Citrus Sinensis ID: 001702

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020----

MESIIARALEYTFKYWLKSFSRDQFKLQGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQIEPIVLQVDRLDLVLEENPDKDACNYASSTPTPTGSSKGSGYGFADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMFADGSIARSNEGASHRDEDGAKRAFFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCLNRDDVDLTTQQLSTEAAGRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRATVSDGETASNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLVLIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVNHGAVLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCLWEDQPIDASQRKWTAGASHLSLSLETCTSITGSQNSNSGLWKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVACQQYLSNTSVEQLFFVLDIYTYFGRVSEKIVRVGKNKSAMKSGNESLGVKLMENAPNDTAVSLAVKDLQLRFLEPSSMNIEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLPPSESCPQDIGNGYPQLRAVFWVHKKGKHRLNDSAYAMPFLDMSMVHVIPLSEGDRECHSLSLSACISGVRLGGGMNYAEALLHRFGILGPDGGPGEGLSKGIEHLSEGPLSKLFKASPLSVEDVGEGRNSLDGKDGLVHLGLPDDVDICVELKDWLFALEGAQEMEERCCLSSQEVGREERSWHTTFQSVRAKAKSIPRQGKPYGTQRHPVELVTCGWPADLEASGPKGFTTWCLTCKWNQRKCWLIWWYKC

cHHHHHHHHHHHHHHHHcccccccEEEEccEEEEEcccccHHHHHHHccccccEEEEEEEEEEEEEEEcccccccccccEEEEEcEEEEEccccccccccccccccccccccccccccccHHHHHcccEEEEEEEEEEEEEcccccccccccccccEEEEEEEEEEEEEcccccEEEccccEEcccccccEEEEEEEEEEEEEEEEcccccccccccHHHccccccccccccccccccccccEEEEEccEEEEEEEEEEcccccccEEEEEEEccccccccccHHHHHHHHHHHcEEEEEccccccccccccHHHHccccEEEEEEEEEEEEEEccHHHHHHHHHHHccEEEEEccccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccEEEcccEEEEEccccHHHHHHHccccEEEccccccccccccEEEEEEEcEEEEEEccccccccccccccccccccccccEEEEEcEEEccccccccEEccccccccEEEccccccccccccccccccccEEEEEEEEcccccccccccccEEEEEccccEEEEEEEEccccccEEccccccEEEEEEEEEEccccccEEEHHHHHHHHHHccccEEEEEHHccccccccccccccccccccccccccEEEEEEcccEEEEccccccccccccEEEEEcccEEEEEEEccccEEEEEEEEEEEEEEEEEEEEccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccEEEEEEEEEEEccccccccccEEEEEEEEEEEEcccHHHHHHHHHHHccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcHHHHccccHHHccccccccccccccccEEEEEccEEEEEEccccccccccccccccccEEEEEEccEEEEccccccEEEEEEEEcccEEEEEEEEEcc

cHHHHHHHHHHHHHHHHHcccHcHEEccccEEEEEcccccHHHHHHHcccccHEEEEEEEEcEEEEEEEEEEEEcccccEEEEEEEEEEEEEEccccccccccccccccccccccccccHHHHHEccEEEEEEEEEEEEEEcccccccccccccccEEEEEEEEEEEEEccccccEccccEEEEccccccEEEEEEEEEEEEEEEEcccccccccHHHccccccccccccccccEEEEEcccHHHcccccEEEEEEEEccccccccEEEEEEccHccccccccHHHHHHHHHHccEEEEEccccccHHHHHHHHHHccccEEEEEEEEEEEEEccHHHHHHHHHHHHHHcccEcccccccccccEEEEEHHHHHHHccccccEEEcccccccccccccccHHHHHccccccccccccEEEcccccEEEEEEEEEccccccccccccEEEEccccEEEEcHHHHHHHHHHHHccEEEccccccccccHHEEEEEEccccEEEEccHHHccccccccccccccccccEEEEEEcEEEccccccEEEEEcccccccEEEEcccccccccHHHHHHHccHHEEEEEEccccccccccccccEEEEEccccEEEEEEEEccccccccccccccEEEEEEEHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHccccccHHcccccccHcHHHHcccccEEEEEEHHcEEEEccccccccccccEEEEEcccEEEEEEEcccccEEEEEcEEEEEEEEEEEEccccccccccccEEcccccccccccccccccEEEEEEEcccccccccccccccEEEEEEEEEEEcccccccccEEEEEEEEEcEEcccHHHHHHHHHHHHccccccccccccHHHHHHHcccccHHHHcccccccccccccccccccccccccccccccccEEEEEHHHHHHHHHcHHHHHHcccccccccccccccEEEEEEEEEEEEcccccccccccccccccEEEEEEEcccccccccccEEEEEEEccHccccEEEEEEEcc

MESIIARALEYTFKYWLKSFSRDQFKLQGrtaqlsnldingdalhasmglppalhvTTAKLGKleiilpssvsnvqiepivLQVDRLDlvleenpdkdacnyasstptptgsskgsgygfadkiadgmtlQVNTVNLLLVTrggaqrdggaswtppmasiTIRNLVLCTTNENWQVVNLKeardfslnkKFIYVFKKLEWETLsvdllphpdmfadgsiarsnegashrdedgakraffggerfieGISAQAYITVQRTelnsplglevQLHVTEAvcpalsepGLRALLRFLSGLYvclnrddvdlttqqlsteAAGRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFsratvsdgetasnLTKITVAGLflrdtfsrppstlvqpsmqavSEDLVlipdfakdfcpvicplgdqqwqinkgvpliclhtlqvkpspappsfasrtviscqplmihLQEESCLRISSFLADgilvnhgavlpdssvnsLAFYledlditvpldmnkldnharqrnltahssfaGARLHIKKLffsespslkLRLLHlekdpacfclwedqpidasqrkwtagASHLSLSLETCtsitgsqnsnsglwKCVELKDACIEVAMvsadgkpltvvpppggvvRIGVACQQYLSNTSVEQLFFVLDIYTYFGRVSEKIVRVGKNKSAMKSGNESLGVKlmenapndtaVSLAVKDLQlrflepssmniegmplvqfvgedMFIKVTHRTLGGAVAVSSTILWESvevdcvdteenlphengillppsescpqdigngypqLRAVFWVHkkgkhrlndsayampfldmsmvhviplsegdrechsLSLSACIsgvrlgggMNYAEALLHRFgilgpdggpgeglskgiehlsegplsklfkasplsvedvgegrnsldgkdglvhlglpddVDICVELKDWLFALEGAQEMEERCClssqevgreerswHTTFQSVRAKaksiprqgkpygtqrhpvelvtcgwpadleasgpkgfttwcltckwnqrkcwliwwykc

MESIIARALEYTFKYWLKSFSRDQFKLQGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILpssvsnvqiepiVLQVDRLDLVLEENpdkdacnyasstptptgsskgSGYGFADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNlkeardfslnKKFIYVFKKLEWETLSVDLLPHPDMFADGSIARsnegashrdedGAKRAFFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCLNRDDVDLTTQQLSTEAAGRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRAtvsdgetasnltKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLVLIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVNHGAVLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCLWEDQPIDASQRKWTAGASHLSLSLETCTSItgsqnsnsgLWKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVACQQYLSNTSVEQLFFVLDIYTYFGRVSEKIvrvgknksamksgNESLGVKLMENAPNDTAVSLAVKDLQLRFLEPSSMNIEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLPPSESCPQDIGNGYPQLRAVFWVHKKGKHRLNDSAYAMPFLDMSMVHVIPLSEGDRECHSLSLSACISGVRLGGGMNYAEALLHRFGILGPDGGPGEGLSKGIEHLSEGPLSKLFKASPLSVEDVGEGRNSLDGKDGLVHLGLPDDVDICVELKDWLFALEGAQEMEERCCLSSqevgreerswhttfqsvrakaksiprqgkpygtqrhpVELVTCGWPADLEASGPKGFTTWCLTCKWNQRKCWLIWWYKC

MESIIARALEYTFKYWLKSFSRDQFKLQGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQIEPIVLQVDRLDLVLEENPDKDACNYAsstptptgsskgsgYGFADKIADGMtlqvntvnlllvtRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMFADGSIARSNEGASHRDEDGAKRAFFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCLNRDDVDLTTQQLSTEAAGRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRATVSDGETASNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLVLIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVNHGAVLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCLWEDQPIDASQRKWTAGASHLSLSLETCTSITGSQNSNSGLWKCVELKDACIEVAMVSADgkpltvvpppggvvrigvACQQYLSNTSVEQLFFVLDIYTYFGRVSEKIVRVGKNKSAMKSGNESLGVKLMENAPNDTAVSLAVKDLQLRFLEPSSMNIEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLPPSESCPQDIGNGYPQLRAVFWVHKKGKHRLNDSAYAMPFLDMSMVHVIPLSEGDRECHSLSLSACISGVRLGGGMNYAEALLHRFgilgpdggpgeglskgIEHLSEGPLSKLFKASPLSVEDVGEGRNSLDGKDGLVHLGLPDDVDICVELKDWLFALEGAQEMEERCCLSSQEVGREERSWHTTFQSVRAKAKSIPRQGKPYGTQRHPVELVTCGWPADLEASGPKGFTTWCLTCKWNQRKCWLIWWYKC

***IIARALEYTFKYWLKSFSRDQFKLQGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQIEPIVLQVDRLDLVLE*************************YGFADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMF*********************RAFFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCLNRDDVDLTTQQLSTEAAGRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRATVSDGETASNLTKITVAGLFLRDTFSR****LV***MQAVSEDLVLIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVK*******FASRTVISCQPLMIHLQEESCLRISSFLADGILVNHGAVLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCLWEDQPIDASQRKWTAGASHLSLSLETCTSITGSQNSNSGLWKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVACQQYLSNTSVEQLFFVLDIYTYFGRVSEKIVRVG*************************AVSLAVKDLQLRFLEPSSMNIEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLP****CPQDIGNGYPQLRAVFWVHKKGKHRLNDSAYAMPFLDMSMVHVIPLSEGDRECHSLSLSACISGVRLGGGMNYAEALLHRFGILGP********************************************DGLVHLGLPDDVDICVELKDWLFALEGAQEMEERCCL************************************RHPVELVTCGWPADLEASGPKGFTTWCLTCKWNQRKCWLIWWYK*

MESIIARALEYTFKYWLKSFSRDQFKLQGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQIEPIVLQVDRLDLV*********************************IADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPD*************************FFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCLN*********************SIVVDHIFLCIKDAEFQLELLMQSLFFSRA*V***ETASNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLVLIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVNHGAVLPDSSVNSLAFYLEDLDITVPLDMN***************SFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCLWEDQPIDASQRKWTAGASHLSLS*****************WKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVACQQYLSNTSVEQLFFVLDIYTYFGRVS**************************NAPNDTAVSLAVKDLQLRFLEPSSMNIEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHE****************NGYPQLRAVFWVHKKGK******AYAMPFLDMSMVHVIPLSEGDRECHSLSLSACISGVRLGGGMNYAEALLHRFGILGPDGGPGEGLSKGIEHLSEGPLSKLFKA********************LVHLGLPDDVDICVELKDWLFALEGAQEMEERCCLSSQEVGREERSWHTTFQS***********************LVTCGWPADLEASGPKGFTTWCLTCKWNQRKCWLIWWYKC

MESIIARALEYTFKYWLKSFSRDQFKLQGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQIEPIVLQVDRLDLVLEENPDKDACNYA************SGYGFADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMFADGSIAR**********DGAKRAFFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCLNRDDVDLTTQQLSTEAAGRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRATVSDGETASNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLVLIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVNHGAVLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCLWEDQPIDASQRKWTAGASHLSLSLETCTSITGSQNSNSGLWKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVACQQYLSNTSVEQLFFVLDIYTYFGRVSEKIVRVGKNKSAMKSGNESLGVKLMENAPNDTAVSLAVKDLQLRFLEPSSMNIEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLPPSESCPQDIGNGYPQLRAVFWVHKKGKHRLNDSAYAMPFLDMSMVHVIPLSEGDRECHSLSLSACISGVRLGGGMNYAEALLHRFGILGPDGGPGEGLSKGIEHLSEGPLSKLFKASPLSVEDVGEGRNSLDGKDGLVHLGLPDDVDICVELKDWLFALEGAQEM*************************************PYGTQRHPVELVTCGWPADLEASGPKGFTTWCLTCKWNQRKCWLIWWYKC

*ESIIARALEYTFKYWLKSFSRDQFKLQGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQIEPIVLQVDRLDLVLEENPD********************GYGFADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMFADGSI************DGAKRAFFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCLNRDDVDLTTQQLST*AAGRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRATVSDGETASNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLVLIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVNHGAVLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCLWEDQPIDASQRKWTAGASHLSLSLETCTSIT****SNSGLWKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVACQQYLSNTSVEQLFFVLDIYTYFGRVSEKIVRVG***************KLMENAPNDTAVSLAVKDLQLRFLEPSSMNIEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLPPSESCPQDIGNGYPQLRAVFWVHKKGK****DSAYAMPFLDMSMVHVIPLSEGDRECHSLSLSACISGVRLGGGMNYAEALLHRFGILGPDGGPGEGLSKGIEHLSEGPLSKLFKASPL****************GLVHLGLPDDVDICVELKDWLFALEGAQEMEERCCLSSQEVGREERSWHTTFQSVRAKAKSIPR*****GTQRHPVELVTCGWPADLEASGPKGFTTWCLTCKWNQRKCWLIWWYKC

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1024	2.2.26 [Sep-21-2011]
Q6BDS2		1440	UHRF1-binding protein 1 O	yes	no	0.184	0.131	0.235	8e-09
Q6NRZ1		1415	UHRF1-binding protein 1-l	N/A	no	0.184	0.133	0.235	9e-09
A2RSJ4		1457	UHRF1-binding protein 1-l	no	no	0.184	0.129	0.240	1e-08
A0JNW5		1464	UHRF1-binding protein 1-l	no	no	0.183	0.128	0.229	2e-07

>sp\|Q6BDS2\|URFB1_HUMAN UHRF1-binding protein 1 OS=Homo sapiens GN=UHRF1BP1 PE=1 SV=1	Back alignment and function desciption

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 96/208 (46%), Gaps = 19/208 (9%)

Query: 1   MESIIARALEYTFKYWLKSFSRDQFKLQGRTA--QLSNLDINGDALHASMGLPPALHVTT 58
           M  II + +      + K+ S D+  L       QL+NL+++ + L   + LP  L +T 
Sbjct: 1   MAGIIKKQILKHLSRFTKNLSPDKINLSTLKGEGQLTNLELDEEVLQNVLELPTWLAITR 60

Query: 59  AKLGKLEIILPSSVSNVQIEPIVLQVDRLDLVLEENPDKDACNYASSTPTPTGSSKGSGY 118
               +  I +    + ++  PI L +D++++ ++   D    N  S     +G S+   Y
Sbjct: 61  VYCNRASIRI--QWTKLKTHPICLCLDKVEVEMKTCEDPRPPNGQSPIALASGQSE---Y 115

Query: 119 GFADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVN 178
           GFA+K+ +GM + VN++ + + ++               AS  +  L   + N NWQ  +
Sbjct: 116 GFAEKVVEGMFIIVNSITIKIHSKAF------------HASFELWQLQGYSVNPNWQQSD 163

Query: 179 LKEARDFSLNKKFIYVFKKLEWETLSVD 206
           L+  R     +  +  FK++ W+TL ++
Sbjct: 164 LRLTRITDPCRGEVLTFKEITWQTLRIE 191

May act as a negative regulator of cell growth.
Homo sapiens (taxid: 9606)

>sp\|Q6NRZ1\|UH1BL_XENLA UHRF1-binding protein 1-like OS=Xenopus laevis GN=uhrf1bp1l PE=2 SV=1	Back alignment and function description

>sp\|A2RSJ4\|UH1BL_MOUSE UHRF1-binding protein 1-like OS=Mus musculus GN=Uhrf1bp1l PE=2 SV=2	Back alignment and function description

>sp\|A0JNW5\|UH1BL_HUMAN UHRF1-binding protein 1-like OS=Homo sapiens GN=UHRF1BP1L PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1024
255563667		1210	conserved hypothetical protein [Ricinus	0.961	0.814	0.737	0.0
359493954		1215	PREDICTED: uncharacterized protein LOC10	0.964	0.813	0.731	0.0
449470413		1203	PREDICTED: uncharacterized protein LOC10	0.951	0.809	0.676	0.0
356543944		1217	PREDICTED: uncharacterized protein LOC10	0.978	0.823	0.661	0.0
356543166		1213	PREDICTED: uncharacterized protein LOC10	0.958	0.809	0.674	0.0
302143215		1146	unnamed protein product [Vitis vinifera]	0.897	0.801	0.697	0.0
356549825		1216	PREDICTED: uncharacterized protein LOC10	0.960	0.809	0.679	0.0
334185500		1199	uncharacterized protein [Arabidopsis tha	0.944	0.806	0.670	0.0
356543942		1199	PREDICTED: uncharacterized protein LOC10	0.958	0.819	0.651	0.0
297830766		1199	hypothetical protein ARALYDRAFT_318821 [	0.943	0.805	0.664	0.0

>gi\|255563667\|ref\|XP_002522835.1\| conserved hypothetical protein [Ricinus communis] gi\|223537919\|gb\|EEF39533.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score = 1472 bits (3810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 737/1000 (73%), Positives = 845/1000 (84%), Gaps = 15/1000 (1%)

Query: 1   MESIIARALEYTFKYWLKSFSRDQFKLQGRTAQLSNLDINGDALHASMGLPPALHVTTAK 60
           ME+I+ARALEYT KYWLKSFSRDQFKLQGRT QLSNLDINGDALHASMGLPPAL+VT AK
Sbjct: 1   MEAILARALEYTLKYWLKSFSRDQFKLQGRTVQLSNLDINGDALHASMGLPPALNVTKAK 60

Query: 61  LGKLEIILPSSVSNVQIEPIVLQVDRLDLVLEENPDKDACNYASSTPTPTGSSKGSGYGF 120
           +GK EIILP  VSNVQ+EPIV+Q+D+LDLVLEEN D DAC+   ST + TGS+K SGYGF
Sbjct: 61  VGKFEIILPY-VSNVQVEPIVVQIDKLDLVLEENNDLDACSSTHSTQSSTGSTKASGYGF 119

Query: 121 ADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLK 180
           ADKIADGMT+QV+TVNLLL TRGGA+R+GGA+W  P+A+ITIRNL+L TTNENWQVVNLK
Sbjct: 120 ADKIADGMTIQVSTVNLLLETRGGARREGGAAWASPLAAITIRNLLLYTTNENWQVVNLK 179

Query: 181 EARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMFADGSIARSNEGASHRDEDGAKRAFFG 240
           EARDFS NK FIYVFKKLEWE+LS+DLLPHPDMFAD S+ARS EG++ RD+DGAKR FFG
Sbjct: 180 EARDFSNNKGFIYVFKKLEWESLSIDLLPHPDMFADASLARSQEGSTQRDDDGAKRVFFG 239

Query: 241 GERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCL 300
           GERF+EGIS +A+IT+QRTE N+PLGLEVQLH+TEAVCPALSEPGLRALLRFL+GLYVCL
Sbjct: 240 GERFLEGISGEAHITMQRTEQNNPLGLEVQLHITEAVCPALSEPGLRALLRFLTGLYVCL 299

Query: 301 NRDDVDLTTQQLSTEAAGRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRATVSDGETA 360
           NR DVDL  QQ STEAAGRSLVS++VDHIF CIKDA+FQLELLMQSL FSRATVSDGE  
Sbjct: 300 NRGDVDLKAQQRSTEAAGRSLVSLLVDHIFFCIKDADFQLELLMQSLLFSRATVSDGEIV 359

Query: 361 SNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLVLIPDFAKDFCPVICPLGDQQWQI 420
           +NLT + V GLFLRDTFSRPP TLVQPS++ V+E+ + IP FAK+FCP I PLGDQQ+Q+
Sbjct: 360 NNLTTVMVGGLFLRDTFSRPPCTLVQPSIENVTENCLEIPAFAKNFCPPIHPLGDQQFQL 419

Query: 421 NKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVNHGA 480
           + G+PLICLH+LQVKPSP PPSFAS TVI+CQPLMIHLQEESCLRISSFLADGI+VN G 
Sbjct: 420 SAGIPLICLHSLQVKPSPLPPSFASETVIACQPLMIHLQEESCLRISSFLADGIVVNPGD 479

Query: 481 VLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPS 540
           VLPD SVNSL F L++LD+TVPLDM+  DN A  +N T  SSF GARLHI+ LFFSESPS
Sbjct: 480 VLPDFSVNSLMFILKELDVTVPLDMSNSDNQAYNKNNTVQSSFTGARLHIENLFFSESPS 539

Query: 541 LKLRLLHLEKDPACFCLWEDQPIDASQRKWTAGASHLSLSLETCTSITGSQNSN---SGL 597
           LKLRLL LEKDPACFC+WE QP+DASQ+KWT GASHLSLSLET  S  G  +S+   SGL
Sbjct: 540 LKLRLLKLEKDPACFCMWEGQPVDASQKKWTTGASHLSLSLETSISSAGQLSSHGLTSGL 599

Query: 598 WKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVACQQYLSNTSVEQLFFVLDIYTY 657
           W+CVELKDA IEVAMV+ADG PLT+VPPPGGVVR+GVACQQYLSNTSV+QLFFVLD+Y Y
Sbjct: 600 WRCVELKDASIEVAMVTADGGPLTIVPPPGGVVRVGVACQQYLSNTSVDQLFFVLDLYAY 659

Query: 658 FGRVSEKIVRVGKNKSAMKSGNESLGVKLMENAPNDTAVSLAVKDLQLRFLEPSSMNIEG 717
           FGRV EKI  VGKNK        S   +LM+  P DTAVSLAVK LQLRFLE S++NIEG
Sbjct: 660 FGRVGEKIASVGKNKRTESRNESSDDGRLMDKVPCDTAVSLAVKGLQLRFLESSTINIEG 719

Query: 718 MPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLPPSESC 777
           MPLVQF+G  +FIKV HRTLGGA+AVSST+LW+SV+VDCV+TE  L HE   +  P E+ 
Sbjct: 720 MPLVQFIGNGLFIKVAHRTLGGAIAVSSTLLWQSVQVDCVETEGRLAHEYSTVSTPIENG 779

Query: 778 PQDIGNGYPQLRAVFWVHKKGKHRLNDSAYAMPFLDMSMVHVIPLSEGDRECHSLSLSAC 837
                NGYPQLRAVFWVH   KH+ N  A  +PFLD+++VHVIP SE D+ECHSLS+SAC
Sbjct: 780 LATT-NGYPQLRAVFWVHNHQKHQPNGLACTIPFLDINIVHVIPFSERDKECHSLSVSAC 838

Query: 838 ISGVRLGGGMNYAEALLHRFGILGPDGGPGEGLSKGIEHLSEGPLSKLFKASPLSVEDVG 897
           ISG+RLGGGMNYAEALLHRFGILGPDGGPGEGL+KG+++LS GPLSKLFK S L V D+G
Sbjct: 839 ISGIRLGGGMNYAEALLHRFGILGPDGGPGEGLTKGLKNLSRGPLSKLFKTSHLRV-DLG 897

Query: 898 EGRNSLDGKD-GLVHLGLPDDVDICVELKDWLFALEGAQEMEERCCLSSQE-VGREERSW 955
           E R+  +GKD G++HLG+PDDVD+C+ELKDWLFALEGAQEM ER    + E +GREER W
Sbjct: 898 EDRSPENGKDGGILHLGMPDDVDVCIELKDWLFALEGAQEMAERWWFDNHENLGREERCW 957

Query: 956 HTTFQSVRAKAKSIPRQGKPY------GTQRHPVELVTCG 989
           HTTFQS+  KAK+ PR  +PY      G  ++PV+LVT G
Sbjct: 958 HTTFQSLLVKAKNSPRH-EPYAKGNMPGRHKYPVDLVTVG 996

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359493954\|ref\|XP_003634700.1\| PREDICTED: uncharacterized protein LOC100241773 isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449470413\|ref\|XP_004152911.1\| PREDICTED: uncharacterized protein LOC101210396 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356543944\|ref\|XP_003540418.1\| PREDICTED: uncharacterized protein LOC100811661 isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|356543166\|ref\|XP_003540034.1\| PREDICTED: uncharacterized protein LOC100782617 [Glycine max]	Back alignment and taxonomy information

>gi\|302143215\|emb\|CBI20510.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356549825\|ref\|XP_003543291.1\| PREDICTED: uncharacterized protein LOC100803142 [Glycine max]	Back alignment and taxonomy information

>gi\|334185500\|ref\|NP_001189943.1\| uncharacterized protein [Arabidopsis thaliana] gi\|29824401\|gb\|AAP04160.1\| unknown protein [Arabidopsis thaliana] gi\|110737203\|dbj\|BAF00550.1\| hypothetical protein [Arabidopsis thaliana] gi\|332642895\|gb\|AEE76416.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356543942\|ref\|XP_003540417.1\| PREDICTED: uncharacterized protein LOC100811661 isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|297830766\|ref\|XP_002883265.1\| hypothetical protein ARALYDRAFT_318821 [Arabidopsis lyrata subsp. lyrata] gi\|297329105\|gb\|EFH59524.1\| hypothetical protein ARALYDRAFT_318821 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh1_pm.C_scaffold_3001837	annotation not avaliable (1199 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1024
pfam12624		117	pfam12624, Chorein_N, N-terminal region of Chorein	1e-04

>gnl\|CDD\|204985 pfam12624, Chorein_N, N-terminal region of Chorein, a TM vesicle-mediated sorter	Back alignment and domain information

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 22/99 (22%), Positives = 49/99 (49%), Gaps = 7/99 (7%)

Query: 2  ESIIARALEYTFKYWLKSFSRDQFKLQ--GRTAQLSNLDINGDALHASMGLPPALHVTTA 59
          ES++A  L      ++++  ++Q  +       +L NL +  DAL   + LP  + V + 
Sbjct: 2  ESLVADLLNRYLGEYVENLDKEQLSVSIWSGDVELENLRLKKDAL-DKLDLP--IEVKSG 58

Query: 60 KLGKLEIILPSSVSNVQIEPIVLQVDRLDLVLEENPDKD 98
           +GKL + +P    ++  EP+V+ +D + ++     + +
Sbjct: 59 HIGKLTLKIP--WKSLGSEPVVITIDDVYILASPKDNDE 95

Although mutations in the full-length vacuolar protein sorting 13A (VPS13A) protein in vertebrates lead to the disease of chorea-acanthocytosis, the exact function of any of the regions within the protein is not yet known. This region is the proposed leucine zipper at the N-terminus. The full-length protein is a transmembrane protein with a presumed role in vesicle-mediated sorting and intracellular protein transport. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1024
KOG2955		1069	consensus Uncharacterized conserved protein [Funct	100.0
COG5043		2552	MRS6 Vacuolar protein sorting-associated protein [	100.0
KOG1809		1827	consensus Vacuolar protein sorting-associated prot	100.0
PF12624		118	Chorein_N: N-terminal region of Chorein, a TM vesi	99.8

>KOG2955 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Probab=100.00  E-value=4.2e-186  Score=1559.81  Aligned_cols=852  Identities=52%  Similarity=0.810  Sum_probs=800.8

Q ss_pred             ChhHHHHHHHHHHHHHhcCCCccCcce---ecCeEEeeccccchhhhhhhcCCCCeeEEeEEEeeeEEEEcCcccccccc
Q 001702            1 MESIIARALEYTFKYWLKSFSRDQFKL---QGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQI   77 (1024)
Q Consensus         1 MESLVa~lLnryLgkYVKNLdpDQLnL---sGGdVeL~NLeLKedALde~L~LP~~L~V~~G~~GkLtLkIP~SWTNLKs   77 (1024)
                      |||||+++|.++|++|+|||+||||+|   +| +++|+|||||+|||++.|+||+||.|++++||++.|.||  |||||+
T Consensus         1 M~sIIk~ql~khLs~ftKnltpdqi~L~~lKG-~~qL~nleineevL~~~L~LP~wL~I~~afc~k~~I~lP--wtklkT   77 (1069)
T KOG2955|consen    1 MESIIKRQLEKHLSYFTKNLTPDQIKLQGLKG-TAQLSNLEINEEVLHASLGLPPWLSITTAFCGKLEIMLP--WTKLKT   77 (1069)
T ss_pred             CchHHHHHHHHHHHHHHhcCChhhEeeeeccc-cceecceecCHHHHHHhhcCCchheeeeeeecceEEecc--chhccc
Confidence            999999999999999999999999999   45 999999999999999999999999999999999999999  999999


Q ss_pred             ccEEEEeccEEEEeecCCCccccccCCCCCCCCCCCCCCCCchHHHhhcCeEEEEEEEEEEEEeCCCCccCCCCCCCCcE
Q 001702           78 EPIVLQVDRLDLVLEENPDKDACNYASSTPTPTGSSKGSGYGFADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPM  157 (1024)
Q Consensus        78 ePV~I~ID~IyLvlep~~~~e~~r~~~~ss~~~ss~~~~~YGFitKIIDNLQV~InnIHIRYED~~~~~t~g~~~~~PFs  157 (1024)
                      +||+|.||+|.++++++.+.+.   +++.+++.....+++|||++||++||.++|+.|.|+++..+            |+
T Consensus        78 ~PI~v~iDkl~l~le~~~e~~~---~~gpsp~~tas~~S~YGFa~KI~egmSl~V~sV~I~~~t~~------------f~  142 (1069)
T KOG2955|consen   78 EPIVVQIDKLDLVLEENPEADV---TKGPSPSPTASAKSNYGFADKIAEGMSLQVKSVNILLETGG------------FA  142 (1069)
T ss_pred             cceEEEeeeeeEEeecCccccC---CCCCCCCCCcccccccchHHHHhcCceEEEEEEEEEeecCc------------cc
Confidence            9999999999998887766544   33344443333556799999999999999999999999875            67


Q ss_pred             EEEEEeeeEEEecCCCceeeccccccccccCCceEEEEEEEEecceeeEecCCCcccccccccccccCCCCCCCCCCcee
Q 001702          158 ASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMFADGSIARSNEGASHRDEDGAKRA  237 (1024)
Q Consensus       158 aGITLseLSaqSTDenWqpsdL~~tR~~s~~k~~ilIFKlL~wqsLSIYl~p~~dmf~d~~~~~sq~~iss~de~~P~Ry  237 (1024)
                      ++++|++|+++|||+.|+.+||++||+++++++.+++||+++|+.|+|++++++.| ......          ..+|.|+
T Consensus       143 aSf~L~~L~lyS~n~~W~~vdLR~tRi~~t~tg~il~FK~l~W~~lrIea~a~~s~-~e~~~~----------~~ap~rL  211 (1069)
T KOG2955|consen  143 ASFTLRNLVLYSTNESWKVVDLRETRIFSTNTGFILLFKKLEWEALRIEALAHPSM-TEANLA----------RSAPARL  211 (1069)
T ss_pred             eeEEEeeeEEEecCCCceeeeeeeeeeccCCCceEEEeeccceeeeeeeccCCCch-hhHHHh----------hcCceee
Confidence            89999999999999999999999999999999999999999999999999888876 222211          1378899


Q ss_pred             ecCcceeeeeeeeEEEEEEcccCCCCCccceeeeeeccccccccCHHHHHHHHHHHHHHHHHhccCCCCccccccchhhc
Q 001702          238 FFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCLNRDDVDLTTQQLSTEAA  317 (1024)
Q Consensus       238 If~~qyILkPISG~ARLtlNR~e~Dsp~~~kVqLlI~DEI~~~LSd~QYrdlL~fl~SL~r~~~R~~~~~~~qq~~~~a~  317 (1024)
                      |++.        |.+|||++|+..|+++...++++|+|+++|+||++|+|++++|+++++.|++|+++++|+||      
T Consensus       212 it~~--------gkiRItlkr~~~d~~vi~~~~~~IlddvlwvlT~pqLra~l~fat~m~~~l~~s~~~~ks~~------  277 (1069)
T KOG2955|consen  212 ITED--------GKIRITLKRTALDSPVILEVQLHILDDVLWVLTEPQLRALLRFATGMYLCLNRSDVDPKSQQ------  277 (1069)
T ss_pred             eccC--------CeEEEEEeeeccCCchhhHhHHhhhHhHHHhcccHHHHHHHHHHHHHHHHHhhhccCccCcC------
Confidence            8885        99999999999999987778888999999999999999999999999999999999999999      


Q ss_pred             cCceeEEEeeeEEEeeechhHHHHHHhhhcccceeeeccccccccccceeeeeeeeeccCCCCCceeeccccccccccCC
Q 001702          318 GRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRATVSDGETASNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLV  397 (1024)
Q Consensus       318 g~~~v~~~vdhifl~ikd~~f~~ell~~~~~~~ra~~~~~~~~~~l~~i~igglflrd~f~~ppc~lvqpsm~~~~~~~~  397 (1024)
                                                        |+|+++++.+.++.|++||+|+||.||+-||.+.||+|.+.... +
T Consensus       278 ----------------------------------~~vs~t~san~~~~~~~~g~~a~d~~s~i~~a~n~f~~k~tS~h-L  322 (1069)
T KOG2955|consen  278 ----------------------------------ACVSDTESANYLTKILIGGLFARDAFSRIPCALNQFSMKATSEH-L  322 (1069)
T ss_pred             ----------------------------------ceeeccccccccceeeecccccchhhhhchhhhcccchhhhhhc-c
Confidence                                              99999999999999999999999999999999999999976555 9


Q ss_pred             CcchhhhccCCccccCCcccceeecCcceEEEeecccccCCCCCCccccceeeccceEEEecccchhhhhhhccCceeec
Q 001702          398 LIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVN  477 (1024)
Q Consensus       398 ~vp~fa~~~~p~i~p~~~~~~~~~~~~pl~cl~~~q~~psp~pp~~as~tvi~cqpl~i~lqe~sclrissfladgiv~~  477 (1024)
                      +||+|+.+|||-|||+++..|+..-+.|.+-||++||+|+|-||+||+.||++|+|+|.|+|||.|+|+++|+|+|||||
T Consensus       323 ~I~~~dlh~Cddih~~~~~p~~~~i~~gamql~~~Qv~id~yP~h~a~~t~~~wm~~s~~~~~~a~~rn~l~~~f~~~v~  402 (1069)
T KOG2955|consen  323 AIPDFDLHFCDDIHPLDSGPWQIVIDVGAMQLHSLQVKIDPYPPHFASKTVIQWMPLSVHLQEEACLRNSLFLAFGIVVN  402 (1069)
T ss_pred             ccccchhhccccccccccCCCceEeccceeEEEEEEeecCcCChhhcccchhheeehhhcchHHHHHHHHHHHhhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCCCccceEEEEeeceeeeeecCccccchhhhccCccccCcccceeEEeeceeeccCccccceecccCCCCceeec
Q 001702          478 HGAVLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCL  557 (1024)
Q Consensus       478 ~~~~lpd~s~~s~~f~lk~~d~tvp~d~~~~~~~~~~~~~~~~~~f~garlhie~l~~~~sp~l~~rll~l~~dpacf~~  557 (1024)
                      ||+++||-++||+.|++|++||.+|+++..+...+...+.+.+.+|.|||+||||+.|++||.++.|++|+|+|||||++
T Consensus       403 p~~~~~~~~t~s~l~~~~~~~l~~~~vv~rl~D~~I~~vss~~~~~~~~~~~ie~~~~~~slp~~~~~v~lEf~~~y~p~  482 (1069)
T KOG2955|consen  403 PGDVLPDNSTNSLLFTLKELDLSVPLVVSRLQDSAIEEVSSVKKSFVGARLHIENLSFAESLPLKVRLVNLEFDPAYFPL  482 (1069)
T ss_pred             CccccCCCccchhHhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhhhccCcccceEEEEecccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccccccccccccceEEEEEeecCCCCcccC---CCCceeEeecccceEEEEEEecCCCcceecCCCCcEEEEee
Q 001702          558 WEDQPIDASQRKWTAGASHLSLSLETCTSITGSQNS---NSGLWKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGV  634 (1024)
Q Consensus       558 w~~qpvdasq~kw~~~as~~~lslet~~~~~~~~~~---~~~lw~cvel~d~~~e~am~t~dg~pl~~vpppggivr~gv  634 (1024)
                      |+||||++||++|+++|+|+|+..+|..-.+..|.+   +.|+|.|+|-+|..+|+|||.|||.||..||||||+||+|+
T Consensus       483 ~~~~PIp~s~~y~qlga~~fS~derT~~w~~q~~~~l~~~m~~~~~~~gn~vs~e~~dV~~dg~~l~~V~P~~v~~~~~~  562 (1069)
T KOG2955|consen  483 WPGQPIPASQKYWQLGASHFSLDERTSPWSTQLQSPLGPEMGLWNCVEGNDVSIEVADVSADGKPLITVPPPGVIVRIGV  562 (1069)
T ss_pred             CCCCcCCchhhheecCceEEEeecccchhhhhhhcccchhhchheeccCCccchheeeecCCCeeEEEecCccceeeccc
Confidence            999999999999999999999999999999999877   99999999999999999999999999999999999999999


Q ss_pred             eeeccccccceeehhhHHHHhhhhchhhhhhhhhcCcccccccCCccccccccccCCCcceEEEeeccceeeeeccccCC
Q 001702          635 ACQQYLSNTSVEQLFFVLDIYTYFGRVSEKIVRVGKNKSAMKSGNESLGVKLMENAPNDTAVSLAVKDLQLRFLEPSSMN  714 (1024)
Q Consensus       635 ~~~q~~sntsveql~fvl~ly~y~g~v~e~i~~~~~~~~~~~~~~~s~~~~l~~~~p~dtav~l~~~~l~~~fles~~~~  714 (1024)
                      +|++|.+-+++||+|||+|+|+|||+++|+|+.+++.+|.   +.-+.++++.++||+||||.|..|+||.+||+++-+.
T Consensus       563 ~c~l~~~f~df~~~~f~~~~yS~f~kss~~i~~~~~~~r~---~~~s~tt~~he~vk~~~~~~Lnk~~l~t~~~s~~wi~  639 (1069)
T KOG2955|consen  563 ACELYISFADFEQLFFVLDLYSYFGKSSEKISIVKESKRQ---NTVSLTTGLHEKVKSDTAVKLNKKDLQTKFLSSSWIS  639 (1069)
T ss_pred             ccccccchhhhhHHHHHHHHHhhccccccceeeechhhhh---hhhhcccchhhhccccchhhhhhhhhhhhhcccceee
Confidence            9999999999999999999999999999999999999999   8889999999999999999999999999999999999


Q ss_pred             cCCCceeEEecCceeEEEeccccceeEEEeeeeeeeEEEEeeeeCCCCccccCCCcCCCCCCC-CccCCCCCCcceEEEE
Q 001702          715 IEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLPPSESC-PQDIGNGYPQLRAVFW  793 (1024)
Q Consensus       715 ~eg~plvqf~g~d~~~~~thrtlgga~~vss~l~w~~v~v~cv~~e~~~~~e~~~~~~~~~~~-~~~~~~g~p~lr~vfw  793 (1024)
                      ++|||++|+.+.++..++||||++||++||++++||.++++||++..++.|||.+      ++ ..+..+|.-.+|.+||
T Consensus       640 ~~~mp~~kg~p~~~~vsf~~~~~i~~~~~~~ni~~Ep~e~~~V~~d~~q~~~~s~------~Gdk~~k~l~~~~l~~~~~  713 (1069)
T KOG2955|consen  640 TQDMPLVKGLPKDLSVSFTHRTLIGAIAVSSNIYWEPIEVDCVDTDVEQEHENSW------NGDKLVKCLGSTPLRRVFW  713 (1069)
T ss_pred             ccCCccccCcccceeeeecceEEeccccchhheeecccccceEecchhhhhhccc------cchhHHhhcccCccceeee
Confidence            9999999999999999999999999999999999999999999999999999988      34 5677789999999999


Q ss_pred             EecCCcccccCCcCCCCeeeeeeeEEeeCcCCCccccceeeEEEEeeEEecCchhhHHHHHhHhcccCCCCCCCcchhhh
Q 001702          794 VHKKGKHRLNDSAYAMPFLDMSMVHVIPLSEGDRECHSLSLSACISGVRLGGGMNYAEALLHRFGILGPDGGPGEGLSKG  873 (1024)
Q Consensus       794 v~~~~~~~~~~~~~~~pfldi~~~~vip~~~~d~e~hsl~v~a~vsgvrlgggm~y~e~llhrfgi~gpdggpg~gl~k~  873 (1024)
                      +.|+++....+...+ ||+||+++||||+.|.|+||||.+++|---                                  
T Consensus       714 ~tNg~~~~~S~dtl~-~f~~is~~~vi~l~e~~~~~~S~~i~~y~~----------------------------------  758 (1069)
T KOG2955|consen  714 VTNGRHDEHSGDTLT-PFLDISITHVIPLSEKDMECHSVSIVAYGT----------------------------------  758 (1069)
T ss_pred             ecCCCCCCcccccee-ecccceeEEEeehhhcccccceeeehhcCC----------------------------------
Confidence            999988887777654 999999999999999999999999876311                                  


Q ss_pred             hcccCCCccccccccCCCcccccCCCCcccCCCCCcccCCCCCceeeEEEeechhhhccChhhhhcccccCCccccccce
Q 001702          874 IEHLSEGPLSKLFKASPLSVEDVGEGRNSLDGKDGLVHLGLPDDVDICVELKDWLFALEGAQEMEERCCLSSQEVGREER  953 (1024)
Q Consensus       874 l~~ls~gpl~~lfk~s~~~~~d~~~~~~~~~~~~~~~~l~~pd~~dv~i~l~dwlfaleg~~~~~~~~~~~~~~~~re~~  953 (1024)
                                                 ....+-+|++||+.|||+||.|+||||+|||||.+.++.| -.++|++|||+|
T Consensus       759 ---------------------------~~~~~l~g~l~l~~~~~i~v~v~lr~~~~al~~~~~~~~~-~l~~e~i~~~~~  810 (1069)
T KOG2955|consen  759 ---------------------------PGNWNLDGFLHLGRPDDIDVSVELRDWLFALEGREGVGTR-ILNNEDIGREER  810 (1069)
T ss_pred             ---------------------------cchhccccceeecCCcceeeeEeehhhHHHhhcCcccccc-cccccccCcccc
Confidence                                       0123335899999999999999999999999999999988 228899999999


Q ss_pred             eeeeeeceEEEeeccCCCC------CCCCCcccCCceeEEeeccccccccCCCcce
Q 001702          954 SWHTTFQSVRAKAKSIPRQ------GKPYGTQRHPVELVTCGWPADLEASGPKGFT 1003 (1024)
Q Consensus       954 ~wh~tf~~l~~~~~~~~~~------~~~~~~~~~p~~~~t~~~~eglq~~kp~~~~ 1003 (1024)
                      |||+||+..+|.||++|+.      ++++..|+||++.+.|.+ ||||..||.-|-
T Consensus       811 ~~~~~~~~~~~~ak~~~~~~d~n~~~~~~~~h~~~~~s~~v~~-~~l~~~~p~~~k  865 (1069)
T KOG2955|consen  811 CWHTNFRTFRVIAKSTPKNVDSNGTENQCDAHKYPVDSIIVSV-EGLQTVKPQMQK  865 (1069)
T ss_pred             ccccccccceEeecccccccccccchhhhhcccCCCceeEEEc-ccCcccChHhhc
Confidence            9999999999999999995      788889999999999999 999999998764

>COG5043 MRS6 Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1809 consensus Vacuolar protein sorting-associated protein [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12624 Chorein_N: N-terminal region of Chorein, a TM vesicle-mediated sorter	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1024
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 47.5 bits (112), Expect = 2e-05
 Identities = 92/641 (14%), Positives = 180/641 (28%), Gaps = 199/641 (31%)

Query: 178 NLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMFADGSIARSNEGASHRDEDGAKRA 237
           + K+ +D   +     +  K E +     ++   D                    G  R 
Sbjct: 34  DCKDVQDMPKS-----ILSKEEID----HIIMSKD-----------------AVSGTLRL 67

Query: 238 FF--------GGERFIEGISAQAY---ITVQRTELNSPLGLEV-------QLHVTEAVCP 279
           F+          ++F+E +    Y   ++  +TE   P  +         +L+    V  
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 280 ALS----EP--GLR-ALLRFLSGLYVCLNRDDVDLTTQQLSTEAAGRS-LVSIVV-DHIF 330
             +    +P   LR ALL       V ++               +G++ +   V   +  
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLID-----------GVLGSGKTWVALDVCLSYKV 176

Query: 331 LC-------------IKDAEFQLELLMQSLF--FSRATVSDGETASNLT-KITVAGLFLR 374
            C                 E  LE+L Q L         S  + +SN+  +I      LR
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEML-QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 375 DTFSRP--PSTLVQPSMQAVSEDLVL----IPDFAKDF---CPVI--------------- 410
                    + L           LVL           F   C ++               
Sbjct: 236 RLLKSKPYENCL-----------LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284

Query: 411 ----CPLGDQQWQINKGVPL-ICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLR 465
                 L      +       + L  L  +P   P       V++  P  + +       
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE-----VLTTNPRRLSI------- 332

Query: 466 ISSFLADGILVNHGAVLPDSSVNSLAFYLEDLDITVPLDMNKLD-NHARQRNLTAHSSFA 524
           I+  + DG           +  N      + L   +   +N L+    R+        F 
Sbjct: 333 IAESIRDG---------LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-------F- 375

Query: 525 GARLHIKKLF-FSES---PSLKLRLLHLEKDPACFCLWEDQPIDAS--QRKWTAGASHL- 577
                  +L  F  S   P++ L L+  +   +   +  ++    S  +++       + 
Sbjct: 376 ------DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429

Query: 578 SLSLETCTSITGSQNSNSGLWKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVACQ 637
           S+ LE    +               L  + ++   +        ++PP            
Sbjct: 430 SIYLELKVKLENEY----------ALHRSIVDHYNIPKTFDSDDLIPPY---------LD 470

Query: 638 QY--------LSNTSVEQLFFVL-DIYTYFGRVSEKIVRVGKNKSAMKSGNESLG-VKLM 687
           QY        L N    +   +   ++  F  + +KI       +A  S   +L  +K  
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530

Query: 688 EN--APNDTAVSLAVKDLQLRFL---EPSSMNIEGMPLVQF 723
           +     ND      V  + L FL   E + +  +   L++ 
Sbjct: 531 KPYICDNDPKYERLVNAI-LDFLPKIEENLICSKYTDLLRI 570

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00