY----KGRTKHFEKRMNPEWNQVFAFSKE--R-IQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVP 375 (1026)
Q Consensus 305 ~~dpyv~v~~--~~~----~~kT~~~~~t~nP~wne~f~f~v~--~-~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~ 375 (1026)
.++-||.+.+ +++ ...|..+.-+..+.|||...|++. + +.+..|.|+||+....+....+|.++++|-+-.
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~~ 108 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNKD 108 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECCC
Confidence 4677777755 333 235555555667899999999863 3 347899999999876656779999999987642
Q ss_pred CCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecccCchhh
Q 001696 376 TRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGTQADEAF 418 (1026)
Q Consensus 376 ~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~d~~~ 418 (1026)
+ .| ..|...+.+|....+|+..
T Consensus 109 -g------------~L--------r~G~~~l~lw~~~~~d~~~ 130 (159)
T cd08397 109 -G------------TL--------RRGRQKLRVWPDVEADGSI 130 (159)
T ss_pred -C------------cE--------ecCCEEEEEEeCCCCCCcc
Confidence 1 11 2488888898877766543
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.13 Score=53.99 Aligned_cols=75 Identities=20% Similarity=0.223 Sum_probs=57.1
Q ss_pred CceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-EEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCC
Q 001696 610 PVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ-KWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCH 686 (1026)
Q Consensus 610 ~~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~-~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~ 686 (1026)
..|.|.++++.++||..... ..+-..+-||+++++. ...||.+......-.|.|.|+.++.... ++.+-||.|+.
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~-~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~~-vl~~lvySW~p 124 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQ-QKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNIE-VLHYLVYSWPP 124 (442)
T ss_pred ccceEEEEEecccccccChh-ccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccce-eeeEEEeecCc
Confidence 34899999999999986532 2233679999999974 4677777777777789999999887543 47788888875
|
|
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=93.51 E-value=1.4 Score=42.73 Aligned_cols=105 Identities=20% Similarity=0.246 Sum_probs=70.3
Q ss_pred eEEEEEEEEEeEecCCCCCCCCCCcEEEEEECCeE---EEeeeecCCCCCCcccceeEEEeeC--------CCcCeEEEE
Q 001696 447 LWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQV---LKTKICPTPTTNPLWNEDLVFVAAE--------PFEEQLFLT 515 (1026)
Q Consensus 447 ~~~l~V~I~~a~~L~~~d~~~~~dpyV~v~lg~~~---~kT~~~~~~t~nP~wne~f~f~v~~--------~~~~~L~i~ 515 (1026)
...+.|+|++..+++.. ....||+..-|+.. ..|....-....-.|||.|.+.+.- .....+.|.
T Consensus 6 kf~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 35789999999998872 23455666666653 5555553456678999999997632 134478899
Q ss_pred EEEccCCCCCceeEEEEEeCcccccccCCCCccceeEEcccC
Q 001696 516 VEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKF 557 (1026)
Q Consensus 516 V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 557 (1026)
|+.....++...+|.+.|+|+++.... ......-++|...
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~--~~~~~~~~~l~~~ 121 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANED--EEPITVRLLLKKC 121 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcC--CCcEEEEEeCccC
Confidence 988743233369999999999987642 1234455667665
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.47 Score=46.89 Aligned_cols=87 Identities=29% Similarity=0.374 Sum_probs=60.7
Q ss_pred EEEEEEEeEecCCCCCCCCCCcEEEEEE--CCeE----EEeeeecCCCCCCcccceeEEEee---CCCcCeEEEEEEEcc
Q 001696 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV--GNQV----LKTKICPTPTTNPLWNEDLVFVAA---EPFEEQLFLTVEDRV 520 (1026)
Q Consensus 450 l~V~I~~a~~L~~~d~~~~~dpyV~v~l--g~~~----~kT~~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~d~d 520 (1026)
++|.|....++...+ ....+-||++.+ |++. ..|+.. ....++.|||...|++. -|.+..|.|+||+.+
T Consensus 10 ~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~-~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 10 LRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKV-PFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred eEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCC-cCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 788888888876511 223567777765 6653 234333 23368999999999752 346779999999986
Q ss_pred CCC--CCceeEEEEEeCccc
Q 001696 521 HAS--KDEVLGKISLPLHIF 538 (1026)
Q Consensus 521 ~~~--~d~~lG~~~i~l~~l 538 (1026)
... .+..||.+.++|-+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 543 468999999998764
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.85 Score=45.67 Aligned_cols=97 Identities=20% Similarity=0.214 Sum_probs=60.3
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEE--ECCEE---EEeeeecCCCCceeecEEEEEee--C-C-CCEEEEEEEe
Q 001696 613 ILEVGILGAQGLLPMKMKDGRGSTDAYCIAK--YGQKW---VRTRTILDTFNPKWNEQYTWEVY--D-P-CTVITLGVFD 683 (1026)
Q Consensus 613 ~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~--~g~~~---~~T~~~~~t~~P~wne~~~~~v~--~-~-~~~l~i~v~d 683 (1026)
.++|.|+++.. +.. +......-||++. .|+.. .+|..+.-+.++.|||-++|+|. + | ...|.|+||+
T Consensus 11 ~friki~~~~~-~~~---~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~ 86 (178)
T cd08399 11 KFRVKILGIDI-PVL---PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYC 86 (178)
T ss_pred CEEEEEEeecc-cCc---CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEE
Confidence 57788888863 332 1122234556553 36554 36666666778999999999886 3 3 6689999999
Q ss_pred CCCCC-----CCCccCCCCCCCCCeeEEEEEEccc
Q 001696 684 NCHLG-----GGEKQNGSSAVRDSRIGKVRIRLST 713 (1026)
Q Consensus 684 ~~~~~-----~~~~~~~~~~~~~~~lG~~~i~l~~ 713 (1026)
..... .|.+..+...+.+..||.+.+.|-+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 87 GKAPALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred EecCcccccccccccccccccccceEEEEEEEEEc
Confidence 74311 0111111222357788999998877
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.56 Score=47.05 Aligned_cols=114 Identities=18% Similarity=0.220 Sum_probs=73.3
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEe--CCc----eeeeccCC----CCCCcccceeEEEeccCCCCCccceEEEEE
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDF--LNQ----LSKTKTIP----KNLNPVWNQKLLFDFDQTKSHNHLRIEVSI 71 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~--~~~----~~~T~~~~----~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V 71 (1026)
.+.|+|.++.+++........|-||.+.+ +++ ...|+... -...+.|||...|++.-.+--.+..|.|.|
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 37899999999987665556888999877 442 23443221 123578999999997544333457899999
Q ss_pred eeCCCCCC-------CCCccceeEEecCccccccCCceeEEeeccccccccccccccceeEEecCCCC
Q 001696 72 YHHERRPI-------PGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYISPQSE 132 (1026)
Q Consensus 72 ~d~d~~~~-------~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~~ 132 (1026)
|+...... ..+..||.+.++|-+-.. .| .+|...+.++....+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~---------~L--------~~G~~~L~lW~~~~~~ 139 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRG---------VL--------RQGSLLLGLWPPSKDN 139 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcchh---------hh--------ccCCEEEEeccCCccC
Confidence 99433210 134688888888554211 11 2588888887554433
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.81 Score=39.57 Aligned_cols=84 Identities=13% Similarity=0.235 Sum_probs=57.8
Q ss_pred CCCCEEEEEeCC-ceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCCCCCccceeEEecCccccccC
Q 001696 21 SASPFAEVDFLN-QLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKG 99 (1026)
Q Consensus 21 ~~dpyv~v~~~~-~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~d~~lG~~~i~l~~l~~~~ 99 (1026)
..+-.+++.+++ ...+|.-.. ..+..|++.|.|.+... .+|+|.||=.|- ..+.|-.-+-|++..
T Consensus 8 ~~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdRs-----RELEI~VywrD~-----RslCav~~lrLEd~~--- 73 (98)
T cd08687 8 CSEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELERS-----RELEIAVYWRDW-----RSLCAVKFLKLEDER--- 73 (98)
T ss_pred ccceEEEEEEcCeEEeeccccc-cccccccceeEEEeecc-----cEEEEEEEEecc-----hhhhhheeeEhhhhc---
Confidence 367789999987 566776653 36788999999998865 489999987332 346677777777732
Q ss_pred CceeEEeeccccccccccccccceeEEe
Q 001696 100 EEVYQRFPLEKKWFLSSVKGEVGLKIYI 127 (1026)
Q Consensus 100 ~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 127 (1026)
.....+|++ .|.+..++.|
T Consensus 74 --~~~~~~lep-------qg~l~~ev~f 92 (98)
T cd08687 74 --HEVQLDMEP-------QLCLVAELTF 92 (98)
T ss_pred --ccceecccc-------ccEEEEEEEe
Confidence 223356665 5677776665
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.52 Score=46.49 Aligned_cols=70 Identities=27% Similarity=0.250 Sum_probs=51.8
Q ss_pred CCCcEEEEEE--CCeEE----EeeeecCCCCCCcccceeEEEee---CCCcCeEEEEEEEccCCCCCceeEEEEEeCccc
Q 001696 468 LPEGFVKVQV--GNQVL----KTKICPTPTTNPLWNEDLVFVAA---EPFEEQLFLTVEDRVHASKDEVLGKISLPLHIF 538 (1026)
Q Consensus 468 ~~dpyV~v~l--g~~~~----kT~~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l 538 (1026)
.+|-||++.+ |++.. .|+.+ .-+..+.|||-..|++. -|.+..|.|+||+.+..+....+|.+.++|-+-
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~-~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYK-PFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEcccc-CCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 3677888766 55533 55555 34567889999999863 246789999999987655678999999998763
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.76 Score=46.11 Aligned_cols=90 Identities=28% Similarity=0.382 Sum_probs=63.5
Q ss_pred EEEEEEEEeEecCCCCCCCCCCcEEEEEE--CCeEE----Eeeeec---CCCCCCcccceeEEEee---CCCcCeEEEEE
Q 001696 449 YLRVNVIEAQDIVPNDRNRLPEGFVKVQV--GNQVL----KTKICP---TPTTNPLWNEDLVFVAA---EPFEEQLFLTV 516 (1026)
Q Consensus 449 ~l~V~I~~a~~L~~~d~~~~~dpyV~v~l--g~~~~----kT~~~~---~~t~nP~wne~f~f~v~---~~~~~~L~i~V 516 (1026)
.++|+|..+.+++........|-||++.+ |++.. .|+... .-...+.|||...|++. -|.+..|.|+|
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 48999999999987665445788888866 66543 444321 11235779999999762 24677999999
Q ss_pred EEccCCC---------CCceeEEEEEeCccc
Q 001696 517 EDRVHAS---------KDEVLGKISLPLHIF 538 (1026)
Q Consensus 517 ~d~d~~~---------~d~~lG~~~i~l~~l 538 (1026)
|+..... .+..||.+.++|-+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9986543 457889988888763
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=91.76 E-value=1.1 Score=44.89 Aligned_cols=69 Identities=29% Similarity=0.265 Sum_probs=46.6
Q ss_pred EEEEEEEeEecCCCCCCCCCCcEEEEEE--CCeEE---EeeeecCCCCCCcccceeEEEee---CCCcCeEEEEEEEcc
Q 001696 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV--GNQVL---KTKICPTPTTNPLWNEDLVFVAA---EPFEEQLFLTVEDRV 520 (1026)
Q Consensus 450 l~V~I~~a~~L~~~d~~~~~dpyV~v~l--g~~~~---kT~~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~d~d 520 (1026)
++|+|+++.. +..+......-||++.+ |++.. +|... .-+.++.|||-+.|++. -|....|.|+||+..
T Consensus 12 friki~~~~~-~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~-~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 12 FRVKILGIDI-PVLPRNTDLTVFVEANIQHGQQVLCQRRTSPK-PFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred EEEEEEeecc-cCcCCCCceEEEEEEEEEECCeecccceeecc-CCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 7888888863 33333333456777654 66533 56655 35667999999888763 236779999999974
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=88.97 E-value=4.1 Score=35.44 Aligned_cols=63 Identities=22% Similarity=0.322 Sum_probs=48.3
Q ss_pred CCcEEEEEECCe-eeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCceeEEEEEEcccc
Q 001696 306 CDPYVEVKMGNY-KGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEV 374 (1026)
Q Consensus 306 ~dpyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l 374 (1026)
.+-.+.+.+++. ..+|.-.. -.+..|++.|.+.++. +..|+|.||-+|. ..+.|...+.|.+.
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR--sRELEI~VywrD~---RslCav~~lrLEd~ 72 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER--SRELEIAVYWRDW---RSLCAVKFLKLEDE 72 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEeec--ccEEEEEEEEecc---hhhhhheeeEhhhh
Confidence 577889999885 56776544 3588999999999876 4789999987764 35777778888874
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain | Back alignment and domain information |
|---|
Probab=88.40 E-value=0.91 Score=37.87 Aligned_cols=44 Identities=11% Similarity=0.133 Sum_probs=33.6
Q ss_pred EeCcccccccCCCCccceeEEcccCCCCchhhhhhccccccceEEEEEEecCC
Q 001696 533 LPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFSSRVHLRVCLEGG 585 (1026)
Q Consensus 533 i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~g~l~l~~~~~~~ 585 (1026)
+++..++.+ +++.+.++|..|.++.+. .....|+|++.+++.+.
T Consensus 1 ~DlgtVY~q-P~H~~~~KW~~L~dP~D~--------~~G~kGYlKv~i~Vlg~ 44 (72)
T PF08151_consen 1 LDLGTVYNQ-PDHQFYRKWALLTDPDDT--------SAGVKGYLKVDISVLGP 44 (72)
T ss_pred CceeeeecC-CCCeeEeceEEecCCCCC--------ccCCceEEEEEEEEEcC
Confidence 355666665 678899999999998753 33468999999998764
|
They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains []. |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=88.31 E-value=4.1 Score=39.47 Aligned_cols=66 Identities=20% Similarity=0.287 Sum_probs=45.1
Q ss_pred cEEEEE--ECCEE-----EEeeeecCC-CCceeecEEEEEee--C-C-CCEEEEEEEeCCCCCCCCccCCCCCCCC----
Q 001696 638 AYCIAK--YGQKW-----VRTRTILDT-FNPKWNEQYTWEVY--D-P-CTVITLGVFDNCHLGGGEKQNGSSAVRD---- 701 (1026)
Q Consensus 638 pyv~v~--~g~~~-----~~T~~~~~t-~~P~wne~~~~~v~--~-~-~~~l~i~v~d~~~~~~~~~~~~~~~~~~---- 701 (1026)
-||.+. .|++. ..|..+.-+ .++.|||.++|++. + | .+.|.|+||..+... ..
T Consensus 4 ~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~-----------~~~~~~ 72 (142)
T PF00792_consen 4 LYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK-----------KSKKKK 72 (142)
T ss_dssp EEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST-----------TT--EE
T ss_pred EEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC-----------ccccce
Confidence 345543 36654 356666666 89999999999875 3 4 668999999876532 22
Q ss_pred CeeEEEEEEcccc
Q 001696 702 SRIGKVRIRLSTL 714 (1026)
Q Consensus 702 ~~lG~~~i~l~~l 714 (1026)
..||.+.++|-+-
T Consensus 73 ~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 73 VPLGWVNLPLFDY 85 (142)
T ss_dssp EEEEEEEEESB-T
T ss_pred eEEEEEEEEeECC
Confidence 6899999999886
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=87.85 E-value=2.5 Score=38.15 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=48.0
Q ss_pred eEEEEeecCCCccCCCCCCCCCEEEEEe--CCc----eeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeC
Q 001696 3 LVVEVVDAYDLMPKDGEGSASPFAEVDF--LNQ----LSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHH 74 (1026)
Q Consensus 3 L~V~v~~a~~L~~~~~~g~~dpyv~v~~--~~~----~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~ 74 (1026)
+.+.+..+.+.........++-||.+.+ ++. ...|+.+.-...+.|||...|++.-.+--....|.|.||+.
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~ 90 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEV 90 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEe
Confidence 4566777777654433323578899877 442 33555555556689999999987654444457899999993
|
Outlier of C2 family. |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=87.25 E-value=6.3 Score=38.13 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=50.6
Q ss_pred EeeeecCC-CCCeEeEEEEEEe--cC-CCCCeEEEEEEeCCCCCCC----ceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 001696 320 RTKHFEKR-MNPEWNQVFAFSK--ER-IQSSMLEVFLKDKEMVGRD----DYLGRVAFDLNEVPTRVPPDSPLAPQWYRL 391 (1026)
Q Consensus 320 kT~~~~~t-~nP~wne~f~f~v--~~-~~~~~L~v~V~d~~~~~~d----~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 391 (1026)
.|+....+ .++.|||.+.|++ .+ +.+..|.|+||+.+..... ..||.+.++|-+.... |
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~~-------------L 89 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRGQ-------------L 89 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTSB-------------B
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCCc-------------c
Confidence 56655555 7999999999985 33 3478999999997765444 6999999998876321 1
Q ss_pred ecCCCCCcccceEEEEEEecccCc
Q 001696 392 EDRRGEGKVRGQTMLAIWMGTQAD 415 (1026)
Q Consensus 392 ~~~~~~~~~~G~i~l~~~~~~~~d 415 (1026)
..|...+.+|-....+
T Consensus 90 --------~~G~~~L~lW~~~~~~ 105 (142)
T PF00792_consen 90 --------RQGPQKLSLWPDEEPD 105 (142)
T ss_dssp --------EEEEEEEE-EET-TTS
T ss_pred --------cCCCEEEEEEcCCCCc
Confidence 2488888888765544
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=86.94 E-value=1.6 Score=51.70 Aligned_cols=65 Identities=32% Similarity=0.409 Sum_probs=49.2
Q ss_pred HHHHHHhhhHhHhhhccccCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhcCCCCCCC-CCCch
Q 001696 944 VVGDIATQGERFQSLLSWRDPRATALFILFSLCAAMVLYTTPFKVVALLAGLYYLRHPRFRSK-LPSVP 1011 (1026)
Q Consensus 944 ~l~~~a~~le~~~~l~~w~~p~~t~~~~~~l~~~~i~l~~iP~r~i~l~~g~~~~r~P~~~~~-~p~~~ 1011 (1026)
++=.++.+...|.-|.+|++|+.|..|+++.++++++-+++|.-+++|+.- +.+|..|.- +|+.+
T Consensus 104 v~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~aW~~dll~p~~~~~L~~l---i~~P~~r~~lFPpap 169 (642)
T PF11696_consen 104 VVVGLAAFIKHIARLRSWREPRRTAAFCAVYFIAWLLDLLVPAFFAFLIAL---ILSPPARSILFPPAP 169 (642)
T ss_pred hHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCcccccccCCCCC
Confidence 444556666778888999999999999999999999999999966555543 346666654 46544
|
|
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=86.24 E-value=4 Score=36.85 Aligned_cols=70 Identities=24% Similarity=0.305 Sum_probs=47.1
Q ss_pred EEEEEEEeEecCCCCCCCCCCcEEEEEE--CCeEE----EeeeecCCCCCCcccceeEEEee---CCCcCeEEEEEEEcc
Q 001696 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV--GNQVL----KTKICPTPTTNPLWNEDLVFVAA---EPFEEQLFLTVEDRV 520 (1026)
Q Consensus 450 l~V~I~~a~~L~~~d~~~~~dpyV~v~l--g~~~~----kT~~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~d~d 520 (1026)
+.+.+..+.+.........++-||++.+ |++.. .|+.+ .-...+.|||-..|++. -|.+..|.|+||+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~-~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYK-PFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEeccc-CCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5566777777655433333578888866 66543 45544 33456899999998753 346779999999974
|
Outlier of C2 family. |
| >PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide | Back alignment and domain information |
|---|
Probab=85.14 E-value=1.9 Score=49.10 Aligned_cols=70 Identities=24% Similarity=0.388 Sum_probs=44.5
Q ss_pred HHHHhhHHHHHHHHHhhh---HhHhhhccccCchhHHHHHHHHHHHHHHHhh----hhhHHHHHHHh--hhhhcCCCCC
Q 001696 935 RSVAGRIQTVVGDIATQG---ERFQSLLSWRDPRATALFILFSLCAAMVLYT----TPFKVVALLAG--LYYLRHPRFR 1004 (1026)
Q Consensus 935 ~~~~~~vQ~~l~~~a~~l---e~~~~l~~w~~p~~t~~~~~~l~~~~i~l~~----iP~r~i~l~~g--~~~~r~P~~~ 1004 (1026)
..+..++-..|+.+-.++ +++.++++|++|..|..+++++..+++..++ +|+-+++++.. -|..+||.=.
T Consensus 9 ~~n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~ll~~il~~~yl~~~p~~~ 87 (359)
T PF06398_consen 9 SSNFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLLLFGILLPSYLYRHPSPT 87 (359)
T ss_pred HhChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeecCCCc
Confidence 444556667778888888 9999999999999887766655555554444 44444333322 2345665443
|
Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p []. |
| >PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain | Back alignment and domain information |
|---|
Probab=83.80 E-value=18 Score=36.17 Aligned_cols=82 Identities=20% Similarity=0.225 Sum_probs=59.1
Q ss_pred CcCcEEEEEECCEE-EEeeeecC--CCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEc
Q 001696 635 STDAYCIAKYGQKW-VRTRTILD--TFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRL 711 (1026)
Q Consensus 635 ~~dpyv~v~~g~~~-~~T~~~~~--t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l 711 (1026)
+..-|++|.++++. .+|+...= ...-.|||.|.+.|..--..|.|+||..... .+..|+.+.|++
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~------------~~~~la~v~vpv 103 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGL------------SDRLLAEVFVPV 103 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCc------------cceEEEEEEeeC
Confidence 44679999998765 55655532 3334679999999988777799999997642 689999999998
Q ss_pred ccccCC--ce--EeeeEeeee
Q 001696 712 STLEAH--RI--YTHSYPLLV 728 (1026)
Q Consensus 712 ~~l~~~--~~--~~~~~~L~~ 728 (1026)
-..... .. ...||.+.+
T Consensus 104 P~~~~~~~~~~~~~~~~eFsS 124 (168)
T PF15625_consen 104 PGSTVHTSTDNVPLEEYEFSS 124 (168)
T ss_pred CCCcccccccCCceEeEEEcC
Confidence 886443 11 356666664
|
|
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=83.20 E-value=9.9 Score=38.42 Aligned_cols=39 Identities=15% Similarity=0.298 Sum_probs=31.9
Q ss_pred eeEeeeecCCCCCeEeEEEEEEec--CCCCCeEEEEEEeCC
Q 001696 318 KGRTKHFEKRMNPEWNQVFAFSKE--RIQSSMLEVFLKDKE 356 (1026)
Q Consensus 318 ~~kT~~~~~t~nP~wne~f~f~v~--~~~~~~L~v~V~d~~ 356 (1026)
.++|.+...+.+|.|+|++.+.+. ......|.|++++..
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S 94 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCS 94 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEee
Confidence 468999999999999999998863 335678999888754
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
| >PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain | Back alignment and domain information |
|---|
Probab=82.62 E-value=17 Score=36.23 Aligned_cols=88 Identities=14% Similarity=0.169 Sum_probs=60.3
Q ss_pred CCcEEEEEECCe-EEEeeeec-CCCCCCcccceeEEEeeCCCcCeEEEEEEEccCCCCCceeEEEEEeCcccccccCCCC
Q 001696 469 PEGFVKVQVGNQ-VLKTKICP-TPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRP 546 (1026)
Q Consensus 469 ~dpyV~v~lg~~-~~kT~~~~-~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~ 546 (1026)
..-|+++.++++ +.+|+... .....-.|||.|.+.+.. ..+.|.|+||.... ..+..|+++.+++-..........
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~-~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~~~~~~ 114 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITR-WPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVHTSTDN 114 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEec-CCCEEEEEEEEccC-ccceEEEEEEeeCCCCcccccccC
Confidence 356899999764 56666653 133345679999999877 56799999999866 789999999999876543211111
Q ss_pred ccceeEEcccCC
Q 001696 547 VHSRWFNLEKFG 558 (1026)
Q Consensus 547 ~~~~w~~L~~~~ 558 (1026)
....|+.+....
T Consensus 115 ~~~~~~eFsS~~ 126 (168)
T PF15625_consen 115 VPLEEYEFSSDQ 126 (168)
T ss_pred CceEeEEEcCCc
Confidence 145666665543
|
|
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=80.87 E-value=16 Score=36.94 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=31.3
Q ss_pred EEEeeeecCCCCCCcccceeEEEeeCC--CcCeEEEEEEEcc
Q 001696 481 VLKTKICPTPTTNPLWNEDLVFVAAEP--FEEQLFLTVEDRV 520 (1026)
Q Consensus 481 ~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~d 520 (1026)
.++|.+. ..+.+|.|+|++.+.+... ....|.|++++..
T Consensus 54 e~~S~V~-yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S 94 (189)
T cd08695 54 EYRSFVL-YHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCS 94 (189)
T ss_pred eEEEEEE-EcCCCCCCceeEEEecChhhCCCeeEEEEEEEee
Confidence 5788888 5899999999999987544 5568999888763
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
| >KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.82 E-value=1.9 Score=52.57 Aligned_cols=106 Identities=17% Similarity=0.218 Sum_probs=82.8
Q ss_pred CCcCcEEEEEECCE-EEEeeeecCC-CCceeecEEEEEeeCCCCEEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEc
Q 001696 634 GSTDAYCIAKYGQK-WVRTRTILDT-FNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRL 711 (1026)
Q Consensus 634 ~~~dpyv~v~~g~~-~~~T~~~~~t-~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l 711 (1026)
...++|+.+.+... ..+|..+.+. .+|.|.+.|..........+++.|-+.+..| -...+|.+.++.
T Consensus 136 ~~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G-----------~s~~w~~v~~s~ 204 (887)
T KOG1329|consen 136 KTLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPG-----------WSKRWGRVKISF 204 (887)
T ss_pred hhccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCcccc-----------ceeEEEEeccch
Confidence 34789999999755 4788888877 7999999998888888888999998877643 478999999999
Q ss_pred ccccCCceEeeeEeeeecCCCCCccCcEEEEEEEEeecc
Q 001696 712 STLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTIFS 750 (1026)
Q Consensus 712 ~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~ 750 (1026)
..+..+.....|+++...+..-..+.-.+.+.+.|.+..
T Consensus 205 ~~~~~~~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~~ 243 (887)
T KOG1329|consen 205 LQYCSGHRIGGWFPILDNDGKPHQKGSNESLRLGFTPME 243 (887)
T ss_pred hhhhccccccceeeeeccCCccccCCcccceEEeeEeec
Confidence 999998888999999865543333333466667776543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1026 | ||||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 5e-10 | ||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 1e-06 | ||
| 1rh8_A | 142 | Three-Dimensional Structure Of The Calcium-Free Pic | 4e-09 | ||
| 2d8k_A | 141 | Solution Structure Of The First C2 Domain Of Synapt | 2e-08 | ||
| 1a25_A | 149 | C2 Domain From Protein Kinase C (Beta) Length = 149 | 5e-08 | ||
| 3pfq_A | 674 | Crystal Structure And Allosteric Activation Of Prot | 7e-08 | ||
| 2nsq_A | 155 | Crystal Structure Of The C2 Domain Of The Human E3 | 9e-08 | ||
| 1dqv_A | 296 | Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt | 1e-07 | ||
| 3hn8_A | 296 | Crystal Structure Of Synaptotagmin Length = 296 | 1e-07 | ||
| 1dsy_A | 139 | C2 Domain From Protein Kinase C (Alpha) Complexed W | 1e-07 | ||
| 3gpe_A | 137 | Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain | 1e-07 | ||
| 3kwt_A | 148 | Munc13-1 C2b-Domain, Calcium-Free Length = 148 | 2e-07 | ||
| 3kwt_A | 148 | Munc13-1 C2b-Domain, Calcium-Free Length = 148 | 2e-04 | ||
| 3b7y_A | 153 | Crystal Structure Of The C2 Domain Of The E3 Ubiqui | 4e-07 | ||
| 4dnl_A | 140 | Crystal Structure Of A C2 Domain Of A Protein Kinas | 4e-07 | ||
| 3jzy_A | 510 | Crystal Structure Of Human Intersectin 2 C2 Domain | 4e-07 | ||
| 3jzy_A | 510 | Crystal Structure Of Human Intersectin 2 C2 Domain | 4e-04 | ||
| 3m7f_B | 176 | Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX | 5e-06 | ||
| 2chd_A | 142 | Crystal Structure Of The C2a Domain Of Rabphilin-3a | 6e-06 | ||
| 2k3h_A | 140 | Structural Determinants For Ca2+ And Pip2 Binding B | 6e-06 | ||
| 2bwq_A | 129 | Crystal Structure Of The Rim2 C2a-Domain At 1.4 Ang | 6e-06 | ||
| 3n5a_A | 138 | Synaptotagmin-7, C2b-Domain, Calcium Bound Length = | 6e-06 | ||
| 1v27_A | 141 | Solution Structure Of The First C2 Domain Of Rim2 L | 8e-06 | ||
| 2uzp_A | 144 | Crystal Structure Of The C2 Domain Of Human Protein | 1e-05 | ||
| 2r83_A | 284 | Crystal Structure Analysis Of Human Synaptotagmin 1 | 4e-05 | ||
| 1rlw_A | 126 | Calcium-Phospholipid Binding Domain From Cytosolic | 7e-05 | ||
| 1bci_A | 138 | C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minim | 7e-05 | ||
| 1cjy_A | 749 | Human Cytosolic Phospholipase A2 Length = 749 | 1e-04 | ||
| 2jqz_A | 131 | Solution Structure Of The C2 Domain Of Human Smurf2 | 2e-04 | ||
| 3pyc_A | 132 | Crystal Structure Of Human Smurf1 C2 Domain Length | 2e-04 | ||
| 1w15_A | 153 | Rat Synaptotagmin 4 C2b Domain In The Presence Of C | 4e-04 |
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142 | Back alignment and structure |
|
| >pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141 | Back alignment and structure |
|
| >pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149 | Back alignment and structure |
|
| >pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674 | Back alignment and structure |
|
| >pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155 | Back alignment and structure |
|
| >pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296 | Back alignment and structure |
|
| >pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296 | Back alignment and structure |
|
| >pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139 | Back alignment and structure |
|
| >pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137 | Back alignment and structure |
|
| >pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148 | Back alignment and structure |
|
| >pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148 | Back alignment and structure |
|
| >pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153 | Back alignment and structure |
|
| >pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140 | Back alignment and structure |
|
| >pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510 | Back alignment and structure |
|
| >pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510 | Back alignment and structure |
|
| >pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176 | Back alignment and structure |
|
| >pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142 | Back alignment and structure |
|
| >pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140 | Back alignment and structure |
|
| >pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom Resolution Length = 129 | Back alignment and structure |
|
| >pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound Length = 138 | Back alignment and structure |
|
| >pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2 Length = 141 | Back alignment and structure |
|
| >pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144 | Back alignment and structure |
|
| >pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284 | Back alignment and structure |
|
| >pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic Phospholipase A2 Length = 126 | Back alignment and structure |
|
| >pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized Average Structure Length = 138 | Back alignment and structure |
|
| >pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2 Length = 749 | Back alignment and structure |
|
| >pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2 Length = 131 | Back alignment and structure |
|
| >pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain Length = 132 | Back alignment and structure |
|
| >pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium Length = 153 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 4e-48
Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 8/134 (5%)
Query: 275 TSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQ 334
+ + V+ + L V+V+KA DL + +G DP+ +++GN + +T K +NPEWN+
Sbjct: 3 SGSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNK 62
Query: 335 VFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDR 394
VF F + I LEV + D++ D+LG+VA L + P Y L+++
Sbjct: 63 VFTFPIKDIHDV-LEVTVFDEDGDKPPDFLGKVAIPLLSIR-------DGQPNCYVLKNK 114
Query: 395 RGEGKVRGQTMLAI 408
E +G L +
Sbjct: 115 DLEQAFKGVIYLEM 128
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 97.7 bits (244), Expect = 4e-24
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 11/127 (8%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKS 61
L V+V+ A DL+ D G + PF ++ N +T T+ KNLNP WN+ F F
Sbjct: 14 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKV--FTFPIKDI 71
Query: 62 HNHLRIEVSIYHHERRPIPGRH-FLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGE 120
H+ L + V + + FLG+V IP ++ R G+ + L+ K + KG
Sbjct: 72 HDVLEVTV--FDEDGD---KPPDFLGKVAIPLLSI-RDGQP--NCYVLKNKDLEQAFKGV 123
Query: 121 VGLKIYI 127
+ L++ +
Sbjct: 124 IYLEMDL 130
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 1e-20
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 610 PVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWE 669
VGIL+V +L A LL D G +D +C+ + G ++T T+ NP+WN+ +T+
Sbjct: 11 DVGILQVKVLKAADLLAA---DFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFP 67
Query: 670 VYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVL 729
+ D V+ + VFD E + +GKV I L ++ + + Y L
Sbjct: 68 IKDIHDVLEVTVFD-------EDGDK----PPDFLGKVAIPLLSIRDGQ--PNCYVLKNK 114
Query: 730 HPHGVKKMGELQLAIRF 746
K G + L +
Sbjct: 115 DLEQAFK-GVIYLEMDL 130
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 7e-18
Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 21/134 (15%)
Query: 449 YLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPF 508
L+V V++A D++ D + + F +++GN L+T NP WN+ F +
Sbjct: 14 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYK-NLNPEWNKVFTFPIKDI- 71
Query: 509 EEQLFLTV--EDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADR 566
+ L +TV ED + LGK+++PL R + L+ ++
Sbjct: 72 HDVLEVTVFDEDGD--KPPDFLGKVAIPLL------SIRDGQPNCYVLK---------NK 114
Query: 567 RKELKFSSRVHLRV 580
E F ++L +
Sbjct: 115 DLEQAFKGVIYLEM 128
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 1e-39
Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 9/152 (5%)
Query: 265 GRGWMSGERFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNY------K 318
G + E F D E + VRV+ L I G+ DPYV V + +
Sbjct: 1 GMATCAVEVFGLLED-EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTS 59
Query: 319 GRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRV 378
+TK +K +NP+WN+ F Q L + D+ + RDD+LG+V L +PT
Sbjct: 60 VQTKTIKKSLNPKWNEEILFRVHPQQHR-LLFEVFDENRLTRDDFLGQVDVPLYPLPTEN 118
Query: 379 PPDS-PLAPQWYRLEDRRGEGKVRGQTMLAIW 409
P P + + L R + +V+G L +
Sbjct: 119 PRLERPYTFKDFVLHPRSHKSRVKGYLRLKMT 150
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 2e-18
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 19/136 (13%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLS------KTKTIPKNLNPVWNQKLLFD 55
+ V V+ L KD G++ P+ V + ++ +TKTI K+LNP WN+++LF
Sbjct: 21 IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80
Query: 56 FDQTKSHNHLRIEVSIYHHERRPIPGRH-FLGRVRIPCSNLVRKGEE-----VYQRFPLE 109
+ R+ ++ R R FLG+V +P L + ++ F L
Sbjct: 81 VHPQQH----RLLFEVFDENRL---TRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLH 133
Query: 110 KKWFLSSVKGEVGLKI 125
+ S VKG + LK+
Sbjct: 134 PRSHKSRVKGYLRLKM 149
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 5e-15
Identities = 32/153 (20%), Positives = 63/153 (41%), Gaps = 23/153 (15%)
Query: 439 SKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVGN------QVLKTKICPTPTT 492
+ +RV VI + D + +V+V + + ++TK +
Sbjct: 11 GLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKK-SL 69
Query: 493 NPLWNEDLVFVAAEPFEEQLFLTV--EDRVHASKDEVLGKISLPLH--IFEKRLDHRPVH 548
NP WNE+++F P + +L V E+R+ ++D+ LG++ +PL+ E RP
Sbjct: 70 NPKWNEEILFR-VHPQQHRLLFEVFDENRL--TRDDFLGQVDVPLYPLPTENPRLERPYT 126
Query: 549 SRWFNLEKFGFGAIEADRRKELKFSSRVHLRVC 581
+ F L R + + + L++
Sbjct: 127 FKDFVLH---------PRSHKSRVKGYLRLKMT 150
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 6e-15
Identities = 37/148 (25%), Positives = 60/148 (40%), Gaps = 25/148 (16%)
Query: 610 PVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKW------VRTRTILDTFNPKWN 663
I+ V ++ GL D G++D Y V+T+TI + NPKWN
Sbjct: 18 NSRIVRVRVIAGIGLAKK---DILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWN 74
Query: 664 EQYTWEVYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEA---HRIY 720
E+ + V+ + VFD E + RD +G+V + L L
Sbjct: 75 EEILFRVHPQQHRLLFEVFD-------ENRLT----RDDFLGQVDVPLYPLPTENPRLER 123
Query: 721 THSYPLLVLHP--HGVKKMGELQLAIRF 746
+++ VLHP H + G L+L + +
Sbjct: 124 PYTFKDFVLHPRSHKSRVKGYLRLKMTY 151
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 2e-36
Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSS 346
+ + VV A+ L TGS DPYV V++G K RTK +NP W + F F
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78
Query: 347 M-LEVFLKD---------KEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRG 396
+ + V +D + DD+LG+ ++ + + WY L+ R
Sbjct: 79 IKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEM-------DVWYNLDKRTD 131
Query: 397 EGKVRGQTMLAI 408
+ V G L I
Sbjct: 132 KSAVSGAIRLHI 143
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 1e-29
Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 12/136 (8%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKS 61
K+ + VV A L KD GS+ P+ V +TKTI NLNPVW + F+ S
Sbjct: 18 KISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHN--S 75
Query: 62 HNHLRIEV-------SIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFL 114
+ +++ V +R FLG+ I L E+ + L+K+
Sbjct: 76 SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL---SGEMDVWYNLDKRTDK 132
Query: 115 SSVKGEVGLKIYISPQ 130
S+V G + L I + +
Sbjct: 133 SAVSGAIRLHISVEIK 148
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 94.5 bits (235), Expect = 8e-23
Identities = 34/149 (22%), Positives = 55/149 (36%), Gaps = 6/149 (4%)
Query: 600 RPTAKQLWKPPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFN 659
+ + + + ++ AQGL KD GS+D Y + G+ RT+TI N
Sbjct: 5 KQSVLDGTSKWSAKISITVVCAQGLQA---KDKTGSSDPYVTVQVGKTKKRTKTIYGNLN 61
Query: 660 PKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRI 719
P W E + +E ++ I + V D + D +G+ I + TL
Sbjct: 62 PVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE-- 119
Query: 720 YTHSYPLLVLHPHGVKKMGELQLAIRFTI 748
Y L G ++L I I
Sbjct: 120 MDVWYNLDKRTDKSAVS-GAIRLHISVEI 147
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 86.4 bits (214), Expect = 7e-20
Identities = 34/162 (20%), Positives = 61/162 (37%), Gaps = 30/162 (18%)
Query: 435 FNIRSKVYVSPKLW--YLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTT 492
F ++ V W + + V+ AQ + D+ + +V VQVG +TK
Sbjct: 2 FAVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYG-NL 60
Query: 493 NPLWNEDLVFVAAEPFEEQLFLTVED-----------RVHASKDEVLGKISLPLHIFEKR 541
NP+W E+ F +++ + V D R D+ LG+ + +
Sbjct: 61 NPVWEENFHFECHNS-SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE 119
Query: 542 LDHRPVHSRWFNLEKFGFGAIEADRRKELKFSSRVHLRVCLE 583
+D W+NL+K R + S + L + +E
Sbjct: 120 MD------VWYNLDK---------RTDKSAVSGAIRLHISVE 146
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 2e-35
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 7/125 (5%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQ-- 344
L V V A ++P + G DP V V + K +TK + +NP WN++ F I
Sbjct: 9 LRVIVESASNIPKT-KFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLD 67
Query: 345 -SSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQ 403
SS L + +KD E +G++ +G L ++ P + L + +G+
Sbjct: 68 FSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPY--KLISLLNEKGQ-DTGAT 124
Query: 404 TMLAI 408
L I
Sbjct: 125 IDLVI 129
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 87.9 bits (218), Expect = 1e-20
Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 8/128 (6%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKS 61
L V V A ++ PK G P V F ++ KTK + LNPVWN+ L FD
Sbjct: 8 MLRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPL 66
Query: 62 HNHLRIEVSIYHHERRPIPGRH-FLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGE 120
+ + + E G++ +G + +L P + L+ +
Sbjct: 67 DFSSSLGIIVKDFET---IGQNKLIGTATVALKDLTGDQSRS---LPYKLISLLNEKGQD 120
Query: 121 VGLKIYIS 128
G I +
Sbjct: 121 TGATIDLV 128
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 7e-17
Identities = 27/141 (19%), Positives = 53/141 (37%), Gaps = 20/141 (14%)
Query: 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVY 671
G+L V + A + K G D + + +T+ + + NP WNE +++
Sbjct: 7 GMLRVIVESASNIPKTKF----GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLR 62
Query: 672 ----DPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727
D + + + V D +G ++ IG + L L + + Y L+
Sbjct: 63 GIPLDFSSSLGIIVKDFETIG-----------QNKLIGTATVALKDLTGDQSRSLPYKLI 111
Query: 728 -VLHPHGVKKMGELQLAIRFT 747
+L+ G + L I +
Sbjct: 112 SLLNEKGQDTGATIDLVIGYD 132
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 3e-16
Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 16/135 (11%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEP-- 507
LRV V A +I P + P+ V V ++ KTK NP+WNE L F
Sbjct: 9 LRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKKVDN-ELNPVWNEILEFDLRGIPL 66
Query: 508 -FEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADR 566
F L + V+D +++++G ++ L K L S + L +
Sbjct: 67 DFSSSLGIIVKDFETIGQNKLIGTATVAL----KDLTGDQSRSLPYKLIS------LLNE 116
Query: 567 RKELKFSSRVHLRVC 581
+ + + + L +
Sbjct: 117 KGQ-DTGATIDLVIG 130
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 131 bits (330), Expect = 6e-34
Identities = 62/300 (20%), Positives = 111/300 (37%), Gaps = 58/300 (19%)
Query: 274 FTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKG---RTKHFEKRMNP 330
++ YD Q + L V +++A +LP + G+ DPYV+V + K TK K +NP
Sbjct: 10 YSLDYD--FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNP 67
Query: 331 EWNQVFAF--SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQW 388
+N+ F F + L + + D + + D +G +N V
Sbjct: 68 VFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNT----VDFGHVTEEWR 123
Query: 389 YRLEDRRGEGKVRGQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVSPKLW 448
+ E + G ++ A +
Sbjct: 124 DLQSAEKEEQEKLGDICFSLRYVPTAGK-------------------------------- 151
Query: 449 YLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTP----TTNPLWNEDLVF-V 503
L V ++EA+++ D L + +VK+ + + K T T NP +NE F V
Sbjct: 152 -LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 210
Query: 504 AAEPFEE-QLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDH--------RPVHSRWFNL 554
E ++ Q+ +TV D K++ +GK+ + + L H R ++W L
Sbjct: 211 PFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTL 270
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 2e-18
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 16/124 (12%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAF--S 339
L V +++AK+L + G DPYV++ + K +T + +NP +N+ F+F
Sbjct: 152 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 211
Query: 340 KERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRV--------PPDSPLAPQWYRL 391
E+IQ + V + D + +G++D +G+V N + P P+A QW+ L
Sbjct: 212 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QWHTL 270
Query: 392 EDRR 395
+
Sbjct: 271 QVEE 274
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 85.6 bits (212), Expect = 2e-18
Identities = 51/231 (22%), Positives = 91/231 (39%), Gaps = 51/231 (22%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV---GNQVLKTKICPTPTTNPLWNEDLVF-VAA 505
L V +I+A ++ D + +VKV + + +TK+ T NP++NE F V
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPY 79
Query: 506 EPFEEQ-LFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEA 564
+ L + V D SK +++G+ +P+ +D V W +L+
Sbjct: 80 SELAGKTLVMAVYDFDRFSKHDIIGEFKVPM----NTVDFGHVTEEWRDLQS-------- 127
Query: 565 DRRKELKFSSRVHLRVCLEGGYHVLDESTMYISDQRPTAKQLWKPPVGILEVGILGAQGL 624
++ + + L + P G L V IL A+ L
Sbjct: 128 --AEKEEQEKLGDICFSLR-----------------------YVPTAGKLTVVILEAKNL 162
Query: 625 LPMKMKDGRGSTDAYC---IAKYGQKWV--RTRTILDTFNPKWNEQYTWEV 670
M D G +D Y + + G++ +T +T NP +NE +++EV
Sbjct: 163 KKM---DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 210
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 4e-14
Identities = 26/135 (19%), Positives = 58/135 (42%), Gaps = 8/135 (5%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLN---QLSKTKTIPKNLNPVWNQKLLFDFDQ 58
+L+V ++ A +L D G++ P+ +V L + +TK K LNPV+N++ F
Sbjct: 20 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 79
Query: 59 TKSHNHLRIEVSIYHHERRPIPGRH-FLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSV 117
++ + +++Y +R +H +G ++P + + R +
Sbjct: 80 SELAGK-TLVMAVYDFDRF---SKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEK 135
Query: 118 KGEVGLKIYISPQSE 132
G++ + P +
Sbjct: 136 LGDICFSLRYVPTAG 150
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 1e-12
Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLS-----KTKTIPKNLNPVWNQKLLFDF 56
KL V +++A +L D G + P+ ++ + KT LNP +N+ F+
Sbjct: 151 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 210
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCS 93
+ +++ V++ +++ I +G+V + +
Sbjct: 211 PFEQIQ-KVQVVVTVLDYDK--IGKNDAIGKVFVGYN 244
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 5e-09
Identities = 29/144 (20%), Positives = 58/144 (40%), Gaps = 20/144 (13%)
Query: 609 PPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAK---YGQKWVRTRTILDTFNPKWNEQ 665
L VGI+ A L + D G++D Y +K T+ T NP +NEQ
Sbjct: 16 FQNNQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQ 72
Query: 666 YTWEVYD---PCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTH 722
+T++V + + V+D + IG+ ++ ++T++ +
Sbjct: 73 FTFKVPYSELAGKTLVMAVYDFDRFS-----------KHDIIGEFKVPMNTVDFGHVTEE 121
Query: 723 SYPLLVLHPHGVKKMGELQLAIRF 746
L +K+G++ ++R+
Sbjct: 122 WRDLQSAEKEEQEKLGDICFSLRY 145
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 7e-34
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 11/121 (9%)
Query: 284 MSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERI 343
MS L V V KAK + YV +K+ N K T + P W Q F F R+
Sbjct: 4 MSLLCVGVKKAKFDGA---QEKFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINRL 59
Query: 344 QSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDR--RGEGKVR 401
+ V + +K ++ D +G V L + + +W L+ + + ++
Sbjct: 60 DLGLT-VEVWNKGLIW-DTMVGTVWIPLRTIRQS---NEEGPGEWLTLDSQAIMADSEIC 114
Query: 402 G 402
G
Sbjct: 115 G 115
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 5e-09
Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 9/108 (8%)
Query: 449 YLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPF 508
L V V +A+ ++ +V ++V N T + P W +D +F
Sbjct: 6 LLCVGVKKAKFDGAQEK---FNTYVTLKVQNVKSTTIA--VRGSQPSWEQDFMFEINRL- 59
Query: 509 EEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEK 556
+ L + V ++ D ++G + +PL R + W L+
Sbjct: 60 DLGLTVEVWNKGL-IWDTMVGTVWIPLR--TIRQSNEEGPGEWLTLDS 104
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 8e-09
Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 12/110 (10%)
Query: 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSH 62
L V V A ++ + + + N S T + + P W Q F F+ +
Sbjct: 7 LCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAV-RGSQPSWEQD--FMFEINRLD 60
Query: 63 NHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQR-FPLEKK 111
L +EV + + +G V IP + + EE L+ +
Sbjct: 61 LGLTVEV-----WNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQ 105
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 2e-33
Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 13/122 (10%)
Query: 286 YLYVRVVKAKDL---PPSSITGSCDPYVEVKMG---NYKGRTKHFEKRMNPEWNQVFAFS 339
V V++A + + + DPYVE+ + + + RT+HF +NP WN+ F F
Sbjct: 4 KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI 63
Query: 340 KERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGK 399
+ Q ++LE+ L D D+ LG F ++ + + + E
Sbjct: 64 LDPNQENVLEITLMDANY-VMDETLGTATFTVSSMKVGEKKE-----VPFIFNQ-VTEMV 116
Query: 400 VR 401
+
Sbjct: 117 LE 118
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 3e-16
Identities = 22/139 (15%), Positives = 44/139 (31%), Gaps = 24/139 (17%)
Query: 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG---QKWVRTRTILDTFNPKWNEQYTWEV 670
V +L A + D + D Y RTR + NP WNE + + +
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 671 YDPCT-VITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVL 729
V+ + + D + V D +G +S+++ +
Sbjct: 65 DPNQENVLEITLMDANY------------VMDETLGTATFTVSSMKVGEKKEVPFIF--- 109
Query: 730 HPHGVKKMGELQLAIRFTI 748
++ E+ L + +
Sbjct: 110 -----NQVTEMVLEMSLEV 123
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 4e-15
Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 20/131 (15%)
Query: 2 KLVVEVVDAYDLM---PKDGEGSASPFAEV---DFLNQLSKTKTIPKNLNPVWNQKLLFD 55
K V V+ A + D + P+ E+ + +T+ ++NPVWN+ F
Sbjct: 4 KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI 63
Query: 56 FDQTKSHNHLRIEVSIYHHERRPIPGRH-FLGRVRIPCSNLVRKGEEVYQRFPLEKKWFL 114
D N L I + LG S++ + GE+ F +
Sbjct: 64 LDP-NQENVLEITL--MDANY----VMDETLGTATFTVSSM-KVGEKKEVPFIFNQVT-- 113
Query: 115 SSVKGEVGLKI 125
+ + + +
Sbjct: 114 ---EMVLEMSL 121
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 6e-15
Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 16/123 (13%)
Query: 449 YLRVNVIEAQDIV---PNDRNRLPEGFVKVQVG---NQVLKTKICPTPTTNPLWNEDLVF 502
V V+ A + D P+ +V++ + + +T+ NP+WNE F
Sbjct: 4 KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNN-DINPVWNETFEF 62
Query: 503 VAAEPFEEQLFLTV--EDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFG 560
+ E L +T+ + V DE LG + + + F +
Sbjct: 63 ILDPNQENVLEITLMDANYV---MDETLGTATFTV----SSMKVGEKKEVPFIFNQVTEM 115
Query: 561 AIE 563
+E
Sbjct: 116 VLE 118
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 128 bits (322), Expect = 9e-33
Identities = 70/301 (23%), Positives = 107/301 (35%), Gaps = 58/301 (19%)
Query: 274 FTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKM---GNYKGRTKHFEKRMNP 330
F Y L VR+++A DLP G DPYV++ + K +TK K +NP
Sbjct: 11 FALRYL--YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNP 68
Query: 331 EWNQVFAF--SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQW 388
+N+ F F + L + D + R D +G+V D PPD PL W
Sbjct: 69 IFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---W 125
Query: 389 YRLEDRRGEGKVRGQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVSPKLW 448
+ + E G+ ++ P
Sbjct: 126 RDILEGGSEKADLGELNFSL---------------------------------CYLPTAG 152
Query: 449 YLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTP----TTNPLWNEDLVF-V 503
L V +I+A ++ D + +VK + ++ + K T T NP +NE LVF V
Sbjct: 153 LLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDV 212
Query: 504 AAEPFEE-QLFLTVEDRVHASKDEVLGKISLPLHIFEKR-LDH--------RPVHSRWFN 553
A E E L + V D +EV+G + + +H R W
Sbjct: 213 APESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQ 272
Query: 554 L 554
L
Sbjct: 273 L 273
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 86.8 bits (215), Expect = 1e-18
Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 17/125 (13%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAF--S 339
L V ++KA +L +TG DPYV+ + + K +T + +NP +N+ F +
Sbjct: 154 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 213
Query: 340 KERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVP---------PDSPLAPQWYR 390
E +++ L + + D + +G ++ +G P P+ W++
Sbjct: 214 PESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVE-HWHQ 272
Query: 391 LEDRR 395
L + +
Sbjct: 273 LVEEK 277
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 5e-18
Identities = 55/281 (19%), Positives = 103/281 (36%), Gaps = 64/281 (22%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV---GNQVLKTKICPTPTTNPLWNEDLVF-VAA 505
L V +++A D+ D N + +VK+ + + +TK+ T NP++NE F V
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRK-TLNPIFNETFQFSVPL 80
Query: 506 EPFEEQ-LFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEA 564
++ L +V D S+ +++G++ L + + P W ++ +
Sbjct: 81 AELAQRKLHFSVYDFDRFSRHDLIGQVVLD--NLLELAEQPPDRPLWRDILEG------- 131
Query: 565 DRRKELKFSSRVHLRVCLEGGYHVLDESTMYISDQRPTAKQLWKPPVGILEVGILGAQGL 624
E ++ +C + P G+L V I+ A L
Sbjct: 132 --GSEKADLGELNFSLC-------------------------YLPTAGLLTVTIIKASNL 164
Query: 625 LPMKMKDGRGSTDAYCIAKY---GQKWV--RTRTILDTFNPKWNEQYTWEVYD---PCTV 676
M D G +D Y A G++ +T +T NP +NE ++V
Sbjct: 165 KAM---DLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVG 221
Query: 677 ITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAH 717
+++ V D +G + IG R+ + H
Sbjct: 222 LSIAVVDYDCIG-----------HNEVIGVCRVGPEAADPH 251
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 6e-13
Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 8/105 (7%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLS-----KTKTIPKNLNPVWNQKLLFDF 56
L V ++ A +L D G + P+ + +++ KT LNP +N+ L+FD
Sbjct: 153 LLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDV 212
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEE 101
++ + +++ ++ I +G R+ G E
Sbjct: 213 APESVE-NVGLSIAVVDYDC--IGHNEVIGVCRVGPEAADPHGRE 254
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 4e-12
Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLS---KTKTIPKNLNPVWNQKLLFDFDQ 58
+LVV ++ A DL KD G + P+ ++ L +TK K LNP++N+ F
Sbjct: 21 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPL 80
Query: 59 TKSHNHLRIEVSIYHHERRPIPGRH-FLGRVRIPC-SNLVRKGEEVYQRFPLEKKWFLSS 116
+ ++ S+Y +R RH +G+V + L + + + + +
Sbjct: 81 AELAQR-KLHFSVYDFDRF---SRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKA 136
Query: 117 VKGEVGLKIYISPQSE 132
GE+ + P +
Sbjct: 137 DLGELNFSLCYLPTAG 152
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 7e-07
Identities = 30/146 (20%), Positives = 46/146 (31%), Gaps = 23/146 (15%)
Query: 609 PPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAK---YGQKWVRTRTILDTFNPKWNEQ 665
L V IL A L D G +D Y +K +T+ T NP +NE
Sbjct: 17 YGSDQLVVRILQALDLPAK---DSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNET 73
Query: 666 YTWEVYD---PCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRI--RLSTLEAHRIY 720
+ + V + V+D R IG+V + L E
Sbjct: 74 FQFSVPLAELAQRKLHFSVYDFDRFS-----------RHDLIGQVVLDNLLELAEQPPDR 122
Query: 721 THSYPLLVLHPHGVKKMGELQLAIRF 746
+L +GEL ++ +
Sbjct: 123 PLWRDILEGGSEKA-DLGELNFSLCY 147
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 6e-31
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 8/134 (5%)
Query: 282 EQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNY------KGRTKHFEKRMNPEWNQV 335
+ + V+V+ L I G+ DPYV V + + +TK +K +NP+WN+
Sbjct: 5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEE 64
Query: 336 FAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPD-SPLAPQWYRLEDR 394
F + + + D+ + RDD+LG+V L +PT P P + + L R
Sbjct: 65 ILFRVLPQRHR-ILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPR 123
Query: 395 RGEGKVRGQTMLAI 408
+ +V+G L +
Sbjct: 124 SHKSRVKGYLRLKM 137
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 89.6 bits (222), Expect = 1e-20
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 17/156 (10%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLS------KTKTIPKNLNPVWNQKLLFD 55
+ V+V+ L KD G++ P+ V + +S +TKTI K+LNP WN++
Sbjct: 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEE--IL 66
Query: 56 FDQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEE-----VYQRFPLEK 110
F + + EV + R + FLG+V +P L + ++ F L
Sbjct: 67 FRVLPQRHRILFEV--FDENR--LTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHP 122
Query: 111 KWFLSSVKGEVGLKIYISPQSETTQPPTSSLPKPKS 146
+ S VKG + LK+ P++ + + +
Sbjct: 123 RSHKSRVKGYLRLKMTYLPKNGSEDENADQAEELEP 158
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 78.8 bits (194), Expect = 6e-17
Identities = 38/153 (24%), Positives = 60/153 (39%), Gaps = 25/153 (16%)
Query: 605 QLWKPPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKW------VRTRTILDTF 658
+L ++ V ++ GL D G++D Y V+T+TI +
Sbjct: 1 ELHNDDTRVVRVKVIAGIGLAKK---DILGASDPYVRVTLYDPMSGILTSVQTKTIKKSL 57
Query: 659 NPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTL---E 715
NPKWNE+ + V I VFD L RD +G+V + L L
Sbjct: 58 NPKWNEEILFRVLPQRHRILFEVFDENRLT-----------RDDFLGQVDVPLYPLPTEN 106
Query: 716 AHRIYTHSYPLLVLHP--HGVKKMGELQLAIRF 746
+++ VLHP H + G L+L + +
Sbjct: 107 PRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTY 139
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 8e-13
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Query: 449 YLRVNVIEAQDIVPNDRNRLPEGFVKVQVGN------QVLKTKICPTPTTNPLWNEDLVF 502
+RV VI + D + +V+V + + ++TK + NP WNE+++F
Sbjct: 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKK-SLNPKWNEEILF 67
Query: 503 VAAEPFEEQLFLTVEDRVHASKDEVLGKISLPLH--IFEKRLDHRPVHSRWFNLEK 556
P ++ V D ++D+ LG++ +PL+ E RP + F L
Sbjct: 68 RV-LPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHP 122
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 2e-29
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 9/113 (7%)
Query: 282 EQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKE 341
+S L V V KAK + YV +K+ N + T + P W Q F F
Sbjct: 11 GILSLLCVGVKKAKFDGA---QEKFNTYVTLKVQNVESTTIAV-RGSQPSWEQDFMFEIN 66
Query: 342 RIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDR 394
R+ + V + +K ++ D +G V L + + +W L+ +
Sbjct: 67 RLDLGLT-VEVWNKGLI-WDTMVGTVWIPLRTIRQS---NEEGPGEWLTLDSQ 114
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 5e-07
Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 9/108 (8%)
Query: 449 YLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPF 508
L V V +A+ ++ +V ++V N T + P W +D +F
Sbjct: 15 LLCVGVKKAKFDGAQEKF---NTYVTLKVQNVESTTIA--VRGSQPSWEQDFMFEINRL- 68
Query: 509 EEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEK 556
+ L + V ++ D ++G + +PL + + P W L+
Sbjct: 69 DLGLTVEVWNKGLI-WDTMVGTVWIPLRTIRQSNEEGP--GEWLTLDS 113
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 3e-06
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 12/110 (10%)
Query: 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSH 62
L V V A ++ + + + N S T + + P W Q F F+ +
Sbjct: 16 LCVGVKKAKFDGAQE---KFNTYVTLKVQNVESTTIAV-RGSQPSWEQ--DFMFEINRLD 69
Query: 63 NHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVY-QRFPLEKK 111
L +EV + + +G V IP + + EE + L+ +
Sbjct: 70 LGLTVEV-----WNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQ 114
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 3e-25
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 11/124 (8%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKR-MNPEWNQVFAFSKERIQS 345
L V +V AK L + + DPYV++ ++ E PEWN+ F F+ +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 346 SM-LEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQT 404
+ ++F DK++ DD +G L V + + P Y + + + +G+
Sbjct: 72 ELKAKIF--DKDVGTEDDAVGEATIPLEP----VFVEGSIPPTAYNVVK---DEEYKGEI 122
Query: 405 MLAI 408
+A+
Sbjct: 123 WVAL 126
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 2e-18
Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 12/126 (9%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIP-KNLNPVWNQKLLFDFDQTK 60
L V +V A L D + P+ ++ Q K+ P WN+ +F
Sbjct: 11 TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTV---- 66
Query: 61 SHNHLRIEVSIYHHERRPIPGRH-FLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKG 119
S ++ I+ + +G IP + +G + + K KG
Sbjct: 67 SEGTTELKAKIFDKDVG---TEDDAVGEATIPLEPVFVEGSIPPTAYNVVKD---EEYKG 120
Query: 120 EVGLKI 125
E+ + +
Sbjct: 121 EIWVAL 126
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 5e-18
Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 18/141 (12%)
Query: 608 KPPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILD-TFNPKWNEQY 666
P G LEV ++ A+GL + D + D Y + ++ P+WNE +
Sbjct: 6 SGPHGTLEVVLVSAKGL---EDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETF 62
Query: 667 TWEVYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPL 726
+ V + T + +FD K G+ D +G+ I L + +
Sbjct: 63 IFTVSEGTTELKAKIFD--------KDVGT---EDDAVGEATIPLEPVFVEGSIPPTAYN 111
Query: 727 LVLHPHGVKKMGELQLAIRFT 747
+V + GE+ +A+ F
Sbjct: 112 VVKDE---EYKGEIWVALSFK 129
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 2e-15
Identities = 22/109 (20%), Positives = 47/109 (43%), Gaps = 8/109 (7%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFE 509
L V ++ A+ + D + +V++ Q K+ + T P WNE +F +E
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG-T 70
Query: 510 EQLFLTV--EDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEK 556
+L + +D ++D+ +G+ ++PL + +N+ K
Sbjct: 71 TELKAKIFDKDVG--TEDDAVGEATIPLEPVFV---EGSIPPTAYNVVK 114
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 5e-25
Identities = 26/140 (18%), Positives = 44/140 (31%), Gaps = 6/140 (4%)
Query: 266 RGWMSGERFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFE 325
+G + + S L + V+ AK PYVEV + +T+
Sbjct: 17 QGMSDSGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCN 76
Query: 326 KRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLA 385
+P+W Q S L + + + D LG A D+ E + L
Sbjct: 77 NTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSDVLLGTAALDIYETLK--SNNMKLE 132
Query: 386 PQWYRLE--DRRGEGKVRGQ 403
L+ + + G
Sbjct: 133 EVVVTLQLGGDKEPTETIGD 152
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 1e-16
Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 13/135 (9%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFE 509
L++ VI A+ P +V+V V Q KT+ C T +P W + L +
Sbjct: 38 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNN-TNSPKWKQPLTVIVTP--V 94
Query: 510 EQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKE 569
+L V D +LG +L ++ K + + L+ G ++
Sbjct: 95 SKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNM-KLEEVVVTLQLGG-------DKEP 146
Query: 570 LKFSSRVHLRVCLEG 584
+ + L +CL+G
Sbjct: 147 TE--TIGDLSICLDG 159
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 2e-16
Identities = 22/145 (15%), Positives = 46/145 (31%), Gaps = 9/145 (6%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKS 61
+L + V+ A K SP+ EV Q KT+ +P W Q L
Sbjct: 37 QLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIV----- 91
Query: 62 HNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEV 121
++ ++ H+ + LG + ++ + + + L K
Sbjct: 92 TPVSKLHFRVWSHQT--LKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQ--LGGDKEPT 147
Query: 122 GLKIYISPQSETTQPPTSSLPKPKS 146
+S + Q + + ++
Sbjct: 148 ETIGDLSICLDGLQLESEVVTNGET 172
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 5e-15
Identities = 19/138 (13%), Positives = 42/138 (30%), Gaps = 19/138 (13%)
Query: 609 PPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTW 668
L++ ++ A+ K Y + +T +T +PKW + T
Sbjct: 33 TMKSQLQITVISAKLKEN---KKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTV 89
Query: 669 EVYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLV 728
V P + + V+ + L D +G + + ++
Sbjct: 90 IV-TPVSKLHFRVWSHQTLK-----------SDVLLGTAALDIYETLKSNNMKLEEVVVT 137
Query: 729 LHP----HGVKKMGELQL 742
L + +G+L +
Sbjct: 138 LQLGGDKEPTETIGDLSI 155
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 109 bits (272), Expect = 2e-24
Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 9/147 (6%)
Query: 278 YDLVEQM--SYLYVRVVKAKDL---PPSSITGSCDPYVEVKMG---NYKGRTKHFEKRMN 329
+ +VE V V++A + + + DPYVE+ + + + RT+HF +N
Sbjct: 9 HIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDIN 68
Query: 330 PEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWY 389
P WN+ F F + Q ++LE+ L D V D+ LG F ++ + + P
Sbjct: 69 PVWNETFEFILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIFNQV 127
Query: 390 RLEDRRGEGKVRGQTMLAIWMGTQADE 416
+V L M E
Sbjct: 128 TEMVLEMSLEVCSCPDLRFSMALCDQE 154
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 62.7 bits (151), Expect = 4e-10
Identities = 20/122 (16%), Positives = 37/122 (30%), Gaps = 16/122 (13%)
Query: 608 KPPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG---QKWVRTRTILDTFNPKWNE 664
V +L A + D + D Y RTR + NP WNE
Sbjct: 14 HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNE 73
Query: 665 QYTWEVYDP-CTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHS 723
+ + + V+ + + D + V D +G +S+++
Sbjct: 74 TFEFILDPNQENVLEITLMDANY------------VMDETLGTATFTVSSMKVGEKKEVP 121
Query: 724 YP 725
+
Sbjct: 122 FI 123
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 58.4 bits (140), Expect = 8e-09
Identities = 33/205 (16%), Positives = 64/205 (31%), Gaps = 20/205 (9%)
Query: 448 WYLRVNVIEAQDI---VPNDRNRLPEGFVKVQVG---NQVLKTKICPTPTTNPLWNEDLV 501
V V+ A + D P+ +V++ + + +T+ NP+WNE
Sbjct: 18 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHF-NNDINPVWNETFE 76
Query: 502 FVAAEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGA 561
F+ E L +T+ D + DE LG + + +
Sbjct: 77 FILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIFN---------- 125
Query: 562 IEADRRKELKFSSRVHLRVCLEGGYHVLDESTMYISDQRPTAKQLWKPPVGILEVGILGA 621
L+ S V L + D+ + ++ ++ K +G L +
Sbjct: 126 --QVTEMVLEMSLEVCSCPDLRFSMALCDQEKTFRQQRKEHIRESMKKLLGPKNSEGLHS 183
Query: 622 QGLLPMKMKDGRGSTDAYCIAKYGQ 646
+P+ G G + G
Sbjct: 184 ARDVPVVAILGSGGGFRAMVGFSGV 208
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 50.7 bits (120), Expect = 2e-06
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 2 KLVVEVVDAYDLM---PKDGEGSASPFAEV---DFLNQLSKTKTIPKNLNPVWNQKLLFD 55
K V V+ A + D + P+ E+ + +T+ ++NPVWN+ F
Sbjct: 19 KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI 78
Query: 56 FDQTKSHNHLRIEV 69
D N L I +
Sbjct: 79 LD-PNQENVLEITL 91
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 98.8 bits (246), Expect = 2e-24
Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 20/128 (15%)
Query: 286 YLYVRVVKAKDLPP-----------SSITGSCDPYVEVKMGNYK-GRTKHFEKRMNPEWN 333
L +++ +A L P T DPY+ + + + + G+T +K +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 334 QVFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLED 393
F + L VF +G DD++ E+ W LE
Sbjct: 67 DEFVTDVCNGRKIELAVF--HDAPIGYDDFVANCTIQFEELLQNGSRHFED---WIDLEP 121
Query: 394 RRGEGKVR 401
EGKV
Sbjct: 122 ---EGKVY 126
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 6e-17
Identities = 21/148 (14%), Positives = 48/148 (32%), Gaps = 33/148 (22%)
Query: 449 YLRVNVIEAQDIVPNDRNRLPEG-----------FVKVQVGNQ-VLKTKICPTPTTNPLW 496
L++ + EA + P + ++ + V + + +T T +P W
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQK-TNSPAW 65
Query: 497 NEDLVFVAAEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEK 556
+++ V ++ L V D+ + ++ E + W +LE
Sbjct: 66 HDEFVTDVCNG--RKIELAVFHDAPIGYDDFVANCTIQFE--ELLQNGSRHFEDWIDLEP 121
Query: 557 FGFGAIEADRRKELKFSSRVHLRVCLEG 584
G +V++ + L G
Sbjct: 122 EG----------------KVYVIIDLSG 133
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 2e-16
Identities = 26/149 (17%), Positives = 49/149 (32%), Gaps = 31/149 (20%)
Query: 610 PVGILEVGILGAQGLLPMKM--------KDGRGSTDAYCIAKYG-QKWVRTRTILDTFNP 660
G+L++ I A L P + D Y + +T T T +P
Sbjct: 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSP 63
Query: 661 KWNEQYTWEVYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTL--EAHR 718
W++++ +V + I L VF + +G D + I+ L R
Sbjct: 64 AWHDEFVTDVCNG-RKIELAVFHDAPIG-----------YDDFVANCTIQFEELLQNGSR 111
Query: 719 IYTHSYPLLVLHPHGVKKMGELQLAIRFT 747
+ L + G++ + I +
Sbjct: 112 HFEDWIDL--------EPEGKVYVIIDLS 132
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 70.6 bits (173), Expect = 2e-14
Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 29/144 (20%)
Query: 2 KLVVEVVDAYDLMPKD-----------GEGSASPFAEVDFLNQ-LSKTKTIPKNLNPVWN 49
L +++ +A L P P+ ++ + + +T T K +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 50 QKLLFDFDQTKSHNHLRIEVSIYHHERRPIPGRH-FLGRVRIPCSNLVRKGEEVYQR-FP 107
+ F D IE++++H G F+ I L++ G ++
Sbjct: 67 DE--FVTDVCNGRK---IELAVFHDAP---IGYDDFVANCTIQFEELLQNGSRHFEDWID 118
Query: 108 LEKKWFLSSVKGEVGLKIYISPQS 131
LE +G+V + I +S S
Sbjct: 119 LEP-------EGKVYVIIDLSGSS 135
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 9e-24
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 10/130 (7%)
Query: 1 MKLVVEVVDAYDLMPKDGEGSASPFAEV--DFLNQLSKTKTIPKNLNPVWNQKLLFDFDQ 58
+K+ + V+ A +L KD PFA++ D Q T T+ L+P WNQ +D
Sbjct: 5 IKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQH--YDLYV 62
Query: 59 TKSHNHLRIEVSIY-HHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSS- 116
K+ I +S++ H + G FLG VR+ + + R + YQR L K +
Sbjct: 63 GKTD---SITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTD 119
Query: 117 -VKGEVGLKI 125
V+G++ + +
Sbjct: 120 AVRGQIVVSL 129
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 4e-18
Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 9/127 (7%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKM--GNYKGRTKHFEKRMNPEWNQVFAFSKERIQ 344
+ + V+ AK+L DP+ ++ + T + ++P+WNQ + +
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD 66
Query: 345 SSMLEVFLKDKEMVGRDD---YLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVR 401
S + V+ + + + + +LG V N + D+ + VR
Sbjct: 67 SITISVW--NHKKIHKKQGAGFLGCVRLLSNAISR--LKDTGYQRLDLCKLNPSDTDAVR 122
Query: 402 GQTMLAI 408
GQ ++++
Sbjct: 123 GQIVVSL 129
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 3e-12
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV--GNQVLKTKICPTPTTNPLWNEDLVFVAAEP 507
+R+ V+ A+++ D RLP+ F K+ V Q T T +P WN+
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVK-NTLDPKWNQHYDLY--VG 63
Query: 508 FEEQLFLTVEDRVHASKDE---VLGKISLPLH 536
+ + ++V + K + LG + L +
Sbjct: 64 KTDSITISVWNHKKIHKKQGAGFLGCVRLLSN 95
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 1e-11
Identities = 22/137 (16%), Positives = 48/137 (35%), Gaps = 16/137 (11%)
Query: 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKY--GQKWVRTRTILDTFNPKWNEQYTWEVY 671
+ + +L A+ L D D + + T T+ +T +PKWN+ Y V
Sbjct: 7 IRLTVLCAKNLAKK---DFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVG 63
Query: 672 DPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTL--EAHRIYTHSYPLLVL 729
+ IT+ V++ + +G VR+ + + Y +
Sbjct: 64 KTDS-ITISVWN--------HKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLN 114
Query: 730 HPHGVKKMGELQLAIRF 746
G++ ++++
Sbjct: 115 PSDTDAVRGQIVVSLQT 131
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 93.5 bits (232), Expect = 3e-22
Identities = 29/127 (22%), Positives = 46/127 (36%), Gaps = 17/127 (13%)
Query: 286 YLYVRVVKAKDLPP----------SSITGSCDPYVEVKMGNYK-GRTKHFEKRMNPEWNQ 334
YL VR+ +A L P DPY+ V + + G+T +K P +N+
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89
Query: 335 VFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDR 394
F + LE+ + + +G D ++ E+ S W LE
Sbjct: 90 EFCANVT--DGGHLELAVFHETPLGYDHFVANCTLQFQELLRT-TGASDTFEGWVDLEPE 146
Query: 395 RGEGKVR 401
GKV
Sbjct: 147 ---GKVF 150
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 83.5 bits (206), Expect = 8e-19
Identities = 26/147 (17%), Positives = 43/147 (29%), Gaps = 30/147 (20%)
Query: 449 YLRVNVIEAQDIVPNDRNRLPEG----------FVKVQVGNQVL-KTKICPTPTTNPLWN 497
YLRV + EA + P + ++ V V + +T T P +N
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQ-KTNKPTYN 88
Query: 498 EDLVFVAAEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKF 557
E+ + L L V D + +L + W +LE
Sbjct: 89 EEFCANVTDGGH--LELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEPE 146
Query: 558 GFGAIEADRRKELKFSSRVHLRVCLEG 584
G +V + + L G
Sbjct: 147 G----------------KVFVVITLTG 157
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 80.4 bits (198), Expect = 1e-17
Identities = 36/157 (22%), Positives = 52/157 (33%), Gaps = 26/157 (16%)
Query: 600 RPTAKQLWKPPVGILEVGILGAQGLLPMKM-------KDGRGSTDAYCIAKYGQKWV-RT 651
R + G L V I A GL P + K G D Y Q V +T
Sbjct: 17 RGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQT 76
Query: 652 RTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRL 711
T T P +NE++ V D + L VF LG D + ++
Sbjct: 77 STKQKTNKPTYNEEFCANVTDG-GHLELAVFHETPLG-----------YDHFVANCTLQF 124
Query: 712 STLEAHRIYTHSYPLLV-LHPHGVKKMGELQLAIRFT 747
L + ++ V L P G++ + I T
Sbjct: 125 QELLRTTGASDTFEGWVDLEPE-----GKVFVVITLT 156
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 2e-13
Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 24/136 (17%)
Query: 2 KLVVEVVDAYDLMPKD----------GEGSASPFAEVDFLNQ-LSKTKTIPKNLNPVWNQ 50
L V + +A L P G P+ V + +T T K P +N+
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89
Query: 51 KLLFDFDQTKSHNHLRIEVSIYHHERRPIPGRH-FLGRVRIPCSNLVRKGEEVYQRFPLE 109
+ F + T + +E++++H G F+ + L+R
Sbjct: 90 E--FCANVTDGGH---LELAVFHETPL---GYDHFVANCTLQFQELLRTTGA----SDTF 137
Query: 110 KKWFLSSVKGEVGLKI 125
+ W +G+V + I
Sbjct: 138 EGWVDLEPEGKVFVVI 153
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 1e-21
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 22/125 (17%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKM--------------GNYKGRTKHFEKRMNPEW 332
L + +++A++L P G DP+V+V + YK RTK+ +K +NPEW
Sbjct: 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79
Query: 333 NQVFAF---SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWY 389
NQ + S E++ LEV + D + +D+LG V DL+ P+WY
Sbjct: 80 NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDN-----TPRWY 134
Query: 390 RLEDR 394
L+++
Sbjct: 135 PLKEQ 139
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 1e-14
Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 19/125 (15%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFL--------------NQLSKTKTIPKNLNPV 47
L++ ++ A +L+P+D G + PF +V L +TK + K+LNP
Sbjct: 19 NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPE 78
Query: 48 WNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIPGRH-FLGRVRIPCSNLVRKGEEVYQRF 106
WNQ +++ + +EV+++ ++R + FLG V I S+ + + +
Sbjct: 79 WNQTVIYKSISMEQLMKKTLEVTVWDYDRF---SSNDFLGEVLIDLSST-SHLDNTPRWY 134
Query: 107 PLEKK 111
PL+++
Sbjct: 135 PLKEQ 139
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 1e-11
Identities = 29/131 (22%), Positives = 58/131 (44%), Gaps = 26/131 (19%)
Query: 446 KLWY----LRVNVIEAQDIVPNDRNRLPEGFVKV--------------QVGNQVLKTKIC 487
++ Y L +++++A+++VP D N + FVKV +TK
Sbjct: 12 QINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYV 71
Query: 488 PTPTTNPLWNEDLVFVA---AEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDH 544
+ NP WN+ +++ + + ++ L +TV D S ++ LG++ + L H
Sbjct: 72 QK-SLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL----SSTSH 126
Query: 545 RPVHSRWFNLE 555
RW+ L+
Sbjct: 127 LDNTPRWYPLK 137
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 4e-07
Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 32/134 (23%)
Query: 612 GILEVGILGAQGLLPMKMKDGRGSTDAYC--------------IAKYGQKWVRTRTILDT 657
G L + IL A+ L+P D G +D + + RT+ + +
Sbjct: 18 GNLIIHILQARNLVPR---DNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKS 74
Query: 658 FNPKWNEQYTWEVYDP----CTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLST 713
NP+WN+ ++ + + V+D + +G+V I LS+
Sbjct: 75 LNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFS-----------SNDFLGEVLIDLSS 123
Query: 714 LEAHRIYTHSYPLL 727
YPL
Sbjct: 124 TSHLDNTPRWYPLK 137
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 5e-21
Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 13/127 (10%)
Query: 274 FTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKM---GNYKGRTKHFEKRMNP 330
F+ Y+ Q S L V+++KA++LP +G+ DP+V++ + +K TK K +NP
Sbjct: 17 FSVGYN--FQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNP 74
Query: 331 EWNQVFAF---SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQ 387
WN+ F F E++ +L + + D + R+D +G V+ LN+V + +
Sbjct: 75 HWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL-----TQMQTF 129
Query: 388 WYRLEDR 394
W L+
Sbjct: 130 WKDLKPS 136
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 2e-15
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFL---NQLSKTKTIPKNLNPVWNQKLLFDFDQ 58
L V+++ A +L KD G++ PF ++ L +TK KNLNP WN+ LF+
Sbjct: 27 TLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFP 86
Query: 59 TKSHNHLRIEVSIYHHERRPIPGRH-FLGRVRIPCSNLVRKGEEVYQRFPLEKK 111
+ + + + ++R R+ +G V IP + + + L+
Sbjct: 87 YEKVVQRILYLQVLDYDRF---SRNDPIGEVSIPLNKV-DLTQMQTFWKDLKPS 136
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 1e-13
Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 17/123 (13%)
Query: 446 KLWY------LRVNVIEAQDIVPNDRNRLPEGFVKVQV---GNQVLKTKICPTPTTNPLW 496
+ Y L V +++AQ++ D + + FVK+ + L+TK+ NP W
Sbjct: 18 SVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRK-NLNPHW 76
Query: 497 NEDLVF---VAAEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFN 553
NE +F + + L+L V D S+++ +G++S+PL ++D + + W +
Sbjct: 77 NETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPL----NKVDLTQMQTFWKD 132
Query: 554 LEK 556
L+
Sbjct: 133 LKP 135
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 6e-08
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 21/122 (17%)
Query: 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKY---GQKWVRTRTILDTFNPKWNEQYTW 668
L V I+ AQ L D G++D + + + T+ NP WNE + +
Sbjct: 26 STLTVKIMKAQELPAK---DFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF 82
Query: 669 EVYDPCTVIT----LGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSY 724
E + V+ L V D R+ IG+V I L+ ++ ++ T
Sbjct: 83 EGFPYEKVVQRILYLQVLDYDRFS-----------RNDPIGEVSIPLNKVDLTQMQTFWK 131
Query: 725 PL 726
L
Sbjct: 132 DL 133
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 8e-21
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 274 FTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKM---GNYKGRTKHFEKRMNP 330
++ YD Q + L V +++A +LP + G+ DPYV+V + K TK K +NP
Sbjct: 25 YSLDYD--FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNP 82
Query: 331 EWNQVFAF--SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQW 388
+N+ F F + L + + D + + D +G +N V +W
Sbjct: 83 VFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNT----VDFGHVT-EEW 137
Query: 389 YRLE 392
L+
Sbjct: 138 RDLQ 141
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-14
Identities = 26/112 (23%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFL---NQLSKTKTIPKNLNPVWNQKLLFDFDQ 58
+L+V ++ A +L D G++ P+ +V L + +TK K LNPV+N++ F
Sbjct: 35 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 94
Query: 59 TKSHNHLRIEVSIYHHERRPIPGRH-FLGRVRIPCSNLVRKGEEVYQRFPLE 109
++ + +++Y +R +H +G ++P + V G + L+
Sbjct: 95 SELGGK-TLVMAVYDFDRF---SKHDIIGEFKVPMNT-VDFGHVTEEWRDLQ 141
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 2e-12
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 16/121 (13%)
Query: 446 KLWY------LRVNVIEAQDIVPNDRNRLPEGFVKVQV---GNQVLKTKICPTPTTNPLW 496
L Y L V +I+A ++ D + +VKV + + +TK+ T NP++
Sbjct: 26 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVF 84
Query: 497 NEDLVFV--AAEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNL 554
NE F +E + L + V D SK +++G+ +P+ +D V W +L
Sbjct: 85 NEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM----NTVDFGHVTEEWRDL 140
Query: 555 E 555
+
Sbjct: 141 Q 141
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 7e-08
Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 20/122 (16%)
Query: 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAK---YGQKWVRTRTILDTFNPKWNEQYTW 668
L VGI+ A L + D G++D Y +K T+ T NP +NEQ+T+
Sbjct: 34 NQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 90
Query: 669 EVYD---PCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYP 725
+V + + V+D + IG+ ++ ++T++ +
Sbjct: 91 KVPYSELGGKTLVMAVYDFDRFS-----------KHDIIGEFKVPMNTVDFGHVTEEWRD 139
Query: 726 LL 727
L
Sbjct: 140 LQ 141
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 1e-20
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 283 QMSYLYVRVVKAKDLPPSSITGSCDPYVEVKM-----GNYKGRTKHFEKRMNPEWNQVFA 337
L V V AK+L P G DPYV++K+ K +TK + +NPEWN+ F
Sbjct: 29 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFR 88
Query: 338 FS-KERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDR 394
F KE + L V + D ++ R+D++G ++F ++E+ W++L +
Sbjct: 89 FQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL------QKAGVDGWFKLLSQ 140
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 8e-17
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLS-----KTKTIPKNLNPVWNQKLLFDF 56
L+V V DA +L+P D G + P+ ++ + KTKTI +LNP WN+ F
Sbjct: 32 VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 91
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGRH-FLGRVRIPCSNLVRKGEEVYQRFPLEKK 111
++ L +E+ + + R+ F+G + S L + V F L +
Sbjct: 92 KESDKDRRLSVEI--WDWDLT---SRNDFMGSLSFGISEL--QKAGVDGWFKLLSQ 140
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 6e-13
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 446 KLWY----LRVNVIEAQDIVPNDRNRLPEGFVKVQV-----GNQVLKTKICPTPTTNPLW 496
+ L V V +A+++VP D N L + +VK+++ KTK + NP W
Sbjct: 25 QAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC-SLNPEW 83
Query: 497 NEDLVF-VAAEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLE 555
NE F + + +L + + D S+++ +G +S + L V WF L
Sbjct: 84 NETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGI----SELQKAGVD-GWFKLL 138
Query: 556 K 556
Sbjct: 139 S 139
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 3e-09
Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 22/123 (17%)
Query: 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCI-----AKYGQKWVRTRTILDTFNPKWNEQY 666
+L V + A+ L+PM D G +D Y + +T+TI + NP+WNE +
Sbjct: 31 EVLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETF 87
Query: 667 TWEVY--DPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSY 724
+++ D +++ ++D R+ +G + +S L+ + +
Sbjct: 88 RFQLKESDKDRRLSVEIWDWDLTS-----------RNDFMGSLSFGISELQKAGV-DGWF 135
Query: 725 PLL 727
LL
Sbjct: 136 KLL 138
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 2e-20
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 12/124 (9%)
Query: 274 FTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGR---TKHFEKRMNP 330
++ YD Q + L V +++A +LP + G+ DPYV+V + K + TK K +NP
Sbjct: 33 YSLDYD--FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNP 90
Query: 331 EWNQVFAF--SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQW 388
+N+ F F + L + + D + + D +G +N V +W
Sbjct: 91 VFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNT----VDFGHVT-EEW 145
Query: 389 YRLE 392
L+
Sbjct: 146 RDLQ 149
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 2e-14
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLS---KTKTIPKNLNPVWNQKLLFDFDQ 58
+L+V ++ A +L D G++ P+ +V L +TK K LNPV+N++ F
Sbjct: 43 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 102
Query: 59 TKSHNHLRIEVSIYHHERRPIPGRH-FLGRVRIPCSNLVRKGEEVYQRFPLE 109
++ + +++Y +R +H +G ++P + V G + L+
Sbjct: 103 SELGGK-TLVMAVYDFDRF---SKHDIIGEFKVPMNT-VDFGHVTEEWRDLQ 149
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 5e-12
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 16/121 (13%)
Query: 446 KLWY------LRVNVIEAQDIVPNDRNRLPEGFVKVQV---GNQVLKTKICPTPTTNPLW 496
L Y L V +I+A ++ D + +VKV + + +TK+ T NP++
Sbjct: 34 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVF 92
Query: 497 NEDLVFV--AAEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNL 554
NE F +E + L + V D SK +++G+ +P+ +D V W +L
Sbjct: 93 NEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM----NTVDFGHVTEEWRDL 148
Query: 555 E 555
+
Sbjct: 149 Q 149
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 6e-08
Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 20/122 (16%)
Query: 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAK---YGQKWVRTRTILDTFNPKWNEQYTW 668
L VGI+ A L + D G++D Y +K T+ T NP +NEQ+T+
Sbjct: 42 NQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 98
Query: 669 EVYD---PCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYP 725
+V + + V+D + IG+ ++ ++T++ +
Sbjct: 99 KVPYSELGGKTLVMAVYDFDRFS-----------KHDIIGEFKVPMNTVDFGHVTEEWRD 147
Query: 726 LL 727
L
Sbjct: 148 LQ 149
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 2e-20
Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 16/121 (13%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAF--S 339
+ V ++KA++L I G+ DPYV+V + K +T ++ +NP +N+ FAF
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIP 77
Query: 340 KERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVP--------PDSPLAPQWYRL 391
E+++ + + + + DK+ + R+D +G++ P V P P+A QW++L
Sbjct: 78 TEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVA-QWHQL 136
Query: 392 E 392
+
Sbjct: 137 K 137
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 3e-13
Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLS-----KTKTIPKNLNPVWNQKLLFDF 56
++V ++ A +L D G++ P+ +V + + KT T +NLNP++N+ FD
Sbjct: 17 SIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDI 76
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCS 93
K I +++ ++ + +G++ +
Sbjct: 77 PTEKLRET-TIIITVMDKDK--LSRNDVIGKIYLSWK 110
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 2e-12
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 18/122 (14%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV--GNQVL---KTKICPTPTTNPLWNEDLVF-V 503
+ VN+I+A+++ D + +VKV + ++ + KT NP++NE F +
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKR-NLNPIFNESFAFDI 76
Query: 504 AAEPFEE-QLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDH---------RPVHSRWFN 553
E E + +TV D+ S+++V+GKI L + H +PV ++W
Sbjct: 77 PTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPV-AQWHQ 135
Query: 554 LE 555
L+
Sbjct: 136 LK 137
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 22/113 (19%)
Query: 609 PPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAK--YGQKWV---RTRTILDTFNPKWN 663
P + V I+ A+ L M D G++D Y Y K V +T T NP +N
Sbjct: 13 PSANSIIVNIIKARNLKAM---DIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFN 69
Query: 664 EQYTWEVYD---PCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLST 713
E + +++ T I + V D L R+ IGK+ + +
Sbjct: 70 ESFAFDIPTEKLRETTIIITVMDKDKLS-----------RNDVIGKIYLSWKS 111
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 3e-20
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 20/150 (13%)
Query: 264 GGRGWMSGE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEV-----KMGNY 317
G G G+ +D + L V ++ AKDLP +PYV++ +
Sbjct: 1 GSSGSSGGQLSIKLWFD--KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKN 58
Query: 318 KGRTKHFEKRMNPEWNQVFAF---SKERIQSSMLEVFLKDKEMV--GRDDYLGRVAFDLN 372
K RTK +K + P+WNQ F + + + MLE+ L D+ V ++LG + +L
Sbjct: 59 KRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELE 118
Query: 373 EVPTRVPPDSPLAPQWYRLEDRRGEGKVRG 402
P WY+L+ G G
Sbjct: 119 TA------LLDDEPHWYKLQT-HDSGPSSG 141
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 4e-16
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLS-----KTKTIPKNLNPVWNQKLLFDF 56
+L+V ++ A DL ++ +P+ ++ FL S +TKT+ K L P WNQ ++
Sbjct: 22 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSP 81
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEV 102
+ +E++++ R FLG + I + E
Sbjct: 82 VHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 127
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 2e-12
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 24/127 (18%)
Query: 446 KLWY------LRVNVIEAQDIVPNDRNRLPEGFVKVQV-----GNQVLKTKICPTPTTNP 494
KLW+ L V ++ A+D+ + R +VK+ +TK T P
Sbjct: 13 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVK-KTLEP 71
Query: 495 LWNEDLVFVAAEPFEE----QLFLTV--EDRVHASKDEVLGKISLPLHIFEKRLDHRPVH 548
WN+ ++ + E L +T+ + RV + E LG+I + L LD P
Sbjct: 72 KWNQTFIY-SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELE--TALLDDEP-- 126
Query: 549 SRWFNLE 555
W+ L+
Sbjct: 127 -HWYKLQ 132
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 22/125 (17%)
Query: 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIA-----KYGQKWVRTRTILDTFNPKWNEQY 666
L V ILGA+ L + + Y + + RT+T+ T PKWN+ +
Sbjct: 21 HQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 77
Query: 667 TWEVYDPCTVIT----LGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTH 722
+ + ++D + +G++ I L T H
Sbjct: 78 IYSPVHRREFRERMLEITLWDQARVREE---------ESEFLGEILIELETALLDDE-PH 127
Query: 723 SYPLL 727
Y L
Sbjct: 128 WYKLQ 132
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 7e-20
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAF--S 339
L V +++AK+L + G DPYV++ + K +T + +NP +N+ F+F
Sbjct: 27 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86
Query: 340 KERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRV--------PPDSPLAPQWYRL 391
E+IQ + V + D + +G++D +G+V N + P P+A QW+ L
Sbjct: 87 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QWHTL 145
Query: 392 EDR 394
+
Sbjct: 146 QVE 148
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 2e-12
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTP----TTNPLWNEDLVF-VA 504
L V ++EA+++ D L + +VK+ + + K T T NP +NE F V
Sbjct: 27 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86
Query: 505 AEPFEE-QLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDH---------RPVHSRWFNL 554
E ++ Q+ +TV D K++ +GK+ + + L H RP+ ++W L
Sbjct: 87 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPI-AQWHTL 145
Query: 555 E 555
+
Sbjct: 146 Q 146
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 1e-11
Identities = 19/97 (19%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLS-----KTKTIPKNLNPVWNQKLLFDF 56
KL V +++A +L D G + P+ ++ + KT LNP +N+ F+
Sbjct: 26 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 85
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCS 93
+ ++ V++ +++ I +G+V + +
Sbjct: 86 PFEQIQKV-QVVVTVLDYDK--IGKNDAIGKVFVGYN 119
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 8e-04
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 609 PPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAK--YGQKWV---RTRTILDTFNPKWN 663
P G L V IL A+ L M D G +D Y K + +T +T NP +N
Sbjct: 22 PTAGKLTVVILEAKNLKKM---DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYN 78
Query: 664 EQYTWEV 670
E +++EV
Sbjct: 79 ESFSFEV 85
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 8e-20
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 15/127 (11%)
Query: 274 FTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKM-----GNYKGRTKHFEKRM 328
F+ YD + S L +++AK L P G DPYV++ + + K RTK
Sbjct: 20 FSLLYD--QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTR 77
Query: 329 NPEWNQVFAF---SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLA 385
NP WN+ + ++E +Q L + + D++ G ++++G F L ++ +
Sbjct: 78 NPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKN---- 133
Query: 386 PQWYRLE 392
LE
Sbjct: 134 -FNICLE 139
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 1e-16
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 10/115 (8%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLS-----KTKTIPKNLNPVWNQKLLFDF 56
L ++ A L P D G A P+ ++ L S +TKT+ NPVWN+ L +
Sbjct: 30 NLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHG 89
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGRH-FLGRVRIPCSNLVRKGEEVYQRFPLEK 110
+ + +S+ ++ G + F+G R L + + LE+
Sbjct: 90 ITEEDMQRKTLRISVCDEDKF---GHNEFIGETRFSLKKLKANQRKNFNI-CLER 140
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 2e-13
Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 17/146 (11%)
Query: 419 AEAWHSDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQV- 477
A ++ SD ++ G + + L+ +I A+ + P D N L + +VK+ +
Sbjct: 4 ANSYDSDQATTLGA----LEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLL 59
Query: 478 ----GNQVLKTKICPTPTTNPLWNEDLVF--VAAEPFEEQ-LFLTVEDRVHASKDEVLGK 530
+ L+TK T NP+WNE L + + E + + L ++V D +E +G+
Sbjct: 60 PGASKSNKLRTKTLRN-TRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGE 118
Query: 531 ISLPLHIFEKRLDHRPVHSRWFNLEK 556
L K+L + LE+
Sbjct: 119 TRFSL----KKLKANQRKNFNICLER 140
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 2e-08
Identities = 30/124 (24%), Positives = 46/124 (37%), Gaps = 23/124 (18%)
Query: 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIA-----KYGQKWVRTRTILDTFNPKWNEQY 666
L+ I+ A+GL PM D G D Y +RT+T+ +T NP WNE
Sbjct: 29 SNLQCTIIRAKGLKPM---DSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETL 85
Query: 667 TWEVYDPC----TVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTH 722
+ + + V D G + IG+ R L L+A++
Sbjct: 86 QYHGITEEDMQRKTLRISVCDEDKFG-----------HNEFIGETRFSLKKLKANQRKNF 134
Query: 723 SYPL 726
+ L
Sbjct: 135 NICL 138
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 1e-19
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 19/136 (13%)
Query: 268 WMSGE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEV-----KMGNYKGRT 321
++SG+ +D + L V ++ AKDLP +PYV++ + K RT
Sbjct: 2 FLSGQLSIKLWFD--KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRT 59
Query: 322 KHFEKRMNPEWNQVFAF---SKERIQSSMLEVFLKDKEMV--GRDDYLGRVAFDLNEVPT 376
K +K + P+WNQ F + + + MLE+ L D+ V ++LG + +L
Sbjct: 60 KTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA-- 117
Query: 377 RVPPDSPLAPQWYRLE 392
P WY+L+
Sbjct: 118 ----LLDDEPHWYKLQ 129
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 2e-16
Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLS-----KTKTIPKNLNPVWNQKLLFDF 56
+L+V ++ A DL ++ +P+ ++ FL S +TKT+ K L P WNQ ++
Sbjct: 19 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSP 78
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLE 109
+ +E++++ R FLG + I + E + + L+
Sbjct: 79 VHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHW--YKLQ 129
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 3e-13
Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 26/136 (19%)
Query: 437 IRSKVYVSPKLWY------LRVNVIEAQDIVPNDRNRLPEGFVKV-----QVGNQVLKTK 485
+ ++ + LW+ L V ++ A+D+ + R +VK+ + +TK
Sbjct: 3 LSGQLSIK--LWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTK 60
Query: 486 ICPTPTTNPLWNEDLVFVAAEPFEE----QLFLTV--EDRVHASKDEVLGKISLPLHIFE 539
T P WN+ ++ E L +T+ + RV + E LG+I + L
Sbjct: 61 TVK-KTLEPKWNQTFIYSPV-HRREFRERMLEITLWDQARVREEESEFLGEILIELE--T 116
Query: 540 KRLDHRPVHSRWFNLE 555
LD P W+ L+
Sbjct: 117 ALLDDEPH---WYKLQ 129
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 22/124 (17%)
Query: 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIA-----KYGQKWVRTRTILDTFNPKWNEQY 666
L V ILGA+ L + + Y + + RT+T+ T PKWN+ +
Sbjct: 18 HQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 74
Query: 667 TWEVYDPCT----VITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTH 722
+ ++ + ++D + +G++ I L T H
Sbjct: 75 IYSPVHRREFRERMLEITLWDQARVREE---------ESEFLGEILIELETALLDDE-PH 124
Query: 723 SYPL 726
Y L
Sbjct: 125 WYKL 128
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 2e-19
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 16/122 (13%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAF--S 339
L V V+KA+ LP S ++G DPYV+V + + K +T + N +N++F F
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 91
Query: 340 KERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVP--------PDSPLAPQWYRL 391
E ++ +E + D E R++ +GR+ + P +A +W+ L
Sbjct: 92 CESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIA-KWHML 150
Query: 392 ED 393
D
Sbjct: 151 CD 152
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 3e-12
Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 8/97 (8%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLS-----KTKTIPKNLNPVWNQKLLFDF 56
L V V+ A L D G + P+ +V+ + KT N V+N+ +FD
Sbjct: 31 TLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDI 90
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCS 93
+E + ER +GR+ + +
Sbjct: 91 PCESLEEI-SVEFLVLDSER--GSRNEVIGRLVLGAT 124
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 3e-12
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 16/120 (13%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV--GNQVL---KTKICPTPTTNPLWNEDLVF-V 503
L V V++A+ + +D + L + +VKV + + + KT + T N ++NE VF +
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC-TPNAVFNELFVFDI 90
Query: 504 AAEPFEE-QLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDH--------RPVHSRWFNL 554
E EE + V D S++EV+G++ L H R ++W L
Sbjct: 91 PCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHML 150
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 609 PPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAK--YGQKWV---RTRTILDTFNPKWN 663
L V +L A+ L D G +D Y + +K + +T T N +N
Sbjct: 27 STTNTLTVVVLKARHLPKS---DVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFN 83
Query: 664 EQYTWEV 670
E + +++
Sbjct: 84 ELFVFDI 90
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 2e-19
Identities = 24/123 (19%), Positives = 55/123 (44%), Gaps = 16/123 (13%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGR-----TKHFEKRMNPEWNQVFAF--S 339
L V +++ L G DP+V++ + G+ T+ +K +NPE+N+ F +
Sbjct: 39 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 98
Query: 340 KERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVP--------PDSPLAPQWYRL 391
+ L++ + D ++ +DY+G ++ R+ D + +W++L
Sbjct: 99 HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIE-RWHQL 157
Query: 392 EDR 394
++
Sbjct: 158 QNE 160
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 2e-12
Identities = 18/97 (18%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLS-----KTKTIPKNLNPVWNQKLLFDF 56
L+V ++ L D G + PF ++ + KT+ K LNP +N++ +D
Sbjct: 38 GLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDI 97
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCS 93
+ +++S++ ++ ++G ++ S
Sbjct: 98 KHSD-LAKKSLDISVWDYDI--GKSNDYIGGCQLGIS 131
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 2e-12
Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 24/131 (18%)
Query: 446 KLWY------LRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQV-----LKTKICPTPTTNP 494
L Y L V +I + D N + FVK+ + + KT+I T NP
Sbjct: 29 SLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK-TLNP 87
Query: 495 LWNEDLVF-VAAEPFEE-QLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDH-------- 544
+NE+ + + + L ++V D ++ +G L + +RL H
Sbjct: 88 EFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNK 147
Query: 545 -RPVHSRWFNL 554
+ + RW L
Sbjct: 148 DKKIE-RWHQL 157
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 609 PPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAK--YGQKWV---RTRTILDTFNPKWN 663
G L VGI+ L M D G +D + +T+ T NP++N
Sbjct: 34 TQQGGLIVGIIRCVHLAAM---DANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFN 90
Query: 664 EQYTWEV 670
E++ +++
Sbjct: 91 EEFFYDI 97
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 4e-19
Identities = 21/122 (17%), Positives = 40/122 (32%), Gaps = 14/122 (11%)
Query: 278 YDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKM------GNYKGRTKHFEKRMNPE 331
YD E+ + +++ +L + V + RT+ +
Sbjct: 38 YD--EKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLV 95
Query: 332 WNQVFAF--SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWY 389
+N+VF S + L V + + ++ LG L E V + +WY
Sbjct: 96 FNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAE----VCRSGERSTRWY 151
Query: 390 RL 391
L
Sbjct: 152 NL 153
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 2e-13
Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 11/114 (9%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFL------NQLSKTKTIPKNLNPVWNQKLLFD 55
+ + ++ +L + V L L +T+ + + V+N+
Sbjct: 44 QFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVS 103
Query: 56 FDQTKSHNHLRIEVSIYHHERRPIPGRH-FLGRVRIPCSNLVRKGEEVYQRFPL 108
H + V + +R LG +I + + R GE + + L
Sbjct: 104 MSYPALHQK-TLRVDVCTTDRS---HLEECLGGAQISLAEVCRSGERSTRWYNL 153
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 2e-11
Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 18/123 (14%)
Query: 446 KLWY------LRVNVIEAQDIVPNDRNRLPEGFVKVQV------GNQVLKTKICPTPTTN 493
L Y + +I+ ++ + + + ++V V + +T+ +
Sbjct: 35 ALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLD-ASDT 93
Query: 494 PLWNEDLVF-VAAEPFEEQ-LFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRW 551
++NE ++ ++ L + V + +E LG + L + +RW
Sbjct: 94 LVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRS---GERSTRW 150
Query: 552 FNL 554
+NL
Sbjct: 151 YNL 153
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 15/126 (11%), Positives = 34/126 (26%), Gaps = 24/126 (19%)
Query: 612 GILEVGILGAQGLLPMKMKDGRGSTDAYC------IAKYGQKWVRTRTILDTFNPKWNEQ 665
+ I+ L + + ++ RTR + + +NE
Sbjct: 43 KQFAILIIQLSNLSAL---LQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEV 99
Query: 666 YTWEVYD---PCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLE-AHRIYT 721
+ + + + V + +G +I L+ + + T
Sbjct: 100 FWVSMSYPALHQKTLRVDVCTTDRSH-----------LEECLGGAQISLAEVCRSGERST 148
Query: 722 HSYPLL 727
Y LL
Sbjct: 149 RWYNLL 154
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 2e-18
Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 274 FTSTYDLVEQMSYLYVRVVKAKDLPPSSITG-SCDPYVEVKM---GNYKGRTKHFEKRMN 329
F+ Y+ + V + +A+ LP + DPY+++ + +K +T+ K ++
Sbjct: 13 FSLEYN--FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLD 70
Query: 330 PEWNQVFAF---SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVP 375
P +++ F F +IQ L + + RDD +G V L+ +
Sbjct: 71 PAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIE 119
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 1e-13
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
Query: 2 KLVVEVVDAYDLMPKDGEGSAS-PFAEVDFLNQLS---KTKTIPKNLNPVWNQKLLFDFD 57
VV + +A L D + S P+ ++ L + KT+ + K L+P +++ F
Sbjct: 23 AFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGI 82
Query: 58 QTKSHNHLRIEVSIYHHERRPIPGRH-FLGRVRIPCSNL 95
L + +I +R R +G V IP S +
Sbjct: 83 PYTQIQELALHFTILSFDRF---SRDDIIGEVLIPLSGI 118
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-09
Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 424 SDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEG-FVKVQV---GN 479
S SS G F++ Y + + VN+ EA+ + D + ++K+ +
Sbjct: 2 SSGSSGLGTLFFSLE---Y-NFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKK 57
Query: 480 QVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQ---LFLTVEDRVHASKDEVLGKISLPL 535
+KT++ T +P ++E F + Q L T+ S+D+++G++ +PL
Sbjct: 58 HKVKTRVLRK-TLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPL 115
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 20/111 (18%)
Query: 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAK---YGQKWVRTRTILDTFNPKWNEQYTW 668
V I A+GL M + ++D Y + V+TR + T +P ++E +T+
Sbjct: 22 KAFVVNIKEARGLPAMDEQ--SMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTF 79
Query: 669 EVYDPCTV----ITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLE 715
+ + + RD IG+V I LS +E
Sbjct: 80 YGIPYTQIQELALHFTILSFDRFS-----------RDDIIGEVLIPLSGIE 119
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 3e-18
Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 16/127 (12%)
Query: 274 FTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKM----GNYKGRTKHFEKRMN 329
+ YD Q + L+V ++A G CD YV+ + G+ + +T +++++
Sbjct: 17 YCLDYD--CQKAELFVTRLEAVTSNHD---GGCDCYVQGSVANRTGSVEAQTALKKRQLH 71
Query: 330 PEWNQVFAF--SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQ 387
W + ++E + ++ L + L+ + R G + L+ + Q
Sbjct: 72 TTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAA-----Q 126
Query: 388 WYRLEDR 394
W L+
Sbjct: 127 WGELKTS 133
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 9e-11
Identities = 15/115 (13%), Positives = 39/115 (33%), Gaps = 13/115 (11%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEV----DFLNQLSKTKTIPKNLNPVWNQKLLFDFD 57
+L V ++A + +G + + + ++T + L+ W + L+
Sbjct: 27 ELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLA 83
Query: 58 QTKSHNHLRIEVSIYHHERRPIPGRH-FLGRVRIPCSNLVRKGEEVYQRFPLEKK 111
+ + + +++ +R RH G +R+ Q L+
Sbjct: 84 EEELPTA-TLTLTLRTCDRF---SRHSVAGELRLGLDG-TSVPLGAAQWGELKTS 133
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 2e-10
Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 20/122 (16%)
Query: 446 KLWY------LRVNVIEAQDIVPNDRNRLPEGFVKVQV----GNQVLKTKICPTPTTNPL 495
L Y L V +EA + + + +V+ V G+ +T + +
Sbjct: 18 CLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKR-QLHTT 73
Query: 496 WNEDLVF-VAAEPFEEQ-LFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFN 553
W E LV +A E L LT+ S+ V G++ L L ++W
Sbjct: 74 WEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGL----DGTSVPLGAAQWGE 129
Query: 554 LE 555
L+
Sbjct: 130 LK 131
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 20/122 (16%), Positives = 30/122 (24%), Gaps = 24/122 (19%)
Query: 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAK----YGQKWVRTRTILDTFNPKWNEQYT 667
L V L A + G D Y G +T + W E
Sbjct: 26 AELFVTRLEAVTS------NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLV 79
Query: 668 WEVYD---PCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSY 724
+ + P +TL + R S G++R+ L
Sbjct: 80 LPLAEEELPTATLTLTLRTCDRFS-----------RHSVAGELRLGLDGTSVPLGAAQWG 128
Query: 725 PL 726
L
Sbjct: 129 EL 130
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 3e-17
Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 15/129 (11%)
Query: 274 FTSTYDLVEQMSYLYVRVVKAKDLPP-SSITGSCDPYVEVKM-----GNYKGRTKHFEKR 327
F+ Y+ +Q L V V + L +PYV+ + K +T
Sbjct: 14 FSLKYE--QQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDT 71
Query: 328 MNPEWNQVFAF--SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLA 385
+NP +++ + + + L+ + GR+ +LG ++ D L
Sbjct: 72 VNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDS----WKLDKKL- 126
Query: 386 PQWYRLEDR 394
L +
Sbjct: 127 DHCLPLHGK 135
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 2e-12
Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 13/126 (10%)
Query: 2 KLVVEVVDAYDLMPKD-GEGSASPFAEVDFLNQLS-----KTKTIPKNLNPVWNQKLLFD 55
LVV V + + L D + ++P+ + L S KT +NP++++ L ++
Sbjct: 24 SLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYE 83
Query: 56 FDQTKSHNHLRIEVSIYHHERRPIPGRH-FLGRVRIPCSNLVRKGEEVYQRFPLEKKWFL 114
++ ++ S++HH R GR+ FLG I + + +++ PL K
Sbjct: 84 IPESLLAQR-TLQFSVWHHGRF---GRNTFLGEAEIQMDSW-KLDKKLDHCLPLHGK-IS 137
Query: 115 SSVKGE 120
+ +G
Sbjct: 138 AESEGH 143
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 4e-08
Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 19/124 (15%)
Query: 446 KLWY------LRVNVIEAQDIVPNDRNR-LPEGFVKVQV-----GNQVLKTKICPTPTTN 493
L Y L V+V E + D + +VK + KT I T N
Sbjct: 15 SLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRD-TVN 73
Query: 494 PLWNEDLVFV--AAEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRW 551
PL++E L + + + L +V ++ LG+ + + +LD + H
Sbjct: 74 PLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMD--SWKLDKKLDH--C 129
Query: 552 FNLE 555
L
Sbjct: 130 LPLH 133
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 20/125 (16%), Positives = 47/125 (37%), Gaps = 25/125 (20%)
Query: 612 GILEVGILGAQGLLPMKMKDGRGSTDAYC-------IAKYGQKWVRTRTILDTFNPKWNE 664
L V + L + + ++ Y ++ G++ +T DT NP ++E
Sbjct: 23 QSLVVHVKECHQLAYAD--EAKKRSNPYVKTYLLPDKSRQGKR--KTSIKRDTVNPLYDE 78
Query: 665 QYTWEVYD---PCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYT 721
+E+ + + V+ + G R++ +G+ I++ + + +
Sbjct: 79 TLRYEIPESLLAQRTLQFSVWHHGRFG-----------RNTFLGEAEIQMDSWKLDKKLD 127
Query: 722 HSYPL 726
H PL
Sbjct: 128 HCLPL 132
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 6e-17
Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKM-----GNYKGRTKHFEKR 327
+ + D Q L + +++ K L G+CDPYV++ + +T+
Sbjct: 17 QLRLSID--AQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDC 73
Query: 328 MNPEWNQVFAFS-KERIQSSMLEVFLKDKEMVGR-DDYLGRVAFDLNEVPTRVPPDSPLA 385
+P +++ F F +E L V + ++ R +G ++F + + T PD ++
Sbjct: 74 RDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLT---PDKEIS 130
Query: 386 PQWYRLEDR 394
WY L
Sbjct: 131 -GWYYLLGE 138
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 5e-15
Identities = 18/117 (15%), Positives = 51/117 (43%), Gaps = 13/117 (11%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFL-----NQLSKTKTIPKNLNPVWNQKLLFDF 56
L++ +++ L+ K G+ P+ ++ + + KT+T+P +P +++ F
Sbjct: 28 VLLLHIIEGKGLISKQP-GTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPV 86
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGRH--FLGRVRIPCSNLVRKGEEVYQRFPLEKK 111
+ R+ V++++ + R +G + +L+ +E+ + L +
Sbjct: 87 QEEDDQK--RLLVTVWNRASQ---SRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE 138
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 2e-11
Identities = 33/161 (20%), Positives = 65/161 (40%), Gaps = 21/161 (13%)
Query: 423 HSDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQV----- 477
H + V G G + + + L +++IE + ++ + +VK+ +
Sbjct: 6 HHHSHKVQGAGQLRLS----IDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDS 60
Query: 478 GNQVLKTKICPTPTTNPLWNEDLVF-VAAEPFEEQLFLTVEDRVHASK-DEVLGKISLPL 535
+ KT+ P +P ++E F V E +++L +TV +R S+ ++G +S +
Sbjct: 61 RLRHQKTQTVPD-CRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGV 119
Query: 536 HIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFSSRV 576
+ L S W+ L R K LK + R
Sbjct: 120 ---KSLLTPDKEISGWYYLL-----GEHLGRTKHLKVARRR 152
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 21/126 (16%), Positives = 48/126 (38%), Gaps = 26/126 (20%)
Query: 612 GILEVGILGAQGLLPMKMKDGRGSTDAYC-------IAKYGQKWVRTRTILDTFNPKWNE 664
+L + I+ +GL+ G+ D Y ++ + +T+T+ D +P ++E
Sbjct: 27 RVLLLHIIEGKGLISK----QPGTCDPYVKISLIPEDSRLRHQ--KTQTVPDCRDPAFHE 80
Query: 665 QYTWEV--YDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLE-AHRIYT 721
+ + V D + + V++ + IG + + +L + +
Sbjct: 81 HFFFPVQEEDDQKRLLVTVWNRASQSR----------QSGLIGCMSFGVKSLLTPDKEIS 130
Query: 722 HSYPLL 727
Y LL
Sbjct: 131 GWYYLL 136
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 6e-17
Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 19/133 (14%)
Query: 274 FTSTYDLVEQMSYLYVRVVKAKDLPPSS-------ITGSCDPYVEVKM---GNYKGRTKH 323
F++ YDL+ L VRV++A+DLPP +PYV++ + +T
Sbjct: 17 FSTQYDLLHNH--LTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGV 74
Query: 324 FEKRMNPEWNQVFAF--SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPD 381
K P + + + F Q L + + D + R +G+V+ L EV
Sbjct: 75 KRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDL----- 129
Query: 382 SPLAPQWYRLEDR 394
W L
Sbjct: 130 VKGGHWWKALIPS 142
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 8e-10
Identities = 19/105 (18%), Positives = 44/105 (41%), Gaps = 15/105 (14%)
Query: 2 KLVVEVVDAYDLMP-------KDGEGSASPFAEVDFLNQLS---KTKTIPKNLNPVWNQK 51
L V V++A DL P + ++P+ ++ L +T K PV+ ++
Sbjct: 27 HLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEER 86
Query: 52 LLFDFDQTKSHNHLRIEVSIYHHERRPIPGRH-FLGRVRIPCSNL 95
F+ ++ + +++ ++ RH +G+V +P +
Sbjct: 87 YTFEIPFLEAQRR-TLLLTVVDFDKF---SRHCVIGKVSVPLCEV 127
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 1e-09
Identities = 32/128 (25%), Positives = 46/128 (35%), Gaps = 23/128 (17%)
Query: 446 KLWY------LRVNVIEAQDIVP-------NDRNRLPEGFVKVQV---GNQVLKTKICPT 489
Y L V VIEA+D+ P +VK+ + +T +
Sbjct: 18 STQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRK 77
Query: 490 PTTNPLWNEDLVFV--AAEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPV 547
T P++ E F E L LTV D S+ V+GK+S+PL +D
Sbjct: 78 -TQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPL----CEVDLVKG 132
Query: 548 HSRWFNLE 555
W L
Sbjct: 133 GHWWKALI 140
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 8e-07
Identities = 23/125 (18%), Positives = 40/125 (32%), Gaps = 21/125 (16%)
Query: 612 GILEVGILGAQGLLPM----KMKDGRGSTDAYCIAKY---GQKWVRTRTILDTFNPKWNE 664
L V ++ A+ L P + ++ Y + +T T P + E
Sbjct: 26 NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85
Query: 665 QYTWEVYD---PCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYT 721
+YT+E+ + L V D R IGKV + L ++ +
Sbjct: 86 RYTFEIPFLEAQRRTLLLTVVDFDKFS-----------RHCVIGKVSVPLCEVDLVKGGH 134
Query: 722 HSYPL 726
L
Sbjct: 135 WWKAL 139
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 9e-17
Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 14/116 (12%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEV-----KMGNYKGRTKHFEKRMNPEWNQVFAF--- 338
L++ V+ KDL +PYV+ K +TK K NP +N++ +
Sbjct: 22 LFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGY 80
Query: 339 SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDR 394
SKE ++ L++ + E + + +LG + L + +WY+L
Sbjct: 81 SKETLRQRELQLSVLSAESLRENFFLGGITLPLKD----FNLSKET-VKWYQLTAA 131
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 9e-14
Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 10/100 (10%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLS-----KTKTIPKNLNPVWNQKLLFDF 56
L + V+ DL+ +DG +P+ + L KTK K NP +N+ L++
Sbjct: 21 TLFIMVMHIKDLVTEDGADP-NPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSG 79
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGRH-FLGRVRIPCSNL 95
++ +++S+ E + FLG + +P +
Sbjct: 80 YSKETLRQRELQLSVLSAESL---RENFFLGGITLPLKDF 116
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 6e-09
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 18/122 (14%)
Query: 446 KLWY----LRVNVIEAQDIVPNDRNRLPEGFVKVQV-----GNQVLKTKICPTPTTNPLW 496
+ Y L + V+ +D+V D P +VK + KTKI T NP +
Sbjct: 14 SVSYRNGTLFIMVMHIKDLVTEDGAD-PNPYVKTYLLPDTHKTSKRKTKISRK-TRNPTF 71
Query: 497 NEDLVF--VAAEPFEEQ-LFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFN 553
NE LV+ + E ++ L L+V ++ LG I+LPL K + +W+
Sbjct: 72 NEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPL----KDFNLSKETVKWYQ 127
Query: 554 LE 555
L
Sbjct: 128 LT 129
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 28/127 (22%)
Query: 612 GILEVGILGAQGLLPMKMKDGRGSTDAYC-------IAKYGQKWVRTRTILDTFNPKWNE 664
G L + ++ + L+ DG + Y K ++ +T+ T NP +NE
Sbjct: 20 GTLFIMVMHIKDLVTE---DGADP-NPYVKTYLLPDTHKTSKR--KTKISRKTRNPTFNE 73
Query: 665 QYTWEVYDPCTVIT----LGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIY 720
+ Y T+ L V L + +G + + L +
Sbjct: 74 MLVYSGYSKETLRQRELQLSVLSAESLR-----------ENFFLGGITLPLKDFNLSKET 122
Query: 721 THSYPLL 727
Y L
Sbjct: 123 VKWYQLT 129
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 2e-16
Identities = 36/132 (27%), Positives = 54/132 (40%), Gaps = 17/132 (12%)
Query: 274 FTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEV-----KMGNYKGRTKHFEKRM 328
T + Q + L V V ++L S GS DPYV + K + + +T +K +
Sbjct: 15 LTIRHS--SQRNKLIVVVHACRNLIAFSEDGS-DPYVRMYLLPDKRRSGRRKTHVSKKTL 71
Query: 329 NPEWNQVFAF--SKERIQSSMLEVFLKDKEMVGRDD--YLGRVAFDLNEVPTRVPPDSPL 384
NP ++Q F F S +Q L+V +K+ D LG+V L
Sbjct: 72 NPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKG----- 126
Query: 385 APQWYRLEDRRG 396
QWY L + G
Sbjct: 127 WTQWYDLTEDSG 138
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 3e-13
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 7/99 (7%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFL-----NQLSKTKTIPKNLNPVWNQKLLFDF 56
KL+V V +L+ +GS P+ + L + KT K LNPV++Q F
Sbjct: 25 KLIVVVHACRNLIAFSEDGS-DPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSV 83
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNL 95
+ ++V++ + + LG+V + ++
Sbjct: 84 SLPEVQRR-TLDVAVKNSGGFLSKDKGLLGKVLVALASE 121
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 6e-08
Identities = 19/128 (14%), Positives = 48/128 (37%), Gaps = 25/128 (19%)
Query: 446 KLWY------LRVNVIEAQDIVPNDRNRLPEGFVKVQV-----GNQVLKTKICPTPTTNP 494
+ + L V V ++++ + + +V++ + + KT + T NP
Sbjct: 16 TIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKK-TLNP 73
Query: 495 LWNEDLVFVAAEPFEE----QLFLTV--EDRVHASKDEVLGKISLPLHIFEKRLDHRPVH 548
++++ F E L + V + +LGK+ + L +
Sbjct: 74 VFDQSFDFSV--SLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVAL----ASEELAKGW 127
Query: 549 SRWFNLEK 556
++W++L +
Sbjct: 128 TQWYDLTE 135
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 5e-06
Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 25/126 (19%)
Query: 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCI-------AKYGQKWVRTRTILDTFNPKWNE 664
L V + + L+ GS D Y + G++ +T T NP +++
Sbjct: 24 NKLIVVVHACRNLIAF---SEDGS-DPYVRMYLLPDKRRSGRR--KTHVSKKTLNPVFDQ 77
Query: 665 QYTWEVYD---PCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYT 721
+ + V + + V ++ +K +GKV + L++ E + +T
Sbjct: 78 SFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKG---------LLGKVLVALASEELAKGWT 128
Query: 722 HSYPLL 727
Y L
Sbjct: 129 QWYDLT 134
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 2e-14
Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 13/122 (10%)
Query: 280 LVEQMSYLYVRVVKAKDLPPSSIT-GSCDPYVEVKMGNYKGR-----TKHFEKRMNPEWN 333
+ ++ L V V++A+ L + + PYV+V + T+ K ++P +
Sbjct: 25 MEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQ 84
Query: 334 QVFAFSKERIQSSMLEVFLK-DKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLE 392
Q F E Q +L+V + D + ++G L E + S + WY+L
Sbjct: 85 QSLVF-DESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEE----LDLSSMV-IGWYKLF 138
Query: 393 DR 394
Sbjct: 139 PP 140
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 1e-10
Identities = 34/147 (23%), Positives = 56/147 (38%), Gaps = 17/147 (11%)
Query: 2 KLVVEVVDAYDLMPKDGEGSAS-PFAEVDFLNQLS-----KTKTIPKNLNPVWNQKLLFD 55
+L VEV+ A L K G S P+ +V L + KT+ K L+P++ Q L+FD
Sbjct: 31 QLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFD 90
Query: 56 -FDQTKSHNHLRIEVSIYHHERRPIPGRH-FLGRVRIPCSNLVRKGEEVYQRFPL-EKKW 112
Q K ++V ++ R F+G +I L V + L
Sbjct: 91 ESPQGK-----VLQVIVWGDYGR--MDHKCFMGVAQILLEEL-DLSSMVIGWYKLFPPSS 142
Query: 113 FLSSVKGEVGLKIYISPQSETTQPPTS 139
+ + + S ++ PP
Sbjct: 143 LVDPTLAPLTRRASQSSLESSSGPPCI 169
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 1e-08
Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 17/114 (14%)
Query: 450 LRVNVIEAQDIVPND-RNRLPEGFVKVQV-----GNQVLKTKICPTPTTNPLWNEDLVFV 503
L V VI A+ + P +VKV + KT+I T +PL+ + LVF
Sbjct: 32 LEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARK-TLDPLYQQSLVF- 89
Query: 504 AAEPFEEQLFLTV---EDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNL 554
P + L + V R+ +G + L + LD + W+ L
Sbjct: 90 DESPQGKVLQVIVWGDYGRM--DHKCFMGVAQILL----EELDLSSMVIGWYKL 137
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 5e-08
Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 19/147 (12%)
Query: 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAK--YGQKWV---RTRTILDTFNPKWNEQY 666
G LEV ++ A+ L + + Y + +TR T +P + +
Sbjct: 30 GQLEVEVIRARSLTQKP--GSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSL 87
Query: 667 TWEVYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPL 726
++ V+ + V+ + +G +I L L+ + Y L
Sbjct: 88 VFDESPQGKVLQVIVWGDYGRMD----------HKCFMGVAQILLEELDLSSMVIGWYKL 137
Query: 727 LVLHPHGVKKMGELQLAIRFTIFSLAS 753
P + L R + SL S
Sbjct: 138 --FPPSSLVDPTLAPLTRRASQSSLES 162
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 75.3 bits (184), Expect = 9e-14
Identities = 73/618 (11%), Positives = 167/618 (27%), Gaps = 187/618 (30%)
Query: 28 VDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRI-----EVSIYHHERRPIPGR 82
+DF + + + K++ V+ + +FD + + E+ + + G
Sbjct: 7 MDF--ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 83 HFLGRVRIPCSNLVRKGEEVYQRF---PLEK--KWFLSSVKGEVGLKIYISPQSETTQPP 137
L L+ K EE+ Q+F L K+ +S +K E P T
Sbjct: 65 LRL----FWT--LLSKQEEMVQKFVEEVLRINYKFLMSPIKTE-----QRQPSMMTR--- 110
Query: 138 TSSLPKPKSPKNTTNLDSKTFTALPKVEELAAVDAPKSLPEEEISRISLKEDIKEPAKVT 197
++ D++ F +SR+
Sbjct: 111 -----MYIEQRDRLYNDNQVFAKYN------------------VSRLQP----------- 136
Query: 198 VEPIQEFLKQQVVLQPGQSVEKQPQGVPFTMHSMNLQQGRPGDQ-------EEYNLKDTN 250
+++ L + L+P ++V + + G Y ++
Sbjct: 137 YLKLRQALLE---LRPAKNV---------LIDGV----LGSGKTWVALDVCLSYKVQCKM 180
Query: 251 PQLGERWPNGGGYGGRGWMSGERFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYV 310
+ W++ + S ++E + L ++ +
Sbjct: 181 D--------FKIF----WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 311 EVKMGNYKGRTKHFEKRMNPE--------WN-QVF-AFSKERIQSSMLEVFLKDKEMVGR 360
++ + + + N + + AF+ + +L + + K++
Sbjct: 229 SIQ----AELRRLLKSKPYENCLLVLLNVQNAKAWNAFN---LSCKIL-LTTRFKQVT-- 278
Query: 361 DDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGTQADEAFAE 420
D+L T + D L + +L ++ + + E
Sbjct: 279 -DFLS------AATTTHISLDHHSMT----LTPDEVKS------LLLKYLDCRPQDLPRE 321
Query: 421 AW--HSDASSVYGEGV--FNIRSKVYVSPKLWYLRVNVIEA--QDIVPND-RNR------ 467
+ S+ E + + L +IE+ + P + R
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT-TIIESSLNVLEPAEYRKMFDRLSV 380
Query: 468 LPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLT-VEDRVHASKDE 526
P I PT + +W + + + + + K
Sbjct: 381 FPPS------------AHI-PTILLSLIWFDV------IKSDVMVVVNKLHKYSLVEKQP 421
Query: 527 VLGKISLP---LHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFSSRVHLRVCLE 583
IS+P L + K + +H ++ + F S + L+
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRS----------IVDHYNIPK-TFDSDDLIPPYLD 470
Query: 584 G------GYHVLDESTMY 595
G+H L
Sbjct: 471 QYFYSHIGHH-LKNIEHP 487
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 2e-07
Identities = 85/623 (13%), Positives = 180/623 (28%), Gaps = 188/623 (30%)
Query: 497 NEDLVFVAAEPFEEQL-FLTVEDRVHA--SKDEVLGKISLPLHIFEKRLDHRPVHSR--- 550
+D++ V + F + V+D + SK+E+ HI +
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID-------HIIM--SKDAVSGTLRLF 68
Query: 551 WFNLEK-------FGFGAIEADRRKELKF-SSRVHLRVCLEGGYHVLDESTMYIS--DQR 600
W L K F +E R KF S + + + MYI D+
Sbjct: 69 WTLLSKQEEMVQKF----VEEVLRINYKFLMSPIKTE-QRQPS----MMTRMYIEQRDRL 119
Query: 601 PTAKQLWKP-PVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ----KWV------ 649
Q++ V L+ L + L ++++ + + G K
Sbjct: 120 YNDNQVFAKYNVSRLQP-YLKLRQAL-LELRPAKN------VLIDGVLGSGKTWVALDVC 171
Query: 650 RTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCH---------------LGGGEKQN 694
+ + + + + W + L NC+ +
Sbjct: 172 LSYKVQCKMD---FKIF-W--------LNLK---NCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 695 GSSAVRDS-RIGKVRIRLSTLEAHRIYTHSYPLLVL----HPHGVKKMGELQ---LAI-R 745
+ RI ++ L L + Y + LLVL + L L R
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENC--LLVLLNVQNAKAWNAF-NLSCKILLTTR 273
Query: 746 FTIFSLASMIYVYGHPLLPKMHYLHPFTVNQ------------VDNLRHQAMNIVAVRLG 793
F + H L H+ T ++ +L + +
Sbjct: 274 FKQVTDFLSAATTTHISL--DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN----- 326
Query: 794 RAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRVMSL--LSGMISVS----------RWF 841
P R ++ + W + ++ ++ L+ +I S + F
Sbjct: 327 ----PRRLSIIAESIRDGLATW-------DNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 842 TDICNWRNPVTAVL---VHI--LFLILIWY------PELILPTVFLYMFLIGLWNYRFRP 890
+ +V HI + L LIW+ +++ + Y L+
Sbjct: 376 DRL--------SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTI 426
Query: 891 R-HPPHMDTKLSWAE--AVHPDELDEEFDTFPTSKTHDIVRIRYDRLRSVAGRIQTVVG- 946
+++ K+ A+H + + ++ T + D++ D + +G
Sbjct: 427 SIPSIYLELKVKLENEYALH-RSIVDHYNIPKTFDSDDLIPPYLD------QYFYSHIGH 479
Query: 947 --DIATQGERFQSL----LSWRDPRATALFILFSLCAAMVLYTTPFKVVALLAGL-YYLR 999
ER L +R F+ + + ++ L L +Y
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFR-------FLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 1000 H-----PRFRSKLPSVPSNFFKR 1017
+ P++ + ++ +F +
Sbjct: 533 YICDNDPKYERLVNAI-LDFLPK 554
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 4e-05
Identities = 68/411 (16%), Positives = 125/411 (30%), Gaps = 116/411 (28%)
Query: 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLN--QLSKTKTIPKNLNPVWNQKLLFDFDQ-- 58
+ ++V +Y + K F ++ +LN + +T+ + L QKLL+ D
Sbjct: 166 VALDVCLSYKVQCK------MDF-KIFWLNLKNCNSPETVLEML-----QKLLYQIDPNW 213
Query: 59 -TKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSV 117
++S + I++ I+ + R L LV L +
Sbjct: 214 TSRSDHSSNIKLRIHSIQAEL---RRLLKSKPYENCLLV-----------LLNVQNAKAW 259
Query: 118 KG-EVGLKIYISPQSETTQPP--TSSLPKPKSPKNTTNLDSKTFTALPKVEELAA--VD- 171
+ KI + TT+ T L + + + S T T +V+ L +D
Sbjct: 260 NAFNLSCKILL-----TTRFKQVTDFLSAATTTHISLDHHSMTLT-PDEVKSLLLKYLDC 313
Query: 172 APKSLPEEEIS----RISL-KEDIKEPA-------KVTVEPIQEFLKQQV-VLQPGQSVE 218
P+ LP E ++ R+S+ E I++ V + + ++ + VL+P E
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA---E 370
Query: 219 KQ---------PQGVPFTMHSMNL--QQGRPGDQEEYNLKDTNPQLGERWPNGGGYGGRG 267
+ P ++L D K L E+ P
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 268 WMSGERFTSTYD------LVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRT 321
+ + +V+ Y + + DL P + D Y ++ G
Sbjct: 431 IYLELKVKLENEYALHRSIVDH--YNIPKTFDSDDLIPPYL----DQYFY----SHIGH- 479
Query: 322 KHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLN 372
H LK+ E R V D
Sbjct: 480 -H----------------------------LKNIEHPERMTLFRMVFLDFR 501
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 68.8 bits (167), Expect = 5e-12
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 2/90 (2%)
Query: 283 QMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFS-KE 341
+++L V +A+ L T + D Y++V G + RT NP W F
Sbjct: 392 GLAHLVVSNFRAEHLW-GDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVL 450
Query: 342 RIQSSMLEVFLKDKEMVGRDDYLGRVAFDL 371
L V + D + DD LG
Sbjct: 451 LSTGGPLRVQVWDADYGWDDDLLGSCDRSP 480
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 61.5 bits (148), Expect = 9e-10
Identities = 22/110 (20%), Positives = 34/110 (30%), Gaps = 10/110 (9%)
Query: 1 MKLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTK 60
LVV A L + + +V F Q +T + N NP W K+ F+
Sbjct: 394 AHLVVSNFRAEHLWGDYTTAT-DAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLS 452
Query: 61 SHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEK 110
+ LR++V + + LG G L
Sbjct: 453 TGGPLRVQV--WDADY--GWDDDLLGSCDRS----PHSG-FHEVTCELNH 493
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 60.7 bits (146), Expect = 1e-09
Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 11/123 (8%)
Query: 435 FNIRSKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNP 494
+ L +L V+ A+ + + + ++KV G Q +T + NP
Sbjct: 381 VTNQDCCPRQRGLAHLVVSNFRAEHLWGDYTTA-TDAYLKVFFGGQEFRTGVVWN-NNNP 438
Query: 495 LWNEDLVF-VAAEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFN 553
W + + F L + V D + D++LG H H
Sbjct: 439 RWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSP--------HSGFHEVTCE 490
Query: 554 LEK 556
L
Sbjct: 491 LNH 493
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 47.6 bits (112), Expect = 2e-05
Identities = 27/170 (15%), Positives = 48/170 (28%), Gaps = 29/170 (17%)
Query: 571 KFSSRVHLRVCLEGGYHVLDESTMYISDQRPTAKQLWKP----PVGILEVGILGAQGLLP 626
+ + G H + Q + L V A+ L
Sbjct: 349 SRARWQNCSRPCRSGQHKSSHDSCQCECQDSKVTNQDCCPRQRGLAHLVVSNFRAEHL-- 406
Query: 627 MKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYD--PCTVITLGVFDN 684
D +TDAY +G + RT + + NP+W ++ +E + + V+D
Sbjct: 407 --WGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWD- 463
Query: 685 CHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGV 734
G D +G + + + L HG
Sbjct: 464 -------ADYGW---DDDLLGSCDRSPHS----GFHEVTCEL----NHGR 495
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 8e-10
Identities = 32/115 (27%), Positives = 54/115 (46%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSS 346
L V V++A +L G +PY E+ MG+ T+ + +NP+WN F + +
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQD 448
Query: 347 MLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVR 401
+L + L D++ DD+LGR + ++ T P+ + E GE VR
Sbjct: 449 VLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVR 503
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 8e-07
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 15/129 (11%)
Query: 1 MKLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLF---DFD 57
+L+V V++A +L G ++P+ E+ +Q T+TI LNP WN F D
Sbjct: 387 GRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLY 446
Query: 58 QTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSV 117
Q + ++++ +R FLGR IP + + + E + P+ ++ L V
Sbjct: 447 QD------VLCLTLF--DRDQFSPDDFLGRTEIPVAKIRTEQE---SKGPMTRRLLLHEV 495
Query: 118 -KGEVGLKI 125
GEV ++
Sbjct: 496 PTGEVWVRF 504
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 9e-04
Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 436 NIRSKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPL 495
+++ + + L V+VIEA ++ N + ++ +G+Q T+ T NP
Sbjct: 375 AYQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQ-DTLNPK 433
Query: 496 WNEDLVFVAAEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHR-PVHSR 550
WN + F + +++ L LT+ DR S D+ LG+ +P+ + + P+ R
Sbjct: 434 WNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRR 489
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 4e-09
Identities = 15/95 (15%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Query: 283 QMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNP-EWNQVFAFSKE 341
M+ L V + +L G D +V ++ E + ++++ F +
Sbjct: 20 HMA-LIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVA 73
Query: 342 R--IQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEV 374
++ +LE+ + + V + +G L +V
Sbjct: 74 SSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKV 108
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 1e-07
Identities = 16/100 (16%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 1 MKLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPV-WNQKLLFDFDQT 59
M L+V + +L G A A+V F Q ++ + + +++ + +
Sbjct: 21 MALIVHLKTVSEL-----RGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASS 75
Query: 60 KSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKG 99
N +E+ I+++ + + +G R+ +V +
Sbjct: 76 IDRNE-VLEIQIFNYSK--VFSNKLIGTFRMVLQKVVEEN 112
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 56.5 bits (135), Expect = 3e-08
Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 12/118 (10%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKM-GNYKGRTKHFEKRM---NPEWNQVFAFSKER 342
L + +++A++LPP Y E+ + RT + W + F F+
Sbjct: 13 LKLWIIEARELPP-----KKRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLP 67
Query: 343 IQSSMLEVFLKD---KEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGE 397
++ +D K + Y+G V + + R + G
Sbjct: 68 AVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGG 125
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 46.5 bits (109), Expect = 3e-05
Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 11/121 (9%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV-GNQVLKTKICP--TPTTNPLWNEDLVFVAAE 506
L++ +IEA+++ P R + ++ + +T P W E F
Sbjct: 13 LKLWIIEARELPPKKRY-----YCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLP 67
Query: 507 PFEE---QLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIE 563
L+ + + K +G +++P+ R + G G +
Sbjct: 68 AVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMG 127
Query: 564 A 564
+
Sbjct: 128 S 128
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 45.0 bits (105), Expect = 1e-04
Identities = 29/200 (14%), Positives = 54/200 (27%), Gaps = 25/200 (12%)
Query: 614 LEVGILGAQGLLPMKMKDGRGSTDAYC-IAKYGQKWVRTRT---ILDTFNPKWNEQYTWE 669
L++ I+ A+ L P K YC + + RT + W E + +
Sbjct: 13 LKLWIIEARELPPKK--------RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFN 64
Query: 670 VYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVL 729
+ L ++ + + + +G V + ++TL YP+ +
Sbjct: 65 NLPAVRALRLHLYRDSDKKRKKD-------KAGYVGLVTVPVATLAGRHFTEQWYPVTLP 117
Query: 730 HPHGVKKMGELQLAIRFTIFSLASMIYVYGHPLLPKMHY-----LHPFTVNQVDNLRHQA 784
G S + K Y L +
Sbjct: 118 TGSGGSGGMGSGGGGGSGGGSGGKGKGGCP-AVRLKARYQTMSILPMELYKEFAEYVTNH 176
Query: 785 MNIVAVRLGRAEPPLRKEVV 804
++ L A KE V
Sbjct: 177 YRMLCAVLEPALNVKGKEEV 196
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} Length = 138 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 4e-04
Identities = 19/138 (13%), Positives = 45/138 (32%), Gaps = 18/138 (13%)
Query: 286 YLYVRVVKAKDLP-PSSITGSCDPYVEVKM-----GNYKGRTKHFEKRMNPEWNQVFAFS 339
+L + + S + +PY V + + M P W+ F
Sbjct: 11 FLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDS--TFD 68
Query: 340 KERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGK 399
+ ++++ +K K D + +L + R ++ W L+ +G+
Sbjct: 69 AHINKGRVMQIIVKGKN----VDLISETTVELYSLAERCRKNNGKTEIWLELKP---QGR 121
Query: 400 VRGQTMLAIWMGTQADEA 417
+ M A + + +
Sbjct: 122 ML---MNARYFLEMSGPS 136
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1026 | ||||
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 4e-23 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 7e-16 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 2e-11 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 1e-07 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 1e-20 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 1e-10 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 2e-08 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 4e-07 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 5e-20 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 3e-12 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 3e-10 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 1e-06 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 6e-20 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 5e-13 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 2e-12 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 1e-11 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 2e-19 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 2e-10 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 7e-09 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 2e-07 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 2e-18 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 5e-16 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 1e-13 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 3e-12 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 2e-18 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 3e-11 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 4e-11 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 6e-10 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 2e-18 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 1e-16 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 3e-12 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 1e-11 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 7e-18 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 6e-12 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 1e-10 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 2e-08 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 7e-18 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 4e-10 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 2e-08 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 2e-04 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 3e-17 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 7e-10 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 2e-08 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 2e-16 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 1e-07 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 4e-06 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 3e-04 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 3e-15 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 1e-10 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 3e-09 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 8e-05 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 3e-15 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 9e-08 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 1e-07 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 7e-14 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 1e-09 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 1e-07 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 7e-07 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 9e-14 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 9e-10 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 2e-08 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 7e-08 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 5e-13 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 5e-12 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 4e-07 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 2e-05 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 5e-12 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 1e-05 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 2e-05 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 2e-11 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 1e-04 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 2e-04 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 4e-05 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 2e-04 |
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.7 bits (232), Expect = 4e-23
Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 8/128 (6%)
Query: 281 VEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSK 340
V+ + L V+V+KA DL + +G DP+ +++GN + +T K +NPEWN+VF F
Sbjct: 2 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 61
Query: 341 ERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKV 400
+ I + EV + D++ D+LG+VA L + P Y L+++ E
Sbjct: 62 KDIHDVL-EVTVFDEDGDKPPDFLGKVAIPLLSIRDG-------QPNCYVLKNKDLEQAF 113
Query: 401 RGQTMLAI 408
+G L +
Sbjct: 114 KGVIYLEM 121
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.9 bits (178), Expect = 7e-16
Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 17/138 (12%)
Query: 609 PPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTW 668
VGIL+V +L A LL D G +D +C+ + G ++T T+ NP+WN+ +T+
Sbjct: 3 KDVGILQVKVLKAADLLAA---DFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTF 59
Query: 669 EVYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLV 728
+ D V+ + VFD +GKV I L ++ + + Y L
Sbjct: 60 PIKDIHDVLEVTVFDEDGD-----------KPPDFLGKVAIPLLSIRDGQ--PNCYVLKN 106
Query: 729 LHPHGVKKMGELQLAIRF 746
K G + L +
Sbjct: 107 KDLEQAFK-GVIYLEMDL 123
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.8 bits (144), Expect = 2e-11
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 9/126 (7%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKS 61
L V+V+ A DL+ D G + PF ++ N +T T+ KNLNP WN+ F
Sbjct: 7 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKV----FTFPIK 62
Query: 62 HNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEV 121
H +EV+++ + FLG+V IP ++ R G+ + L+ K + KG +
Sbjct: 63 DIHDVLEVTVFDEDG--DKPPDFLGKVAIPLLSI-RDGQP--NCYVLKNKDLEQAFKGVI 117
Query: 122 GLKIYI 127
L++ +
Sbjct: 118 YLEMDL 123
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.0 bits (116), Expect = 1e-07
Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 449 YLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPF 508
L+V V++A D++ D + + F +++GN L+T NP WN+ F +
Sbjct: 7 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKN-LNPEWNKVFTFPIKDIH 65
Query: 509 EEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRK 568
+ +TV D + LGK+++PL R + L+ ++
Sbjct: 66 DVL-EVTVFDEDGDKPPDFLGKVAIPLL------SIRDGQPNCYVLK---------NKDL 109
Query: 569 ELKFSSRVHLRV 580
E F ++L +
Sbjct: 110 EQAFKGVIYLEM 121
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 86.3 bits (213), Expect = 1e-20
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 11/121 (9%)
Query: 284 MSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERI 343
MS L V V KAK + YV +K+ N K T + P W Q F F R+
Sbjct: 1 MSLLCVGVKKAKFDGA---QEKFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINRL 56
Query: 344 QSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDR--RGEGKVR 401
+ V + +K ++ D +G V L + + +W L+ + + ++
Sbjct: 57 DLGLT-VEVWNKGLI-WDTMVGTVWIPLRTIRQ---SNEEGPGEWLTLDSQAIMADSEIC 111
Query: 402 G 402
G
Sbjct: 112 G 112
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.2 bits (140), Expect = 1e-10
Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 9/135 (6%)
Query: 449 YLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPF 508
L V V +A+ ++ +V ++V N T + P W +D +F
Sbjct: 3 LLCVGVKKAKFDGAQEKFNT---YVTLKVQNVKSTTIAV--RGSQPSWEQDFMFEINRLD 57
Query: 509 EEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRK 568
+ V ++ D ++G + +PL R + W L+ A
Sbjct: 58 LGLT-VEVWNKGL-IWDTMVGTVWIPLR--TIRQSNEEGPGEWLTLDSQAIMADSEICGT 113
Query: 569 ELKFSSRVHLRVCLE 583
+ R+ L E
Sbjct: 114 KDPTFHRILLDAHFE 128
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 51.7 bits (123), Expect = 2e-08
Identities = 21/138 (15%), Positives = 40/138 (28%), Gaps = 24/138 (17%)
Query: 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVY 671
+L VG+ A+ + Y K T + P W + + +E+
Sbjct: 2 SLLCVGVKKAKFDGAQ------EKFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEIN 54
Query: 672 DPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEA--HRIYTHSYPLLVL 729
+T+ V++ + D+ +G V I L T+ L
Sbjct: 55 RLDLGLTVEVWNKGL------------IWDTMVGTVWIPLRTIRQSNEEGPGEWLT---L 99
Query: 730 HPHGVKKMGELQLAIRFT 747
+ E+ T
Sbjct: 100 DSQAIMADSEICGTKDPT 117
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.8 bits (113), Expect = 4e-07
Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 12/110 (10%)
Query: 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSH 62
L V V A ++ + + + N S T + + P W Q +F+ +
Sbjct: 4 LCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEIN----R 55
Query: 63 NHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQR-FPLEKK 111
L + V +++ +G V IP + + EE L+ +
Sbjct: 56 LDLGLTVEVWNKGL---IWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQ 102
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 85.1 bits (210), Expect = 5e-20
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 16/122 (13%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAF--S 339
L V V+KA+ LP S ++G DPYV+V + + K +T + N +N++F F
Sbjct: 17 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 76
Query: 340 KERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVP--------PDSPLAPQWYRL 391
E ++ +E + D E R++ +GR+ + P +A +W+ L
Sbjct: 77 CESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIA-KWHML 135
Query: 392 ED 393
D
Sbjct: 136 CD 137
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 62.8 bits (152), Expect = 3e-12
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 22/137 (16%)
Query: 438 RSKVYVSPKLWY------LRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTP- 490
R ++ VS L Y L V V++A+ + +D + L + +VKV + + + T
Sbjct: 1 RGELLVS--LCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHV 58
Query: 491 ---TTNPLWNEDLVF--VAAEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDH- 544
T N ++NE VF E + V D S++EV+G++ L H
Sbjct: 59 KKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHW 118
Query: 545 -------RPVHSRWFNL 554
R ++W L
Sbjct: 119 KEICDFPRRQIAKWHML 135
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 57.0 bits (137), Expect = 3e-10
Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQL-----SKTKTIPKNLNPVWNQKLLFDF 56
L V V+ A L D G + P+ +V+ + KT N V+N+ +FD
Sbjct: 16 TLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDI 75
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNL 95
+E + ER +GR+ + +
Sbjct: 76 PCESLEEI-SVEFLVLDSER--GSRNEVIGRLVLGATAE 111
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.6 bits (110), Expect = 1e-06
Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 24/127 (18%)
Query: 609 PPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKW-----VRTRTILDTFNPKWN 663
L V +L A+ L D G +D Y +T T N +N
Sbjct: 12 STTNTLTVVVLKARHLPKS---DVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFN 68
Query: 664 EQYTWEVYDP---CTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIY 720
E + +++ + V D+ R+ IG++ + + +
Sbjct: 69 ELFVFDIPCESLEEISVEFLVLDSERGS-----------RNEVIGRLVLGATAEGSG--G 115
Query: 721 THSYPLL 727
H +
Sbjct: 116 GHWKEIC 122
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 84.7 bits (209), Expect = 6e-20
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 13/119 (10%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKG-----RTKHFEKRMNPEWNQVFAFS-K 340
L V V AK+L P G DPYV++K+ +TK + +NPEWN+ F F K
Sbjct: 17 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 76
Query: 341 ERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGK 399
E + L V + D ++ R+D++G ++F ++E+ W++L + EG+
Sbjct: 77 ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG------VDGWFKLLSQE-EGE 128
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 64.7 bits (157), Expect = 5e-13
Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 22/123 (17%)
Query: 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKY-----GQKWVRTRTILDTFNPKWNEQY 666
+L V + A+ L+PM D G +D Y K + +T+TI + NP+WNE +
Sbjct: 15 EVLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETF 71
Query: 667 TWEVYDP--CTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSY 724
+++ + +++ ++D R+ +G + +S L+ + +
Sbjct: 72 RFQLKESDKDRRLSVEIWDWDLTS-----------RNDFMGSLSFGISELQKAGV-DGWF 119
Query: 725 PLL 727
LL
Sbjct: 120 KLL 122
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 63.6 bits (154), Expect = 2e-12
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 438 RSKVYVSPKLW--YLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTP----T 491
R ++Y+ + L V V +A+++VP D N L + +VK+++ T +
Sbjct: 3 RGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCS 62
Query: 492 TNPLWNEDLVFVAAEPFEEQ-LFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSR 550
NP WNE F E +++ L + + D S+++ +G +S + L V
Sbjct: 63 LNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGI----SELQKAGV-DG 117
Query: 551 WFNLE 555
WF L
Sbjct: 118 WFKLL 122
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 60.9 bits (147), Expect = 1e-11
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFL-----NQLSKTKTIPKNLNPVWNQKLLFDF 56
L+V V DA +L+P D G + P+ ++ + KTKTI +LNP WN+ F F
Sbjct: 16 VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNET--FRF 73
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKK 111
+S R+ V I+ + F+G + S L + G + F L +
Sbjct: 74 QLKESDKDRRLSVEIWDWDL--TSRNDFMGSLSFGISELQKAGVD--GWFKLLSQ 124
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 83.4 bits (205), Expect = 2e-19
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 22/132 (16%)
Query: 280 LVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKM--------------GNYKGRTKHFE 325
+ + L + +++A++L P G DP+V+V + YK RTK+ +
Sbjct: 13 INYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ 72
Query: 326 KRMNPEWNQVFAF---SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDS 382
K +NPEWNQ + S E++ LEV + D + +D+LG V DL+
Sbjct: 73 KSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDN--- 129
Query: 383 PLAPQWYRLEDR 394
P+WY L+++
Sbjct: 130 --TPRWYPLKEQ 139
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.0 bits (139), Expect = 2e-10
Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFL--------------NQLSKTKTIPKNLNPV 47
L++ ++ A +L+P+D G + PF +V L +TK + K+LNP
Sbjct: 19 NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPE 78
Query: 48 WNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFP 107
WNQ +++ + +EV+++ ++ FLG V I S+ + + +P
Sbjct: 79 WNQTVIYKSISMEQLMKKTLEVTVWDYD--RFSSNDFLGEVLIDLSST-SHLDNTPRWYP 135
Query: 108 LEKK 111
L+++
Sbjct: 136 LKEQ 139
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 53.4 bits (127), Expect = 7e-09
Identities = 26/123 (21%), Positives = 55/123 (44%), Gaps = 20/123 (16%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTP-------------TTNPLW 496
L +++++A+++VP D N + FVKV + + + + NP W
Sbjct: 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79
Query: 497 NEDLVFV---AAEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFN 553
N+ +++ + ++ L +TV D S ++ LG++ + L H RW+
Sbjct: 80 NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL----SSTSHLDNTPRWYP 135
Query: 554 LEK 556
L++
Sbjct: 136 LKE 138
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.1 bits (116), Expect = 2e-07
Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 32/134 (23%)
Query: 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCI--------------AKYGQKWVRTRTILDT 657
G L + IL A+ L+P D G +D + + RT+ + +
Sbjct: 18 GNLIIHILQARNLVPR---DNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKS 74
Query: 658 FNPKWNEQYTWEVYDPCT----VITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLST 713
NP+WN+ ++ + + V+D + +G+V I LS+
Sbjct: 75 LNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFS-----------SNDFLGEVLIDLSS 123
Query: 714 LEAHRIYTHSYPLL 727
YPL
Sbjct: 124 TSHLDNTPRWYPLK 137
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 80.6 bits (198), Expect = 2e-18
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 11/124 (8%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKR-MNPEWNQVFAFS-KERIQ 344
L V +V AK L + + DPYV++ ++ E PEWN+ F F+ E
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 345 SSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQT 404
++F DK++ DD +G L V + + P Y + + + +G+
Sbjct: 72 ELKAKIF--DKDVGTEDDAVGEATIPLEPVFV----EGSIPPTAYNVVK---DEEYKGEI 122
Query: 405 MLAI 408
+A+
Sbjct: 123 WVAL 126
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 73.6 bits (180), Expect = 5e-16
Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 18/141 (12%)
Query: 608 KPPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTIL-DTFNPKWNEQY 666
P G LEV ++ A+GL + D + D Y + ++ P+WNE +
Sbjct: 6 SGPHGTLEVVLVSAKGL---EDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETF 62
Query: 667 TWEVYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPL 726
+ V + T + +FD D +G+ I L + +
Sbjct: 63 IFTVSEGTTELKAKIFDKDVGT-----------EDDAVGEATIPLEPVFVEGSIPPTAYN 111
Query: 727 LVLHPHGVKKMGELQLAIRFT 747
+V + GE+ +A+ F
Sbjct: 112 VVKDE---EYKGEIWVALSFK 129
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 66.7 bits (162), Expect = 1e-13
Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
Query: 439 SKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNE 498
S P L V ++ A+ + D + +V++ Q K+ + T P WNE
Sbjct: 2 SSGSSGPH-GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNE 60
Query: 499 DLVFVAAEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEK 556
+F +E +L + D+ ++D+ +G+ ++PL E + +N+ K
Sbjct: 61 TFIFTVSEG-TTELKAKIFDKDVGTEDDAVGEATIPL---EPVFVEGSIPPTAYNVVK 114
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 62.8 bits (152), Expect = 3e-12
Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 12/131 (9%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTI-PKNLNPVWNQKLLFDFDQTK 60
L V +V A L D + P+ ++ Q K+ P WN+ +F
Sbjct: 11 TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVS--- 67
Query: 61 SHNHLRIEVSIYHHERRPIPGRH-FLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKG 119
++ I+ + +G IP + +G + + K KG
Sbjct: 68 -EGTTELKAKIFDKDVG---TEDDAVGEATIPLEPVFVEGSIPPTAYNVVKD---EEYKG 120
Query: 120 EVGLKIYISPQ 130
E+ + + P
Sbjct: 121 EIWVALSFKPS 131
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 81.0 bits (199), Expect = 2e-18
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 12/125 (9%)
Query: 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKM---GNYKGRTKHFEKRMN 329
+++ YD L V +++A +LP + G+ DPYV+V + K TK K +N
Sbjct: 24 QYSLDYDFQNNQ--LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 81
Query: 330 PEWNQVFAF--SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQ 387
P +N+ F F + L + + D + + D +G +N V + +
Sbjct: 82 PVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF-----GHVTEE 136
Query: 388 WYRLE 392
W L+
Sbjct: 137 WRDLQ 141
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 60.2 bits (145), Expect = 3e-11
Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 20/125 (16%)
Query: 609 PPVGILEVGILGAQGLLPMKMKDGRGSTDAYC---IAKYGQKWVRTRTILDTFNPKWNEQ 665
L VGI+ A L + D G++D Y + +K T+ T NP +NEQ
Sbjct: 31 FQNNQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQ 87
Query: 666 YTWEVYDPC---TVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTH 722
+T++V + + V+D + IG+ ++ ++T++ +
Sbjct: 88 FTFKVPYSELGGKTLVMAVYDFDRFS-----------KHDIIGEFKVPMNTVDFGHVTEE 136
Query: 723 SYPLL 727
L
Sbjct: 137 WRDLQ 141
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.8 bits (144), Expect = 4e-11
Identities = 24/111 (21%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLN---QLSKTKTIPKNLNPVWNQKLLFDFDQ 58
+L+V ++ A +L D G++ P+ +V L + +TK K LNPV+N++ F
Sbjct: 35 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 94
Query: 59 TKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLE 109
++ + +++Y +R +G ++P + + G + L+
Sbjct: 95 SELGGK-TLVMAVYDFDR--FSKHDIIGEFKVPMNTV-DFGHVTEEWRDLQ 141
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 56.3 bits (135), Expect = 6e-10
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV---GNQVLKTKICPTPTTNPLWNEDLVF--VA 504
L V +I+A ++ D + +VKV + + +TK+ NP++NE F
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKT-LNPVFNEQFTFKVPY 94
Query: 505 AEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLE 555
+E + L + V D SK +++G+ +P+ +D V W +L+
Sbjct: 95 SELGGKTLVMAVYDFDRFSKHDIIGEFKVPM----NTVDFGHVTEEWRDLQ 141
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.1 bits (197), Expect = 2e-18
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 18/130 (13%)
Query: 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKM-----GNYKGRTKHFEKR 327
+D V L V ++ AKDLP +PYV++ K RTK +K
Sbjct: 4 SIKLWFDKVGH--QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKT 61
Query: 328 MNPEWNQVFAF---SKERIQSSMLEVFLKDKEMVG--RDDYLGRVAFDLNEVPTRVPPDS 382
+ P+WNQ F + + + MLE+ L D+ V ++LG + +L
Sbjct: 62 LEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA------LL 115
Query: 383 PLAPQWYRLE 392
P WY+L+
Sbjct: 116 DDEPHWYKLQ 125
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.7 bits (183), Expect = 1e-16
Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFL-----NQLSKTKTIPKNLNPVWNQKLLFDF 56
+L+V ++ A DL ++ +P+ ++ FL +TKT+ K L P WNQ ++
Sbjct: 15 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSP 74
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLE 109
+ +E++++ R FLG + I + E + + L+
Sbjct: 75 VHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHW--YKLQ 125
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.4 bits (151), Expect = 3e-12
Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 22/126 (17%)
Query: 446 KLWY------LRVNVIEAQDIVPNDRNRLPEGFVKVQV-----GNQVLKTKICPTPTTNP 494
KLW+ L V ++ A+D+ + R +VK+ +TK T P
Sbjct: 6 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVK-KTLEP 64
Query: 495 LWNEDLVFVAAEPFEEQ---LFLTV--EDRVHASKDEVLGKISLPLHIFEKRLDHRPVHS 549
WN+ ++ E + L +T+ + RV + E LG+I + L +
Sbjct: 65 KWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIEL----ETALLDDE-P 119
Query: 550 RWFNLE 555
W+ L+
Sbjct: 120 HWYKLQ 125
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.5 bits (146), Expect = 1e-11
Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 22/127 (17%)
Query: 609 PPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIA-----KYGQKWVRTRTILDTFNPKWN 663
L V ILGA+ L + + Y + + RT+T+ T PKWN
Sbjct: 11 KVGHQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWN 67
Query: 664 EQYTWEVYDPCT----VITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRI 719
+ + + ++ + ++D + +G++ I L T
Sbjct: 68 QTFIYSPVHRREFRERMLEITLWDQARVREE---------ESEFLGEILIELETALLDDE 118
Query: 720 YTHSYPL 726
H Y L
Sbjct: 119 -PHWYKL 124
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.6 bits (193), Expect = 7e-18
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 13/121 (10%)
Query: 287 LYVRVVKAKDLPPSS---ITGSCDPYVEVKMG---NYKGRTKHFEKRMNPEWNQVFAFSK 340
V V++A + + + + DPYVE+ + + + RT+HF +NP WN+ F F
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 341 ERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKV 400
+ Q ++LE+ L D D+ LG F ++ + + + E +
Sbjct: 65 DPNQENVLEITLMDANY-VMDETLGTATFTVSSMKVGEKKE-----VPFIFNQ-VTEMVL 117
Query: 401 R 401
Sbjct: 118 E 118
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.7 bits (149), Expect = 6e-12
Identities = 23/141 (16%), Positives = 45/141 (31%), Gaps = 24/141 (17%)
Query: 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG---QKWVRTRTILDTFNPKWNEQYTWEV 670
V +L A + D + D Y RTR + NP WNE + + +
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 671 YDPCT-VITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVL 729
V+ + + D + V D +G +S+++ +
Sbjct: 65 DPNQENVLEITLMDANY------------VMDETLGTATFTVSSMKVGEKKEVPFIF--- 109
Query: 730 HPHGVKKMGELQLAIRFTIFS 750
++ E+ L + + S
Sbjct: 110 -----NQVTEMVLEMSLEVAS 125
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.2 bits (140), Expect = 1e-10
Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 10/119 (8%)
Query: 450 LRVNVIEAQDIVP---NDRNRLPEGFVKVQVGNQVLKTKICPTP--TTNPLWNEDLVFVA 504
V V+ A + D P+ +V++ + K NP+WNE F+
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 505 AEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIE 563
E L +T+ D + DE LG + + + F + +E
Sbjct: 65 DPNQENVLEITLMDANY-VMDETLGTATFTV----SSMKVGEKKEVPFIFNQVTEMVLE 118
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.6 bits (123), Expect = 2e-08
Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 16/133 (12%)
Query: 2 KLVVEVVDAYDLMP---KDGEGSASPFAEVDFLNQLSKTKTI---PKNLNPVWNQKLLFD 55
K V V+ A + D + P+ E+ K ++NPVWN+ F
Sbjct: 4 KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI 63
Query: 56 FDQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLS 115
D + + +E+++ LG S++ + GE+ F + +
Sbjct: 64 LDPNQENV---LEITLMDANYV---MDETLGTATFTVSSM-KVGEKKEVPFIFNQV---T 113
Query: 116 SVKGEVGLKIYIS 128
+ E+ L++ S
Sbjct: 114 EMVLEMSLEVASS 126
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 79.5 bits (195), Expect = 7e-18
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 19/151 (12%)
Query: 261 GGYGGRGWMSGE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKG 319
GG GG G+ F+ Y L V +++AK+L + G DPYV++ +
Sbjct: 2 GGGGGILEKLGDICFSLRYV--PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGK 59
Query: 320 -----RTKHFEKRMNPEWNQVFAF--SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLN 372
+T + +NP +N+ F+F E+IQ + V + D + +G++D +G+V N
Sbjct: 60 RLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN 119
Query: 373 EVPTRV--------PPDSPLAPQWYRLEDRR 395
+ P P+A QW+ L+
Sbjct: 120 STGAELRHWSDMLANPRRPIA-QWHTLQVEE 149
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 57.5 bits (138), Expect = 4e-10
Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 20/144 (13%)
Query: 431 GEGVFNIRSKVYVS----PKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVGN-----QV 481
G G+ + S P L V ++EA+++ D L + +VK+ + +
Sbjct: 4 GGGILEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKK 63
Query: 482 LKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVE--DRVHASKDEVLGKISLPLHIFE 539
KT I T NP +NE F +++ + V D K++ +GK+ + +
Sbjct: 64 KKTTIKK-NTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTG 122
Query: 540 KRLDH--------RPVHSRWFNLE 555
L H R ++W L+
Sbjct: 123 AELRHWSDMLANPRRPIAQWHTLQ 146
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.5 bits (125), Expect = 2e-08
Identities = 19/99 (19%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLN-----QLSKTKTIPKNLNPVWNQKLLFDF 56
KL V +++A +L D G + P+ ++ + + KT LNP +N+ F+
Sbjct: 26 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 85
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNL 95
+ +++ V++ +++ I +G+V + ++
Sbjct: 86 PFEQIQ-KVQVVVTVLDYDK--IGKNDAIGKVFVGYNST 121
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.0 bits (95), Expect = 2e-04
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 18/112 (16%)
Query: 609 PPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ-----KWVRTRTILDTFNPKWN 663
P G L V IL A+ +K D G +D Y Q K +T +T NP +N
Sbjct: 22 PTAGKLTVVILEAKN---LKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYN 78
Query: 664 EQYTWEVYDP-CTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTL 714
E +++EV + + V + G ++ IGKV + ++
Sbjct: 79 ESFSFEVPFEQIQKVQVVVTVLDYDKIG---------KNDAIGKVFVGYNST 121
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.7 bits (188), Expect = 3e-17
Identities = 23/125 (18%), Positives = 40/125 (32%), Gaps = 2/125 (1%)
Query: 284 MSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERI 343
S L + V+ AK PYVEV + +T+ +P+W Q +
Sbjct: 5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPV 64
Query: 344 QSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQ 403
V+ + + D LG A D+ E +L + + G
Sbjct: 65 SKLHFRVW--SHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGD 122
Query: 404 TMLAI 408
+ +
Sbjct: 123 LSICL 127
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.9 bits (134), Expect = 7e-10
Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 16/133 (12%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKS 61
+L + V+ A K SP+ EV Q KT+ +P W Q L
Sbjct: 7 QLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIV----- 61
Query: 62 HNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVR----KGEEVYQRFPLEKKWFLSSV 117
++ ++ H+ + LG + ++ K EEV L +
Sbjct: 62 TPVSKLHFRVWSHQT--LKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTET 119
Query: 118 KGEV-----GLKI 125
G++ GL++
Sbjct: 120 IGDLSICLDGLQL 132
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.7 bits (123), Expect = 2e-08
Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 13/135 (9%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFE 509
L++ VI A+ P +V+V V Q KT+ C T +P W + L + +
Sbjct: 8 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCN-NTNSPKWKQPLTVIVTPVSK 66
Query: 510 EQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKE 569
+ + D +LG +L ++ K + + + L+ +
Sbjct: 67 LHFRVWSHQTL--KSDVLLGTAALDIYETLKSNNMK-LEEVVVTLQL---------GGDK 114
Query: 570 LKFSSRVHLRVCLEG 584
+ L +CL+G
Sbjct: 115 EPTETIGDLSICLDG 129
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 74.6 bits (182), Expect = 2e-16
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVE---VKMGNYKGRTKHFEKRMNPEWNQVFAF--SKE 341
L VR+++A DLP G DPYV+ + K +TK K +NP +N+ F F
Sbjct: 20 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 79
Query: 342 RIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLED 393
+ L + D + R D +G+V D PPD PL W + +
Sbjct: 80 ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDILE 128
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.6 bits (117), Expect = 1e-07
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV---GNQVLKTKICPTPTTNPLWNEDLVFV--A 504
L V +++A D+ D N + +VK+ + + +TK+ T NP++NE F
Sbjct: 20 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHR-KTLNPIFNETFQFSVPL 78
Query: 505 AEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFG 558
AE + +L +V D S+ +++G++ L + + P W ++ + G
Sbjct: 79 AELAQRKLHFSVYDFDRFSRHDLIGQVVLDNL--LELAEQPPDRPLWRDILEGG 130
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.9 bits (105), Expect = 4e-06
Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLS---KTKTIPKNLNPVWNQKLLFDFDQ 58
+LVV ++ A DL KD G + P+ ++ L +TK K LNP++N+ F
Sbjct: 19 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPL 78
Query: 59 TKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPC-SNLVRKGEEVYQRFPLEK 110
+ ++ S+Y +R +G+V + L + + + +
Sbjct: 79 AELAQR-KLHFSVYDFDR--FSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 128
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.9 bits (92), Expect = 3e-04
Identities = 22/124 (17%), Positives = 35/124 (28%), Gaps = 16/124 (12%)
Query: 609 PPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTW 668
L V IL A L + +K +T+ T NP +NE + +
Sbjct: 15 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQF 74
Query: 669 EVYDPC---TVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIY--THS 723
V + V+D R IG+V + A +
Sbjct: 75 SVPLAELAQRKLHFSVYDFDRFS-----------RHDLIGQVVLDNLLELAEQPPDRPLW 123
Query: 724 YPLL 727
+L
Sbjct: 124 RDIL 127
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 71.4 bits (174), Expect = 3e-15
Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 16/122 (13%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAF--S 339
L V +++ L G DP+V++ + K +T+ +K +NPE+N+ F +
Sbjct: 17 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 76
Query: 340 KERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVP--------PDSPLAPQWYRL 391
+ L++ + D ++ +DY+G ++ R+ D + +W++L
Sbjct: 77 HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIE-RWHQL 135
Query: 392 ED 393
++
Sbjct: 136 QN 137
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.3 bits (140), Expect = 1e-10
Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 18/136 (13%)
Query: 438 RSKVYVS----PKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTP--- 490
R K+ VS + L V +I + D N + FVK+ + + K T
Sbjct: 1 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK 60
Query: 491 -TTNPLWNEDLVF--VAAEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDH--- 544
T NP +NE+ + ++ ++ L ++V D ++ +G L + +RL H
Sbjct: 61 KTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYE 120
Query: 545 -----RPVHSRWFNLE 555
RW L+
Sbjct: 121 CLKNKDKKIERWHQLQ 136
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 54.5 bits (130), Expect = 3e-09
Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLN-----QLSKTKTIPKNLNPVWNQKLLFDF 56
L+V ++ L D G + PF ++ KT+ K LNP +N++ +D
Sbjct: 16 GLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDI 75
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKK 111
+ +++S++ ++ ++G ++ S GE + + K
Sbjct: 76 KHSDLAKK-SLDISVWDYDI--GKSNDYIGGCQLGISAK---GERLKHWYECLKN 124
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.4 bits (96), Expect = 8e-05
Identities = 24/129 (18%), Positives = 45/129 (34%), Gaps = 24/129 (18%)
Query: 607 WKPPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIA-----KYGQKWVRTRTILDTFNPK 661
+ G L VGI+ L M D G +D + + +T+ T NP+
Sbjct: 10 YSTQQGGLIVGIIRCVHLAAM---DANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPE 66
Query: 662 WNEQYTWEVYDP---CTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHR 718
+NE++ +++ + + V+D + IG ++ +S
Sbjct: 67 FNEEFFYDIKHSDLAKKSLDISVWDYDIGK-----------SNDYIGGCQLGISAKGERL 115
Query: 719 IYTHSYPLL 727
H Y L
Sbjct: 116 --KHWYECL 122
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 71.4 bits (174), Expect = 3e-15
Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 17/125 (13%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNY-----KGRTKHFEKRMNPEWNQVFAF--S 339
L V ++KA +L +TG DPYV+ + + K +T + +NP +N+ F +
Sbjct: 22 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 81
Query: 340 KERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRV---------PPDSPLAPQWYR 390
E +++ L + + D + +G ++ +G P P+ W++
Sbjct: 82 PESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVE-HWHQ 140
Query: 391 LEDRR 395
L + +
Sbjct: 141 LVEEK 145
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 50.2 bits (119), Expect = 9e-08
Identities = 29/125 (23%), Positives = 45/125 (36%), Gaps = 15/125 (12%)
Query: 445 PKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTP----TTNPLWNEDL 500
P L V +I+A ++ D + +VK + ++ + K T T NP +NE L
Sbjct: 17 PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEAL 76
Query: 501 VF--VAAEPFEEQLFLTVEDRVHASKDEVLGKISLPL---------HIFEKRLDHRPVHS 549
VF L + V D +EV+G + H E + R
Sbjct: 77 VFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVE 136
Query: 550 RWFNL 554
W L
Sbjct: 137 HWHQL 141
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.4 bits (117), Expect = 1e-07
Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLS-----KTKTIPKNLNPVWNQKLLFDF 56
L V ++ A +L D G + P+ + +++ KT LNP +N+ L+FD
Sbjct: 21 LLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDV 80
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEE 101
+S ++ + +++ ++ I +G R+ G E
Sbjct: 81 AP-ESVENVGLSIAVVDYDC--IGHNEVIGVCRVGPEAADPHGRE 122
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.4 bits (164), Expect = 7e-14
Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 15/131 (11%)
Query: 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITG-SCDPYVEVKM---GNYKGRTKHFEKRM 328
F+ Y+ + V + +A+ LP + DPY+++ + +K +T+ K +
Sbjct: 12 FFSLEYN--FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTL 69
Query: 329 NPEWNQVFAF---SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLA 385
+P +++ F F +IQ L + + RDD +G V L+ + +
Sbjct: 70 DPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI------ELSEG 123
Query: 386 PQWYRLEDRRG 396
E G
Sbjct: 124 KMLMNREIISG 134
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.5 bits (133), Expect = 1e-09
Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
Query: 2 KLVVEVVDAYDLMPKDGEGSAS-PFAEVDFL---NQLSKTKTIPKNLNPVWNQKLLFDFD 57
VV + +A L D + S P+ ++ L KT+ + K L+P +++ F
Sbjct: 23 AFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGI 82
Query: 58 QTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNL-VRKGEEVYQRFPLEKK 111
L + +I +R +G V IP S + + +G+ + R +
Sbjct: 83 PYTQIQELALHFTILSFDR--FSRDDIIGEVLIPLSGIELSEGKMLMNREIISGP 135
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (117), Expect = 1e-07
Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 20/114 (17%)
Query: 609 PPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKY---GQKWVRTRTILDTFNPKWNEQ 665
V I A+GL M + ++D Y + V+TR + T +P ++E
Sbjct: 19 FERKAFVVNIKEARGLPAMD--EQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDET 76
Query: 666 YTWEVYDP----CTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLE 715
+T+ + + RD IG+V I LS +E
Sbjct: 77 FTFYGIPYTQIQELALHFTILSFDRFS-----------RDDIIGEVLIPLSGIE 119
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.4 bits (112), Expect = 7e-07
Identities = 23/119 (19%), Positives = 50/119 (42%), Gaps = 12/119 (10%)
Query: 424 SDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPNDRNR-LPEGFVKVQV---GN 479
S SS G + + + + VN+ EA+ + D + ++K+ +
Sbjct: 2 SSGSSGLGT----LFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKK 57
Query: 480 QVLKTKICPTPTTNPLWNEDLVFV---AAEPFEEQLFLTVEDRVHASKDEVLGKISLPL 535
+KT++ +P ++E F + E L T+ S+D+++G++ +PL
Sbjct: 58 HKVKTRVLRKTL-DPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPL 115
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 67.2 bits (163), Expect = 9e-14
Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 18/134 (13%)
Query: 280 LVEQMSYLYVRVVKAKDLPPSSI-----------TGSCDPYVEVKMGNYK-GRTKHFEKR 327
+V L +++ +A L P++ T DPY+ + + + + G+T +K
Sbjct: 1 MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKT 60
Query: 328 MNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQ 387
+P W+ F + L VF +G DD++ E+ S
Sbjct: 61 NSPAWHDEFVTDVCNGRKIELAVFHDAP--IGYDDFVANCTIQFEELLQN---GSRHFED 115
Query: 388 WYRLEDRRGEGKVR 401
W LE G+ V
Sbjct: 116 WIDLEP-EGKVYVI 128
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 55.7 bits (133), Expect = 9e-10
Identities = 25/147 (17%), Positives = 49/147 (33%), Gaps = 31/147 (21%)
Query: 612 GILEVGILGAQGLLPMK--------MKDGRGSTDAYCIAKYG-QKWVRTRTILDTFNPKW 662
G+L++ I A L P + D Y + +T T T +P W
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65
Query: 663 NEQYTWEVYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAH--RIY 720
++++ +V + I L VF + +G + I+ L + R +
Sbjct: 66 HDEFVTDVCNGRK-IELAVFHDAPIGYDDFV-----------ANCTIQFEELLQNGSRHF 113
Query: 721 THSYPLLVLHPHGVKKMGELQLAIRFT 747
L + G++ + I +
Sbjct: 114 EDWIDL--------EPEGKVYVIIDLS 132
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 51.4 bits (122), Expect = 2e-08
Identities = 19/147 (12%), Positives = 49/147 (33%), Gaps = 31/147 (21%)
Query: 449 YLRVNVIEAQDIVPNDRNR-----------LPEGFVKVQVGNQVLKTKICPTPTTNPLWN 497
L++ + EA + P + L + ++ + V + + T +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 498 EDLVFVAAEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKF 557
++ V + +L + + + D+ + ++ + W +LE
Sbjct: 67 DEFVTDVCNGRKIELAVFHDAPI--GYDDFVANCTIQFEELLQN--GSRHFEDWIDLEPE 122
Query: 558 GFGAIEADRRKELKFSSRVHLRVCLEG 584
G +V++ + L G
Sbjct: 123 G----------------KVYVIIDLSG 133
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 50.3 bits (119), Expect = 7e-08
Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 27/143 (18%)
Query: 2 KLVVEVVDAYDLMPKD-----------GEGSASPFAEVDFLN-QLSKTKTIPKNLNPVWN 49
L +++ +A L P P+ ++ + ++ +T T K +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 50 QKLLFDFDQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQR-FPL 108
+ + D N +IE++++H I F+ I L++ G ++ L
Sbjct: 67 DEFVTDV-----CNGRKIELAVFHDAP--IGYDDFVANCTIQFEELLQNGSRHFEDWIDL 119
Query: 109 EKKWFLSSVKGEVGLKIYISPQS 131
E +G+V + I +S S
Sbjct: 120 EP-------EGKVYVIIDLSGSS 135
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 64.8 bits (157), Expect = 5e-13
Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 16/119 (13%)
Query: 287 LYVRVVKAKDLPP--SSITGSCDPYVEVKMGNYKGRTKHFEKRM------NPEWNQVFAF 338
L VR++ + LP + DP V V++ T + + NP W+ F F
Sbjct: 6 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65
Query: 339 SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGE 397
+++ ++D + ++D++G+ N + + L + G+
Sbjct: 66 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG--------YRHVHLLSKNGD 116
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 62.1 bits (150), Expect = 5e-12
Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 450 LRVNVIEAQDI--VPNDRNRLPEGFVKVQV-----GNQVLKTKICPTPTTNPLWNEDLVF 502
LRV +I Q + V ++N + + V V++ +T + NP W+ + F
Sbjct: 6 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65
Query: 503 VAAEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSR 550
P + VED +SK++ +G+ ++P + ++ H + S+
Sbjct: 66 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSK 113
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.8 bits (113), Expect = 4e-07
Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 24/128 (18%)
Query: 607 WKPPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKY-----GQKWVRTRTI-LDTFNP 660
W+P L V I+ Q L P K+ D I + +T I + FNP
Sbjct: 1 WRP--ERLRVRIISGQQL-PKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNP 57
Query: 661 KWNEQYTWEVYDPCT-VITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRI 719
+W+ ++ +EV P ++ V D ++ IG+ I ++ +
Sbjct: 58 RWDMEFEFEVTVPDLALVRFMVEDYDSSS-----------KNDFIGQSTIPWNS---LKQ 103
Query: 720 YTHSYPLL 727
LL
Sbjct: 104 GYRHVHLL 111
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.8 bits (100), Expect = 2e-05
Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 17/118 (14%)
Query: 2 KLVVEVVDAYDL--MPKDGEGSASPFAEVDFL-----NQLSKTKTIPKN-LNPVWNQKLL 53
+L V ++ L + K+ P V+ +T I N NP W+ +
Sbjct: 5 RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFE 64
Query: 54 FDFDQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKK 111
F+ + + + ++ F+G+ IP ++ Y+ L K
Sbjct: 65 FE---VTVPDLALVRFMVEDYD--SSSKNDFIGQSTIP----WNSLKQGYRHVHLLSK 113
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.2 bits (150), Expect = 5e-12
Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 16/128 (12%)
Query: 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKG----RTKHFEKRM 328
+ YD Q + L+V ++A G CD YV+ + N G +T ++++
Sbjct: 16 HYCLDYD--CQKAELFVTRLEAVTSNHD---GGCDCYVQGSVANRTGSVEAQTALKKRQL 70
Query: 329 NPEWNQVFAF--SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAP 386
+ W + ++E + ++ L + L+ + R G + L+ +
Sbjct: 71 HTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAA----- 125
Query: 387 QWYRLEDR 394
QW L+
Sbjct: 126 QWGELKTS 133
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.1 bits (103), Expect = 1e-05
Identities = 13/114 (11%), Positives = 34/114 (29%), Gaps = 11/114 (9%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLS----KTKTIPKNLNPVWNQKLLFDFD 57
+L V ++A + +G + + N+ +T + L+ W + L+
Sbjct: 27 ELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLA 83
Query: 58 QTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKK 111
+ + +++ G +R+ Q L+
Sbjct: 84 EEELPTA---TLTLTLRTCDRFSRHSVAGELRLGLDGT-SVPLGAAQWGELKTS 133
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (101), Expect = 2e-05
Identities = 20/125 (16%), Positives = 29/125 (23%), Gaps = 24/125 (19%)
Query: 609 PPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKY----GQKWVRTRTILDTFNPKWNE 664
L V L A + G D Y G +T + W E
Sbjct: 23 CQKAELFVTRLEAVTS------NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEE 76
Query: 665 QYTWEVY---DPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYT 721
+ P +TL + R S G++R+ L
Sbjct: 77 GLVLPLAEEELPTATLTLTLRTCDRFS-----------RHSVAGELRLGLDGTSVPLGAA 125
Query: 722 HSYPL 726
L
Sbjct: 126 QWGEL 130
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.8 bits (144), Expect = 2e-11
Identities = 19/116 (16%), Positives = 37/116 (31%), Gaps = 15/116 (12%)
Query: 292 VKAKDL-PPSSITGSCDPYVEVKMGNY-----KGRTKHFEKRMNPEWNQVFAFSKERIQS 345
+ +L + + P+ VKM + M PEW F +
Sbjct: 9 FNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRV 68
Query: 346 SMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVR 401
+ + M +D + V ++ + R ++ A W L+ + KV
Sbjct: 69 IQIVL------MRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQPQ---AKVL 115
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.5 bits (94), Expect = 1e-04
Identities = 9/123 (7%), Positives = 32/123 (26%), Gaps = 24/123 (19%)
Query: 629 MKDGRGSTDAYCIAKY-----GQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFD 683
++ ++ +C K + T P+W + + VI + +
Sbjct: 17 LQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHI-YEGRVIQIVLMR 75
Query: 684 NCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLA 743
+ +G + + + L + ++ +
Sbjct: 76 AAEDPMS----------EVTVGVSVLAERCKKNNGKAEFWLDL--------QPQAKVLMC 117
Query: 744 IRF 746
+++
Sbjct: 118 VQY 120
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.7 bits (92), Expect = 2e-04
Identities = 15/130 (11%), Positives = 36/130 (27%), Gaps = 21/130 (16%)
Query: 1 MKLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLS-----KTKTIPKNLNPVWNQKLLFD 55
+++ + L +D ++ PF V L+ + P W
Sbjct: 5 LRISFNSYELGSLQAEDD--ASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAH 62
Query: 56 FDQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLS 115
+ I++ + + V + S L E + + W
Sbjct: 63 -----IYEGRVIQIVLMRAA------EDPMSEVTVGVSVLA---ERCKKNNGKAEFWLDL 108
Query: 116 SVKGEVGLKI 125
+ +V + +
Sbjct: 109 QPQAKVLMCV 118
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (98), Expect = 4e-05
Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 26/123 (21%)
Query: 285 SYLYVRVVKAKDLPPSSITGSCDPYVEVKM------GNYKGRTKHFEKRM--NPEWNQ-- 334
+ L + V+ + L S+ YVEV++ + RTK NP W +
Sbjct: 1 TTLSITVISGQFLSERSV----RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEP 56
Query: 335 VFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDR 394
+ + L V + ++ + +LG +N + L
Sbjct: 57 FVFEKILMPELASLRVAVMEE----GNKFLGHRIIPINAL--------NSGYHHLCLHSE 104
Query: 395 RGE 397
Sbjct: 105 SNM 107
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (92), Expect = 2e-04
Identities = 18/117 (15%), Positives = 33/117 (28%), Gaps = 23/117 (19%)
Query: 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFL--------NQLSKTKTIPKNLNPVWNQKLLF 54
L + V+ L + + EV+ +K ++NPVW ++
Sbjct: 3 LSITVISGQFLSERS----VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58
Query: 55 DFDQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKK 111
+ V++ FLG IP + Y L +
Sbjct: 59 FEKILMPELAS-LRVAVMEEG------NKFLGHRIIP----INALNSGYHHLCLHSE 104
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1026 | |||
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.93 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.91 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.91 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.88 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.88 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.88 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.87 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.87 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.86 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.86 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.85 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.85 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.85 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.85 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.85 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.84 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.84 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.84 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.84 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.83 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.83 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.82 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.81 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.81 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.81 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.81 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.8 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.8 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.8 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.8 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.79 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.79 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.79 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.78 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.76 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.71 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.69 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.69 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.54 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.53 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 95.8 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 95.69 | |
| d2yrba1 | 142 | Fantom {Human (Homo sapiens) [TaxId: 9606]} | 87.93 |
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=9.5e-26 Score=162.80 Aligned_cols=123 Identities=28% Similarity=0.480 Sum_probs=104.9
Q ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEECCCCCCEEECEEEEEEECCCCEEEEEEEECCCCC
Q ss_conf 99608999999703897875589999768099999899999832213889962300889995279977999999599789
Q 001696 609 PPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLG 688 (1026)
Q Consensus 609 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~ 688 (1026)
.++|.|+|+|++|++|+.+ +..|.+||||++.+|++.++|+++++|.||.|||.|.|.+.++.+.|.|+|||++.++
T Consensus 3 ~~~G~L~V~v~~A~~L~~~---d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~ 79 (126)
T d2ep6a1 3 KDVGILQVKVLKAADLLAA---DFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDK 79 (126)
T ss_dssp CCSEEEEEEEEEEESCCCS---SSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTE
T ss_pred CCCEEEEEEEEEEECCCCC---CCCCCCCEEEEEECCCEEEEEEEECCCEEEEEEEEEEEEEECCCCEEEEEEEECCCCC
T ss_conf 8619999999982789887---8899969599997698588777407740578989999998436750089999936984
Q ss_pred CCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEEEEE
Q ss_conf 997568999989970099999766335895686559535508999754739999999966
Q 001696 689 GGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTI 748 (1026)
Q Consensus 689 ~~~~~~~~~~~~d~~iG~~~i~L~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 748 (1026)
+|++||++.|+|+++..+. .+||.|......+. ..|+|+|++.|.+
T Consensus 80 -----------~d~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~~-~~G~i~l~~~~i~ 125 (126)
T d2ep6a1 80 -----------PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQA-FKGVIYLEMDLIY 125 (126)
T ss_dssp -----------EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTSC-CSSEEEEEEEEEE
T ss_pred -----------CCCEEEEEEEEHHHCCCCC--CEEEECCCCCCCCC-EEEEEEEEEEEEE
T ss_conf -----------7625899999989988999--64998415489975-4299999999997
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.91 E-value=6e-24 Score=152.34 Aligned_cols=124 Identities=23% Similarity=0.326 Sum_probs=104.5
Q ss_pred CCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEC-CCCCCEEECEEEEEEECCCCEEEEEEEECCC
Q ss_conf 999608999999703897875589999768099999899999832213-8899623008899952799779999995997
Q 001696 608 KPPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTIL-DTFNPKWNEQYTWEVYDPCTVITLGVFDNCH 686 (1026)
Q Consensus 608 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~-~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~ 686 (1026)
..+.|.|+|+|++|++|+++ +..|++||||++.+++...+|++++ ++.||.|||.|.|.+.++...|.|+|||++.
T Consensus 6 ~~p~G~L~V~v~~a~~L~~~---d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~ 82 (136)
T d1wfja_ 6 SGPHGTLEVVLVSAKGLEDA---DFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDV 82 (136)
T ss_dssp CCCEEEEEEEEEEEEECSSC---CSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSS
T ss_pred CCCCEEEEEEEEEEECCCCC---CCCCCCCCCEEEEEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCEEEEEEEEECC
T ss_conf 89938999999995689898---889997932899994553788899668872887069999973831157999999569
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEECCCCC-CCCEEEEEEEEEECCCCCCCCCCEEEEEEEEEEC
Q ss_conf 89997568999989970099999766335-8956865595355089997547399999999662
Q 001696 687 LGGGEKQNGSSAVRDSRIGKVRIRLSTLE-AHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTIF 749 (1026)
Q Consensus 687 ~~~~~~~~~~~~~~d~~iG~~~i~L~~l~-~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 749 (1026)
++ +|++||.+.|+|.++. .+.....||+|.. ..+..|+|+|.+.|.+.
T Consensus 83 ~~-----------~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~----~~~~~G~i~l~l~~~p~ 131 (136)
T d1wfja_ 83 GT-----------EDDAVGEATIPLEPVFVEGSIPPTAYNVVK----DEEYKGEIWVALSFKPS 131 (136)
T ss_dssp CT-----------TTCCSEEEEEESHHHHHHSEEEEEEEEEEE----TTEEEEEEEEEEEEEEC
T ss_pred CC-----------CCCEEEEEEEEHHHHCCCCCCCCEEEEECC----CCCCCEEEEEEEEEEEC
T ss_conf 99-----------998899999993871126986737878647----99457899999999848
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=5.7e-24 Score=152.49 Aligned_cols=120 Identities=33% Similarity=0.558 Sum_probs=82.3
Q ss_pred CEEEEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEEEECCCCCCEEEEEEEEEECCCCCCEEEEEEEECCCCCCCC
Q ss_conf 21299999998416999999999996999999995557652249999839689999805789873999999689899985
Q 001696 283 QMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDD 362 (1026)
Q Consensus 283 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d~ 362 (1026)
+.|.|.|+|++|+||+.++..|.+||||++++++++++|++++++.||.|||+|.|.+.++. ..|.|+|||++.+++|+
T Consensus 4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~-~~L~i~V~d~~~~~~d~ 82 (126)
T d2ep6a1 4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIH-DVLEVTVFDEDGDKPPD 82 (126)
T ss_dssp CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTT-CEEEEEEEEEETTEEEE
T ss_pred CCEEEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEEEEECCCEEEEEEEEEEEEEECCC-CEEEEEEEECCCCCCCC
T ss_conf 61999999998278988788999695999976985887774077405789899999984367-50089999936984762
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEE
Q ss_conf 449999985425898999999989899921289997213459999995
Q 001696 363 YLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWM 410 (1026)
Q Consensus 363 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 410 (1026)
+||++.+++.++..+. .+|+.|......++..|+|.+++.+
T Consensus 83 ~lG~~~i~l~~l~~~~-------~~~~~l~~~~~~~~~~G~i~l~~~~ 123 (126)
T d2ep6a1 83 FLGKVAIPLLSIRDGQ-------PNCYVLKNKDLEQAFKGVIYLEMDL 123 (126)
T ss_dssp ECCBCEEEGGGCCSSC-------CEECCCBCSCTTSCCSSEEEEEEEE
T ss_pred EEEEEEEEHHHCCCCC-------CEEEECCCCCCCCCEEEEEEEEEEE
T ss_conf 5899999989988999-------6499841548997542999999999
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.88 E-value=7.8e-23 Score=145.89 Aligned_cols=123 Identities=24% Similarity=0.376 Sum_probs=85.9
Q ss_pred CEEEEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEEEEC-CCCCCEEEEEEEEEECCCCCCEEEEEEEECCCCCCC
Q ss_conf 2129999999841699999999999699999999555765224-999983968999980578987399999968989998
Q 001696 283 QMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFE-KRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRD 361 (1026)
Q Consensus 283 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d 361 (1026)
+.|.|.|+|++|++|+.++..|.+||||+++++++..+|++++ ++.||.|||+|.|.+.+. ...|.|+|||++.+++|
T Consensus 8 p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~-~~~L~v~V~d~d~~~~d 86 (136)
T d1wfja_ 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFDKDVGTED 86 (136)
T ss_dssp CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESS-CCEEEEEECCSSSCTTT
T ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCEEEEEEEEEEECCC-CCEEEEEEEEECCCCCC
T ss_conf 93899999999568989888999793289999455378889966887288706999997383-11579999995699999
Q ss_pred CEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCC
Q ss_conf 5449999985425898999999989899921289997213459999995356
Q 001696 362 DYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGTQ 413 (1026)
Q Consensus 362 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~ 413 (1026)
++||.+.|+|.++..... ....|+.+... ++..|+|.+.+.|.+.
T Consensus 87 ~~iG~~~i~L~~l~~~~~----~~~~~~~l~~~---~~~~G~i~l~l~~~p~ 131 (136)
T d1wfja_ 87 DAVGEATIPLEPVFVEGS----IPPTAYNVVKD---EEYKGEIWVALSFKPS 131 (136)
T ss_dssp CCSEEEEEESHHHHHHSE----EEEEEEEEEET---TEEEEEEEEEEEEEEC
T ss_pred CEEEEEEEEHHHHCCCCC----CCCEEEEECCC---CCCCEEEEEEEEEEEC
T ss_conf 889999999387112698----67378786479---9457899999999848
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.88 E-value=1.1e-21 Score=139.19 Aligned_cols=119 Identities=23% Similarity=0.332 Sum_probs=97.5
Q ss_pred EEEEEEEEEECCCCCCCC--------CCCCCCCCCEEEEEECCEE-EEEEEECCCCCCEEECEEEEEEECCCCEEEEEEE
Q ss_conf 089999997038978755--------8999976809999989999-9832213889962300889995279977999999
Q 001696 612 GILEVGILGAQGLLPMKM--------KDGRGSTDAYCIAKYGQKW-VRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVF 682 (1026)
Q Consensus 612 g~l~v~v~~a~~L~~~~~--------~~~~g~~dpyv~v~~g~~~-~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~ 682 (1026)
|.|+|+|++|++|++++. ....+.+||||++.+|+.. .+|+++.++.||.|||.|.|++.+. ..|.|+||
T Consensus 6 G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~~-~~l~i~V~ 84 (136)
T d1gmia_ 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELAVF 84 (136)
T ss_dssp EEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEEEE
T ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECC-CCEEEEEE
T ss_conf 99999999947998653444333245678887583799991898676705884988953963799999327-84599999
Q ss_pred ECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCC--CEEEEEEEEEECCCCCCCCCCEEEEEEEEEECC
Q ss_conf 59978999756899998997009999976633589--568655953550899975473999999996621
Q 001696 683 DNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAH--RIYTHSYPLLVLHPHGVKKMGELQLAIRFTIFS 750 (1026)
Q Consensus 683 d~~~~~~~~~~~~~~~~~d~~iG~~~i~L~~l~~~--~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~ 750 (1026)
|++.++ +|++||.+.|+|+++..+ .....||+|. ..|+|++.+.|++.+
T Consensus 85 d~~~~~-----------~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------p~G~v~l~v~~~~~~ 135 (136)
T d1gmia_ 85 HDAPIG-----------YDDFVANCTIQFEELLQNGSRHFEDWIDLE--------PEGKVYVIIDLSGSS 135 (136)
T ss_dssp ECCSSS-----------SCEEEEEEEEEHHHHTSTTCSEEEEEEECB--------SSCEEEEEEEEEEEE
T ss_pred EECCCC-----------CCEEEEEEEEEHHHHHHCCCCCEEEEEECC--------CCCEEEEEEEEEECC
T ss_conf 966898-----------740578999997995316896224899677--------882999999999079
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2.5e-22 Score=142.92 Aligned_cols=118 Identities=18% Similarity=0.255 Sum_probs=95.6
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECC---EEEEEEEECCCCCCEEECEEEEEEECC-CCEEEEEEEECCCC
Q ss_conf 08999999703897875589999768099999899---999832213889962300889995279-97799999959978
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ---KWVRTRTILDTFNPKWNEQYTWEVYDP-CTVITLGVFDNCHL 687 (1026)
Q Consensus 612 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~---~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~v~d~~~~ 687 (1026)
+.|+|+|++|++|+.....|..|++||||++.+++ ++.+|+++.++.||.|||.|.|.+.++ ...|.|+|||++..
T Consensus 3 ~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~~ 82 (126)
T d1rlwa_ 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV 82 (126)
T ss_dssp EEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSS
T ss_pred CEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCEECEEEEECCCCCCCCCEEEEEEECCCC
T ss_conf 18999999860898863666688978189999977346116764047886501011450104584127179999987997
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEEEE
Q ss_conf 999756899998997009999976633589568655953550899975473999999996
Q 001696 688 GGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFT 747 (1026)
Q Consensus 688 ~~~~~~~~~~~~~d~~iG~~~i~L~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 747 (1026)
+|++||.+.|+|++|..+.....||+|. +. ..|+|++.+++.
T Consensus 83 ------------~d~~lG~~~i~L~~l~~~~~~~~~~~L~-----~~-~~g~i~~~l~~~ 124 (126)
T d1rlwa_ 83 ------------MDETLGTATFTVSSMKVGEKKEVPFIFN-----QV-TEMVLEMSLEVA 124 (126)
T ss_dssp ------------CCEEEEEEEEEGGGSCTTCEEEEEEEET-----TT-EEEEEEEEEECC
T ss_pred ------------CCCEEEEEEEEHHHCCCCCEEEEEEECC-----CC-CEEEEEEEEEEE
T ss_conf ------------8974899999988865998388999834-----89-808999999997
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.87 E-value=1.1e-21 Score=139.23 Aligned_cols=91 Identities=34% Similarity=0.621 Sum_probs=38.9
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCEEEEEE-----CCEEEEEEEECCCCCCEEEEEEEEEECCCC-CCEEEEEEEECCCC
Q ss_conf 299999998416999999999996999999-----995557652249999839689999805789-87399999968989
Q 001696 285 SYLYVRVVKAKDLPPSSITGSCDPYVEVKM-----GNYKGRTKHFEKRMNPEWNQVFAFSKERIQ-SSMLEVFLKDKEMV 358 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~-----~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~L~i~V~d~~~~ 358 (1026)
+.|.|+|++|+||+.++..|.+||||++++ +..+++|++++++.||.|||.|.|.+.... ...|.|+|||++.+
T Consensus 15 ~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~ 94 (132)
T d1a25a_ 15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT 94 (132)
T ss_dssp SEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSS
T ss_pred CEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCC
T ss_conf 99999998554998878998969089999826788866408841658899845549999957645697876997806778
Q ss_pred CCCCEEEEEEEECCCCC
Q ss_conf 99854499999854258
Q 001696 359 GRDDYLGRVAFDLNEVP 375 (1026)
Q Consensus 359 ~~d~~lG~~~i~l~~l~ 375 (1026)
++|++||.+.|++.++.
T Consensus 95 ~~d~~iG~~~i~l~~l~ 111 (132)
T d1a25a_ 95 SRNDFMGSLSFGISELQ 111 (132)
T ss_dssp SCCEEEEEEEEEHHHHT
T ss_pred CCCCEEEEEEEEHHHCC
T ss_conf 88967699999689948
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.87 E-value=2e-21 Score=137.75 Aligned_cols=116 Identities=28% Similarity=0.509 Sum_probs=83.1
Q ss_pred CC-EEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEE---CCEEEEEEEECCCCCCEEEEEEEEEEC--CCC
Q ss_conf 45-057642455621299999998416999999999996999999---995557652249999839689999805--789
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKM---GNYKGRTKHFEKRMNPEWNQVFAFSKE--RIQ 344 (1026)
Q Consensus 271 ~~-~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~---~~~~~kT~v~~~t~nP~wne~f~f~v~--~~~ 344 (1026)
|+ ++++.|+. ..+.|.|+|++|+||+.++..|.+||||++++ +.++++|++++++.||.|||+|.|.+. +..
T Consensus 21 G~l~~sl~y~~--~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~ 98 (143)
T d1rsya_ 21 GKLQYSLDYDF--QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELG 98 (143)
T ss_dssp CEEEEEEEEET--TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHT
T ss_pred EEEEEEEEEEC--CCCEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEEEEEEEEEEEECCC
T ss_conf 38999999959--9999999999750899877899978079999858997168888865666831223169999853158
Q ss_pred CCEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 8739999996898999854499999854258989999999898999212
Q 001696 345 SSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLED 393 (1026)
Q Consensus 345 ~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 393 (1026)
...|.|+|||++.++++++||.+.|+|.++....... +||+|+.
T Consensus 99 ~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~-----~W~~L~s 142 (143)
T d1rsya_ 99 GKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTE-----EWRDLQS 142 (143)
T ss_dssp TCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEE-----EEEECBC
T ss_pred CCEEEEEEEECCCCCCCCEEEEEEEECHHCCCCCCCC-----CEEECCC
T ss_conf 8469999998389888967999999820334999970-----2883888
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.86 E-value=3.4e-21 Score=136.38 Aligned_cols=118 Identities=31% Similarity=0.500 Sum_probs=88.4
Q ss_pred CC-EEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEC---CEEEEEEEECCCCCCEEEEEEEEEEC--CCC
Q ss_conf 45-0576424556212999999984169999999999969999999---95557652249999839689999805--789
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMG---NYKGRTKHFEKRMNPEWNQVFAFSKE--RIQ 344 (1026)
Q Consensus 271 ~~-~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~---~~~~kT~v~~~t~nP~wne~f~f~v~--~~~ 344 (1026)
|+ ++++.|+. ..+.|.|+|++|+||+.++..|.+||||++++. .++++|++++++.||.|||+|.|.+. +..
T Consensus 5 G~l~~sl~y~~--~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~ 82 (130)
T d1dqva1 5 GRISFALRYLY--GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELA 82 (130)
T ss_dssp CEEEEEEECCS--SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGS
T ss_pred EEEEEEEEEEC--CCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEECEEECCCCCEEEEEEEEEEECHHHCC
T ss_conf 89999999979--9999999998604896416899756678999716787518660476877706526788988457718
Q ss_pred CCEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 8739999996898999854499999854258989999999898999212
Q 001696 345 SSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLED 393 (1026)
Q Consensus 345 ~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 393 (1026)
...|.|+|||++.+++|++||++.|++.......+.+ .+.|++|.+
T Consensus 83 ~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~---~~~W~~L~~ 128 (130)
T d1dqva1 83 QRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPD---RPLWRDILE 128 (130)
T ss_dssp SCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSS---CCCCEECBC
T ss_pred CCEEEEEEEECCCCCCCCEEEEEEECCHHHHHCCCCC---CCEEEECCC
T ss_conf 9869999987688999866899998761542027988---868982216
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.86 E-value=5e-21 Score=135.39 Aligned_cols=102 Identities=25% Similarity=0.383 Sum_probs=79.2
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEE---CCEEEEEEEECCCCCCEEECEEEEEEECC---CCEEEEEEEECC
Q ss_conf 089999997038978755899997680999998---99999832213889962300889995279---977999999599
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKY---GQKWVRTRTILDTFNPKWNEQYTWEVYDP---CTVITLGVFDNC 685 (1026)
Q Consensus 612 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~---g~~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~v~d~~ 685 (1026)
+.|.|.|++|+||+++ +..|.+||||++.+ +...++|++++++.||.|||.|.|.+... ...|.|.|||++
T Consensus 34 ~~L~V~V~~a~~L~~~---~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d 110 (143)
T d1rsya_ 34 NQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFD 110 (143)
T ss_dssp TEEEEEEEEEESCCCC---STTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECC
T ss_pred CEEEEEEEECCCCCCC---CCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEEEEEEEEEEEECCCCCEEEEEEEECC
T ss_conf 9999999975089987---7899978079999858997168888865666831223169999853158846999999838
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEE
Q ss_conf 789997568999989970099999766335895686559535
Q 001696 686 HLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 686 ~~~~~~~~~~~~~~~d~~iG~~~i~L~~l~~~~~~~~~~~L~ 727 (1026)
.++ ++++||.+.|+|+++..+....+||+|.
T Consensus 111 ~~~-----------~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 141 (143)
T d1rsya_ 111 RFS-----------KHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp SSS-----------CCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred CCC-----------CCCEEEEEEEECHHCCCCCCCCCEEECC
T ss_conf 988-----------8967999999820334999970288388
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.85 E-value=1.5e-20 Score=132.58 Aligned_cols=119 Identities=22% Similarity=0.295 Sum_probs=74.2
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEE-----CCEEEEEEEECC-CCCCEEECEEEEEEECC-CCEEEEEEEEC
Q ss_conf 089999997038978755899997680999998-----999998322138-89962300889995279-97799999959
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKY-----GQKWVRTRTILD-TFNPKWNEQYTWEVYDP-CTVITLGVFDN 684 (1026)
Q Consensus 612 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-----g~~~~~T~~~~~-t~~P~wne~~~~~v~~~-~~~l~i~v~d~ 684 (1026)
..|+|+|++|++|+.++. +..|++||||++.+ +....+|+++++ ++||.|||+|.|.+..+ ...|.|+|||+
T Consensus 4 ~~l~V~Vi~a~~L~~~~~-~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~ 82 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNK-NKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDY 82 (131)
T ss_dssp EEEEEEEEEEESCCCCC------CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEEC
T ss_pred EEEEEEEEEEECCCCCCC-CCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCEEEEEEEEEEECCHHCEEEEEEEEE
T ss_conf 799999999229997789-8899818699999966788857878888966657965977999997763232589999980
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEEE
Q ss_conf 97899975689999899700999997663358956865595355089997547399999999
Q 001696 685 CHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRF 746 (1026)
Q Consensus 685 ~~~~~~~~~~~~~~~~d~~iG~~~i~L~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 746 (1026)
|..+ +|++||.+.|+|+.+..| .+|++|.+..+... ..++|.+.+.+
T Consensus 83 d~~~-----------~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~~~-~~~~L~v~i~~ 129 (131)
T d1qasa2 83 DSSS-----------KNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQH-PSATLFVKISI 129 (131)
T ss_dssp CTTT-----------CCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEE-EEEEEEEEEEE
T ss_pred CCCC-----------CCCEEEEEEEEEECCCCC---CEEEECCCCCCCCC-CCCEEEEEEEE
T ss_conf 6888-----------986889999997626787---78998989995998-87789999999
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.6e-20 Score=132.52 Aligned_cols=88 Identities=16% Similarity=0.206 Sum_probs=49.5
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEECCCCCCEEECEEEEEEECCCCEEEEEEEECCCCCCCC
Q ss_conf 08999999703897875589999768099999899999832213889962300889995279977999999599789997
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGE 691 (1026)
Q Consensus 612 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 691 (1026)
+.|+|+|++|++|+.. +..+++||||++.+|++.++|++++++.||.|||.|.|++.. .+.|.|+|||++.++
T Consensus 6 ~~L~v~v~~A~~~~~~---~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~-~~~l~~~V~d~d~~~--- 78 (133)
T d2nq3a1 6 SQLQITVISAKLKENK---KNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLK--- 78 (133)
T ss_dssp EEEEEEEEEEEECCCC-----CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSS---
T ss_pred EEEEEEEEEEECCCCC---CCCCCCCEEEEEEECCEEEEEEEEEECCCEEECCEEEEEEEE-CCEEEEEEEECCCCC---
T ss_conf 3899999993999767---788996959999999847843799703627876567999980-220699999826888---
Q ss_pred CCCCCCCCCCCEEEEEEEECCCC
Q ss_conf 56899998997009999976633
Q 001696 692 KQNGSSAVRDSRIGKVRIRLSTL 714 (1026)
Q Consensus 692 ~~~~~~~~~d~~iG~~~i~L~~l 714 (1026)
+|++||++.|+|+++
T Consensus 79 --------~d~~iG~~~i~L~~l 93 (133)
T d2nq3a1 79 --------SDVLLGTAALDIYET 93 (133)
T ss_dssp --------CCEEEEEEEEEHHHH
T ss_pred --------CCCEEEEEEEEHHHH
T ss_conf --------994689999997993
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.85 E-value=6.7e-22 Score=140.45 Aligned_cols=116 Identities=34% Similarity=0.655 Sum_probs=95.7
Q ss_pred CC-EEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEECC--------------EEEEEEEECCCCCCEEEEE
Q ss_conf 45-05764245562129999999841699999999999699999999--------------5557652249999839689
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN--------------YKGRTKHFEKRMNPEWNQV 335 (1026)
Q Consensus 271 ~~-~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~--------------~~~kT~v~~~t~nP~wne~ 335 (1026)
|+ ++++.|+ .+.|.|+|++|+||+.++..|.+||||++++.+ ++.+|++++++.||.|||.
T Consensus 7 G~l~lsl~y~----~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~ 82 (142)
T d1rh8a_ 7 GEIQLQINYD----LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQT 82 (142)
T ss_dssp CEEEEEEEEE----TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEE
T ss_pred EEEEEEEEEE----CCEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEE
T ss_conf 3999999995----999999999738998867899979478999946766310002578835043467838888346789
Q ss_pred EEEEEC---CCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 999805---789873999999689899985449999985425898999999989899921289
Q 001696 336 FAFSKE---RIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRR 395 (1026)
Q Consensus 336 f~f~v~---~~~~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 395 (1026)
|.|... ++....|.|+|||++.+++|++||++.|+|.++...... ..||+|.+..
T Consensus 83 f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~-----~~W~~L~~~~ 140 (142)
T d1rh8a_ 83 VIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNT-----PRWYPLKEQT 140 (142)
T ss_dssp EEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTC-----CEEEECBCCC
T ss_pred EEEEEECCCCCCCCEEEEEEEEECCCCCCEEEEEEEEEHHHCCCCCCC-----EEEEECCCCC
T ss_conf 987522333467787999999705899981468999986775788986-----0999793867
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.1e-20 Score=133.49 Aligned_cols=122 Identities=20% Similarity=0.207 Sum_probs=61.2
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEEEECCCCCCEEEEEEEEEECCCCCCEEEEEEEECCCCCCCCEE
Q ss_conf 29999999841699999999999699999999555765224999983968999980578987399999968989998544
Q 001696 285 SYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYL 364 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d~~l 364 (1026)
+.|.|+|++|++++..+..+.+||||++.++++.++|++++++.||.|||.|.|.+.. ...|.|+|||++.+++|++|
T Consensus 6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~d~~i 83 (133)
T d2nq3a1 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSDVLL 83 (133)
T ss_dssp EEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSCCEEE
T ss_pred EEEEEEEEEEECCCCCCCCCCCCEEEEEEECCEEEEEEEEEECCCEEECCEEEEEEEE--CCEEEEEEEECCCCCCCCEE
T ss_conf 3899999993999767788996959999999847843799703627876567999980--22069999982688899468
Q ss_pred EEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEE
Q ss_conf 99999854258989999999898999212899972134599999
Q 001696 365 GRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAI 408 (1026)
Q Consensus 365 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~ 408 (1026)
|++.++|.++.............|+.+....+.....|+|.+.+
T Consensus 84 G~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l 127 (133)
T d2nq3a1 84 GTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICL 127 (133)
T ss_dssp EEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEE
T ss_pred EEEEEEHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEEE
T ss_conf 99999979934135995215999986578889832789999999
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.85 E-value=1.1e-20 Score=133.29 Aligned_cols=102 Identities=25% Similarity=0.447 Sum_probs=74.9
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEE-----CCEEEEEEEECCCCCCEEECEEEEEEECC--CCEEEEEEEEC
Q ss_conf 089999997038978755899997680999998-----99999832213889962300889995279--97799999959
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKY-----GQKWVRTRTILDTFNPKWNEQYTWEVYDP--CTVITLGVFDN 684 (1026)
Q Consensus 612 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-----g~~~~~T~~~~~t~~P~wne~~~~~v~~~--~~~l~i~v~d~ 684 (1026)
+.|.|.|++|+||+++ +..|.+||||++.+ +..+++|+++++|.||.|||.|.|.+..+ ...|.|+|||+
T Consensus 15 ~~L~V~V~~a~~L~~~---d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~ 91 (132)
T d1a25a_ 15 EVLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDW 91 (132)
T ss_dssp SEEEEEEEEEESCCCC---STTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEEC
T ss_pred CEEEEEEEEEECCCCC---CCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCEEEEEEEEC
T ss_conf 9999999855499887---8998969089999826788866408841658899845549999957645697876997806
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEE
Q ss_conf 97899975689999899700999997663358956865595355
Q 001696 685 CHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLV 728 (1026)
Q Consensus 685 ~~~~~~~~~~~~~~~~d~~iG~~~i~L~~l~~~~~~~~~~~L~~ 728 (1026)
+.++ +|++||.+.|+|+++..+. ..+||+|..
T Consensus 92 d~~~-----------~d~~iG~~~i~l~~l~~~~-~~~W~~L~~ 123 (132)
T d1a25a_ 92 DLTS-----------RNDFMGSLSFGISELQKAG-VDGWFKLLS 123 (132)
T ss_dssp CSSS-----------CCEEEEEEEEEHHHHTTCC-EEEEEECBC
T ss_pred CCCC-----------CCCEEEEEEEEHHHCCCCC-CCEEEECCC
T ss_conf 7788-----------8967699999689948887-882899978
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1.1e-20 Score=133.47 Aligned_cols=115 Identities=24% Similarity=0.434 Sum_probs=60.6
Q ss_pred EEEEEEEEEEECCCCC---CCCCCCCCEEEEEECC---EEEEEEEECCCCCCEEEEEEEEEECCCCCCEEEEEEEECCCC
Q ss_conf 2999999984169999---9999999699999999---555765224999983968999980578987399999968989
Q 001696 285 SYLYVRVVKAKDLPPS---SITGSCDPYVEVKMGN---YKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMV 358 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~---~~~g~~dPyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~ 358 (1026)
+.|+|+|++|+||+.. |..|.+||||++.+++ ++.+|++++++.||.|||+|.|.+.+.....|.|+|||++..
T Consensus 3 ~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~~ 82 (126)
T d1rlwa_ 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV 82 (126)
T ss_dssp EEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSS
T ss_pred CEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCEECEEEEECCCCCCCCCEEEEEEECCCC
T ss_conf 18999999860898863666688978189999977346116764047886501011450104584127179999987997
Q ss_pred CCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEE
Q ss_conf 9985449999985425898999999989899921289997213459999995
Q 001696 359 GRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWM 410 (1026)
Q Consensus 359 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 410 (1026)
+|++||++.++|.++..+...+ .||+|.+. ..|++.+++.+
T Consensus 83 -~d~~lG~~~i~L~~l~~~~~~~-----~~~~L~~~-----~~g~i~~~l~~ 123 (126)
T d1rlwa_ 83 -MDETLGTATFTVSSMKVGEKKE-----VPFIFNQV-----TEMVLEMSLEV 123 (126)
T ss_dssp -CCEEEEEEEEEGGGSCTTCEEE-----EEEEETTT-----EEEEEEEEEEC
T ss_pred -CCCEEEEEEEEHHHCCCCCEEE-----EEEECCCC-----CEEEEEEEEEE
T ss_conf -8974899999988865998388-----99983489-----80899999999
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.84 E-value=4e-20 Score=130.15 Aligned_cols=98 Identities=19% Similarity=0.213 Sum_probs=62.3
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEECCCCCCEEECEEEEEEECCCCEEEEEEEECCCCCCCC
Q ss_conf 08999999703897875589999768099999899999832213889962300889995279977999999599789997
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGE 691 (1026)
Q Consensus 612 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 691 (1026)
+.|.|+|++|++|.+. +++||||++++++...+|.+++ +.||.|||.|.|++.++...|.|+|||++..
T Consensus 2 ~~L~V~v~~a~~l~~~------~~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~---- 70 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQ------EKFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRLDLGLTVEVWNKGLI---- 70 (128)
T ss_dssp EEEEEEEEEEECSSCG------GGCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCCSSEEEEEEEECCSS----
T ss_pred EEEEEEEEEEECCCCC------CCCCEEEEEEECCEEEEEEEEC-CCCCEEEEEEEEEECCCCCEEEEEEEECCCC----
T ss_conf 3899999998889898------8868099999599989998746-8998389999885146652599999967876----
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCCC--CCEEEEEEEEEE
Q ss_conf 5689999899700999997663358--956865595355
Q 001696 692 KQNGSSAVRDSRIGKVRIRLSTLEA--HRIYTHSYPLLV 728 (1026)
Q Consensus 692 ~~~~~~~~~d~~iG~~~i~L~~l~~--~~~~~~~~~L~~ 728 (1026)
.|++||++.|+|+++.. ......||+|..
T Consensus 71 --------~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~ 101 (128)
T d2cjta1 71 --------WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDS 101 (128)
T ss_dssp --------CEEEEEEEEEEGGGSCBCSSCCCCEEEECBC
T ss_pred --------CCCCEEEEEEEEHHHCCCCCCCCCEEEECCC
T ss_conf --------7861499999943301478878885078886
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.84 E-value=1e-19 Score=127.76 Aligned_cols=117 Identities=19% Similarity=0.367 Sum_probs=66.8
Q ss_pred EEEEEEEEEEECCCCC--CCCCCCCCEEEEEEC-----CEEEEEEEECC-CCCCEEEEEEEEEECCCCCCEEEEEEEECC
Q ss_conf 2999999984169999--999999969999999-----95557652249-999839689999805789873999999689
Q 001696 285 SYLYVRVVKAKDLPPS--SITGSCDPYVEVKMG-----NYKGRTKHFEK-RMNPEWNQVFAFSKERIQSSMLEVFLKDKE 356 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~--~~~g~~dPyv~v~~~-----~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~L~i~V~d~~ 356 (1026)
..|.|+|++|++|+.. +.++.+||||++++. .++.+|+++++ +.||.|||+|.|.+.......|.|+|||++
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d 83 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD 83 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred EEEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCEEEEEEEEEEECCHHCEEEEEEEEEC
T ss_conf 79999999922999778988998186999999667888578788889666579659779999977632325899999806
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEE
Q ss_conf 89998544999998542589899999998989992128999721345999999
Q 001696 357 MVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIW 409 (1026)
Q Consensus 357 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 409 (1026)
..++|++||++.++|..+..+ .+|++|.+..+..-..+.|.+.+.
T Consensus 84 ~~~~d~~iG~~~i~l~~l~~g--------~~~~~L~~~~g~~~~~~~L~v~i~ 128 (131)
T d1qasa2 84 SSSKNDFIGQSTIPWNSLKQG--------YRHVHLLSKNGDQHPSATLFVKIS 128 (131)
T ss_dssp TTTCCEEEEEEEEEGGGBCCE--------EEEEEEECTTSCEEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEEECCCCC--------CEEEECCCCCCCCCCCCEEEEEEE
T ss_conf 888986889999997626787--------789989899959988778999999
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.84 E-value=4e-20 Score=130.16 Aligned_cols=106 Identities=23% Similarity=0.377 Sum_probs=56.6
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCEEEEEE---CCEEEEEEEECCCCCCCCCCCEEEEEEECC--CCCEEEEEEEECCCCC
Q ss_conf 99999999684699999999972999999---995999320019999982163569975279--7673999999823899
Q 001696 449 YLRVNVIEAQDIVPNDRNRLPEGFVKVQV---GNQVLKTKICPTPTTNPLWNEDLVFVAAEP--FEEQLFLTVEDRVHAS 523 (1026)
Q Consensus 449 ~l~V~I~~a~~L~~~d~~~~~DpyV~v~l---g~~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~d~~~ 523 (1026)
.|.|+|++|++|+..+.++.+||||++++ +.+.++|+++ +++.||.|||.|.|.+... ....|.|+|||++.++
T Consensus 19 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~-~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~~~ 97 (130)
T d1dqva1 19 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVH-RKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFS 97 (130)
T ss_dssp EEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCC-CSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSS
T ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEECEEE-CCCCCEEEEEEEEEEECHHHCCCCEEEEEEEECCCCC
T ss_conf 999999860489641689975667899971678751866047-6877706526788988457718986999998768899
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 9805599998074322324788764445983227
Q 001696 524 KDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKF 557 (1026)
Q Consensus 524 ~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 557 (1026)
+|++||++.|++.......+ .....|++|...
T Consensus 98 ~d~~iG~~~i~~~~~l~~~~--~~~~~W~~L~~~ 129 (130)
T d1dqva1 98 RHDLIGQVVLDNLLELAEQP--PDRPLWRDILEG 129 (130)
T ss_dssp CCCEEEEEECCCTTGGGSSC--SSCCCCEECBCC
T ss_pred CCCEEEEEEECCHHHHHCCC--CCCCEEEECCCC
T ss_conf 98668999987615420279--888689822169
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.83 E-value=6.5e-20 Score=128.91 Aligned_cols=115 Identities=21% Similarity=0.390 Sum_probs=68.4
Q ss_pred EEEEEEEEEEEECCCCCC-----------CCCCCCCEEEEEECCEE-EEEEEECCCCCCEEEEEEEEEECCCCCCEEEEE
Q ss_conf 129999999841699999-----------99999969999999955-576522499998396899998057898739999
Q 001696 284 MSYLYVRVVKAKDLPPSS-----------ITGSCDPYVEVKMGNYK-GRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVF 351 (1026)
Q Consensus 284 ~~~L~V~v~~a~~L~~~~-----------~~g~~dPyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~ 351 (1026)
.|.|+|+|++|++|++.+ ..+.+||||+++++++. .+|++++++.||.|||.|.|.+.+. ..|.|+
T Consensus 5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~~--~~l~i~ 82 (136)
T d1gmia_ 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG--RKIELA 82 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE--CEEEEE
T ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECC--CCEEEE
T ss_conf 899999999947998653444333245678887583799991898676705884988953963799999327--845999
Q ss_pred EEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEE
Q ss_conf 99689899985449999985425898999999989899921289997213459999995
Q 001696 352 LKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWM 410 (1026)
Q Consensus 352 V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 410 (1026)
|||++.+++|++||.+.+++.++...... ....|++|++ .|++++.+.+
T Consensus 83 V~d~~~~~~d~~iG~~~i~l~~l~~~~~~---~~~~w~~L~p-------~G~v~l~v~~ 131 (136)
T d1gmia_ 83 VFHDAPIGYDDFVANCTIQFEELLQNGSR---HFEDWIDLEP-------EGKVYVIIDL 131 (136)
T ss_dssp EEECCSSSSCEEEEEEEEEHHHHTSTTCS---EEEEEEECBS-------SCEEEEEEEE
T ss_pred EEEECCCCCCEEEEEEEEEHHHHHHCCCC---CEEEEEECCC-------CCEEEEEEEE
T ss_conf 99966898740578999997995316896---2248996778-------8299999999
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.83 E-value=1.5e-21 Score=138.43 Aligned_cols=102 Identities=25% Similarity=0.394 Sum_probs=55.4
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECC--------------EEEEEEEECCCCCCEEECEEEEEEEC----C
Q ss_conf 08999999703897875589999768099999899--------------99983221388996230088999527----9
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ--------------KWVRTRTILDTFNPKWNEQYTWEVYD----P 673 (1026)
Q Consensus 612 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~--------------~~~~T~~~~~t~~P~wne~~~~~v~~----~ 673 (1026)
|.|.|.|++|+||+++ +..|.+||||++.+.+ ...+|++++++.||.|||.|.|.+.. .
T Consensus 18 ~~L~V~V~~A~~L~~~---d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~ 94 (142)
T d1rh8a_ 18 GNLIIHILQARNLVPR---DNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLM 94 (142)
T ss_dssp TEEEEEEEEEESCCCC---SSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHT
T ss_pred CEEEEEEEEEECCCCC---CCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEEEEECCCCCC
T ss_conf 9999999973899886---7899979478999946766310002578835043467838888346789987522333467
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEE
Q ss_conf 977999999599789997568999989970099999766335895686559535
Q 001696 674 CTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 674 ~~~l~i~v~d~~~~~~~~~~~~~~~~~d~~iG~~~i~L~~l~~~~~~~~~~~L~ 727 (1026)
...|.|.|||++.++ +|++||.+.|+|.++..+....+||+|.
T Consensus 95 ~~~L~i~V~d~d~~~-----------~~~~lG~~~i~L~~l~~~~~~~~W~~L~ 137 (142)
T d1rh8a_ 95 KKTLEVTVWDYDRFS-----------SNDFLGEVLIDLSSTSHLDNTPRWYPLK 137 (142)
T ss_dssp TCEEEEEEEEECSSS-----------CEEEEEEEEEETTSCGGGTTCCEEEECB
T ss_pred CCEEEEEEEEECCCC-----------CCEEEEEEEEEHHHCCCCCCCEEEEECC
T ss_conf 787999999705899-----------9814689999867757889860999793
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=3.9e-20 Score=130.20 Aligned_cols=112 Identities=31% Similarity=0.560 Sum_probs=77.3
Q ss_pred EEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEC-----CEEEEEEEECCCCCCEEEEEEEEE-EC--CCC
Q ss_conf 0576424556212999999984169999999999969999999-----955576522499998396899998-05--789
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMG-----NYKGRTKHFEKRMNPEWNQVFAFS-KE--RIQ 344 (1026)
Q Consensus 273 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-----~~~~kT~v~~~t~nP~wne~f~f~-v~--~~~ 344 (1026)
++++.|+. ..+.|.|+|++|+||+..+..+.+||||++.+. ..+++|++++++.||.|||+|.|. +. +..
T Consensus 4 ~l~l~y~~--~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~ 81 (125)
T d2bwqa1 4 SIKLWFDK--VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFR 81 (125)
T ss_dssp EEEEEEET--TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGG
T ss_pred EEEEEEEC--CCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEECCCCCCEECCEEEEEEECHHHCC
T ss_conf 99999979--9999999999827998867999989789999967788864121677868999898539999603866628
Q ss_pred CCEEEEEEEECCCCC--CCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 873999999689899--985449999985425898999999989899921
Q 001696 345 SSMLEVFLKDKEMVG--RDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLE 392 (1026)
Q Consensus 345 ~~~L~i~V~d~~~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 392 (1026)
...|.|+|||++.++ ++++||++.+++.++..... .+||+|+
T Consensus 82 ~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~~------~~Wy~L~ 125 (125)
T d2bwqa1 82 ERMLEITLWDQARVREEESEFLGEILIELETALLDDE------PHWYKLQ 125 (125)
T ss_dssp GCEEEEEEEEC-------CEEEEEEEEEGGGCCCSSC------EEEEECC
T ss_pred CCEEEEEEEECCCCCCCCCEEEEEEEEECHHCCCCCC------CEEEECC
T ss_conf 8879999998888889999069999998055088999------9989594
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.81 E-value=4.2e-19 Score=124.18 Aligned_cols=103 Identities=27% Similarity=0.437 Sum_probs=71.6
Q ss_pred CCC-EEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEECC-----EEEEEEEECCCCCCEEEEEEEEEECCC
Q ss_conf 345-05764245562129999999841699999999999699999999-----555765224999983968999980578
Q 001696 270 SGE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKERI 343 (1026)
Q Consensus 270 ~~~-~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~ 343 (1026)
+|+ ++++.|+. ..+.|.|+|++|+||+..+..+.+||||++++.. ...+|++++++.||+|||+|.|.+...
T Consensus 11 ~G~l~~sl~Y~~--~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~ 88 (157)
T d1uowa_ 11 LGDICFSLRYVP--TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE 88 (157)
T ss_dssp CCEEEEEEEEET--TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGG
T ss_pred EEEEEEEEEECC--CCCEEEEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCEECCCCCCCCCCCCCCEEEEEECHH
T ss_conf 469999999868--899999999997971365579997906999995388623450110236888963677699996089
Q ss_pred --CCCEEEEEEEECCCCCCCCEEEEEEEECCCC
Q ss_conf --9873999999689899985449999985425
Q 001696 344 --QSSMLEVFLKDKEMVGRDDYLGRVAFDLNEV 374 (1026)
Q Consensus 344 --~~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l 374 (1026)
....|.|+|||++.++++++||++.|++...
T Consensus 89 ~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~ 121 (157)
T d1uowa_ 89 QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 121 (157)
T ss_dssp GGGGCEEEEEEEECCSSSCCCEEEEEEEETTCC
T ss_pred HCCCCEEEEEECCCCCCCCCCEEEEEEEECCCC
T ss_conf 937638999981569888884669999806008
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1.1e-18 Score=121.82 Aligned_cols=106 Identities=24% Similarity=0.463 Sum_probs=79.4
Q ss_pred CC-EEEEEECCCCCEEEEEEEEEEEECCCCCCCCC-CCCCEEEEEE---CCEEEEEEEECCCCCCEEEEEEEEEE-C--C
Q ss_conf 45-05764245562129999999841699999999-9996999999---99555765224999983968999980-5--7
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITG-SCDPYVEVKM---GNYKGRTKHFEKRMNPEWNQVFAFSK-E--R 342 (1026)
Q Consensus 271 ~~-~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g-~~dPyv~v~~---~~~~~kT~v~~~t~nP~wne~f~f~v-~--~ 342 (1026)
|. ++++.|+. ....|.|+|++|+||+.++..+ .+||||++.+ ..++++|++++++.||.|||+|.|.. . +
T Consensus 9 G~l~~sl~Y~~--~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~ 86 (138)
T d1ugka_ 9 GTLFFSLEYNF--ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQ 86 (138)
T ss_dssp CEEEEEEEEEG--GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTT
T ss_pred EEEEEEEEEEC--CCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEECEEEECCCCCCEEEEEEEEEECHHH
T ss_conf 89999999958--8999999999810989888999865339999992899986707147677897445689996128899
Q ss_pred CCCCEEEEEEEECCCCCCCCEEEEEEEECCCCCCCC
Q ss_conf 898739999996898999854499999854258989
Q 001696 343 IQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRV 378 (1026)
Q Consensus 343 ~~~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~~ 378 (1026)
.....|.|+|||.+.+++|++||++.++|.++....
T Consensus 87 l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~~ 122 (138)
T d1ugka_ 87 IQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE 122 (138)
T ss_dssp GGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTT
T ss_pred CCCCEEEEEEEECCCCCCCCEEEEEEEECCCCCCCC
T ss_conf 556558999998999888957899999834165778
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=2.2e-19 Score=125.85 Aligned_cols=102 Identities=24% Similarity=0.403 Sum_probs=55.3
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEE-----CCEEEEEEEECCCCCCEEECEEEEEEECC----CCEEEEEEE
Q ss_conf 089999997038978755899997680999998-----99999832213889962300889995279----977999999
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKY-----GQKWVRTRTILDTFNPKWNEQYTWEVYDP----CTVITLGVF 682 (1026)
Q Consensus 612 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-----g~~~~~T~~~~~t~~P~wne~~~~~v~~~----~~~l~i~v~ 682 (1026)
+.|.|+|++|+||+++ +..+.+||||++.+ +....+|++++++.||.|||.|.|....+ ...|.|.||
T Consensus 14 ~~L~V~V~~a~~L~~~---~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~ 90 (125)
T d2bwqa1 14 HQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW 90 (125)
T ss_dssp TEEEEEEEEEESCCCC---TTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred CEEEEEEEEEECCCCC---CCCCCCCEEEEEEEECCCCCCCCCCCCEECCCCCCEECCEEEEEEECHHHCCCCEEEEEEE
T ss_conf 9999999982799886---7999989789999967788864121677868999898539999603866628887999999
Q ss_pred ECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEE
Q ss_conf 59978999756899998997009999976633589568655953
Q 001696 683 DNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPL 726 (1026)
Q Consensus 683 d~~~~~~~~~~~~~~~~~d~~iG~~~i~L~~l~~~~~~~~~~~L 726 (1026)
|.+.++ .+.+++||++.|+|+++..... .+||+|
T Consensus 91 d~~~~~---------~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L 124 (125)
T d2bwqa1 91 DQARVR---------EEESEFLGEILIELETALLDDE-PHWYKL 124 (125)
T ss_dssp EC----------------CEEEEEEEEEGGGCCCSSC-EEEEEC
T ss_pred ECCCCC---------CCCCEEEEEEEEECHHCCCCCC-CEEEEC
T ss_conf 888888---------9999069999998055088999-998959
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.81 E-value=9.8e-19 Score=122.06 Aligned_cols=88 Identities=32% Similarity=0.437 Sum_probs=43.7
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEE--CC---EEEEEEEECCCCCCEEECEEEEEEECC---CCEEEEEEEE
Q ss_conf 089999997038978755899997680999998--99---999832213889962300889995279---9779999995
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKY--GQ---KWVRTRTILDTFNPKWNEQYTWEVYDP---CTVITLGVFD 683 (1026)
Q Consensus 612 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--g~---~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~v~d 683 (1026)
+.|.|.|++|+||+.. +..+.+||||++.+ ++ ...+|++++++.||.|||.|.|++... ...|.|.|||
T Consensus 25 ~~L~V~V~~a~~L~~~---~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d 101 (157)
T d1uowa_ 25 GKLTVVILEAKNLKKM---DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLD 101 (157)
T ss_dssp TEEEEEEEEEESCCCC---STTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred CEEEEEEEEEEECCCC---CCCCCCCEEEEEEEECCCCCCCCEECCCCCCCCCCCCCCEEEEEECHHHCCCCEEEEEECC
T ss_conf 9999999997971365---5799979069999953886234501102368889636776999960899376389999815
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf 997899975689999899700999997663
Q 001696 684 NCHLGGGEKQNGSSAVRDSRIGKVRIRLST 713 (1026)
Q Consensus 684 ~~~~~~~~~~~~~~~~~d~~iG~~~i~L~~ 713 (1026)
++.++ ++++||.+.|++..
T Consensus 102 ~~~~~-----------~~~~iG~~~i~l~~ 120 (157)
T d1uowa_ 102 YDKIG-----------KNDAIGKVFVGYNS 120 (157)
T ss_dssp CCSSS-----------CCCEEEEEEEETTC
T ss_pred CCCCC-----------CCCEEEEEEEECCC
T ss_conf 69888-----------88466999980600
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.80 E-value=9.9e-19 Score=122.06 Aligned_cols=100 Identities=28% Similarity=0.378 Sum_probs=52.4
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEEEECCCCCCEEEEEEEEEECCCCCCEEEEEEEECCCCCCCCEE
Q ss_conf 29999999841699999999999699999999555765224999983968999980578987399999968989998544
Q 001696 285 SYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYL 364 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~~~~~~d~~l 364 (1026)
+.|.|+|++|++|.+++ ..||||++++++++.+|.+++ +.||.|||.|.|.+.++ ...|.|+|||++.. +|++|
T Consensus 2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~-~~~L~v~V~d~~~~-~d~~l 75 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRL-DLGLTVEVWNKGLI-WDTMV 75 (128)
T ss_dssp EEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCC-SSEEEEEEEECCSS-CEEEE
T ss_pred EEEEEEEEEEECCCCCC---CCCEEEEEEECCEEEEEEEEC-CCCCEEEEEEEEEECCC-CCEEEEEEEECCCC-CCCCE
T ss_conf 38999999988898988---868099999599989998746-89983899998851466-52599999967876-78614
Q ss_pred EEEEEECCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 99999854258989999999898999212
Q 001696 365 GRVAFDLNEVPTRVPPDSPLAPQWYRLED 393 (1026)
Q Consensus 365 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 393 (1026)
|++.|+|.++...... ....||+|..
T Consensus 76 G~~~I~L~~l~~~~~~---~~~~W~~L~~ 101 (128)
T d2cjta1 76 GTVWIPLRTIRQSNEE---GPGEWLTLDS 101 (128)
T ss_dssp EEEEEEGGGSCBCSSC---CCCEEEECBC
T ss_pred EEEEEEEHHHCCCCCC---CCCEEEECCC
T ss_conf 9999994330147887---8885078886
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=9e-19 Score=122.28 Aligned_cols=113 Identities=19% Similarity=0.395 Sum_probs=79.8
Q ss_pred EEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEECC----EEEEEEEECCCCCCEEEEEEEEEEC--CCCCC
Q ss_conf 05764245562129999999841699999999999699999999----5557652249999839689999805--78987
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN----YKGRTKHFEKRMNPEWNQVFAFSKE--RIQSS 346 (1026)
Q Consensus 273 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~----~~~kT~v~~~t~nP~wne~f~f~v~--~~~~~ 346 (1026)
++++.|+. ..+.|.|+|++|+||.. .|.+||||++.+.+ ..++|++++++.||.|||.|.|.+. ++...
T Consensus 16 ~~sl~y~~--~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~ 90 (138)
T d1wfma_ 16 HYCLDYDC--QKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTA 90 (138)
T ss_dssp EEEEEEET--TTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTC
T ss_pred EEEEEECC--CCCEEEEEEEECCCCCC---CCCCCCEEEEEECCCCCCCCEEEEEECCCCCCEEEEEEEEEEEEHHCCCE
T ss_conf 99999978--89999999998679898---99838379999879988542530387778995381308998651016621
Q ss_pred EEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 3999999689899985449999985425898999999989899921289
Q 001696 347 MLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRR 395 (1026)
Q Consensus 347 ~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 395 (1026)
.|.|+|||++.++++++||++.|+|.++......+ .|+.|....
T Consensus 91 ~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~~~-----~W~~L~~~~ 134 (138)
T d1wfma_ 91 TLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAA-----QWGELKTSG 134 (138)
T ss_dssp EEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCC-----EEEECCCCS
T ss_pred EEEEEEEEECCCCCCEEEEEEEEEHHHCCCCCCCE-----EEEECCCCC
T ss_conf 89998742055663145459999857734898865-----969588899
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=8e-19 Score=122.59 Aligned_cols=101 Identities=18% Similarity=0.125 Sum_probs=75.1
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEC----CEEEEEEEECCCCCCEEECEEEEEEECC---CCEEEEEEEEC
Q ss_conf 0899999970389787558999976809999989----9999832213889962300889995279---97799999959
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG----QKWVRTRTILDTFNPKWNEQYTWEVYDP---CTVITLGVFDN 684 (1026)
Q Consensus 612 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g----~~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~v~d~ 684 (1026)
+.|.|+|++|++|.. .|.+||||++.+. ....+|++++++.||.|||.|.|++... ...|.|.|||+
T Consensus 26 ~~L~V~v~~a~~L~~------~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~ 99 (138)
T d1wfma_ 26 AELFVTRLEAVTSNH------DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTC 99 (138)
T ss_dssp TEEEEEEEEEECCCC------SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEEC
T ss_pred CEEEEEEEECCCCCC------CCCCCCEEEEEECCCCCCCCEEEEEECCCCCCEEEEEEEEEEEEHHCCCEEEEEEEEEE
T ss_conf 999999998679898------99838379999879988542530387778995381308998651016621899987420
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf 978999756899998997009999976633589568655953550
Q 001696 685 CHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVL 729 (1026)
Q Consensus 685 ~~~~~~~~~~~~~~~~d~~iG~~~i~L~~l~~~~~~~~~~~L~~~ 729 (1026)
+.++ ++++||.+.|+|.++..+.....||+|...
T Consensus 100 ~~~~-----------~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~ 133 (138)
T d1wfma_ 100 DRFS-----------RHSVAGELRLGLDGTSVPLGAAQWGELKTS 133 (138)
T ss_dssp CSSC-----------TTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred CCCC-----------CCEEEEEEEEEHHHCCCCCCCEEEEECCCC
T ss_conf 5566-----------314545999985773489886596958889
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.80 E-value=7.6e-19 Score=122.73 Aligned_cols=99 Identities=27% Similarity=0.455 Sum_probs=57.0
Q ss_pred EEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEE--CC---EEEEEEEECCCCCCEEEEEEEEEEC--CCCC
Q ss_conf 057642455621299999998416999999999996999999--99---5557652249999839689999805--7898
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKM--GN---YKGRTKHFEKRMNPEWNQVFAFSKE--RIQS 345 (1026)
Q Consensus 273 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~--~~---~~~kT~v~~~t~nP~wne~f~f~v~--~~~~ 345 (1026)
++++.|+. ..+.|.|+|++|+||+.++..+.+||||++++ ++ .+.+|++++++.||.|||+|.|.+. ....
T Consensus 5 ~~sl~Y~~--~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~ 82 (138)
T d1w15a_ 5 LVSLCYQS--TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEE 82 (138)
T ss_dssp EEEEEEET--TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTT
T ss_pred EEEEEECC--CCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEECCCCCCEECCEEEEEECHHHHCC
T ss_conf 99999958--8999999999968899988899857899999957742676435531889999737747999823799275
Q ss_pred CEEEEEEEECCCCCCCCEEEEEEEECCC
Q ss_conf 7399999968989998544999998542
Q 001696 346 SMLEVFLKDKEMVGRDDYLGRVAFDLNE 373 (1026)
Q Consensus 346 ~~L~i~V~d~~~~~~d~~lG~~~i~l~~ 373 (1026)
..|.|.|||++.++++++||++.|++..
T Consensus 83 ~~l~i~v~d~~~~~~~~~iG~~~i~l~~ 110 (138)
T d1w15a_ 83 ISVEFLVLDSERGSRNEVIGRLVLGATA 110 (138)
T ss_dssp EEEEEEEEECCTTSCCEEEEEEEESTTC
T ss_pred CEEEEEEEECCCCCCCCEEEEEEECCHH
T ss_conf 5899999867998889788999986600
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=1.3e-18 Score=121.30 Aligned_cols=87 Identities=29% Similarity=0.362 Sum_probs=38.4
Q ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEEE--CC---EEEEEEEECCCCCCCCCCCEEEEEEECC--CCCEEEEEEEECCCC
Q ss_conf 9999999684699999999972999999--99---5999320019999982163569975279--767399999982389
Q 001696 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV--GN---QVLKTKICPTPTTNPLWNEDLVFVAAEP--FEEQLFLTVEDRVHA 522 (1026)
Q Consensus 450 l~V~I~~a~~L~~~d~~~~~DpyV~v~l--g~---~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~d~~ 522 (1026)
|.|+|++|++|+.++.++.+||||++++ ++ ...+|+++ +++.||.|||.|.|.+... ....|.|+|||++.+
T Consensus 17 L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~-~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~~~ 95 (138)
T d1w15a_ 17 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVK-KCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERG 95 (138)
T ss_dssp EEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCC-CSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTT
T ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEE-CCCCCCEECCEEEEEECHHHHCCCEEEEEEEECCCC
T ss_conf 9999999688999888998578999999577426764355318-899997377479998237992755899999867998
Q ss_pred CCCCEEEEEEEECCC
Q ss_conf 998055999980743
Q 001696 523 SKDEVLGKISLPLHI 537 (1026)
Q Consensus 523 ~~d~~lG~~~i~l~~ 537 (1026)
+++++||++.|++..
T Consensus 96 ~~~~~iG~~~i~l~~ 110 (138)
T d1w15a_ 96 SRNEVIGRLVLGATA 110 (138)
T ss_dssp SCCEEEEEEEESTTC
T ss_pred CCCCEEEEEEECCHH
T ss_conf 889788999986600
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=3e-18 Score=119.29 Aligned_cols=100 Identities=22% Similarity=0.413 Sum_probs=59.5
Q ss_pred EEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEC-----CEEEEEEEECCCCCCEEEEEEEEEECC--CCC
Q ss_conf 0576424556212999999984169999999999969999999-----955576522499998396899998057--898
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMG-----NYKGRTKHFEKRMNPEWNQVFAFSKER--IQS 345 (1026)
Q Consensus 273 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-----~~~~kT~v~~~t~nP~wne~f~f~v~~--~~~ 345 (1026)
++++.|+. ..+.|.|+|++|+||+.++..+.+||||++++. ..+++|++++++.||.|||+|.|.+.. +..
T Consensus 5 ~l~l~Y~~--~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~ 82 (137)
T d2cm5a1 5 LVSLMYST--QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAK 82 (137)
T ss_dssp EEEEEEET--TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGG
T ss_pred EEEEEEEC--CCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCEEECCEEECCCCCCCCCEEEEEEEEHHHCCC
T ss_conf 99999979--9999999999987899977787768699999976886656636875718999856649999968788561
Q ss_pred CEEEEEEEECCCCCCCCEEEEEEEECCCC
Q ss_conf 73999999689899985449999985425
Q 001696 346 SMLEVFLKDKEMVGRDDYLGRVAFDLNEV 374 (1026)
Q Consensus 346 ~~L~i~V~d~~~~~~d~~lG~~~i~l~~l 374 (1026)
..|.|.|||++.++++++||++.+++..+
T Consensus 83 ~~l~v~v~~~~~~~~~~~iG~~~i~l~~~ 111 (137)
T d2cm5a1 83 KSLDISVWDYDIGKSNDYIGGCQLGISAK 111 (137)
T ss_dssp CEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred CEEEEEEEECCCCCCCCEEEEEEECCCCC
T ss_conf 29999766179998887999987473004
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=2.4e-18 Score=119.85 Aligned_cols=89 Identities=24% Similarity=0.291 Sum_probs=47.0
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCEEEEEE-----CCEEEEEEEECCCCCCCCCCCEEEEEEECC--CCCEEEEEEEECCC
Q ss_conf 99999999684699999999972999999-----995999320019999982163569975279--76739999998238
Q 001696 449 YLRVNVIEAQDIVPNDRNRLPEGFVKVQV-----GNQVLKTKICPTPTTNPLWNEDLVFVAAEP--FEEQLFLTVEDRVH 521 (1026)
Q Consensus 449 ~l~V~I~~a~~L~~~d~~~~~DpyV~v~l-----g~~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~d~ 521 (1026)
.|.|+|++|+||+..+..+.+||||++++ ....++|+++ +++.||.|||.|.|.+... ....|.|.|||++.
T Consensus 16 ~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~-~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~~ 94 (137)
T d2cm5a1 16 GLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIK-KKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDI 94 (137)
T ss_dssp EEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCC-CSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS
T ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCEEECCEEE-CCCCCCCCCEEEEEEEEHHHCCCCEEEEEEEECCC
T ss_conf 99999999878999777877686999999768866566368757-18999856649999968788561299997661799
Q ss_pred CCCCCEEEEEEEECCCC
Q ss_conf 99980559999807432
Q 001696 522 ASKDEVLGKISLPLHIF 538 (1026)
Q Consensus 522 ~~~d~~lG~~~i~l~~l 538 (1026)
.+++++||++.+++..+
T Consensus 95 ~~~~~~iG~~~i~l~~~ 111 (137)
T d2cm5a1 95 GKSNDYIGGCQLGISAK 111 (137)
T ss_dssp SSCCEEEEEEEEETTCC
T ss_pred CCCCCEEEEEEECCCCC
T ss_conf 98887999987473004
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.5e-18 Score=121.05 Aligned_cols=90 Identities=26% Similarity=0.349 Sum_probs=41.1
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEE---CCEEEEEEEECCCCCCEEECEEEEEEECC----CCEEEEEEEEC
Q ss_conf 089999997038978755899997680999998---99999832213889962300889995279----97799999959
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKY---GQKWVRTRTILDTFNPKWNEQYTWEVYDP----CTVITLGVFDN 684 (1026)
Q Consensus 612 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~---g~~~~~T~~~~~t~~P~wne~~~~~v~~~----~~~l~i~v~d~ 684 (1026)
+.|.|+|++|+||+.++. ..+.+||||++.+ +...++|++++++.||.|||.|.|..... ...|.|.|||+
T Consensus 22 ~~L~V~V~~a~~L~~~d~--~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~ 99 (138)
T d1ugka_ 22 KAFVVNIKEARGLPAMDE--QSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSF 99 (138)
T ss_dssp TEEEEEEEEEESCCCCBT--TTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEE
T ss_pred CEEEEEEEEECCCCCCCC--CCCCCCEEEEEEECCCCCEEEECEEEECCCCCCEEEEEEEEEECHHHCCCCEEEEEEEEC
T ss_conf 999999998109898889--998653399999928999867071476778974456899961288995565589999989
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEECCCC
Q ss_conf 978999756899998997009999976633
Q 001696 685 CHLGGGEKQNGSSAVRDSRIGKVRIRLSTL 714 (1026)
Q Consensus 685 ~~~~~~~~~~~~~~~~d~~iG~~~i~L~~l 714 (1026)
+.++ ++++||.+.|+|+++
T Consensus 100 d~~~-----------~~~~iG~~~i~L~~~ 118 (138)
T d1ugka_ 100 DRFS-----------RDDIIGEVLIPLSGI 118 (138)
T ss_dssp CSSC-----------CCCCCEEEEEECTTC
T ss_pred CCCC-----------CCCEEEEEEEECCCC
T ss_conf 9988-----------895789999983416
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=3e-19 Score=125.08 Aligned_cols=103 Identities=24% Similarity=0.437 Sum_probs=70.8
Q ss_pred CCC-EEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEECC-----EEEEEEEECCCCCCEEEEEEEEEEC--
Q ss_conf 345-05764245562129999999841699999999999699999999-----5557652249999839689999805--
Q 001696 270 SGE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKE-- 341 (1026)
Q Consensus 270 ~~~-~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~-- 341 (1026)
+|+ ++++.|+. ..+.|.|+|++|+||+..+..+.+||||++++.+ .+.+|++++++.||.|||+|.|.+.
T Consensus 6 ~G~l~~sl~Y~~--~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~ 83 (145)
T d1dqva2 6 LGELNFSLCYLP--TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPE 83 (145)
T ss_dssp CCEEEEEEEEET--TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSG
T ss_pred CEEEEEEEEECC--CCCEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCEEECCEEEECCCCCEECCEEEEEEEHH
T ss_conf 147999999928--999999999998679873789995840999990677663560678994887740330699998411
Q ss_pred CCCCCEEEEEEEECCCCCCCCEEEEEEEECCCC
Q ss_conf 789873999999689899985449999985425
Q 001696 342 RIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEV 374 (1026)
Q Consensus 342 ~~~~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l 374 (1026)
.+....|.|.|||++..+++++||.+.|++..+
T Consensus 84 ~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~ 116 (145)
T d1dqva2 84 SVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAA 116 (145)
T ss_dssp GGGSCCCCCEEEECCSSSCCEEEEECCCSSCTT
T ss_pred HCCCCEEEEEEEECCCCCCCCEEEEEEECCHHC
T ss_conf 368778999997569998896799999881671
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=8.8e-18 Score=116.55 Aligned_cols=89 Identities=28% Similarity=0.319 Sum_probs=52.8
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCEEEEEECC-----EEEEEEEECCCCCCCCCCCEEEEEEECC--CCCEEEEEEEECCC
Q ss_conf 9999999968469999999997299999999-----5999320019999982163569975279--76739999998238
Q 001696 449 YLRVNVIEAQDIVPNDRNRLPEGFVKVQVGN-----QVLKTKICPTPTTNPLWNEDLVFVAAEP--FEEQLFLTVEDRVH 521 (1026)
Q Consensus 449 ~l~V~I~~a~~L~~~d~~~~~DpyV~v~lg~-----~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~d~ 521 (1026)
.|.|+|++|+||+..+..+.+||||++++.. ..++|+++ +++.||.|||.|.|.+... ....|.|.|||++.
T Consensus 21 ~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~-~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~~ 99 (145)
T d1dqva2 21 LLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIK-KNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDC 99 (145)
T ss_dssp EEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCC-CSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCS
T ss_pred EEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCEEECCEEE-ECCCCCEECCEEEEEEEHHHCCCCEEEEEEEECCC
T ss_conf 99999999867987378999584099999067766356067899-48877403306999984113687789999975699
Q ss_pred CCCCCEEEEEEEECCCC
Q ss_conf 99980559999807432
Q 001696 522 ASKDEVLGKISLPLHIF 538 (1026)
Q Consensus 522 ~~~d~~lG~~~i~l~~l 538 (1026)
.+++++||++.|++..+
T Consensus 100 ~~~~~~iG~~~i~l~~~ 116 (145)
T d1dqva2 100 IGHNEVIGVCRVGPEAA 116 (145)
T ss_dssp SSCCEEEEECCCSSCTT
T ss_pred CCCCCEEEEEEECCHHC
T ss_conf 98896799999881671
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.69 E-value=5.8e-17 Score=111.78 Aligned_cols=50 Identities=16% Similarity=0.392 Sum_probs=19.9
Q ss_pred CCCCCCEEEEEECCE-----EEEEEEECCCCCCEEECEEEEEEECCCCEEEEEEEE
Q ss_conf 997680999998999-----998322138899623008899952799779999995
Q 001696 633 RGSTDAYCIAKYGQK-----WVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFD 683 (1026)
Q Consensus 633 ~g~~dpyv~v~~g~~-----~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d 683 (1026)
.|.+||||+|.+++. ..+|+++++|+||+|||+|.|.|.+ ...|.|.|||
T Consensus 21 ~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d 75 (123)
T d1bdya_ 21 DDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMR 75 (123)
T ss_dssp CCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEE
T ss_pred CCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCEEEEEEECC-CCEEEEEEEE
T ss_conf 988897799997686653344389986797886346699999744-6679999998
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.69 E-value=1.4e-16 Score=109.59 Aligned_cols=106 Identities=11% Similarity=0.155 Sum_probs=66.6
Q ss_pred EEEEEECCCCCCCCCCCCCCCEEEEEECC-----CEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCC
Q ss_conf 99996227886678999999789999679-----4431036789899633006998236887876530899995178999
Q 001696 4 VVEVVDAYDLMPKDGEGSASPFAEVDFLN-----QLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRP 78 (1026)
Q Consensus 4 ~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~v~V~d~d~~~ 78 (1026)
.|.+..+..+ +..++.+||||+|++.+ ..++|+++++|+||+|||+|.|.+.+. ..|.|.|||+|
T Consensus 8 ~~~~~~~~~~--~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~~-----~~l~i~V~d~d--- 77 (123)
T d1bdya_ 8 SFNSYELGSL--QAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEG-----RVIQIVLMRAA--- 77 (123)
T ss_dssp EEEEEECCTT--CCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCTT-----CEEEEEEEEET---
T ss_pred EEEEEECCCC--CCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCC-----CEEEEEEEECC---
T ss_conf 9997405668--8999888977999976866533443899867978863466999997446-----67999999864---
Q ss_pred CCCCCCCEEEEECCCCCCC----CCCCEEEEEECCCCCCCCCCCCCCCEEEEECC
Q ss_conf 9997532268844765433----58720487431111442233353102697428
Q 001696 79 IPGRHFLGRVRIPCSNLVR----KGEEVYQRFPLEKKWFLSSVKGEVGLKIYISP 129 (1026)
Q Consensus 79 ~~~d~~lG~~~i~l~~l~~----~~~~~~~~~~L~~~~~~~~~~G~i~l~~~~~~ 129 (1026)
++++|.+.+++.++.. .......|++|.+ .|+|++++.|+.
T Consensus 78 ---d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~-------~Gkl~l~v~~f~ 122 (123)
T d1bdya_ 78 ---EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP-------QAKVLMCVQYFL 122 (123)
T ss_dssp ---TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS-------SCEEEEEEEEEE
T ss_pred ---CCCCCCCEEEHHHEEECCCCCCCCCCEEEECCC-------CEEEEEEEEEEC
T ss_conf ---353675177566624011368986337970888-------889999999963
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=8.2e-14 Score=93.46 Aligned_cols=14 Identities=21% Similarity=0.622 Sum_probs=4.9
Q ss_pred CCEEEEEEEECCCC
Q ss_conf 80559999807432
Q 001696 525 DEVLGKISLPLHIF 538 (1026)
Q Consensus 525 d~~lG~~~i~l~~l 538 (1026)
|++||++.++++.+
T Consensus 79 ~~~lG~~~ipl~~l 92 (122)
T d2zkmx2 79 NKFLGHRIIPINAL 92 (122)
T ss_dssp TEEEEEEEEEGGGB
T ss_pred CCEEEEEEEECCCC
T ss_conf 99999999893217
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.2e-13 Score=92.61 Aligned_cols=16 Identities=19% Similarity=0.304 Sum_probs=5.6
Q ss_pred CEEEEEEEECCCCCCC
Q ss_conf 7009999976633589
Q 001696 702 SRIGKVRIRLSTLEAH 717 (1026)
Q Consensus 702 ~~iG~~~i~L~~l~~~ 717 (1026)
++||.+.|+|+.+..|
T Consensus 80 ~~lG~~~ipl~~l~~G 95 (122)
T d2zkmx2 80 KFLGHRIIPINALNSG 95 (122)
T ss_dssp EEEEEEEEEGGGBCCE
T ss_pred CEEEEEEEECCCCCCC
T ss_conf 9999999893217677
|
| >d2yrba1 b.7.1.1 (A:596-737) Fantom {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Fantom species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.93 E-value=0.41 Score=19.71 Aligned_cols=35 Identities=14% Similarity=0.299 Sum_probs=13.3
Q ss_pred CCCEEEEEE-CCEEEEEEEECCCCCCEEECEEEEEEE
Q ss_conf 680999998-999998322138899623008899952
Q 001696 636 TDAYCIAKY-GQKWVRTRTILDTFNPKWNEQYTWEVY 671 (1026)
Q Consensus 636 ~dpyv~v~~-g~~~~~T~~~~~t~~P~wne~~~~~v~ 671 (1026)
+..||.+.+ +-+...|.+ .+..+|.+|-+..+.|.
T Consensus 34 p~tF~T~~Fyd~Etq~TPv-~~g~~p~ynfts~Y~V~ 69 (142)
T d2yrba1 34 PVTFCTYAFYDFELQTTPV-VRGLHPEYNFTSQYLVH 69 (142)
T ss_dssp CEEEEEECSTTCCCEECCC-EESSSCCCCEEEEEEEC
T ss_pred CCEEEEEEEEEEEEECCCE-ECCCCCCCEEEEEEEEC
T ss_conf 7479999877002111750-21788761468999990
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