Citrus Sinensis ID: 001698

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------
MFFSGDPTTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPIKSSRESSMVSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFDLS
ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHEEEEcccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHcccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHccccccccccccccccHHHHHHHHcccccHHHHccHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHcHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccEEEEEccHHHHHHHHHHHcccHHHccccEEEEEEcccccccccccccccHHHHHHHHHHHHcccccccEEEccccccccccccccccccccccHHHHHHHHHHHHHcccEEccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccccEEEEEEEcccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccHHHHHHHHccccccccHHHHHHccccccccccccHHHHHHHHHHHcccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccc
cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHcccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccHcccccccccccEEEEEEEcccEEEEEEccHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHcccEEEEEccccccccccccHHcccccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEEccHHHHHHHHHHHcccHHHHHcEEEEEEccccccccccccccHHHHHHHHHHHHHHcccHcccEEEccccEEEcccccccHcccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccccccHHHHHcccHHHHHHHHHHHcccccccccccEcEEccccccccccEEccccHHHcEcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHccccHHHHHHHHHcccccccHHHHHHHcEEccccccccHHHHHHHHHHHcccHHHHHHHHHHHcccccccccHHHHHccccccEEEEEcccccccccccEEEHHHcEEEccccccHHHHHHHHHHHHHHccccccc
mffsgdpttrkrvdlggrsskerDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIqnvnrqcfgpqsaFFRQLFFFfnarnvsdISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDqlfvtpeesntpptLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIphigqkpcicpnidprwsffsqiltipflwHLFPYIKEvfatgrtsqHYIHQMALCVQNhanvlphevsmelpgYACLLGNILETagvalsqpdcsfemGVDLAAITTFLLkalppikssressmvsdddmtagdevmepvINRDLEKQITSAIDSRFLLQLTNVLFSgfhllrgphdegpgdkeVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCheirkwpflpylsgdapgwllplavfcpvhmltivdneefyeqekplslkDIRHLIVILREALWHLLwlnptshpnvgksvsspppankmlpaeAIQHRVSTVASEVLSQLQDwnnrrefvppsdfhadgvndffisqatidgtraneilkqapflvpftSRAKIFQSQLASVRqrhgshgvftrsrfRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNElgveeagidgggiFKDFMENITRAAFDVQYGlfketsdhllypnpgsgmiheQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNylndlpsldpeLYRHLIFLKHYEADISELELYFVILNNeygeqteeellpggknirvtNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLIsgsldsldfddlrqntnyvggyhsEHYVIEMFWEVLKSFSLENQKKFLKFVtgcsrgpllgfkylepLFCIQRAAgsaseealdrlptsatcmnllklppyrskeqMSTKLLYAINAEAGFDLS
mffsgdpttrkrvdlggrsskerdrqklleqtrlernrrlylrrqnhaaikiqkcfrgkkAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTpeesntpptLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKAlppikssressmvsdddmtagDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLasvrqrhgshgvftrsrfrirrDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEAldrlptsatcmnllklppyrskeqMSTKLLYAINaeagfdls
MFFSGDPTTRKRVDLGGRSSKERDRQKLLEQTrlernrrlylrrQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAffrqlffffNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPIKSSRESSMVSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHElqllisgsldsldfddlRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFDLS
**************************************RLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVT******PPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKAL***************************INRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHD****DKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNP*******************************VASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYS********DLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAG************SATCMNLLKLP**********KLLYAIN********
MFF********************************************AAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKE**********ISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQN*************PGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLK**************************************TSAIDSRFLLQLTNVLFSGFH****************AVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKR******************GWLLPLAVFCPVHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTS********************************EVLSQLQDWNNRREFVPPSDFHADGVND***************ILKQAPFLVPFTSRAKIFQSQLA****************FRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFDLS
************************RQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPIK*************TAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHP**********PANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQS************GVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFDLS
*************************QKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPI*********************EPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAG****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFFSGDPTTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPIKSSRESSMVSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFDLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1026 2.2.26 [Sep-21-2011]
Q8RWB81029 E3 ubiquitin-protein liga yes no 0.995 0.992 0.717 0.0
Q80U951083 Ubiquitin-protein ligase yes no 0.955 0.904 0.302 1e-106
Q153861083 Ubiquitin-protein ligase yes no 0.485 0.459 0.385 1e-102
Q7Z3V41068 Ubiquitin-protein ligase no no 0.550 0.529 0.358 1e-99
Q08CZ01072 Ubiquitin-protein ligase no no 0.565 0.541 0.356 2e-99
Q9ES341070 Ubiquitin-protein ligase no no 0.550 0.528 0.357 4e-99
Q9SCQ21142 E3 ubiquitin-protein liga no no 0.5 0.449 0.363 9e-95
Q1K9C41029 Probable E3 ubiquitin pro yes no 0.510 0.509 0.367 3e-91
P53119910 Probable E3 ubiquitin-pro yes no 0.379 0.427 0.405 2e-71
Q8GY233681 E3 ubiquitin-protein liga no no 0.372 0.103 0.394 6e-68
>sp|Q8RWB8|UPL6_ARATH E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1 Back     alignment and function desciption
 Score = 1551 bits (4016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 742/1034 (71%), Positives = 855/1034 (82%), Gaps = 13/1034 (1%)

Query: 1    MFFSGDPTTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKK 60
            MFFSGDP+TRKRVDLGGRS+KERD +KLLEQTR+ERNRRL  ++QN AA+KIQK FRG++
Sbjct: 1    MFFSGDPSTRKRVDLGGRSTKERDARKLLEQTRMERNRRLLQKQQNSAALKIQKFFRGRR 60

Query: 61   AMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRL 120
            +M IE SKVR  F  TYG + QNV+R CF P S+F RQ  FFF A+N  D  +LVETCRL
Sbjct: 61   SMAIERSKVRHDFCETYGNNCQNVDRHCFEPGSSFLRQFLFFFKAQNSGDFVILVETCRL 120

Query: 121  MKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEES 180
            ++ FV  SGD+V LF+G+DYSS+  LVDFRVKK AF CI+A+HQNR  L+DQL VTPEE+
Sbjct: 121  LQSFVDSSGDIVSLFSGLDYSSEHNLVDFRVKKLAFTCIEAIHQNRNRLRDQLLVTPEEA 180

Query: 181  NTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISS 240
            +    +L+EAV  L+D +LPW CK+VSYL +R VF L+RE++ T KES    +  G I S
Sbjct: 181  SISTAILMEAVSLLLDPKLPWVCKIVSYLQKRKVFKLVREMVTTAKESPRGKTMTGNILS 240

Query: 241  LERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIH 300
            LERVL LI+PHIG++PC C  +DPRWSF S ILTIP +W LFP +K VFA    SQHYIH
Sbjct: 241  LERVLILIVPHIGREPCCCTVVDPRWSFSSMILTIPLIWKLFPNLKVVFANPSLSQHYIH 300

Query: 301  QMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLL 360
            QMA C+Q    VLP E S E PGYACLLGN L+TA V LSQP+CS +M +D+A + TF L
Sbjct: 301  QMASCIQKDTCVLPMETSPEFPGYACLLGNTLDTANVVLSQPECSLDMAIDIALVATFFL 360

Query: 361  KALPPIKSSRESSM--VSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSG 418
            + LPP+KSS   S    SD+D    D+V   V+N+ LE+QIT+AIDSRFLLQLTNVLF  
Sbjct: 361  ETLPPVKSSEGESRQGSSDEDDMLIDDVPGLVLNKALEQQITNAIDSRFLLQLTNVLFRQ 420

Query: 419  FHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRC 478
              L    +DE   DKE  A+G A +FL+ AFNTLPLE IMT+LAYRTELV +LW+YMKRC
Sbjct: 421  VSLGMQSYDE---DKEALAIGTASSFLYAAFNTLPLERIMTILAYRTELVAVLWNYMKRC 477

Query: 479  HEIRKWPFLP----YLSGDAPGWLLPLAVFCPV--HMLTIVDNEEFYEQEKPLSLKDIRH 532
            HE +KW  +P    YL GDAPGWLLPL VFCPV  HML IVDNEEFYE+EKPLSL+DIR 
Sbjct: 478  HENQKWSSMPKLLAYLPGDAPGWLLPLVVFCPVYKHMLMIVDNEEFYEREKPLSLQDIRL 537

Query: 533  LIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDW 592
            LI+IL++ALW LLW+NP + PN GKSVS+    +K  P E IQ+R+  V SE+LSQLQDW
Sbjct: 538  LIIILKQALWQLLWVNPLTQPNTGKSVSND--LSKKNPIELIQNRMGIVVSELLSQLQDW 595

Query: 593  NNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVR 652
            NNR++F   SDF AD VN++FISQA ++GTRAN IL QAPFL+PFTSR KIF +QLA+ R
Sbjct: 596  NNRKQFTSSSDFQADSVNEYFISQAIMEGTRANYILMQAPFLIPFTSRVKIFTTQLATAR 655

Query: 653  QRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGG 712
            Q HGS G+F R+RFRIRRDHILEDAY+QMS +SE+DLR +IRVTFVNELGVEEAGIDGGG
Sbjct: 656  QSHGSQGIFARNRFRIRRDHILEDAYNQMSALSEDDLRSSIRVTFVNELGVEEAGIDGGG 715

Query: 713  IFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEG 772
            IFKDFME ITRAAFDVQYGLFKET+DH+LYPNPGSGMIHEQHLQFFHFLG LLAKAMFEG
Sbjct: 716  IFKDFMEKITRAAFDVQYGLFKETADHMLYPNPGSGMIHEQHLQFFHFLGSLLAKAMFEG 775

Query: 773  ILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEY 832
            ILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLK Y+ DIS+LELYFVILNNEY
Sbjct: 776  ILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKRYKGDISDLELYFVILNNEY 835

Query: 833  GEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDM 892
            GE+TEEELLPGG+++RVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLI K+WIDM
Sbjct: 836  GERTEEELLPGGQDMRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIPKEWIDM 895

Query: 893  FNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKF 952
            FNEHELQ+LISGS+DSLD DDLR NTNY GGYH+ HYVI+MFWEV+KSFS ENQKKFLKF
Sbjct: 896  FNEHELQVLISGSVDSLDIDDLRNNTNYAGGYHAGHYVIDMFWEVMKSFSTENQKKFLKF 955

Query: 953  VTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTK 1012
            VTGCSRGPLLGFKYLEP FCIQRAAGSAS E++DRLPTSATCMNLLKLPPY+SKE + TK
Sbjct: 956  VTGCSRGPLLGFKYLEPAFCIQRAAGSASNESVDRLPTSATCMNLLKLPPYQSKELLETK 1015

Query: 1013 LLYAINAEAGFDLS 1026
            L+YAI+AEAGFDLS
Sbjct: 1016 LMYAISAEAGFDLS 1029
Probable E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q80U95|UBE3C_MOUSE Ubiquitin-protein ligase E3C OS=Mus musculus GN=Ube3c PE=2 SV=2 Back     alignment and function description
>sp|Q15386|UBE3C_HUMAN Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UBE3C PE=1 SV=3 Back     alignment and function description
>sp|Q7Z3V4|UBE3B_HUMAN Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UBE3B PE=1 SV=3 Back     alignment and function description
>sp|Q08CZ0|UBE3B_XENTR Ubiquitin-protein ligase E3B OS=Xenopus tropicalis GN=ube3b PE=2 SV=1 Back     alignment and function description
>sp|Q9ES34|UBE3B_MOUSE Ubiquitin-protein ligase E3B OS=Mus musculus GN=Ube3b PE=2 SV=3 Back     alignment and function description
>sp|Q9SCQ2|UPL7_ARATH E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis thaliana GN=UPL7 PE=2 SV=1 Back     alignment and function description
>sp|Q1K9C4|YFK7_SCHPO Probable E3 ubiquitin protein ligase C167.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC167.07c PE=2 SV=1 Back     alignment and function description
>sp|P53119|HUL5_YEAST Probable E3 ubiquitin-protein ligase HUL5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HUL5 PE=1 SV=1 Back     alignment and function description
>sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1026
3594770931034 PREDICTED: E3 ubiquitin-protein ligase U 0.995 0.987 0.762 0.0
3594770951016 PREDICTED: E3 ubiquitin-protein ligase U 0.981 0.991 0.756 0.0
2241088021027 predicted protein [Populus trichocarpa] 0.994 0.993 0.753 0.0
2555564921067 ubiquitin-protein ligase, putative [Rici 0.974 0.937 0.766 0.0
3565559691031 PREDICTED: E3 ubiquitin-protein ligase U 0.995 0.990 0.728 0.0
3565217191026 PREDICTED: E3 ubiquitin-protein ligase U 0.996 0.996 0.726 0.0
2978303421029 hypothetical protein ARALYDRAFT_479191 [ 0.995 0.992 0.723 0.0
794052971029 E3 ubiquitin-protein ligase UPL6 [Arabid 0.995 0.992 0.717 0.0
3565649801026 PREDICTED: E3 ubiquitin-protein ligase U 0.996 0.996 0.720 0.0
3565217211012 PREDICTED: E3 ubiquitin-protein ligase U 0.984 0.998 0.719 0.0
>gi|359477093|ref|XP_003631936.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform 1 [Vitis vinifera] gi|296083205|emb|CBI22841.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1657 bits (4292), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 792/1039 (76%), Positives = 898/1039 (86%), Gaps = 18/1039 (1%)

Query: 1    MFFSGDPTTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKK 60
            MFFSGD +TRKRVDLGGRSSKERDRQKLLEQTRLERNRR +LR+QN AA++IQKCFRG+K
Sbjct: 1    MFFSGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRWWLRQQNSAALRIQKCFRGRK 60

Query: 61   AMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRL 120
            A+E EH+KVREQFF TYGRH QNV+R  FGP S F RQL FFF+ARNV D S LVETCRL
Sbjct: 61   AVEAEHAKVREQFFTTYGRHCQNVDRHSFGPDSEFLRQLLFFFDARNVGDFSALVETCRL 120

Query: 121  MKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEES 180
            +++FV++SGD V LFAG+DYSSK ALVD+RVK+ A+ACIQAVHQNR + K QL +T +E 
Sbjct: 121  LQNFVRDSGDAVNLFAGMDYSSKNALVDYRVKQLAYACIQAVHQNRNQFKGQLLMTSDEP 180

Query: 181  NTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISS 240
            ++P  LLLEAVV L+DS+LPW CK+V +LL+RN ++LLRE+++T KES+E +S+ GR+ S
Sbjct: 181  SSPTILLLEAVVMLLDSKLPWVCKIVGHLLQRNTYSLLREIVLTAKESVETYST-GRVPS 239

Query: 241  LERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIH 300
            LE +LT++I H+GQ  CICP IDPRWSF SQILTIPFLW LFPY+KEVF     S+HYIH
Sbjct: 240  LECLLTILISHVGQNHCICPIIDPRWSFSSQILTIPFLWALFPYLKEVFMRRGLSEHYIH 299

Query: 301  QMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLL 360
            QMALCVQNH NVLP ++S + PGYACLLGNILETA V  SQPDCS +M +D+AA+ TFLL
Sbjct: 300  QMALCVQNHTNVLPDDISADFPGYACLLGNILETASVFFSQPDCSLDMAIDIAAVMTFLL 359

Query: 361  KALPPIKSS----RESSMVSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLF 416
            +ALPP+KSS    +E+S   +D+M  GDE+ME V++RDLE+QI++AID RFLLQLTN LF
Sbjct: 360  QALPPMKSSNRESKENSSGGEDEMAVGDEIMEKVVSRDLEQQISNAIDPRFLLQLTNALF 419

Query: 417  SGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMK 476
             G  L+    +EGP D+EVAA+GAACAFLHV FN LPLE IMTVLAYRTELV LLW ++K
Sbjct: 420  GGISLINHLCEEGPDDREVAAIGAACAFLHVTFNILPLERIMTVLAYRTELVPLLWKFIK 479

Query: 477  RCHEIRKWPFL----PYLSGDAPGWLLPLAVFCPV--HMLTIVDNEEFYEQEKPLSLKDI 530
            RCHE +KW  L     YLSGD PGW LPLAVFCPV  HMLTIVDNEEFYEQEKPLSL DI
Sbjct: 480  RCHENQKWSSLSEQLAYLSGDMPGWQLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLSDI 539

Query: 531  RHLIVILREALWHLLWLNPTSHPNVGKSVSSPPP---ANKMLPAEAIQHRVSTVASEVLS 587
            R LIVILR+ALW LLW+NP   PN+ K    P P   +++  P E  Q RVS V +E+LS
Sbjct: 540  RCLIVILRQALWQLLWVNPAMPPNLMK----PAPEVTSHRGHPIEFTQQRVSIVTAELLS 595

Query: 588  QLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQ 647
            QLQDWNNRR+F PPS FHAD VN++FISQA I+ TRA  ILKQAPFLVPFTSR KIF SQ
Sbjct: 596  QLQDWNNRRQFAPPSYFHADAVNEYFISQAVIENTRAYTILKQAPFLVPFTSRVKIFTSQ 655

Query: 648  LASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAG 707
            LA+ RQR GSH VFTR+RFRIRRDHILEDA++Q+S +SE+DLRG IR++FVNE GVEEAG
Sbjct: 656  LAAARQRDGSHSVFTRNRFRIRRDHILEDAFNQLSVLSEDDLRGLIRISFVNEFGVEEAG 715

Query: 708  IDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAK 767
            IDGGGIFKDFMENITRAAFDVQYGLFKET+DHLLYPNPGSGMIHEQHLQFFHFLG +L K
Sbjct: 716  IDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGTVLGK 775

Query: 768  AMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVI 827
            AMFEGILVDIPFATFFLSKLKQK+NYLNDLPSLDPELYRHLIFLKH+E D+SELELYFVI
Sbjct: 776  AMFEGILVDIPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKHFEGDLSELELYFVI 835

Query: 828  LNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQK 887
            +NNEYGEQTEEELLPGGKNIRVTNENVITFIHL++NHRLNFQIRQQS+HFLRGFQQLIQ+
Sbjct: 836  VNNEYGEQTEEELLPGGKNIRVTNENVITFIHLIANHRLNFQIRQQSTHFLRGFQQLIQR 895

Query: 888  DWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQK 947
            DWI+MF+EHELQLLISGSLD LD DDLR NTNY GGYHSEHYVIE FWEVLKSF+LENQ 
Sbjct: 896  DWIEMFDEHELQLLISGSLDGLDVDDLRSNTNYAGGYHSEHYVIETFWEVLKSFTLENQM 955

Query: 948  KFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKE 1007
            KFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKE
Sbjct: 956  KFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKE 1015

Query: 1008 QMSTKLLYAINAEAGFDLS 1026
            QM+TKLLYAINA+AGFDLS
Sbjct: 1016 QMATKLLYAINADAGFDLS 1034

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359477095|ref|XP_003631937.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224108802|ref|XP_002314972.1| predicted protein [Populus trichocarpa] gi|222864012|gb|EEF01143.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255556492|ref|XP_002519280.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223541595|gb|EEF43144.1| ubiquitin-protein ligase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356555969|ref|XP_003546300.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like [Glycine max] Back     alignment and taxonomy information
>gi|356521719|ref|XP_003529499.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|297830342|ref|XP_002883053.1| hypothetical protein ARALYDRAFT_479191 [Arabidopsis lyrata subsp. lyrata] gi|297328893|gb|EFH59312.1| hypothetical protein ARALYDRAFT_479191 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|79405297|ref|NP_188346.2| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] gi|334185408|ref|NP_001189915.1| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] gi|75247591|sp|Q8RWB8.1|UPL6_ARATH RecName: Full=E3 ubiquitin-protein ligase UPL6; Short=Ubiquitin-protein ligase 6 gi|20260606|gb|AAM13201.1| unknown protein [Arabidopsis thaliana] gi|37202000|gb|AAQ89615.1| At3g17205 [Arabidopsis thaliana] gi|332642397|gb|AEE75918.1| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] gi|332642399|gb|AEE75920.1| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356564980|ref|XP_003550723.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356521721|ref|XP_003529500.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform 2 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1026
TAIR|locus:20879391029 UPL6 "AT3G17205" [Arabidopsis 0.995 0.992 0.691 0.0
UNIPROTKB|Q5W7241030 OSJNBa0017J22.6 "Os05g0159000 0.996 0.992 0.588 0.0
UNIPROTKB|E1BZA81086 UBE3C "Uncharacterized protein 0.393 0.372 0.452 1.7e-103
UNIPROTKB|F1NZJ61084 UBE3C "Uncharacterized protein 0.393 0.372 0.452 1.7e-103
UNIPROTKB|F1N7031085 UBE3C "Uncharacterized protein 0.393 0.372 0.450 1.9e-98
UNIPROTKB|F1PB351088 UBE3C "Uncharacterized protein 0.393 0.371 0.443 3e-98
UNIPROTKB|Q153861083 UBE3C "Ubiquitin-protein ligas 0.393 0.373 0.443 3.8e-98
MGI|MGI:21409981083 Ube3c "ubiquitin protein ligas 0.393 0.373 0.445 4.9e-98
RGD|15599861083 Ube3c "ubiquitin protein ligas 0.393 0.373 0.443 7e-97
FB|FBgn00359531078 CG5087 [Drosophila melanogaste 0.522 0.497 0.339 4.8e-96
TAIR|locus:2087939 UPL6 "AT3G17205" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3716 (1313.2 bits), Expect = 0., P = 0.
 Identities = 715/1034 (69%), Positives = 823/1034 (79%)

Query:     1 MFFSGDPTTRKRVDLGGRSSKERDRQKLLEQTXXXXXXXXXXXXQNHAAIKIQKCFRGKK 60
             MFFSGDP+TRKRVDLGGRS+KERD +KLLEQT            QN AA+KIQK FRG++
Sbjct:     1 MFFSGDPSTRKRVDLGGRSTKERDARKLLEQTRMERNRRLLQKQQNSAALKIQKFFRGRR 60

Query:    61 AMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAXXXXXXXXXNARNVSDISVLVETCRL 120
             +M IE SKVR  F  TYG + QNV+R CF P S+          A+N  D  +LVETCRL
Sbjct:    61 SMAIERSKVRHDFCETYGNNCQNVDRHCFEPGSSFLRQFLFFFKAQNSGDFVILVETCRL 120

Query:   121 MKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEES 180
             ++ FV  SGD+V LF+G+DYSS+  LVDFRVKK AF CI+A+HQNR  L+DQL VTPEE+
Sbjct:   121 LQSFVDSSGDIVSLFSGLDYSSEHNLVDFRVKKLAFTCIEAIHQNRNRLRDQLLVTPEEA 180

Query:   181 NTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISS 240
             +    +L+EAV  L+D +LPW CK+VSYL +R VF L+RE++ T KES    +  G I S
Sbjct:   181 SISTAILMEAVSLLLDPKLPWVCKIVSYLQKRKVFKLVREMVTTAKESPRGKTMTGNILS 240

Query:   241 LERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIH 300
             LERVL LI+PHIG++PC C  +DPRWSF S ILTIP +W LFP +K VFA    SQHYIH
Sbjct:   241 LERVLILIVPHIGREPCCCTVVDPRWSFSSMILTIPLIWKLFPNLKVVFANPSLSQHYIH 300

Query:   301 QMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLL 360
             QMA C+Q    VLP E S E PGYACLLGN L+TA V LSQP+CS +M +D+A + TF L
Sbjct:   301 QMASCIQKDTCVLPMETSPEFPGYACLLGNTLDTANVVLSQPECSLDMAIDIALVATFFL 360

Query:   361 KALPPIKSSRESSMV--SDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSG 418
             + LPP+KSS   S    SD+D    D+V   V+N+ LE+QIT+AIDSRFLLQLTNVLF  
Sbjct:   361 ETLPPVKSSEGESRQGSSDEDDMLIDDVPGLVLNKALEQQITNAIDSRFLLQLTNVLFRQ 420

Query:   419 FHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRC 478
               L    +DE   DKE  A+G A +FL+ AFNTLPLE IMT+LAYRTELV +LW+YMKRC
Sbjct:   421 VSLGMQSYDE---DKEALAIGTASSFLYAAFNTLPLERIMTILAYRTELVAVLWNYMKRC 477

Query:   479 HEIRKWPFLP----YLSGDAPGWLLPLAVFCPV--HMLTIVDNEEFYEQEKPLSLKDIRH 532
             HE +KW  +P    YL GDAPGWLLPL VFCPV  HML IVDNEEFYE+EKPLSL+DIR 
Sbjct:   478 HENQKWSSMPKLLAYLPGDAPGWLLPLVVFCPVYKHMLMIVDNEEFYEREKPLSLQDIRL 537

Query:   533 LIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDW 592
             LI+IL++ALW LLW+NP + PN GKSVS+    +K  P E IQ+R+  V SE+LSQLQDW
Sbjct:   538 LIIILKQALWQLLWVNPLTQPNTGKSVSND--LSKKNPIELIQNRMGIVVSELLSQLQDW 595

Query:   593 NNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVR 652
             NNR++F   SDF AD VN++FISQA ++GTRAN IL QAPFL+PFTSR KIF +QLA+ R
Sbjct:   596 NNRKQFTSSSDFQADSVNEYFISQAIMEGTRANYILMQAPFLIPFTSRVKIFTTQLATAR 655

Query:   653 QRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGG 712
             Q HGS G+F R+RFRIRRDHILEDAY+QMS +SE+DLR +IRVTFVNELGVEEAGIDGGG
Sbjct:   656 QSHGSQGIFARNRFRIRRDHILEDAYNQMSALSEDDLRSSIRVTFVNELGVEEAGIDGGG 715

Query:   713 IFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEG 772
             IFKDFME ITRAAFDVQYGLFKET+DH+LYPNPGSGMIHEQHLQFFHFLG LLAKAMFEG
Sbjct:   716 IFKDFMEKITRAAFDVQYGLFKETADHMLYPNPGSGMIHEQHLQFFHFLGSLLAKAMFEG 775

Query:   773 ILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEY 832
             ILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLK Y+ DIS+LELYFVILNNEY
Sbjct:   776 ILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKRYKGDISDLELYFVILNNEY 835

Query:   833 GEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDM 892
             GE+TEEELLPGG+++RVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLI K+WIDM
Sbjct:   836 GERTEEELLPGGQDMRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIPKEWIDM 895

Query:   893 FNEHEXXXXXXXXXXXXXXXXXRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKF 952
             FNEHE                 R NTNY GGYH+ HYVI+MFWEV+KSFS ENQKKFLKF
Sbjct:   896 FNEHELQVLISGSVDSLDIDDLRNNTNYAGGYHAGHYVIDMFWEVMKSFSTENQKKFLKF 955

Query:   953 VTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTK 1012
             VTGCSRGPLLGFKYLEP FCIQRAAGSAS E++DRLPTSATCMNLLKLPPY+SKE + TK
Sbjct:   956 VTGCSRGPLLGFKYLEPAFCIQRAAGSASNESVDRLPTSATCMNLLKLPPYQSKELLETK 1015

Query:  1013 LLYAINAEAGFDLS 1026
             L+YAI+AEAGFDLS
Sbjct:  1016 LMYAISAEAGFDLS 1029
GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IBA
GO:0005622 "intracellular" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006464 "cellular protein modification process" evidence=IEA;ISS
GO:0016881 "acid-amino acid ligase activity" evidence=IEA
GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA
GO:0000151 "ubiquitin ligase complex" evidence=ISS
GO:0016567 "protein ubiquitination" evidence=ISS
UNIPROTKB|Q5W724 OSJNBa0017J22.6 "Os05g0159000 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|E1BZA8 UBE3C "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NZJ6 UBE3C "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1N703 UBE3C "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PB35 UBE3C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q15386 UBE3C "Ubiquitin-protein ligase E3C" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2140998 Ube3c "ubiquitin protein ligase E3C" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1559986 Ube3c "ubiquitin protein ligase E3C" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0035953 CG5087 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RWB8UPL6_ARATH6, ., 3, ., 2, ., -0.71760.99510.9922yesno
Q80U95UBE3C_MOUSE6, ., 3, ., 2, ., -0.30240.95510.9048yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.20.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00033190001
SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (1036 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1026
cd00078352 cd00078, HECTc, HECT domain; C-terminal catalytic 1e-152
smart00119328 smart00119, HECTc, Domain Homologous to E6-AP Carb 1e-117
COG5021872 COG5021, HUL4, Ubiquitin-protein ligase [Posttrans 1e-100
pfam00632298 pfam00632, HECT, HECT-domain (ubiquitin-transferas 5e-97
>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information 
 Score =  455 bits (1174), Expect = e-152
 Identities = 172/363 (47%), Positives = 226/363 (62%), Gaps = 15/363 (4%)

Query: 665  RFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRA 724
            +  +RRD ILEDA  Q+S +S  DL+  + V FV E      GID GG+ ++F   +++ 
Sbjct: 2    KITVRRDRILEDALRQLSKVSSSDLKKVLEVEFVGE-----EGIDAGGVTREFFTLVSKE 56

Query: 725  AFDVQYGLFKETSD--HLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATF 782
             F+  YGLF+ T D   LLYPNP S    E HL+ F FLG LL KA++EG L+D+PF+  
Sbjct: 57   LFNPSYGLFRYTPDDSGLLYPNPSSFA-DEDHLKLFRFLGRLLGKALYEGRLLDLPFSRA 115

Query: 783  FLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVI-LNNEYGEQTEEELL 841
            F  KL  K   L DL  LDPELY+ L  L   + D  +LEL F I L++ +G     EL 
Sbjct: 116  FYKKLLGKPLSLEDLEELDPELYKSLKELLDNDGDEDDLELTFTIELDSSFGGAVTVELK 175

Query: 842  PGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLL 901
            PGG++I VTNEN   ++ L  ++RLN  I +Q   F  GF ++I ++ + +F   EL+LL
Sbjct: 176  PGGRDIPVTNENKEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELL 235

Query: 902  ISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPL 961
            I GS D +D +DL++NT Y GGY S+   I+ FWEVL+SF+ E +KKFL+FVTG SR P+
Sbjct: 236  ICGSED-IDLEDLKKNTEYKGGYSSDSPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPV 294

Query: 962  LGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEA 1021
             GF  L P F I+R          DRLPT+ TC NLLKLPPY SKE +  KLLYAIN  A
Sbjct: 295  GGFADLNPKFTIRRV-----GSPDDRLPTAHTCFNLLKLPPYSSKEILREKLLYAINEGA 349

Query: 1022 GFD 1024
            GF 
Sbjct: 350  GFG 352

It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains. Length = 352
>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1026
KOG44271096 consensus E3 ubiquitin protein ligase [Posttransla 100.0
KOG09421001 consensus E3 ubiquitin protein ligase [Posttransla 100.0
KOG0941850 consensus E3 ubiquitin protein ligase [Posttransla 100.0
COG5021872 HUL4 Ubiquitin-protein ligase [Posttranslational m 100.0
cd00078352 HECTc HECT domain; C-terminal catalytic domain of 100.0
smart00119336 HECTc Domain Homologous to E6-AP Carboxyl Terminus 100.0
KOG0939720 consensus E3 ubiquitin-protein ligase/Putative ups 100.0
KOG0170621 consensus E3 ubiquitin protein ligase [Posttransla 100.0
PF00632317 HECT: HECT-domain (ubiquitin-transferase); InterPr 100.0
KOG0940358 consensus Ubiquitin protein ligase RSP5/NEDD4 [Pos 100.0
KOG09433015 consensus Predicted ubiquitin-protein ligase/hyper 100.0
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 97.61
smart0001526 IQ Short calmodulin-binding motif containing conse 97.02
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-175  Score=1471.18  Aligned_cols=957  Identities=31%  Similarity=0.508  Sum_probs=802.8

Q ss_pred             CCCCcccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc---cCCchhh
Q 001698           18 RSSKERDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQ---CFGPQSA   94 (1026)
Q Consensus        18 ~s~~e~~r~~lL~qar~eRe~R~~~Rrr~~aAi~IQ~~~Rg~~~r~~~~~~~R~efd~~~~~~~~~~~~~---~~~~~~~   94 (1026)
                      .+..+++|++||+|+++|||+|+.+|||++||++||++||||++||+++.+++++||.++..+....++.   ...|.-+
T Consensus         2 ~~~~q~sra~fl~k~~qeREer~~qrrr~~aa~~iq~~lrsyl~Rkk~~~~I~~e~d~~f~~d~~d~~~~~erv~~~~l~   81 (1096)
T KOG4427|consen    2 FSSGQISRAAFLAKVSQEREERSYQRRREAAALFIQRVLRSYLVRKKAQIEIQEEFDNLFSCDSVDLTKVLERVARPFLP   81 (1096)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHhhhHHH
Confidence            3444578999999999999999999999999999999999999999999999999999998876432221   1222335


Q ss_pred             hhhhheEEEeccccccHHHHHHHHHHHHHHhhhcCCccccccccccccchhh-HHHHHHHHHHHHHHHHHhhhhhhcccc
Q 001698           95 FFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRAL-VDFRVKKFAFACIQAVHQNRKELKDQL  173 (1026)
Q Consensus        95 ~lR~llFf~~~~~~~D~~rL~~lc~~ll~s~~~~~~~~~~~~~~~~~~~~~~-~~~qiKkll~lC~~~L~~~~~~~~~~~  173 (1026)
                      ++|.+++.++.++ .|.+||+++||+|+.+|+++++.+.+||++++++|+.. |+.|||+++++|++.|.+++++...+.
T Consensus        82 var~ll~q~r~ie-~~~e~~~~iCr~il~smds~n~~~~sfvsl~l~ke~sk~w~~qik~ils~c~~lL~eln~Er~ad~  160 (1096)
T KOG4427|consen   82 VARSLLVQHRKIE-AREERLEQICRKILLSMDSENDQKYSFVSLALGKEDSKTWICQIKRILSLCSFLLTELNPERIADS  160 (1096)
T ss_pred             HHHHHHHHHHHHH-hHHHHHHHHHHHHHHhhcCCCCcceeeeeehhcccchHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            7899999888775 44899999999999999999999999999999999765 599999999999999998666433322


Q ss_pred             cCCCCCCCCchHHHHHHHHHhhcCCchh------------------hHHHHHHHHhcchHHHHHHHHHhcCCCccccccc
Q 001698          174 FVTPEESNTPPTLLLEAVVFLIDSRLPW------------------TCKVVSYLLERNVFTLLRELIVTGKESMEIHSSY  235 (1026)
Q Consensus       174 ~~~~~~~~~~~~~~l~~lv~l~~~~~~w------------------~~~i~~yL~q~g~y~~Lr~ll~~~~~~~~~~~~~  235 (1026)
                      .        ...++|+++++|||+++ |                  |++||||++|+|||+.+|.+|.++..+.++....
T Consensus       161 ~--------~~alll~~livfTdpks-Wkilrn~n~e~lqtamn~ic~~i~gh~~q~~~Ys~mr~~l~~~t~~~~~~l~~  231 (1096)
T KOG4427|consen  161 I--------VNALLLHILIVFTDPKS-WKILRNENFEDLQTAMNIICQNIMGHLCQHGFYSAMRRYLKRGTKRTDPRLVI  231 (1096)
T ss_pred             H--------HHHHHHHeeeEEeCCcc-eeehhccchhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCCCcceee
Confidence            2        46799999999999999 9                  4889999999999999999999999877763333


Q ss_pred             CCcchHHHHHHhhhccccCCCcccCCCCCcc------chhhhhcccchhhhhhhh----HHHHHhhcCCchhhHHHHHHH
Q 001698          236 GRISSLERVLTLIIPHIGQKPCICPNIDPRW------SFFSQILTIPFLWHLFPY----IKEVFATGRTSQHYIHQMALC  305 (1026)
Q Consensus       236 ~~~~~l~~ll~l~~~~~~~~~~~~~~~~~~~------~f~~~IlsiP~l~~~~p~----~~~~~~~~~l~~~~~~~~~~~  305 (1026)
                      .   ++.+       +|+.  +..|..++++      .|.++|||||+|..|+|.    ....+.++.+..+.++    +
T Consensus       232 ~---Tl~a-------~~sl--~~rpvk~~nfsd~l~~~fv~~IltvPaLv~hL~~~~~q~le~~ss~~l~~K~l~----~  295 (1096)
T KOG4427|consen  232 T---TLAA-------TFSL--RLRPVKQPNFSDNLVEEFVSLILTVPALVCHLPSALPQALEHLSSLMLLDKILN----I  295 (1096)
T ss_pred             e---ehhh-------hhhh--ccccccCCchHHHHHHHHHHHHhchhHHHHhcchhhHHHHHHHHHHHHHHHHHH----H
Confidence            2   2222       2222  2345555554      599999999999888774    4777777888888876    4


Q ss_pred             HhhhcccCCccccCCcchHHHHHHHHHHhhhhhcCCCCCcccchhhHHHHHHHHHhhCCCcccC--Cccc---------C
Q 001698          306 VQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPIKSS--RESS---------M  374 (1026)
Q Consensus       306 l~~~~~~~~~~~s~~~p~~~~lL~Nl~~l~~~~l~~~~~~~~~~~~~v~v~~~lL~~l~~~~~~--~~s~---------~  374 (1026)
                      +.+......-+.+.++|+.+|+|||++++++.  ++.+...+..-+++..++..|.+|-.++.+  ++++         -
T Consensus       296 l~d~~~~ee~~tsme~~~~l~llgNiv~la~i--s~~~~e~~~~~~f~~~~~~sl~~~~e~tv~~~tk~~l~~wH~vlg~  373 (1096)
T KOG4427|consen  296 LRDMENSEEQSTSMEGPSVLWLLGNIVHLATI--SETDLEDELESNFYVLYTHSLVTLAENTVSQVTKVGLTDWHPVLGW  373 (1096)
T ss_pred             HHhhHhHHHhhcCCcccHhHHHHhhhheeeec--CcccccccccccchhhhHHHHHHHHHHHhhcccccceeeeehhhcc
Confidence            44443333235578889999999999999982  433333333335777888888888555433  2222         1


Q ss_pred             CCCCCcccCCCCccchhhHhHHHHHHHHhhHHHHHHHHHHHhhhh----------------------------cccCCC-
Q 001698          375 VSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSGF----------------------------HLLRGP-  425 (1026)
Q Consensus       375 ~~~ddd~~~~~~~~~~~~~~l~~ql~~~~~~~~l~~l~~~l~~~v----------------------------~~~~~~-  425 (1026)
                      .+...|.+.++.|.     .+++|+.-+|+.+..+-+...+....                            ++.... 
T Consensus       374 ~s~~~ek~~n~~i~-----~v~~q~~mlw~~~likll~~dile~~~las~~~~~~sk~s~~~~l~Is~l~sr~lrk~~~~  448 (1096)
T KOG4427|consen  374 TSNETEKGNNVKIS-----LVEKQLPMLWQWRLIKLLFGDILEIRVLASKDASTSSKKSPETLLDISRLLSRALRKSCVM  448 (1096)
T ss_pred             ccCCCCCccchhHH-----HHHHHHHHHhhhhHHHHHhhhHHHhhhhccccccccCCCCCcchhHHHHHHHHHHHHhccc
Confidence            45666666666665     89999999999744444433322211                            110000 


Q ss_pred             ---------------CCCCCCchhhhHHHHHHHHHHHhhhhhhh--HHHHHHhhhhhhHHHHHHHHHHHhhccccCCC--
Q 001698          426 ---------------HDEGPGDKEVAAVGAACAFLHVAFNTLPL--ECIMTVLAYRTELVQLLWHYMKRCHEIRKWPF--  486 (1026)
Q Consensus       426 ---------------~~~~~~~~~~~~v~~~c~~~~~~~~~~~~--~~il~~Laf~~~ll~~lW~~i~~~~~~~~~~~--  486 (1026)
                                     ++--.+++++..++.+|.+|+++++|+.+  ..++++|+|.+.+++++|.+|+..+++.+-.+  
T Consensus       449 ~~~l~~v~ss~~~~~~~k~~s~~~v~lv~~iC~~y~aslnTl~~mr~~iltgl~~~dnll~~lW~~i~e~G~~~G~~~gs  528 (1096)
T KOG4427|consen  449 GPVLGPVPSSNMLSFCPKWNSSAEVLLVENICTAYDASLNTLWQMRLPILTGLCYLDNLLVNLWVNILELGPSPGPQPGS  528 (1096)
T ss_pred             CCccCCCccchhhhccccccCcccceehhhhhhHHHhhhhhHHHhhhHHhhcchhhhhhHHHHHHHHHHhCCCCCCCCCc
Confidence                           01113678899999999999999999875  57999999999999999999999998877221  


Q ss_pred             ----------CCC---CCCC---CCccchhhhhhhhh--hhhcccchhhhhccCCCCCHHHHHHHHHHHHHHHHHHhhcC
Q 001698          487 ----------LPY---LSGD---APGWLLPLAVFCPV--HMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLN  548 (1026)
Q Consensus       487 ----------l~~---~~~d---~~~~llpl~lfc~l--h~l~ilddeef~~~~~p~~l~el~~l~~~Lk~~~~~~l~~~  548 (1026)
                                ++.   +.++   +....++|.|||++  |+++|+||+|||+.|.||+++++..|+.|||+++|+++|..
T Consensus       529 ~~~~~~~k~~~ev~~~l~s~~~~sk~~tamL~LFcdc~ahlitILDd~e~yekq~pF~lee~~~i~s~lN~~vyk~i~~g  608 (1096)
T KOG4427|consen  529 GQVNESTKDVLEVETLLGSPTGISKPVTAMLMLFCDCYAHLITILDDIEFYEKQVPFKLEELVRIASFLNTFVYKGIWDG  608 (1096)
T ss_pred             cccchhHHHHHhHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHcc
Confidence                      111   1111   22367789999999  99999999999999999999999999999999999999974


Q ss_pred             CCCCCCCCCccCCCCCCCCCCchHHHHhhhHHHHHHHHHHHhHhhccCcCCCCCCCCCCCcch-hhhhhhhccccchhHh
Q 001698          549 PTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVND-FFISQATIDGTRANEI  627 (1026)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~r~~f~p~~~f~~~~~~~-~~~~~~~~~~~~~~~i  627 (1026)
                      ....+             +    + ....++.+++++|..||+|||||+|+|+++|+++++.. .|....+....++..+
T Consensus       609 ~v~ea-------------k----~-~t~~lF~S~h~~l~vLYeRDcRr~Fta~d~WL~pevkPs~f~~e~ek~~~~a~ll  670 (1096)
T KOG4427|consen  609 TVPEA-------------K----Q-LTTGLFDSAHRLLHVLYERDCRRPFTASDHWLIPEVKPSAFAAELEKVLPTADLL  670 (1096)
T ss_pred             cchhh-------------h----h-HHHHHHHHHHHHHHHHHHhccCCCCCcchhhcCCCCChhHHHHHHHhhcccceeE
Confidence            33211             1    1 11228899999999999999999999999999988754 3444444455667788


Q ss_pred             hhcCCcccchhchHHHHHHHHHHHHhhcCCC----CCccc-eeEEEcCCchHHHHHHHHhcCCccccCCcEEEEEEeccC
Q 001698          628 LKQAPFLVPFTSRAKIFQSQLASVRQRHGSH----GVFTR-SRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELG  702 (1026)
Q Consensus       628 l~~~Pf~~pf~~rv~~f~~~~~~~~~~~~~~----~~~~~-~~i~VrR~~ileda~~~l~~~~~~~lk~~l~V~F~~e~G  702 (1026)
                      +..+|+++|+++||.+||.++.+++...+..    ....+ ..|+|||++|+||+|+||++.+...+|+.|+|+|+||+|
T Consensus       671 l~~mpHviP~edRv~lFR~fVqkdKa~~~lv~ts~a~p~~~t~IvvrR~rivEDGf~qL~~l~~~alKs~IrVkFVNeqG  750 (1096)
T KOG4427|consen  671 LTKMPHVIPHEDRVLLFREFVQKDKASRGLVETSDASPARSTEIVVRRGRIVEDGFQQLNSLGSPALKSVIRVKFVNEQG  750 (1096)
T ss_pred             eccCCcccChHHHHHHHHHHHhhhHHhhcccccccCCccceeEEEEEcccchhhHHHHHHhccchhhhceEEEEEecccC
Confidence            9999999999999999999998887654421    12222 589999999999999999999988999999999999999


Q ss_pred             cccccccCCCccHHHHHHHHHHhhcccCCCceecC-CCceeeCCCCCcchhhHHHHHHHHHHHHHHHHHcCCcccccCcH
Q 001698          703 VEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETS-DHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFAT  781 (1026)
Q Consensus       703 ~~E~giD~GG~~rEff~~l~~e~~~p~~glF~~~~-~~~l~pnp~s~~~~~~~l~~f~flG~llg~Al~~~~~l~l~f~~  781 (1026)
                      ++|||||.|||+|||++++.+.+|||+++||..|+ |+.+||+|.|+ .+++|+++|+|+||++|||+|+|+++|+||++
T Consensus       751 l~EAGiDqdGvfKEFLeeiiKkvFdp~lnLFstTs~d~~LyPSPts~-~~en~lqlfeFvGrmlGKAvYEGIvvDv~fa~  829 (1096)
T KOG4427|consen  751 LDEAGIDQDGVFKEFLEEIIKKVFDPELNLFSTTSTDRRLYPSPTSY-HHENHLQLFEFVGRMLGKAVYEGIVVDVPFAS  829 (1096)
T ss_pred             CcccccCccchHHHHHHHHHHHHhcccccccccCCCCceecCCchhh-hhhchhHHHHHHHHHHHHHHhcceEEecccHH
Confidence            99999999999999999999999999999999998 99999999996 68999999999999999999999999999999


Q ss_pred             HHHHhhhccCC--CCCCCCCCCHHhhhhhHHhhcccccccccceeEEEEeccCCcceeeeccCCCcccccChhhHHHHHH
Q 001698          782 FFLSKLKQKYN--YLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIH  859 (1026)
Q Consensus       782 ~f~k~Ll~~~~--~l~DL~~~Dp~l~~sL~~l~~~~~dv~~l~L~F~~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYV~  859 (1026)
                      +|+.+|+|...  .+|+|.++|||+||||.++|+|+||+.||+|+|+++++..|+..++||+|||+.|+||++||.+|||
T Consensus       830 vflsqlLG~~~~s~~DELs~LDpElYrnLtfvKhYdgd~~dL~LtfSvdedfmGkis~~eL~PgGkt~sVtneNKi~YIH  909 (1096)
T KOG4427|consen  830 VFLSQLLGRHSLSFIDELSSLDPELYRNLTFVKHYDGDLKDLCLTFSVDEDFMGKISTIELKPGGKTISVTNENKIQYIH  909 (1096)
T ss_pred             HHHHHHhcccchhhhhhccccCHHHHhhhhHHHhhcccHhhheeeeEechhhccceeEEEeccCCcceeccccchHHHHH
Confidence            99999999876  7999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhHhchhHHHHHHHHHHhhccccchhHHhhccHHHHHHhHcCCCCCCCHHHHhhcccccCccCCCchHHHHHHHHHh
Q 001698          860 LVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLK  939 (1026)
Q Consensus       860 ~~~~~~l~~~i~~q~~af~~Gf~~vi~~~~l~~F~~~EL~~li~G~~~~id~~dl~~~t~y~~gy~~~~~~I~~FW~vl~  939 (1026)
                      .||+|++|++|++|+.||.+||+++|.++||++|+|.|||.||+|...+||++||++||+|.|||+.+|++|+|||+++.
T Consensus       910 ~MA~~rmnrqi~eqt~Af~rG~rsii~P~WlslFs~~elq~LiSG~nsdiDl~DLkrnt~Y~GGfh~shrvIkwlWdIl~  989 (1096)
T KOG4427|consen  910 AMAHFRMNRQIVEQTNAFYRGFRSIISPEWLSLFSPPELQRLISGDNSDIDLDDLKRNTKYYGGFHDSHRVIKWLWDILA  989 (1096)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHccCcHHHHHHhcCCCCCCCHHHHHhcCEeecccCCcchhHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             c-CCHHHHhhcceeecCCCCCCCCCcccCCCceeEeecCCCCC-------------------CcCCCCCceeccccCeec
Q 001698          940 S-FSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSAS-------------------EEALDRLPTSATCMNLLK  999 (1026)
Q Consensus       940 ~-~s~eer~~fL~FvTG~~r~P~~Gf~~L~p~f~i~~~~~~~~-------------------~~~~~~LP~A~TCfn~L~  999 (1026)
                      . |++|||+.||||||+|||+|+.||++|+|||.|+++..+++                   +++.+|||||+||||+||
T Consensus       990 ~dFt~eERklfLKFVTSCSrpPlLGFayLePpFsIrCVeVSdDqd~gdtiGSVvRGFfaiRKg~~~~RLPTaSTCfNlLK 1069 (1096)
T KOG4427|consen  990 GDFTPEERKLFLKFVTSCSRPPLLGFAYLEPPFSIRCVEVSDDQDTGDTIGSVVRGFFAIRKGQPVERLPTASTCFNLLK 1069 (1096)
T ss_pred             ccCChHHHHHHHHHHhhcCCCccccccccCCCceEEEEEecCcccchhhHhHHHHhhhhhhcCCccccCCchhhHHHhhh
Confidence            5 99999999999999999999999999999999997653322                   367899999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCCccCC
Q 001698         1000 LPPYRSKEQMSTKLLYAINAEAGFDLS 1026 (1026)
Q Consensus      1000 LP~Yss~e~l~ekL~~AI~~~~GF~Ls 1026 (1026)
                      ||.|+.+.+|||||+|||++++||+||
T Consensus      1070 LPnY~kkStlreKLrYAIssntGFELS 1096 (1096)
T KOG4427|consen 1070 LPNYKKKSTLREKLRYAISSNTGFELS 1096 (1096)
T ss_pred             CCCcchhHHHHHHHHHHhhcCCCcccC
Confidence            999999999999999999999999998

>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>KOG0939 consensus E3 ubiquitin-protein ligase/Putative upstream regulatory element binding protein [Posttranslational modification, protein turnover, chaperones; Transcription] Back     alignment and domain information
>KOG0170 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' [] Back     alignment and domain information
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1026
3h1d_A405 Structure Of The Huwe1 Hect Domain Length = 405 2e-48
3g1n_A388 Catalytic Domain Of The Human E3 Ubiquitin-Protein 4e-47
2xbb_A386 Nedd4 Hect:ub Complex Length = 386 8e-45
3jvz_C385 E2~ubiquitin-Hect Length = 385 9e-44
3jw0_C385 E2~ubiquitin-Hect Length = 385 9e-44
2oni_A392 Catalytic Domain Of The Human Nedd4-Like E3 Ligase 7e-43
3tug_A398 Crystal Structure Of The Hect Domain Of Itch E3 Ubi 2e-42
1nd7_A374 Conformational Flexibility Underlies Ubiquitin Liga 1e-41
1c4z_A358 Structure Of E6ap: Insights Into Ubiquitination Pat 6e-40
1zvd_A380 Regulation Of Smurf2 Ubiquitin Ligase Activity By A 3e-38
3olm_A429 Structure And Function Of A Ubiquitin Binding Site 7e-38
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain Length = 405 Back     alignment and structure 
Iteration: 1

 Score =  191 bits (484), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 134/407 (32%), Positives = 203/407 (49%), Gaps = 22/407 (5%)
Query: 626  EILKQAPFLVPFTSRAKIFQSQLASVRQ--RHGSHGVFTRSRFRIRRDHILEDAYSQMST 683
            E+L Q P +  F  + K F+ +L  + +  R     V       +RRDH+ ED+Y ++  
Sbjct: 15   EVLFQGPHM-DFDVKRKYFRQELERLDEGLRKEDMAV------HVRRDHVFEDSYRELHR 67
Query: 684  MSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKET-SDHLLY 742
             S E+++  + + F  E      G D GG+ +++   I+R  F+  Y LF+ +  D + Y
Sbjct: 68   KSPEEMKNRLYIVFEGE-----EGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTY 122
Query: 743  PNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDP 802
                S   +  HL +F F+G ++AKA+++  L++  F   F   +  K     D+ S D 
Sbjct: 123  TINPSSHANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDY 182
Query: 803  ELYRHLIFLKHYEADISEL--ELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHL 860
              Y+ L++L   E D+S L  +L F     E+G     +L P G NI VT EN   ++HL
Sbjct: 183  HFYQGLVYL--LENDVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHL 240
Query: 861  VSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHEXXXXXXXXXXXXXXXXXRQNTNY 920
            V   R+   IR+Q + FL GF ++I K  I +F E E                 + NT Y
Sbjct: 241  VCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQE-LELLISGLPTIDIDDLKSNTEY 299
Query: 921  VGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSA 980
               Y S    I+ FW  L+SF   ++ KFL+FVTG S+ PL GF  LE +  IQ+     
Sbjct: 300  -HKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHR 358
Query: 981  SEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAIN-AEAGFDLS 1026
             + + DRLP++ TC N L LP Y S E++   LL AI  A  GF L+
Sbjct: 359  DDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQEASEGFGLA 405
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase Huwe1 Length = 388 Back     alignment and structure
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex Length = 386 Back     alignment and structure
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase Length = 392 Back     alignment and structure
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin Ligase Length = 398 Back     alignment and structure
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation Mediated By The Wwp1 Hect Domain E3 Ligase Length = 374 Back     alignment and structure
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 358 Back     alignment and structure
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By Anchoring The E2 To The Hect Domain Length = 380 Back     alignment and structure
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 429 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1026
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 1e-170
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 1e-163
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 1e-158
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 1e-156
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 1e-156
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 1e-149
3pt3_A118 E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed 9e-42
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Length = 405 Back     alignment and structure
 Score =  502 bits (1296), Expect = e-170
 Identities = 137/404 (33%), Positives = 209/404 (51%), Gaps = 16/404 (3%)

Query: 626  EILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMS 685
            E+L Q P +  F  + K F+ +L  + +      +       +RRDH+ ED+Y ++   S
Sbjct: 15   EVLFQGPHM-DFDVKRKYFRQELERLDEGLRKEDM----AVHVRRDHVFEDSYRELHRKS 69

Query: 686  EEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSD--HLLYP 743
             E+++  + + F  E      G D GG+ +++   I+R  F+  Y LF+ +         
Sbjct: 70   PEEMKNRLYIVFEGE-----EGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTI 124

Query: 744  NPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPE 803
            NP S   +  HL +F F+G ++AKA+++  L++  F   F   +  K     D+ S D  
Sbjct: 125  NPSSH-ANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYH 183

Query: 804  LYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSN 863
             Y+ L++L   +      +L F     E+G     +L P G NI VT EN   ++HLV  
Sbjct: 184  FYQGLVYLLENDVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHLVCQ 243

Query: 864  HRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGG 923
             R+   IR+Q + FL GF ++I K  I +F E EL+LLISG    +D DDL+ NT Y   
Sbjct: 244  MRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPT-IDIDDLKSNTEY-HK 301

Query: 924  YHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEE 983
            Y S    I+ FW  L+SF   ++ KFL+FVTG S+ PL GF  LE +  IQ+      + 
Sbjct: 302  YQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDR 361

Query: 984  ALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEA-GFDLS 1026
            + DRLP++ TC N L LP Y S E++   LL AI   + GF L+
Sbjct: 362  STDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQEASEGFGLA 405
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Length = 392 Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Length = 374 Back     alignment and structure
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Length = 380 Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429 Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Length = 358 Back     alignment and structure
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Length = 118 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1026
d1nd7a_374 d.148.1.1 (A:) WW domain-containing protein 1, WWP 1e-101
d1c4za_350 d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) 3e-94
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 374 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  319 bits (819), Expect = e-101
 Identities = 121/382 (31%), Positives = 196/382 (51%), Gaps = 21/382 (5%)

Query: 644  FQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGV 703
            F+ +LA  R    S+ + +  +  + R  + ED++ Q+  +   DLR  + V F  E   
Sbjct: 4    FRWKLAHFRYLCQSNALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGE--- 60

Query: 704  EEAGIDGGGIFKDFMENITRAAFDVQYGLFKET--SDHLLYPNPGSGMIHEQHLQFFHFL 761
               G+D GG+ +++   ++    +  Y LF+    +++ L  NP S  I+  HL +F F+
Sbjct: 61   --EGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPAS-TINPDHLSYFCFI 117

Query: 762  GILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISEL 821
            G  +A A+F G  +D  F+  F  ++  K   + DL S+D E Y  LI+++    +   L
Sbjct: 118  GRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEECGL 177

Query: 822  ELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGF 881
            E+YF +     G+ T  +L  GG NI VT EN   +I L++  R +  +++Q+  FL GF
Sbjct: 178  EMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGF 237

Query: 882  QQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSF 941
             +++   W+  F+E EL++++ G  + +D  D ++NT Y   Y      I  FW+ +K  
Sbjct: 238  NEVVPLQWLQYFDEKELEVMLCGMQE-VDLADWQRNTVYR-HYTRNSKQIIWFWQFVKET 295

Query: 942  SLENQKKFLKFVTGCSRGPLLGFKYLEP-----LFCIQRAAGSASEEALDRLPTSATCMN 996
              E + + L+FVTG  R PL GF  L        FCI++            LP S TC N
Sbjct: 296  DNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCIEKVGKD------TWLPRSHTCFN 349

Query: 997  LLKLPPYRSKEQMSTKLLYAIN 1018
             L LPPY+S EQ+  KLL+AI 
Sbjct: 350  RLDLPPYKSYEQLKEKLLFAIE 371
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1026
d1nd7a_374 WW domain-containing protein 1, WWP1 {Human (Homo 100.0
d1c4za_350 Ubiquitin-protein ligase E3a (E6ap) {Human (Homo s 100.0
d1w7ja2730 Myosin S1, motor domain {Chicken (Gallus gallus), 96.31
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 96.05
d1kk8a2789 Myosin S1, motor domain {Bay scallop (Aequipecten 95.61
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 94.24
d1kk8a2789 Myosin S1, motor domain {Bay scallop (Aequipecten 92.85
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=661.51  Aligned_cols=366  Identities=33%  Similarity=0.592  Sum_probs=336.3

Q ss_pred             CCHHCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf             24010499999999999860299987521028971985599999999249910137737999983367521244688760
Q 001698          635 VPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIF  714 (1026)
Q Consensus       635 ~pf~~rv~~f~~~~~~~r~~~~~~~~~~~~~i~VrR~~iled~~~~l~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~  714 (1026)
                      ++|..|...|+......       ......+++|||++|++|+++++...++.+++++|+|+|+|     |+|+|+|||+
T Consensus         2 ~~~~~~~~~f~~~~~~~-------~~~~~~~i~V~R~~l~~d~~~~l~~~~~~~l~~~l~V~F~g-----E~g~D~GG~~   69 (374)
T d1nd7a_           2 MGFRWKLAHFRYLCQSN-------ALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRG-----EEGLDYGGLA   69 (374)
T ss_dssp             CTHHHHHHHHHHHHHHT-------CCSSEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEEEETT-----TCCCCCTHHH
T ss_pred             CCHHHHHHHHHHHHHHC-------CCCCCEEEEECCCCHHHHHHHHHHHCCHHHHCCCEEEEECC-----CCCCCCCCCH
T ss_conf             63789999999887616-------89885599976565899999999716989847876999789-----8744787119


Q ss_pred             HHHHHHHHHHHHCCCCCCCEECCCC--CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             9999999998403447981224897--30109999861456777999998999999882980256672989985212588
Q 001698          715 KDFMENITRAAFDVQYGLFKETSDH--LLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYN  792 (1026)
Q Consensus       715 rEff~~i~~e~~~p~~glF~~~~~~--~l~pnp~s~~~~~~~l~~f~fiG~llg~ai~~~~~l~l~f~~~f~k~Ll~~~~  792 (1026)
                      ||||+++++++++|++|+|..++++  .++|||.+. ..++++++|+++|+++|+||+++.+++++||++|||+|+|.++
T Consensus        70 rEff~~l~~el~~p~~~lf~~~~~~~~~~~~~p~~~-~~~~~~~~f~~lG~lig~al~~~~~~~~~f~~~f~k~Llg~~~  148 (374)
T d1nd7a_          70 REWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPAST-INPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKL  148 (374)
T ss_dssp             HHHHHHHHHHHTCGGGSSEEESSSSSCCEEECGGGG-GSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCC
T ss_conf             999999999980886687566479885535587443-6805899998857999999984961387756899988549989


Q ss_pred             CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHH
Q ss_conf             88988899977544467752014653311003899816678610243149996431373459999999766686055999
Q 001698          793 YLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQ  872 (1026)
Q Consensus       793 ~l~DL~~lDp~l~~sL~~l~~~~~dve~l~L~F~~~~~~~g~~~~~eL~p~G~~i~VT~~N~~eYI~~~~~~~l~~~i~~  872 (1026)
                      +++||+++||++|++|.++++++.+..+++++|++..+..|...++||+|||++++||.+|+.+||+++++|+++++++.
T Consensus       149 t~~DL~~iD~~~~~sl~~l~~~~~e~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~VT~~N~~~yv~~~~~~~l~~~~~~  228 (374)
T d1nd7a_         149 TIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQE  228 (374)
T ss_dssp             CHHHHHTTCHHHHHHHHHHHSSCSCSSCCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHTTTHH
T ss_pred             CHHHHHHHCHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf             89999885789887499998546410466035787751278742254478997652068789999999999997211789


Q ss_pred             HHHHHHHHHCCCCCHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHCCEE
Q ss_conf             99999974000353258720369999996718999889788744132367668983699999999920999888641432
Q 001698          873 QSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKF  952 (1026)
Q Consensus       873 q~~af~~Gf~~vip~~~l~~F~~~EL~~li~G~~~~id~~~l~~~t~y~ggy~~~~~~i~~FW~vl~~~s~eer~~fL~F  952 (1026)
                      |++||++||++|+|..++++|+|+||+.++||.++ +|+++|+++|.|. ||+.+|++|+|||+|+++|++|||++||+|
T Consensus       229 ~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~-id~~~l~~~~~y~-gy~~~s~~i~~fw~vl~~~t~ee~~~fL~F  306 (374)
T d1nd7a_         229 QTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQE-VDLADWQRNTVYR-HYTRNSKQIIWFWQFVKETDNEVRMRLLQF  306 (374)
T ss_dssp             HHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCCCC-CCHHHHHHTEEEE-SCCTTSHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHCCHHHHHHHHCCCCC-CCHHHHHHHEEEC-CCCCCCHHHHHHHHHHHHCCHHHHHHHHEE
T ss_conf             99999986987679898764889999986279987-7889996432613-678998899999998770699999874466


Q ss_pred             ECCCCCCCCCCCCCCC-----CCEEEEECCCCCCCCCCCCCCEECCCCCEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             3577777889845679-----72358505899898579999500156581304899999999999999997189
Q 001698          953 VTGCSRGPLLGFKYLE-----PLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEA 1021 (1026)
Q Consensus       953 vTG~sr~P~~Gf~~l~-----p~f~i~~~~~~~~~~~~~~LPtA~TCfn~L~LP~Y~s~e~l~eKL~~AI~~~~ 1021 (1026)
                      +||++|+|++||+.+.     ++|+|++.+.      +++||+||||||.|+||+|+|+|+|++||++||++++
T Consensus       307 vTGs~rlP~~G~~~l~~~~~~~~~~i~~~~~------~~~LP~A~TCfn~L~LP~Yss~e~l~ekL~~AI~~~e  374 (374)
T d1nd7a_         307 VTGTCRLPLGGFAELMGSNGPQKFCIEKVGK------DTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETE  374 (374)
T ss_dssp             HHSCSCCCTTCGGGCEETTEECCEEEECCSC------TTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHSCC
T ss_pred             ECCCCCCCCCCHHHHCCCCCCCCEEECCCCC------CCCCCCHHHHHCEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf             3689988986456543567887513146899------9999705440267669898899999999999997149
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure