Citrus Sinensis ID: 001703
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1024 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FGS8 | 1027 | C2 and GRAM domain-contai | yes | no | 0.981 | 0.978 | 0.581 | 0.0 | |
| Q9ZVT9 | 1020 | C2 and GRAM domain-contai | no | no | 0.969 | 0.973 | 0.508 | 0.0 | |
| Q8K0T7 | 2210 | Protein unc-13 homolog C | yes | no | 0.117 | 0.054 | 0.317 | 1e-08 | |
| Q62770 | 2204 | Protein unc-13 homolog C | yes | no | 0.117 | 0.054 | 0.317 | 1e-08 | |
| Q8NB66 | 2214 | Protein unc-13 homolog C | yes | no | 0.117 | 0.054 | 0.317 | 1e-08 | |
| Q9Z1N9 | 1602 | Protein unc-13 homolog B | no | no | 0.117 | 0.074 | 0.324 | 2e-08 | |
| P27715 | 2155 | Phorbol ester/diacylglyce | no | no | 0.117 | 0.055 | 0.317 | 3e-08 | |
| Q62769 | 1622 | Protein unc-13 homolog B | no | no | 0.117 | 0.073 | 0.317 | 5e-08 | |
| O42976 | 764 | Uncharacterized membrane | yes | no | 0.105 | 0.141 | 0.279 | 7e-08 | |
| O14795 | 1591 | Protein unc-13 homolog B | no | no | 0.117 | 0.075 | 0.317 | 1e-07 |
| >sp|Q9FGS8|C2GR2_ARATH C2 and GRAM domain-containing protein At5g50170 OS=Arabidopsis thaliana GN=At5g50170 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1212 bits (3135), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/1020 (58%), Positives = 780/1020 (76%), Gaps = 15/1020 (1%)
Query: 5 RLYVYVLQGQDLLAKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVS 64
RLYVY+LQ +DL AK+++ K+ +G+HKSK+R+ ++ S+P+WNEEFVFR+ ++D+ + VV
Sbjct: 2 RLYVYILQAKDLPAKETFAKLHVGRHKSKTRVARDTSSPIWNEEFVFRISDVDEGDDVVV 61
Query: 65 VFQHND--DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGK 122
H++ D S+G L+G+VR+P++S+AAE+N L PTWF +E P KF N +CGK
Sbjct: 62 SILHHEQQDHQSIVSTG-LIGKVRIPLTSVAAEENQTLLPTWFVIEKPSDGKFVNIECGK 120
Query: 123 ILLTISLNGKGHNLSSNRLLYLHSNVSSNES-KELE-DPCVLSHDVSCSKAPCLDVTEGN 180
ILL++SL GK + S ++L ++ + E KELE P L +S +G
Sbjct: 121 ILLSLSLQGKWESTSGEKVLNDKQDIINLEGVKELEGSPKDL---ISSRDGKRRKHHDGK 177
Query: 181 HLMKAMVSHLEKIFNKNDQGLKT--EDSSELSSTPSDYEDCVEEHPPSHN---FEEAIKM 235
H+MK +V+H++K+F+K ++ K ++SS S S+YED ++ S FEE + +
Sbjct: 178 HIMKNIVNHIDKLFHKKEEISKRLHDESSVGQSVNSNYEDATDQCSSSATCTGFEEGLDL 237
Query: 236 MQSRENEGD-MPENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGP 294
MQS ++E + MPENL GG+L+DQ Y VSPC+LN FLF P SQFRK+LAELQG DVQEGP
Sbjct: 238 MQSSDSEREEMPENLTGGVLVDQKYLVSPCELNKFLFTPSSQFRKELAELQGLSDVQEGP 297
Query: 295 WEWKSGEMTCLTRAVSYMKAATKLVKAVKATEQQTYLKANGQEFAILVTVSTPDVPYGNT 354
W + LTR V+YM+AATK+VKAVKATE Q Y KA+G++FA+ V+VSTPDVPYGNT
Sbjct: 298 WTMMQEDTPRLTRVVTYMRAATKMVKAVKATENQVYRKASGKQFAVFVSVSTPDVPYGNT 357
Query: 355 FNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKESFEQFANL 414
F ++LLYKI+P E ++G ++S LIISWGI F QST+M+GMIEGGARQGLKESFEQF+NL
Sbjct: 358 FKIELLYKILPETEPTAGGEASRLIISWGIQFSQSTIMKGMIEGGARQGLKESFEQFSNL 417
Query: 415 LAQNLKILDSKDASDKDHMLATLQTEQQSDWELASEYFWNFTVVSAGFMILYVVVHILLC 474
LA+ K LD DK+ ++AT+Q+E ++D + A YFW+ +V+ A + +YVVVH+L C
Sbjct: 418 LAKTYKTLDPAVVLDKEQVIATVQSEPKTDLKSAFLYFWSSSVICAVLLSVYVVVHMLHC 477
Query: 475 EPSKRQGLEFYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVKAQGD 534
EPSK QG EFYGLDLPDSFGEL S GILV+ LE+V+ M HFV+ARL +G D GVKA G
Sbjct: 478 EPSKIQGFEFYGLDLPDSFGELFSSGILVLLLERVYIMTVHFVQARLHRGRDQGVKANGK 537
Query: 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEE 594
GW+LT+AL++G NLAS E T L DPYVVFTCNGKTRTSSV+LQ DPQW++++EFDAMEE
Sbjct: 538 GWILTIALIKGTNLASVEATELFDPYVVFTCNGKTRTSSVKLQAQDPQWNEVIEFDAMEE 597
Query: 595 PPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRI 654
PPSVLDVEVFDFDGPFDQ SLGHAEINFLKHT+ ELAD+ V+L G AQ++QSK+ LRI
Sbjct: 598 PPSVLDVEVFDFDGPFDQGASLGHAEINFLKHTADELADLSVALVGNHAQASQSKLQLRI 657
Query: 655 FLENNNGVETIKEYLTKMEKEVGKKLNLRSPHRNSTFQKLFALPPEEFLIKDFTCYLKRK 714
FLEN NGVET+K+YL+K+EKEVGKKLN+RSP +NS FQKLF LP EEFL+K++TCYLKRK
Sbjct: 658 FLENKNGVETMKDYLSKVEKEVGKKLNIRSPQKNSAFQKLFGLPHEEFLLKEYTCYLKRK 717
Query: 715 MPLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGR 774
+P+QG+LFLSARIV FY+N+FG+KTKF+FLWEDI+DIQ+L P+ A++GSP L+IIL K R
Sbjct: 718 LPVQGKLFLSARIVAFYSNVFGHKTKFYFLWEDIDDIQVLPPTFASLGSPLLLIILKKNR 777
Query: 775 GLDARHGAKSQDEEGRLRFYFQSFVSFNDASRTIMALWRSRTLTAYQKEQIAEEQQVQEE 834
GLDA+HGAKSQD+EGRL FYFQSFVSF+ SRTIMALW++RTL+ + QI EE Q +
Sbjct: 778 GLDAKHGAKSQDDEGRLSFYFQSFVSFDATSRTIMALWKTRTLSVDHRAQIVEEDQDVAD 837
Query: 835 MSTAADRGSVPNFEDA-KMSKVYNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTP 893
+ +V + DA MSKVY +LP V+ +M++F GG+LE ++MEKSGC +Y +T
Sbjct: 838 PFLLPEAVTVVSDADALMMSKVYTCDLPCDVELVMKIFGGGELERKIMEKSGCLSYASTT 897
Query: 894 WDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDHF 953
W+ KPGV ER LSY++N +VS+FGG VTC QQKSP + EGWI+NE+++LHDVPF DHF
Sbjct: 898 WESKKPGVYERRLSYKYNHYVSVFGGGVTCAQQKSPAPNDEGWILNEIVALHDVPFGDHF 957
Query: 954 RVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVERE 1013
RVH RYE++K+ + KC +Y+ I WLK+ KF+QRI+++I EKF +R K + +L ++E
Sbjct: 958 RVHIRYEVKKAGVDCKTSKCEVYLKIRWLKTIKFEQRISKSIMEKFRNRFKVIFDLFQKE 1017
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4 | Back alignment and function description |
|---|
Score = 1029 bits (2660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/1038 (50%), Positives = 715/1038 (68%), Gaps = 45/1038 (4%)
Query: 5 RLYVYVLQGQDLLA------KDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDD 58
+L V V++ ++L A D YV++Q+GK +S+++++K N NP W E+F F V +++D
Sbjct: 2 KLQVRVVEARNLPAMDLNGFSDPYVRLQLGKQRSRTKVVKKNLNPKWTEDFSFGVDDLND 61
Query: 59 EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNK 118
E LVVSV D+ F + +G+VRV VS + +N L W+ L PK +K + K
Sbjct: 62 E-LVVSVL---DEDKYFND--DFVGQVRVSVSLVFDAENQSLGTVWYPL-NPK-KKGSKK 113
Query: 119 DCGKILLTISLNGKGHNLSSNRLLYLHSN-----VSSNESKELEDPCVLSHDVSCSKAPC 173
DCG+ILL I + K N +L L S+ S + LE P D S +P
Sbjct: 114 DCGEILLKICFSQK------NSVLDLTSSGDQTSASRSPDLRLESPI----DPSTCASPS 163
Query: 174 LDVTEGNHLMKAMVSHLEKIFNKN-------DQGLKTEDSSELS--STPSDYEDCVEEHP 224
+ +IF KN ++ D+S+LS S P + E+
Sbjct: 164 RSDDASSIPQTTFAGRFTQIFQKNAITATPTQSSSRSIDASDLSEISKPVFSLELSEDES 223
Query: 225 PSHNFEEAIKMMQSRENEGDMPENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKDLAEL 284
S +FEE +K M+S++ + P NL GG+++DQL+ +SP DLN LFA DS F L EL
Sbjct: 224 SSTSFEELLKAMESKDQGSEPPSNLSGGVVVDQLFMISPSDLNIVLFASDSSFYASLTEL 283
Query: 285 QGTKDVQEGPWEWKS-GEMTCLTRAVSYMKAATKLVKAVKATEQQTYLKANGQEFAILVT 343
QGT +VQ GPW+ ++ GE + R VSY+KAATKL+KAVK TE+QTYLKA+G+ +A+L +
Sbjct: 284 QGTTEVQIGPWKAENDGE--SVKRVVSYLKAATKLIKAVKGTEEQTYLKADGEVYAVLAS 341
Query: 344 VSTPDVPYGNTFNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQG 403
V+TPDVP+G TF V++LY I PGPEL SGE S L++SW ++F QSTMMRGMIE GARQG
Sbjct: 342 VATPDVPFGGTFKVEVLYCISPGPELPSGEQCSRLVVSWRLNFLQSTMMRGMIENGARQG 401
Query: 404 LKESFEQFANLLAQNLKILDSKDAS-DKDHMLATLQTEQQSDWELASEYFWNFTVVSAGF 462
LK++FEQ+ANLLAQ++K +DSKD +K+ L++LQ E QSDW+LA +YF NFTV+S
Sbjct: 402 LKDNFEQYANLLAQSVKPVDSKDIGLNKEQALSSLQAEPQSDWKLAVQYFANFTVLSTFL 461
Query: 463 MILYVVVHILLCEPSKRQGLEFYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLR 522
+ +YV VHI+ PS QGLEF GLDLPDS GE + G+LV+Q E+V ++ F++AR +
Sbjct: 462 IGIYVFVHIVFAIPSAIQGLEFNGLDLPDSIGEFVVSGVLVLQCERVLQLISRFMQARKQ 521
Query: 523 KGSDHGVKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQ 582
KGSDHG+KA GDGW+LTVAL+EGV+LA+ + +G DPY+VFT NGKTRTSS++ Q +PQ
Sbjct: 522 KGSDHGIKAHGDGWLLTVALIEGVDLAAVDPSGHCDPYIVFTSNGKTRTSSIKFQKSNPQ 581
Query: 583 WHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKL 642
W++I EFDAM +PPSVL+VEVFDFDGPFD+A SLGHAE+NF++ ++LAD+WV L+GKL
Sbjct: 582 WNEIFEFDAMADPPSVLNVEVFDFDGPFDEAVSLGHAEVNFVRSNISDLADVWVPLQGKL 641
Query: 643 AQSAQSKVHLRIFLENNNGVETIKEYLTKMEKEVGKKLNLRSPHRNSTFQKLFALPPEEF 702
AQ+ QSK+HLRIFL++ G + +++YL KMEKEVGKK+N+RSP NS FQKLF LP EEF
Sbjct: 642 AQACQSKLHLRIFLDHTGGGDVVRDYLNKMEKEVGKKINVRSPQTNSAFQKLFGLPQEEF 701
Query: 703 LIKDFTCYLKRKMPLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVG 762
LI DFTC+LKRKMPLQGRLFLSARIVGFYA++FGNKTKFFFLWEDIE+IQ+L P+LA++G
Sbjct: 702 LINDFTCHLKRKMPLQGRLFLSARIVGFYASIFGNKTKFFFLWEDIEEIQVLPPTLASMG 761
Query: 763 SPSLVIILWKGRGLDARHGAKSQDEEGRLRFYFQSFVSFNDASRTIMALWRSRTLTAYQK 822
SP +V+ L RGLDAR GAK+ DEEGRL+F+F SFVSFN A +TIMALW++++LT QK
Sbjct: 762 SPIVVMTLRPNRGLDARIGAKTHDEEGRLKFHFHSFVSFNVAQKTIMALWKAKSLTPEQK 821
Query: 823 EQIAEEQQVQEEMSTAADRGSVPNFEDAKMSKVYNAELPISVKALMEMFDGGKLEHQVME 882
Q EE+ Q+ S + G +D + S+V++ LP+ V ME+F GG+++ + ME
Sbjct: 822 VQAVEEESEQKLQS--EESGLFLGVDDVRFSEVFSLTLPVPVSFFMELFGGGEVDRKAME 879
Query: 883 KSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGWIVNEVM 942
++GC +Y +PW+ K V ER YR ++ +S + GEVT TQQKS + GW+V EVM
Sbjct: 880 RAGCQSYSCSPWESEKDDVYERQTYYR-DKRISRYRGEVTSTQQKSLVPEKNGWLVEEVM 938
Query: 943 SLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHR 1002
+LH VP D+F +H RY++E+S +Y GI WLKST+ Q+R+T+NI R
Sbjct: 939 TLHGVPLGDYFNLHLRYQMEESTSKPKTTYVRVYFGIEWLKSTRHQKRVTKNILVNLQDR 998
Query: 1003 LKEMIELVEREILFATQQ 1020
LK +E+E QQ
Sbjct: 999 LKMTFGFLEKEYSSRQQQ 1016
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8K0T7|UN13C_MOUSE Protein unc-13 homolog C OS=Mus musculus GN=Unc13c PE=1 SV=3 | Back alignment and function description |
|---|
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 25/145 (17%)
Query: 3 STRLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI 56
S ++ + V+ Q L AKD YV VQ+GK+K +++ + N NPVW+E+F F HN
Sbjct: 1215 SAKITITVVSAQGLQAKDKTGSSDPYVTVQVGKNKRRTKTIFGNLNPVWDEKFFFECHNS 1274
Query: 57 DDEELVVSVFQHNDD------SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
D + V V+ +DD S + +G+ V V +++ E + W++LE
Sbjct: 1275 TD-RIKVRVWDEDDDIKSRVKQHFKKESDDFLGQTIVEVRTLSGEMD-----VWYNLE-- 1326
Query: 111 KTRKFTNKDC--GKILLTISLNGKG 133
K T+K G I L I++ KG
Sbjct: 1327 ---KRTDKSAVSGAIRLKINVEIKG 1348
|
May play a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. May be involved in the regulation of synaptic transmission at parallel fiber - Purkinje cell synapses. Mus musculus (taxid: 10090) |
| >sp|Q62770|UN13C_RAT Protein unc-13 homolog C OS=Rattus norvegicus GN=Unc13c PE=1 SV=3 | Back alignment and function description |
|---|
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 25/145 (17%)
Query: 3 STRLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI 56
S ++ + V+ Q L AKD YV VQ+GK+K +++ + N NPVW+E+F F HN
Sbjct: 1209 SAKITITVVSAQGLQAKDKTGSSDPYVTVQVGKNKRRTKTIFGNLNPVWDEKFYFECHNS 1268
Query: 57 DDEELVVSVFQHNDD------SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
D + V V+ +DD S + +G+ V V +++ E + W++LE
Sbjct: 1269 TD-RIKVRVWDEDDDIKSRVKQHFKKESDDFLGQTIVEVRTLSGEMD-----VWYNLE-- 1320
Query: 111 KTRKFTNKDC--GKILLTISLNGKG 133
K T+K G I L I++ KG
Sbjct: 1321 ---KRTDKSAVSGAIRLKINVEIKG 1342
|
May play a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. May be involved in the regulation of synaptic transmission at parallel fiber - Purkinje cell synapses. Rattus norvegicus (taxid: 10116) |
| >sp|Q8NB66|UN13C_HUMAN Protein unc-13 homolog C OS=Homo sapiens GN=UNC13C PE=2 SV=3 | Back alignment and function description |
|---|
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 25/145 (17%)
Query: 3 STRLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI 56
S ++ + V+ Q L AKD YV VQ+GK+K +++ + N NPVW+E+F F HN
Sbjct: 1219 SAKITITVVSAQGLQAKDKTGSSDPYVTVQVGKNKRRTKTIFGNLNPVWDEKFYFECHNS 1278
Query: 57 DDEELVVSVFQHNDD------SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
D + V V+ +DD S + +G+ V V +++ E + W++LE
Sbjct: 1279 TD-RIKVRVWDEDDDIKSRVKQHFKKESDDFLGQTIVEVRTLSGEMD-----VWYNLE-- 1330
Query: 111 KTRKFTNKDC--GKILLTISLNGKG 133
K T+K G I L I++ KG
Sbjct: 1331 ---KRTDKSAVSGAIRLKINVEIKG 1352
|
May play a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. May be involved in the regulation of synaptic transmission at parallel fiber - Purkinje cell synapses. Homo sapiens (taxid: 9606) |
| >sp|Q9Z1N9|UN13B_MOUSE Protein unc-13 homolog B OS=Mus musculus GN=Unc13b PE=2 SV=2 | Back alignment and function description |
|---|
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 72/145 (49%), Gaps = 25/145 (17%)
Query: 3 STRLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI 56
S ++ + V+ Q L AKD YV VQ+GK K +++ + N NPVW E+F F HN
Sbjct: 611 SAKITITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIFGNLNPVWEEKFHFECHNS 670
Query: 57 DDEELVVSVFQHNDD------SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
D + V V+ +DD L S + +G+ + V +++ E + W++LE
Sbjct: 671 SD-RIKVRVWDEDDDIKSRVKQRLKRESDDFLGQTIIEVRTLSGEMD-----VWYNLE-- 722
Query: 111 KTRKFTNKDC--GKILLTISLNGKG 133
K T+K G I L IS+ KG
Sbjct: 723 ---KRTDKSAVSGAIRLQISVEIKG 744
|
Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Is involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-depending refilling of readily releasable vesicle pool (RRP) (By similarity). Essential for synaptic vesicle maturation in a subset of excitatory/glutamatergic but not inhibitory/GABA-mediated synapses. Mus musculus (taxid: 10090) |
| >sp|P27715|UNC13_CAEEL Phorbol ester/diacylglycerol-binding protein unc-13 OS=Caenorhabditis elegans GN=unc-13 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 25/145 (17%)
Query: 3 STRLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI 56
S ++ + VL Q L+AKD YV Q+GK K ++R + NPVWNE+F F HN
Sbjct: 1156 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS 1215
Query: 57 DDEELVVSVFQHNDD------SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
D + V V+ ++D L S + +G+ + V +++ E + W++LE
Sbjct: 1216 TD-RIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLSGEMD-----VWYNLE-- 1267
Query: 111 KTRKFTNKDC--GKILLTISLNGKG 133
K T+K G I L I++ KG
Sbjct: 1268 ---KRTDKSAVSGAIRLHINVEIKG 1289
|
May form part of a signal transduction pathway, transducing the signal from diacylglycerol to effector functions. One such function could be the release of neurotransmitter from neurons. Caenorhabditis elegans (taxid: 6239) |
| >sp|Q62769|UN13B_RAT Protein unc-13 homolog B OS=Rattus norvegicus GN=Unc13b PE=1 SV=2 | Back alignment and function description |
|---|
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 25/145 (17%)
Query: 3 STRLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI 56
S ++ + V+ Q L AKD YV VQ+GK K +++ + N NPVW E+F F HN
Sbjct: 612 SAKITITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIFGNLNPVWEEKFHFECHNS 671
Query: 57 DDEELVVSVFQHNDD------SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
D + V V+ +DD L S + +G+ + V +++ E + W++LE
Sbjct: 672 SD-RIKVRVWDEDDDIKSRVKQRLKRESDDFLGQTIIEVRTLSGEMD-----VWYNLE-- 723
Query: 111 KTRKFTNKDC--GKILLTISLNGKG 133
K T+K G I L I++ KG
Sbjct: 724 ---KRTDKSAVSGAIRLQINVEIKG 745
|
Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Is involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-depending refilling of readily releasable vesicle pool (RRP), Essential for synaptic vesicle maturation in a subset of excitatory/glutamatergic but not inhibitory/GABA-mediated synapses. Rattus norvegicus (taxid: 10116) |
| >sp|O42976|YGZ7_SCHPO Uncharacterized membrane protein C20F10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC20F10.07 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 21/129 (16%)
Query: 687 RNSTFQKLF-ALPPEEFLIKDFTCYLKRKMPLQGRLFLSARIVGFYANLFGNKTKFFFLW 745
RN F ++F LPPE+ LI D+ C L+R + L GR++LS + F +++FG W
Sbjct: 195 RNRDFHRIFKVLPPEDHLIDDYGCALQRDIFLHGRMYLSESHICFNSSIFG--------W 246
Query: 746 EDIEDIQILSPSLATVGSPSLVIILWKGRGLDARHGAKSQDEEGRLRFYFQSFVSFNDAS 805
+ +I I + +V S ++ + H R+ F SF+S +
Sbjct: 247 --VTNIVIPVTEIVSVEKKSTAVVFPNAIQITTLHA----------RYIFASFISRDTTY 294
Query: 806 RTIMALWRS 814
+ I+A+W++
Sbjct: 295 QLIIAIWKN 303
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|O14795|UN13B_HUMAN Protein unc-13 homolog B OS=Homo sapiens GN=UNC13B PE=1 SV=2 | Back alignment and function description |
|---|
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 25/145 (17%)
Query: 3 STRLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI 56
S ++ + V+ Q L AKD YV VQ+ K K +++ + N NPVW E+F F HN
Sbjct: 599 SAKITITVVCAQGLQAKDKTGSSDPYVTVQVSKTKKRTKTIFGNLNPVWEEKFHFECHNS 658
Query: 57 DDEELVVSVFQHNDD------SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
D + V V+ +DD L S + +G+ + V +++ E + W++LE
Sbjct: 659 SD-RIKVRVWDEDDDIKSRVKQRLKRESDDFLGQTIIEVRTLSGEMD-----VWYNLE-- 710
Query: 111 KTRKFTNKDC--GKILLTISLNGKG 133
K T+K G I L IS+ KG
Sbjct: 711 ---KRTDKSAVSGAIRLQISVEIKG 732
|
Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Is involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-depending refilling of readily releasable vesicle pool (RRP). Essential for synaptic vesicle maturation in a subset of excitatory/glutamatergic but not inhibitory/GABA-mediated synapses. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1024 | ||||||
| 359491211 | 1021 | PREDICTED: C2 and GRAM domain-containing | 0.993 | 0.996 | 0.717 | 0.0 | |
| 297733711 | 1060 | unnamed protein product [Vitis vinifera] | 0.991 | 0.957 | 0.717 | 0.0 | |
| 255540521 | 1022 | conserved hypothetical protein [Ricinus | 0.992 | 0.994 | 0.707 | 0.0 | |
| 224133662 | 1039 | predicted protein [Populus trichocarpa] | 0.988 | 0.974 | 0.682 | 0.0 | |
| 356507290 | 1014 | PREDICTED: C2 and GRAM domain-containing | 0.982 | 0.992 | 0.663 | 0.0 | |
| 356518944 | 1017 | PREDICTED: C2 and GRAM domain-containing | 0.982 | 0.989 | 0.658 | 0.0 | |
| 357461815 | 1014 | GRAM domain-containing protein 1B [Medic | 0.982 | 0.992 | 0.630 | 0.0 | |
| 15240629 | 1027 | C2 and GRAM domain-containing protein [A | 0.981 | 0.978 | 0.581 | 0.0 | |
| 297792313 | 1028 | C2 domain-containing protein [Arabidopsi | 0.981 | 0.977 | 0.580 | 0.0 | |
| 359495634 | 1030 | PREDICTED: C2 and GRAM domain-containing | 0.965 | 0.960 | 0.520 | 0.0 |
| >gi|359491211|ref|XP_002277671.2| PREDICTED: C2 and GRAM domain-containing protein At5g50170-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1523 bits (3943), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 733/1021 (71%), Positives = 863/1021 (84%), Gaps = 4/1021 (0%)
Query: 5 RLYVYVLQGQDLLAKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVS 64
RLY YVL+G+DL +DSYVK+Q+GK KSK+R+L+ + NPVWNEEF FRVH++ E L++S
Sbjct: 2 RLYAYVLEGRDLCVEDSYVKLQLGKFKSKTRVLRRSRNPVWNEEFAFRVHDVGGE-LILS 60
Query: 65 VFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKIL 124
V H+DDSG F SS EL+GRVR+PVS++ A++N LPPTWFSLE ++ KF +K+ GKIL
Sbjct: 61 VLHHDDDSGFFNSSNELVGRVRIPVSAVLAKENQTLPPTWFSLERGRSGKFISKEYGKIL 120
Query: 125 LTISLNGKGHNLSSNRLLYLHSNVSSNESKELEDPCVLSHDVSCSKAPCLDVTEGNHLMK 184
LTISL+G+ + +++ LY HS V + + KE E V S D+ S V EG LMK
Sbjct: 121 LTISLHGRSQDTTADHPLYAHSRVKTRDFKEWEG-LVESEDIVSSNTSTWKVPEGKQLMK 179
Query: 185 AMVSHLEKIFNKNDQGLKTEDSSELSSTPSDYEDCVEEHPPSH-NFEEAIKMMQSRENEG 243
A+ S LEK+ KN++ K +DSSE+SS PSDYEDC+EE PS +FEEAI++MQSR E
Sbjct: 180 AIASRLEKLLGKNEETSKMDDSSEVSSIPSDYEDCIEEQRPSCCSFEEAIELMQSRNGEQ 239
Query: 244 DMPENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWKSGEMT 303
+MPENLQGGILLDQ Y V+ LN LFAP+SQFR+DLAELQ T +++EGPW WKSG ++
Sbjct: 240 EMPENLQGGILLDQTYIVASKVLNMLLFAPNSQFRQDLAELQRTTNMKEGPWTWKSGALS 299
Query: 304 CLTRAVSYMKAATKLVKAVKATEQQTYLKANGQEFAILVTVSTPDVPYGNTFNVQLLYKI 363
CLTR VSY +AATKLVKAV A E+QTY+KA+G+EFA+LV V TPDVPYGN+F V+LLYKI
Sbjct: 300 CLTRVVSYTQAATKLVKAVDALEEQTYIKADGREFAVLVNVDTPDVPYGNSFKVELLYKI 359
Query: 364 IPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKESFEQFANLLAQNLKILD 423
+PGPELSSGE+SSHL++SWG+ F Q+T+MRGMIEGGARQGLKESF+QFANLLAQN K L
Sbjct: 360 MPGPELSSGEESSHLVVSWGLSFSQNTIMRGMIEGGARQGLKESFDQFANLLAQNFKTLG 419
Query: 424 SKDASDKDHMLATLQTEQQSDWELASEYFWNFTVVSAGFMILYVVVHILLCEPSKRQGLE 483
S D+ DKD MLATLQTEQQSDWELA+EYF NFTVVSA FM++Y++VHILL S++QGLE
Sbjct: 420 SIDSLDKDQMLATLQTEQQSDWELATEYFGNFTVVSAFFMVIYILVHILLSVRSEQQGLE 479
Query: 484 FYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVKAQGDGWVLTVALV 543
F GLDLPDSFGELI+CGILVIQLE+V+ M+ HFV+AR ++GSDHGVKAQGDGWVLTVAL+
Sbjct: 480 FSGLDLPDSFGELITCGILVIQLERVYAMILHFVQARFQRGSDHGVKAQGDGWVLTVALI 539
Query: 544 EGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEV 603
EG+NLAS + TGLSDPYVVFTCNGKTRTSSV+LQT DPQW++ILEFDAMEEPP+VLDVEV
Sbjct: 540 EGINLASLDSTGLSDPYVVFTCNGKTRTSSVKLQTHDPQWNEILEFDAMEEPPAVLDVEV 599
Query: 604 FDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNGVE 663
FDFDGPFD+A SLGHAEINFL+HTSTELADMWVSLEGKLAQS+QSK+HLRIFL+NNNGVE
Sbjct: 600 FDFDGPFDEAASLGHAEINFLRHTSTELADMWVSLEGKLAQSSQSKLHLRIFLDNNNGVE 659
Query: 664 TIKEYLTKMEKEVGKKLNLRSPHRNSTFQKLFALPPEEFLIKDFTCYLKRKMPLQGRLFL 723
TIKEYL KMEKEVGKK+ L+SPHRNSTF LF LPPEEFLI DFTCYLKRK+PLQGRLFL
Sbjct: 660 TIKEYLAKMEKEVGKKITLQSPHRNSTFLALFGLPPEEFLINDFTCYLKRKVPLQGRLFL 719
Query: 724 SARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGRGLDARHGAK 783
SARIVGFYANLFG+KTKFFFLWEDIEDIQ+ PSLA++GSPSLVIIL KGRGLDARHGAK
Sbjct: 720 SARIVGFYANLFGHKTKFFFLWEDIEDIQVHPPSLASLGSPSLVIILRKGRGLDARHGAK 779
Query: 784 SQDEEGRLRFYFQSFVSFNDASRTIMALWRSRTLTAYQKEQIAEEQQVQEEMS-TAADRG 842
SQDEEGRL+FYFQSFVSFN ASRTIMALWR+RTLT QK QIA+EQQ ++ S D G
Sbjct: 780 SQDEEGRLKFYFQSFVSFNVASRTIMALWRTRTLTPEQKAQIADEQQDEDGSSLLLEDPG 839
Query: 843 SVPNFEDAKMSKVYNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVC 902
SV N E+AKMSKVY+AELPI +K+LMEMFDGG LEH++MEKSG NY T W+ VKP +
Sbjct: 840 SVFNVEEAKMSKVYSAELPIDIKSLMEMFDGGNLEHKIMEKSGYLNYKATGWETVKPDLY 899
Query: 903 ERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDHFRVHFRYEIE 962
ERHL ++FNRHVSIFGGEVTCTQ+KSP+ + GWI+NEVM+LHD+PF DHFRVHFRY+IE
Sbjct: 900 ERHLCFKFNRHVSIFGGEVTCTQKKSPIGNDNGWILNEVMALHDIPFGDHFRVHFRYQIE 959
Query: 963 KSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREILFATQQDA 1022
LA CKC +++ I WLKST FQQRIT+NITEKFT RLKE+IELVERE L QD+
Sbjct: 960 NFGLAPGKCKCEVHMEILWLKSTVFQQRITRNITEKFTSRLKEIIELVEREALLNCPQDS 1019
Query: 1023 S 1023
S
Sbjct: 1020 S 1020
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297733711|emb|CBI14958.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1517 bits (3928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 732/1020 (71%), Positives = 861/1020 (84%), Gaps = 5/1020 (0%)
Query: 5 RLYVYVLQGQDLLAKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVS 64
RLY YVL+G+DL +DSYVK+Q+GK KSK+R+L+ + NPVWNEEF FRVH++ E L++S
Sbjct: 2 RLYAYVLEGRDLCVEDSYVKLQLGKFKSKTRVLRRSRNPVWNEEFAFRVHDVGGE-LILS 60
Query: 65 VFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKD-CGKI 123
V H+DDSG F SS EL+GRVR+PVS++ A++N LPPTWFSLE ++ KF +K+ GKI
Sbjct: 61 VLHHDDDSGFFNSSNELVGRVRIPVSAVLAKENQTLPPTWFSLERGRSGKFISKEYAGKI 120
Query: 124 LLTISLNGKGHNLSSNRLLYLHSNVSSNESKELEDPCVLSHDVSCSKAPCLDVTEGNHLM 183
LLTISL+G+ + +++ LY HS V + + KE E V S D+ S V EG LM
Sbjct: 121 LLTISLHGRSQDTTADHPLYAHSRVKTRDFKEWEG-LVESEDIVSSNTSTWKVPEGKQLM 179
Query: 184 KAMVSHLEKIFNKNDQGLKTEDSSELSSTPSDYEDCVEEHPPSH-NFEEAIKMMQSRENE 242
KA+ S LEK+ KN++ K +DSSE+SS PSDYEDC+EE PS +FEEAI++MQSR E
Sbjct: 180 KAIASRLEKLLGKNEETSKMDDSSEVSSIPSDYEDCIEEQRPSCCSFEEAIELMQSRNGE 239
Query: 243 GDMPENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWKSGEM 302
+MPENLQGGILLDQ Y V+ LN LFAP+SQFR+DLAELQ T +++EGPW WKSG +
Sbjct: 240 QEMPENLQGGILLDQTYIVASKVLNMLLFAPNSQFRQDLAELQRTTNMKEGPWTWKSGAL 299
Query: 303 TCLTRAVSYMKAATKLVKAVKATEQQTYLKANGQEFAILVTVSTPDVPYGNTFNVQLLYK 362
+CLTR VSY +AATKLVKAV A E+QTY+KA+G+EFA+LV V TPDVPYGN+F V+LLYK
Sbjct: 300 SCLTRVVSYTQAATKLVKAVDALEEQTYIKADGREFAVLVNVDTPDVPYGNSFKVELLYK 359
Query: 363 IIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKESFEQFANLLAQNLKIL 422
I+PGPELSSGE+SSHL++SWG+ F Q+T+MRGMIEGGARQGLKESF+QFANLLAQN K L
Sbjct: 360 IMPGPELSSGEESSHLVVSWGLSFSQNTIMRGMIEGGARQGLKESFDQFANLLAQNFKTL 419
Query: 423 DSKDASDKDHMLATLQTEQQSDWELASEYFWNFTVVSAGFMILYVVVHILLCEPSKRQGL 482
S D+ DKD MLATLQTEQQSDWELA+EYF NFTVVSA FM++Y++VHILL S++QGL
Sbjct: 420 GSIDSLDKDQMLATLQTEQQSDWELATEYFGNFTVVSAFFMVIYILVHILLSVRSEQQGL 479
Query: 483 EFYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVKAQGDGWVLTVAL 542
EF GLDLPDSFGELI+CGILVIQLE+V+ M+ HFV+AR ++GSDHGVKAQGDGWVLTVAL
Sbjct: 480 EFSGLDLPDSFGELITCGILVIQLERVYAMILHFVQARFQRGSDHGVKAQGDGWVLTVAL 539
Query: 543 VEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVE 602
+EG+NLAS + TGLSDPYVVFTCNGKTRTSSV+LQT DPQW++ILEFDAMEEPP+VLDVE
Sbjct: 540 IEGINLASLDSTGLSDPYVVFTCNGKTRTSSVKLQTHDPQWNEILEFDAMEEPPAVLDVE 599
Query: 603 VFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNGV 662
VFDFDGPFD+A SLGHAEINFL+HTSTELADMWVSLEGKLAQS+QSK+HLRIFL+NNNGV
Sbjct: 600 VFDFDGPFDEAASLGHAEINFLRHTSTELADMWVSLEGKLAQSSQSKLHLRIFLDNNNGV 659
Query: 663 ETIKEYLTKMEKEVGKKLNLRSPHRNSTFQKLFALPPEEFLIKDFTCYLKRKMPLQGRLF 722
ETIKEYL KMEKEVGKK+ L+SPHRNSTF LF LPPEEFLI DFTCYLKRK+PLQGRLF
Sbjct: 660 ETIKEYLAKMEKEVGKKITLQSPHRNSTFLALFGLPPEEFLINDFTCYLKRKVPLQGRLF 719
Query: 723 LSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGRGLDARHGA 782
LSARIVGFYANLFG+KTKFFFLWEDIEDIQ+ PSLA++GSPSLVIIL KGRGLDARHGA
Sbjct: 720 LSARIVGFYANLFGHKTKFFFLWEDIEDIQVHPPSLASLGSPSLVIILRKGRGLDARHGA 779
Query: 783 KSQDEEGRLRFYFQSFVSFNDASRTIMALWRSRTLTAYQKEQIAEEQQVQEEMS-TAADR 841
KSQDEEGRL+FYFQSFVSFN ASRTIMALWR+RTLT QK QIA+EQQ ++ S D
Sbjct: 780 KSQDEEGRLKFYFQSFVSFNVASRTIMALWRTRTLTPEQKAQIADEQQDEDGSSLLLEDP 839
Query: 842 GSVPNFEDAKMSKVYNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGV 901
GSV N E+AKMSKVY+AELPI +K+LMEMFDGG LEH++MEKSG NY T W+ VKP +
Sbjct: 840 GSVFNVEEAKMSKVYSAELPIDIKSLMEMFDGGNLEHKIMEKSGYLNYKATGWETVKPDL 899
Query: 902 CERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDHFRVHFRYEI 961
ERHL ++FNRHVSIFGGEVTCTQ+KSP+ + GWI+NEVM+LHD+PF DHFRVHFRY+I
Sbjct: 900 YERHLCFKFNRHVSIFGGEVTCTQKKSPIGNDNGWILNEVMALHDIPFGDHFRVHFRYQI 959
Query: 962 EKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREILFATQQD 1021
E LA CKC +++ I WLKST FQQRIT+NITEKFT RLKE+IELVERE L QD
Sbjct: 960 ENFGLAPGKCKCEVHMEILWLKSTVFQQRITRNITEKFTSRLKEIIELVEREALLNCPQD 1019
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540521|ref|XP_002511325.1| conserved hypothetical protein [Ricinus communis] gi|223550440|gb|EEF51927.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1510 bits (3910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 725/1025 (70%), Positives = 865/1025 (84%), Gaps = 9/1025 (0%)
Query: 5 RLYVYVLQGQDLLAKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVS 64
RLYVYVLQ ++L KDS+V +QIGKH SK+R+LK+++NPVWNEEFVFRVH+ D +LVVS
Sbjct: 2 RLYVYVLQAKELPVKDSFVTLQIGKHNSKTRVLKDSANPVWNEEFVFRVHDTD-VDLVVS 60
Query: 65 VFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKIL 124
VF +N D SG+L+GRVR+PV SI+AE+NH LPPTWFSLE P T KF N D GKIL
Sbjct: 61 VFNYNHDHR---GSGDLLGRVRIPVCSISAENNHSLPPTWFSLEKPLTGKFINMDNGKIL 117
Query: 125 LTISLNGKGHNLSSNRLLYLHSNVSSNESKELEDPCVLSHDVSCSKAPCLDVTEGNHLMK 184
LT+SL+GKGH+ ++N + ++N + KE E P V S + CSKAP L +T+G LMK
Sbjct: 118 LTLSLHGKGHDFATNHFINANANPTDEGHKEYEGPYVSSGGMCCSKAPLLKLTDGKKLMK 177
Query: 185 AMVSHLEKIFNKNDQGLKTEDSSELSSTPSDYEDCVEEHPPSHNFEEAIKMMQSRENEGD 244
+ S LE++FNKN++ L+ + SSE +S SDYEDC EE P S +FEEA+++M S NE +
Sbjct: 178 TIASRLERVFNKNEEALRVDSSSESASASSDYEDCPEEPPSSCSFEEAMEIMNSNGNEEE 237
Query: 245 ---MPENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWKSGE 301
MPENL GGILLDQ+Y V CDLN FLFAPDSQFRKD+AE+QGT DV+EGPW WKS
Sbjct: 238 EEEMPENLHGGILLDQIYAVPSCDLNKFLFAPDSQFRKDIAEMQGTTDVEEGPWTWKSVN 297
Query: 302 MTCLTRAVSYMKAATKLVKAVKATEQQTYLKANGQEFAILVTVSTPDVPYGNTFNVQLLY 361
M+ LTR V+Y KAATKLVKAVKATE+QTY++A+G++FA+ V VSTPDVPYG TF+++LLY
Sbjct: 298 MSHLTRIVTYTKAATKLVKAVKATEEQTYIRADGRQFAVFVNVSTPDVPYGRTFHIELLY 357
Query: 362 KIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKESFEQFANLLAQNLKI 421
KI+PGP++ SGE+SS LIISWGI+FHQ+TM++GMIEGGARQGLKESF+QFANLLA+N KI
Sbjct: 358 KIVPGPQVPSGEESSRLIISWGINFHQNTMLKGMIEGGARQGLKESFDQFANLLAKNFKI 417
Query: 422 LDSKDASDKDHMLATLQTEQQSDWELASEYFWNFTVVSAGFMILYVVVHILLCEPSKRQG 481
LDS D S KDH+L TL+ E +SDWE+ASEYF NFTVVS FM YVV+HILLCEPSK QG
Sbjct: 418 LDSTDLSKKDHVLTTLEAEHESDWEMASEYFLNFTVVSTVFMTFYVVLHILLCEPSKVQG 477
Query: 482 LEFYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVKAQGDGWVLTVA 541
LE GLDLPDSFG+L +C ILV QLE+V+NMV HF++ARL++GSDHG+KA G+GWVLTVA
Sbjct: 478 LEINGLDLPDSFGQLFTCAILVTQLERVYNMVSHFIQARLQRGSDHGIKAHGNGWVLTVA 537
Query: 542 LVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDV 601
L+EG+NLAS + TGLSDPYVVFTCNGKTRTSSV+LQ+ +PQW+DILEFDAMEEPPSVLDV
Sbjct: 538 LIEGINLASLDSTGLSDPYVVFTCNGKTRTSSVKLQSSNPQWNDILEFDAMEEPPSVLDV 597
Query: 602 EVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNG 661
EVFDFDGPFDQATSLGH EINFLKHTSTELADMW+SLEGKLAQS+QSK+HLRI+L+N+ G
Sbjct: 598 EVFDFDGPFDQATSLGHTEINFLKHTSTELADMWISLEGKLAQSSQSKLHLRIYLDNSKG 657
Query: 662 VETIKEYLTKMEKEVGKKLNLRSPHRNSTFQKLFALPPEEFLIKDFTCYLKRKMPLQGRL 721
VETIKEY+TK+EKEVG KLNLRSPHRNSTFQKLF LPPEEFLI DFTCYLKRKMPLQGRL
Sbjct: 658 VETIKEYITKVEKEVGTKLNLRSPHRNSTFQKLFGLPPEEFLISDFTCYLKRKMPLQGRL 717
Query: 722 FLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGRGLDARHG 781
FLS+RIVGFYANLFG+KTKFFFLWEDIEDI +L PSL++VG P+LVI+L KGRGLDARHG
Sbjct: 718 FLSSRIVGFYANLFGHKTKFFFLWEDIEDIHVLPPSLSSVGIPTLVIVLRKGRGLDARHG 777
Query: 782 AKSQDEEGRLRFYFQSFVSFNDASRTIMALWRSRTLTAYQKEQIAEEQQVQEEMSTAA-- 839
AK+ DEEGRLR++FQSFVSFN ASRTIMALWR+R LT QK IAEEQQ +E S
Sbjct: 778 AKTLDEEGRLRYHFQSFVSFNTASRTIMALWRTRMLTPEQKALIAEEQQQDQEESPVMLE 837
Query: 840 DRGSVPNFEDAKMSKVYNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKP 899
D G + E+AKMS+VY+AELPIS+K+LME+F GGK+EH++MEKSGC NY TT W+ VK
Sbjct: 838 DSGPLLVAEEAKMSRVYSAELPISIKSLMEIFGGGKMEHKIMEKSGCLNYATTAWESVKS 897
Query: 900 GVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDHFRVHFRY 959
GV ERH+SY+FNRHVSIFGGEV+CTQQKSP+ + GWIVNEVM L VPF DHFRV+ RY
Sbjct: 898 GVFERHVSYKFNRHVSIFGGEVSCTQQKSPIENDGGWIVNEVMVLQSVPFGDHFRVNVRY 957
Query: 960 EIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREILFATQ 1019
IE+S LAH+AC+C +Y+G +WLKSTKFQQRIT+NITEKFTHR+ E+ EL+ERE+LF Q
Sbjct: 958 RIEQSSLAHSACRCDVYVGTTWLKSTKFQQRITRNITEKFTHRMNEIFELLEREVLFTIQ 1017
Query: 1020 QDASV 1024
+ +
Sbjct: 1018 HGSII 1022
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224133662|ref|XP_002321630.1| predicted protein [Populus trichocarpa] gi|222868626|gb|EEF05757.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1451 bits (3757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 701/1027 (68%), Positives = 845/1027 (82%), Gaps = 15/1027 (1%)
Query: 5 RLYVYVLQGQDLLAKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVH-NIDDEELVV 63
RLYVYVLQG+ L KD+Y +Q+GKHKSK+R+ +NNSNPV NEEFVFRV+ N D +ELVV
Sbjct: 2 RLYVYVLQGKGLAVKDTYFILQVGKHKSKTRVFRNNSNPVMNEEFVFRVNGNNDQQELVV 61
Query: 64 SVFQHNDD-----SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNK 118
SVF H+DD F SG+L+GRV++PV S+AAE N LPPTWFSLE P T KF N
Sbjct: 62 SVFNHDDDDDDDFGSFFNGSGDLVGRVQIPVWSVAAEQNQTLPPTWFSLEKPMTDKFINM 121
Query: 119 DCGKILLTISLNGKGHNLSSNRLLYLHSNVSSNESKELEDPCVLSHDVSCSKAPCLDVTE 178
DCGKILL++SL+ K S+N +Y +SNV+ + KE E PC+ SH + KAP + + E
Sbjct: 122 DCGKILLSLSLSRKCDKSSTNHFVYANSNVN-EDYKESEGPCISSHGMHGCKAPRVKIAE 180
Query: 179 GNHLMKAMVSHLEKIFNKNDQGLKTEDSSELSSTPSDYEDCVEEHPPSHNFEEAIKMMQS 238
G LMK +VS LE++FNK+++ +T+DSSEL+S SD EDC +H S +F E +++M S
Sbjct: 181 GKKLMKTIVSRLERVFNKHEENSRTDDSSELTSASSDCEDC--DHSSSCSFVEGLEIMSS 238
Query: 239 RENEGDMPENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWK 298
R+NE +MPENLQGGILLD++Y V DLN FLFAP+S F KDL ELQGT D +EGPW+ K
Sbjct: 239 RDNEQEMPENLQGGILLDKIYVVPSWDLNMFLFAPNSLFMKDLEELQGTTDAEEGPWKRK 298
Query: 299 SGEMTCLTRAVSYMKAATKLVKAVKATEQQTYLKANGQEFAILVTVSTPDVPYGNTFNVQ 358
S M+ LTR VSY KAATKLVK+VKATE+QTY+KA+G+EFA+L VSTP+VPYGNTFN++
Sbjct: 299 SANMSHLTRTVSYTKAATKLVKSVKATEEQTYIKADGKEFAVLTNVSTPEVPYGNTFNIE 358
Query: 359 LLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKESFEQFANLLAQN 418
LLYKI+PGPE+SSGE SSHL+ISWGI+F +STMM+GMIEGGARQGLKESF+QFANLLAQN
Sbjct: 359 LLYKILPGPEISSGEASSHLLISWGINFCKSTMMKGMIEGGARQGLKESFDQFANLLAQN 418
Query: 419 LKILDSKDASDKDHMLATLQTEQQSDWELASEYFWNFTVVSAGFMILYVVVHILLCEPSK 478
K +DS D+S+KDHMLA L+ QS+W+LAS++FWNFT VS FMILYVVVHI CEPS
Sbjct: 419 FKTMDSMDSSNKDHMLAKLEAAHQSEWQLASDFFWNFTAVSTIFMILYVVVHIFFCEPSI 478
Query: 479 RQGLEFYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVKAQGDGWVL 538
QGLEF GLDLPDSFG+LI+C ILVIQLE+V NM+ HF++ARL++GSDHGV+AQG+GWVL
Sbjct: 479 VQGLEFNGLDLPDSFGQLITCAILVIQLERVCNMMKHFIQARLQRGSDHGVRAQGEGWVL 538
Query: 539 TVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSV 598
TVAL+EG NL S + TGLSDPYVV TCNGKTRTSS+QL T DPQW++ILEFDAM+EPPSV
Sbjct: 539 TVALIEGTNLPSLDSTGLSDPYVVLTCNGKTRTSSIQLHTSDPQWNEILEFDAMDEPPSV 598
Query: 599 LDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLEN 658
LDVEVFDFDGPFDQATSLGHAEI FLKHTSTELADMW+ LEGKL+QS+QSK+HLRIF++N
Sbjct: 599 LDVEVFDFDGPFDQATSLGHAEIMFLKHTSTELADMWIPLEGKLSQSSQSKLHLRIFIDN 658
Query: 659 NNGVETIKEYLTKMEKEVGKKLNLRSPHRNSTFQKLFALPPEEFLIKDFTCYLKRKMPLQ 718
+ GVET+KEYLTKMEKEVGKKLNL SPHRNSTFQKLF LPPEEFLI DFTC LKRKMPLQ
Sbjct: 659 DKGVETVKEYLTKMEKEVGKKLNLPSPHRNSTFQKLFELPPEEFLINDFTCQLKRKMPLQ 718
Query: 719 ----GRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGR 774
GRLFLSARI+GFY+NLFG+KTKFFFLWEDIEDIQ+ PSL++VGSP LVIIL +GR
Sbjct: 719 VRVTGRLFLSARILGFYSNLFGHKTKFFFLWEDIEDIQVHPPSLSSVGSPFLVIILRRGR 778
Query: 775 GLDARHGAKSQDEEGRLRFYFQSFVSFNDASRTIMALWRSRTLTAYQKEQIAEEQQVQEE 834
GL AR AKSQDEEGRLR++FQSF+SFN ASRTIMALW+++T+ K Q+AEEQ EE
Sbjct: 779 GLHARRWAKSQDEEGRLRYHFQSFISFNIASRTIMALWKTKTMIPEHKTQLAEEQPQDEE 838
Query: 835 MSTAA--DRGSVPNFEDAKMSKVYNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTT 892
+ D G + E+ KM K+++AELP SV++LMEMFDGGK+EH++MEKSG +Y TT
Sbjct: 839 KRSIMLEDYGCSVSPEEVKMPKIFSAELPFSVESLMEMFDGGKMEHEIMEKSGRLSYATT 898
Query: 893 PWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDH 952
W+ VKPGV ER ++YRF H+SIFGGEVTCTQ KSPL + +GW VNE+ +HDVPF D+
Sbjct: 899 AWESVKPGVFERQITYRFKHHISIFGGEVTCTQHKSPLENDKGWTVNELTVMHDVPFADY 958
Query: 953 FRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVER 1012
F V+ RY+IEKS LAH ACKC +Y+GI+WLKSTKFQQRIT+NIT+KFT +KE+ EL++R
Sbjct: 959 FHVNLRYQIEKSSLAHCACKCGVYVGITWLKSTKFQQRITRNITDKFTQIMKEVFELIKR 1018
Query: 1013 EILFATQ 1019
E LFA
Sbjct: 1019 EKLFANH 1025
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507290|ref|XP_003522401.1| PREDICTED: C2 and GRAM domain-containing protein At5g50170-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1390 bits (3598), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 675/1017 (66%), Positives = 821/1017 (80%), Gaps = 11/1017 (1%)
Query: 5 RLYVYVLQGQDLLAKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVS 64
RLYV VL+ +DL KD+YVK+++GK K ++RIL+N SNPVWN+EF F VH +D LVVS
Sbjct: 3 RLYVCVLEAKDLPVKDTYVKLRLGKFKCRTRILRNTSNPVWNKEFGFNVHGAEDM-LVVS 61
Query: 65 VFQHND--DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGK 122
V H++ + + S E +G VR+PV S+A ED PTWFSLE+PK+ KF N+ CGK
Sbjct: 62 VVNHDNINECRVTNGSVEFVGEVRIPVGSVAFEDKQTFLPTWFSLESPKSGKFFNEYCGK 121
Query: 123 ILLTISLNGKGHNLSSNRLLYLHSNVSSNESKELEDPCVLSHDVSCSKAPCLDVTEGNHL 182
ILLT+SL+GKG + N +S ++ + S++LE V+C + PC + G L
Sbjct: 122 ILLTVSLHGKGRSSFINHKHSSNSTIAVDNSRDLE-----GLHVAC-QVPCDKMGAGKQL 175
Query: 183 MKAMVSHLEKIFNKNDQGLKTEDSSELSSTPSDYEDCVEEHPPSHNFEEAIKMMQSRENE 242
+KA+ + L +IF K ++ K+ DSSELS++ SDYED V+E+ +FEEAI +M+S +++
Sbjct: 176 LKAIANGLHRIFKKKEENSKSGDSSELSTSLSDYEDSVQENSSPCSFEEAIALMESGDDK 235
Query: 243 GDMPENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWKSGEM 302
+MPENL GG+L+DQ+Y VSP DLN FLFAP+SQF KD+ ELQGT +VQEGPW WK+G+M
Sbjct: 236 PEMPENLPGGVLVDQIYLVSPNDLNVFLFAPNSQFSKDMVELQGTTNVQEGPWTWKNGDM 295
Query: 303 TCLTRAVSYMKAATKLVKAVKATEQQTYLKANGQEFAILVTVSTPDVPYGNTFNVQLLYK 362
+CLTR V+Y KAATKL+KAV A E+QTY++ + +EFAILV+VSTP+VPYGN+F ++LLYK
Sbjct: 296 SCLTRVVTYTKAATKLIKAVNAIEEQTYIRVSRKEFAILVSVSTPEVPYGNSFRIELLYK 355
Query: 363 IIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKESFEQFANLLAQNLKIL 422
I+PG E SSGE+SSHL++SWGI F QSTMM+GMIEGGARQGLKES QF++ LA N K+L
Sbjct: 356 IMPG-EASSGEESSHLVVSWGIVFLQSTMMKGMIEGGARQGLKESLVQFSDQLALNFKVL 414
Query: 423 DSKDASDKDHMLATLQTEQQSDWELASEYFWNFTVVSAGFMILYVVVHILLCEPSKRQGL 482
D D DK+H+LATLQTE Q +W YFWNFTV S FM LYV+VHIL C PS QGL
Sbjct: 415 DKADLPDKEHLLATLQTEDQWNWWQTITYFWNFTVASTIFMFLYVLVHILRCGPSLPQGL 474
Query: 483 EFYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVKAQGDGWVLTVAL 542
EF GL+LPDSFGELI+ GIL+IQL++V+NMV HFV+AR + G+DHG+KA GDGWVLTVAL
Sbjct: 475 EFSGLELPDSFGELITSGILIIQLQRVYNMVSHFVQARFQMGTDHGLKANGDGWVLTVAL 534
Query: 543 VEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVE 602
+EGV+LAS E GLSDPYVVFTCNG+TR+SSV+LQ DP W++ILEFDAMEEPPSVL VE
Sbjct: 535 IEGVDLASLESEGLSDPYVVFTCNGQTRSSSVKLQMPDPLWNEILEFDAMEEPPSVLHVE 594
Query: 603 VFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNGV 662
VFDFDGPFDQ SLGHAEINFLKHTSTELADMWV LEGKLAQS+QSK+HLRIFL+NNNGV
Sbjct: 595 VFDFDGPFDQDVSLGHAEINFLKHTSTELADMWVMLEGKLAQSSQSKLHLRIFLDNNNGV 654
Query: 663 ETIKEYLTKMEKEVGKKLNLRSPHRNSTFQKLFALPPEEFLIKDFTCYLKRKMPLQGRLF 722
ETIKEYL KMEKEVGKKLNLRSP RNSTFQKLFALPPEEFLIKDFTCYLKRKMPLQGRLF
Sbjct: 655 ETIKEYLEKMEKEVGKKLNLRSPQRNSTFQKLFALPPEEFLIKDFTCYLKRKMPLQGRLF 714
Query: 723 LSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGRGLDARHGA 782
LSARI+GF+ANLFG+KTKFFFLWEDIE+IQ+L PSLAT+GSP+LVIIL +GRGLDARHGA
Sbjct: 715 LSARILGFHANLFGHKTKFFFLWEDIEEIQVLPPSLATLGSPTLVIILRRGRGLDARHGA 774
Query: 783 KSQDEEGRLRFYFQSFVSFNDASRTIMALWRSRTLTAYQKEQIAEEQQVQEEMSTAADRG 842
K+QDEEGRLRF+FQSFVSF+ ASRTI ALWR+R L YQKEQI+EE + QE D
Sbjct: 775 KTQDEEGRLRFHFQSFVSFSAASRTIKALWRTRILNPYQKEQISEEHEDQESFVILEDSA 834
Query: 843 SVPNFEDAKMSKVYNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVC 902
S+ E+ KMS++++AELPI +K++M +FDGG LEH++M+++GC NY TT W+ VKP
Sbjct: 835 SILEDEE-KMSRIFSAELPIKMKSVMGIFDGGNLEHKIMQRTGCMNYETTSWEQVKPDFF 893
Query: 903 ERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDHFRVHFRYEIE 962
ERH+SY+FNRHVS+FGGEVTCTQQK P + GW V EVM+LH VPF DHF +HFRYEIE
Sbjct: 894 ERHVSYQFNRHVSVFGGEVTCTQQKFPNTNTGGWTVIEVMALHSVPFADHFHIHFRYEIE 953
Query: 963 KSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREILFATQ 1019
KS L ACKC YIGI WLKS+KFQQRI +NIT KF RLKE+ ELV++EIL +Q
Sbjct: 954 KSSLGDCACKCDAYIGIMWLKSSKFQQRINRNITAKFNLRLKEIFELVQKEILLMSQ 1010
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356518944|ref|XP_003528135.1| PREDICTED: C2 and GRAM domain-containing protein At5g50170-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1351 bits (3497), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 672/1020 (65%), Positives = 816/1020 (80%), Gaps = 14/1020 (1%)
Query: 5 RLYVYVLQGQDLLAKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVS 64
RLYV VL+ +DL KD+YV +++GK K K+RIL+N NPVWNEEF F+VH +D +V
Sbjct: 3 RLYVCVLETKDLPVKDTYVTLRLGKLKCKTRILRNTWNPVWNEEFGFKVHGAEDVLVVSV 62
Query: 65 VFQHNDD----SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDC 120
V H+++ S GS E +G VR+PV S+A ED L PTWFSLE+PK+ +F NK C
Sbjct: 63 VVNHDNNNKCRSVTNGSVVEFVGEVRIPVGSVAFEDKQTLLPTWFSLESPKSGRFFNKYC 122
Query: 121 GKILLTISLNGKGHNLSSNRLLYLHSNVSSNESKELEDPCVLSHDVSCSKAPCLDVTEGN 180
GKILLT+SL+GKG + +++ +S ++ S++LE L ++ C + G
Sbjct: 123 GKILLTVSLHGKGRSFMNHKH-SPNSTIAVENSRDLEGLHFLC------QSHCDKMGVGK 175
Query: 181 HLMKAMVSHLEKIFNKNDQGLKTEDSSELSSTPSDYEDCVEEHPPSHNFEEAIKMMQSRE 240
L+K + + L +IF K + DSSELSS+ SDYED V E+ +FEE+I +M+SR+
Sbjct: 176 QLLKDIANGLHRIFKKKEGNSNFGDSSELSSSLSDYEDSVHENTFPCSFEESIALMESRD 235
Query: 241 -NEGDMPENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWKS 299
N+ +MPENL GIL+DQ+Y VSP DLN FLFAP+SQF KD+AELQGT +VQEGPW WK+
Sbjct: 236 DNKPEMPENLPVGILVDQIYLVSPNDLNVFLFAPNSQFSKDMAELQGTTNVQEGPWTWKN 295
Query: 300 GEMTCLTRAVSYMKAATKLVKAVKATEQQTYLKANGQEFAILVTVSTPDVPYGNTFNVQL 359
G+ +CLTR V+YMKAATKL+KAV A E+QTY++ + +EFAILV+VSTP+VPYGN+F ++L
Sbjct: 296 GDTSCLTRVVTYMKAATKLIKAVNAIEEQTYIRVSRKEFAILVSVSTPEVPYGNSFRIEL 355
Query: 360 LYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKESFEQFANLLAQNL 419
LYKI+PG E+SSGE+SSHL++SWGI F QSTMM+GMIEGGARQGLKESF QF++ LA+N
Sbjct: 356 LYKIMPG-EVSSGEESSHLVVSWGIVFLQSTMMKGMIEGGARQGLKESFSQFSDQLARNF 414
Query: 420 KILDSKDASDKDHMLATLQTEQQSDWELASEYFWNFTVVSAGFMILYVVVHILLCEPSKR 479
K+LD D DK+H+LATLQTE Q W YFWNFTV S FM LYV+VHIL C P+
Sbjct: 415 KVLDKADLPDKEHLLATLQTEDQWYWWQTITYFWNFTVASTIFMFLYVLVHILRCGPNLL 474
Query: 480 QGLEFYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVKAQGDGWVLT 539
QGLEF GL+LPDSFGELI+ GIL+IQL++V+NMV HFV+AR + G+DHG+KA GDGWVLT
Sbjct: 475 QGLEFSGLELPDSFGELITSGILIIQLQRVYNMVSHFVQARFQMGTDHGLKAHGDGWVLT 534
Query: 540 VALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVL 599
VAL+EGV+LAS E GLSDPYVVFTCNG+TR+SSV+LQT DPQW++ILEFDAMEEPPSVL
Sbjct: 535 VALIEGVDLASLESEGLSDPYVVFTCNGQTRSSSVKLQTSDPQWNEILEFDAMEEPPSVL 594
Query: 600 DVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENN 659
VEVFDFDGPFDQ SLGHAEINFL+HTSTELADMWV LEGKLAQS+QSK+HLRIFL+NN
Sbjct: 595 HVEVFDFDGPFDQDVSLGHAEINFLRHTSTELADMWVMLEGKLAQSSQSKLHLRIFLDNN 654
Query: 660 NGVETIKEYLTKMEKEVGKKLNLRSPHRNSTFQKLFALPPEEFLIKDFTCYLKRKMPLQG 719
NGVETIKEYL KMEKEVGKKLNLRSP RNSTFQKLFALPPEEFLIKDFTCYLKRKMPLQG
Sbjct: 655 NGVETIKEYLEKMEKEVGKKLNLRSPQRNSTFQKLFALPPEEFLIKDFTCYLKRKMPLQG 714
Query: 720 RLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGRGLDAR 779
RLFLSARI+GF+ANLFG+KTKFFFLWEDIE+IQ+L PSLAT+GSP+LVI+L +GRGLDAR
Sbjct: 715 RLFLSARILGFHANLFGHKTKFFFLWEDIEEIQVLPPSLATLGSPTLVIVLRRGRGLDAR 774
Query: 780 HGAKSQDEEGRLRFYFQSFVSFNDASRTIMALWRSRTLTAYQKEQIAEEQQVQEEMSTAA 839
HGAK+QDEEGRLRF+FQSFVSF+ ASR I ALWR+R L YQKEQI+EE + QE
Sbjct: 775 HGAKTQDEEGRLRFHFQSFVSFSAASRAIKALWRTRILNPYQKEQISEEHEDQERFVIPE 834
Query: 840 DRGSVPNFEDAKMSKVYNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKP 899
D S+ E+ KMS++++AELPI +K++M +FDGG LEH++M+++GC NY TT W+ VK
Sbjct: 835 DSASILEDEE-KMSRIFSAELPIKMKSVMGIFDGGNLEHKIMQRTGCTNYETTSWEQVKH 893
Query: 900 GVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDHFRVHFRY 959
V ER +SY+FNRHVS FGGEVTCTQQK P A+ GW V EVM LH VPF DHF +HFRY
Sbjct: 894 DVFERRVSYQFNRHVSAFGGEVTCTQQKFPNANTGGWTVIEVMDLHGVPFADHFHIHFRY 953
Query: 960 EIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREILFATQ 1019
EIEKS L ACKC YIGI WLKS+KFQQRI +NIT KF RLKE+ ELV++EIL +Q
Sbjct: 954 EIEKSSLGDCACKCDAYIGIMWLKSSKFQQRINRNITAKFNLRLKEIFELVQKEILLMSQ 1013
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357461815|ref|XP_003601189.1| GRAM domain-containing protein 1B [Medicago truncatula] gi|355490237|gb|AES71440.1| GRAM domain-containing protein 1B [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1310 bits (3390), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 642/1018 (63%), Positives = 808/1018 (79%), Gaps = 12/1018 (1%)
Query: 5 RLYVYVLQGQDLLAKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVS 64
+LYV VL+ +DL K+S VK+++GK K K+RILKN NP+WNEEFVF+V +I ++ LVV+
Sbjct: 4 KLYVCVLEAKDLPVKNSRVKLKLGKFKYKTRILKNTFNPIWNEEFVFKVKDIAEDVLVVN 63
Query: 65 VFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDN-HMLPPTWFSLE-TPKTRKFTNKDCGK 122
V H+D S + + +G VR+PV S+ EDN +LPPTWF L+ + K KF NK CGK
Sbjct: 64 VVNHSDQSKVV----DFVGEVRIPVGSVGFEDNKQILPPTWFELQCSNKNGKFFNKFCGK 119
Query: 123 ILLTISLNGKGHNLSSNRLLYLHSNVSSNESKELEDPCVLSHDVSCSKAPCLDVTEGNHL 182
ILLTISL+ K H N +S S +S E E + SH S + EG HL
Sbjct: 120 ILLTISLHYKDHVSFMNHKHSPNSTASIKDSTESERLHISSHQ---SFHKNRKMGEGKHL 176
Query: 183 MKAMVSHLEKIFNKNDQGLKTEDSSELSSTPSDYEDCVEEHPPSHNFEEAIKMMQSRENE 242
+KA+ LE+I +K ++ K D SE S++ SDYED V+E+ P +FEE I +MQSR+N+
Sbjct: 177 LKAIADRLERILHKKERNSKPVDCSETSNSLSDYEDSVQENSPPCSFEEGIALMQSRDNQ 236
Query: 243 GDMPENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWKSGEM 302
+ PENLQGGIL+D++Y+VSP +LN LF PDSQFRKDLAE QGT ++QEG W WK +M
Sbjct: 237 PESPENLQGGILVDKIYEVSPYNLNVVLFVPDSQFRKDLAEQQGTTNLQEGAWSWKDEDM 296
Query: 303 TCLTRAVSYMKAATKLVKAVKATEQQTYLKANGQEFAILVTVSTPDVPYGNTFNVQLLYK 362
+CLTR V+Y KAA+KLVKA+ TE+QTY++A EF +LV+V TP+VPYGN+F V++LYK
Sbjct: 297 SCLTRVVNYTKAASKLVKALNTTEEQTYIRATKDEFDVLVSVCTPEVPYGNSFRVEILYK 356
Query: 363 IIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKESFEQFANLLAQNLKIL 422
I+PG ++S ++SSHL+I+WG+ F QSTMM+G+IE GA+QGLKESF+QFANLLAQ K+L
Sbjct: 357 IMPGEDVSCVKESSHLVITWGMVFLQSTMMKGVIENGAKQGLKESFDQFANLLAQRFKVL 416
Query: 423 DSKDASDKDHMLATLQTEQQSDWELASEYFWNFTVVSAGFMILYVVVHILLCEPSKRQGL 482
D +D +K+H+LATLQTE Q +W A YFWNFTVVS FM LYV++HIL C PS+ +GL
Sbjct: 417 DKEDLINKEHLLATLQTESQWNWWQAITYFWNFTVVSTFFMCLYVLLHILRCGPSQPRGL 476
Query: 483 EFYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVKAQGDGWVLTVAL 542
EF G++LPDS GEL++ GILVIQLE+V++MV HFV+AR + G+DHG+KA GDGWV+TVAL
Sbjct: 477 EFRGIELPDSLGELVTSGILVIQLERVYHMVSHFVQARFQMGTDHGMKAHGDGWVVTVAL 536
Query: 543 VEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVE 602
+EGV+L S E TGLSDPYVVFTCNG+TR+SSV+L+T DPQW++ILEFDAMEEPPSVL VE
Sbjct: 537 IEGVDLVSLESTGLSDPYVVFTCNGQTRSSSVKLETSDPQWNEILEFDAMEEPPSVLYVE 596
Query: 603 VFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNGV 662
VFDFDGPFDQ SLGHAEINFLKHTSTELADMWV LEGKLAQSAQSK+HLRIFL+NN GV
Sbjct: 597 VFDFDGPFDQDVSLGHAEINFLKHTSTELADMWVVLEGKLAQSAQSKLHLRIFLDNNKGV 656
Query: 663 ETIKEYLTKMEKEVGKKLNLRSPHRNSTFQKLFALPPEEFLIKDFTCYLKRKMPLQGRLF 722
IK+YL K EKEVGKK NL SP RNSTFQKLF LPPEEFLI DFTC LKRK+ LQGRLF
Sbjct: 657 AIIKDYLEKKEKEVGKKFNLPSPQRNSTFQKLFGLPPEEFLINDFTCSLKRKLHLQGRLF 716
Query: 723 LSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGRGLDARHGA 782
LSAR++GFYANLFG+KTKFFFLWEDI++IQ+L PSLA++GSP+L +IL +GRG+DARHGA
Sbjct: 717 LSARVLGFYANLFGHKTKFFFLWEDIDNIQVLPPSLASLGSPTLAVILRRGRGIDARHGA 776
Query: 783 KSQDEEGRLRFYFQSFVSFNDASRTIMALWRSRTLTAYQKEQIAEEQQVQEEMSTAADRG 842
K+QDEEGRLRF+FQSFVSF ASRTIMALWR+R L YQKEQI EE + QE + D G
Sbjct: 777 KTQDEEGRLRFHFQSFVSFGSASRTIMALWRARILNPYQKEQITEEHEDQEVLVMPEDSG 836
Query: 843 SVPNFEDAKMSKVYNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVC 902
S+ ++AKMS++Y+AELPI ++++M +FDGG +EH++M+++GC +Y TTPW+ VKP V
Sbjct: 837 SILE-DEAKMSRIYSAELPIKIRSMMGIFDGGNIEHKIMKRTGCMDYDTTPWEPVKPDVL 895
Query: 903 ERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDHFRVHFRYEIE 962
ERH++Y+FNRHVS+F +VT TQQK P + EGWIVNEVM L+ VPF DHFR+HFRYEIE
Sbjct: 896 ERHVTYQFNRHVSVF--DVTSTQQKYPNTNTEGWIVNEVMILNGVPFSDHFRIHFRYEIE 953
Query: 963 KSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREILFATQQ 1020
KS L ACKC +YIGI WL+S+KFQ+RI +NIT KF RL+E+ EL+++EIL + +
Sbjct: 954 KSALGECACKCDVYIGIMWLRSSKFQKRINRNITSKFKIRLEEIFELLQKEILLMSHK 1011
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240629|ref|NP_199828.1| C2 and GRAM domain-containing protein [Arabidopsis thaliana] gi|75309065|sp|Q9FGS8.1|C2GR2_ARATH RecName: Full=C2 and GRAM domain-containing protein At5g50170 gi|9759019|dbj|BAB09388.1| unnamed protein product [Arabidopsis thaliana] gi|15810203|gb|AAL07002.1| AT5g50170/K6A12_3 [Arabidopsis thaliana] gi|32815845|gb|AAP88330.1| At5g50170/K6A12_3 [Arabidopsis thaliana] gi|332008523|gb|AED95906.1| C2 and GRAM domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1212 bits (3135), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/1020 (58%), Positives = 780/1020 (76%), Gaps = 15/1020 (1%)
Query: 5 RLYVYVLQGQDLLAKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVS 64
RLYVY+LQ +DL AK+++ K+ +G+HKSK+R+ ++ S+P+WNEEFVFR+ ++D+ + VV
Sbjct: 2 RLYVYILQAKDLPAKETFAKLHVGRHKSKTRVARDTSSPIWNEEFVFRISDVDEGDDVVV 61
Query: 65 VFQHND--DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGK 122
H++ D S+G L+G+VR+P++S+AAE+N L PTWF +E P KF N +CGK
Sbjct: 62 SILHHEQQDHQSIVSTG-LIGKVRIPLTSVAAEENQTLLPTWFVIEKPSDGKFVNIECGK 120
Query: 123 ILLTISLNGKGHNLSSNRLLYLHSNVSSNES-KELE-DPCVLSHDVSCSKAPCLDVTEGN 180
ILL++SL GK + S ++L ++ + E KELE P L +S +G
Sbjct: 121 ILLSLSLQGKWESTSGEKVLNDKQDIINLEGVKELEGSPKDL---ISSRDGKRRKHHDGK 177
Query: 181 HLMKAMVSHLEKIFNKNDQGLKT--EDSSELSSTPSDYEDCVEEHPPSHN---FEEAIKM 235
H+MK +V+H++K+F+K ++ K ++SS S S+YED ++ S FEE + +
Sbjct: 178 HIMKNIVNHIDKLFHKKEEISKRLHDESSVGQSVNSNYEDATDQCSSSATCTGFEEGLDL 237
Query: 236 MQSRENEGD-MPENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGP 294
MQS ++E + MPENL GG+L+DQ Y VSPC+LN FLF P SQFRK+LAELQG DVQEGP
Sbjct: 238 MQSSDSEREEMPENLTGGVLVDQKYLVSPCELNKFLFTPSSQFRKELAELQGLSDVQEGP 297
Query: 295 WEWKSGEMTCLTRAVSYMKAATKLVKAVKATEQQTYLKANGQEFAILVTVSTPDVPYGNT 354
W + LTR V+YM+AATK+VKAVKATE Q Y KA+G++FA+ V+VSTPDVPYGNT
Sbjct: 298 WTMMQEDTPRLTRVVTYMRAATKMVKAVKATENQVYRKASGKQFAVFVSVSTPDVPYGNT 357
Query: 355 FNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKESFEQFANL 414
F ++LLYKI+P E ++G ++S LIISWGI F QST+M+GMIEGGARQGLKESFEQF+NL
Sbjct: 358 FKIELLYKILPETEPTAGGEASRLIISWGIQFSQSTIMKGMIEGGARQGLKESFEQFSNL 417
Query: 415 LAQNLKILDSKDASDKDHMLATLQTEQQSDWELASEYFWNFTVVSAGFMILYVVVHILLC 474
LA+ K LD DK+ ++AT+Q+E ++D + A YFW+ +V+ A + +YVVVH+L C
Sbjct: 418 LAKTYKTLDPAVVLDKEQVIATVQSEPKTDLKSAFLYFWSSSVICAVLLSVYVVVHMLHC 477
Query: 475 EPSKRQGLEFYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVKAQGD 534
EPSK QG EFYGLDLPDSFGEL S GILV+ LE+V+ M HFV+ARL +G D GVKA G
Sbjct: 478 EPSKIQGFEFYGLDLPDSFGELFSSGILVLLLERVYIMTVHFVQARLHRGRDQGVKANGK 537
Query: 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEE 594
GW+LT+AL++G NLAS E T L DPYVVFTCNGKTRTSSV+LQ DPQW++++EFDAMEE
Sbjct: 538 GWILTIALIKGTNLASVEATELFDPYVVFTCNGKTRTSSVKLQAQDPQWNEVIEFDAMEE 597
Query: 595 PPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRI 654
PPSVLDVEVFDFDGPFDQ SLGHAEINFLKHT+ ELAD+ V+L G AQ++QSK+ LRI
Sbjct: 598 PPSVLDVEVFDFDGPFDQGASLGHAEINFLKHTADELADLSVALVGNHAQASQSKLQLRI 657
Query: 655 FLENNNGVETIKEYLTKMEKEVGKKLNLRSPHRNSTFQKLFALPPEEFLIKDFTCYLKRK 714
FLEN NGVET+K+YL+K+EKEVGKKLN+RSP +NS FQKLF LP EEFL+K++TCYLKRK
Sbjct: 658 FLENKNGVETMKDYLSKVEKEVGKKLNIRSPQKNSAFQKLFGLPHEEFLLKEYTCYLKRK 717
Query: 715 MPLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGR 774
+P+QG+LFLSARIV FY+N+FG+KTKF+FLWEDI+DIQ+L P+ A++GSP L+IIL K R
Sbjct: 718 LPVQGKLFLSARIVAFYSNVFGHKTKFYFLWEDIDDIQVLPPTFASLGSPLLLIILKKNR 777
Query: 775 GLDARHGAKSQDEEGRLRFYFQSFVSFNDASRTIMALWRSRTLTAYQKEQIAEEQQVQEE 834
GLDA+HGAKSQD+EGRL FYFQSFVSF+ SRTIMALW++RTL+ + QI EE Q +
Sbjct: 778 GLDAKHGAKSQDDEGRLSFYFQSFVSFDATSRTIMALWKTRTLSVDHRAQIVEEDQDVAD 837
Query: 835 MSTAADRGSVPNFEDA-KMSKVYNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTP 893
+ +V + DA MSKVY +LP V+ +M++F GG+LE ++MEKSGC +Y +T
Sbjct: 838 PFLLPEAVTVVSDADALMMSKVYTCDLPCDVELVMKIFGGGELERKIMEKSGCLSYASTT 897
Query: 894 WDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDHF 953
W+ KPGV ER LSY++N +VS+FGG VTC QQKSP + EGWI+NE+++LHDVPF DHF
Sbjct: 898 WESKKPGVYERRLSYKYNHYVSVFGGGVTCAQQKSPAPNDEGWILNEIVALHDVPFGDHF 957
Query: 954 RVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVERE 1013
RVH RYE++K+ + KC +Y+ I WLK+ KF+QRI+++I EKF +R K + +L ++E
Sbjct: 958 RVHIRYEVKKAGVDCKTSKCEVYLKIRWLKTIKFEQRISKSIMEKFRNRFKVIFDLFQKE 1017
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297792313|ref|XP_002864041.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297309876|gb|EFH40300.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1210 bits (3130), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/1021 (58%), Positives = 774/1021 (75%), Gaps = 16/1021 (1%)
Query: 5 RLYVYVLQGQDLLAKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVV- 63
RLYVY+LQ +DL AK+++ K +GKHKSK+R+ ++ S+P+WNEEFVFR+ ++D+ + VV
Sbjct: 2 RLYVYILQAKDLPAKETFAKFHVGKHKSKTRVARDTSSPIWNEEFVFRISDVDEGDDVVV 61
Query: 64 SVFQH---NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDC 120
S+ H D + ++G L+G+VR+P+ SIAAE+N L PTWF +E KF N +C
Sbjct: 62 SILHHEQQQDHQSIVSTTG-LIGKVRIPLCSIAAEENQTLLPTWFVIEKLSDGKFVNIEC 120
Query: 121 GKILLTISLNGKGHNLSSNRLLYLHSNVSSNESKELE-DPCVLSHDVSCSKAPCLDVTEG 179
GKILL++SL GK + S ++L +++ KEL+ P L +S +G
Sbjct: 121 GKILLSLSLQGKWESTSGEKVLNDKQDINLEGVKELQGSPKDL---ISSKDGRRRKHHDG 177
Query: 180 NHLMKAMVSHLEKIFNKNDQGLKT--EDSSELSSTPSDYEDCVEEHPPSHN---FEEAIK 234
H+MK V+ ++K+F+K ++ K +DSS + S+YED ++ S FEE +
Sbjct: 178 KHIMKNFVNQIDKLFHKKEEISKRLHDDSSVDQTVNSNYEDATDKCSSSATCTGFEEGLD 237
Query: 235 MMQSRENEGD-MPENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEG 293
+MQS ++E + MPENLQGGILLDQ Y VSPCDLN +LF P SQFRK+LAELQG DVQEG
Sbjct: 238 LMQSCDSEREEMPENLQGGILLDQKYLVSPCDLNKYLFTPSSQFRKELAELQGLSDVQEG 297
Query: 294 PWEWKSGEMTCLTRAVSYMKAATKLVKAVKATEQQTYLKANGQEFAILVTVSTPDVPYGN 353
PW + LTR V+YM+AA+K+VKAVKATE Q Y KA+G++FA+ V+VSTPDVPYGN
Sbjct: 298 PWTVMQEDTPRLTRVVTYMRAASKMVKAVKATENQVYRKASGKQFAVFVSVSTPDVPYGN 357
Query: 354 TFNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKESFEQFAN 413
TF ++LLYKI+P E ++ +SS LIISWGI F+QST+M+GMIEGGARQGL+ESFEQFAN
Sbjct: 358 TFKIELLYKILPETEPTADGESSRLIISWGIQFNQSTIMKGMIEGGARQGLRESFEQFAN 417
Query: 414 LLAQNLKILDSKDASDKDHMLATLQTEQQSDWELASEYFWNFTVVSAGFMILYVVVHILL 473
LL + K LD DKD ++AT+Q+EQ++D + A YFW+ +V A + +YVV H+L
Sbjct: 418 LLTKTYKTLDPAAVLDKDQVIATVQSEQKTDLKSAFLYFWSSSVFCAVLLSVYVVAHMLH 477
Query: 474 CEPSKRQGLEFYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVKAQG 533
CEPSK QG EFYGLDLPDSFGEL+S GILV+ LE+V+ M HF++ARL +G D GVKA G
Sbjct: 478 CEPSKIQGFEFYGLDLPDSFGELLSSGILVLLLERVYMMTVHFIQARLHRGRDQGVKANG 537
Query: 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAME 593
GW+LT+AL++G NLAS E T L DPYVVFTCNGKTRTSSV+LQ DPQW++++EFDAME
Sbjct: 538 KGWILTIALIKGTNLASVEATELFDPYVVFTCNGKTRTSSVKLQAQDPQWNEVIEFDAME 597
Query: 594 EPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLR 653
EPPSVLDVEVFDFDGPFDQ SLGHAEINFLKHT+ ELADM V L G AQ++QSK+ LR
Sbjct: 598 EPPSVLDVEVFDFDGPFDQGASLGHAEINFLKHTADELADMSVPLVGHHAQASQSKLQLR 657
Query: 654 IFLENNNGVETIKEYLTKMEKEVGKKLNLRSPHRNSTFQKLFALPPEEFLIKDFTCYLKR 713
IFLEN NGVET+K+YL+K+EKEVGKKLN+RSP +NS FQKLF LP EEFL+K++TCYLKR
Sbjct: 658 IFLENKNGVETMKDYLSKVEKEVGKKLNIRSPQKNSAFQKLFGLPHEEFLLKEYTCYLKR 717
Query: 714 KMPLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKG 773
K+P+QG+LFLSARIV FY+N+FG+KTKF+FLWEDI+DIQ+L P+ A++GSP L+IIL K
Sbjct: 718 KLPVQGKLFLSARIVAFYSNVFGHKTKFYFLWEDIDDIQVLPPTFASLGSPLLLIILKKN 777
Query: 774 RGLDARHGAKSQDEEGRLRFYFQSFVSFNDASRTIMALWRSRTLTAYQKEQIAEE-QQVQ 832
RGLDA+HGAKSQD+EGRL FYFQSFVSF+ SRTIMALW++RTL+ + QIAEE Q V
Sbjct: 778 RGLDAKHGAKSQDDEGRLWFYFQSFVSFDATSRTIMALWKTRTLSVDHRAQIAEEDQDVA 837
Query: 833 EEMSTAADRGSVPNFEDAKMSKVYNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTT 892
+ V + + MSKVY +LP V+ +M++F GG+LE ++MEKSGC +Y +T
Sbjct: 838 DPFLLPEAVAVVSDTDALMMSKVYTCDLPGDVELVMKIFGGGELERKIMEKSGCLSYAST 897
Query: 893 PWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDH 952
W+ KPG+ ER LSY++N +VS+FGG VTCTQQKSP + EGWI+NE+++LHDVPF DH
Sbjct: 898 TWESKKPGIYERRLSYKYNHYVSVFGGGVTCTQQKSPAPNDEGWIINEIVALHDVPFGDH 957
Query: 953 FRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVER 1012
FRVH RYE++K+ + KC +Y+ I WLK+ KF+QRI+++I EKF +R K + +L ++
Sbjct: 958 FRVHIRYEVKKAGVDCKTSKCEVYLKIRWLKTIKFEQRISKSIMEKFRNRFKVIFDLFQK 1017
Query: 1013 E 1013
E
Sbjct: 1018 E 1018
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495634|ref|XP_002264782.2| PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Vitis vinifera] gi|297736702|emb|CBI25738.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1056 bits (2730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 546/1048 (52%), Positives = 734/1048 (70%), Gaps = 59/1048 (5%)
Query: 5 RLYVYVLQGQDLLA------KDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDD 58
+L V V++ ++L A D YV++Q+G+++ +++++K + NP W EEF F V ++
Sbjct: 2 KLVVRVIEARNLPAMDLNGLSDPYVRLQLGRNRFRTKVVKKSLNPSWGEEFSFWVEDLS- 60
Query: 59 EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNK 118
E+LVVSV D+ F + +G++RVPVS + + L TW+SL PK++K ++
Sbjct: 61 EDLVVSVL---DEDKYFND--DFVGQLRVPVSRVFDAEVKSLGTTWYSLH-PKSKKSRSR 114
Query: 119 DCGKILLTISLNGKGHNLSSNRLLYLHSN------VSSNESKELEDPCVLS--------- 163
DCG+ILL I + ++ + LHS+ + + +E P
Sbjct: 115 DCGEILLNIFFS------QNSGFMPLHSDDDHVPPLRKHPDVTIESPSRSFNGSSRSSSP 168
Query: 164 -------HDVSCSKAPCLDVTEGNHLMKAMVSHLEKIFNKNDQ-----GLKTEDSSELSS 211
D+ SK L+ K + + +IF KN + DSSELS
Sbjct: 169 MPSGMRMEDIIGSKEEKLNA------QKTIAGRIAQIFVKNGDLASCTSAGSIDSSELSE 222
Query: 212 T--PSDYED-CVEEHPPSHNFEEAIKMMQSRENEGDMPENLQGGILLDQLYQVSPCDLNT 268
T P YE+ E+ S +FEE++K M+S + + NL GG+LLDQLY V+ +LN+
Sbjct: 223 TSIPEVYENKLEEQSSSSCSFEESMKRMESTDQGNECLSNLPGGVLLDQLYVVASSELNS 282
Query: 269 FLFAPDSQFRKDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKAATKLVKAVKATEQQ 328
FLFAPDS F + LA+LQGT ++Q+GPW +++G L R V+Y+KAA+KL+KAVKATE Q
Sbjct: 283 FLFAPDSNFPRALADLQGTTELQQGPWVFENGG-DSLKRVVTYIKAASKLIKAVKATEDQ 341
Query: 329 TYLKANGQEFAILVTVSTPDVPYGNTFNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQ 388
TYLKA+G+ FA+L +VSTPDV YG+TF ++LY I PGPE+ SGE SS L+ISW ++F Q
Sbjct: 342 TYLKADGKVFAVLASVSTPDVMYGSTFKAEVLYCITPGPEMPSGEQSSRLVISWRMNFSQ 401
Query: 389 STMMRGMIEGGARQGLKESFEQFANLLAQNLKILDSKDA-SDKDHMLATLQTEQQSDWEL 447
+TMM+ MIEGGARQGLK+S+ Q+ NLLAQN+K +D DA S+K+ +LA+LQ E+QSDW+L
Sbjct: 402 NTMMKSMIEGGARQGLKDSYAQYGNLLAQNVKPVDPNDAGSNKEQVLASLQAERQSDWKL 461
Query: 448 ASEYFWNFTVVSAGFMILYVVVHILLCEPSKRQGLEFYGLDLPDSFGELISCGILVIQLE 507
A +YF N TVVS F +LYV HI + PS QGLEF GLDLPDS GE+I C +LVIQ E
Sbjct: 462 AVQYFVNITVVSTIFAVLYVSTHIWIATPSPIQGLEFVGLDLPDSIGEVIVCILLVIQGE 521
Query: 508 QVFNMVGHFVRARLRKGSDHGVKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG 567
+V M+ F++AR +KGSDHGVKAQGDGW+LTVAL+EG NLA+ + +G SDPYVVFT NG
Sbjct: 522 RVLKMIARFMQARAQKGSDHGVKAQGDGWLLTVALIEGSNLAAVDSSGFSDPYVVFTTNG 581
Query: 568 KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHT 627
KTRTSS++ Q DP W++I EFDAM+EPPS+LDVEV DFDGPFD+ATSLGHAEINF+K
Sbjct: 582 KTRTSSIKFQKSDPLWNEIFEFDAMDEPPSMLDVEVLDFDGPFDEATSLGHAEINFVKTN 641
Query: 628 STELADMWVSLEGKLAQSAQSKVHLRIFLENNNGVETIKEYLTKMEKEVGKKLNLRSPHR 687
++LAD+W+ L+GKLAQ+ QSK+HLRIFL N G +KEYLTKMEKEVGKK+NLRSP
Sbjct: 642 LSDLADVWIPLQGKLAQACQSKLHLRIFLNNTRGNNVVKEYLTKMEKEVGKKINLRSPQT 701
Query: 688 NSTFQKLFALPPEEFLIKDFTCYLKRKMPLQGRLFLSARIVGFYANLFGNKTKFFFLWED 747
NS FQKLF LPPEEFLI DFTC+LKRKMP+QGRLF+SARI+GF+ANLFG+KTKFFFLWED
Sbjct: 702 NSAFQKLFGLPPEEFLINDFTCHLKRKMPMQGRLFMSARIIGFHANLFGHKTKFFFLWED 761
Query: 748 IEDIQILSPSLATVGSPSLVIILWKGRGLDARHGAKSQDEEGRLRFYFQSFVSFNDASRT 807
I+DIQ + +L+++GSP +V+ L KGRG+DARHGAKSQD +GRL+F+F SFVSFN A RT
Sbjct: 762 IDDIQFETATLSSMGSPIIVMTLRKGRGMDARHGAKSQDAQGRLKFHFHSFVSFNVAQRT 821
Query: 808 IMALWRSRTLTAYQKEQIAEEQQVQEEMSTAADRGSVPNFEDAKMSKVYNAELPISVKAL 867
IMALW++R+L+ QK +I EE + + + + GS ED M +VY++ L +
Sbjct: 822 IMALWKARSLSPEQKVRIVEESESKSLQT--EETGSFLGLEDVYMPEVYSSVLSLPANFC 879
Query: 868 MEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQK 927
+E+F GG+LE++VM+K+GC NY TPW+L K G+ R + Y+F++ VS + GE TQQ+
Sbjct: 880 VELFGGGELEYRVMQKAGCLNYSLTPWELDKDGIYVRQICYKFDKCVSRYRGEAVSTQQR 939
Query: 928 SPLASGEGWIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKF 987
S L GW++ EV++LH VP DHF +HFRY+IE +P AC +Y GI+WLKST+
Sbjct: 940 SLLPDRNGWVIEEVLTLHGVPLGDHFNLHFRYQIEHAPSKGKACHICVYFGIAWLKSTRH 999
Query: 988 QQRITQNITEKFTHRLKEMIELVEREIL 1015
Q+RI++NI RLK M+ VE+E L
Sbjct: 1000 QKRISKNIHSNLQDRLKLMVGEVEKEFL 1027
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1024 | ||||||
| TAIR|locus:2157707 | 1027 | AT5G50170 "AT5G50170" [Arabido | 0.981 | 0.978 | 0.566 | 1.00000000001e-313 | |
| UNIPROTKB|Q5Z6I4 | 1037 | OSJNBa0055N24.36 "Putative Osn | 0.977 | 0.965 | 0.454 | 3.7e-238 | |
| UNIPROTKB|Q66VB0 | 1086 | Os06g0607900 "Os06g0607900 pro | 0.773 | 0.729 | 0.480 | 1.2e-236 | |
| UNIPROTKB|Q69V64 | 354 | P0556B08.10 "C2 domain-contain | 0.336 | 0.974 | 0.515 | 2.5e-97 | |
| TAIR|locus:2097578 | 594 | AT3G59660 "AT3G59660" [Arabido | 0.445 | 0.767 | 0.227 | 2.1e-19 | |
| UNIPROTKB|Q6DN14 | 999 | MCTP1 "Multiple C2 and transme | 0.101 | 0.104 | 0.283 | 3.7e-12 | |
| UNIPROTKB|E1C578 | 693 | MCTP1 "Uncharacterized protein | 0.113 | 0.167 | 0.296 | 6e-12 | |
| RGD|1305199 | 946 | Mctp1 "multiple C2 domains, tr | 0.121 | 0.131 | 0.275 | 1.4e-11 | |
| ZFIN|ZDB-GENE-050506-136 | 665 | mctp2b "multiple C2 domains, t | 0.103 | 0.159 | 0.32 | 4.1e-09 | |
| TAIR|locus:2009492 | 1029 | AT1G22610 "AT1G22610" [Arabido | 0.142 | 0.141 | 0.287 | 6.9e-09 |
| TAIR|locus:2157707 AT5G50170 "AT5G50170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3009 (1064.3 bits), Expect = 1.0e-313, P = 1.0e-313
Identities = 578/1020 (56%), Positives = 762/1020 (74%)
Query: 5 RLYVYVLQGQDLLAKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDD-EELVV 63
RLYVY+LQ +DL AK+++ K+ +G+HKSK+R+ ++ S+P+WNEEFVFR+ ++D+ +++VV
Sbjct: 2 RLYVYILQAKDLPAKETFAKLHVGRHKSKTRVARDTSSPIWNEEFVFRISDVDEGDDVVV 61
Query: 64 SVFQHND-DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGK 122
S+ H D S+G L+G+VR+P++S+AAE+N L PTWF +E P KF N +CGK
Sbjct: 62 SILHHEQQDHQSIVSTG-LIGKVRIPLTSVAAEENQTLLPTWFVIEKPSDGKFVNIECGK 120
Query: 123 ILLTISLNGKGHNLSSNRLLYLHSNVSSNES-KELE-DPCVLSHDVSCSKAPCLDVTEGN 180
ILL++SL GK + S ++L ++ + E KELE P L +S +G
Sbjct: 121 ILLSLSLQGKWESTSGEKVLNDKQDIINLEGVKELEGSPKDL---ISSRDGKRRKHHDGK 177
Query: 181 HLMKAMVSHLEKIFNKNDQGLKT--EDSSELSSTPSDYEDCVEEHPPSHN---FEEAIKM 235
H+MK +V+H++K+F+K ++ K ++SS S S+YED ++ S FEE + +
Sbjct: 178 HIMKNIVNHIDKLFHKKEEISKRLHDESSVGQSVNSNYEDATDQCSSSATCTGFEEGLDL 237
Query: 236 MQSRENEGD-MPENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGP 294
MQS ++E + MPENL GG+L+DQ Y VSPC+LN FLF P SQFRK+LAELQG DVQEGP
Sbjct: 238 MQSSDSEREEMPENLTGGVLVDQKYLVSPCELNKFLFTPSSQFRKELAELQGLSDVQEGP 297
Query: 295 WEWKSGEMTCLTRAVSYMXXXXXXXXXXXXXEQQTYLKANGQEFAILVTVSTPDVPYGNT 354
W + LTR V+YM E Q Y KA+G++FA+ V+VSTPDVPYGNT
Sbjct: 298 WTMMQEDTPRLTRVVTYMRAATKMVKAVKATENQVYRKASGKQFAVFVSVSTPDVPYGNT 357
Query: 355 FNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKESFEQFANL 414
F ++LLYKI+P E ++G ++S LIISWGI F QST+M+GMIEGGARQGLKESFEQF+NL
Sbjct: 358 FKIELLYKILPETEPTAGGEASRLIISWGIQFSQSTIMKGMIEGGARQGLKESFEQFSNL 417
Query: 415 LAQNLKILDSKDASDKDHMLATLQTEQQSDWELASEYFWNFTVVSAGFMILYVVVHILLC 474
LA+ K LD DK+ ++AT+Q+E ++D + A YFW+ +V+ A + +YVVVH+L C
Sbjct: 418 LAKTYKTLDPAVVLDKEQVIATVQSEPKTDLKSAFLYFWSSSVICAVLLSVYVVVHMLHC 477
Query: 475 EPSKRQGLEFYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVKAQGD 534
EPSK QG EFYGLDLPDSFGEL S GILV+ LE+V+ M HFV+ARL +G D GVKA G
Sbjct: 478 EPSKIQGFEFYGLDLPDSFGELFSSGILVLLLERVYIMTVHFVQARLHRGRDQGVKANGK 537
Query: 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEE 594
GW+LT+AL++G NLAS E T L DPYVVFTCNGKTRTSSV+LQ DPQW++++EFDAMEE
Sbjct: 538 GWILTIALIKGTNLASVEATELFDPYVVFTCNGKTRTSSVKLQAQDPQWNEVIEFDAMEE 597
Query: 595 PPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRI 654
PPSVLDVEVFDFDGPFDQ SLGHAEINFLKHT+ ELAD+ V+L G AQ++QSK+ LRI
Sbjct: 598 PPSVLDVEVFDFDGPFDQGASLGHAEINFLKHTADELADLSVALVGNHAQASQSKLQLRI 657
Query: 655 FLENNNGVETIKEYLTKMEKEVGKKLNLRSPHRNSTFQKLFALPPEEFLIKDFTCYLKRK 714
FLEN NGVET+K+YL+K+EKEVGKKLN+RSP +NS FQKLF LP EEFL+K++TCYLKRK
Sbjct: 658 FLENKNGVETMKDYLSKVEKEVGKKLNIRSPQKNSAFQKLFGLPHEEFLLKEYTCYLKRK 717
Query: 715 MPLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGR 774
+P+QG+LFLSARIV FY+N+FG+KTKF+FLWEDI+DIQ+L P+ A++GSP L+IIL K R
Sbjct: 718 LPVQGKLFLSARIVAFYSNVFGHKTKFYFLWEDIDDIQVLPPTFASLGSPLLLIILKKNR 777
Query: 775 GLDARHGAKSQDEEGRLRFYFQSFVSFNDASRTIMALWRSRTLTAYXXXXXXXXXXXXXX 834
GLDA+HGAKSQD+EGRL FYFQSFVSF+ SRTIMALW++RTL+
Sbjct: 778 GLDAKHGAKSQDDEGRLSFYFQSFVSFDATSRTIMALWKTRTLSVDHRAQIVEEDQDVAD 837
Query: 835 MSTAADRGSVPNFEDA-KMSKVYNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTP 893
+ +V + DA MSKVY +LP V+ +M++F GG+LE ++MEKSGC +Y +T
Sbjct: 838 PFLLPEAVTVVSDADALMMSKVYTCDLPCDVELVMKIFGGGELERKIMEKSGCLSYASTT 897
Query: 894 WDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDHF 953
W+ KPGV ER LSY++N +VS+FGG VTC QQKSP + EGWI+NE+++LHDVPF DHF
Sbjct: 898 WESKKPGVYERRLSYKYNHYVSVFGGGVTCAQQKSPAPNDEGWILNEIVALHDVPFGDHF 957
Query: 954 RVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVERE 1013
RVH RYE++K+ + KC +Y+ I WLK+ KF+QRI+++I EKF +R K + +L ++E
Sbjct: 958 RVHIRYEVKKAGVDCKTSKCEVYLKIRWLKTIKFEQRISKSIMEKFRNRFKVIFDLFQKE 1017
|
|
| UNIPROTKB|Q5Z6I4 OSJNBa0055N24.36 "Putative Osnop" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2296 (813.3 bits), Expect = 3.7e-238, P = 3.7e-238
Identities = 474/1043 (45%), Positives = 668/1043 (64%)
Query: 5 RLYVYVLQGQDLLA-------KDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNID 57
RL V V + ++L A D Y K+Q+G+ + K+R+ K +P W+EEF FRV ++
Sbjct: 2 RLLVQVSEARNLPAIDGGGGLSDPYAKLQLGRQRGKTRVAKRTLSPTWDEEFAFRVVDLK 61
Query: 58 DEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTN 117
DE +VV V D+ F S + +G+VRVP+S++ DN L W+ L PK++K
Sbjct: 62 DELVVVVV----DEDRYF--SDDFLGQVRVPLSAVLDADNRSLGTQWYQL-LPKSKKSKI 114
Query: 118 KDCGKILLTISLNGK--------GHNLSSNRLLYLHSNVSSNESKELED-PCVLSHDVSC 168
KD G+I LTISL+ H +S + Y + + L + P + VS
Sbjct: 115 KDYGEIRLTISLSLNYPEETTTLAHCVSDDLASYSDKSTELQKGSSLPNIPIEIPTSVSG 174
Query: 169 SKAPCLDVTEGNHLMKAMVSHLEKIFNKNDQGLKTEDSSELSSTPSDYEDCVEEHP---- 224
+ + ++ + + V+ L + F+ + + S+ +T D +EE P
Sbjct: 175 GDETEIIKEDRSNGVPSFVNRLYQFFSAKPKDAEASASAPPLTTGDGNSDILEETPSTSS 234
Query: 225 --PSH-NFEEAIKMMQSRENEGDMPENLQGGILLDQLYQVSPCDLNTFLFAPDSQ----F 277
P + ++E + M + + +G + + L D + AP F
Sbjct: 235 ELPDNQDYETGVTMSFDEQLKA-FGSCHEGNEIPENLSGGVLID-QVYAVAPSDLNGLLF 292
Query: 278 RKDLAELQGTKDVQEGPW----EWK-SGEMTCLTRAVSYMXXXXXXXXXXXXXEQQTYLK 332
LQ ++Q +W+ + L R VSY E +YLK
Sbjct: 293 SPSSDFLQSLAEMQGTTGLEIQQWRLENDGEVLKRVVSYTKAPTALVKAVKATEDVSYLK 352
Query: 333 ANGQEFAILVTVSTPDVPYGNTFNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMM 392
A+G +A L VSTPDVP+GN+F V++L I+PGPEL E SS L++SW ++F QSTMM
Sbjct: 353 ADGDIYATLADVSTPDVPFGNSFRVEVLTCIMPGPELPDNEKSSRLVVSWRLNFIQSTMM 412
Query: 393 RGMIEGGARQGLKESFEQFANLLAQNLKILDSKDASDKDHMLATLQTEQQSDWELASEYF 452
+GMIE GA+QGLK+++ QF+ LLA+N++ +DSKDA+ D +L+++Q EQ+SDW+LA F
Sbjct: 413 KGMIENGAKQGLKDNYIQFSELLARNIRPVDSKDAAATDKVLSSVQPEQESDWKLAFRIF 472
Query: 453 WNFTVVSAGFMILYVVVHILLCEPSKRQGLEFYGLDLPDSFGELISCGILVIQLEQVFNM 512
NFTVVS+ +YV HI+L PS QGLEF GLDLPDS GE++ CG+LV+Q ++V NM
Sbjct: 473 GNFTVVSSLVAFIYVFSHIILASPSIIQGLEFPGLDLPDSVGEVVVCGVLVLQGQRVLNM 532
Query: 513 VGHFVRARLRKGSDHGVKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTS 572
+ F++A+ ++GSDHGVKAQG+GW+LTVAL++G NLA+++ +G SDPYVVFTCNGKT+TS
Sbjct: 533 IARFIQAKRQRGSDHGVKAQGNGWLLTVALIDGTNLAATKSSGYSDPYVVFTCNGKTKTS 592
Query: 573 SVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELA 632
S++ T +P+W++I EFDAME+PPSV+ + V+DFDGPFD+ SLGHAE+NFLK +EL+
Sbjct: 593 SIKFHTLEPRWNEIFEFDAMEDPPSVMKINVYDFDGPFDEVESLGHAEVNFLKSNLSELS 652
Query: 633 DMWVSLEGKLAQSAQSKVHLRIFLENNNGVETIKEYLTKMEKEVGKKLNLRSPHRNSTFQ 692
D+W+ L+GKLAQ+ QSK+HLRI L N+ G E +K+YL KMEKEVGKK+ +RSPH NS FQ
Sbjct: 653 DIWIPLKGKLAQACQSKLHLRIILNNSRGTEVMKDYLDKMEKEVGKKIAVRSPHTNSAFQ 712
Query: 693 KLFALPPEEFLIKDFTCYLKRKMPLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQ 752
K+F+LPPEEFLI DFTC+LKRKM QGRLFLS RI+GFY NLFG+KTKFFFLWEDIEDIQ
Sbjct: 713 KIFSLPPEEFLINDFTCHLKRKMLTQGRLFLSPRIIGFYTNLFGHKTKFFFLWEDIEDIQ 772
Query: 753 ILSPSLATVGSPSLVIILWKGRGLDARHGAKSQDEEGRLRFYFQSFVSFNDASRTIMALW 812
++ +L ++GSPSL+IIL KGRG+DARHGAK D EGRL+F+FQSFVSFN A +TIMALW
Sbjct: 773 VMPATLYSMGSPSLLIILHKGRGMDARHGAKQLDNEGRLKFHFQSFVSFNVAHKTIMALW 832
Query: 813 RSRTLTAYXXXXXXXXXXXXXXMSTAADRGSVPNFEDAKMSKVYNAELPISVKALMEMFD 872
++R+LT + + S EDAKMS+V+++ P V LM +F+
Sbjct: 833 KARSLTPEQKVQLVEEESEMKDLQNN-ESDSFLGIEDAKMSEVFSSTKPFDVSTLMSIFE 891
Query: 873 GGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLAS 932
GG LEHQVMEK GC Y +PW+ V+ +R + Y+F++ ++ GEV TQQKSPL
Sbjct: 892 GGPLEHQVMEKIGCMEYSVSPWESVRADAYQRQIHYKFDKRLARHEGEVMSTQQKSPLPD 951
Query: 933 GEGWIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRIT 992
GW+V EVM+L +P ++F +H RY++E+ AC + IGI+WLKS K +++I
Sbjct: 952 KNGWLVEEVMTLEGIPVGEYFNLHMRYQLEQISSKPKACNVQVSIGIAWLKSCKNRKKIA 1011
Query: 993 QNITEKFTHRLKEMIELVEREIL 1015
Q + + RLK+M L+E+E+L
Sbjct: 1012 QEVLSSASSRLKKMFGLLEKELL 1034
|
|
| UNIPROTKB|Q66VB0 Os06g0607900 "Os06g0607900 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2096 (742.9 bits), Expect = 1.2e-236, Sum P(2) = 1.2e-236
Identities = 386/804 (48%), Positives = 555/804 (69%)
Query: 219 CVEEH--PPS-----HNFEEAIKMMQSRENEGDMPENLQGGILLDQLYQVSPCDLNTFLF 271
C E+H P S + +E +K M+S++ +MP NL GG+L+D+ Y +P +LN+ LF
Sbjct: 280 CSEDHETPESGTSSESSLDELLKTMESKDQGCEMPANLPGGVLIDESYVAAPTELNSLLF 339
Query: 272 APDSQFRKDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMXXXXXXXXXXXXXEQQTYL 331
+ +S F ++ELQGT Q PW+ + E TCL R ++Y E+Q YL
Sbjct: 340 SKNSDFWPAVSELQGTSGFQIEPWKLDNNE-TCLQRTLTYTKAASKLVKAVKATEEQKYL 398
Query: 332 KANGQEFAILVTVSTPDVPYGNTFNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTM 391
KA G FA+ VSTPDVP G F +++LY I PGP LSS E +SHL +SW ++F QSTM
Sbjct: 399 KAAGNSFAVHSVVSTPDVPCGGCFKIEILYCITPGPSLSSEEQTSHLTVSWRVNFVQSTM 458
Query: 392 MRGMIEGGARQGLKESFEQFANLLAQNLKILDSKDA-SDKDHMLATLQTEQQSDWELASE 450
M+GMIE GA+QG+ E F F+ +L+Q +K+ ++ DA S+K+ +L++L +++S W L
Sbjct: 459 MKGMIESGAKQGMAEGFAHFSEILSQKIKVAEADDANSNKEKILSSLHAQKESGWRLIVR 518
Query: 451 YFWNFTVVSAGFMILYVVVHILLCEPSKRQGLEFYGLDLPDSFGELISCGILVIQLEQVF 510
+ +NFT + + + YV+ H+ L +P+ GLE++G+DLPDS GE++ C +L++Q + +F
Sbjct: 519 FLFNFTFIFSVIIASYVIAHLHLSKPNAMHGLEYFGIDLPDSIGEVVVCAVLILQGQNIF 578
Query: 511 NMVGHFVRARLRKGSDHGVKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTR 570
N++ F+ A +KGSDHGVKA GDGW++TVAL+EG + +S L D Y VFTCN K +
Sbjct: 579 NIIKRFLNAWKQKGSDHGVKAHGDGWLMTVALIEGTGITNSNSKELFDMYAVFTCNAKRK 638
Query: 571 TSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTE 630
TSSV+ QT +P+W++I EFDAM++PPS +DV + D +GPFDQ+ +GHAE+NFLK ++
Sbjct: 639 TSSVKFQTSEPKWNEIYEFDAMDDPPSRMDVAIHDANGPFDQSP-IGHAEVNFLKSNLSD 697
Query: 631 LADMWVSLEGKLAQSAQSKVHLRIFLENNNGVETIKEYLTKMEKEVGKKLNLRSPHRNST 690
L D+W+ LEGK Q++ K+HLRIFL N+ G E + YL KM KEVGKK+NLRS N+
Sbjct: 698 LTDVWLPLEGKCDQTSNPKIHLRIFLNNSRGTEVVMNYLAKMRKEVGKKINLRSAQTNAA 757
Query: 691 FQKLFALPPEEFLIKDFTCYLKRKMPLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIED 750
F+KLF LPPEEFLI DFTC+LKRKMPLQGRLF S RI+GFY+N+FG+KTKFFFLW+D++D
Sbjct: 758 FRKLFNLPPEEFLIDDFTCHLKRKMPLQGRLFFSPRIIGFYSNIFGHKTKFFFLWDDVDD 817
Query: 751 IQILSPSLATVGSPSLVIILWKGRGLDARHGAKSQDEEGRLRFYFQSFVSFNDASRTIMA 810
IQ++ P+L+ +GSPSL IIL KGRGL+A+HGAK D GRL++YFQSFVSFNDA R IMA
Sbjct: 818 IQVIPPTLS-IGSPSLTIILRKGRGLEAKHGAKGTDPNGRLKYYFQSFVSFNDAHRIIMA 876
Query: 811 LWRSRTLTAYXXXXXXXXXXXXXXMSTAADRGSVPNFEDAKMSKVYNAELPISVKALMEM 870
+W+ R+L+ + + G++ ED KMS+++++ L + V++LMEM
Sbjct: 877 IWKMRSLSPEQQGDMIEKESDTKELQLE-EGGTLFTHEDVKMSEIFSSALSVDVESLMEM 935
Query: 871 FDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPL 930
F GG LEH++M+K+GC +Y T W+LV + +R +SY+F++++S +GGE T TQQ+ L
Sbjct: 936 FSGGPLEHRMMQKAGCIDYSPTEWELVSRNIYQRQISYKFDKNLSRYGGEATTTQQRYAL 995
Query: 931 ASGEGWIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQR 990
+ EGW + EVMSL V D F V +Y + P N C + +GI+WLKSTK Q++
Sbjct: 996 VNQEGWAIEEVMSLQGVLLGDCFNVQMKYTVVNVPSKPNTCSVQVLLGIAWLKSTKQQKK 1055
Query: 991 ITQNITEKFTHRLKEMIELVEREI 1014
IT+++ + RLKE+ VE+++
Sbjct: 1056 ITKSVISNSSIRLKELFAEVEKDL 1079
|
|
| UNIPROTKB|Q69V64 P0556B08.10 "C2 domain-containing protein-like" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 179/347 (51%), Positives = 248/347 (71%)
Query: 668 YLTKMEKEVGKKLNLRSPHRNSTFQKLFALPPEEFLIKDFTCYLKRKMPLQGRLFLSARI 727
YL KM KEVGKK+NLRS N+ F+KLF LPPEEFLI DFTC+LKRKMPLQGRLF S RI
Sbjct: 3 YLAKMRKEVGKKINLRSAQTNAAFRKLFNLPPEEFLIDDFTCHLKRKMPLQGRLFFSPRI 62
Query: 728 VGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGRGLDARHGAKSQDE 787
+GFY+N+FG+KTKFFFLW+D++DIQ++ P+L+ +GSPSL IIL KGRGL+A+HGAK D
Sbjct: 63 IGFYSNIFGHKTKFFFLWDDVDDIQVIPPTLS-IGSPSLTIILRKGRGLEAKHGAKGTDP 121
Query: 788 EGRLRFYFQSFVSFNDASRTIMALWRSRTLTAYXXXXXXXXXXXXXXMSTAADRGSVPNF 847
GRL++YFQSFVSFNDA R IMA+W+ R+L+ + + G++
Sbjct: 122 NGRLKYYFQSFVSFNDAHRIIMAIWKMRSLSPEQQGDMIEKESDTKELQLE-EGGTLFTH 180
Query: 848 EDAKMSKVYNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLS 907
ED KMS+++++ L + V++LMEMF GG LEH++M+K+GC +Y T W+LV + +R +S
Sbjct: 181 EDVKMSEIFSSALSVDVESLMEMFSGGPLEHRMMQKAGCIDYSPTEWELVSRNIYQRQIS 240
Query: 908 YRFNRHVSIFGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLA 967
Y+F++++S +GGE T TQQ+ L + EGW + EVMSL V D F V +Y + P
Sbjct: 241 YKFDKNLSRYGGEATTTQQRYALVNQEGWAIEEVMSLQGVLLGDCFNVQMKYTVVNVPSK 300
Query: 968 HNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREI 1014
N C + +GI+WLKSTK Q++IT+++ + RLKE+ VE+++
Sbjct: 301 PNTCSVQVLLGIAWLKSTKQQKKITKSVISNSSIRLKELFAEVEKDL 347
|
|
| TAIR|locus:2097578 AT3G59660 "AT3G59660" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 273 (101.2 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
Identities = 114/501 (22%), Positives = 214/501 (42%)
Query: 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEP 595
+++ V L+ NL + + G SDPY + C + R SS+ + +P W + F +E
Sbjct: 81 YIVKVELLAAKNLIGANLNGTSDPYAIVNCGSEKRFSSMVPGSRNPMWGEEFNFPT-DEL 139
Query: 596 PSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIF 655
P+ ++V + D+D + ++T LG IN + T +W SL+ + S Q +++
Sbjct: 140 PAKINVTIHDWDIIW-KSTVLGSVTINVEREGQT--GPVWHSLD---SPSGQVCLNINAI 193
Query: 656 LENNNGVETIKEYLTKMEKEVGKKLNLRSP---HRN-STFQKLFALPPEEFLIKDFTCYL 711
N + Y + V L+ + P H+ Q +F L P+E + ++C L
Sbjct: 194 KLPVNAPRAVTGYAGAGRRRV--TLDQQGPTIVHQKPGPLQTIFDLLPDEVVEHSYSCAL 251
Query: 712 KRKMPLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILW 771
+R GR+++SA + F++N+F + K DI++I+ +L +P++ IIL
Sbjct: 252 ERSFLYHGRMYVSAWHICFHSNVFSKQMKVVVPLGDIDEIRRSQHALI---NPAITIILR 308
Query: 772 KGRGLDARHGAKSQDE-EGRLRFYFQSFVSFNDASRTIM-------ALW----RSRTLTA 819
G G HG +GR+R+ F SF + N + + A+ + R +A
Sbjct: 309 MGAG---GHGVPPLGTPDGRVRYKFASFWNRNHTLKALQRAVNNYHAMLEVEKKERAQSA 365
Query: 820 YXXXXXXXXXXXXXXMSTAADRGSVP-NFE----DAKMSKVYN---AELPISVKALMEMF 871
+ D +VP F+ + + +YN A P V ++ +
Sbjct: 366 LRAHSSSVKGGGKVQVKAPEDTAAVPVKFQAFIKEEVLVNIYNDVFASTPEQVLNVL-LA 424
Query: 872 DGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCE-RHLSYRFNRHVSIFGGEVTCTQ-QKSP 929
D ++ N PW + + R + +R + + + T+ Q
Sbjct: 425 DDSTYTNEYRSARKDKNLNIEPWHTAEEYDGQVREIKFRSICNSPMCPPDTAVTEWQHVV 484
Query: 930 LASGEGWIVNE-VMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQ 988
L+ + +V E V HDVPF +F VH R+ +E + I +G+ + K Q
Sbjct: 485 LSPDKKVLVFETVQQPHDVPFGSYFEVHCRWRLEAKDETSSVID--IRVGVHFKKWCLMQ 542
Query: 989 QRITQNITEKFTHRLKEMIEL 1009
+I +++ ++ M+E+
Sbjct: 543 SKIKAGAIDEYKKEVEVMLEV 563
|
|
| UNIPROTKB|Q6DN14 MCTP1 "Multiple C2 and transmembrane domain-containing protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 135 (52.6 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 30/106 (28%), Positives = 54/106 (50%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPP 596
++++ L+EG +L + + GLSDPYV F + S + +T +PQW + +F EE
Sbjct: 471 IVSITLIEGRDLKAMDSNGLSDPYVKFRLGHQKYKSKIMPKTLNPQWREQFDFHLYEERG 530
Query: 597 SVLDVEVFDFD-GPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641
V+D+ +D D G D +++ L T ++ + EG+
Sbjct: 531 GVIDITAWDKDAGKRDDFIGRCQVDLSALSREQTHKLELQLE-EGE 575
|
|
| UNIPROTKB|E1C578 MCTP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 140 (54.3 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 35/118 (29%), Positives = 59/118 (50%)
Query: 525 SDHGVKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWH 584
SD K+Q ++++ L+EG L + + GLSDPYV F + S + +T +PQW
Sbjct: 153 SDLHRKSQLWRGIVSITLIEGRELKAMDANGLSDPYVKFRLGHQKYKSKIMPKTLNPQWR 212
Query: 585 DILEFDAMEEPPSVLDVEVFDFD-GPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641
+ +F EE ++D+ V+D D G D +++ L T +M + EG+
Sbjct: 213 EQFDFHLYEERGGIIDITVWDKDAGKKDDFIGRCQVDLSTLSKEQTHKLEMLLE-EGE 269
|
|
| RGD|1305199 Mctp1 "multiple C2 domains, transmembrane 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 136 (52.9 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 35/127 (27%), Positives = 59/127 (46%)
Query: 516 FVRARLRKGSDHGVKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQ 575
F LR H G ++++ L+EG +L + + GLSDPYV F + S +
Sbjct: 398 FQTQSLRLSDQHRKSHLWRG-IVSITLIEGRDLKAMDSNGLSDPYVKFRLGHQKYKSKIM 456
Query: 576 LQTCDPQWHDILEFDAMEEPPSVLDVEVFDFD-GPFDQATSLGHAEINFLKHTSTELADM 634
+T +PQW + +F EE V+D+ +D D G D +++ L T ++
Sbjct: 457 PKTLNPQWREQFDFHLYEERGGVMDITAWDKDAGKRDDFIGRCQVDLSSLSREQTHKLEL 516
Query: 635 WVSLEGK 641
+ EG+
Sbjct: 517 QLE-EGE 522
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| ZFIN|ZDB-GENE-050506-136 mctp2b "multiple C2 domains, transmembrane 2b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 115 (45.5 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 40/125 (32%), Positives = 64/125 (51%)
Query: 20 DSYVKVQI-GKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78
D YVKV++ GK KS+++ N NPVWNE F F + +++ + + + VF D L +S
Sbjct: 73 DPYVKVKLDGKMVYKSKVVLKNLNPVWNESFTFPIRSLE-QTVFIKVF----DRDL--TS 125
Query: 79 GELMGRVRVPVSSIAAEDN-HMLPPTWFSLETPKTRKFTNKDCGKILLTI--SLNGKGHN 135
+ MG V + + E M+ P L+ P + + +D G I + I S+ G G N
Sbjct: 126 DDFMGSCSVGLDKLELEKTTEMVLP----LDDPNSLE---EDMGFIAIDICVSMRG-GKN 177
Query: 136 LSSNR 140
+R
Sbjct: 178 KKQSR 182
|
|
| TAIR|locus:2009492 AT1G22610 "AT1G22610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 151 (58.2 bits), Expect = 6.9e-09, Sum P(3) = 6.9e-09
Identities = 48/167 (28%), Positives = 80/167 (47%)
Query: 6 LYVYVLQGQDLLAKD------SYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDE 59
LYV V++ +DL D YV+V++G +K ++ L+ NSNP+W + F F +
Sbjct: 296 LYVSVVKARDLPVMDVSGSLDPYVEVKLGNYKGLTKHLEKNSNPIWKQIFAFSKERLQSN 355
Query: 60 ELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAE--DNHMLPPTWFSLETPKTRKFTN 117
L V+V D L + + +GRV + ++ + + L P W+ LE K K TN
Sbjct: 356 LLEVTV----KDKDLL-TKDDFVGRVHIDLTEVPLRVPPDSPLAPQWYRLEDKKGMK-TN 409
Query: 118 KDCGKILLTISLNGKGHNL-----SSNRLLYLHSNVSSNESKELEDP 159
+ G+I+L + + + S+ HSN+S+ SK P
Sbjct: 410 R--GEIMLAVWMGTQADESFPDAWHSDAHRVSHSNLSNTRSKVYFSP 454
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FGS8 | C2GR2_ARATH | No assigned EC number | 0.5813 | 0.9814 | 0.9785 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00015990001 | SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (995 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1024 | |||
| cd13219 | 161 | cd13219, PH-GRAM_C2-GRAM, C2 and GRAM domain-conta | 1e-102 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 5e-20 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 4e-18 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 3e-17 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 2e-16 | |
| smart00568 | 60 | smart00568, GRAM, domain in glucosyltransferases, | 4e-16 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 7e-16 | |
| pfam02893 | 60 | pfam02893, GRAM, GRAM domain | 6e-14 | |
| cd13220 | 111 | cd13220, PH-GRAM_GRAMDC, GRAM domain-containing pr | 1e-13 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 3e-13 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 2e-12 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 2e-12 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 2e-11 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 2e-11 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 2e-11 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 3e-11 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 5e-11 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 7e-11 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 2e-10 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 2e-10 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 3e-10 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 3e-10 | |
| cd13351 | 125 | cd13351, PH-GRAM1_TCB1D9_TCB1D9B, TBC1 domain fami | 5e-10 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 7e-10 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 6e-09 | |
| cd04017 | 135 | cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe | 1e-08 | |
| cd13216 | 117 | cd13216, PH-GRAM2_AGT26, Autophagy-related protein | 1e-08 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 3e-08 | |
| cd10570 | 94 | cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltran | 5e-08 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 6e-08 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 7e-08 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 7e-08 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 7e-08 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 9e-08 | |
| cd13350 | 135 | cd13350, PH-GRAM1_TBC1D8B, TBC1 domain family memb | 1e-07 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 2e-07 | |
| cd04036 | 119 | cd04036, C2_cPLA2, C2 domain present in cytosolic | 2e-07 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 2e-07 | |
| cd04015 | 158 | cd04015, C2_plant_PLD, C2 domain present in plant | 3e-07 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 4e-07 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 5e-07 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 7e-07 | |
| cd08386 | 125 | cd08386, C2A_Synaptotagmin-7, C2A domain first rep | 9e-07 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 1e-06 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 2e-06 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 2e-06 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 2e-06 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 2e-06 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 2e-06 | |
| cd08385 | 124 | cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain | 2e-06 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 5e-06 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 6e-06 | |
| cd08403 | 134 | cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s | 7e-06 | |
| cd13217 | 100 | cd13217, PH-GRAM1_TCB1D8_TCB1D9_family, TCB1D8 and | 7e-06 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 1e-05 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 2e-05 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 2e-05 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 2e-05 | |
| cd04017 | 135 | cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe | 3e-05 | |
| cd08403 | 134 | cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s | 3e-05 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 3e-05 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 4e-05 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 4e-05 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 4e-05 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 5e-05 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 6e-05 | |
| cd04018 | 151 | cd04018, C2C_Ferlin, C2 domain third repeat in Fer | 6e-05 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 7e-05 | |
| cd08410 | 135 | cd08410, C2B_Synaptotagmin-17, C2 domain second re | 8e-05 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 9e-05 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 1e-04 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 1e-04 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 2e-04 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 2e-04 | |
| cd08408 | 138 | cd08408, C2B_Synaptotagmin-14_16, C2 domain second | 2e-04 | |
| cd08387 | 124 | cd08387, C2A_Synaptotagmin-8, C2A domain first rep | 2e-04 | |
| cd08678 | 126 | cd08678, C2_C21orf25-like, C2 domain found in the | 3e-04 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 4e-04 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 4e-04 | |
| cd08388 | 128 | cd08388, C2A_Synaptotagmin-4-11, C2A domain first | 4e-04 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 4e-04 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 4e-04 | |
| cd04032 | 127 | cd04032, C2_Perforin, C2 domain of Perforin | 5e-04 | |
| cd08387 | 124 | cd08387, C2A_Synaptotagmin-8, C2A domain first rep | 6e-04 | |
| cd08685 | 119 | cd08685, C2_RGS-like, C2 domain of the Regulator O | 6e-04 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 8e-04 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 0.001 | |
| cd13349 | 135 | cd13349, PH-GRAM1_TBC1D8, TBC1 domain family membe | 0.001 | |
| cd08404 | 136 | cd08404, C2B_Synaptotagmin-4, C2 domain second rep | 0.001 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 0.002 | |
| cd08688 | 110 | cd08688, C2_KIAA0528-like, C2 domain found in the | 0.002 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 0.002 | |
| cd04041 | 111 | cd04041, C2A_fungal, C2 domain first repeat; funga | 0.002 | |
| cd04014 | 132 | cd04014, C2_PKC_epsilon, C2 domain in Protein Kina | 0.002 | |
| cd04014 | 132 | cd04014, C2_PKC_epsilon, C2 domain in Protein Kina | 0.002 | |
| cd08409 | 137 | cd08409, C2B_Synaptotagmin-15, C2 domain second re | 0.002 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 0.003 | |
| cd04020 | 162 | cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat | 0.003 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 0.004 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 0.004 |
| >gnl|CDD|241373 cd13219, PH-GRAM_C2-GRAM, C2 and GRAM domain-containing protein Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain | Back alignment and domain information |
|---|
Score = 315 bits (809), Expect = e-102
Identities = 125/161 (77%), Positives = 143/161 (88%), Gaps = 1/161 (0%)
Query: 670 TKMEKEVGKKLNLRSPHRNSTFQKLFALPPEEFLIKDFTCYLKRKMPLQGRLFLSARIVG 729
+KMEKEVGKK+NLRSP +NS FQKLF LPPEEFLI DFTC LKRK PLQGRLFLSARI+G
Sbjct: 1 SKMEKEVGKKINLRSPQKNSAFQKLFGLPPEEFLINDFTCALKRKFPLQGRLFLSARIIG 60
Query: 730 FYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGRGLDARHGAKSQDEEG 789
FY+NLFG+KTKFFFLWEDIE+IQ+ PSL +VGSPS+VIIL KGRGLDARHGAK QD EG
Sbjct: 61 FYSNLFGHKTKFFFLWEDIEEIQVSPPSL-SVGSPSIVIILRKGRGLDARHGAKPQDPEG 119
Query: 790 RLRFYFQSFVSFNDASRTIMALWRSRTLTAYQKEQIAEEQQ 830
RL+F+FQSFVSFN A RTIMALW++R+L+ QK+QI EE +
Sbjct: 120 RLKFHFQSFVSFNHAFRTIMALWKNRSLSPEQKKQIVEESE 160
|
C2GRAM contains two N-terminal C2 domains followed by a single PH-GRAM domain. Since it contains both of these domains it is assumed that this gene cross-links both calcium and phosphoinositide signaling pathways. In general he C2 domain is involved in binding phospholipids in a calcium dependent manner or calcium independent manner. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 161 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 5e-20
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 14/109 (12%)
Query: 6 LYVYVLQGQDLLAK------DSYVKVQIGKHKS-KSRILKNNSNPVWNEEFVFRVHNIDD 58
L V V++ ++L AK D YVKV +G + K++++KN NPVWNE F F V + +
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60
Query: 59 EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107
+ L V V+ + S + +G V +P+S + W L
Sbjct: 61 DTLTVEVWDKDR-----FSKDDFLGEVEIPLSELLDSGKEG--ELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 4e-18
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 5 RLYVYVLQGQDLLAK------DSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFRVHN 55
L V ++ ++L K D YVKV + K K K++++KN NPVWNE F F V
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 56 IDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNH 98
+ EL + V+ + + +G+V +P+S + H
Sbjct: 61 PELAELEIEVYDKDRF-----GRDDFIGQVTIPLSDLLLGGRH 98
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 3e-17
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 14/90 (15%)
Query: 6 LYVYVLQGQDLLAKDS------YVKVQIG---KHKSKSRILKNNSNPVWNEEFVFRVHNI 56
L V V+ ++L KD YVKV +G K K++++KN NPVWNE F F V
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 57 DDEELVVSVFQHNDDSGLFGSSGELMGRVR 86
+ EL + V+ D FG + +G V
Sbjct: 61 ELAELRIEVY----DYDRFGKD-DFIGEVT 85
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Length = 85 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 2e-16
Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 24/144 (16%)
Query: 6 LYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKN-NSNPVWNEEFVFRVHNIDD 58
L V V++ QDL+ D +VK Q+G ++R + N NP WNEE +F +
Sbjct: 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFE 61
Query: 59 EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAA-EDNHMLPPTWFSLETP------- 110
+ L++SV D G + E +GR +P++ I D+ +P WFSLE P
Sbjct: 62 DHLILSV---EDRVG--PNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQK 116
Query: 111 KTRKFTNKDCGKILLTISLNGKGH 134
K RKF +I L + L+G H
Sbjct: 117 KKRKF----ASRIHLRLCLDGGYH 136
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 4e-16
Identities = 26/56 (46%), Positives = 34/56 (60%)
Query: 697 LPPEEFLIKDFTCYLKRKMPLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQ 752
LP EE LI D++CYL R P+QGRL++S + F +NL G TK DI I+
Sbjct: 2 LPEEEKLIADYSCYLSRTGPVQGRLYISNYRLCFRSNLPGKLTKVVIPLADITRIE 57
|
Length = 60 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 7e-16
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPP 596
L V ++E NL + ++ G SDPYV + GK + V T +P W++ EF ++
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60
Query: 597 SVLDVEVFDFDGPFDQATSLGHAEIN-FLKHTSTELADMWVSL 638
L VEV+D D F + LG EI S + ++W+ L
Sbjct: 61 DTLTVEVWDKD-RFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|217271 pfam02893, GRAM, GRAM domain | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 6e-14
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 697 LPPEEFLIKDFTCYLKRKM-PLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILS 755
LPPEE LI D++CYL+R + P+QGRL+L+ + F ++ FG+ T DIE ++
Sbjct: 1 LPPEEKLIADYSCYLQRPISPVQGRLYLTNNRLCFRSDKFGDLTVLVIPLADIERVEKEK 60
|
The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Length = 60 |
| >gnl|CDD|241374 cd13220, PH-GRAM_GRAMDC, GRAM domain-containing protein (GRAMDC) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 1e-13
Identities = 25/60 (41%), Positives = 40/60 (66%)
Query: 692 QKLFALPPEEFLIKDFTCYLKRKMPLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDI 751
+ +LP +E LI D++C L+R + LQGRL++S + FY+N+FG +TK ++DI I
Sbjct: 1 KLFKSLPDDERLIDDYSCALQRDILLQGRLYISENHICFYSNIFGWETKLVIPFKDITSI 60
|
The GRAMDC proteins are membrane proteins. Nothing is known about its function. Members include: GRAMDC1A, GRAMDC1B, GRAMDC1C, GRAMDC2, GRAMDC3, GRAMDC4, and GRAMDC-like proteins. All of the members, except for GRAMDC4 are included in this hierarchy. Each contains a single PH-GRAM domain at their N-terminus. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 111 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 3e-13
Identities = 28/70 (40%), Positives = 44/70 (62%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPS 597
L ++E +LA + G SDP+V NG+T +SV ++C P+W+++ EF+ ME S
Sbjct: 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADS 61
Query: 598 VLDVEVFDFD 607
L VEV+D+D
Sbjct: 62 PLSVEVWDWD 71
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 2e-12
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNG---KTRTSSVQLQTCDPQWHDILEFDAMEE 594
L V ++ NL ++ G SDPYV + G T+ + V T +P W++ F+
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 595 PPSVLDVEVFDFDGPFDQATSLGHAE 620
+ L +EV+D+D F + +G
Sbjct: 61 ELAELRIEVYDYDR-FGKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-12
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPP 596
+L V +V G NLA + T SDPYVV T + + V + +P W++ L ++ P
Sbjct: 3 LLKVRVVRGTNLAVRDFTS-SDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTL-SVPNPM 60
Query: 597 SVLDVEVFDFDGPFDQATSLGHAEINF 623
+ L +EVFD D F + S+G AEI+
Sbjct: 61 APLKLEVFDKD-TFSKDDSMGEAEIDL 86
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 2e-11
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG---KTRTSSVQLQTCDPQWHDILEFDAME 593
LTV ++ NL + G SDPYV + +G + + + V T +P W++ EF+
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 594 EPPSVLDVEVFDFDGPFDQATSLGHAEINF 623
+ L++EV+D D F + +G I
Sbjct: 61 PELAELEIEVYDKDR-FGRDDFIGQVTIPL 89
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-11
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 6 LYVYVLQGQDLLAKDS------------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRV 53
L ++V++ QDL+AKD YV V++G KS+++K N NP WNE + V
Sbjct: 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVV 62
Query: 54 HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSI 92
+ +EL + +F + D F +GR+ + + S+
Sbjct: 63 DEVPGQELEIELFDEDPDKDDF------LGRLSIDLGSV 95
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 2e-11
Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 18/116 (15%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDD 58
++ + V+ Q L+AKD YV VQ+GK K +++ + N NPVWNE+F F HN D
Sbjct: 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSD 61
Query: 59 EELVVSVFQHNDD------SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108
+ V V+ +DD S + +G+ + V +++ E + W++LE
Sbjct: 62 -RIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSGEMD-----VWYNLE 111
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 3e-11
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 9/128 (7%)
Query: 537 VLTVALVEGVNLASSEM--TGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEE 594
VL V +VE +LA+ + G SDPY + + + + T +P+W+ EF
Sbjct: 2 VLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSA 61
Query: 595 PPSVLDVEVFDFDGPFDQATSLGHAEINF---LKHTSTELADMWVSLEGKLAQSAQSK-- 649
+L + ++D D F LG +I T +D W++L+
Sbjct: 62 QNQLLKLILWDKD-RFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSG 120
Query: 650 -VHLRIFL 656
+HL+
Sbjct: 121 EIHLQFSW 128
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 5e-11
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 15/113 (13%)
Query: 5 RLYVYVLQGQDLLAKD------SYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVH---N 55
+L V V+ QDL+ KD +YV++ K ++R + NPVWNE+ VF V
Sbjct: 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSR 60
Query: 56 IDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108
+ + L V V+ G +GRVR+ +S ++ + LE
Sbjct: 61 LSNLVLEVYVYNDRR----SGRRRSFLGRVRISGTSFVPPSEAVV--QRYPLE 107
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 7e-11
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 21/133 (15%)
Query: 8 VYVLQGQDLLAK------DSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFR-----VHNI 56
V VLQ + LL K D+YV +Q+GK K + + + ++PVW EE F N
Sbjct: 3 VTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNG 62
Query: 57 DDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPT-WFSLETPKTRKF 115
+ L ++V N L G + +G+V +P++ + +++ T WF LE+ +
Sbjct: 63 NRATLQLTVMHRN----LLGLD-KFLGQVSIPLNDL--DEDKGRRRTRWFKLESKPGKD- 114
Query: 116 TNKDCGKILLTIS 128
+K+ G+I + I
Sbjct: 115 -DKERGEIEVDIQ 126
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-10
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 8 VYVLQGQDL--LAKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNID----DEEL 61
V V++ + L D VKV++G K + + K + P +NE F F H D+ +
Sbjct: 8 VRVIEARQLVGGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKII 67
Query: 62 VVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
+SV+ DS S L+G ++ V ++ + +H W L P
Sbjct: 68 KISVY----DSRSLR-SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTDP 111
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-10
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPP 596
V+T+ LVEG NL + GLSDPYV F + S V +T +PQW + + ++
Sbjct: 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQS 60
Query: 597 SVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639
+L++EV+D D +G EI+ + + + LE
Sbjct: 61 QILEIEVWDKDTGKKDE-FIGRCEIDLSALPREQTHSLELELE 102
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 3e-10
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 23/128 (17%)
Query: 10 VLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVV 63
+++G++L D YVK ++G K KS++ NP W E+F + + + L +
Sbjct: 6 LVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEI 65
Query: 64 SVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKI 123
V+ + G E +GR + +S++ E H L LE + G +
Sbjct: 66 EVWDKD-----TGKKDEFIGRCEIDLSALPREQTHSL---ELELEDGE---------GSL 108
Query: 124 LLTISLNG 131
LL ++L G
Sbjct: 109 LLLLTLTG 116
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 3e-10
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 5 RLYVYVLQGQDL------LAKDSYVKVQIGKH-----KSKSRILKNNSNPVWNEEFVFRV 53
RL V VL+ ++L D YVKV + + K K+ + K NPV+NE F F V
Sbjct: 15 RLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDV 74
Query: 54 HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNH 98
EE+ + + + DS E++G+V + S E H
Sbjct: 75 PAEQLEEVSLVITVVDKDS---VGRNEVIGQVVLGPDSGGEELEH 116
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|241505 cd13351, PH-GRAM1_TCB1D9_TCB1D9B, TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1 | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 5e-10
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 691 FQKLFALPPEEFLIKDFTC-YLKRKMPLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIE 749
F KLF +P EE L+ ++C Y K K+P QG L+LS + FY+ L G +TK W D+
Sbjct: 5 FHKLFGMPEEEKLVNYYSCSYWKGKVPRQGWLYLSVNHLCFYSFLLGKETKLVIRWTDVT 64
Query: 750 DI 751
+
Sbjct: 65 QL 66
|
TBC1D9 and TCB1D9B may act as a GTPase-activating proteins for Rab family protein(s). TBC1D9 and TCB1D9B contain two N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the first repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 125 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 7e-10
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 15/109 (13%)
Query: 6 LYVYVLQGQDL-LAK-----DSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDE 59
L+VY+ ++L LAK YV++ +GK KS++ + +NPVW E F F V N +++
Sbjct: 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQ 61
Query: 60 ELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108
EL + V +G+ +G + +P+S + E + + F L+
Sbjct: 62 ELEIEVKDDK--------TGKSLGSLTLPLSELLKEPD-LTLDQPFPLD 101
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 6e-09
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 5 RLYVYVLQGQDLLA------KDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDD 58
RL V +++G+DL D Y +V +G + K++++ + NP WN F V +++
Sbjct: 16 RLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQ 75
Query: 59 EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAED 96
+ L ++VF D F S + +GR + V+ I E
Sbjct: 76 DVLCITVF----DRDFF-SPDDFLGRTEIRVADILKET 108
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-08
Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 27/141 (19%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDD 58
+L Y+ Q +DLLA D + +V ++ ++K +P W++ +F +
Sbjct: 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYG 61
Query: 59 E---------ELVVSVFQHNDDSGLFGSSGELMGRVR-VPVSSIAAEDNHMLPPTWFSLE 108
+VV +F + E +GR P+ + E++ WF +
Sbjct: 62 SPEEIAQNPPLVVVELFDQD-----SVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPI- 115
Query: 109 TPKTRKFTNKDCGKILLTISL 129
+ G++L L
Sbjct: 116 -----YKGGQSAGELLAAFEL 131
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135 |
| >gnl|CDD|241370 cd13216, PH-GRAM2_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 2 | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 1e-08
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 691 FQKLFALPPEEFLIKDFTCYLKRKMPLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIED 750
F+K FALP E L+ + YL+R +P+ G+L++S F + L G +TK +DIE+
Sbjct: 3 FRKHFALPESEKLLAYYYAYLQRVLPVYGKLYISDNYFCFRSLLPGTRTKMILPLKDIEN 62
Query: 751 IQILSPSLATVGSPSLVIILWKGRGLDARHGAKSQDEEGRLRFYFQSFVSFNDASRTI 808
++ G LVI++ G EE L F F S S +D +
Sbjct: 63 VEKEKGF--RFGYSGLVIVI---------RGH----EE--LFFEFSSAESRDDCEVLL 103
|
ATG26 (also called UGT51/UDP-glycosyltransferase 51), a member of the glycosyltransferase 28 family, resulting in the biosynthesis of sterol glucoside. ATG26 in decane metabolism and autophagy. There are 32 known autophagy-related (ATG) proteins, 17 are components of the core autophagic machinery essential for all autophagy-related pathways and 15 are the additional components required only for certain pathways or species. The core autophagic machinery includes 1) the ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and ATG27), 2) the phosphatidylinositol 3-kinase complex (ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7, ATG8, ATG10, ATG12, and ATG16). Less is known about how the core machinery is adapted or modulated with additional components to accommodate the nonselective sequestration of bulk cytosol (autophagosome formation) or selective sequestration of specific cargos (Cvt vesicle, pexophagosome, or bacteria-containing autophagosome formation). The pexophagosome-specific additions include the ATG30-ATG11-ATG17 receptor-adaptors complex, the coiled-coil protein ATG25, and the sterol glucosyltransferase ATG26. ATG26 is necessary for the degradation of medium peroxisomes. It contains 2 GRAM domains and a single PH domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 3e-08
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKT-RTSSVQLQTCDPQWHD--ILEFDAMEE 594
L + L EG NLA+ + G SDPYV F GKT S + +P W + L + + +
Sbjct: 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQ 61
Query: 595 PPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTEL 631
P L ++VFD+D +G A F+ ++ EL
Sbjct: 62 P---LYIKVFDYDRGL-TDDFMGSA---FVDLSTLEL 91
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 5e-08
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 19/113 (16%)
Query: 700 EEFLIKDFTCYLKRKMPLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLA 759
E + C P++G L+L+ + F + + T+ I ++ + S +
Sbjct: 1 LEKKDVTYICPF-HVGPVEGTLYLTNYRLYFKSKERDSPTELDVPLGVISRVEKVGGSSS 59
Query: 760 TVGSPSLVIILWKGRGLDARHGAKSQDEEGRLRFYFQSFVSFNDASRTIMALW 812
S L I + LRF +F + + R I L
Sbjct: 60 GENSYGLEITC---------------KDMRNLRF---AFKQEDHSRRDIFELL 94
|
Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 94 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 6e-08
Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 30/137 (21%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI-GKHKSKSRILKNNSNPVWNEEFVFRVHNID 57
+L +++ +G++L A+D YVK + GK KS+ + N NPVW+E+F I+
Sbjct: 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTL---PIE 57
Query: 58 D--EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIA---AEDNHMLPPTWFSLETPKT 112
D + L + VF ++ G + + MG V +S++ + + LE P
Sbjct: 58 DVTQPLYIKVFDYD-----RGLTDDFMGSAFVDLSTLELNKPTEVKL------KLEDPN- 105
Query: 113 RKFTNKDCGKILLTISL 129
+++D G I L ++L
Sbjct: 106 ---SDEDLGYISLVVTL 119
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 7e-08
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Query: 6 LYVYVLQG-----QDLLAKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEE 60
L V V++G +D + D YV + +G K K+R++K N NPVWNEE V N
Sbjct: 4 LKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMA-P 62
Query: 61 LVVSVFQHN----DDS 72
L + VF + DDS
Sbjct: 63 LKLEVFDKDTFSKDDS 78
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 7e-08
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 537 VLTVALVEGVNLASSEM------TGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFD 590
VL + ++E +L + + G SDPYV+ +T S V + +P+W+++ E
Sbjct: 2 VLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAV 61
Query: 591 AMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKV 650
E P L++E+FD D D+ LG I+ D W+ LE +S + +
Sbjct: 62 VDEVPGQELEIELFDEDP--DKDDFLGRLSIDLGSVEKKGFIDEWLPLED--VKSGRLHL 117
Query: 651 HL 652
L
Sbjct: 118 KL 119
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 7e-08
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 12/91 (13%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNG----KTRTSSVQLQTCDPQWHDILEFDAME 593
LTV ++ NL S++ G SDP+V F NG KT+T +T +P W++ E
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKT---IKKTLNPVWNESFEVPVPS 57
Query: 594 EPPSVLDVEVFDFD--GPFDQATSLGHAEIN 622
+VL VEV+D+D G D LG A I+
Sbjct: 58 RVRAVLKVEVYDWDRGGKDD---LLGSAYID 85
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 9e-08
Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 20/130 (15%)
Query: 6 LYVYVLQGQDLLAKD------SYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDE 59
L V V++ L A D + +++ + ++ + NP WN+ F F + +I D
Sbjct: 3 LQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHD- 61
Query: 60 ELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKD 119
L V+V+ + D E +G+V +P+ SI + W++L K +K +
Sbjct: 62 VLEVTVYDEDKD-----KKPEFLGKVAIPLLSIKNGERK-----WYAL---KDKKLRTRA 108
Query: 120 CGKILLTISL 129
G ILL + +
Sbjct: 109 KGSILLEMDV 118
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|241504 cd13350, PH-GRAM1_TBC1D8B, TBC1 domain family member 8B (TBC1D8B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1 | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-07
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 691 FQKLFALPPEEFLIKDFTC-YLKRKMPLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIE 749
F+K F LP +E L+ ++C Y + ++P QG L+LS + FY+ L G++ K W+ +
Sbjct: 15 FEKCFGLPQQEKLVTYYSCSYWRGRVPCQGWLYLSTNFLSFYSFLLGSEIKLIISWDAVS 74
Query: 750 DIQILSPSLAT 760
++ S + T
Sbjct: 75 KLEKTSNVILT 85
|
TBC1D8B may act as a GTPase-activating protein for Rab family protein(s). TBC1D8B contains an N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the first repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 135 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-07
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 6 LYVYVLQGQDLLAKDS------YVKVQI-GKHKSKSRILKNNSNPVWNEEFVFRVHNIDD 58
L V V+ ++L + D +VK + G+ K++ +K NPVWNE F V +
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVR 60
Query: 59 EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSI 92
L V V+ + G +L+G + +S +
Sbjct: 61 AVLKVEVYDWD-----RGGKDDLLGSAYIDLSDL 89
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-07
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 5 RLYVYVLQGQDLLAK------DSYVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRVH 54
L V VL+ ++ D YV++ + K +++ +KN+ NPVWNE F FR+
Sbjct: 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQ 59
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-07
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 18/107 (16%)
Query: 5 RLYVYVLQGQDLLAKD------SYVKVQI---GK--HKSKSRILKNNSNPVWNEEFVFRV 53
R+ V +++ ++L A D YVKV + K K K+ I K NPV+NE F+F +
Sbjct: 16 RITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNI 75
Query: 54 --HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNH 98
+ + L+++V + S +L+G++ + S E H
Sbjct: 76 PLERLRETTLIITVMDKDRL-----SRNDLIGKIYLGWKSGGLELKH 117
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-07
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 17 LAKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEF-VFRVHNIDDEELVVSVFQHNDDSGL 74
+ D Y V + + +++R+++N+ NPVWNE F ++ H + +V D+ +
Sbjct: 56 ITSDPYATVDLAGARVARTRVIENSENPVWNESFHIYCAHYASH--VEFTV----KDNDV 109
Query: 75 FGSSGELMGRVRVPVSSIAA 94
G+ +L+GR +PV + +
Sbjct: 110 VGA--QLIGRAYIPVEDLLS 127
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 4e-07
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFT-CNGKTRTSSVQLQTCDPQWHDILEFDAME 593
G+ L V ++ LA++++ G SDP+ V N + +T ++ +T +P+W+ I F ++
Sbjct: 1 GF-LQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIY-KTLNPEWNKIFTF-PIK 57
Query: 594 EPPSVLDVEVFDFDG 608
+ VL+V V+D D
Sbjct: 58 DIHDVLEVTVYDEDK 72
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-07
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
Query: 5 RLYVYVLQGQDLLAK--DSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELV 62
LYV V++ + L A D V+V++G +K ++ ++ SNP WN+ F F + L
Sbjct: 1 YLYVRVVKARGLPANSNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLE 60
Query: 63 VSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAED--NHMLPPTWFSLE 108
VSV + D + +G V +S + + L P W+ LE
Sbjct: 61 VSV--WDKDKA----KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLE 102
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 7e-07
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 19/117 (16%)
Query: 5 RLYVYVLQGQDLLAK------DSYVKVQI--GKHKS---KSRILKNNSNPVWNE--EFVF 51
+L V V + ++L D YV++ + K KS K+ + K+N NPV++E EF
Sbjct: 17 KLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPV 76
Query: 52 RVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108
+ + L V+V + +L+G+V + +S + D W+ L
Sbjct: 77 SLEELKRRTLDVAV---KNSKSFLSREKKLLGQVLIDLSDL---DLSKGFTQWYDLT 127
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 9e-07
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 17/102 (16%)
Query: 3 STRLYVYVLQGQDLLAK------DSYVKV---QIGKHKSKSRILKNNSNPVWNEEFVFRV 53
+ L + +L+ +L AK D +VK+ KHK ++++ + N NP WNE F+F
Sbjct: 15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEG 74
Query: 54 HNID---DEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSI 92
+ L + V D F S + +G V +P++ +
Sbjct: 75 FPYEKLQQRVLYLQVL----DYDRF-SRNDPIGEVSLPLNKV 111
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-06
Identities = 28/132 (21%), Positives = 59/132 (44%), Gaps = 14/132 (10%)
Query: 6 LYVYVLQGQDLLAKD--------SYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNID 57
L V+V++ +DL AKD Y + +G + K++ + N NP WN F + +
Sbjct: 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ 62
Query: 58 DEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTN 117
++ L + ++ + +G + +G + + + A+ W +L++ + K +
Sbjct: 63 NQLLKLILWDKDRFAG-----KDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSV 117
Query: 118 KDCGKILLTISL 129
G+I L S
Sbjct: 118 VS-GEIHLQFSW 128
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 2e-06
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 27/128 (21%)
Query: 5 RLYVYVLQGQDL-------LAKDSYVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFR 52
+L V V + ++L L+ D YVK+++ + K K++ +K NPVWNE F F
Sbjct: 14 KLTVEVREAKNLIPMDPNGLS-DPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFD 72
Query: 53 VHNID-DEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPT--WFSLET 109
+ D D L + V+ D + + MG + VS + + P W+ L
Sbjct: 73 LKPADKDRRLSIEVW----DWDRT-TRNDFMGSLSFGVSEL------IKMPVDGWYKLLN 121
Query: 110 PKTRKFTN 117
+ ++ N
Sbjct: 122 QEEGEYYN 129
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 20 DSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS-S 78
D+Y + G ++R ++++SNP WNE++ + V++ L V VF ++
Sbjct: 25 DAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSHWKEAVQP 83
Query: 79 GELMGRVRVPVSSI 92
L+G+VR+ +S++
Sbjct: 84 DVLIGKVRIRLSTL 97
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 20 DSYVKVQI---GKH--KSKSRILKNNSNPVWNEEFVFRV--HNIDDEELVVSVFQHNDDS 72
D YVK+ + GK K K+ I K NP +NE F F V I L+V+V + D
Sbjct: 37 DPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDY-DRI 95
Query: 73 GLFGSSGELMGRVRVPVSSIAAEDNH 98
G + +G+V + ++ AE H
Sbjct: 96 G----KNDPIGKVVLGCNATGAELRH 117
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 11 LQGQDLLAK-DSYVKVQIGKHKSKSRILKN-NSNPVWNEEFVFRVHNID---DEELVVSV 65
LQ D L K D YV +Q + KS++ K NP WNE+F F V D +L++ +
Sbjct: 13 LQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRI 72
Query: 66 FQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPT 103
+ S + +G + + + E P T
Sbjct: 73 MDKD-----NFSDDDFIGEATIHLKGLFEEGV--EPGT 103
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 2e-06
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 15/81 (18%)
Query: 20 DSYVKVQI------GKHKSKSRILKNNS-NPVWNEEFVFRVHNIDDEELVVSVFQ-HNDD 71
D YV+V+I K K++++KNN NPVWNE F F V EL F +++D
Sbjct: 26 DPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTV---PELAFLRFVVYDED 82
Query: 72 SGLFGSSGELMGRVRVPVSSI 92
SG + +G+ +P+ S+
Sbjct: 83 SG----DDDFLGQACLPLDSL 99
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 16/98 (16%)
Query: 6 LYVYVLQGQDLLAKDS------YVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRV--H 54
L V ++Q DL A D YVKV + K K ++++ + NPV+NE F F+V
Sbjct: 18 LTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYS 77
Query: 55 NIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSI 92
+ ++ LV SV+ + F S +L+G VRVP+ ++
Sbjct: 78 ELGNKTLVFSVYDFDR----F-SKHDLIGEVRVPLLTV 110
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 5e-06
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 27/120 (22%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRV 53
+L V VLQ +DL +D YVKV + K K +++ +K NP WN+ F +
Sbjct: 17 QLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYS- 75
Query: 54 HNIDDEELV-----VSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108
N+ E L V+V+ D G + + +G V + ++ A D+ P W+ L+
Sbjct: 76 -NVRRETLKERTLEVTVW----DYDRDGEN-DFLGEVVIDLAD-ALLDDE---PHWYPLQ 125
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 6e-06
Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 27/109 (24%)
Query: 6 LYVYVLQGQDLLAKD------SYVKVQIGKHKSKSRI-------LKNNSNPVWNEEFVFR 52
L V VL G DL KD YVK+ + I +K NP WNEEF FR
Sbjct: 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR 61
Query: 53 VHNIDDEELVVSVFQHN----DDSGLFGSSGELMGRVRVPVSSIAAEDN 97
V+ + L+ VF N DD +G+V VP++++ E
Sbjct: 62 VNPR-EHRLLFEVFDENRLTRDD---------FLGQVEVPLNNLPTETP 100
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 7e-06
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 18/96 (18%)
Query: 5 RLYVYVLQGQDLLAK------DSYVKVQI---GKH--KSKSRILKNNSNPVWNEEFVFRV 53
RL + +++ ++L A D YVKV + G+ K K+ + KN NP +NE VF V
Sbjct: 15 RLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDV 74
Query: 54 --HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRV 87
N+D+ L+++V + D G EL+G RV
Sbjct: 75 PPENVDNVSLIIAVVDY-DRVG----HNELIGVCRV 105
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|241371 cd13217, PH-GRAM1_TCB1D8_TCB1D9_family, TCB1D8 and TCB1D9 family Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1 | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 7e-06
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 699 PEEFLIKDFTCYLKRKMPLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDI 751
EE + Y K K+P QG L+LS + FY+ L G+++K W ++ DI
Sbjct: 1 EEELVTSYSCSYWKGKVPRQGWLYLSLNHLCFYSFLLGSESKLVIRWTELTDI 53
|
TBC1D8, TBC1D8B, TBC1D9 and TBC1D9B may act as a GTPase-activating proteins for Rab family protein(s). They all contain an N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the first repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 100 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-05
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 11 LQGQDLLAK--DSYVKVQIGKHKS--KSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVF 66
L+G D++ D YV I + ++++ K+ SNPVWNE V N E L ++V+
Sbjct: 14 LKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILV-NSLTEPLNLTVY 72
Query: 67 QHNDDSGLFGSSGELMGRVRVPVSSIAAEDNH 98
ND +L+G +SS+
Sbjct: 73 DFNDK-----RKDKLIGTAEFDLSSLLQNPEQ 99
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-05
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 8 VYVLQGQDLLAK------DSYVKVQIGKHK--SKSRILKNNSNPVWNEEFVFRVHNIDDE 59
VYV++ ++L K D Y+K+++GK K + + N NPV+ + F +
Sbjct: 4 VYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNS 63
Query: 60 ELVVSVFQHNDDSGLFGSSGELMGR 84
L +SV ++ S +L+G
Sbjct: 64 ILKISVMDYD-----LLGSDDLIGE 83
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 25/124 (20%), Positives = 55/124 (44%), Gaps = 23/124 (18%)
Query: 6 LYVYVLQGQDLLAKDS------YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRV- 53
L V +++ +L A D+ +VK+ + K K K+++ K NP +NEEF + +
Sbjct: 15 LIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIK 74
Query: 54 -HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKT 112
++ + L ++V+ + G S + +G +++ +++ H W
Sbjct: 75 HSDLAKKTLEITVWDKD-----IGKSNDYIGGLQLGINAKGERLRH-----WLDCLKNPD 124
Query: 113 RKFT 116
+K
Sbjct: 125 KKIE 128
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 29/117 (24%)
Query: 6 LYVYVLQGQDLLAK-----DSYVKVQIGKHK----SKSRILKNNSNPVWNEEFVFRVH-- 54
L V VL+ +DL K D + +V + ++++ K +NP ++E F F +
Sbjct: 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIG 60
Query: 55 -------------NIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNH 98
+++ EL V ++ S + G + +G VR+P+ + +H
Sbjct: 61 FSYEKKSFKVEEEDLEKSELRVELW---HASMVSGD--DFLGEVRIPLQGLQQAGSH 112
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 3e-05
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 17/74 (22%)
Query: 547 NLASSEMTGLSDPY--VVFTCNGK-TRTSSVQLQTCDPQWHDILEFDA----------ME 593
+L +++ +GLSDP+ V F + T +T P W L FD +
Sbjct: 12 DLLAADKSGLSDPFARVSFLNQSQETEVIK---ETLSPTWDQTLIFDEVELYGSPEEIAQ 68
Query: 594 EPPSVLDVEVFDFD 607
PP V+ VE+FD D
Sbjct: 69 NPPLVV-VELFDQD 81
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135 |
| >gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 3e-05
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 20/94 (21%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV--VFTCNG---KTRTSSVQLQTCDPQWHDILEFDAM 592
LT+ +++ NL + ++TG SDPYV C G K + +SV+ T +P +++ L FD
Sbjct: 16 LTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDV- 74
Query: 593 EEPPSVLD-----VEVFDFDGPFDQATSLGHAEI 621
PP +D + V D+D +GH E+
Sbjct: 75 --PPENVDNVSLIIAVVDYD-------RVGHNEL 99
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 24/102 (23%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI--GKHKS---KSRILKNNSNPVWNEEFVFRV 53
L+ +++ + L A D+ YVK+ + G K+ +++ + NP +NE +
Sbjct: 16 ALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTY-- 73
Query: 54 HNIDDEE-----LVVSVFQHNDDSGLFGSSGELMGRVRVPVS 90
+ I +E+ L + V ++D FG+ + +G R+P+
Sbjct: 74 YGITEEDIQRKTLRLLVL--DEDR--FGN--DFLGETRIPLK 109
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 4e-05
Identities = 30/137 (21%), Positives = 60/137 (43%), Gaps = 27/137 (19%)
Query: 7 YVY---VLQGQDLLAK------DSYVKV--QIGKHK-SKSRILKNNSNPVWNEEFVFRVH 54
+++ +++ ++L A D YV + GK + +K+R + + NP W+EEF V
Sbjct: 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVP 60
Query: 55 NIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRK 114
+ + +V+ + F +L GR + + D+ + W L+T
Sbjct: 61 AGEPLWISATVWDRS-----FVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLDTQ---- 111
Query: 115 FTNKDCGKILLTISLNG 131
G++LL +S+ G
Sbjct: 112 ------GRLLLRVSMEG 122
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 4e-05
Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKT-RTSSVQLQTCDPQWHDILEFDAMEEPP 596
LT+ L G NL SS+ G SDP+V N K+ + V +T +P W++ EF +E
Sbjct: 1042 LTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNE--EFT-IEVLN 1098
Query: 597 SVLDV---EVFDFDGPFDQAT-SLGHAEI--NFLKHTSTELADMWVSLEGKLAQSAQSKV 650
V DV V D+D + LG AEI + L+ T ++ + L+GK +
Sbjct: 1099 RVKDVLTINVNDWD--SGEKNDLLGTAEIDLSKLEPGGTTNSN--IPLDGKTFIVLDGTL 1154
Query: 651 HL 652
H
Sbjct: 1155 HP 1156
|
Length = 1227 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 4e-05
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 22 YVKVQI-GKHKSKSRI-LKNNSNPVWNEEFVFRV--HNIDDEELVVSV-FQHNDDSGLFG 76
Y V I HK + + +NP WNE F + + L +++
Sbjct: 24 YAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYC---ERPSL 80
Query: 77 SSGELMGRVRVPVSSIAA 94
+L+G VRVP+ +
Sbjct: 81 GD-KLIGEVRVPLKDLLD 97
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 5e-05
Identities = 33/128 (25%), Positives = 49/128 (38%), Gaps = 13/128 (10%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCN------GKTRTSSVQLQTCDPQWHDILEFD 590
+ T+ +V NL + GLSDPYV KTRT T +P+W + E +
Sbjct: 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIY---DTLNPRWDEEFELE 58
Query: 591 AMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKV 650
P + V+D + G A LK D + E L Q ++
Sbjct: 59 VPAGEPLWISATVWD-RSFVGKHDLCGRA---SLKLDPKRFGDDGLPREIWLDLDTQGRL 114
Query: 651 HLRIFLEN 658
LR+ +E
Sbjct: 115 LLRVSMEG 122
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 6e-05
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFT--CNG---KTRTSSVQLQTCDPQWHDILEFDAM 592
LTV +++ NL S+ GLSDPYV + G K + +SV+ T +P +++ FD
Sbjct: 16 LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVP 75
Query: 593 EE--PPSVLDVEVFDFDGPFDQATSLGHAEI 621
E L + V D D + +G +
Sbjct: 76 AEQLEEVSLVITVVDKDS-VGRNEVIGQVVL 105
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 6e-05
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 20 DSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFR 52
D YV+V K K+ + KN+ NP WNE+ VF
Sbjct: 36 DPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFP 68
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 7e-05
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 20 DSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI--DDEELVVSVFQHN 69
D KV K K+R+L+N NPVWNE F + + DE L + V +
Sbjct: 16 DRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYE 67
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 8e-05
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 21/109 (19%)
Query: 5 RLYVYVLQGQDLL------AKDSYVKVQ------IGKHKSKSRILKNNSNPVWNEEFVFR 52
RL V +++ + LL D +VK+Q + K K K+ ++ +P +NE F F+
Sbjct: 15 RLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTK-KTSCMRGTIDPFYNESFSFK 73
Query: 53 V--HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRV-PVSSIAAEDNH 98
V +++ LV +V+ HN SS + +GR+ + SS +E NH
Sbjct: 74 VPQEELENVSLVFTVYGHN-----VKSSNDFIGRIVIGQYSSGPSETNH 117
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 9e-05
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 22/127 (17%)
Query: 6 LYVYVLQGQDL-----LAK-DSYVKVQIGKHKSKSR-ILKNNSNPVWNEEFVFRVHNIDD 58
L V VL+ ++L L K D Y ++IG K++ + +P W+EE F +
Sbjct: 3 LVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKK 62
Query: 59 EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNK 118
L V+VF +DD +L+G V +S E W+ L +
Sbjct: 63 PILKVAVF--DDDK----RKPDLIGDTEVDLSPALKEGEF---DDWYEL------TLKGR 107
Query: 119 DCGKILL 125
G++ L
Sbjct: 108 YAGEVYL 114
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTC-----NGKTRTSSVQLQTCDPQWHDILEFDAM 592
L V ++ VNLA+ + G SDP+V + V+ +T +P++++ +D
Sbjct: 15 LIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIK 74
Query: 593 EE--PPSVLDVEVFDFD 607
L++ V+D D
Sbjct: 75 HSDLAKKTLEITVWDKD 91
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNG----KTRTSSVQLQTCDPQWHDILEFDAME 593
L+V ++E +LA G DP+ T N T+ + V+ +T +P++ + F+
Sbjct: 1 LSVRVLECRDLALKS-NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 17/117 (14%)
Query: 5 RLYVYVLQGQDLLAKD------SYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDD 58
RL +VL+ +DL KD +V+V ++ ++K + P WNE F F + D
Sbjct: 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGAD 60
Query: 59 EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPT-WFSLETPKTRK 114
L V V+ D L + + +G+V + ++ WF L P R
Sbjct: 61 SPLSVEVW----DWDLVSKN-DFLGKVVFSIQTLQQA----KQEEGWFRLL-PDPRA 107
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQL-QTCDPQWHDILEFDAMEEP 595
L V L+ L ++ G DPYV+ C + R S V +P+W++ +F E P
Sbjct: 2 TLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTV-EYP 60
Query: 596 PS---------VLDVEVFDFDGPFDQAT 614
++D + F D +AT
Sbjct: 61 GWGGDTKLILRIMDKDNFSDDDFIGEAT 88
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176053 cd08408, C2B_Synaptotagmin-14_16, C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 5 RLYVYVLQGQDL------LAKDSYVKV----QIGKHKSKSR--ILKNNSNPVWNEEFVFR 52
RL V V++G + A D+YVK+ G+ SKS+ I + +P + E FVF+
Sbjct: 16 RLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQ 75
Query: 53 VHNIDDEE--LVVSVF 66
V E L+ SV+
Sbjct: 76 VALFQLSEVTLMFSVY 91
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 138 |
| >gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 533 GDGWVLTVALVEGVNLASSEMTGLSDPYV---VFTCNGKTRTSSVQLQTCDPQW--HDIL 587
D +L V L++ NL + +G +DPY + T+ S + +T +P++ +
Sbjct: 13 KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVF 72
Query: 588 EFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639
E E P L+V ++DFD F + +G E+ + +E D+W ++
Sbjct: 73 EVPPQELPKRTLEVLLYDFDQ-FSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 31 KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVS 90
K +S KN SNP W+E F+F + + +EL+ V+ + S + +G VP
Sbjct: 32 KYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGK-----KSDSKFLGLAIVPFD 85
Query: 91 SIAA--EDNHMLP 101
+ + P
Sbjct: 86 ELRKNPSGRQIFP 98
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 25/108 (23%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV-VF-----TCNGKTRTSSVQLQTCDPQWHDILEF-- 589
L V +++ +L + L +PYV V+ + K RT +V+ +T +P+W+ E+
Sbjct: 18 LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVK-KTLNPEWNQTFEYSN 76
Query: 590 ----DAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELAD 633
E L+V V+D+D E +FL +LAD
Sbjct: 77 VRRETLKE---RTLEVTVWDYD---------RDGENDFLGEVVIDLAD 112
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 558 DPYVVFTCNGKTRTSSVQL---QTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614
DPY V G T+ + Q P+W + L F+ E+ +L V VFD D +
Sbjct: 23 DPYCVLRIGGVTKKTKTDFRGGQH--PEWDEELRFEITEDKKPILKVAVFDDD--KRKPD 78
Query: 615 SLGHAEINFLKHTSTELADMWVSL 638
+G E++ D W L
Sbjct: 79 LIGDTEVDLSPALKEGEFDDWYEL 102
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Query: 20 DSYVKVQI---GKHKSKSRILKNNSNPVWNEEFVF 51
D YVK+Q+ +HK K+R+L+ NPV++E F F
Sbjct: 39 DPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTF 73
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 24/124 (19%)
Query: 11 LQGQDL-LAKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHN 69
L QD D YV ++ +S + K+ +P ++ + +F + + V+ N
Sbjct: 15 LSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSN 73
Query: 70 ---DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLT 126
D E +G+ + ++ LP RK G++ T
Sbjct: 74 LLCD---------EFLGQATLSADPNDSQTLRTLP----------LRKRGRDAAGEVPGT 114
Query: 127 ISLN 130
IS+
Sbjct: 115 ISVK 118
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQW 583
V V + L+ + G +DPYV+ C G++ S VQ T P++
Sbjct: 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEF 50
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 5e-04
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 5 RLYVYVLQGQDLL-----AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVF 51
L V VL+ L + D YVKV G + ++ ++ NN+NP WN F F
Sbjct: 29 TLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDF 80
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127 |
| >gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 6e-04
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 12/96 (12%)
Query: 6 LYVYVLQGQDLLAK------DSYVKVQI--GKHKSK-SRILKNNSNPVWNEEFVFRVHNI 56
L V ++Q ++L + D Y KV++ + +K S+I K NP ++E FVF V
Sbjct: 18 LNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQ 77
Query: 57 DDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSI 92
+ + + V ++ D S E +G V +P++ +
Sbjct: 78 ELPKRTLEVLLYDFDQ---FSRDECIGVVELPLAEV 110
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176067 cd08685, C2_RGS-like, C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 6e-04
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 14/85 (16%)
Query: 6 LYVYVLQGQDLLAK-----DSYVKVQIGKHKS-----KSRILKNNSNPVWNEEFVFRVHN 55
L ++VL+ + L + +SYVK+ + K K+ + +++NP+++E F F V+
Sbjct: 14 LTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNE 73
Query: 56 IDDEE-LVVSVFQHN---DDSGLFG 76
D ++ L+V+V+ DSGL G
Sbjct: 74 RDYQKRLLVTVWNKLSKSRDSGLLG 98
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 119 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 8e-04
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 6 LYVYVLQGQDLLAKDS------YVKVQI-GKHKSKSRILKNNSNPVWNEEFVFRVHNIDD 58
L + + G++L + D +VK+ + K K++++K NPVWNEEF V N
Sbjct: 1042 LTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVK 1101
Query: 59 EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSI 92
+ L ++V + G +L+G + +S +
Sbjct: 1102 DVLTINVNDWD-----SGEKNDLLGTAEIDLSKL 1130
|
Length = 1227 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.001
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 530 KAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEF 589
+A G G ++ V +VEG +L G SDPY + + + V T +P+W+ ++F
Sbjct: 10 RASGIGRLM-VVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQF 68
Query: 590 DAMEEPPSVLDVEVFDFDGPFDQATSLGHAEI 621
+ VL + VFD D F LG EI
Sbjct: 69 FVKDLEQDVLCITVFDRD-FFSPDDFLGRTEI 99
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|241503 cd13349, PH-GRAM1_TBC1D8, TBC1 domain family member 8 (TBC1D8; also called Vascular Rab-GAP/TBC-containing protein) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1 | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.001
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 691 FQKLFALPPEEFLIKDFTCYL-KRKMPLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIE 749
F+ F P E L+ ++C K ++P QG L+LS + FY+ G + K W +++
Sbjct: 15 FEARFNFPEAEKLVTYYSCCCWKGRVPRQGWLYLSINHLCFYSFFLGKELKLVIPWVEVQ 74
Query: 750 DIQILSPSLATV 761
++ S T
Sbjct: 75 KLERTSNVFMTD 86
|
TBC1D8 may act as a GTPase-activating protein for Rab family protein(s). TBC1D8 contains an N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the first repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 135 |
| >gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.001
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 14/105 (13%)
Query: 5 RLYVYVLQGQDL------LAKDSYVKVQIGKH-----KSKSRILKNNSNPVWNEEFVFRV 53
RL V VL+ + L D YVKV + K K+ + K NPV+NE FVF +
Sbjct: 16 RLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDI 75
Query: 54 HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNH 98
+ + E++ V + D + E++GR+ + + + +H
Sbjct: 76 PSEELEDISVEFLVLDSDR---VTKNEVIGRLVLGPKASGSGGHH 117
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 543 VEGVNLASSEMTGLSDPYVVFTCNGKT---RTSSVQLQTCDPQWHDILEFDA---MEEPP 596
V NL + G SDPY+ K R + + T +P + + E +A
Sbjct: 7 VRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIP-NTLNPVFGKMFELEATLPGN--- 62
Query: 597 SVLDVEVFDFD 607
S+L + V D+D
Sbjct: 63 SILKISVMDYD 73
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 20 DSYVKVQIGKHKSKSRILKNNSNPVWN-EEFVFRVHNIDDEEL 61
D++V+V+ G K+ ++K + NPVWN E F F V DDEEL
Sbjct: 22 DAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEV---DDEEL 61
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 20 DSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78
D YV+V + K ++ + N NPVW+E V + ++++ + V +
Sbjct: 23 DPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTS-PNQKITLEVMDYE-------KV 74
Query: 79 GE--LMGRVRVPVSSIAAEDN 97
G+ +G V + VS + ++
Sbjct: 75 GKDRSLGSVEINVSDLIKKNE 95
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 20 DSYVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRV---HNIDDEELVVSVFQHNDDSG 73
D YV GK +RI++ + NPVW E + V E L ++ DS
Sbjct: 24 DPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLW----DSD 79
Query: 74 LFGSSGELMGRVRVPVSSIAAEDNHM 99
F ++ + +GRV + + + + N M
Sbjct: 80 RF-TADDRLGRVEIDLKELIEDRNWM 104
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111 |
| >gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 18/109 (16%)
Query: 558 DPYVVF----TCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 613
DPYV T GKT T +T P W++ EF L++ VF D
Sbjct: 36 DPYVSIDVDDTHIGKTSTKP---KTNSPVWNE--EFTTEVHNGRNLELTVF-HDAAIGPD 89
Query: 614 TSLGHAEINF--LKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNN 660
+ + I+F L + D+WV LE Q K+H++I L+ +
Sbjct: 90 DFVANCTISFEDLIQRGSGSFDLWVDLE------PQGKLHVKIELKGSA 132
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132 |
| >gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 11/54 (20%)
Query: 20 DSYVKVQ-----IGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQH 68
D YV + IGK +K + PVWNEEF VHN L ++VF
Sbjct: 36 DPYVSIDVDDTHIGKTSTKPKTNS----PVWNEEFTTEVHN--GRNLELTVFHD 83
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132 |
| >gnl|CDD|176054 cd08409, C2B_Synaptotagmin-15, C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 17/95 (17%)
Query: 5 RLYVYVLQG-----QDLLAKDSYVKV--QIGKHKSKSR---ILKNNSNPVWNEEFVFRV- 53
RL V VL+ D YVKV I K++ ++ ++P +NE F F+V
Sbjct: 16 RLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVT 75
Query: 54 -HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRV 87
+D L +SV Q +L+GRV +
Sbjct: 76 SRQLDTASLSLSVMQSGG-----VRKSKLLGRVVL 105
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 137 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.003
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 20 DSYVKVQI-GKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78
D Y+ V + K+R+ KN NPVWNE F +++ D L +S++ N S
Sbjct: 460 DPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTD-PLNLSLYDFNS-----FKS 513
Query: 79 GELMGRVRVPVSSIAAEDNHM 99
+++G ++ ++ +
Sbjct: 514 DKVVGSTQLDLALLHQNPVKK 534
|
Length = 1227 |
| >gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 13/67 (19%)
Query: 6 LYVYVLQGQDLLAK------DSYVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRVH 54
L+V+V + ++L A DS+VK + K K K+ ++K + NPVWN FV+
Sbjct: 29 LHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYD-- 86
Query: 55 NIDDEEL 61
+ E+L
Sbjct: 87 GVSPEDL 93
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.004
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV--VFTCNGK---TRTSSVQLQTCDPQWHDILEFD-A 591
LTV ++E NL ++ GLSDPYV NGK + ++++ +T +P +++ F+
Sbjct: 17 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVP 76
Query: 592 MEEPPSV-LDVEVFDFD 607
E+ V L V V D+D
Sbjct: 77 FEQIQKVHLIVTVLDYD 93
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.004
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 17/84 (20%)
Query: 3 STRLYVYVLQGQDLLAKDS------YVKVQI-------GKHKSKSRILKNNSNPVWNEEF 49
L V +L ++LL DS +VKV++ K+++ K P+++E F
Sbjct: 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESF 74
Query: 50 VFRV----HNIDDEELVVSVFQHN 69
F V +++ L+ +V ++
Sbjct: 75 EFNVPPEQCSVEGALLLFTVKDYD 98
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1024 | |||
| KOG1032 | 590 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| KOG1032 | 590 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.88 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.86 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.85 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.84 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.82 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.82 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.82 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.82 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.82 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.81 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.8 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.8 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.79 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.79 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.79 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.79 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.79 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.79 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.78 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.78 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.77 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.76 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.76 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.76 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.76 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.75 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.75 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.75 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.75 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.75 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.75 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.75 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.74 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.74 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.74 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.74 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.74 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.73 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.72 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.72 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.72 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.72 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.72 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.72 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.72 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.72 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.71 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.71 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.71 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.71 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.71 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.7 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.7 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.7 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.7 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.7 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.7 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.69 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.69 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.69 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.69 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.69 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.69 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.68 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.68 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.68 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.67 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.67 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.67 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.67 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.67 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.67 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.67 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.67 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.66 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.66 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.66 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.66 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.66 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.66 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.66 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.65 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.65 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.65 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.65 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.65 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.65 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.65 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.65 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.65 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.65 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.65 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.64 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.64 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.64 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.63 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.63 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.63 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.63 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.62 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.62 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.62 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.62 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.61 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.61 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.61 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.61 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.6 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.6 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.6 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.6 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.6 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.6 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.6 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.6 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.59 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.59 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.59 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.59 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.58 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.58 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.58 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.58 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.57 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.57 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.57 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.56 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.56 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.56 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.56 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.56 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.55 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.55 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.55 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.54 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.54 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.54 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.54 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.54 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.53 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.53 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.53 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.53 | |
| PLN03008 | 868 | Phospholipase D delta | 99.52 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.51 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.51 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.51 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.51 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.51 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.51 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.51 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.5 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.5 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.5 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.49 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.49 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.49 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.48 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.48 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.48 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.48 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.48 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.47 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.47 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.47 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.47 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.46 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.46 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.46 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.45 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.45 | |
| PF02893 | 69 | GRAM: GRAM domain; InterPro: IPR004182 The GRAM do | 99.45 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.43 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.43 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.43 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.42 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.42 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.42 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.41 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.41 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.41 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.4 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.4 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.4 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.39 | |
| PLN03008 | 868 | Phospholipase D delta | 99.39 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.38 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.38 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.37 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.37 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.36 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.34 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.32 | |
| smart00568 | 61 | GRAM domain in glucosyltransferases, myotubularins | 99.3 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.27 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.26 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.24 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.24 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.22 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.18 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.16 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.14 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.14 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.14 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 99.09 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.08 | |
| PLN02270 | 808 | phospholipase D alpha | 99.02 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 99.02 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 99.01 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 98.96 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.95 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 98.94 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 98.94 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.91 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.9 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.87 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.87 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 98.85 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.84 | |
| PLN02270 | 808 | phospholipase D alpha | 98.82 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.77 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.76 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.72 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.72 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 98.7 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.66 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.65 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.58 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.55 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.37 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.36 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.18 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 98.06 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.04 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.03 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.79 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 97.7 | |
| KOG4347 | 671 | consensus GTPase-activating protein VRP [General f | 97.54 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 97.32 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.19 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 97.16 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.09 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 96.96 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 96.95 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 96.8 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 96.68 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 96.56 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 96.27 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 96.13 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 95.94 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 95.93 | |
| PF10698 | 159 | DUF2505: Protein of unknown function (DUF2505); In | 95.93 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 95.91 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 95.29 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 95.22 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 95.13 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 94.98 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 94.93 | |
| PF14470 | 96 | bPH_3: Bacterial PH domain | 94.79 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 94.61 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 94.06 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 93.99 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 93.88 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 93.46 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 93.41 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 93.32 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 92.77 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 92.41 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 92.09 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 91.81 | |
| PF14844 | 106 | PH_BEACH: PH domain associated with Beige/BEACH; P | 91.7 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 89.11 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 88.85 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 88.39 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 88.17 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 88.07 | |
| cd05018 | 144 | CoxG Carbon monoxide dehydrogenase subunit G (CoxG | 87.78 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 87.21 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 86.53 | |
| PF10698 | 159 | DUF2505: Protein of unknown function (DUF2505); In | 84.33 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 83.4 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 82.68 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 82.25 | |
| cd08876 | 195 | START_1 Uncharacterized subgroup of the steroidoge | 81.96 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 80.67 |
| >KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=313.77 Aligned_cols=290 Identities=20% Similarity=0.298 Sum_probs=214.2
Q ss_pred CCCccccccceeeeeecccccccceeeeecEEEEEeccCCCeEEEEEecccceeeEeccccccccCCCcEEEEEeccCCc
Q 001703 697 LPPEEFLIKDFTCYLKRKMPLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGRGL 776 (1024)
Q Consensus 697 l~~~e~l~~~~~c~~~~~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~di~~i~k~~~~~~~~~~~~i~i~~~~~~~~ 776 (1024)
+|+++.|+.+|+|+++|.+++|||||++..||||||++|||.++.+|||.+|.-|+|+.+ +|+
T Consensus 117 ~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~~ikk~~t-----------------ag~ 179 (590)
T KOG1032|consen 117 VPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEITLIKKTKT-----------------AGI 179 (590)
T ss_pred CCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeeeeeeeehhhh-----------------ccC
Confidence 889999999999999999999999999999999999999999999999999999999883 467
Q ss_pred ccCCCccccCCCCceEEEEEeecChhHHHHHHHHHHHh---cCCChhhhhhhhcc-cccc--c----cccCccCC---CC
Q 001703 777 DARHGAKSQDEEGRLRFYFQSFVSFNDASRTIMALWRS---RTLTAYQKEQIAEE-QQVQ--E----EMSTAADR---GS 843 (1024)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~~~~~~---~~~~~~~~~~~~~~-~s~~--~----~~~~~~~~---~~ 843 (1024)
+||++.|++. ..+|+|+||++||.+|.+|..+-+. ...++......... +.+. + .....+.+ .+
T Consensus 180 fpn~i~i~t~---~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~s 256 (590)
T KOG1032|consen 180 FPNAIEITTG---TTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEVNDDQQGNVDNSQSPSALQNS 256 (590)
T ss_pred CCcceEEecC---CCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCcCcccccccccCCCccccccc
Confidence 8888888853 3599999999999999977554332 11111111000000 0000 0 00000000 11
Q ss_pred CCCCCC------------ccccccccccccCCHHhHhh-hccCChhHHHHHHHhCCcceeecccccCCCCceEEEEEEEE
Q 001703 844 VPNFED------------AKMSKVYNAELPISVKALME-MFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRF 910 (1024)
Q Consensus 844 ~~~~~~------------~~~~~~~~~~~~~~~~~~f~-lf~~~~~~~~~~~~~~~~~i~~~~W~~~~~~~~~R~~sy~~ 910 (1024)
+..+.+ ..+.-+.+..+.+++..+|+ +|++..|...+.+.++..+++..+|.....+...|+++|+.
T Consensus 257 ~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~~~~~~~~r~~~y~~ 336 (590)
T KOG1032|consen 257 FDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKGPRSGILLRTLSYTK 336 (590)
T ss_pred cCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccCCCccceeEeccCCc
Confidence 111111 01122335678899999999 89999999999999999999999999877789999999995
Q ss_pred --cccccCCCceecEEEEEeecCCCCcEEEEEEEecCCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEEecccchh
Q 001703 911 --NRHVSIFGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQ 988 (1024)
Q Consensus 911 --n~~~~~~~~~~~~~Q~~~~~~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~~~c~l~v~~~V~f~Kst~~K 988 (1024)
..++||+.+.+..+|.........++.|...+.+++||||++|.|++||+|+|.. .+.|+++++++|.|.|++|.+
T Consensus 337 ~l~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~~~~vps~~~f~v~~~y~i~~~~--~~~~~l~v~~~V~~~~~sw~~ 414 (590)
T KOG1032|consen 337 GLPAKSGPKSTDCEGTQTLHHQDLEKYFRVLSETLTPDVPSGDSFYVKTRYLISRAG--SNSCKLKVSTSVEWTKSSWDV 414 (590)
T ss_pred cCCCcCCCccccccceeeEEeccchhhhhhhheeccCCccccceeeeeEEEEEEecC--CcceeecceeEEEeccCchhh
Confidence 6677777667777775333233333555544444999999999999999999998 599999999999999999998
Q ss_pred hhhhhhhH--HhHHHHHHHHHH
Q 001703 989 QRITQNIT--EKFTHRLKEMIE 1008 (1024)
Q Consensus 989 ~~Ie~~~~--~g~~~~~~~~~~ 1008 (1024)
.+++.++. +.+-+.++.+++
T Consensus 415 ~~~~~~~~~~k~lv~~~~~~~~ 436 (590)
T KOG1032|consen 415 PVSEIGSNTLKDLVEILEKLLE 436 (590)
T ss_pred ccccccccchhhHHHHHHHHHh
Confidence 88888875 333334444443
|
|
| >KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.8e-26 Score=266.00 Aligned_cols=579 Identities=27% Similarity=0.325 Sum_probs=444.3
Q ss_pred cchhhhhcccceeeeeehhhHHHHheeeeeeeCCCccCCccccCCCCCCcceeEEeeeeEEeechhHHHHHHHHHhhccc
Q 001703 443 SDWELASEYFWNFTVVSAGFMILYVVVHILLCEPSKRQGLEFYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLR 522 (1024)
Q Consensus 443 ~~~~~~~~~f~~~~~~~~~~~~l~~~~~i~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (1024)
+.++...++|.++.++......+++-++.-++.+...++..+.++++|+..+.+.....++....+......++.++...
T Consensus 4 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~~~~~~n~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~k~~ 83 (590)
T KOG1032|consen 4 MQQKSESPKFAKVSVLLSSPLGISVDVAMNVEESAKIQGFPFLGLNLPDVSGSLFSSKVISSDLERSSDRVDSFASAKLH 83 (590)
T ss_pred ccccccccchhhhhcccccccccccceeccccccccccCcccccCCchhhcccccCCccccccccccccccccccccccC
Confidence 34555666777777777666667888888888888889999999999998888877766666655555555556666655
Q ss_pred cCCCCCccccCCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEE
Q 001703 523 KGSDHGVKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVE 602 (1024)
Q Consensus 523 ~~~d~~~~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~ 602 (1024)
++.+.+.+....++...+..+.+.++.....++.++||..+.+.+..+...+...+.+|.|++.++|+-...+-....|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vI 163 (590)
T KOG1032|consen 84 KGGLKGSPKTEKGYIGSSALLAGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVI 163 (590)
T ss_pred CCCCCcccccCccccchhhhhcchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEE
Confidence 66667777778888889999999999988888899999999999999999999999999999999999555555677788
Q ss_pred EEecCCCCCCCccceEEEEEcccccCCCccceEEEccccccccccceeEEEEEEeccCCchhhhhhhhhhhhcccee--e
Q 001703 603 VFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNGVETIKEYLTKMEKEVGKK--L 680 (1024)
Q Consensus 603 V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~~~~~~~~~~~~~l~~~eke~~~k--~ 680 (1024)
+++++..+.+-.-.|.+...+.-- .......|.+|.++.+..+.-+++++..+.....+.....++...+.+...+ -
T Consensus 164 pf~eI~~ikk~~tag~fpn~i~i~-t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~~~~~~~ 242 (590)
T KOG1032|consen 164 PFDEITLIKKTKTAGIFPNAIEIT-TGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEVNDDQQG 242 (590)
T ss_pred eeeeeeeeehhhhccCCCcceEEe-cCCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCcCccccc
Confidence 888887556666677666665544 5566788999998877776667888888888888888888888888877766 3
Q ss_pred cccCCCCcccccccccCCCccccccceeeeeecccccccceeeeecEEEEEeccCCCeEEEEEecccceeeEeccccccc
Q 001703 681 NLRSPHRNSTFQKLFALPPEEFLIKDFTCYLKRKMPLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLAT 760 (1024)
Q Consensus 681 ~~~s~~k~~~f~~~f~l~~~e~l~~~~~c~~~~~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~di~~i~k~~~~~~~ 760 (1024)
....+.....+...|++|.+|.+..+++|.+.+..+++|+++++....||++.+||..+++...|+|+..++........
T Consensus 243 ~~~~~~~~s~~~~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~ 322 (590)
T KOG1032|consen 243 NVDNSQSPSALQNSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKG 322 (590)
T ss_pred ccccCCCccccccccCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccC
Confidence 55677888999999999999999999999999999999999999999999999999999999999999999988765533
Q ss_pred cCCCcEEEEEeccCCcccCCCccccCCCCceEEEEEeecC-hhHHHHHHHHHHHhcCCChhhhhhhhcccccccccc-Cc
Q 001703 761 VGSPSLVIILWKGRGLDARHGAKSQDEEGRLRFYFQSFVS-FNDASRTIMALWRSRTLTAYQKEQIAEEQQVQEEMS-TA 838 (1024)
Q Consensus 761 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~-rd~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~~ 838 (1024)
...+-.......+.++.+.++.++++..+...++|..+.. ..-...+++..|............+..........+ ..
T Consensus 323 ~~~~~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~~~~vps~~~f~v~~~y~i~~~~~~~~~l~v~ 402 (590)
T KOG1032|consen 323 PRSGILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKYFRVLSETLTPDVPSGDSFYVKTRYLISRAGSNSCKLKVS 402 (590)
T ss_pred CCccceeEeccCCccCCCcCCCccccccceeeEEeccchhhhhhhheeccCCccccceeeeeEEEEEEecCCcceeecce
Confidence 3323355566778899999999999999988888887766 333333333333332211111111111110000000 00
Q ss_pred cCCCCCCCCCCccccccccccccCCHHhHhhhccCChhHHHHHHHhCCcceeecccccCCCCceEEEEEEEE--cccccC
Q 001703 839 ADRGSVPNFEDAKMSKVYNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRF--NRHVSI 916 (1024)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lf~~~~~~~~~~~~~~~~~i~~~~W~~~~~~~~~R~~sy~~--n~~~~~ 916 (1024)
....-.....+..+.++.....++.++.+.++|.+.+-...-+++.++..+.-++|+...++..+|..+|+- ++++++
T Consensus 403 ~~V~~~~~sw~~~~~~~~~~~~k~lv~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~i~~ 482 (590)
T KOG1032|consen 403 TSVEWTKSSWDVPVSEIGSNTLKDLVEILEKLLENGEELAKNQEKEDELTYEGSPWEVEKPGGTVRQLSYKEVWNKPISP 482 (590)
T ss_pred eEEEeccCchhhccccccccchhhHHHHHHHHHhccHHHHHhhcccccccccCCCccccCCCceeeeecccccccccccc
Confidence 000000112234455555545566677777788888877888888888888888999777899999999997 889999
Q ss_pred CCceecEEEEEeecCCCCcEEEEEEEecCCCCCCCceEEEEEEE-EEecCCCCCccEEEEEEEEEEecccchhhhhhhhh
Q 001703 917 FGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDHFRVHFRYE-IEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNI 995 (1024)
Q Consensus 917 ~~~~~~~~Q~~~~~~~~~~~vv~~~~~~~dVPygd~F~v~~r~~-i~~~~~~~~~c~l~v~~~V~f~Kst~~K~~Ie~~~ 995 (1024)
....++..|+.........|+++++..+++||||++|.|+.||. +.........+.+.++..|.|+|...++-..-+..
T Consensus 483 ~~~~~~~~~i~~l~~~~~~~l~~~i~~l~~~~~g~~~~~h~r~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~k~~ 562 (590)
T KOG1032|consen 483 DKREVTLLQVVVLVPLKILWLLNTILFLHDVPFGSYFEVHERYREALDETSKVKTTLVWVSFRIEWLKDIKMEARKIKQI 562 (590)
T ss_pred ccccceeEEEEEEehhhhhHHHHHHhhccCCCCccceeeehhhhhhhcccchhhhhhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 98999999998887777888999999999999999999999994 32223334677888888999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHhhcccCCC
Q 001703 996 TEKFTHRLKEMIELVEREILFATQQDA 1022 (1024)
Q Consensus 996 ~~g~~~~~~~~~~~~~~~i~~~~~~~~ 1022 (1024)
+...++..+.++.++++.-..+++.++
T Consensus 563 ~r~~~~~l~~~~~~l~~~~~~~~~~d~ 589 (590)
T KOG1032|consen 563 LRNDQDLLEVLFSLLEKLSQSNSQLDQ 589 (590)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 999999999999999999888877654
|
|
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.1e-22 Score=187.03 Aligned_cols=118 Identities=18% Similarity=0.299 Sum_probs=105.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccC-CCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCc
Q 001703 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQ-TCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~-t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd 614 (1024)
|+|.|+|++|++++..+ .|++||||+|++++++++|+++.+ ++||+|||+|.|.+. +....|.|+|||+|. +++|+
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~-~~~~~l~~~V~d~d~-~~~dd 78 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLP-EGVDSIYIEIFDERA-FTMDE 78 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEec-CCCcEEEEEEEeCCC-CcCCc
Confidence 69999999999998877 899999999999999999999865 899999999999964 345689999999999 89999
Q ss_pred cceEEEEEcc-cccCCCccceEEEccccccccccceeEEEEEE
Q 001703 615 SLGHAEINFL-KHTSTELADMWVSLEGKLAQSAQSKVHLRIFL 656 (1024)
Q Consensus 615 ~lG~~~i~l~-~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~ 656 (1024)
+||++.|+|. .+..++..+.|++|.++.+....|+|||.+.+
T Consensus 79 ~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 79 RIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred eEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 9999999996 57777778999999987777788999999863
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-21 Score=222.83 Aligned_cols=167 Identities=26% Similarity=0.369 Sum_probs=146.2
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC---eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEecCCC
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDD 71 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~---~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~d~~ 71 (1024)
...|.|+|++|++|+ .+||||++++.. .+.+|++.++++||+|||+|.|.|+ +.....|.+.|||.|
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~d-- 243 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFD-- 243 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecC--
Confidence 467999999999999 589999999964 5699999999999999999999977 578899999999999
Q ss_pred CCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEecCCeeeEEEEEeeccCCCCC
Q 001703 72 SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKGHNLSSNRLLYLHSNVSSN 151 (1024)
Q Consensus 72 ~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~~~l~v~v~~~~~~~L~~~ 151 (1024)
+| +++++||++.++|..+.... ....|++|....... ....|+|+++++|.+.+++|+|.|++| +||+.+
T Consensus 244 -rf--sr~~~iGev~~~l~~~~~~~---~~~~w~~l~~~~~~~--~~~~gel~~sL~Y~p~~g~ltv~v~ka--r~L~~~ 313 (421)
T KOG1028|consen 244 -RF--SRHDFIGEVILPLGEVDLLS---TTLFWKDLQPSSTDS--EELAGELLLSLCYLPTAGRLTVVVIKA--RNLKSM 313 (421)
T ss_pred -Cc--ccccEEEEEEecCccccccc---cceeeeccccccCCc--ccccceEEEEEEeecCCCeEEEEEEEe--cCCCcc
Confidence 74 79999999999999988753 267799998433322 223389999999999999999999998 999999
Q ss_pred CCCCCCCCeEEEEecCCCCCCccccccccc
Q 001703 152 ESKELEDPCVLSHDVSCSKAPCLDVTEGNH 181 (1024)
Q Consensus 152 ~~~g~sdp~vkv~l~~~~~~~~~~~~~~~~ 181 (1024)
+..+.+|||||++++.+.++..+++|..++
T Consensus 314 ~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~ 343 (421)
T KOG1028|consen 314 DVGGLSDPYVKVTLLDGDKRLSKKKTSVKK 343 (421)
T ss_pred cCCCCCCccEEEEEecCCceeeeeeeeccc
Confidence 999999999999999999888888877665
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-19 Score=214.70 Aligned_cols=122 Identities=28% Similarity=0.415 Sum_probs=108.7
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCE-EEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCC
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQ 612 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~ 612 (1024)
+.|-|+|.+..|.||+..|.+|.+||||++.++++ .++|+++++|+||+|||+|..++.......+.+.|+|||. -.+
T Consensus 1038 nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~-~~k 1116 (1227)
T COG5038 1038 NSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDS-GEK 1116 (1227)
T ss_pred ccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeeccc-CCC
Confidence 46899999999999999999999999999999876 7899999999999999999999887888899999999998 589
Q ss_pred CccceEEEEEcccccCCCccceEEEccccccccccceeEEEEEE
Q 001703 613 ATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFL 656 (1024)
Q Consensus 613 dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~ 656 (1024)
+|.||.+.++|..+..+.....-++|+++......|.++....+
T Consensus 1117 nd~lg~~~idL~~l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~ 1160 (1227)
T COG5038 1117 NDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNF 1160 (1227)
T ss_pred ccccccccccHhhcCcCCccceeeeccCcceEecccEeecceec
Confidence 99999999999999999888888999986533445666666554
|
|
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-20 Score=180.44 Aligned_cols=116 Identities=19% Similarity=0.346 Sum_probs=102.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeec-----CCCCeEEEEEEecCCCCCC
Q 001703 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAME-----EPPSVLDVEVFDFDGPFDQ 612 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~-----~~~~~L~v~V~D~d~~~~~ 612 (1024)
++|+|++|+||+.++..|.+||||+|.+++++++|+++++++||+|||+|.|.+.. .....|.|+|||+|. +++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~-~~~ 79 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL-LGL 79 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc-cCC
Confidence 47999999999999999999999999999999999999999999999999999754 246789999999998 899
Q ss_pred CccceEEEEEccccc--CCCccceEEEccccccc--cccceeEEEE
Q 001703 613 ATSLGHAEINFLKHT--STELADMWVSLEGKLAQ--SAQSKVHLRI 654 (1024)
Q Consensus 613 dd~lG~~~i~l~~l~--~~~~~~~w~~L~~~~~~--~~~g~l~l~~ 654 (1024)
|++||++.|+|.++. .+...+.||+|.++.+. ...|+|+|++
T Consensus 80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred CceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 999999999999987 56677899999874332 3479999886
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-19 Score=173.84 Aligned_cols=119 Identities=25% Similarity=0.389 Sum_probs=107.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-EEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCcc
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~ 615 (1024)
.|+|+|++|+||+..|..|.+||||++.+++ ..++|+++.+++||+|||.|.|.+ ......|.|+|||+|. +++|++
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v-~~~~~~l~~~v~D~d~-~~~~~~ 78 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPI-EDVTQPLYIKVFDYDR-GLTDDF 78 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEe-cCCCCeEEEEEEeCCC-CCCCcc
Confidence 3799999999999999999999999999987 678999999999999999999995 4456799999999999 789999
Q ss_pred ceEEEEEcccccCCCccceEEEccccccccccceeEEEEEEe
Q 001703 616 LGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLE 657 (1024)
Q Consensus 616 lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~~ 657 (1024)
||++.++|.++..+...+.|++|.++.+....|+|+|.+.+.
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~ 120 (121)
T cd04042 79 MGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLT 120 (121)
T ss_pred eEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEEC
Confidence 999999999999888899999998765555689999999875
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-19 Score=172.31 Aligned_cols=115 Identities=30% Similarity=0.501 Sum_probs=105.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCccc
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 616 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~l 616 (1024)
+|+|+|++|+||+..+..|.+||||++++++++.+|+++++|+||.|||+|.|.+.......|.|+|||+|. +++|++|
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~-~~~~~~i 79 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDT-GKKDEFI 79 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCC-CCCCCeE
Confidence 479999999999999999999999999999999999999999999999999999765557899999999998 7899999
Q ss_pred eEEEEEcccccCCCccceEEEccccccccccceeEEEEEEe
Q 001703 617 GHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLE 657 (1024)
Q Consensus 617 G~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~~ 657 (1024)
|++.++|.++..+...+.|++|++. .|+|++.+++.
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~~-----~G~~~~~~~~~ 115 (116)
T cd08376 80 GRCEIDLSALPREQTHSLELELEDG-----EGSLLLLLTLT 115 (116)
T ss_pred EEEEEeHHHCCCCCceEEEEEccCC-----CcEEEEEEEec
Confidence 9999999999998899999999862 59999998764
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-19 Score=173.82 Aligned_cols=114 Identities=18% Similarity=0.272 Sum_probs=100.2
Q ss_pred EEEEEEEEeeC---CCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCC--
Q 001703 537 VLTVALVEGVN---LASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFD-- 611 (1024)
Q Consensus 537 ~L~V~vi~a~~---L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~-- 611 (1024)
.|.|+|++|+| |+.+|..|++||||+|++++++.+|+++++++||+|||+|.|.+. .+...|.|+|||+|. ++
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~-~~~~~l~v~V~d~d~-~~~~ 78 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVY-DPCTVLTVGVFDNSQ-SHWK 78 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEec-CCCCEEEEEEEECCC-cccc
Confidence 37999999999 899999999999999999999999999999999999999999954 455699999999997 63
Q ss_pred ----CCccceEEEEEcccccCCCccceEEEccccc--cccccceeEE
Q 001703 612 ----QATSLGHAEINFLKHTSTELADMWVSLEGKL--AQSAQSKVHL 652 (1024)
Q Consensus 612 ----~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~--~~~~~g~l~l 652 (1024)
+|++||++.++|..+..+...+.||+|.... +....|+|++
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 8999999999999999998889999998632 2335677764
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-19 Score=179.69 Aligned_cols=125 Identities=24% Similarity=0.338 Sum_probs=108.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccC-CCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCcc
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQ-TCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~-t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~ 615 (1024)
.|+|+|++|+||+++|.+|.+||||++.++++..+|+++.+ ++||+|||.|+|.+.......|.|+|||++. +++|++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~-~~~dd~ 79 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVG-PNKDEP 79 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecC-CCCCCe
Confidence 37999999999999999999999999999999999999876 6999999999999755445799999999998 789999
Q ss_pred ceEEEEEcccccCC----CccceEEEcccccc-------ccccceeEEEEEEeccCCc
Q 001703 616 LGHAEINFLKHTST----ELADMWVSLEGKLA-------QSAQSKVHLRIFLENNNGV 662 (1024)
Q Consensus 616 lG~~~i~l~~l~~~----~~~~~w~~L~~~~~-------~~~~g~l~l~~~~~~~~~~ 662 (1024)
||++.|+|.++..+ ...+.||+|.+..+ ...+|+|+|++.+..+...
T Consensus 80 lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~ 137 (150)
T cd04019 80 LGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHV 137 (150)
T ss_pred EEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceE
Confidence 99999999998643 45689999987543 3457999999999866543
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.4e-22 Score=230.96 Aligned_cols=465 Identities=18% Similarity=0.198 Sum_probs=286.9
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEE-Ee--------cCCCCeEEEEEEec
Q 001703 4 TRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFR-VH--------NIDDEELVVSVFQH 68 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~-v~--------~~~~~~L~v~V~d~ 68 (1024)
-.|+++|++||.|. .+|||+.+.+.++.+.|.++.+|+||.|+++..|. +. ......+.++|||.
T Consensus 206 ~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~ 285 (1105)
T KOG1326|consen 206 SPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDL 285 (1105)
T ss_pred hhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehh
Confidence 35788999999998 79999999999999999999999999999999998 43 12236789999999
Q ss_pred CCCCCCCCCCCCeeEEEEE-eCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEecCCeeeEEEEEeeccC
Q 001703 69 NDDSGLFGSSGELMGRVRV-PVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKGHNLSSNRLLYLHSN 147 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i-~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~~~l~v~v~~~~~~~ 147 (1024)
| + .+.++|+|+... |...+. .+...|+++.+. +...|+++++........
T Consensus 286 d---r--~g~~ef~gr~~~~p~V~~~-----~p~lkw~p~~rg------~~l~gd~l~a~eliq~~~------------- 336 (1105)
T KOG1326|consen 286 D---R--SGINEFKGRKKQRPYVMVQ-----CPALKWVPTMRG------AFLDGDVLIAAELIQIGK------------- 336 (1105)
T ss_pred h---h--hchHHhhcccccceEEEec-----CCccceEEeecc------cccccchhHHHHHHhhcC-------------
Confidence 9 4 689999999877 333333 346789999833 356788888766544321
Q ss_pred CCCCCCCCCCCCe--EEEEecCCCCCCccccccccchhhhHHHHHHHhhccCCCCCCC-CCCCCCCCCCCCCCCC-CCCC
Q 001703 148 VSSNESKELEDPC--VLSHDVSCSKAPCLDVTEGNHLMKAMVSHLEKIFNKNDQGLKT-EDSSELSSTPSDYEDC-VEEH 223 (1024)
Q Consensus 148 L~~~~~~g~sdp~--vkv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~s~~~~~~~~~~e~~-~~~~ 223 (1024)
..+..+|- .-+++.+.+.+++.++++.+.++.-+-+.- +...++. ..+....++.+..... ..+-
T Consensus 337 -----~i~~p~~~~~~~~~~vp~~iRp~~q~~~~evl~wgLrn~k------~~~m~~~~~P~~~~e~g~e~v~s~~I~~~ 405 (1105)
T KOG1326|consen 337 -----PIPQPPPQREIIFSLVPKKIRPKTQIGKAELLMWGLRNPK------KSGMASTFSPALLVEFGGERVSSFSIFNR 405 (1105)
T ss_pred -----CCCCCCcccccceeccccCCCcceeeeeeehhhhhhcccc------cccccccCCcceeEeeCCceEeeeeehhh
Confidence 01122221 137889999999999999888765542211 1111111 1234445555555543 3566
Q ss_pred CCCCcHHHHHHhhccCCCCCCC---CCCCCCcceeeeEEecChhhhcccccCCCchhHHH----HHHHhCccceeeCCCc
Q 001703 224 PPSHNFEEAIKMMQSRENEGDM---PENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKD----LAELQGTKDVQEGPWE 296 (1024)
Q Consensus 224 ~~~~~~~e~~~~~~~~~~~~e~---p~~~~~~~~~d~~~~~~~~~l~~llf~~~s~f~~~----~~~~~~~~~~~~~pw~ 296 (1024)
..+++|..++..+.+..+.++. |.+. .++|. ++|.+. .+.+..+..+.|.||.
T Consensus 406 k~npnf~s~~~~~~v~lpd~e~Y~ppl~a---kvvd~-----------------~~fg~~~v~g~c~i~~l~nf~c~p~~ 465 (1105)
T KOG1326|consen 406 KKNPNFPSRVLGRLVILPDEELYMPPLNA---KVVDL-----------------RQFGRMEVVGQCKILSLYNFFCDPSA 465 (1105)
T ss_pred hhCCCCceeEEEEEEeccchHhhCcccee---EEEec-----------------ccccceeehhhhcchhhhhhccCchh
Confidence 7778888788888887776664 2222 23322 223322 4556666777788885
Q ss_pred cCCCCCCeeEEEEEEEeccCccceeeEEEEEEEEEeeCCCeEEEEEeeeCCCCCCCCeEEEEEEEEeecCCCCCCCCCce
Q 001703 297 WKSGEMTCLTRAVSYMKAATKLVKAVKATEQQTYLKANGQEFAILVTVSTPDVPYGNTFNVQLLYKIIPGPELSSGEDSS 376 (1024)
Q Consensus 297 ~~~~~~~~~~R~~~y~~~~~~~~k~~~~~e~~~~~~~~~~~~~v~~~~~tpdvp~g~~F~v~~~y~i~~~p~~~~~~~~~ 376 (1024)
...-. |-...- ...+.. ++.+ +-++..... +-|..+ ..+.+
T Consensus 466 ~~~~~------------Pq~~~d-----------------~~~~~~----~~~~--~~~~~~~~~---~l~~~~-~~~~~ 506 (1105)
T KOG1326|consen 466 VNSIT------------PQFASD-----------------PVSIMM----GSTD--NEIRHCNSS---TLPASP-HEDEE 506 (1105)
T ss_pred hcccC------------cCCCCC-----------------chhhhc----CCch--hhhhhcccc---CCCCCc-ccccc
Confidence 33222 211100 000000 0000 011111111 111111 12334
Q ss_pred eEEEEEEEEEeeeeceecccccchHhhHHHHHHHHHHHHHhhccccccCCcCchhhhccccccccccchhhhhcccceee
Q 001703 377 HLIISWGIDFHQSTMMRGMIEGGARQGLKESFEQFANLLAQNLKILDSKDASDKDHMLATLQTEQQSDWELASEYFWNFT 456 (1024)
Q Consensus 377 ~l~i~~~i~~~~s~~~k~~iek~~~~g~~~~~~~~~~~l~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 456 (1024)
...++||-+|+.++-.. ++-+.-+. -..-.+|.++.+ ++ .+..|.++.
T Consensus 507 e~~~~~w~k~~~~~~~~------~k~~~~~~------K~~~~LKiyn~e-----------le---------~v~ef~~l~ 554 (1105)
T KOG1326|consen 507 EREVDWWGKFYPSAEEN------AKWEVYEH------KINVTLKIYNME-----------LE---------MVAEFRGLQ 554 (1105)
T ss_pred ceehhhhhhcccccccc------cccccccc------ccceEEEEehhh-----------hh---------hHHHHhhhh
Confidence 45678888888876111 11111000 001144455443 22 345577777
Q ss_pred eeehhhHHHHheeeeeeeCCCccCCccccCC----CCCCcceeEEeeeeEEeechhHHHHHHHHHhhccccCCCCCcccc
Q 001703 457 VVSAGFMILYVVVHILLCEPSKRQGLEFYGL----DLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVKAQ 532 (1024)
Q Consensus 457 ~~~~~~~~l~~~~~i~~~~p~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 532 (1024)
+.+.+|. +|++..- ...+....-.+|+|+ ++|++.+... ..++|. .++.. .
T Consensus 555 D~~~~f~-l~rG~~~-~e~~e~~Ivg~fKgl~rIyp~~~~~~~p~--------------~pr~~~---~~~~~------~ 609 (1105)
T KOG1326|consen 555 DWAVTFK-LYRGKEG-LECLEQQIVGEFKGLFRIYPVPRNPSSPA--------------PPRHFL---DLPKE------E 609 (1105)
T ss_pred hccceeE-eeecccc-CCCcccchhhhhhcceeeecCCCccCCCC--------------Chhhhh---ccccc------C
Confidence 7777776 5665532 111111111256662 5554433332 222221 11110 1
Q ss_pred CCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEE--eeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCC
Q 001703 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTR--TSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPF 610 (1024)
Q Consensus 533 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~--kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~ 610 (1024)
....+++|.|++|.+|.+.|.+|.+|||+.|.+|++.. ++..+.+|+||++++.|++...-+....|.++|||+|. +
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~-~ 688 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDL-E 688 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeec-c
Confidence 23458899999999999999999999999999998874 66679999999999999999777778899999999999 8
Q ss_pred CCCccceEEEEEccc
Q 001703 611 DQATSLGHAEINFLK 625 (1024)
Q Consensus 611 ~~dd~lG~~~i~l~~ 625 (1024)
+.|+.+|+.+++|..
T Consensus 689 ~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 689 AQDEKIGETTIDLEN 703 (1105)
T ss_pred cccchhhceehhhhh
Confidence 999999999999985
|
|
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-19 Score=174.00 Aligned_cols=120 Identities=20% Similarity=0.360 Sum_probs=104.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCC---CCeEEEEEEecCCCCC-C
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEP---PSVLDVEVFDFDGPFD-Q 612 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~---~~~L~v~V~D~d~~~~-~ 612 (1024)
.|+|+|++|+||++.+..|.+||||++.+++++++|+++++++||+|||.|.|.+.... ...|.|+|||++. ++ +
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~-~~~~ 79 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR-SGRR 79 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC-CcCC
Confidence 37999999999999998999999999999999999999999999999999999964332 3589999999998 66 8
Q ss_pred CccceEEEEEccccc-CCCccceEEEccccc-cccccceeEEEEEEe
Q 001703 613 ATSLGHAEINFLKHT-STELADMWVSLEGKL-AQSAQSKVHLRIFLE 657 (1024)
Q Consensus 613 dd~lG~~~i~l~~l~-~~~~~~~w~~L~~~~-~~~~~g~l~l~~~~~ 657 (1024)
|++||++.+++..+. .+.....||+|+.++ ....+|+|+|+++++
T Consensus 80 d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 80 RSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 999999999999987 567788999998753 223589999999875
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-19 Score=171.18 Aligned_cols=117 Identities=25% Similarity=0.403 Sum_probs=103.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeeccc-CCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCc
Q 001703 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQL-QTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~-~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd 614 (1024)
|.|+|+|++|+||+..+..|.+||||++.+++++.+|+++. +++||+|||.|.|.+..+....|.|+|||++. .+ |+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~-~~-~~ 78 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDK-RK-PD 78 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCC-CC-Cc
Confidence 58999999999999999999999999999999999999875 58999999999999766566799999999998 55 99
Q ss_pred cceEEEEEcccccCCCccceEEEccccccccccceeEEEEEE
Q 001703 615 SLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFL 656 (1024)
Q Consensus 615 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~ 656 (1024)
+||++.+++.++..+...+.|++|..+. ...|+|+|++++
T Consensus 79 ~iG~~~~~l~~~~~~~~~~~w~~L~~~~--~~~G~i~l~l~f 118 (118)
T cd08681 79 LIGDTEVDLSPALKEGEFDDWYELTLKG--RYAGEVYLELTF 118 (118)
T ss_pred ceEEEEEecHHHhhcCCCCCcEEeccCC--cEeeEEEEEEEC
Confidence 9999999999987777789999998643 357899998864
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-19 Score=169.62 Aligned_cols=115 Identities=21% Similarity=0.355 Sum_probs=103.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCC
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 613 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~d 613 (1024)
.|+|+|++|+||+..+..|.+||||++.++ +.+++|+++++++||+|||+|.|.+.......|.|+|||+|. + +|
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~-~-~~ 78 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDY-V-MD 78 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCC-C-CC
Confidence 378999999999999988999999999996 467899999999999999999999755555689999999998 7 89
Q ss_pred ccceEEEEEcccccCCCccceEEEccccccccccceeEEEEEEe
Q 001703 614 TSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLE 657 (1024)
Q Consensus 614 d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~~ 657 (1024)
++||++.+++.++..+...+.|++|.++ +.|+|++++.++
T Consensus 79 ~~iG~~~~~l~~l~~g~~~~~~~~L~~~----~~g~l~~~~~~~ 118 (119)
T cd04036 79 DHLGTVLFDVSKLKLGEKVRVTFSLNPQ----GKEELEVEFLLE 118 (119)
T ss_pred cccEEEEEEHHHCCCCCcEEEEEECCCC----CCceEEEEEEee
Confidence 9999999999999999999999999863 478999998875
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.6e-19 Score=168.05 Aligned_cols=116 Identities=18% Similarity=0.233 Sum_probs=100.9
Q ss_pred EEEEEEEeeCCCCCC-CCCCCCcEEEEEECCE-EEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCcc
Q 001703 538 LTVALVEGVNLASSE-MTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d-~~g~~DPyv~v~~~~~-~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~ 615 (1024)
|.|+|++|+||++++ ..|.+||||.|.++++ ..+|+++++|+||+|||+|.|++. +....|.|.|||+|. +++|++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~-~~~~~l~~~v~d~~~-~~~~~~ 79 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIP-RTFRHLSFYIYDRDV-LRRDSV 79 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcC-CCCCEEEEEEEECCC-CCCCce
Confidence 689999999999974 4689999999999865 579999999999999999999954 445799999999998 899999
Q ss_pred ceEEEEEcccccCCCccceEEEcccc-ccccccceeEEEEE
Q 001703 616 LGHAEINFLKHTSTELADMWVSLEGK-LAQSAQSKVHLRIF 655 (1024)
Q Consensus 616 lG~~~i~l~~l~~~~~~~~w~~L~~~-~~~~~~g~l~l~~~ 655 (1024)
||++.++|+++..++..+.||+|++. .....+|+|||.+.
T Consensus 80 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd08401 80 IGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELR 120 (121)
T ss_pred EEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEE
Confidence 99999999999888888999999873 22235899999874
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.7e-19 Score=166.02 Aligned_cols=113 Identities=19% Similarity=0.350 Sum_probs=96.3
Q ss_pred cEEEEEEEEeecCC-----CCCcEEEEEECCeEEeeecccC-CCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCC
Q 001703 4 TRLYVYVLQGQDLL-----AKDSYVKVQIGKHKSKSRILKN-NSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~-----~~DPyv~v~l~~~~~rT~v~~~-t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~ 77 (1024)
+.|+|+|++|++|+ .+||||+|.++++++||+++.+ +.||+|||+|.|.+. .....|.|+|||+| . .+
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~-~~~~~l~~~V~d~d---~--~~ 75 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLP-EGVDSIYIEIFDER---A--FT 75 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEec-CCCcEEEEEEEeCC---C--Cc
Confidence 78999999999987 7999999999999999999876 899999999999995 44578999999999 4 57
Q ss_pred CCCeeEEEEEeCcc-ccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 78 SGELMGRVRVPVSS-IAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 78 ~d~~lG~~~i~L~~-l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
+|++||++.++|.. +..+ ...+.|++|.+ ..+ ....|+|+|+++|
T Consensus 76 ~dd~iG~~~i~l~~~~~~g---~~~~~W~~L~~-~~~---~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVFNG---ETLDDWYSLSG-KQG---EDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhccCC---CCccccEeCcC-ccC---CCCceEEEEEEeC
Confidence 89999999999964 5543 34789999983 332 3467999999987
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-19 Score=172.27 Aligned_cols=98 Identities=30% Similarity=0.487 Sum_probs=91.1
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCC
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 613 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~d 613 (1024)
..|.|+|+|++|.||..+|..++|||||++.+|+++.+|+++++++||+|||+|+|. ..++...|+++|||+|. |++|
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~-v~d~~~~lkv~VyD~D~-fs~d 81 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFT-VKDPNTPLKVTVYDKDT-FSSD 81 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEE-ecCCCceEEEEEEeCCC-CCcc
Confidence 458999999999999999988999999999999999999999999999999999999 67788999999999999 9999
Q ss_pred ccceEEEEEcccccCCCccc
Q 001703 614 TSLGHAEINFLKHTSTELAD 633 (1024)
Q Consensus 614 d~lG~~~i~l~~l~~~~~~~ 633 (1024)
||||.|+|+|..+.......
T Consensus 82 D~mG~A~I~l~p~~~~~~~~ 101 (168)
T KOG1030|consen 82 DFMGEATIPLKPLLEAQKMD 101 (168)
T ss_pred cccceeeeccHHHHHHhhhh
Confidence 99999999999987665443
|
|
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-19 Score=167.42 Aligned_cols=104 Identities=16% Similarity=0.260 Sum_probs=91.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----C--EEEeeecccCCCCCeEeEEEEEEeecC---CCCeEEEEEEec
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCN-----G--KTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFDF 606 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~--~~~kT~~~~~t~nP~WnE~f~f~~~~~---~~~~L~v~V~D~ 606 (1024)
.|+|+|++|+||+..+ .|.+||||+|.+. . ++++|+++.+|+||+|||+|+|.+... ....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999988 5999999999983 1 357899999999999999999997543 234799999999
Q ss_pred CCCCCCCccceEEEEEcccccCCCccceEEEccccc
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKL 642 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 642 (1024)
|. +++|++||++.++|.++..++..+.|++|+...
T Consensus 80 d~-~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~ 114 (120)
T cd08395 80 CF-ARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRI 114 (120)
T ss_pred cc-cCCCCEEEEEEEEHHHCcCCCcEEEEEECcCcc
Confidence 98 788999999999999999999999999998643
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=169.34 Aligned_cols=119 Identities=25% Similarity=0.445 Sum_probs=105.3
Q ss_pred eEEEEEEEEeeCCCCCCC--CCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCC
Q 001703 536 WVLTVALVEGVNLASSEM--TGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 613 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~--~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~d 613 (1024)
|+|+|+|++|+||+..+. .|.+||||++.+++++++|+++++++||.|||.|.|.+.......|.|+|||+|. ++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~-~~~~ 79 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDR-FAGK 79 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCC-CCCC
Confidence 689999999999999998 8999999999999999999999999999999999999765567899999999998 7899
Q ss_pred ccceEEEEEccccc---CCCccceEEEcccccc---ccccceeEEEEE
Q 001703 614 TSLGHAEINFLKHT---STELADMWVSLEGKLA---QSAQSKVHLRIF 655 (1024)
Q Consensus 614 d~lG~~~i~l~~l~---~~~~~~~w~~L~~~~~---~~~~g~l~l~~~ 655 (1024)
++||++.++|.++. .......||+|+++.. ...+|+|+|++.
T Consensus 80 ~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 80 DYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred CcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEE
Confidence 99999999999986 3345689999987522 235899999885
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=169.42 Aligned_cols=118 Identities=25% Similarity=0.351 Sum_probs=103.1
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCC
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 613 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~d 613 (1024)
..|.|+|+|++|+||++.|..|.+||||++.++++.++|+++++++||.|||+|.|.+.......|.|+|||+|. +++|
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~-~~~d 91 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF-FSPD 91 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC-CCCC
Confidence 457999999999999999999999999999999999999999999999999999999765556789999999998 8999
Q ss_pred ccceEEEEEcccccC-----CCccceEEEccccccccccceeEEEEEE
Q 001703 614 TSLGHAEINFLKHTS-----TELADMWVSLEGKLAQSAQSKVHLRIFL 656 (1024)
Q Consensus 614 d~lG~~~i~l~~l~~-----~~~~~~w~~L~~~~~~~~~g~l~l~~~~ 656 (1024)
++||++.++|.++.. ......|.+|.+ ...|+|+|++.+
T Consensus 92 ~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~----~~~g~i~l~~~~ 135 (136)
T cd08375 92 DFLGRTEIRVADILKETKESKGPITKRLLLHE----VPTGEVVVKLDL 135 (136)
T ss_pred CeeEEEEEEHHHhccccccCCCcEEEEecccc----ccceeEEEEEEe
Confidence 999999999999875 233345677653 457899999876
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-18 Score=166.39 Aligned_cols=114 Identities=28% Similarity=0.490 Sum_probs=103.1
Q ss_pred eEEEEEEEEeeCCCCCCC------CCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCC
Q 001703 536 WVLTVALVEGVNLASSEM------TGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGP 609 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~------~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~ 609 (1024)
|+|+|+|++|+||+..|. .|.+||||++.++++.++|+++++++||+|||.|.|.+.......|.|+|||+|.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~- 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDP- 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCC-
Confidence 579999999999999875 3789999999999999999999999999999999999766667899999999998
Q ss_pred CCCCccceEEEEEcccccCCCccceEEEccccccccccceeEEEEE
Q 001703 610 FDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIF 655 (1024)
Q Consensus 610 ~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ 655 (1024)
+ +|++||++.++|.++..+...+.||+|++. .+|+|+|++.
T Consensus 80 ~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~----~~G~~~~~~~ 120 (121)
T cd08391 80 D-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV----KSGRLHLKLE 120 (121)
T ss_pred C-CCCcEEEEEEEHHHhcccCccceEEECcCC----CCceEEEEEe
Confidence 6 899999999999999888888999999862 5799999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-18 Score=165.29 Aligned_cols=113 Identities=23% Similarity=0.378 Sum_probs=99.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCccce
Q 001703 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLG 617 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~lG 617 (1024)
|.|+|++|+||+.+ .+||||++.+++++.+|+++++++||+|||+|.|.+.......|.|+|||+|. + ++++||
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~-~-~~~~lG 75 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDK-A-KDDFLG 75 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCC-C-cCceee
Confidence 78999999999987 79999999999999999999999999999999999544456799999999998 5 889999
Q ss_pred EEEEEcccccCCC-----ccceEEEccccccccccceeEEEEEE
Q 001703 618 HAEINFLKHTSTE-----LADMWVSLEGKLAQSAQSKVHLRIFL 656 (1024)
Q Consensus 618 ~~~i~l~~l~~~~-----~~~~w~~L~~~~~~~~~g~l~l~~~~ 656 (1024)
++.++|.++.... ..+.||+|.+..+....|+|+|.+++
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 9999999986532 35689999986655668999999986
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-18 Score=164.52 Aligned_cols=117 Identities=28% Similarity=0.502 Sum_probs=102.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCccc
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 616 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~l 616 (1024)
.|+|+|++|++|+.++..|.+||||+|++++..++|+++++++||+|||+|.|.+.......|.|+|||+|. ++++++|
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~-~~~~~~i 79 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDL-VSKNDFL 79 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCC-CCCCcEe
Confidence 389999999999999988999999999999999999999999999999999999755556789999999998 7999999
Q ss_pred eEEEEEcccccCCCccceEEEcccccc-----ccccceeEEEE
Q 001703 617 GHAEINFLKHTSTELADMWVSLEGKLA-----QSAQSKVHLRI 654 (1024)
Q Consensus 617 G~~~i~l~~l~~~~~~~~w~~L~~~~~-----~~~~g~l~l~~ 654 (1024)
|++.++|.++..+...+.||.|.+... ....|.|++.|
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 80 GKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 999999999987777899999987322 23467777765
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.8e-18 Score=161.83 Aligned_cols=116 Identities=22% Similarity=0.383 Sum_probs=100.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCEE-EeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCccc
Q 001703 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKT-RTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 616 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~-~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~l 616 (1024)
|.|+|++|+||+++|..|.+||||++.+++.. .+|+++.+++||+|||.|.|.+ ......|.|+|||+|. +++|++|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~-~~~~~~l~v~v~d~~~-~~~d~~i 79 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHL-PPGFHTVSFYVLDEDT-LSRDDVI 79 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEee-CCCCCEEEEEEEECCC-CCCCCEE
Confidence 78999999999999999999999999998764 6999999999999999999995 4445799999999998 8999999
Q ss_pred eEEEEEcccccCC-CccceEEEcccc-ccccccceeEEEEE
Q 001703 617 GHAEINFLKHTST-ELADMWVSLEGK-LAQSAQSKVHLRIF 655 (1024)
Q Consensus 617 G~~~i~l~~l~~~-~~~~~w~~L~~~-~~~~~~g~l~l~~~ 655 (1024)
|++.+++..+..+ ...+.|++|++. .+....|+|+|.+.
T Consensus 80 G~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 80 GKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 9999999887654 347899999863 33345799998875
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.5e-18 Score=163.28 Aligned_cols=117 Identities=22% Similarity=0.342 Sum_probs=102.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC--CEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCcc
Q 001703 538 LTVALVEGVNLASSEMTGLSDPYVVFTCN--GKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~--~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~ 615 (1024)
|.|+|++|+||+. ..|.+||||++.++ .++++|+++.+++||+|||.|.|.+ ......|.|+|||+|. +++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~-~~~~~~l~~~v~d~~~-~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFEL-SPNSKELLFEVYDNGK-KSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEe-CCCCCEEEEEEEECCC-CCCCce
Confidence 5799999999998 68999999999997 4678999999999999999999995 4446789999999998 789999
Q ss_pred ceEEEEEcccccCCCccceEEEccccc--cccccceeEEEEEEec
Q 001703 616 LGHAEINFLKHTSTELADMWVSLEGKL--AQSAQSKVHLRIFLEN 658 (1024)
Q Consensus 616 lG~~~i~l~~l~~~~~~~~w~~L~~~~--~~~~~g~l~l~~~~~~ 658 (1024)
||++.+++..+..+.....|++|.++. +....|+|+|.+.+..
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 999999999998888888999998753 2446899999997643
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-18 Score=163.63 Aligned_cols=102 Identities=25% Similarity=0.352 Sum_probs=91.9
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeec---CCCCeEEEEEEec
Q 001703 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDF 606 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~---~~~~~L~v~V~D~ 606 (1024)
.+.|.|+|++|+||++++ .|.+||||++++. ..+++|+++++++||+|||+|.|++.+ .....|.|+|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 468999999999999999 9999999999996 347899999999999999999998622 2356899999999
Q ss_pred CCCCCCCccceEEEEEcccccCCCccceEEEc
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSL 638 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 638 (1024)
|. ++++++||++.|+|.++..++..+.||+|
T Consensus 91 d~-~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DS-LVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CC-CcCCcEEEEEEEeccccccCCCccceEEC
Confidence 98 89999999999999999988888999998
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-17 Score=160.82 Aligned_cols=117 Identities=15% Similarity=0.294 Sum_probs=99.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEE-EeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCc
Q 001703 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKT-RTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~-~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd 614 (1024)
..|+|+|++|+||++. +.+||||+|.+++.+ .+|++. +++||.|||.|.|.+.......|.|.|||+|. +++|+
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~-~~~d~ 78 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAK-RSKDS 78 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCC-CCCCC
Confidence 3699999999999975 479999999998744 688874 68999999999998544433589999999998 79999
Q ss_pred cceEEEEEcccccCCCccceEEEccccc--cccccceeEEEEEEe
Q 001703 615 SLGHAEINFLKHTSTELADMWVSLEGKL--AQSAQSKVHLRIFLE 657 (1024)
Q Consensus 615 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~--~~~~~g~l~l~~~~~ 657 (1024)
+||++.|+|..+..+...+.||+|.+.. +....|+|+|++.+.
T Consensus 79 ~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~ 123 (126)
T cd08400 79 EIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYS 123 (126)
T ss_pred eEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEE
Confidence 9999999999999888889999998854 344579999999875
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=161.69 Aligned_cols=119 Identities=22% Similarity=0.427 Sum_probs=103.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---EEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCC
Q 001703 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNG---KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQ 612 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~ 612 (1024)
+.|+|+|++|+||+..+..|.+||||++.+++ +..+|+++.+++||.|||+|.|.+.......|.|+|||+|. +++
T Consensus 1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~-~~~ 79 (126)
T cd04043 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSF-VGK 79 (126)
T ss_pred CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCC-CCC
Confidence 36899999999999999999999999999863 46799999999999999999999755556799999999998 789
Q ss_pred CccceEEEEEcccccC---CCccceEEEccccccccccceeEEEEEEeccCC
Q 001703 613 ATSLGHAEINFLKHTS---TELADMWVSLEGKLAQSAQSKVHLRIFLENNNG 661 (1024)
Q Consensus 613 dd~lG~~~i~l~~l~~---~~~~~~w~~L~~~~~~~~~g~l~l~~~~~~~~~ 661 (1024)
+++||++.++|..+.. +...+.|++|.+ +|+++|++.+...++
T Consensus 80 ~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~------~g~i~l~~~~~~~~~ 125 (126)
T cd04043 80 HDLCGRASLKLDPKRFGDDGLPREIWLDLDT------QGRLLLRVSMEGERD 125 (126)
T ss_pred CceEEEEEEecCHHHcCCCCCCceEEEEcCC------CCeEEEEEEEeeecc
Confidence 9999999999987543 446789999985 789999999987654
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.6e-18 Score=166.78 Aligned_cols=102 Identities=24% Similarity=0.317 Sum_probs=89.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----EEEeeecccCCCCCeEeEEEEEEeec--------------C-CC
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAME--------------E-PP 596 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~WnE~f~f~~~~--------------~-~~ 596 (1024)
.|.|+|++|+||+. .+|.+||||+|++.+ .+++|+++++|+||+|||+|.|++.. . ..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 37999999999998 579999999999975 67899999999999999999999741 1 12
Q ss_pred CeEEEEEEecCCCCCCCccceEEEEEcccccCC-CccceEEEcccc
Q 001703 597 SVLDVEVFDFDGPFDQATSLGHAEINFLKHTST-ELADMWVSLEGK 641 (1024)
Q Consensus 597 ~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~-~~~~~w~~L~~~ 641 (1024)
..|.|+|||++. +++|+|||++.|+|..+..+ ...+.||+|+++
T Consensus 79 ~~L~i~V~d~~~-~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 79 LELRVDLWHASM-GGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred EEEEEEEEcCCC-CCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence 479999999998 78999999999999999877 677899999874
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.8e-18 Score=162.40 Aligned_cols=115 Identities=30% Similarity=0.556 Sum_probs=96.4
Q ss_pred EEEEEEEeecCC------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEec-----CCCCeEEEEEEecCCCCCC
Q 001703 6 LYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHN-----IDDEELVVSVFQHNDDSGL 74 (1024)
Q Consensus 6 L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~-----~~~~~L~v~V~d~d~~~~f 74 (1024)
++|+|++|+||+ .+||||+|++++.+.+|+++++++||+|||+|.|.++. +....|.|.|||++ .
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~---~- 76 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRN---L- 76 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcc---c-
Confidence 589999999998 68999999999999999999999999999999999864 36789999999999 4
Q ss_pred CCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEE
Q 001703 75 FGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTIS 128 (1024)
Q Consensus 75 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~ 128 (1024)
.++|++||++.++|.++.... ......||+|..... + ..+.+|+|+|+++
T Consensus 77 -~~~d~~iG~~~i~l~~l~~~~-~~~~~~W~~L~~~~~-~-~~~~~Gei~l~~~ 126 (126)
T cd08682 77 -LGLDKFLGQVSIPLNDLDEDK-GRRRTRWFKLESKPG-K-DDKERGEIEVDIQ 126 (126)
T ss_pred -cCCCceeEEEEEEHHHhhccC-CCcccEEEECcCCCC-C-CccccceEEEEeC
Confidence 578999999999999987422 234678999983322 1 2457899999874
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-17 Score=158.29 Aligned_cols=117 Identities=26% Similarity=0.445 Sum_probs=103.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCcc
Q 001703 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~ 615 (1024)
|.|.|+|++|+||+..+..|.+||||++++++...+|+++++++||.|||+|.|.+ ......|.|+|||++. ++++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~-~~~~~~l~~~v~d~~~-~~~~~~ 78 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPI-KDIHDVLEVTVYDEDK-DKKPEF 78 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEe-cCcCCEEEEEEEECCC-CCCCce
Confidence 57999999999999999999999999999999999999999999999999999995 4456799999999998 789999
Q ss_pred ceEEEEEcccccCCCccceEEEcccccc-ccccceeEEEEEE
Q 001703 616 LGHAEINFLKHTSTELADMWVSLEGKLA-QSAQSKVHLRIFL 656 (1024)
Q Consensus 616 lG~~~i~l~~l~~~~~~~~w~~L~~~~~-~~~~g~l~l~~~~ 656 (1024)
||++.+++.++..+. ..|++|..... ...+|+|+|.+.+
T Consensus 79 iG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 79 LGKVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eeEEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence 999999999987554 57999987532 3458999998865
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-17 Score=165.47 Aligned_cols=119 Identities=21% Similarity=0.279 Sum_probs=102.2
Q ss_pred CeEEEEEEEEeeCCCCCC------------------------------CCCCCCcEEEEEECCEE-EeeecccCCCCCeE
Q 001703 535 GWVLTVALVEGVNLASSE------------------------------MTGLSDPYVVFTCNGKT-RTSSVQLQTCDPQW 583 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d------------------------------~~g~~DPyv~v~~~~~~-~kT~~~~~t~nP~W 583 (1024)
.|.|.|+|++|++|+.+| ..|++||||+|.+++.+ .+|+++++++||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 379999999999999988 35779999999999755 59999999999999
Q ss_pred eEEEEEEeecCCCCeEEEEEEecCCCCCCCccceEEEEEcccccCCCccceEEEccccccc--cccceeEEEEEE
Q 001703 584 HDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQ--SAQSKVHLRIFL 656 (1024)
Q Consensus 584 nE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~--~~~g~l~l~~~~ 656 (1024)
||+|.|.+ ..+...|.|+|||+|. ++ +++||++.+++.++..+...+.|++|.+..++ ...|+|+|++.+
T Consensus 86 nE~F~~~~-~~~~~~l~~~V~d~d~-~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 86 NESFHIYC-AHYASHVEFTVKDNDV-VG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ceEEEEEc-cCCCCEEEEEEEeCCC-cC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 99999985 4556789999999998 54 68999999999999988889999999875333 346789988865
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-17 Score=160.94 Aligned_cols=115 Identities=24% Similarity=0.430 Sum_probs=101.9
Q ss_pred CeEEEEEEEEeeCCCCCCCC----------CCCCcEEEEEECCEE-EeeecccCCCCCeEeEEEEEEeecCCCCeEEEEE
Q 001703 535 GWVLTVALVEGVNLASSEMT----------GLSDPYVVFTCNGKT-RTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEV 603 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d~~----------g~~DPyv~v~~~~~~-~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V 603 (1024)
.|.|+|+|++|+||++.|.. |.+||||++.++++. .+|+++.+++||.|||+|+|.+. ....|.|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~~v 80 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLELTV 80 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEEEE
Confidence 36899999999999998863 689999999999865 59999999999999999999964 457999999
Q ss_pred EecCCCCCCCccceEEEEEcccccC--CCccceEEEccccccccccceeEEEEEEec
Q 001703 604 FDFDGPFDQATSLGHAEINFLKHTS--TELADMWVSLEGKLAQSAQSKVHLRIFLEN 658 (1024)
Q Consensus 604 ~D~d~~~~~dd~lG~~~i~l~~l~~--~~~~~~w~~L~~~~~~~~~g~l~l~~~~~~ 658 (1024)
||++. ++++++||++.++|.++.. +...+.|++|++ +|+|+|++.+..
T Consensus 81 ~d~~~-~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~------~G~l~l~~~~~~ 130 (132)
T cd04014 81 FHDAA-IGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP------QGKLHVKIELKG 130 (132)
T ss_pred EeCCC-CCCCceEEEEEEEhHHhcccCCCcccEEEEccC------CcEEEEEEEEec
Confidence 99998 7899999999999999887 567899999984 799999998865
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-17 Score=162.71 Aligned_cols=118 Identities=21% Similarity=0.330 Sum_probs=101.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCE-------EEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCC
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-------TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGP 609 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~ 609 (1024)
+|+|+|++|+||+..|..|.+||||++.+++. +.+|+++++++||+|||+|.|.+. .....|.|+|||+|.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~-~~~~~l~~~v~d~~~- 78 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVN-PREHRLLFEVFDENR- 78 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEc-CCCCEEEEEEEECCC-
Confidence 48999999999999999999999999999754 579999999999999999999953 445689999999998
Q ss_pred CCCCccceEEEEEcccccCCCc------cceEEEccccc-cccccceeEEEEEE
Q 001703 610 FDQATSLGHAEINFLKHTSTEL------ADMWVSLEGKL-AQSAQSKVHLRIFL 656 (1024)
Q Consensus 610 ~~~dd~lG~~~i~l~~l~~~~~------~~~w~~L~~~~-~~~~~g~l~l~~~~ 656 (1024)
+++|++||++.+++.++..+.. ...||+|++.. .....|+|+|.+.+
T Consensus 79 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 79 LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 8999999999999999876543 46899999743 22458999999865
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-17 Score=163.44 Aligned_cols=127 Identities=34% Similarity=0.576 Sum_probs=104.7
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccC-CCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCC
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKN-NSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~-t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~ 77 (1024)
.|+|+|++|++|+ .+||||++++++++.+|+++.+ ++||+|||+|.|.+.++....|.|.|||++ . .+
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~---~--~~ 75 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRV---G--PN 75 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEec---C--CC
Confidence 4899999999997 6899999999999999999977 699999999999997666689999999999 3 56
Q ss_pred CCCeeEEEEEeCccccccC-CCCCCCEEEEeecCCC---CCCCCccccEEEEEEEEEecCCee
Q 001703 78 SGELMGRVRVPVSSIAAED-NHMLPPTWFSLETPKT---RKFTNKDCGKILLTISLNGKGHNL 136 (1024)
Q Consensus 78 ~d~~lG~~~i~L~~l~~~~-~~~~~~~W~~L~~~~~---~~~~~~~~G~I~lsl~~~~~~~~l 136 (1024)
++++||++.+||.++..+. .......||+|.+... ++...+.+|+|+|.++|.+..+.+
T Consensus 76 ~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~~ 138 (150)
T cd04019 76 KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHVL 138 (150)
T ss_pred CCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceEe
Confidence 8999999999999987542 2345789999995532 112246789999999998765443
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-17 Score=162.71 Aligned_cols=106 Identities=23% Similarity=0.294 Sum_probs=93.7
Q ss_pred CeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEC--C---EEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEE-ecC
Q 001703 535 GWVLTVALVEGVNLASSE-MTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVF-DFD 607 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d-~~g~~DPyv~v~~~--~---~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~-D~d 607 (1024)
.+.|.|+|++|+||++.+ ..|.+||||++++. + .++||+++++|+||+|||+|.|.+. .....|.|+|| |+|
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~ 106 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG 106 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence 358999999999999874 67899999999994 2 3789999999999999999999965 56779999999 688
Q ss_pred CCCCCCccceEEEEEcccccCCCccceEEEccccc
Q 001703 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEGKL 642 (1024)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 642 (1024)
. ++++++||++.|+|+.+..+.....||+|.++.
T Consensus 107 ~-~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~ 140 (146)
T cd04028 107 R-MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTS 140 (146)
T ss_pred C-CCCCceEEEEEEEcccccCCCCceeEEecCCcc
Confidence 7 789999999999999998887888999998754
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-17 Score=155.45 Aligned_cols=101 Identities=26% Similarity=0.307 Sum_probs=90.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCccc
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 616 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~l 616 (1024)
.|.|+|++|+||+..+..|.+||||+++++++.++|+++.++.||+|||.|.|.+..+....|.|+|||++. +++|
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~----~~~i 76 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT----GKSL 76 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC----CCcc
Confidence 379999999999999989999999999999999999999999999999999999766556799999999874 7899
Q ss_pred eEEEEEcccccCCC--ccceEEEcccc
Q 001703 617 GHAEINFLKHTSTE--LADMWVSLEGK 641 (1024)
Q Consensus 617 G~~~i~l~~l~~~~--~~~~w~~L~~~ 641 (1024)
|++.++|.++.... ..+.||+|+++
T Consensus 77 G~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 77 GSLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEEEHHHhhccccceeeeeEecCCC
Confidence 99999999986543 57899999863
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-17 Score=157.76 Aligned_cols=114 Identities=28% Similarity=0.587 Sum_probs=98.8
Q ss_pred EEEEEEEeecCC--CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCCCCeeE
Q 001703 6 LYVYVLQGQDLL--AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMG 83 (1024)
Q Consensus 6 L~V~V~~Ar~L~--~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~d~~lG 83 (1024)
|.|+|++|+||+ .+||||++++++.+.+|++++++.||+|||+|.|.+.......|.++|||++ . . ++++||
T Consensus 2 L~V~Vi~a~~L~~~~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d---~--~-~~~~lG 75 (121)
T cd08378 2 LYVRVVKARGLPANSNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKD---K--A-KDDFLG 75 (121)
T ss_pred EEEEEEEecCCCcccCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCC---C--C-cCceee
Confidence 899999999999 8999999999999999999999999999999999986567889999999999 3 2 789999
Q ss_pred EEEEeCccccccC--CCCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 84 RVRVPVSSIAAED--NHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 84 ~~~i~L~~l~~~~--~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
++.++|.++.... .+.....||+|.+... .+.+|+|+|++.|
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~----~~~~G~i~l~~~~ 119 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG----GRVGGELMLAVWF 119 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCCCC----CccceEEEEEEEe
Confidence 9999999987642 2334678999984322 4678999999987
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-17 Score=156.28 Aligned_cols=101 Identities=21% Similarity=0.289 Sum_probs=86.8
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC----EEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEecC
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG----KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 607 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~----~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d 607 (1024)
..+.|+|+|++|+||+ . .|.+||||++.+.. .+++|+++++|+||+|||+|.|.+..+ +...|.|+|||+|
T Consensus 12 ~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~D 88 (118)
T cd08677 12 QKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCD 88 (118)
T ss_pred cCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCC
Confidence 4579999999999999 2 46799999999952 577999999999999999999996432 3458999999999
Q ss_pred CCCCCCccceEEEEEcccccCCCccceEEEc
Q 001703 608 GPFDQATSLGHAEINFLKHTSTELADMWVSL 638 (1024)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 638 (1024)
+ ++++++||++.+++.++..+.....|..|
T Consensus 89 r-fs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 89 R-FSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred C-CCCCceEEEEEEccccccCCccccchhcC
Confidence 9 99999999999999998666667788765
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.1e-17 Score=157.82 Aligned_cols=115 Identities=23% Similarity=0.443 Sum_probs=99.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCC-------
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGP------- 609 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~------- 609 (1024)
.|+|+|++|++|+..|..|.+||||+|++++...+|+++.+++||+|||+|.|.+ ..+...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~-~~~~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFEC-HNSSDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEe-cCCCCEEEEEEEECCCCcccccce
Confidence 5899999999999999999999999999999999999999999999999999985 34467899999999851
Q ss_pred ---CCCCccceEEEEEcccccCCCccceEEEccccccc-cccceeEEEE
Q 001703 610 ---FDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQ-SAQSKVHLRI 654 (1024)
Q Consensus 610 ---~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~g~l~l~~ 654 (1024)
.+.+++||++.+++.++. +..++||+|+++++. ..+|+|.|++
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 146899999999999875 446799999986543 4588888864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.9e-17 Score=157.45 Aligned_cols=116 Identities=28% Similarity=0.461 Sum_probs=97.5
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecC---CCCeEEEEEEecCCCCCCC
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI---DDEELVVSVFQHNDDSGLF 75 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~---~~~~L~v~V~d~d~~~~f~ 75 (1024)
+|.|+|++|++|+ .+||||+++++++++||++++++.||+|||+|.|.+... ....|.|+|||.+ +
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~---~-- 75 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDR---R-- 75 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCC---C--
Confidence 5899999999998 689999999999999999999999999999999998532 3478999999998 4
Q ss_pred CC-CCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEE
Q 001703 76 GS-SGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLN 130 (1024)
Q Consensus 76 ~~-~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~ 130 (1024)
.+ ++++||++.+++.++... ......||+|++. +.. ...+|+|+|++.+.
T Consensus 76 ~~~~d~~lG~v~i~l~~l~~~--~~~~~~w~~L~~~-~~~--~~~~G~l~l~~~~~ 126 (127)
T cd04022 76 SGRRRSFLGRVRISGTSFVPP--SEAVVQRYPLEKR-GLF--SRVRGEIGLKVYIT 126 (127)
T ss_pred CcCCCCeeeEEEEcHHHcCCC--CCccceEeEeeeC-CCC--CCccEEEEEEEEEc
Confidence 44 789999999999998842 2346899999943 221 45789999999874
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.2e-17 Score=158.34 Aligned_cols=119 Identities=22% Similarity=0.357 Sum_probs=100.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecC---------CCCeEEEEEEec
Q 001703 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEE---------PPSVLDVEVFDF 606 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~---------~~~~L~v~V~D~ 606 (1024)
+.|+|+|++|++|+++|..|.+||||+|.+++++++|+++++|+||.|||.|.|.+... ....|.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 36899999999999999999999999999999999999999999999999999985321 125799999999
Q ss_pred CCCCCCCccceEEEE-EcccccC---CCccceEEEccccccccccceeEEEEEEe
Q 001703 607 DGPFDQATSLGHAEI-NFLKHTS---TELADMWVSLEGKLAQSAQSKVHLRIFLE 657 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i-~l~~l~~---~~~~~~w~~L~~~~~~~~~g~l~l~~~~~ 657 (1024)
|. +++|++||++.+ ++..+.. ......|++|..+. ...|+|.|.+++-
T Consensus 81 d~-~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~--~~~Geil~~~~~~ 132 (135)
T cd04017 81 DS-VGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG--QSAGELLAAFELI 132 (135)
T ss_pred cC-CCCCccceEEEeeeeeecccCCCCCCCceEEEeecCC--CchhheeEEeEEE
Confidence 98 799999999997 4444432 46778999998543 3589999999864
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.8e-17 Score=158.23 Aligned_cols=105 Identities=24% Similarity=0.340 Sum_probs=92.5
Q ss_pred CCeEEEEEEEEeeCCCCCCC-CCCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEe
Q 001703 534 DGWVLTVALVEGVNLASSEM-TGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFD 605 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~-~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D 605 (1024)
..+.|.|+|++|+||++.+. .|.+||||++++. ..++||+++++++||+|||+|.|.+... ....|.|+|||
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d 92 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWH 92 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 45689999999999999875 5899999999994 2467999999999999999999996432 34589999999
Q ss_pred cCCCCCCCccceEEEEEcccccCCCccceEEEcc
Q 001703 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639 (1024)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (1024)
+|. ++++++||++.|+|..+...+..+.|+||.
T Consensus 93 ~~~-~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 93 YDR-FGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred CCC-CCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 998 899999999999999999888899999984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=154.21 Aligned_cols=118 Identities=20% Similarity=0.318 Sum_probs=100.7
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCc
Q 001703 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd 614 (1024)
.++|+|+|++|++|+..|..|.+||||++.++++.++|+++++++||+|||.|.|.+ ..+...|.|+|||++. + +|+
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~-~~~~~~l~i~V~d~~~-~-~d~ 78 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYR-KKPRSPIKIQVWNSNL-L-CDE 78 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEe-cCCCCEEEEEEEECCC-C-CCC
Confidence 468999999999999999999999999999999999999999999999999999984 4557799999999998 5 589
Q ss_pred cceEEEEEcccccCCCccceEEEcccc---ccccccceeEEEEEEe
Q 001703 615 SLGHAEINFLKHTSTELADMWVSLEGK---LAQSAQSKVHLRIFLE 657 (1024)
Q Consensus 615 ~lG~~~i~l~~l~~~~~~~~w~~L~~~---~~~~~~g~l~l~~~~~ 657 (1024)
+||++.+++..+. .....|++|+.. ......|.|.|++.+.
T Consensus 79 ~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 79 FLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred ceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 9999999998754 345678899642 3334578999888653
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-17 Score=154.28 Aligned_cols=102 Identities=20% Similarity=0.391 Sum_probs=91.0
Q ss_pred EEEEEEEeeCCCCCCC-CCCCCcEEEEEECCEEEeeecccCCCCCeE-eEEEEEEeecC--CCCeEEEEEEecCCCCCCC
Q 001703 538 LTVALVEGVNLASSEM-TGLSDPYVVFTCNGKTRTSSVQLQTCDPQW-HDILEFDAMEE--PPSVLDVEVFDFDGPFDQA 613 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~-~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W-nE~f~f~~~~~--~~~~L~v~V~D~d~~~~~d 613 (1024)
|.|+|++|+||+.++. .|.+||||++++++++++|+++++++||+| ||+|.|.+... ....|.|+|||+|. +++|
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~-~~~~ 79 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT-YSAN 79 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC-CCCC
Confidence 5899999999999884 789999999999999999999999999999 99999996433 24689999999998 8999
Q ss_pred ccceEEEEEcccccC---CCccceEEEccc
Q 001703 614 TSLGHAEINFLKHTS---TELADMWVSLEG 640 (1024)
Q Consensus 614 d~lG~~~i~l~~l~~---~~~~~~w~~L~~ 640 (1024)
++||++.++|.++.. +...+.||+|..
T Consensus 80 ~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 80 DAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 999999999999876 456889999964
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.8e-17 Score=158.36 Aligned_cols=104 Identities=25% Similarity=0.408 Sum_probs=91.9
Q ss_pred CeEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEec
Q 001703 535 GWVLTVALVEGVNLASSEMT-GLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDF 606 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d~~-g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~ 606 (1024)
.+.|.|+|++|+||+++|.. |.+||||++++. ..+++|+++++++||+|||+|.|++... ....|.|+|||+
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~ 93 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHR 93 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeC
Confidence 46899999999999999975 899999999994 2457999999999999999999996432 345899999999
Q ss_pred CCCCCCCccceEEEEEcccccCCCccceEEEcc
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (1024)
|. ++++++||++.|+|.++...+....||+|+
T Consensus 94 ~~-~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 94 DS-LGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred CC-CCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 98 899999999999999998877888999984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.4e-17 Score=152.29 Aligned_cols=98 Identities=15% Similarity=0.199 Sum_probs=85.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCcc
Q 001703 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~ 615 (1024)
+.|.|+|++|++|+..+ ..||||+|++++++.+|++.++ .||.|||+|.|.+ ......|.|+|||+|. ..||+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~-~~~~~~L~v~V~dkd~--~~DD~ 74 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEI-NRLDLGLVIELWNKGL--IWDTL 74 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEE-cCCCCEEEEEEEeCCC--cCCCc
Confidence 47999999999997655 5699999999999999999887 4999999999995 4556679999999997 48999
Q ss_pred ceEEEEEcccccCCCcc--ceEEEccc
Q 001703 616 LGHAEINFLKHTSTELA--DMWVSLEG 640 (1024)
Q Consensus 616 lG~~~i~l~~l~~~~~~--~~w~~L~~ 640 (1024)
||++.|+|.++..+... .+||+|++
T Consensus 75 lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 75 VGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred eEEEEEEhHHcccCCCCCCCccEecCh
Confidence 99999999998766544 89999986
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.6e-17 Score=155.76 Aligned_cols=117 Identities=19% Similarity=0.339 Sum_probs=103.4
Q ss_pred EEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEecCCCCCCCccceEE
Q 001703 542 LVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDGPFDQATSLGHA 619 (1024)
Q Consensus 542 vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d~~~~~dd~lG~~ 619 (1024)
|++|+||+. ..|.+||||+|.+++.+++|+++++++||+|||+|.|.+... ....|.|+|||++. +++|++||++
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~-~~~d~~iG~~ 78 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK-VGRNRLIGSA 78 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC-CCCCceEEEE
Confidence 789999998 688999999999999999999999999999999999996433 46799999999998 7899999999
Q ss_pred EEEcccccCCCccceEEEccccccccccceeEEEEEEeccCC
Q 001703 620 EINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNG 661 (1024)
Q Consensus 620 ~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~~~~~~ 661 (1024)
.++|.++..+.....|++|....+....|+|++.+.+.+..+
T Consensus 79 ~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 79 TVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCCCC
Confidence 999999998888899999987655555789999998765543
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.7e-17 Score=156.96 Aligned_cols=105 Identities=26% Similarity=0.539 Sum_probs=94.3
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CEEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEecCC
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDG 608 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d~ 608 (1024)
..+.|.|+|++|+||++++..|.+||||++.+. .+.++|+++++++||+|||+|.|.+... ....|.|+|||+|.
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~ 93 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ 93 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC
Confidence 457899999999999999999999999999993 4578999999999999999999996432 24689999999998
Q ss_pred CCCCCccceEEEEEcccccCCCccceEEEcc
Q 001703 609 PFDQATSLGHAEINFLKHTSTELADMWVSLE 639 (1024)
Q Consensus 609 ~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (1024)
+++|++||++.++|.++..++..+.||+|+
T Consensus 94 -~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 94 -FSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred -CCCCceeEEEEEecccccCCCCcceEEECc
Confidence 899999999999999998888899999996
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-17 Score=154.42 Aligned_cols=101 Identities=21% Similarity=0.365 Sum_probs=88.7
Q ss_pred eEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEC---CEEEeeecccCCCCCeEeEEEEEEeecC---CCCeEEEEEEecCC
Q 001703 536 WVLTVALVEGVNLASSEMT-GLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFDFDG 608 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~-g~~DPyv~v~~~---~~~~kT~~~~~t~nP~WnE~f~f~~~~~---~~~~L~v~V~D~d~ 608 (1024)
|+|+|+|++|+||+..|.. |.+||||+|++. +...+|+++++++||+|||.|.|.+... ....|.|+|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999988 999999999984 3568999999999999999999986443 35689999999998
Q ss_pred CCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 609 PFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 609 ~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
+++|++||++.+++.++. ....|+++.-
T Consensus 81 -~~~dd~lG~~~i~l~~l~---~~~~~~~~~~ 108 (111)
T cd04041 81 -FTADDRLGRVEIDLKELI---EDRNWMGRRE 108 (111)
T ss_pred -CCCCCcceEEEEEHHHHh---cCCCCCcccc
Confidence 899999999999999987 3456888853
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=153.05 Aligned_cols=117 Identities=21% Similarity=0.411 Sum_probs=96.6
Q ss_pred cEEEEEEEEeecCC---CCCcEEEEEECCeE-EeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCCC
Q 001703 4 TRLYVYVLQGQDLL---AKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSG 79 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~---~~DPyv~v~l~~~~-~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~d 79 (1024)
..|+|+|++|+||+ .+||||+|++++.+ .+|+++ +++||.|||+|.|.+.......+.|.|||.+ + .+++
T Consensus 4 ~~L~V~Vi~A~~L~~~~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~---~--~~~d 77 (126)
T cd08400 4 RSLQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKA---K--RSKD 77 (126)
T ss_pred eEEEEEEEEeeCCCCCCCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECC---C--CCCC
Confidence 46999999999999 78999999998754 789874 6899999999999864444467999999998 3 5789
Q ss_pred CeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001703 80 ELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (1024)
Q Consensus 80 ~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (1024)
++||++.+||..+..+ .....||+|... .. ......|+|+|+++|.+
T Consensus 78 ~~iG~v~i~l~~l~~~---~~~~~W~~L~~~-~~-~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 78 SEIAEVTVQLSKLQNG---QETDEWYPLSSA-SP-LKGGEWGSLRIRARYSH 124 (126)
T ss_pred CeEEEEEEEHhHccCC---CcccEeEEcccC-CC-CCCCcCcEEEEEEEEEc
Confidence 9999999999998864 346889999843 22 12567899999999975
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.71 E-value=4e-17 Score=152.30 Aligned_cols=98 Identities=17% Similarity=0.334 Sum_probs=84.8
Q ss_pred CCcEEEEEEEEeecCC---CCCcEEEEEECC----eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEecCCCC
Q 001703 2 VSTRLYVYVLQGQDLL---AKDSYVKVQIGK----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDDS 72 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~---~~DPyv~v~l~~----~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~d~~~ 72 (1024)
..+.|.|+|++|+||+ .+||||++++.. .+++|+++++|+||+|||+|.|+++ +.....|.|+|||+|
T Consensus 12 ~~~~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~D--- 88 (118)
T cd08677 12 QKAELHVNILEAENISVDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCD--- 88 (118)
T ss_pred cCCEEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCC---
Confidence 3578999999999998 799999999963 4689999999999999999999988 677889999999999
Q ss_pred CCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEe
Q 001703 73 GLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107 (1024)
Q Consensus 73 ~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L 107 (1024)
+ .+++++||++.+++.++....+ ...|..|
T Consensus 89 r--fs~~d~IG~v~l~l~~~~~~~~---~~~W~~~ 118 (118)
T cd08677 89 R--FSRHSTLGELRLKLADVSMMLG---AAQWVDL 118 (118)
T ss_pred C--CCCCceEEEEEEccccccCCcc---ccchhcC
Confidence 6 4799999999999998865432 4567654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.8e-17 Score=151.02 Aligned_cols=94 Identities=15% Similarity=0.211 Sum_probs=83.4
Q ss_pred eEEEEEEEEeeCCCCCCCC----CCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecC-CCCeEEEEEEecCCCC
Q 001703 536 WVLTVALVEGVNLASSEMT----GLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEE-PPSVLDVEVFDFDGPF 610 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~----g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~-~~~~L~v~V~D~d~~~ 610 (1024)
|+|.|+|++|+||++.+.. +.+||||+|.++++++||+++++++||+|||.|.|.+... ....|.|+|||+|. +
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~-~ 79 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK-F 79 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC-C
Confidence 6899999999999998742 4589999999999999999999999999999999997543 33489999999998 8
Q ss_pred CCCccceEEEEEcccccCCC
Q 001703 611 DQATSLGHAEINFLKHTSTE 630 (1024)
Q Consensus 611 ~~dd~lG~~~i~l~~l~~~~ 630 (1024)
++|++||++.++|.++..+.
T Consensus 80 ~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 80 SFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCcceEEEEEEHHHHHhhC
Confidence 99999999999999987654
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=152.53 Aligned_cols=112 Identities=25% Similarity=0.405 Sum_probs=92.3
Q ss_pred EEEEEEEEeec---CC------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCC-
Q 001703 5 RLYVYVLQGQD---LL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGL- 74 (1024)
Q Consensus 5 ~L~V~V~~Ar~---L~------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f- 74 (1024)
.|.|+|++|+| |. .+||||+|++++++.||+++++++||+|||+|.|.+.. ....|.|+|||++ .+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~-~~~~l~v~V~d~d---~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYD-PCTVLTVGVFDNS---QSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecC-CCCEEEEEEEECC---Ccc
Confidence 48999999999 55 78999999999999999999999999999999999853 4468999999998 31
Q ss_pred ---CCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEE
Q 001703 75 ---FGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILL 125 (1024)
Q Consensus 75 ---~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~l 125 (1024)
...+|++||++.++|..+..+. ....||+|.....+. .+..|+|++
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~---~~~~~~~L~~~~~~~--~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDR---VYAHSYPLLSLNPSG--VKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCC---EEeeEEEeEeCCCCC--ccCCcEEEe
Confidence 0138999999999999988642 367899999544322 567888875
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.70 E-value=9e-17 Score=154.97 Aligned_cols=105 Identities=26% Similarity=0.450 Sum_probs=93.9
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CEEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEecCC
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDG 608 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d~ 608 (1024)
..+.|.|+|++|+||++++..|.+||||++.+. ++.++|+++++++||+|||+|.|.+... ....|.|+|||+|.
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~ 93 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR 93 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 456899999999999999999999999999984 3577999999999999999999996432 24589999999998
Q ss_pred CCCCCccceEEEEEcccccCCCccceEEEcc
Q 001703 609 PFDQATSLGHAEINFLKHTSTELADMWVSLE 639 (1024)
Q Consensus 609 ~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (1024)
++++++||++.++|.++..+...+.|++|+
T Consensus 94 -~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 94 -FSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred -CCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 899999999999999998888899999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.4e-17 Score=153.43 Aligned_cols=111 Identities=25% Similarity=0.468 Sum_probs=95.2
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccC-CCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCC
Q 001703 4 TRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKN-NSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~-t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~ 76 (1024)
+.|+|+|++|++|+ .+||||++++++.+++|+++++ ++||+|||+|.|.+.....+.|.|+|||++ . .
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~---~--~ 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDD---K--R 75 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCC---C--C
Confidence 57999999999998 6899999999998999998865 799999999999997556789999999998 3 3
Q ss_pred CCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 77 SSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
+ +++||++.+++.++...+ ....|++|... ....|+|+|+++|
T Consensus 76 ~-~~~iG~~~~~l~~~~~~~---~~~~w~~L~~~------~~~~G~i~l~l~f 118 (118)
T cd08681 76 K-PDLIGDTEVDLSPALKEG---EFDDWYELTLK------GRYAGEVYLELTF 118 (118)
T ss_pred C-CcceEEEEEecHHHhhcC---CCCCcEEeccC------CcEeeEEEEEEEC
Confidence 4 899999999999987642 25789999832 3478999999986
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-16 Score=152.23 Aligned_cols=114 Identities=29% Similarity=0.514 Sum_probs=97.6
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECC-eEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCC
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQIGK-HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~-~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~ 77 (1024)
+|+|+|++|++|+ .+||||++++++ ...+|++++++.||+|||+|.|.+. .....|.|+|||++ . .+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~-~~~~~l~~~v~D~d---~--~~ 74 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIE-DVTQPLYIKVFDYD---R--GL 74 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEec-CCCCeEEEEEEeCC---C--CC
Confidence 5899999999998 789999999987 5689999999999999999999985 44688999999999 3 57
Q ss_pred CCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001703 78 SGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (1024)
Q Consensus 78 ~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (1024)
++++||++.++|.++..+ .....|++|.+... .+..|+|+|.++|.|
T Consensus 75 ~~~~iG~~~~~l~~l~~~---~~~~~~~~L~~~~~----~~~~G~l~l~~~~~~ 121 (121)
T cd04042 75 TDDFMGSAFVDLSTLELN---KPTEVKLKLEDPNS----DEDLGYISLVVTLTP 121 (121)
T ss_pred CCcceEEEEEEHHHcCCC---CCeEEEEECCCCCC----ccCceEEEEEEEECC
Confidence 899999999999999864 23678999984332 357899999999854
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.9e-17 Score=155.01 Aligned_cols=105 Identities=19% Similarity=0.287 Sum_probs=90.7
Q ss_pred CCeEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEe
Q 001703 534 DGWVLTVALVEGVNLASSEMT-GLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFD 605 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~-g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D 605 (1024)
..+.|.|+|++|+||++++.. |.+||||++++. ..++||+++++++||+|||+|.|.+... ....|.|.|||
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~ 92 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWH 92 (128)
T ss_pred CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEe
Confidence 446899999999999999875 999999999994 3477999999999999999999996432 24699999999
Q ss_pred cCCCCCCCccceEEEEEcccccCC---CccceEEEcc
Q 001703 606 FDGPFDQATSLGHAEINFLKHTST---ELADMWVSLE 639 (1024)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~---~~~~~w~~L~ 639 (1024)
++. ++++++||++.|+|.++... .....||+|.
T Consensus 93 ~~~-~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 93 SRT-LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred CCC-CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 998 89999999999999997543 4678899984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=153.41 Aligned_cols=114 Identities=22% Similarity=0.395 Sum_probs=96.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC-CEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCC--Cc
Q 001703 538 LTVALVEGVNLASSEMTGLSDPYVVFTCN-GKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQ--AT 614 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~--dd 614 (1024)
|+|+|++|+||+..+..|.+||||++.++ .+.++|+++++++||+|||+|.|.+.. ...|.|+|||++. +++ |+
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~-~~~~~d~ 78 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKK-FKKKDQG 78 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCC-CCCCCCc
Confidence 78999999999999999999999999996 678899999999999999999999633 6799999999998 665 58
Q ss_pred cceEEEEEcccccCCC-ccceEEEcccccc---ccccceeEEEE
Q 001703 615 SLGHAEINFLKHTSTE-LADMWVSLEGKLA---QSAQSKVHLRI 654 (1024)
Q Consensus 615 ~lG~~~i~l~~l~~~~-~~~~w~~L~~~~~---~~~~g~l~l~~ 654 (1024)
+||++.+++.++.... ....|++|..... ....|+|.+++
T Consensus 79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 79 FLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred eEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999999986544 4478999976332 23367777665
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-16 Score=153.38 Aligned_cols=120 Identities=21% Similarity=0.393 Sum_probs=100.9
Q ss_pred cEEEEEEEEeecCC--------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCC
Q 001703 4 TRLYVYVLQGQDLL--------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLF 75 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~--------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~ 75 (1024)
+.|+|+|++|+||+ .+||||++++++.+.+|+++++++||.|||+|.|.+.......|.|+|||++ .
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~---~-- 75 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKD---R-- 75 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECC---C--
Confidence 57999999999997 4799999999999999999999999999999999996556789999999999 3
Q ss_pred CCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 76 GSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 76 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
.+++++||++.++|.++...+.......||+|.....+ ......|+|+|.++|
T Consensus 76 ~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~-~~~~~~G~i~l~~~~ 128 (128)
T cd04024 76 FAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPG-KTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCCCcceEEEEEHHHhhcccccCccceeEEccCcccC-ccccccceEEEEEEC
Confidence 56899999999999998753223346799999843222 235679999999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-16 Score=154.26 Aligned_cols=114 Identities=25% Similarity=0.526 Sum_probs=96.7
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCC
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~ 76 (1024)
-+.|+|+|++|++|+ .+||||++++++..++|++++++.||.|||+|.|.+.+.....|.|+|||.+ . .
T Consensus 14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d---~--~ 88 (136)
T cd08375 14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRD---F--F 88 (136)
T ss_pred cEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECC---C--C
Confidence 378999999999998 7899999999999999999999999999999999997667789999999999 3 5
Q ss_pred CCCCeeEEEEEeCccccccCC--CCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 77 SSGELMGRVRVPVSSIAAEDN--HMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~--~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
++|++||++.++|.++..... ......|..|. ....|+|+|++.+
T Consensus 89 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~--------~~~~g~i~l~~~~ 135 (136)
T cd08375 89 SPDDFLGRTEIRVADILKETKESKGPITKRLLLH--------EVPTGEVVVKLDL 135 (136)
T ss_pred CCCCeeEEEEEEHHHhccccccCCCcEEEEeccc--------cccceeEEEEEEe
Confidence 789999999999999886321 22334556554 4578999999876
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-16 Score=150.63 Aligned_cols=112 Identities=19% Similarity=0.396 Sum_probs=94.3
Q ss_pred EEEEEEEeecCC-------CCCcEEEEEECCe-EEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCC
Q 001703 6 LYVYVLQGQDLL-------AKDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (1024)
Q Consensus 6 L~V~V~~Ar~L~-------~~DPyv~v~l~~~-~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~ 77 (1024)
|.|+|++|+||+ .+||||.|++++. .++|+++++|+||+|||+|.|.++ .....|.|.|||++ + .+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~-~~~~~l~~~v~d~~---~--~~ 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIP-RTFRHLSFYIYDRD---V--LR 75 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcC-CCCCEEEEEEEECC---C--CC
Confidence 789999999998 4799999999765 589999999999999999999995 44579999999999 4 57
Q ss_pred CCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 78 SGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 78 ~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
++++||++.++|.++..+ .....||+|+ +.... .+.+|+|+|++++
T Consensus 76 ~~~~iG~~~i~l~~l~~~---~~~~~w~~L~-~~~~~--~~~~G~i~l~~~~ 121 (121)
T cd08401 76 RDSVIGKVAIKKEDLHKY---YGKDTWFPLQ-PVDAD--SEVQGKVHLELRL 121 (121)
T ss_pred CCceEEEEEEEHHHccCC---CCcEeeEEEE-ccCCC--CcccEEEEEEEEC
Confidence 899999999999998864 3468899999 43222 3468999999864
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-16 Score=153.92 Aligned_cols=104 Identities=21% Similarity=0.391 Sum_probs=89.7
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----EEEeeecccCCCCCeEeEEEEEEeecC---CCCeEEEEEEe
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFD 605 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~WnE~f~f~~~~~---~~~~L~v~V~D 605 (1024)
..+.|.|+|++|+||+..+..|.+||||+|.+.+ .+++|+++++++||+|||+|.|.+... ....|.|+|||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d 93 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence 3468999999999999999999999999999963 577999999999999999999985332 35689999999
Q ss_pred cCCCCCCCccceEEEEEcccccCCCccceEEEcc
Q 001703 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639 (1024)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (1024)
+|. ++++++||++.++|.+.. ......||+|+
T Consensus 94 ~~~-~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 94 YDR-DGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred CCC-CCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 998 789999999999999833 33457899995
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-16 Score=152.52 Aligned_cols=102 Identities=21% Similarity=0.291 Sum_probs=88.8
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeecC-CCCeEEEEEEecCC
Q 001703 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE-PPSVLDVEVFDFDG 608 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~~-~~~~L~v~V~D~d~ 608 (1024)
.+.|.|+|++|+||++++ .|.+||||++++. ..+++|+++++++||+|||+|.|.+... ....|.|+|||+|.
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~ 89 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS 89 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence 468999999999999999 8999999999995 2467999999999999999999996332 23579999999997
Q ss_pred CCC-CCccceEEEEEcccccCCCccceEEEc
Q 001703 609 PFD-QATSLGHAEINFLKHTSTELADMWVSL 638 (1024)
Q Consensus 609 ~~~-~dd~lG~~~i~l~~l~~~~~~~~w~~L 638 (1024)
.+ ++++||++.|+|.++..+...+.||.|
T Consensus 90 -~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 90 -KSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred -CcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 55 478999999999999877778999987
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-16 Score=153.13 Aligned_cols=106 Identities=18% Similarity=0.252 Sum_probs=90.4
Q ss_pred CCeEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEC---CEEEeeecccCCCCCeEeEEEEEEeecC---CCCeEEEEEEec
Q 001703 534 DGWVLTVALVEGVNLASSEMT-GLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFDF 606 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~-g~~DPyv~v~~~---~~~~kT~~~~~t~nP~WnE~f~f~~~~~---~~~~L~v~V~D~ 606 (1024)
..+.|+|+|++|+||++.+.. |.+||||++.+. +++.||+++++++||+|||+|.|..... ....|.|+|||+
T Consensus 14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~ 93 (128)
T cd08388 14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSF 93 (128)
T ss_pred CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEc
Confidence 346899999999999999876 999999999985 4567999999999999999999942221 234799999999
Q ss_pred CCCCCCCccceEEEEEcccccCC--CccceEEEccc
Q 001703 607 DGPFDQATSLGHAEINFLKHTST--ELADMWVSLEG 640 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~--~~~~~w~~L~~ 640 (1024)
|. +++|++||++.|+|.++... +....|.+|++
T Consensus 94 d~-~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 94 DR-YSRDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred CC-CCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 98 89999999999999998554 66788999874
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-16 Score=152.32 Aligned_cols=106 Identities=24% Similarity=0.494 Sum_probs=93.9
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEE---CCEEEeeecccCCCCCeEeEEEEEEeecC---CCCeEEEEEEecC
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTC---NGKTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFDFD 607 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~---~~~~~kT~~~~~t~nP~WnE~f~f~~~~~---~~~~L~v~V~D~d 607 (1024)
..+.|.|+|++|+||+..+..|.+||||++.+ ++++.+|+++++++||+|||+|.|.+... ....|.++|||+|
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d 93 (125)
T cd08386 14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCC
Confidence 35689999999999999999999999999999 35678999999999999999999974322 2357999999999
Q ss_pred CCCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
. ++++++||++.++|.++..+...+.|++|.+
T Consensus 94 ~-~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~ 125 (125)
T cd08386 94 R-FSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP 125 (125)
T ss_pred C-CcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence 8 8999999999999999998888999999963
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.9e-16 Score=147.99 Aligned_cols=109 Identities=27% Similarity=0.519 Sum_probs=95.8
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCC
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~ 78 (1024)
.|+|+|++|++|+ .+||||++++++.+.+|+++++++||.|||+|.|.+.......|.|+|||.+ . .++
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~---~--~~~ 75 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKD---T--GKK 75 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECC---C--CCC
Confidence 3789999999998 6899999999999999999999999999999999986555789999999999 3 568
Q ss_pred CCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEE
Q 001703 79 GELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLN 130 (1024)
Q Consensus 79 d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~ 130 (1024)
+++||++.++|.++..+ .....|++|. + ..|+|++.+.|.
T Consensus 76 ~~~iG~~~~~l~~l~~~---~~~~~w~~L~-~--------~~G~~~~~~~~~ 115 (116)
T cd08376 76 DEFIGRCEIDLSALPRE---QTHSLELELE-D--------GEGSLLLLLTLT 115 (116)
T ss_pred CCeEEEEEEeHHHCCCC---CceEEEEEcc-C--------CCcEEEEEEEec
Confidence 99999999999998764 3478899998 2 259999998874
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-16 Score=155.25 Aligned_cols=102 Identities=21% Similarity=0.386 Sum_probs=89.0
Q ss_pred EEEEEEEeeCCCCCCCCC--------------CCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEee-cCCCCeEEEE
Q 001703 538 LTVALVEGVNLASSEMTG--------------LSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAM-EEPPSVLDVE 602 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g--------------~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~-~~~~~~L~v~ 602 (1024)
|.|+|++|++|+.+|..+ .+||||+|.+++++.+|+++++++||+|||+|.|.+. +.....|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 789999999999998554 7899999999999999999999999999999999964 3445699999
Q ss_pred EEecCCCCCCCccceEEEEEcccccCCCc-------cceEEEccc
Q 001703 603 VFDFDGPFDQATSLGHAEINFLKHTSTEL-------ADMWVSLEG 640 (1024)
Q Consensus 603 V~D~d~~~~~dd~lG~~~i~l~~l~~~~~-------~~~w~~L~~ 640 (1024)
|||+|. +++|++||++.|+|.++...+. ...|+.|.+
T Consensus 82 v~D~d~-~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 82 IRDWDR-VGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG 125 (151)
T ss_pred EEECCC-CCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence 999998 7899999999999999866542 357777765
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.9e-16 Score=150.53 Aligned_cols=117 Identities=21% Similarity=0.509 Sum_probs=96.5
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecC---------CCCeEEEEEEecC
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI---------DDEELVVSVFQHN 69 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~---------~~~~L~v~V~d~d 69 (1024)
+|+|+|++|++|+ .+||||+|++++.+++|+++++++||.|||+|.|.+... ....|.|+|||+|
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 6899999999998 789999999999999999999999999999999984321 2367999999999
Q ss_pred CCCCCCCCCCCeeEEEEE-eCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001703 70 DDSGLFGSSGELMGRVRV-PVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (1024)
Q Consensus 70 ~~~~f~~~~d~~lG~~~i-~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (1024)
+ .++|++||++.+ |+..+..........+|++|.+. ....|+|+|++.+.+.
T Consensus 82 ---~--~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~------~~~~Geil~~~~~~~~ 134 (135)
T cd04017 82 ---S--VGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKG------GQSAGELLAAFELIEV 134 (135)
T ss_pred ---C--CCCCccceEEEeeeeeecccCCCCCCCceEEEeecC------CCchhheeEEeEEEEe
Confidence 3 578999999997 66555543344567899999822 3478999999999763
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-16 Score=148.76 Aligned_cols=99 Identities=25% Similarity=0.356 Sum_probs=83.8
Q ss_pred EEEEEEEEeecCC-----CCCcEEEEEEC-----C--eEEeeecccCCCCCeEeeEEEEEEec---CCCCeEEEEEEecC
Q 001703 5 RLYVYVLQGQDLL-----AKDSYVKVQIG-----K--HKSKSRILKNNSNPVWNEEFVFRVHN---IDDEELVVSVFQHN 69 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~-----~~DPyv~v~l~-----~--~~~rT~v~~~t~nP~WnE~f~f~v~~---~~~~~L~v~V~d~d 69 (1024)
+|+|+|++|++|+ .+||||+|++. . ++++|+++++++||+|||+|.|.++. +....|.|.|||+|
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 5899999999998 68999999983 1 34789999999999999999999862 34467999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCC
Q 001703 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPK 111 (1024)
Q Consensus 70 ~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~ 111 (1024)
..+++++||++.+||.++...+ ....|++|++..
T Consensus 81 -----~~~~dd~IG~~~l~l~~~~~~~---~~~~w~~L~~~~ 114 (120)
T cd08395 81 -----FARDDRLVGVTVLQLRDIAQAG---SCACWLPLGRRI 114 (120)
T ss_pred -----ccCCCCEEEEEEEEHHHCcCCC---cEEEEEECcCcc
Confidence 3568999999999999999754 367899998443
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.1e-16 Score=149.76 Aligned_cols=118 Identities=19% Similarity=0.322 Sum_probs=100.0
Q ss_pred eEEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC--EEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCC
Q 001703 536 WVLTVALVEGVNLASSE-MTGLSDPYVVFTCNG--KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQ 612 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d-~~g~~DPyv~v~~~~--~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~ 612 (1024)
|.|.|+|++|+||+..+ ..|.+||||++.+++ ...+|+++.+++||.|||.|.|.+. .....|.|+|||++. +++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~-~~~ 79 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFND-KRK 79 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCC-CCC
Confidence 68999999999999765 357799999999987 7899999999999999999999955 557799999999998 789
Q ss_pred CccceEEEEEcccccCCCccc-eEEEccccccccccceeEEEEEEe
Q 001703 613 ATSLGHAEINFLKHTSTELAD-MWVSLEGKLAQSAQSKVHLRIFLE 657 (1024)
Q Consensus 613 dd~lG~~~i~l~~l~~~~~~~-~w~~L~~~~~~~~~g~l~l~~~~~ 657 (1024)
|++||++.++|.++..+.... .|++|.. +....|+|++.+.+-
T Consensus 80 d~~iG~~~~~l~~l~~~~~~~~~~~~~~~--~~k~~G~i~~~l~~~ 123 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQENLTKNLLR--NGKPVGELNYDLRFF 123 (124)
T ss_pred CceeEEEEEEHHHhccCccccCcchhhhc--CCccceEEEEEEEeC
Confidence 999999999999988776664 4566653 223479999998763
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-16 Score=151.49 Aligned_cols=105 Identities=24% Similarity=0.351 Sum_probs=93.2
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEec
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDF 606 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~ 606 (1024)
..+.|+|+|++|+||+..+..+.+||||+|.+. ..+++|+++++++||+|||+|.|.+... ....|.|.|||+
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~ 93 (127)
T cd04030 14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNS 93 (127)
T ss_pred CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEEC
Confidence 346899999999999999999999999999995 4678999999999999999999996432 246899999999
Q ss_pred CCCC--CCCccceEEEEEcccccCCCccceEEEcc
Q 001703 607 DGPF--DQATSLGHAEINFLKHTSTELADMWVSLE 639 (1024)
Q Consensus 607 d~~~--~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (1024)
+. + +++++||++.++|.++..+.....||+|.
T Consensus 94 ~~-~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 94 KS-FLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred Cc-ccCCCCceEEEEEEecccccccCCccceEECc
Confidence 97 5 68999999999999998888889999984
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.8e-17 Score=173.37 Aligned_cols=123 Identities=25% Similarity=0.374 Sum_probs=103.6
Q ss_pred HHhhccccCCCCCc-------cccCCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CEEEeeecccCCCCCeE
Q 001703 516 FVRARLRKGSDHGV-------KAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQW 583 (1024)
Q Consensus 516 ~~~~~~~~~~d~~~-------~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W 583 (1024)
..+.++++|.|+.. .++.....|+|+|.+|+||.++|.+|.|||||++++- ..+.+|++++.+|||+|
T Consensus 153 v~nVPslCG~DhtE~RGrl~l~~~~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~w 232 (683)
T KOG0696|consen 153 VENVPSLCGTDHTERRGRLYLEAHIKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVW 232 (683)
T ss_pred hhcCCcccCCcchhhcceEEEEEEecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccc
Confidence 35567788877632 2334566899999999999999999999999999993 45779999999999999
Q ss_pred eEEEEEEeec-CCCCeEEEEEEecCCCCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 584 HDILEFDAME-EPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 584 nE~f~f~~~~-~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
||+|.|.+.+ +....|.|+|||||+ -+++||+|...+.+++|... ..+.||.|..
T Consensus 233 NEtftf~Lkp~DkdrRlsiEvWDWDr-TsRNDFMGslSFgisEl~K~-p~~GWyKlLs 288 (683)
T KOG0696|consen 233 NETFTFKLKPSDKDRRLSIEVWDWDR-TSRNDFMGSLSFGISELQKA-PVDGWYKLLS 288 (683)
T ss_pred cceeEEecccccccceeEEEEecccc-cccccccceecccHHHHhhc-chhhHHHHhh
Confidence 9999999743 446699999999999 49999999999999998765 4688999975
|
|
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.6e-16 Score=147.35 Aligned_cols=113 Identities=31% Similarity=0.471 Sum_probs=98.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-EEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCccc
Q 001703 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 616 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~l 616 (1024)
|+|+|++|++|+..+..|.+||||++.+++ +.++|+++.+++||.|||+|.|.+.......|.|+|||++. ++++++|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~-~~~~~~i 79 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDR-GGKDDLL 79 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCC-CCCCCce
Confidence 579999999999999889999999999975 45799999999999999999999765567799999999998 7899999
Q ss_pred eEEEEEcccccCCCccceEEEccccccccccceeEE
Q 001703 617 GHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHL 652 (1024)
Q Consensus 617 G~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l 652 (1024)
|++.+++.++..+...+.|++|.++++. ..|.|.|
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~~g~~-~~~~~~~ 114 (115)
T cd04040 80 GSAYIDLSDLEPEETTELTLPLDGQGGG-KLGAVFL 114 (115)
T ss_pred EEEEEEHHHcCCCCcEEEEEECcCCCCc-cCceEEc
Confidence 9999999999888889999999875443 3566553
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.5e-16 Score=150.51 Aligned_cols=116 Identities=31% Similarity=0.537 Sum_probs=96.9
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCe-------EEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCC
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQIGKH-------KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDD 71 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~-------~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~ 71 (1024)
.|+|+|++|++|+ .+||||++++++. +.+|++++++.||.|||+|.|.+. .....|.|+|||++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~-~~~~~l~~~v~d~~-- 77 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVN-PREHRLLFEVFDEN-- 77 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEc-CCCCEEEEEEEECC--
Confidence 4899999999998 6899999999654 479999999999999999999984 44678999999999
Q ss_pred CCCCCCCCCeeEEEEEeCccccccCC---CCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 72 SGLFGSSGELMGRVRVPVSSIAAEDN---HMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 72 ~~f~~~~d~~lG~~~i~L~~l~~~~~---~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
. .+++++||++.+++.++..... ......||+|++ +..+ .+..|+|+|++.|
T Consensus 78 -~--~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~-~~~~--~~~~G~l~~~~~~ 132 (133)
T cd04033 78 -R--LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRP-RSSK--SRVKGHLRLYMAY 132 (133)
T ss_pred -C--CCCCCeeEEEEEEHHHCCCcCccccccccchheeeee-cCCC--CcceeEEEEEEee
Confidence 3 5789999999999999886532 235678999994 3222 4679999999987
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.7e-16 Score=147.49 Aligned_cols=101 Identities=21% Similarity=0.384 Sum_probs=88.9
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCC----CCeEEEEEEecCCCC
Q 001703 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEP----PSVLDVEVFDFDGPF 610 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~----~~~L~v~V~D~d~~~ 610 (1024)
.+.|+|+|++|+||+ .|.+||||++++++++++|+++++++||.|||+|.|.+.... ...|.|+|||++. +
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~-~ 77 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS-L 77 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc-c
Confidence 368999999999998 578999999999999999999999999999999999964332 3589999999998 7
Q ss_pred CCCccceEEEEEcccccCC---CccceEEEccc
Q 001703 611 DQATSLGHAEINFLKHTST---ELADMWVSLEG 640 (1024)
Q Consensus 611 ~~dd~lG~~~i~l~~l~~~---~~~~~w~~L~~ 640 (1024)
++|++||++.++|+++..+ .....|++|.+
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 8999999999999998665 34578999964
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.6e-16 Score=149.46 Aligned_cols=104 Identities=18% Similarity=0.236 Sum_probs=90.6
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC------CEEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEe
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN------GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFD 605 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~------~~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D 605 (1024)
..+.|.|+|++|+||++++..|.+||||++.+- ..+++|+++++++||+|||+|.|++... ....|.|+|||
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~ 91 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCS 91 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEe
Confidence 456899999999999999989999999999983 2478999999999999999999996433 45699999999
Q ss_pred cCCCCCCCccceEEEEEcccccCC-CccceEEEc
Q 001703 606 FDGPFDQATSLGHAEINFLKHTST-ELADMWVSL 638 (1024)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~-~~~~~w~~L 638 (1024)
+|. ++++++||++.|+|.++... .....||+|
T Consensus 92 ~~~-~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 92 VGP-DQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCC-CCceeEEEEEEEEhhhccCCCccccccccC
Confidence 998 89999999999999998554 457789986
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.66 E-value=9e-16 Score=147.75 Aligned_cols=115 Identities=24% Similarity=0.453 Sum_probs=96.1
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCC
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~ 78 (1024)
+|+|+|++|++|. .+||||+|++++.+.+|+++++++||.|||+|.|.+.......|.|+|||++ . .++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~---~--~~~ 75 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWD---L--VSK 75 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECC---C--CCC
Confidence 5899999999997 6899999999998999999999999999999999986555788999999999 3 578
Q ss_pred CCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCC-CCCccccEEEEEE
Q 001703 79 GELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRK-FTNKDCGKILLTI 127 (1024)
Q Consensus 79 d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~-~~~~~~G~I~lsl 127 (1024)
+++||++.++|.++...+ ....||.|......+ ......|.|.+.+
T Consensus 76 ~~~iG~~~~~l~~l~~~~---~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 76 NDFLGKVVFSIQTLQQAK---QEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred CcEeEEEEEEHHHcccCC---CCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 999999999999987642 357899998432221 2466788888865
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.3e-16 Score=149.20 Aligned_cols=105 Identities=15% Similarity=0.276 Sum_probs=92.0
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CEEEeeecccCCCCCeEeEEEEEE-eecC--CCCeEEEEEEecC
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFD-AMEE--PPSVLDVEVFDFD 607 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~t~nP~WnE~f~f~-~~~~--~~~~L~v~V~D~d 607 (1024)
..+.|.|+|++|+||++.+..|.+||||++.+. .++++|+++++ +||+|||+|.|+ +... ....|.++|||+|
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~ 92 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVE 92 (124)
T ss_pred CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECC
Confidence 345899999999999999999999999998773 46789999887 999999999998 3221 3568999999999
Q ss_pred CCCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
. ++++++||++.|+|..+..+.....|++|++
T Consensus 93 ~-~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 93 R-MRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred C-cccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 8 8999999999999999998889999999974
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=147.81 Aligned_cols=117 Identities=22% Similarity=0.438 Sum_probs=98.4
Q ss_pred EEEEEEEeecCC----CCCcEEEEEECC--eEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCCC
Q 001703 6 LYVYVLQGQDLL----AKDSYVKVQIGK--HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSG 79 (1024)
Q Consensus 6 L~V~V~~Ar~L~----~~DPyv~v~l~~--~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~d 79 (1024)
|.|+|++|+||+ .+||||+++++. .+.+|+++++++||+|||+|.|.+. .....|.|+|||++ . .+++
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~-~~~~~l~~~v~d~~---~--~~~~ 74 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELS-PNSKELLFEVYDNG---K--KSDS 74 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeC-CCCCEEEEEEEECC---C--CCCC
Confidence 679999999996 899999999973 5689999999999999999999994 55788999999999 3 4689
Q ss_pred CeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEecC
Q 001703 80 ELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKG 133 (1024)
Q Consensus 80 ~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~ 133 (1024)
++||++.+++.++...+. ...|++|. ++... .....|+|.+.+.|.+.+
T Consensus 75 ~~lG~~~i~l~~l~~~~~---~~~~~~L~-~~~~~-~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 75 KFLGLAIVPFDELRKNPS---GRQIFPLQ-GRPYE-GDSVSGSITVEFLFMEPA 123 (126)
T ss_pred ceEEEEEEeHHHhccCCc---eeEEEEec-CCCCC-CCCcceEEEEEEEEeccc
Confidence 999999999999987533 56899998 33221 245799999999998753
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.3e-16 Score=151.32 Aligned_cols=114 Identities=15% Similarity=0.225 Sum_probs=97.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-EEEeeeccc-CCCCCeEeEEEEEEeecCC----CCeEEEEEEecCCCC
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQL-QTCDPQWHDILEFDAMEEP----PSVLDVEVFDFDGPF 610 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~-~t~nP~WnE~f~f~~~~~~----~~~L~v~V~D~d~~~ 610 (1024)
.|+|+|++|++|+..+..|.+||||+|++++ .+.+|++.. ++.||.|||.|.|.+.... ...|.|+|||++. +
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~-~ 79 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP-S 79 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC-C
Confidence 3799999999999999899999999999988 888999975 5899999999999964442 6799999999998 7
Q ss_pred CCCccceEEEEEcccccCCCc-----cceEEEccccccccccceeEE
Q 001703 611 DQATSLGHAEINFLKHTSTEL-----ADMWVSLEGKLAQSAQSKVHL 652 (1024)
Q Consensus 611 ~~dd~lG~~~i~l~~l~~~~~-----~~~w~~L~~~~~~~~~g~l~l 652 (1024)
++|++||++.++|.++..+.. ...||+|..+.++ ..|.|++
T Consensus 80 ~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~-~~G~~~~ 125 (125)
T cd04051 80 LGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGK-PQGVLNF 125 (125)
T ss_pred CCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCC-cCeEEeC
Confidence 899999999999999876654 3789999975543 4677764
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.8e-16 Score=149.34 Aligned_cols=105 Identities=23% Similarity=0.377 Sum_probs=95.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccC-CCCCeEeEEEEEEeecC---CCCeEEEEEEecCCCCC
Q 001703 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQ-TCDPQWHDILEFDAMEE---PPSVLDVEVFDFDGPFD 611 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~-t~nP~WnE~f~f~~~~~---~~~~L~v~V~D~d~~~~ 611 (1024)
|.|.|+|++|+||+..+..+.+||||+++++++.++|++..+ ++||+|||+|.|.+... ....|.|+|||.+. ++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~-~~ 79 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN-FS 79 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc-CC
Confidence 579999999999999998999999999999999999999874 99999999999996544 25689999999998 88
Q ss_pred CCccceEEEEEcccccCCCccceEEEcccc
Q 001703 612 QATSLGHAEINFLKHTSTELADMWVSLEGK 641 (1024)
Q Consensus 612 ~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~ 641 (1024)
+|++||++.++|.++..++..+.|++|.+.
T Consensus 80 ~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 80 DDDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 999999999999999888888999999873
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-15 Score=144.17 Aligned_cols=96 Identities=25% Similarity=0.473 Sum_probs=84.7
Q ss_pred cEEEEEEEEeecCC---CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCCCC
Q 001703 4 TRLYVYVLQGQDLL---AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGE 80 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~---~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~d~ 80 (1024)
+.|.|+|++||+|. ..||||+|++++++.+|++.++ .||.|||+|.|.+. .....|.|+|||+| ...|+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~-~~~~~L~v~V~dkd------~~~DD 73 (127)
T cd08394 2 SLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEIN-RLDLGLVIELWNKG------LIWDT 73 (127)
T ss_pred ceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEc-CCCCEEEEEEEeCC------CcCCC
Confidence 58999999999999 6799999999999999999988 59999999999995 45555999999999 34999
Q ss_pred eeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 81 LMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 81 ~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+||++.|||.++...+ .....+||+|+
T Consensus 74 ~lG~v~i~L~~v~~~~-~~~~~~Wy~L~ 100 (127)
T cd08394 74 LVGTVWIPLSTIRQSN-EEGPGEWLTLD 100 (127)
T ss_pred ceEEEEEEhHHcccCC-CCCCCccEecC
Confidence 9999999999998763 35568999998
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-15 Score=149.29 Aligned_cols=120 Identities=20% Similarity=0.263 Sum_probs=97.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE-----CCEEEeeecccCCCCCeEeEEEEEEeecC--------CCCeEEEEE
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTC-----NGKTRTSSVQLQTCDPQWHDILEFDAMEE--------PPSVLDVEV 603 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~~~~~t~nP~WnE~f~f~~~~~--------~~~~L~v~V 603 (1024)
.|+|....+.+|++.+..|.+||||++.+ +.++.||+++++|+||+|||+|.|.+... ....|.|+|
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V 84 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV 84 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence 44455444445888888899999999997 24688999999999999999999996332 135799999
Q ss_pred EecCCCC-CCCccceEEEEEcccccCCCccceEEEccccccccccceeEEEEEEec
Q 001703 604 FDFDGPF-DQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLEN 658 (1024)
Q Consensus 604 ~D~d~~~-~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~~~ 658 (1024)
||++. | .+|++||++.++|+.+........|++|.. +.+..+|+|++++-+..
T Consensus 85 ~d~~~-f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-~~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 85 YHKGG-FLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-GRKATGGKLEVKVRLRE 138 (155)
T ss_pred EeCCC-cccCCCeeEEEEEEcccccccCcceEEEEhhh-CCCCcCCEEEEEEEecC
Confidence 99997 6 579999999999999987767778999974 44467899999998753
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.5e-16 Score=148.37 Aligned_cols=106 Identities=23% Similarity=0.352 Sum_probs=93.6
Q ss_pred CCeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEC---CEEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEecC
Q 001703 534 DGWVLTVALVEGVNLASSE-MTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 607 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d-~~g~~DPyv~v~~~---~~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d 607 (1024)
..+.|.|+|++|+||+.++ ..|.+||||++++. .+..+|+++++++||+|||.|.|++... ....|.|+|||++
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~ 91 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVD 91 (123)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECC
Confidence 4568999999999999998 68899999999983 4567899999999999999999996432 2458999999999
Q ss_pred CCCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
. ++++++||++.++|.++......+.|++|++
T Consensus 92 ~-~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 92 R-FSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred c-CCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 8 7889999999999999999888999999974
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=5e-16 Score=149.58 Aligned_cols=104 Identities=26% Similarity=0.371 Sum_probs=91.6
Q ss_pred CCeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEe
Q 001703 534 DGWVLTVALVEGVNLASSE-MTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFD 605 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d-~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D 605 (1024)
..+.|.|+|++|+||+..+ ..|.+||||++.+. ..+.+|+++++++||+|||+|.|.+... ....|.|+|||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d 91 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWH 91 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEe
Confidence 4568999999999999998 78899999999883 1467999999999999999999995432 24589999999
Q ss_pred cCCCCCCCccceEEEEEcccccCCCccceEEEc
Q 001703 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSL 638 (1024)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 638 (1024)
+|. ++++++||++.++|.++..+...+.||+|
T Consensus 92 ~~~-~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 92 HDR-FGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CCC-CcCCceeeEEEEecccccccCCCccEEEC
Confidence 998 79999999999999999888888999997
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-15 Score=144.88 Aligned_cols=112 Identities=23% Similarity=0.482 Sum_probs=96.0
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCC
Q 001703 4 TRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~ 77 (1024)
|.|+|+|++|++|+ .+||||++++++...+|++++++.||.|||+|.|.+. .....|.|+|||++ . .+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~-~~~~~l~~~v~d~~---~--~~ 74 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIK-DIHDVLEVTVYDED---K--DK 74 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEec-CcCCEEEEEEEECC---C--CC
Confidence 57999999999998 6899999999988899999999999999999999984 44689999999999 3 46
Q ss_pred CCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 78 SGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 78 ~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
++++||++.+++.++..+ ...||+|..+ ..+ ....|+|+|++.+
T Consensus 75 ~~~~iG~~~~~l~~~~~~-----~~~~~~l~~~-~~~--~~~~G~i~l~~~~ 118 (119)
T cd08377 75 KPEFLGKVAIPLLSIKNG-----ERKWYALKDK-KLR--TRAKGSILLEMDV 118 (119)
T ss_pred CCceeeEEEEEHHHCCCC-----CceEEECccc-CCC--CceeeEEEEEEEe
Confidence 899999999999988753 3579999833 222 4579999999876
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.65 E-value=9e-16 Score=146.81 Aligned_cols=108 Identities=27% Similarity=0.421 Sum_probs=92.9
Q ss_pred EEEEEEEeecCC------CCCcEEEEEECC---eEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCC
Q 001703 6 LYVYVLQGQDLL------AKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (1024)
Q Consensus 6 L~V~V~~Ar~L~------~~DPyv~v~l~~---~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~ 76 (1024)
|.|+|++|++|+ .+||||++++++ .++||++++++.||+|||+|.|.+.......|.|+|||.| . .
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d---~--~ 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDED---Y--V 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECC---C--C
Confidence 789999999998 689999999963 5689999999999999999999986555678999999999 3 4
Q ss_pred CCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEE
Q 001703 77 SSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLN 130 (1024)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~ 130 (1024)
++++||++.++|.++..+ .....|++|. ....|+|++.+.++
T Consensus 77 -~~~~iG~~~~~l~~l~~g---~~~~~~~~L~--------~~~~g~l~~~~~~~ 118 (119)
T cd04036 77 -MDDHLGTVLFDVSKLKLG---EKVRVTFSLN--------PQGKEELEVEFLLE 118 (119)
T ss_pred -CCcccEEEEEEHHHCCCC---CcEEEEEECC--------CCCCceEEEEEEee
Confidence 899999999999998864 3478899998 33579999888764
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.8e-16 Score=151.59 Aligned_cols=98 Identities=26% Similarity=0.512 Sum_probs=83.6
Q ss_pred EEEEEEEEeecCC----CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe---------------cCCCCe
Q 001703 5 RLYVYVLQGQDLL----AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH---------------NIDDEE 60 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~----~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~---------------~~~~~~ 60 (1024)
+|.|+|++|+||+ .+||||+|++.+ .+++|+++++++||+|||+|.|.+. +.....
T Consensus 1 kL~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T cd04010 1 KLSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLE 80 (148)
T ss_pred CEEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEE
Confidence 5899999999998 699999999975 5689999999999999999999984 123467
Q ss_pred EEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeec
Q 001703 61 LVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109 (1024)
Q Consensus 61 L~v~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~ 109 (1024)
|.|.|||++ . .++++|||++.|+|.++... ......||+|..
T Consensus 81 L~i~V~d~~---~--~~~ddfLG~v~i~l~~l~~~--~~~~~~W~~L~~ 122 (148)
T cd04010 81 LRVDLWHAS---M--GGGDVFLGEVRIPLRGLDLQ--AGSHQAWYFLQP 122 (148)
T ss_pred EEEEEEcCC---C--CCCCceeEEEEEeccccccc--CCcCcceeecCC
Confidence 999999999 3 56899999999999998874 123678999983
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.9e-16 Score=155.08 Aligned_cols=106 Identities=22% Similarity=0.338 Sum_probs=93.8
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeecC---CCCeEEEEEEe
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFD 605 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~~---~~~~L~v~V~D 605 (1024)
..|.|.|+|++|+||++.+..|.+||||++.+. ..+++|+++++++||+|||.|.|.+... ....|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 467999999999999999999999999999882 4678999999999999999999984322 23579999999
Q ss_pred cCCCCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
+|. +++|++||++.+++..+......+.|+.|.+
T Consensus 105 ~d~-~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 105 HDK-LSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred CCC-CCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 998 8999999999999999888778899999975
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.6e-16 Score=147.22 Aligned_cols=97 Identities=27% Similarity=0.545 Sum_probs=84.7
Q ss_pred CcEEEEEEEEeecCC-----CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEE-e--cCCCCeEEEEEEecC
Q 001703 3 STRLYVYVLQGQDLL-----AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRV-H--NIDDEELVVSVFQHN 69 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~-----~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v-~--~~~~~~L~v~V~d~d 69 (1024)
.+.|.|+|++|+||+ .+||||+|++.+ .++||+++++++||+|||+|.|.+ + +.....|.|+|||+|
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d 91 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD 91 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence 478999999999998 689999999962 468999999999999999999997 3 456789999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEe
Q 001703 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107 (1024)
Q Consensus 70 ~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L 107 (1024)
+ .+++++||++.++|.++... .....||+|
T Consensus 92 ---~--~~~~~~lG~~~i~l~~l~~~---~~~~~W~~L 121 (122)
T cd08381 92 ---S--LVENEFLGGVCIPLKKLDLS---QETEKWYPL 121 (122)
T ss_pred ---C--CcCCcEEEEEEEeccccccC---CCccceEEC
Confidence 4 56899999999999999864 236789987
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=145.83 Aligned_cols=102 Identities=25% Similarity=0.348 Sum_probs=91.1
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-EEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCc
Q 001703 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd 614 (1024)
|.|+|+|++|+||+..+..|.+||||++.+++ ...+|++++++.||.|||.|.|.+ ..+...|.|+|||++. +++|+
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v-~~~~~~L~v~v~d~~~-~~~d~ 78 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPV-TSPNQKITLEVMDYEK-VGKDR 78 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEe-cCCCCEEEEEEEECCC-CCCCC
Confidence 58999999999999999999999999999986 568999999999999999999984 4456799999999998 89999
Q ss_pred cceEEEEEcccccCCCccceEEEccc
Q 001703 615 SLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 615 ~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
+||++.++|.++..+ ..+.||.|-.
T Consensus 79 ~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 79 SLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred eeeEEEEeHHHhhCC-CCCceEEecC
Confidence 999999999998876 5577887765
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.2e-16 Score=147.94 Aligned_cols=101 Identities=26% Similarity=0.403 Sum_probs=87.2
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEec
Q 001703 3 STRLYVYVLQGQDLL-------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~ 68 (1024)
.+.|.|+|++|+||+ .+||||++++.. .++||+++++++||+|||+|.|.++ ......|.|.|||.
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~ 93 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHS 93 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence 578999999999997 479999999952 3679999999999999999999986 34568999999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+ + .+++++||++.|+|.++...+.......||+|.
T Consensus 94 ~---~--~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 94 R---T--LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred C---C--CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 9 4 578999999999999998765455678999983
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.2e-16 Score=150.71 Aligned_cols=93 Identities=33% Similarity=0.537 Sum_probs=85.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCcc
Q 001703 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~ 615 (1024)
|.|+|+|++|+||+..+. +.+||||++++++++.+|+++++++||+|||+|.|.+ .++...|.|+|||+|. +++|++
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i-~~~~~~l~~~V~D~d~-~~~dd~ 78 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSV-PNPMAPLKLEVFDKDT-FSKDDS 78 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEe-cCCCCEEEEEEEECCC-CCCCCE
Confidence 689999999999999997 8999999999999999999999999999999999995 4557899999999999 899999
Q ss_pred ceEEEEEcccccCCCc
Q 001703 616 LGHAEINFLKHTSTEL 631 (1024)
Q Consensus 616 lG~~~i~l~~l~~~~~ 631 (1024)
||++.+++.++.....
T Consensus 79 iG~a~i~l~~l~~~~~ 94 (145)
T cd04038 79 MGEAEIDLEPLVEAAK 94 (145)
T ss_pred EEEEEEEHHHhhhhhh
Confidence 9999999999766543
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-15 Score=145.42 Aligned_cols=109 Identities=28% Similarity=0.592 Sum_probs=95.4
Q ss_pred cEEEEEEEEeecCC------------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCC
Q 001703 4 TRLYVYVLQGQDLL------------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDD 71 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~------------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~ 71 (1024)
+.|+|+|++|+||+ .+||||++++++..++|++++++.||+|||+|.|.+.......|.|+|||++
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~-- 78 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDED-- 78 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecC--
Confidence 57999999999998 2699999999999999999999999999999999987666789999999999
Q ss_pred CCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 72 SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 72 ~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
. . ++++||++.++|.++... .....||+|. ....|+|++.++|
T Consensus 79 -~--~-~~~~iG~~~i~l~~l~~~---~~~~~w~~L~--------~~~~G~~~~~~~~ 121 (121)
T cd08391 79 -P--D-KDDFLGRLSIDLGSVEKK---GFIDEWLPLE--------DVKSGRLHLKLEW 121 (121)
T ss_pred -C--C-CCCcEEEEEEEHHHhccc---CccceEEECc--------CCCCceEEEEEeC
Confidence 3 3 889999999999998764 2368999998 3357999998865
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.64 E-value=9e-16 Score=150.07 Aligned_cols=103 Identities=23% Similarity=0.342 Sum_probs=93.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC----CEEEeeecccCCCCCeEeEEEEEEeecC---------------CCCe
Q 001703 538 LTVALVEGVNLASSEMTGLSDPYVVFTCN----GKTRTSSVQLQTCDPQWHDILEFDAMEE---------------PPSV 598 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~----~~~~kT~~~~~t~nP~WnE~f~f~~~~~---------------~~~~ 598 (1024)
|+|+|++|+||+.+ ..|.+||||+|+++ ++.++|+++.++.||.|||.|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999998 78999999999998 7889999999999999999999997544 3568
Q ss_pred EEEEEEecCCCCCCCccceEEEEEcccccCCCccceEEEccccc
Q 001703 599 LDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKL 642 (1024)
Q Consensus 599 L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 642 (1024)
|.|+|||++. ++++++||++.++|.++........||+|+++.
T Consensus 80 l~i~V~d~~~-~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASM-VSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCc-CcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 9999999998 789999999999999988777889999998854
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.8e-16 Score=148.61 Aligned_cols=89 Identities=34% Similarity=0.603 Sum_probs=82.2
Q ss_pred CCCcEEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCC
Q 001703 1 MVSTRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGL 74 (1024)
Q Consensus 1 ~~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f 74 (1024)
|.-+.|+|+|++|.||. ++||||.+.+++++.||+++.+++||+|||+|+|.+ ......|.++|||+| .
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v-~d~~~~lkv~VyD~D---~- 77 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTV-KDPNTPLKVTVYDKD---T- 77 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEe-cCCCceEEEEEEeCC---C-
Confidence 34578999999999998 799999999999999999999999999999999999 588889999999999 5
Q ss_pred CCCCCCeeEEEEEeCcccccc
Q 001703 75 FGSSGELMGRVRVPVSSIAAE 95 (1024)
Q Consensus 75 ~~~~d~~lG~~~i~L~~l~~~ 95 (1024)
.+.|||||++.|+|..+...
T Consensus 78 -fs~dD~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 78 -FSSDDFMGEATIPLKPLLEA 97 (168)
T ss_pred -CCcccccceeeeccHHHHHH
Confidence 47999999999999998864
|
|
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-15 Score=148.40 Aligned_cols=98 Identities=23% Similarity=0.415 Sum_probs=84.9
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEE-ecC
Q 001703 3 STRLYVYVLQGQDLL-------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVF-QHN 69 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~-d~d 69 (1024)
.+.|.|+|++|+||+ .+||||++++.. .++||+++++++||+|||+|.|.+. .....|.|+|| |++
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~ 106 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG 106 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence 578999999999997 479999999943 3689999999999999999999996 78899999999 566
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeec
Q 001703 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109 (1024)
Q Consensus 70 ~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~ 109 (1024)
+ ..++++||++.|+|.++.... ....||+|..
T Consensus 107 ---~--~~~~~~iG~~~i~L~~l~~~~---~~~~Wy~L~~ 138 (146)
T cd04028 107 ---R--MDKKVFMGVAQILLDDLDLSN---LVIGWYKLFP 138 (146)
T ss_pred ---C--CCCCceEEEEEEEcccccCCC---CceeEEecCC
Confidence 3 468999999999999997643 3678999983
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-15 Score=150.73 Aligned_cols=99 Identities=26% Similarity=0.504 Sum_probs=87.2
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----------------------------EEEeeecccCCCCCeEe
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----------------------------KTRTSSVQLQTCDPQWH 584 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-----------------------------~~~kT~~~~~t~nP~Wn 584 (1024)
..+.|.|+|++|+||+++|.+|.+||||+|.++. ...+|+++++++||+||
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~Wn 105 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWN 105 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccc
Confidence 5679999999999999999999999999999952 23689999999999999
Q ss_pred EEEEEEeecCCCCeEEEEEEecCCCCCCCccceEEEEEcccccCCCccceEEEc
Q 001703 585 DILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSL 638 (1024)
Q Consensus 585 E~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 638 (1024)
|+|.|.+.......|.|+|||+| |++||++.++++++.. ...+.||+|
T Consensus 106 E~F~f~v~~~~~~~L~i~V~D~d-----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 106 ETFRFEVEDVSNDQLHLDIWDHD-----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred cEEEEEeccCCCCEEEEEEEecC-----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 99999975445679999999977 6899999999999884 457999997
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-15 Score=145.67 Aligned_cols=93 Identities=22% Similarity=0.300 Sum_probs=83.0
Q ss_pred CCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEee-cCCCCeEEEEEEecCCCCC
Q 001703 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAM-EEPPSVLDVEVFDFDGPFD 611 (1024)
Q Consensus 533 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~-~~~~~~L~v~V~D~d~~~~ 611 (1024)
...+.|.|+|++|+||+. +..|.+||||+|++++++++|+++++++||+|||+|.|... ......|.|+|||+|. ++
T Consensus 25 ~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~-~s 102 (127)
T cd04032 25 RGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN-GW 102 (127)
T ss_pred CCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC-CC
Confidence 455799999999999984 67889999999999999999999999999999999999742 3456799999999999 79
Q ss_pred CCccceEEEEEccccc
Q 001703 612 QATSLGHAEINFLKHT 627 (1024)
Q Consensus 612 ~dd~lG~~~i~l~~l~ 627 (1024)
+|++||++.++|....
T Consensus 103 ~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 103 DDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCeeEEEEEEecCCc
Confidence 9999999999999654
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.3e-15 Score=141.88 Aligned_cols=116 Identities=16% Similarity=0.239 Sum_probs=97.9
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCC
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~ 76 (1024)
...|+|+|++|++|. .+||||++++++++.+|++++++.||+|||+|.|.+. .....|.|+|||++ .
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~-~~~~~l~i~V~d~~---~--- 74 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRK-KPRSPIKIQVWNSN---L--- 74 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEec-CCCCEEEEEEEECC---C---
Confidence 467999999999998 6999999999999999999999999999999999884 55789999999998 3
Q ss_pred CCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001703 77 SSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (1024)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (1024)
.+|++||++.+++..+.. ....|++|. .+..+..+...|+|.+.+.+.+
T Consensus 75 ~~d~~lG~~~~~l~~~~~-----~~~~~~~l~-~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 75 LCDEFLGQATLSADPNDS-----QTLRTLPLR-KRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CCCCceEEEEEecccCCC-----cCceEEEcc-cCCCCCCCCCCCEEEEEEEEcc
Confidence 258999999999987542 255789997 3333345788999999988754
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-15 Score=144.86 Aligned_cols=99 Identities=24% Similarity=0.409 Sum_probs=85.4
Q ss_pred CCcEEEEEEEEeecCC-------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEe
Q 001703 2 VSTRLYVYVLQGQDLL-------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQ 67 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d 67 (1024)
..+.|.|+|++|+||+ .+||||++++.. .++||+++++++||+|||+|.|.++ ......|.|.|||
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d 92 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWH 92 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 3578999999999997 589999999952 3589999999999999999999986 3456789999999
Q ss_pred cCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 68 HNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 68 ~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
++ . .+++++||++.++|.++... .....||+|+
T Consensus 93 ~~---~--~~~~~~lG~~~i~l~~~~~~---~~~~~w~~l~ 125 (125)
T cd04029 93 YD---R--FGRNTFLGEVEIPLDSWNFD---SQHEECLPLH 125 (125)
T ss_pred CC---C--CCCCcEEEEEEEeCCccccc---CCcccEEECc
Confidence 99 3 57899999999999999875 3478899984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.2e-15 Score=143.77 Aligned_cols=115 Identities=33% Similarity=0.645 Sum_probs=93.5
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCC-----
Q 001703 4 TRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDS----- 72 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~----- 72 (1024)
++|+|+|++|++|+ .+||||++++++..++|+++++++||.|||+|.|.+. .....|.|+|||+|...
T Consensus 1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~-~~~~~l~i~v~d~d~~~~~~~~ 79 (127)
T cd04027 1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECH-NSSDRIKVRVWDEDDDIKSRLK 79 (127)
T ss_pred CeEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEec-CCCCEEEEEEEECCCCcccccc
Confidence 47999999999998 6899999999988899999999999999999999984 44578999999998210
Q ss_pred -CCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEE
Q 001703 73 -GLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTI 127 (1024)
Q Consensus 73 -~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl 127 (1024)
+|..+.+++||++.+++.++... ...||.|+ ++..+ ...+|+|+|++
T Consensus 80 ~~~~~~~~~~iG~~~i~l~~~~~~-----~~~w~~L~-~~~~~--~~~~G~i~~~~ 127 (127)
T cd04027 80 QKFTRESDDFLGQTIIEVRTLSGE-----MDVWYNLE-KRTDK--SAVSGAIRLHI 127 (127)
T ss_pred eeccccCCCcceEEEEEhHHccCC-----CCeEEECc-cCCCC--CcEeEEEEEEC
Confidence 01124689999999999887532 56899999 44433 56799999874
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-15 Score=145.52 Aligned_cols=98 Identities=32% Similarity=0.491 Sum_probs=84.6
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEec
Q 001703 3 STRLYVYVLQGQDLL-------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~ 68 (1024)
.+.|.|+|++|+||+ .+||||++++.+ .++||+++++++||+|||+|.|.+. +.....|.|+|||+
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~ 93 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHR 93 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeC
Confidence 468999999999998 479999999952 3589999999999999999999986 45667999999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
| + .+++++||++.++|.++... .....||+|+
T Consensus 94 ~---~--~~~~~~iG~~~i~L~~~~~~---~~~~~W~~L~ 125 (125)
T cd08393 94 D---S--LGRNSFLGEVEVDLGSWDWS---NTQPTWYPLQ 125 (125)
T ss_pred C---C--CCCCcEeEEEEEecCccccC---CCCcceEECc
Confidence 9 3 57899999999999999765 2467899984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.7e-15 Score=143.51 Aligned_cols=116 Identities=15% Similarity=0.290 Sum_probs=97.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEE-eeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCC---C
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTR-TSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFD---Q 612 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~-kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~---~ 612 (1024)
.|.|.|++|++|++++ ||||.|.+++..+ ||+++.++.||.|||+|.|. ..++...|.|.||+.+...+ +
T Consensus 12 sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~-~~~~~~~l~v~v~k~~~~~~~~~~ 85 (146)
T cd04013 12 SLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFS-NLPPVSVITVNLYRESDKKKKKDK 85 (146)
T ss_pred EEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEec-CCCcccEEEEEEEEccCccccccC
Confidence 6899999999999876 8999999999885 99999999999999999998 44556789999986653222 6
Q ss_pred CccceEEEEEcccccCCCccceEEEccccccc---------cccceeEEEEEEec
Q 001703 613 ATSLGHAEINFLKHTSTELADMWVSLEGKLAQ---------SAQSKVHLRIFLEN 658 (1024)
Q Consensus 613 dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~---------~~~g~l~l~~~~~~ 658 (1024)
+++||++.|++..+..+...+.||+|.+..+. ...++|++++.+..
T Consensus 86 ~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 86 SQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred CcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 79999999999999999999999999874433 34578888887643
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.8e-15 Score=140.61 Aligned_cols=112 Identities=21% Similarity=0.406 Sum_probs=92.7
Q ss_pred EEEEEEEeecCC------CCCcEEEEEECCeE-EeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCC
Q 001703 6 LYVYVLQGQDLL------AKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (1024)
Q Consensus 6 L~V~V~~Ar~L~------~~DPyv~v~l~~~~-~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~ 78 (1024)
|.|+|++|++|. .+||||++++++.. .||+++++++||.|||.|.|.+. .....|.|.|||++ . .++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~-~~~~~l~v~v~d~~---~--~~~ 75 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLP-PGFHTVSFYVLDED---T--LSR 75 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeC-CCCCEEEEEEEECC---C--CCC
Confidence 899999999998 68999999998754 79999999999999999999984 44579999999999 3 578
Q ss_pred CCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEE
Q 001703 79 GELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTIS 128 (1024)
Q Consensus 79 d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~ 128 (1024)
+++||++.+++..+... ......|++|. +.... ....|+|++.++
T Consensus 76 d~~iG~~~~~~~~~~~~--~~~~~~W~~L~-~~~~~--~~~~G~i~l~~~ 120 (121)
T cd04054 76 DDVIGKVSLTREVISAH--PRGIDGWMNLT-EVDPD--EEVQGEIHLELS 120 (121)
T ss_pred CCEEEEEEEcHHHhccC--CCCCCcEEECe-eeCCC--CccccEEEEEEE
Confidence 99999999998887643 12367899998 32211 356899998875
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=142.03 Aligned_cols=113 Identities=25% Similarity=0.467 Sum_probs=97.2
Q ss_pred CCCcEEEEEEEEeecCC---C-------------CCcEEEEEECCeE-EeeecccCCCCCeEeeEEEEEEecCCCCeEEE
Q 001703 1 MVSTRLYVYVLQGQDLL---A-------------KDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNIDDEELVV 63 (1024)
Q Consensus 1 ~~~~~L~V~V~~Ar~L~---~-------------~DPyv~v~l~~~~-~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v 63 (1024)
|..+.|+|+|++|++|. . +||||++++++.+ .+|++++++.||.|||+|.|.+. ....|.|
T Consensus 1 ~~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~ 78 (132)
T cd04014 1 MFTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLEL 78 (132)
T ss_pred CcceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEE
Confidence 67789999999999997 2 6999999998765 79999999999999999999994 5688999
Q ss_pred EEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001703 64 SVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (1024)
Q Consensus 64 ~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (1024)
.|||.+ . .+.+++||++.++|.++... +......|++|+ ..|+|+|.++|..
T Consensus 79 ~v~d~~---~--~~~~~~iG~~~i~l~~l~~~-~~~~~~~w~~L~----------~~G~l~l~~~~~~ 130 (132)
T cd04014 79 TVFHDA---A--IGPDDFVANCTISFEDLIQR-GSGSFDLWVDLE----------PQGKLHVKIELKG 130 (132)
T ss_pred EEEeCC---C--CCCCceEEEEEEEhHHhccc-CCCcccEEEEcc----------CCcEEEEEEEEec
Confidence 999988 3 56889999999999998863 123468999997 3599999999865
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.5e-15 Score=141.97 Aligned_cols=114 Identities=21% Similarity=0.330 Sum_probs=93.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-------------CEEEeeecccCCCCCeE-eEEEEEEeecCCCCeEEEE
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCN-------------GKTRTSSVQLQTCDPQW-HDILEFDAMEEPPSVLDVE 602 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-------------~~~~kT~~~~~t~nP~W-nE~f~f~~~~~~~~~L~v~ 602 (1024)
..+|++++|+||+ ++..|++||||++.+. +++++|+++++++||+| ||+|.|.+. ....|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence 4689999999998 7788999999999994 24689999999999999 999999953 45689999
Q ss_pred EEecCCCCCC---CccceEEEEEcccccCC---CccceEEEccccc-cccccceeEEEE
Q 001703 603 VFDFDGPFDQ---ATSLGHAEINFLKHTST---ELADMWVSLEGKL-AQSAQSKVHLRI 654 (1024)
Q Consensus 603 V~D~d~~~~~---dd~lG~~~i~l~~l~~~---~~~~~w~~L~~~~-~~~~~g~l~l~~ 654 (1024)
|||++. .++ +++||++.++|.++..+ .....|++|+..+ ....+|+|.|++
T Consensus 79 V~D~~~-~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFA-KSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCC-CCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999875 343 79999999999998654 2356799998643 223478888876
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=145.99 Aligned_cols=116 Identities=22% Similarity=0.434 Sum_probs=96.1
Q ss_pred CcEEEEEEEEeecCCC------------------------------------CCcEEEEEECCeE-EeeecccCCCCCeE
Q 001703 3 STRLYVYVLQGQDLLA------------------------------------KDSYVKVQIGKHK-SKSRILKNNSNPVW 45 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~~------------------------------------~DPyv~v~l~~~~-~rT~v~~~t~nP~W 45 (1024)
.|.|.|+|++|++|+. +||||+|++++.+ .||++++++.||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 6889999999999971 5999999998765 79999999999999
Q ss_pred eeEEEEEEecCCCCeEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEE
Q 001703 46 NEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILL 125 (1024)
Q Consensus 46 nE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~l 125 (1024)
||+|.|.+. ...+.|.|.|||.| . . .+++||++.+|+.++..+ .....|++|.+. .++ .....|+|+|
T Consensus 86 nE~F~~~~~-~~~~~l~~~V~d~d---~--~-~~~~IG~~~i~l~~l~~g---~~~~~w~~L~~~-~~~-~~~~~~~l~v 153 (158)
T cd04015 86 NESFHIYCA-HYASHVEFTVKDND---V--V-GAQLIGRAYIPVEDLLSG---EPVEGWLPILDS-NGK-PPKPGAKIRV 153 (158)
T ss_pred ceEEEEEcc-CCCCEEEEEEEeCC---C--c-CCcEEEEEEEEhHHccCC---CCcceEEECcCC-CCC-CCCCCCEEEE
Confidence 999999984 55678999999999 3 3 568999999999998864 347899999843 222 1456799999
Q ss_pred EEEEE
Q 001703 126 TISLN 130 (1024)
Q Consensus 126 sl~~~ 130 (1024)
+++|.
T Consensus 154 ~~~f~ 158 (158)
T cd04015 154 SLQFT 158 (158)
T ss_pred EEEEC
Confidence 99983
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=4e-15 Score=138.89 Aligned_cols=95 Identities=31% Similarity=0.606 Sum_probs=85.2
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCC
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~ 78 (1024)
.|.|+|++|++|+ .+||||+++++++.++|++++++.||.|||+|.|.+..+....|.|+|||.+ .
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~--------~ 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDK--------T 72 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECC--------C
Confidence 3899999999998 6999999999999999999999999999999999997666789999999988 2
Q ss_pred CCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 79 GELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 79 d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+++||++.++|.++...+ ....+.||+|.
T Consensus 73 ~~~iG~~~i~l~~l~~~~-~~~~~~w~~L~ 101 (105)
T cd04050 73 GKSLGSLTLPLSELLKEP-DLTLDQPFPLD 101 (105)
T ss_pred CCccEEEEEEHHHhhccc-cceeeeeEecC
Confidence 789999999999998654 23478999998
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.2e-15 Score=143.80 Aligned_cols=91 Identities=23% Similarity=0.374 Sum_probs=81.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEE--EeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCc
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKT--RTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~--~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd 614 (1024)
+|+|.|++|+||++.|..|.+||||++++++.. .+|+++++++||+|||+|.|.+..+....|.|+|||+|. +++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~-~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDL-LGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCC-CCCCc
Confidence 379999999999999999999999999999765 477888999999999999999655556799999999998 78999
Q ss_pred cceEEEEEcccccC
Q 001703 615 SLGHAEINFLKHTS 628 (1024)
Q Consensus 615 ~lG~~~i~l~~l~~ 628 (1024)
+||++.++|.+...
T Consensus 80 ~iG~~~i~l~~~~~ 93 (124)
T cd04037 80 LIGETVIDLEDRFF 93 (124)
T ss_pred eeEEEEEeeccccc
Confidence 99999999997543
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.8e-15 Score=140.23 Aligned_cols=98 Identities=31% Similarity=0.586 Sum_probs=86.0
Q ss_pred EEEEEEEeecCC-------CCCcEEEEEECCeEEeeecccCCCCCeE-eeEEEEEEec--CCCCeEEEEEEecCCCCCCC
Q 001703 6 LYVYVLQGQDLL-------AKDSYVKVQIGKHKSKSRILKNNSNPVW-NEEFVFRVHN--IDDEELVVSVFQHNDDSGLF 75 (1024)
Q Consensus 6 L~V~V~~Ar~L~-------~~DPyv~v~l~~~~~rT~v~~~t~nP~W-nE~f~f~v~~--~~~~~L~v~V~d~d~~~~f~ 75 (1024)
|.|+|++|+||+ .+||||++++++.++||+++++++||.| ||+|.|.++. .....|.|+|||++ .
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d---~-- 75 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHD---T-- 75 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCC---C--
Confidence 689999999997 4799999999999999999999999999 9999999863 24579999999999 3
Q ss_pred CCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 76 GSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 76 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
.+++++||++.++|.++...++......||+|.
T Consensus 76 ~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 76 YSANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CCCCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 578999999999999998744345588999997
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.3e-15 Score=142.79 Aligned_cols=98 Identities=20% Similarity=0.419 Sum_probs=84.9
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC------CeEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEec
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIG------KHKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~------~~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~ 68 (1024)
.+.|.|+|++||||+ .+||||++++. ..++||+++++++||+|||+|.|.++ +.....|.|+|||.
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~ 92 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSV 92 (124)
T ss_pred CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeC
Confidence 578999999999998 58999999994 23689999999999999999999987 56789999999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEe
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L 107 (1024)
+ + .+++++||++.|+|.++..... ....||+|
T Consensus 93 ~---~--~~~~~~lG~~~i~L~~~~~~~~--~~~~Wy~l 124 (124)
T cd08680 93 G---P--DQQEECLGGAQISLADFESSEE--MSTKWYNL 124 (124)
T ss_pred C---C--CCceeEEEEEEEEhhhccCCCc--cccccccC
Confidence 9 4 5789999999999999976532 36779976
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.1e-15 Score=141.26 Aligned_cols=114 Identities=18% Similarity=0.356 Sum_probs=94.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCE-EEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCcc
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~ 615 (1024)
.|.|+|++|+ |...+..+.+||||+|+++++ ..+|+++++++||+|||.|.|.+. ....|.|+|||++. ++.|++
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~--~~~~l~~~V~d~~~-~~~~~~ 78 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT--PQSTLEFKVWSHHT-LKADVL 78 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC--CCCEEEEEEEeCCC-CCCCcE
Confidence 6899999999 555555889999999999987 889999999999999999999953 45799999999998 789999
Q ss_pred ceEEEEEcccccCCCc-----cceEEEccccc--cccccceeEEEE
Q 001703 616 LGHAEINFLKHTSTEL-----ADMWVSLEGKL--AQSAQSKVHLRI 654 (1024)
Q Consensus 616 lG~~~i~l~~l~~~~~-----~~~w~~L~~~~--~~~~~g~l~l~~ 654 (1024)
||++.++|.++..... ...|++|.... .....|+|++.+
T Consensus 79 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 79 LGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 9999999999765322 34589997543 234578888765
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.1e-15 Score=139.72 Aligned_cols=100 Identities=26% Similarity=0.504 Sum_probs=88.5
Q ss_pred EEEEEEEEeecCC--CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEec----CCCCeEEEEEEecCCCCCCCCCC
Q 001703 5 RLYVYVLQGQDLL--AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHN----IDDEELVVSVFQHNDDSGLFGSS 78 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~--~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~----~~~~~L~v~V~d~d~~~~f~~~~ 78 (1024)
.|+|+|++|++|. .+||||++++++++++|++++++.||.|||+|.|.+.. .....|.|+|||.+ . .++
T Consensus 5 ~l~V~v~~a~~L~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~---~--~~~ 79 (111)
T cd04011 5 QVRVRVIEARQLVGGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR---S--LRS 79 (111)
T ss_pred EEEEEEEEcccCCCCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc---c--ccc
Confidence 5899999999998 89999999999999999999999999999999999742 23578999999999 3 568
Q ss_pred CCeeEEEEEeCccccccCCCCCCCEEEEeec
Q 001703 79 GELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109 (1024)
Q Consensus 79 d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~ 109 (1024)
+++||++.++|.++...+.......|++|.+
T Consensus 80 ~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 80 DTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred CCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 9999999999999987666667889999973
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.7e-15 Score=140.74 Aligned_cols=113 Identities=19% Similarity=0.329 Sum_probs=92.2
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEEC-CeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCC
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQIG-KHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~-~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~ 77 (1024)
.|+|+|++|++|. .+||||+++++ ...++|+++++++||.|||+|.|.+.. ...|.|+|||++ . .+
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~---~--~~ 73 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQK---K--FK 73 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECC---C--CC
Confidence 3899999999998 68999999996 567999999999999999999999943 789999999999 3 33
Q ss_pred C--CCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEE
Q 001703 78 S--GELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTI 127 (1024)
Q Consensus 78 ~--d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl 127 (1024)
+ +++||++.+++.++..... ....|++|+..+. .......|+|++.+
T Consensus 74 ~~~d~~lG~~~i~l~~l~~~~~--~~~~~~~l~~~~~-~~~~~~~G~v~~~~ 122 (123)
T cd08382 74 KKDQGFLGCVRIRANAVLPLKD--TGYQRLDLRKLKK-SDNLSVRGKIVVSL 122 (123)
T ss_pred CCCCceEeEEEEEHHHccccCC--CccceeEeecCCC-CCCceEeeEEEEEe
Confidence 3 5899999999999876432 3467999974332 22355689998876
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=140.64 Aligned_cols=113 Identities=27% Similarity=0.329 Sum_probs=96.3
Q ss_pred EEEeecCC----CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEec--CCCCeEEEEEEecCCCCCCCCCCCCeeE
Q 001703 10 VLQGQDLL----AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHN--IDDEELVVSVFQHNDDSGLFGSSGELMG 83 (1024)
Q Consensus 10 V~~Ar~L~----~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~--~~~~~L~v~V~d~d~~~~f~~~~d~~lG 83 (1024)
|++|++|+ .+||||+|++++.+++|++++++.||+|||+|.|.+.. .....|.|+|||++ + .+++++||
T Consensus 2 vi~a~~L~~~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~---~--~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPGLKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYE---K--VGRNRLIG 76 (127)
T ss_pred eEEeeCCcccCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECC---C--CCCCceEE
Confidence 78999999 79999999999999999999999999999999999863 35789999999999 3 57899999
Q ss_pred EEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEecCC
Q 001703 84 RVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKGH 134 (1024)
Q Consensus 84 ~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~~ 134 (1024)
++.++|.++..+ .....|++|..... ...+|+|+++++|.+..+
T Consensus 77 ~~~~~l~~l~~~---~~~~~~~~L~~~~~----~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 77 SATVSLQDLVSE---GLLEVTEPLLDSNG----RPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEEEhhHcccC---CceEEEEeCcCCCC----CcccEEEEEEEEEeCCCC
Confidence 999999999864 33678999984332 235799999999998643
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.9e-15 Score=139.19 Aligned_cols=112 Identities=22% Similarity=0.285 Sum_probs=88.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCE-EEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEecCCCCCCCc
Q 001703 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDGPFDQAT 614 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d~~~~~dd 614 (1024)
|+|+|++|+||+.. |.+||||+++++++ .++|+++++ +||.|||+|.|.+... ....|.|.+||.+. .+++.
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~-~~~~~ 76 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS-KDRDI 76 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEeccc-CCCee
Confidence 78999999999986 79999999999975 479999988 9999999999996443 23478888888886 56666
Q ss_pred cceEEEEEcccccCCCccceEEEccccc-cccccceeEEEEEE
Q 001703 615 SLGHAEINFLKHTSTELADMWVSLEGKL-AQSAQSKVHLRIFL 656 (1024)
Q Consensus 615 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~-~~~~~g~l~l~~~~ 656 (1024)
++|++. |..+..+...+.||+|.+.. .....|+|+|.+.+
T Consensus 77 ~~g~v~--l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 77 VIGKVA--LSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEE--ecCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 666655 45555577789999998743 34458999998853
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-15 Score=147.88 Aligned_cols=104 Identities=21% Similarity=0.349 Sum_probs=89.7
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEec
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDF 606 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~ 606 (1024)
..+.|.|+|++|+||++.|..|.+||||+|.+. ..+.+|+++++++||+|||+|.|.+... ....|.|+|||+
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~ 90 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDK 90 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeC
Confidence 457999999999999999999999999999995 2467999999999999999999996433 245899999999
Q ss_pred CCCCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
|. +++|++||++.+++.. .++....|+.+..
T Consensus 91 d~-~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 91 DI-GKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred CC-CCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 98 7899999999999986 4455678998865
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-14 Score=139.71 Aligned_cols=112 Identities=22% Similarity=0.427 Sum_probs=94.3
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCe---EEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCC
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQIGKH---KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLF 75 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~---~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~ 75 (1024)
.|.|+|++|++|+ .+||||++++++. .++|+++++++||.|||+|.|.+.......|.|+|||.+ .
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d---~-- 76 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRS---F-- 76 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECC---C--
Confidence 6899999999998 6899999998643 589999999999999999999986555789999999999 3
Q ss_pred CCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001703 76 GSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (1024)
Q Consensus 76 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (1024)
.+++++||++.++|..+....+......|++|. ..|+|++.+.|..
T Consensus 77 ~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~----------~~g~i~l~~~~~~ 122 (126)
T cd04043 77 VGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD----------TQGRLLLRVSMEG 122 (126)
T ss_pred CCCCceEEEEEEecCHHHcCCCCCCceEEEEcC----------CCCeEEEEEEEee
Confidence 568999999999998875433234467899997 2599999998865
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.6e-15 Score=138.39 Aligned_cols=100 Identities=27% Similarity=0.437 Sum_probs=85.8
Q ss_pred CCCCCCcEEEEEECCE-EEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCccceEEEEEcccccC-CC
Q 001703 553 MTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTS-TE 630 (1024)
Q Consensus 553 ~~g~~DPyv~v~~~~~-~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~-~~ 630 (1024)
.+|.+||||+|+++++ ..+|++++++.||+|||.|.|.+.......|.|+|||+|. + +|++||++.++|.++.. +.
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~-~-~d~~iG~~~v~L~~l~~~~~ 86 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRD-R-HDPVLGSVSISLNDLIDATS 86 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCC-C-CCCeEEEEEecHHHHHhhhh
Confidence 4789999999999875 5799999999999999999999655556789999999998 7 89999999999999744 45
Q ss_pred ccceEEEccccccccccceeEEEEEEec
Q 001703 631 LADMWVSLEGKLAQSAQSKVHLRIFLEN 658 (1024)
Q Consensus 631 ~~~~w~~L~~~~~~~~~g~l~l~~~~~~ 658 (1024)
..+.||+|++ ..+|+|++++.+.+
T Consensus 87 ~~~~w~~L~~----~~~G~i~~~~~~~p 110 (111)
T cd04052 87 VGQQWFPLSG----NGQGRIRISALWKP 110 (111)
T ss_pred ccceeEECCC----CCCCEEEEEEEEec
Confidence 5689999986 34799999987753
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-14 Score=139.94 Aligned_cols=114 Identities=24% Similarity=0.338 Sum_probs=95.3
Q ss_pred cEEEEEEEEeecCC-------CCCcEEEEEECC--eEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCC
Q 001703 4 TRLYVYVLQGQDLL-------AKDSYVKVQIGK--HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGL 74 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~-------~~DPyv~v~l~~--~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f 74 (1024)
|.|+|+|++|++|+ .+||||++++++ ...+|++++++.||.|||+|.|.+. ...+.|.|+|||.+ .
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~---~- 76 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFN---D- 76 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecC---C-
Confidence 68999999999998 379999999987 6799999999999999999999995 66889999999999 3
Q ss_pred CCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001703 75 FGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (1024)
Q Consensus 75 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (1024)
.+++++||++.++|.++...+. ....|+.|. . . .+..|+|+++++|.|
T Consensus 77 -~~~d~~iG~~~~~l~~l~~~~~--~~~~~~~~~-~-~----~k~~G~i~~~l~~~p 124 (124)
T cd04044 77 -KRKDKLIGTAEFDLSSLLQNPE--QENLTKNLL-R-N----GKPVGELNYDLRFFP 124 (124)
T ss_pred -CCCCceeEEEEEEHHHhccCcc--ccCcchhhh-c-C----CccceEEEEEEEeCC
Confidence 4689999999999999987533 122355554 2 2 356899999999964
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.1e-15 Score=146.63 Aligned_cols=105 Identities=21% Similarity=0.317 Sum_probs=89.7
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---EEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEec
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDF 606 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~ 606 (1024)
..+.|.|+|++|+||+..|..|.+||||+|.+. + .+.+|+++++++||+|||+|.|.+... ....|.|+|||+
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~ 92 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDS 92 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEEC
Confidence 345899999999999999999999999999984 2 256899999999999999999996332 345799999999
Q ss_pred CCCCCCCccceEEEEEcccccCCCccceEEEcccc
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~ 641 (1024)
|. ++++++||++.+++.. .+.....|++|...
T Consensus 93 d~-~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~ 124 (136)
T cd08404 93 DR-VTKNEVIGRLVLGPKA--SGSGGHHWKEVCNP 124 (136)
T ss_pred CC-CCCCccEEEEEECCcC--CCchHHHHHHHHhC
Confidence 99 8999999999999998 45567889998653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=141.93 Aligned_cols=104 Identities=26% Similarity=0.405 Sum_probs=92.4
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeecC-CCCeEEEEEEecCC
Q 001703 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE-PPSVLDVEVFDFDG 608 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~~-~~~~L~v~V~D~d~ 608 (1024)
.+.|+|+|++|+||+..+..|.+||||+|.+. ...++|++++++.||.|||+|.|.+... ....|.|+|||++.
T Consensus 12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~ 91 (131)
T cd04026 12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR 91 (131)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC
Confidence 36899999999999999988999999999996 3678999999999999999999996433 35689999999998
Q ss_pred CCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 609 PFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 609 ~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
++++++||++.++|.++... ..+.||+|..
T Consensus 92 -~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 92 -TTRNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred -CCCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 78999999999999998755 6788999976
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.1e-15 Score=139.68 Aligned_cols=99 Identities=25% Similarity=0.462 Sum_probs=81.9
Q ss_pred CCcEEEEEEEEeecCC-----CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe-cCCCCeEEEEEEecCC
Q 001703 2 VSTRLYVYVLQGQDLL-----AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH-NIDDEELVVSVFQHND 70 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~-----~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~-~~~~~~L~v~V~d~d~ 70 (1024)
.++.|.|+|++||||+ .+||||++++.+ .++||++++++.||+|||+|.|.+. ......|.|+|||.+
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~- 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL- 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC-
Confidence 3678999999999998 589999999963 3579999999999999999999986 233457899999998
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEe
Q 001703 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107 (1024)
Q Consensus 71 ~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L 107 (1024)
.+ ..++++||++.|||.++..+ .....||.|
T Consensus 89 --~~-~~~~~~lG~~~i~l~~~~~~---~~~~~Wy~l 119 (119)
T cd08685 89 --SK-SRDSGLLGCMSFGVKSIVNQ---KEISGWYYL 119 (119)
T ss_pred --CC-cCCCEEEEEEEecHHHhccC---ccccceEeC
Confidence 31 23578999999999999853 346889986
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.1e-14 Score=138.02 Aligned_cols=125 Identities=17% Similarity=0.373 Sum_probs=99.1
Q ss_pred CcEEEEEEEEeecCC-CCCcEEEEEECCeE-EeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCCCC
Q 001703 3 STRLYVYVLQGQDLL-AKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGE 80 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~-~~DPyv~v~l~~~~-~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~d~ 80 (1024)
...|.|.|++|++|+ ..+|||.|.+++.. .||+++.++.||.|+|+|.|.. .+....|.|.||+.++..+ ...+++
T Consensus 10 ~~sL~v~V~EAk~Lp~~~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~-~~~~~~l~v~v~k~~~~~~-~~~~~~ 87 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKKRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSN-LPPVSVITVNLYRESDKKK-KKDKSQ 87 (146)
T ss_pred EEEEEEEEEEccCCCCcCCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecC-CCcccEEEEEEEEccCccc-cccCCc
Confidence 356999999999999 78999999999987 7999999999999999999986 3456789999987662211 112678
Q ss_pred eeEEEEEeCccccccCCCCCCCEEEEeecCCCCC-----CCCccccEEEEEEEEEec
Q 001703 81 LMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRK-----FTNKDCGKILLTISLNGK 132 (1024)
Q Consensus 81 ~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~-----~~~~~~G~I~lsl~~~~~ 132 (1024)
+||++.||+.++..+ ...+.||+|.....+. ......|.|++++.|.+.
T Consensus 88 ~IG~V~Ip~~~l~~~---~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 88 LIGTVNIPVTDVSSR---QFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred EEEEEEEEHHHhcCC---CcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 999999999999853 4589999999444321 012456899999999764
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.3e-15 Score=143.90 Aligned_cols=103 Identities=20% Similarity=0.220 Sum_probs=86.3
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---C--EEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEecC
Q 001703 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---G--KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 607 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~--~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d 607 (1024)
...|.|+|++|+||++.+..|.+||||++++. . .+.||+++++++||+|||+|.|.+... ....|.|+|||+|
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d 93 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST 93 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence 35899999999999999999999999999993 2 256899999999999999999996332 3568999999999
Q ss_pred CCCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
. ++++++||++.|.... .+...+.|..+..
T Consensus 94 ~-~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 94 E-DGKTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred C-CCCCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 8 8999999999997664 4555667776654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-14 Score=134.78 Aligned_cols=87 Identities=17% Similarity=0.289 Sum_probs=77.9
Q ss_pred cEEEEEEEEeecCC----------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEec-CCCCeEEEEEEecCCCC
Q 001703 4 TRLYVYVLQGQDLL----------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHN-IDDEELVVSVFQHNDDS 72 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~----------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~-~~~~~L~v~V~d~d~~~ 72 (1024)
|.|.|+|++|++|+ .+||||+|++++.++||+++++++||+|||+|.|.+.. .....|.|.|||+|
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d--- 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD--- 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC---
Confidence 57999999999998 17999999999889999999999999999999999863 33468999999999
Q ss_pred CCCCCCCCeeEEEEEeCcccccc
Q 001703 73 GLFGSSGELMGRVRVPVSSIAAE 95 (1024)
Q Consensus 73 ~f~~~~d~~lG~~~i~L~~l~~~ 95 (1024)
+ .++|++||++.++|.++...
T Consensus 78 ~--~~~dd~IG~~~l~L~~l~~~ 98 (108)
T cd04039 78 K--FSFNDYVATGSLSVQELLNA 98 (108)
T ss_pred C--CCCCcceEEEEEEHHHHHhh
Confidence 4 57999999999999999875
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-14 Score=141.21 Aligned_cols=103 Identities=21% Similarity=0.326 Sum_probs=84.4
Q ss_pred CCeEEEEEEEEeeCCCCCCC--CCCCCcEEEEEECC-----EEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEE
Q 001703 534 DGWVLTVALVEGVNLASSEM--TGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVF 604 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~--~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~ 604 (1024)
..+.|.|+|++|+||+++|. .+.+||||+|++.. .++||+++++++||+|||.|.|.+... ....|.|+||
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~ 92 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVL 92 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEE
Confidence 34689999999999999983 35599999999852 256899999999999999999996432 2457999999
Q ss_pred ecCCCCCCCccceEEEEEcccccCCCccceEEEcc
Q 001703 605 DFDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639 (1024)
Q Consensus 605 D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (1024)
|+|. ++++++||++.+.+.. .+.....|..+-
T Consensus 93 d~d~-~~~~d~iG~v~lg~~~--~g~~~~hW~~ml 124 (138)
T cd08407 93 NQDS-PGQSLPLGRCSLGLHT--SGTERQHWEEML 124 (138)
T ss_pred eCCC-CcCcceeceEEecCcC--CCcHHHHHHHHH
Confidence 9999 8999999999999975 444455666553
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-14 Score=141.37 Aligned_cols=93 Identities=24% Similarity=0.267 Sum_probs=82.7
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-------CEEEeeecccCCCCCeEeEEEEEEeecC----CCCeEEEEE
Q 001703 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-------GKTRTSSVQLQTCDPQWHDILEFDAMEE----PPSVLDVEV 603 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-------~~~~kT~~~~~t~nP~WnE~f~f~~~~~----~~~~L~v~V 603 (1024)
.+.|.|+|++|++|+..+..|.+||||+|++. ..+++|+++++|+||+|||+|.|.+... ....|.|+|
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V 94 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTV 94 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence 35899999999999999989999999999995 3578999999999999999999996442 345899999
Q ss_pred EecCCCCCCCccceEEEEEcccccC
Q 001703 604 FDFDGPFDQATSLGHAEINFLKHTS 628 (1024)
Q Consensus 604 ~D~d~~~~~dd~lG~~~i~l~~l~~ 628 (1024)
||+|. +++|++||++.++|.++..
T Consensus 95 ~d~d~-~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 95 KDYDL-LGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EecCC-CCCCcEeEEEEEeHHHCCc
Confidence 99998 7889999999999999764
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.6e-14 Score=137.61 Aligned_cols=115 Identities=22% Similarity=0.314 Sum_probs=97.1
Q ss_pred EEEEEEEEeeCCCCCC--CCCCCCcEEEEEE------CCEEEeeecccCCC-CCeEeEEEEEEeecCCCCeEEEEEEecC
Q 001703 537 VLTVALVEGVNLASSE--MTGLSDPYVVFTC------NGKTRTSSVQLQTC-DPQWHDILEFDAMEEPPSVLDVEVFDFD 607 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d--~~g~~DPyv~v~~------~~~~~kT~~~~~t~-nP~WnE~f~f~~~~~~~~~L~v~V~D~d 607 (1024)
.|+|+|++|+||+..+ ..+.+||||++++ ...+++|+++.++. ||+|||+|.|.+.......|.|+|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999988 5889999999999 34668999987765 9999999999976554568999999999
Q ss_pred CCCCCCccceEEEEEcccccCCCccceEEEccccccc-cccceeEEEEEE
Q 001703 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQ-SAQSKVHLRIFL 656 (1024)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~g~l~l~~~~ 656 (1024)
. + ++++||++.++|.++..+ ..|++|..+.+. ...|.|.+++++
T Consensus 83 ~-~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 S-G-DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred C-C-CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 8 6 899999999999998554 468999875554 567899988875
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-14 Score=141.80 Aligned_cols=99 Identities=24% Similarity=0.416 Sum_probs=85.8
Q ss_pred EEEEEEEEeecCC-----C---------------CCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEe-cCCCCeEEE
Q 001703 5 RLYVYVLQGQDLL-----A---------------KDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVH-NIDDEELVV 63 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~-----~---------------~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~-~~~~~~L~v 63 (1024)
.|.|+|++|++|+ . +||||+|.+++.+.+|+++++++||+|||+|.|.+. ......|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 4899999999999 1 699999999999999999999999999999999975 345679999
Q ss_pred EEEecCCCCCCCCCCCCeeEEEEEeCccccccCCC----CCCCEEEEee
Q 001703 64 SVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNH----MLPPTWFSLE 108 (1024)
Q Consensus 64 ~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~----~~~~~W~~L~ 108 (1024)
+|||+| ..++|++||++.++|.++...+.. ...++|+.|.
T Consensus 81 ~v~D~d-----~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~ly 124 (151)
T cd04018 81 QIRDWD-----RVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLY 124 (151)
T ss_pred EEEECC-----CCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEee
Confidence 999999 357999999999999998775321 2467999998
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-14 Score=139.13 Aligned_cols=99 Identities=22% Similarity=0.279 Sum_probs=87.5
Q ss_pred EEEEeeCCCCCCCCCCCCcEEEEEECCE-------EEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCC---CC
Q 001703 541 ALVEGVNLASSEMTGLSDPYVVFTCNGK-------TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDG---PF 610 (1024)
Q Consensus 541 ~vi~a~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~---~~ 610 (1024)
-.++|++|+..+..|.+||||+|++.+. .++|+++++++||+|||+|.|.+..+....|.|+|||+|. .+
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 3589999999999999999999999754 4899999999999999999998655566789999999995 14
Q ss_pred CCCccceEEEEEcccccCCCccceEEEcc
Q 001703 611 DQATSLGHAEINFLKHTSTELADMWVSLE 639 (1024)
Q Consensus 611 ~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (1024)
++|++||++.+++.++..+.....|++|.
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 79999999999999998888888999994
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.7e-14 Score=138.12 Aligned_cols=100 Identities=27% Similarity=0.457 Sum_probs=84.1
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEEC---CeEEeeecccCCCCCeEeeEEEEE-Ee--cCCCCeEEEEEEecC
Q 001703 3 STRLYVYVLQGQDLL-------AKDSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFR-VH--NIDDEELVVSVFQHN 69 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~---~~~~rT~v~~~t~nP~WnE~f~f~-v~--~~~~~~L~v~V~d~d 69 (1024)
.++|.|+|++|+||+ .+||||++++. +++.||+++++++||+|||+|.|. ++ +.....|.|.|||+|
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d 94 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD 94 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence 578999999999998 46999999995 345799999999999999999994 54 334568999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 70 ~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+ .+++++||++.++|.++...++ .....|.+|+
T Consensus 95 ---~--~~~d~~lG~~~i~L~~l~~~~~-~~~~~~~~~~ 127 (128)
T cd08388 95 ---R--YSRDDVIGEVVCPLAGADLLNE-GELLVSREIQ 127 (128)
T ss_pred ---C--CCCCceeEEEEEeccccCCCCC-ceEEEEEecc
Confidence 4 5789999999999999987533 2377899886
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-14 Score=137.89 Aligned_cols=98 Identities=27% Similarity=0.465 Sum_probs=85.3
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC---CeEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEecCCC
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDD 71 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~---~~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~d~~ 71 (1024)
.+.|.|+|++|+||+ .+||||++++. ...++|++++++.||+|||+|.|.++ ......|.|+|||++
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~-- 92 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFD-- 92 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECC--
Confidence 578999999999998 68999999994 34589999999999999999999986 334678999999999
Q ss_pred CCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 72 SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 72 ~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
. .+++++||++.++|.++...+ ....||+|+
T Consensus 93 -~--~~~~~~iG~~~i~l~~~~~~~---~~~~W~~l~ 123 (124)
T cd08387 93 -Q--FSRDECIGVVELPLAEVDLSE---KLDLWRKIQ 123 (124)
T ss_pred -C--CCCCceeEEEEEecccccCCC---CcceEEECc
Confidence 3 578999999999999998753 468899986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.4e-14 Score=136.97 Aligned_cols=99 Identities=34% Similarity=0.582 Sum_probs=84.9
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEECC---eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEecCC
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHND 70 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~---~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~d~ 70 (1024)
..+.|.|+|++|+||+ .+||||++++.+ .+++|+++++++||+|||+|.|.++ ......|.|+|||++
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d- 92 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFD- 92 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC-
Confidence 3578999999999998 689999999953 4589999999999999999999985 234678999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 71 ~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+ .+++++||++.++|.++..+ .....|++|+
T Consensus 93 --~--~~~~~~lG~~~i~l~~~~~~---~~~~~W~~l~ 123 (124)
T cd08385 93 --R--FSKHDLIGEVRVPLLTVDLG---HVTEEWRDLE 123 (124)
T ss_pred --C--CCCCceeEEEEEecCcccCC---CCcceEEEcc
Confidence 4 46899999999999998763 3477899986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.8e-15 Score=143.46 Aligned_cols=105 Identities=20% Similarity=0.340 Sum_probs=88.6
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---EEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEec
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDF 606 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~ 606 (1024)
..+.|.|+|++|+||+..+..|.+||||+|++. + .+.+|+++++++||+|||+|.|.+... ....|.|+|||+
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~ 92 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDK 92 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEEC
Confidence 456899999999999999999999999999983 2 357899999999999999999996422 245899999999
Q ss_pred CCCCCCCccceEEEEEcccccCCCccceEEEcccc
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~ 641 (1024)
|. +++|++||++.+++... +.....|+.+-..
T Consensus 93 ~~-~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~ 124 (136)
T cd08405 93 DR-LSRNDLIGKIYLGWKSG--GLELKHWKDMLSK 124 (136)
T ss_pred CC-CCCCcEeEEEEECCccC--CchHHHHHHHHhC
Confidence 98 89999999999999875 4556677777553
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.4e-14 Score=137.20 Aligned_cols=98 Identities=28% Similarity=0.574 Sum_probs=82.2
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe---cCCCCeEEEEEEe
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQ 67 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~---~~~~~~L~v~V~d 67 (1024)
..++|.|+|++|+||+ .+||||+|++.+ .+++|++++++.||+|||+|.|.+. +.....|.|+|||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d 93 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence 3588999999999998 689999999964 4689999999999999999999853 2356889999999
Q ss_pred cCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 68 HNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 68 ~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
++ + .+++++||++.++|.+.... ....||+|+
T Consensus 94 ~~---~--~~~~~~iG~~~i~l~~~~~~----~~~~W~~L~ 125 (125)
T cd04031 94 YD---R--DGENDFLGEVVIDLADALLD----DEPHWYPLQ 125 (125)
T ss_pred CC---C--CCCCcEeeEEEEeccccccc----CCcceEECc
Confidence 99 3 56899999999999983322 246899985
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.7e-14 Score=136.63 Aligned_cols=100 Identities=26% Similarity=0.461 Sum_probs=84.7
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC-----CeEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEecC
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~-----~~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~d 69 (1024)
.+.|.|+|++|+||+ .+||||++++. ..+++|++++++.||+|||+|.|.+. ......|.|.|||.+
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~ 94 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSK 94 (127)
T ss_pred CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECC
Confidence 478999999999998 68999999995 35689999999999999999999986 345679999999998
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 70 ~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
.+..+++++||++.++|.++... .....||+|+
T Consensus 95 ---~~~~~~~~~iG~~~i~l~~l~~~---~~~~~W~~L~ 127 (127)
T cd04030 95 ---SFLSREKKLLGQVLIDLSDLDLS---KGFTQWYDLT 127 (127)
T ss_pred ---cccCCCCceEEEEEEeccccccc---CCccceEECc
Confidence 32126899999999999998764 3468899984
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.1e-15 Score=143.72 Aligned_cols=104 Identities=25% Similarity=0.432 Sum_probs=87.9
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---EEEeeecccCCCCCeEeEEEEEEeecCC--CCeEEEEEEec
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEEP--PSVLDVEVFDF 606 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~t~nP~WnE~f~f~~~~~~--~~~L~v~V~D~ 606 (1024)
..+.|.|+|++|+||+.++..|.+||||+|++. + .+++|+++++++||+|||+|.|.+.... ...|.|+|||+
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~ 92 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDY 92 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeC
Confidence 456899999999999999999999999999994 2 3568999999999999999999964322 34799999999
Q ss_pred CCCCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
|. +++|++||++.|++.. .+.....|+++-.
T Consensus 93 ~~-~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~ 123 (136)
T cd08402 93 DR-IGKNDPIGKVVLGCNA--TGAELRHWSDMLA 123 (136)
T ss_pred CC-CCCCceeEEEEECCcc--CChHHHHHHHHHh
Confidence 98 8999999999999976 3455677887754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.7e-14 Score=136.39 Aligned_cols=97 Identities=28% Similarity=0.498 Sum_probs=83.9
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC---CeEEeeecccCCCCCeEeeEEEEE-Ee--cCCCCeEEEEEEecCC
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFR-VH--NIDDEELVVSVFQHND 70 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~---~~~~rT~v~~~t~nP~WnE~f~f~-v~--~~~~~~L~v~V~d~d~ 70 (1024)
.++|.|+|++|+||+ .+||||++.+. ..+.||+++++ +||+|||+|.|. +. ......|.|.|||++
T Consensus 15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~- 92 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVE- 92 (124)
T ss_pred CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECC-
Confidence 578999999999998 68999998884 35689999888 999999999998 65 456789999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 71 ~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+ .+++++||++.|+|.++... .....|++|+
T Consensus 93 --~--~~~~~~lG~~~i~L~~l~~~---~~~~~w~~L~ 123 (124)
T cd08389 93 --R--MRKERLIGEKVVPLSQLNLE---GETTVWLTLE 123 (124)
T ss_pred --C--cccCceEEEEEEeccccCCC---CCceEEEeCC
Confidence 4 57899999999999999764 3478899997
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-13 Score=128.86 Aligned_cols=94 Identities=17% Similarity=0.335 Sum_probs=75.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEec------
Q 001703 538 LTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDF------ 606 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~------ 606 (1024)
|.|+|++|+||+ |.+||||++.++ ..+.+|+++++|+||+|||+|+|++ . ....|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l-~-~s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIEL-E-GSQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEe-C-CCCEEEEEEEEccccccc
Confidence 579999999995 468999999885 2468999999999999999999995 3 467999999998
Q ss_pred -CCCCCCCccceEEEEEccc--ccCCCccceEEEcc
Q 001703 607 -DGPFDQATSLGHAEINFLK--HTSTELADMWVSLE 639 (1024)
Q Consensus 607 -d~~~~~dd~lG~~~i~l~~--l~~~~~~~~w~~L~ 639 (1024)
|. .++|++||++.+.|.. +........-+.|.
T Consensus 74 ~d~-~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~ 108 (118)
T cd08686 74 LDG-EGTDAIMGKGQIQLDPQSLQTKKWQEKVISMN 108 (118)
T ss_pred ccc-cCcccEEEEEEEEECHHHhccCCeeEEEEEec
Confidence 56 6889999999888865 33333334445553
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-14 Score=134.29 Aligned_cols=94 Identities=23% Similarity=0.467 Sum_probs=80.6
Q ss_pred cEEEEEEEEeecCC-------CCCcEEEEEECC---eEEeeecccCCCCCeEeeEEEEEEecC---CCCeEEEEEEecCC
Q 001703 4 TRLYVYVLQGQDLL-------AKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVFRVHNI---DDEELVVSVFQHND 70 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~-------~~DPyv~v~l~~---~~~rT~v~~~t~nP~WnE~f~f~v~~~---~~~~L~v~V~d~d~ 70 (1024)
|.|+|+|++|++|+ .+||||+|++.+ ...+|+++++++||+|||+|.|.+... ....|.|+|||+|
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d- 79 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD- 79 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCC-
Confidence 57999999999998 579999999943 458999999999999999999987532 4578999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 71 ~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+ .++|++||++.++|.++... ..|+++.
T Consensus 80 --~--~~~dd~lG~~~i~l~~l~~~------~~~~~~~ 107 (111)
T cd04041 80 --R--FTADDRLGRVEIDLKELIED------RNWMGRR 107 (111)
T ss_pred --C--CCCCCcceEEEEEHHHHhcC------CCCCccc
Confidence 4 57899999999999999853 4588876
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-14 Score=142.07 Aligned_cols=106 Identities=20% Similarity=0.276 Sum_probs=85.9
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---EEEeeecccCCCCCeEeEEEEEEeecCC--CCeEEEEEEec
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEEP--PSVLDVEVFDF 606 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~t~nP~WnE~f~f~~~~~~--~~~L~v~V~D~ 606 (1024)
..+.|.|+|++|+||+..|..|.+||||++.+. + ++++|+++++|+||+|||+|.|.+.... ...|.|+|||+
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~ 91 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGH 91 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeC
Confidence 456899999999999999999999999999973 2 3579999999999999999999963322 33699999999
Q ss_pred CCCCCCCccceEEEEEcccccCCCccceEEEcccc
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~ 641 (1024)
|. .+++++||++.|....... ...+.|+.|...
T Consensus 92 d~-~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~~ 124 (135)
T cd08410 92 NV-KSSNDFIGRIVIGQYSSGP-SETNHWRRMLNS 124 (135)
T ss_pred CC-CCCCcEEEEEEEcCccCCc-hHHHHHHHHHhC
Confidence 98 7999999999866533222 235778888653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.8e-14 Score=136.85 Aligned_cols=111 Identities=24% Similarity=0.424 Sum_probs=92.2
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECC-eEEeeeccc-CCCCCeEeeEEEEEEecC----CCCeEEEEEEecCCCC
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQIGK-HKSKSRILK-NNSNPVWNEEFVFRVHNI----DDEELVVSVFQHNDDS 72 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~-~~~rT~v~~-~t~nP~WnE~f~f~v~~~----~~~~L~v~V~d~d~~~ 72 (1024)
+|+|+|++|++|+ .+||||+|++++ .+++|+++. ++.||.|||+|.|.+... ....|.|+|||.+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~--- 77 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER--- 77 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC---
Confidence 4899999999999 689999999988 789999986 589999999999998643 2689999999999
Q ss_pred CCCCCCCCeeEEEEEeCccccccCCC--CCCCEEEEeecCCCCCCCCccccEEEE
Q 001703 73 GLFGSSGELMGRVRVPVSSIAAEDNH--MLPPTWFSLETPKTRKFTNKDCGKILL 125 (1024)
Q Consensus 73 ~f~~~~d~~lG~~~i~L~~l~~~~~~--~~~~~W~~L~~~~~~~~~~~~~G~I~l 125 (1024)
. .+++++||++.++|.++...... .....||.|.++. .+..|.|++
T Consensus 78 ~--~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~-----g~~~G~~~~ 125 (125)
T cd04051 78 P--SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS-----GKPQGVLNF 125 (125)
T ss_pred C--CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC-----CCcCeEEeC
Confidence 3 46899999999999999876432 2457899999433 457888764
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.7e-14 Score=166.73 Aligned_cols=103 Identities=21% Similarity=0.342 Sum_probs=88.2
Q ss_pred CCCCcEEEEEECCE-EEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCccceEEEEEcccccCCCccc
Q 001703 555 GLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELAD 633 (1024)
Q Consensus 555 g~~DPyv~v~~~~~-~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~ 633 (1024)
++|||||+|.++++ ..||+++++++||+|||+|.|.+ .++...|.|+|||+|. ++ +++||++.|||.++..+...+
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~v-ah~~s~L~f~VkD~D~-~g-aD~IG~a~IPL~~L~~Ge~vd 151 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISI-AHPFAYLEFQVKDDDV-FG-AQIIGTAKIPVRDIASGERIS 151 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEe-cCCCceEEEEEEcCCc-cC-CceeEEEEEEHHHcCCCCceE
Confidence 47899999999875 56999999999999999999995 4567799999999998 76 589999999999999999999
Q ss_pred eEEEccccccccc--cceeEEEEEEeccC
Q 001703 634 MWVSLEGKLAQSA--QSKVHLRIFLENNN 660 (1024)
Q Consensus 634 ~w~~L~~~~~~~~--~g~l~l~~~~~~~~ 660 (1024)
.|++|.+..++.. .++|+|++.+.+..
T Consensus 152 ~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~ 180 (868)
T PLN03008 152 GWFPVLGASGKPPKAETAIFIDMKFTPFD 180 (868)
T ss_pred EEEEccccCCCCCCCCcEEEEEEEEEEcc
Confidence 9999987655443 56899998765443
|
|
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-14 Score=141.04 Aligned_cols=104 Identities=26% Similarity=0.440 Sum_probs=86.9
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---EEEeeecccCCCCCeEeEEEEEEeecCC--CCeEEEEEEec
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEEP--PSVLDVEVFDF 606 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~t~nP~WnE~f~f~~~~~~--~~~L~v~V~D~ 606 (1024)
..+.|+|+|++|++|++++..|.+||||+|.+. + .+.+|+++++++||.|||+|.|.+.... ...|.|+|||+
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~ 91 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDY 91 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence 356899999999999999999999999999984 2 3578999999999999999999864322 24699999999
Q ss_pred CCCCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
|. ++++++||++.|++.. .+.....|+.+-.
T Consensus 92 ~~-~~~~~~IG~~~l~~~~--~~~~~~~w~~~~~ 122 (134)
T cd08403 92 DR-VGHNELIGVCRVGPNA--DGQGREHWNEMLA 122 (134)
T ss_pred CC-CCCCceeEEEEECCCC--CCchHHHHHHHHH
Confidence 98 7999999999999873 3445677887754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.3e-14 Score=135.94 Aligned_cols=84 Identities=27% Similarity=0.487 Sum_probs=73.6
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEecC
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~d 69 (1024)
.++|.|+|++|+||+ .+||||+|++.. .+.||+++++++||+|||+|.|.++ ......|.|+|||+|
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d 93 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST 93 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence 568999999999998 689999999942 2578999999999999999999987 467789999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCcc
Q 001703 70 DDSGLFGSSGELMGRVRVPVSS 91 (1024)
Q Consensus 70 ~~~~f~~~~d~~lG~~~i~L~~ 91 (1024)
+ .+++++||++.|+...
T Consensus 94 ---~--~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 94 ---E--DGKTPNVGHVIIGPAA 110 (136)
T ss_pred ---C--CCCCCeeEEEEECCCC
Confidence 4 5789999999997654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.6e-14 Score=134.49 Aligned_cols=104 Identities=13% Similarity=0.171 Sum_probs=83.2
Q ss_pred CCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CEEEeeecccCCC-CCeEeEEEEEEeecCC-CCeEEEEEEe
Q 001703 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTC-DPQWHDILEFDAMEEP-PSVLDVEVFD 605 (1024)
Q Consensus 533 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~-nP~WnE~f~f~~~~~~-~~~L~v~V~D 605 (1024)
...+.|+|.|++|+||++++..+.+||||+|.+- -.++||+++++|+ ||+|||+|.|++..+. ...|.|+|||
T Consensus 11 p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d 90 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYS 90 (135)
T ss_pred CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEe
Confidence 4567999999999999998667788999999883 2467999999996 6999999999975432 3378999999
Q ss_pred cCCCCCCCccceEEEEEcccccCCCccceEEEc
Q 001703 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSL 638 (1024)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 638 (1024)
+|. .+++++||++.+..... .+...+.|...
T Consensus 91 ~~~-~~~n~~IG~v~lG~~~~-~~~~~~hW~~m 121 (135)
T cd08692 91 RSS-VRRKHFLGQVWISSDSS-SSEAVEQWKDT 121 (135)
T ss_pred CCC-CcCCceEEEEEECCccC-CchhhhhHHHH
Confidence 998 79999999999999763 22234566554
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.6e-14 Score=139.80 Aligned_cols=105 Identities=27% Similarity=0.383 Sum_probs=91.6
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----EEEeeecccCCCCCeEeEEEEEEeecCC--CCeEEEEEEec
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEEP--PSVLDVEVFDF 606 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~WnE~f~f~~~~~~--~~~L~v~V~D~ 606 (1024)
..+.|.|+|++|+||+..+..+.+||||++++.. .+.+|+++.++.||.|||+|.|.+.... ...|.|+|||.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~ 91 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK 91 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence 3468999999999999999899999999999853 2569999999999999999999964432 56899999999
Q ss_pred CCCCCCCccceEEEEEcccccCCCccceEEEcccc
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~ 641 (1024)
+. ++++++||++.+++.+ .+...+.|++|...
T Consensus 92 ~~-~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 92 DS-VGRNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred CC-CCCCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 98 7899999999999999 66678899999764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.7e-14 Score=133.62 Aligned_cols=98 Identities=27% Similarity=0.520 Sum_probs=83.6
Q ss_pred CCcEEEEEEEEeecCC-------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEe
Q 001703 2 VSTRLYVYVLQGQDLL-------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQ 67 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d 67 (1024)
..+.|.|+|++|+||+ .+||||++++.+ .+++|++++++.||+|||+|.|.+. ......|.|.|||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d 91 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWH 91 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEe
Confidence 3678999999999997 579999999842 4589999999999999999999986 2346789999999
Q ss_pred cCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEe
Q 001703 68 HNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107 (1024)
Q Consensus 68 ~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L 107 (1024)
.+ + .+++++||++.++|.++...+ ....||+|
T Consensus 92 ~~---~--~~~~~~iG~~~i~l~~l~~~~---~~~~w~~l 123 (123)
T cd08521 92 HD---R--FGRNTFLGEVEIPLDSWDLDS---QQSEWYPL 123 (123)
T ss_pred CC---C--CcCCceeeEEEEecccccccC---CCccEEEC
Confidence 99 3 578999999999999997542 36889987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.1e-14 Score=134.14 Aligned_cols=103 Identities=22% Similarity=0.365 Sum_probs=87.6
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeecC---CCCeEEEEEEe
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFD 605 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~~---~~~~L~v~V~D 605 (1024)
..+.|.|+|++|++|++.+..|.+||||++.+. ....+|+++++++||+|||.|.|..... ....|.|+|||
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d 92 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLD 92 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence 356899999999999999988999999999983 3468999999999999999999963322 24689999999
Q ss_pred cCCCCCCCccceEEEEEcccccCCCccceEEEc
Q 001703 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSL 638 (1024)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 638 (1024)
++. + .+++||++.++|+++..++....|+.|
T Consensus 93 ~~~-~-~~~~iG~~~i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 93 EDR-F-GNDFLGETRIPLKKLKPNQTKQFNICL 123 (123)
T ss_pred cCC-c-CCeeEEEEEEEcccCCCCcceEeeccC
Confidence 998 7 889999999999999887766666543
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=132.50 Aligned_cols=115 Identities=24% Similarity=0.405 Sum_probs=92.6
Q ss_pred EEEEEEEeecCC-----CCCcEEEEEECC-------------eEEeeecccCCCCCeE-eeEEEEEEecCCCCeEEEEEE
Q 001703 6 LYVYVLQGQDLL-----AKDSYVKVQIGK-------------HKSKSRILKNNSNPVW-NEEFVFRVHNIDDEELVVSVF 66 (1024)
Q Consensus 6 L~V~V~~Ar~L~-----~~DPyv~v~l~~-------------~~~rT~v~~~t~nP~W-nE~f~f~v~~~~~~~L~v~V~ 66 (1024)
..|++++|+||+ .+||||++++.. ++++|+++++++||+| ||+|.|.+. ....|.|+||
T Consensus 3 ~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~V~ 80 (137)
T cd08691 3 FSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIEVK 80 (137)
T ss_pred EEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEEEE
Confidence 578999999998 799999999942 3689999999999999 999999983 4568999999
Q ss_pred ecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEE
Q 001703 67 QHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTI 127 (1024)
Q Consensus 67 d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl 127 (1024)
|++...+ ...+++||++.+||.++...+.......||+|+ .++. .+...|+|.+.+
T Consensus 81 D~~~~~~--~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~-k~~~--~s~v~G~~~l~~ 136 (137)
T cd08691 81 DKFAKSR--PIIRRFLGKLSIPVQRLLERHAIGDQELSYTLG-RRTP--TDHVSGQLTFRF 136 (137)
T ss_pred ecCCCCC--ccCCceEEEEEEEHHHhcccccCCceEEEEECC-cCCC--CCcEEEEEEEEe
Confidence 9871110 112799999999999998765555577899998 4443 367889998865
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.8e-14 Score=136.04 Aligned_cols=97 Identities=25% Similarity=0.502 Sum_probs=84.3
Q ss_pred EEEEEEEeecCC-----CCCcEEEEEEC----CeEEeeecccCCCCCeEeeEEEEEEecC---------------CCCeE
Q 001703 6 LYVYVLQGQDLL-----AKDSYVKVQIG----KHKSKSRILKNNSNPVWNEEFVFRVHNI---------------DDEEL 61 (1024)
Q Consensus 6 L~V~V~~Ar~L~-----~~DPyv~v~l~----~~~~rT~v~~~t~nP~WnE~f~f~v~~~---------------~~~~L 61 (1024)
|+|+|++|++|+ .+||||+|+++ ...++|++++++.||.|||+|.|.+... ....|
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 689999999997 68999999998 6779999999999999999999997643 46789
Q ss_pred EEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecC
Q 001703 62 VVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110 (1024)
Q Consensus 62 ~v~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~ 110 (1024)
.|+|||.+ . .++++|||++.++|.++... .....||+|...
T Consensus 81 ~i~V~d~~---~--~~~~~~IG~~~i~l~~l~~~---~~~~~W~~L~~~ 121 (137)
T cd08675 81 RVELWHAS---M--VSGDDFLGEVRIPLQGLQQA---GSHQAWYFLQPR 121 (137)
T ss_pred EEEEEcCC---c--CcCCcEEEEEEEehhhccCC---CcccceEecCCc
Confidence 99999999 3 46899999999999998753 346889999843
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.9e-14 Score=135.22 Aligned_cols=85 Identities=25% Similarity=0.458 Sum_probs=74.4
Q ss_pred CCcEEEEEEEEeecCC--------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEE
Q 001703 2 VSTRLYVYVLQGQDLL--------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVF 66 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~--------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~ 66 (1024)
..++|.|.|++|+||. .+||||+|++.. .++||+++++++||+|||+|.|.++ ......|.|+||
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~ 92 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVL 92 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEE
Confidence 3578999999999998 279999999954 2579999999999999999999997 456788999999
Q ss_pred ecCCCCCCCCCCCCeeEEEEEeCcc
Q 001703 67 QHNDDSGLFGSSGELMGRVRVPVSS 91 (1024)
Q Consensus 67 d~d~~~~f~~~~d~~lG~~~i~L~~ 91 (1024)
|+| + .+++++||++.+++..
T Consensus 93 d~d---~--~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 93 NQD---S--PGQSLPLGRCSLGLHT 112 (138)
T ss_pred eCC---C--CcCcceeceEEecCcC
Confidence 999 4 5799999999999865
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-13 Score=132.90 Aligned_cols=98 Identities=26% Similarity=0.493 Sum_probs=84.0
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC---CeEEeeecccCCCCCeEeeEEEEEE-e--cCCCCeEEEEEEecCC
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFRV-H--NIDDEELVVSVFQHND 70 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~---~~~~rT~v~~~t~nP~WnE~f~f~v-~--~~~~~~L~v~V~d~d~ 70 (1024)
.+.|.|+|++|+||+ .+||||++++. ..+.+|++++++.||.|||+|.|.+ + ......|.|+|||++
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d- 93 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD- 93 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCC-
Confidence 578999999999997 68999999993 4568999999999999999999984 2 234578999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 71 ~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+ .+++++||++.++|.++... .....|+.|.
T Consensus 94 --~--~~~~~~iG~~~i~l~~l~~~---~~~~~W~~l~ 124 (125)
T cd08386 94 --R--FSRNDPIGEVSLPLNKVDLT---EEQTFWKDLK 124 (125)
T ss_pred --C--CcCCcEeeEEEEecccccCC---CCcceEEecC
Confidence 4 56899999999999999864 3478899986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.3e-14 Score=181.26 Aligned_cols=121 Identities=17% Similarity=0.235 Sum_probs=101.0
Q ss_pred CCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCE-EEeeecccCCCCCeEeEEEEEEeecCC-CCeEEEEEEecCCCC
Q 001703 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEP-PSVLDVEVFDFDGPF 610 (1024)
Q Consensus 533 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~~~~~t~nP~WnE~f~f~~~~~~-~~~L~v~V~D~d~~~ 610 (1024)
.-.|.|+|+|++|.||. +..|.+||||++++|++ ++||++++++.||+|||+|+|.+..++ ...|+|+|||+|. |
T Consensus 1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~-f 2053 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT-F 2053 (2102)
T ss_pred hCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc-c
Confidence 45689999999999998 44899999999999954 889999999999999999998854443 3579999999998 8
Q ss_pred CCCccceEEEEEcccccCCCccceEEEcccccccccc-ceeEEEEEEe
Q 001703 611 DQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQ-SKVHLRIFLE 657 (1024)
Q Consensus 611 ~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~-g~l~l~~~~~ 657 (1024)
++| .||.++|+|.++..++....||+|.+++.+.++ -.|++.+.++
T Consensus 2054 ~kd-~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2054 GKS-SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred CCC-CCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEec
Confidence 555 999999999999999999999999975443322 3388777554
|
|
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-13 Score=129.79 Aligned_cols=110 Identities=21% Similarity=0.392 Sum_probs=84.7
Q ss_pred EEEEEEEeecCC---CCCcEEEEEECCeE-EeeecccCCCCCeEeeEEEEEEecC--CCCeEEEEEEecCCCCCCCCCCC
Q 001703 6 LYVYVLQGQDLL---AKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNI--DDEELVVSVFQHNDDSGLFGSSG 79 (1024)
Q Consensus 6 L~V~V~~Ar~L~---~~DPyv~v~l~~~~-~rT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V~d~d~~~~f~~~~d 79 (1024)
|+|+|++|+||+ .+||||.+++++.+ ++|+++++ .||.|||+|.|.++.. ....|.|.+||.+ . ...+
T Consensus 2 L~v~vi~a~~l~~~~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~---~--~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSKGTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKR---S--KDRD 75 (117)
T ss_pred eEEEEEEecCCCcCCCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecc---c--CCCe
Confidence 889999999998 79999999998754 89999999 9999999999998532 3457778888877 2 3456
Q ss_pred CeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 80 ELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 80 ~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
.++|++.+. .+..+ .....||+|. +...+ ....|+|+|.+.|
T Consensus 76 ~~~g~v~l~--~~~~~---~~~~~w~~L~-~~~~~--~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGKVALS--KLDLG---QGKDEWFPLT-PVDPD--SEVQGSVRLRARY 117 (117)
T ss_pred eEEEEEEec--CcCCC---CcceeEEECc-cCCCC--CCcCceEEEEEEC
Confidence 677776554 44332 2367899998 44322 4578999999876
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.2e-14 Score=139.18 Aligned_cols=105 Identities=18% Similarity=0.299 Sum_probs=87.2
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---C---EEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEe
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---G---KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFD 605 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~---~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D 605 (1024)
..+.|.|+|++|+||++++..|.+||||++.+. + .+++|+++++++||+|||+|.|++... ....|.|+|||
T Consensus 13 ~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~ 92 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYN 92 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEE
Confidence 456899999999999999999999999999994 2 256999999999999999999996432 34589999999
Q ss_pred cCCCCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
+|. ++++++||++.+++..... .....|+.+..
T Consensus 93 ~~~-~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~ 125 (138)
T cd08408 93 KRK-MKRKEMIGWFSLGLNSSGE-EEEEHWNEMKE 125 (138)
T ss_pred CCC-CCCCcEEEEEEECCcCCCc-hHHHHHHHHHh
Confidence 998 8999999999998875332 23467877754
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.8e-13 Score=128.93 Aligned_cols=115 Identities=23% Similarity=0.382 Sum_probs=93.4
Q ss_pred cEEEEEEEEeecCC-----CCCcEEEEEECCe-EEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCC
Q 001703 4 TRLYVYVLQGQDLL-----AKDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~-----~~DPyv~v~l~~~-~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~ 77 (1024)
.+|.|+|++|+.+. .+||||++++++. .++|+++++++||.|||+|.|.+. ....|.|+|||++ . .+
T Consensus 2 ~~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~--~~~~l~~~V~d~~---~--~~ 74 (125)
T cd04021 2 SQLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT--PQSTLEFKVWSHH---T--LK 74 (125)
T ss_pred ceEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC--CCCEEEEEEEeCC---C--CC
Confidence 57999999998444 6999999999877 799999999999999999999984 4679999999999 3 57
Q ss_pred CCCeeEEEEEeCccccccCCCCCCC--EEEEeecCCCCCCCCccccEEEEEE
Q 001703 78 SGELMGRVRVPVSSIAAEDNHMLPP--TWFSLETPKTRKFTNKDCGKILLTI 127 (1024)
Q Consensus 78 ~d~~lG~~~i~L~~l~~~~~~~~~~--~W~~L~~~~~~~~~~~~~G~I~lsl 127 (1024)
.+++||++.++|.++...+...... .|++|.++..+ .....|+|.+.+
T Consensus 75 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~G~~~~~~ 124 (125)
T cd04021 75 ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKG--SSVKVGELTVIL 124 (125)
T ss_pred CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCC--cceeeeeEEEEe
Confidence 8999999999999988754433333 58999844421 146789988764
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-13 Score=128.78 Aligned_cols=98 Identities=18% Similarity=0.380 Sum_probs=83.6
Q ss_pred CCCcEEEEEECCe-EEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccC
Q 001703 18 AKDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAED 96 (1024)
Q Consensus 18 ~~DPyv~v~l~~~-~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~ 96 (1024)
.+||||+|+++++ ..+|++++++.||+|||+|.|.+.+.....|.|.|||.+ . . ++++||++.++|.++....
T Consensus 12 ~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~---~--~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 12 LLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDR---D--R-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred CCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECC---C--C-CCCeEEEEEecHHHHHhhh
Confidence 5899999999875 589999999999999999999997666788999999999 3 4 8999999999999986432
Q ss_pred CCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001703 97 NHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (1024)
Q Consensus 97 ~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (1024)
.....||+|.. ...|+|++++.|.|
T Consensus 86 --~~~~~w~~L~~--------~~~G~i~~~~~~~p 110 (111)
T cd04052 86 --SVGQQWFPLSG--------NGQGRIRISALWKP 110 (111)
T ss_pred --hccceeEECCC--------CCCCEEEEEEEEec
Confidence 23678999982 35799999999976
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-13 Score=131.79 Aligned_cols=86 Identities=29% Similarity=0.480 Sum_probs=77.1
Q ss_pred cEEEEEEEEeecCC-----CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEE-ecCCCCeEEEEEEecCCCCCCCCC
Q 001703 4 TRLYVYVLQGQDLL-----AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRV-HNIDDEELVVSVFQHNDDSGLFGS 77 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~-----~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v-~~~~~~~L~v~V~d~d~~~~f~~~ 77 (1024)
++|+|+|++|++|+ .+||||+|++++.++||+++++++||+|||+|.|.. .......|.|+|||++ . .+
T Consensus 28 ~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d---~--~s 102 (127)
T cd04032 28 ATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD---N--GW 102 (127)
T ss_pred EEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC---C--CC
Confidence 68999999999998 689999999998899999999999999999999974 3346789999999999 3 57
Q ss_pred CCCeeEEEEEeCccccc
Q 001703 78 SGELMGRVRVPVSSIAA 94 (1024)
Q Consensus 78 ~d~~lG~~~i~L~~l~~ 94 (1024)
+|++||++.++|.....
T Consensus 103 ~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 103 DDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCCeeEEEEEEecCCce
Confidence 99999999999986653
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.6e-14 Score=137.60 Aligned_cols=104 Identities=16% Similarity=0.241 Sum_probs=87.4
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----EEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEecC
Q 001703 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 607 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d 607 (1024)
.+.|.|+|++|+||++.+ .+.+||||++.+.. .+++|+++++++||+|||.|.|.+... ....|.|+|||.+
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~ 92 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSG 92 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCC
Confidence 458999999999999999 88899999999852 366899999999999999999996432 2358999999999
Q ss_pred CCCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
. ++++++||++.|.......+...+.|..+-.
T Consensus 93 ~-~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 93 G-VRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred C-CCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 8 7999999999999766666666677777654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.9e-13 Score=131.29 Aligned_cols=115 Identities=19% Similarity=0.347 Sum_probs=91.2
Q ss_pred EEEEEEEeec--CC------CCCcEEEEEE-----CCeEEeeecccCCCCCeEeeEEEEEEecC--------CCCeEEEE
Q 001703 6 LYVYVLQGQD--LL------AKDSYVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRVHNI--------DDEELVVS 64 (1024)
Q Consensus 6 L~V~V~~Ar~--L~------~~DPyv~v~l-----~~~~~rT~v~~~t~nP~WnE~f~f~v~~~--------~~~~L~v~ 64 (1024)
..++|..|++ |+ .+||||++++ ..++.||+++++|+||+|||+|.|.+... ....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4566777777 44 5899999997 23579999999999999999999998522 24679999
Q ss_pred EEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001703 65 VFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (1024)
Q Consensus 65 V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (1024)
|||.+ .| ..+|++||++.++|..+.... ....|++|.+.+ ...+|+|++.+..-..
T Consensus 84 V~d~~---~f-~~~D~~iG~~~i~L~~l~~~~---~~~~~~~L~~~~-----k~~Gg~l~v~ir~r~p 139 (155)
T cd08690 84 VYHKG---GF-LRSDKLLGTAQVKLEPLETKC---EIHESVDLMDGR-----KATGGKLEVKVRLREP 139 (155)
T ss_pred EEeCC---Cc-ccCCCeeEEEEEEcccccccC---cceEEEEhhhCC-----CCcCCEEEEEEEecCC
Confidence 99999 43 357999999999999997642 356799987332 3578999999998654
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.8e-14 Score=156.47 Aligned_cols=123 Identities=22% Similarity=0.398 Sum_probs=103.0
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCC---
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPF--- 610 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~--- 610 (1024)
|...++++|+.|.+|.++|..|++||||.+.+|+.+++|+++...+||+|||.|.|+ ..+....|++.|||.|..+
T Consensus 293 wsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfe-chnstdrikvrvwded~dlksk 371 (1283)
T KOG1011|consen 293 WSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFE-CHNSTDRIKVRVWDEDNDLKSK 371 (1283)
T ss_pred cceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeee-ecCCCceeEEEEecCcccHHHH
Confidence 667899999999999999999999999999999999999999999999999999999 5677889999999998421
Q ss_pred -------CCCccceEEEEEcccccCCCccceEEEccccccc-cccceeEEEE--EEecc
Q 001703 611 -------DQATSLGHAEINFLKHTSTELADMWVSLEGKLAQ-SAQSKVHLRI--FLENN 659 (1024)
Q Consensus 611 -------~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~g~l~l~~--~~~~~ 659 (1024)
..|||+|++.|.+..+. +..+.||.|+...++ +.+|.|.|.| ++.+.
T Consensus 372 lrqkl~resddflgqtvievrtls--gemdvwynlekrtdksavsgairlhisveikge 428 (1283)
T KOG1011|consen 372 LRQKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHISVEIKGE 428 (1283)
T ss_pred HHHHhhhcccccccceeEEEEecc--cchhhhcchhhccchhhccceEEEEEEEEEcCc
Confidence 46899999999999865 457899999874332 3455555544 55443
|
|
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-13 Score=130.04 Aligned_cols=86 Identities=22% Similarity=0.421 Sum_probs=72.0
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEEC---C--eEEeeecccCCC-CCeEeeEEEEEEe-cCCCCeEEEEEEec
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIG---K--HKSKSRILKNNS-NPVWNEEFVFRVH-NIDDEELVVSVFQH 68 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~---~--~~~rT~v~~~t~-nP~WnE~f~f~v~-~~~~~~L~v~V~d~ 68 (1024)
..++|.|.|++|+||+ .+||||+|++. + .++||+++++|+ ||+|||+|.|+++ +.....|.|+|||+
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~ 91 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSR 91 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeC
Confidence 3578999999999998 45889999993 1 368999999995 6999999999997 34456788889998
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccc
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSI 92 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~L~~l 92 (1024)
+ ..+++++||++.++....
T Consensus 92 ~-----~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 92 S-----SVRRKHFLGQVWISSDSS 110 (135)
T ss_pred C-----CCcCCceEEEEEECCccC
Confidence 8 367999999999998653
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-13 Score=136.60 Aligned_cols=99 Identities=28% Similarity=0.506 Sum_probs=83.8
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEEC-----CeEEeeecccCCCCCeEeeEEEEEEe---cCCCCeEEEEEEe
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQ 67 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~-----~~~~rT~v~~~t~nP~WnE~f~f~v~---~~~~~~L~v~V~d 67 (1024)
..+.|.|+|++|+||+ .+||||++++. ..++||++++++.||.|||+|.|.+. ......|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 3578999999999998 68999999983 35689999999999999999999842 3345689999999
Q ss_pred cCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 68 HNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 68 ~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
++ . .+++++||++.+++.++...+ ....|+.|.
T Consensus 105 ~d---~--~~~d~~lG~v~i~l~~~~~~~---~~~~w~~~~ 137 (162)
T cd04020 105 HD---K--LSSNDFLGGVRLGLGTGKSYG---QAVDWMDST 137 (162)
T ss_pred CC---C--CCCCceEEEEEEeCCccccCC---CccccccCC
Confidence 99 4 568999999999999987643 367898886
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.8e-13 Score=129.52 Aligned_cols=98 Identities=26% Similarity=0.429 Sum_probs=83.9
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEEC---CeEEeeecccCCCCCeEeeEEEEEEec--CCCCeEEEEEEecCC
Q 001703 3 STRLYVYVLQGQDLL-------AKDSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFRVHN--IDDEELVVSVFQHND 70 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~---~~~~rT~v~~~t~nP~WnE~f~f~v~~--~~~~~L~v~V~d~d~ 70 (1024)
.+.|.|+|++|+||+ .+||||++++. ...++|+++++++||+|||+|.|.++. .....|.|.|||.+
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~- 91 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVD- 91 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECC-
Confidence 578999999999998 56999999984 345899999999999999999999862 33568999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 71 ~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
. .+++++||++.++|.++.... ....|++|+
T Consensus 92 --~--~~~~~~iG~~~i~L~~l~~~~---~~~~w~~L~ 122 (123)
T cd08390 92 --R--FSRHCIIGHVLFPLKDLDLVK---GGVVWRDLE 122 (123)
T ss_pred --c--CCCCcEEEEEEEeccceecCC---CceEEEeCC
Confidence 3 568999999999999998753 356899997
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.7e-13 Score=129.76 Aligned_cols=97 Identities=26% Similarity=0.469 Sum_probs=85.0
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccC-CCCCeEeeEEEEEEecC---CCCeEEEEEEecCCCCC
Q 001703 4 TRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKN-NSNPVWNEEFVFRVHNI---DDEELVVSVFQHNDDSG 73 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~-t~nP~WnE~f~f~v~~~---~~~~L~v~V~d~d~~~~ 73 (1024)
+.|.|+|++|++|+ .+||||++++++...+|+++++ +.||.|||+|.|.+... ....|.|+|||.+ .
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~---~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKD---N 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECc---c
Confidence 57999999999998 6899999999988899999885 99999999999999644 3578999999999 3
Q ss_pred CCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 74 LFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 74 f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
.+++++||++.++|.++...+ ..+.|+.|.
T Consensus 78 --~~~d~~iG~~~i~l~~l~~~~---~~~~~~~l~ 107 (124)
T cd04049 78 --FSDDDFIGEATIHLKGLFEEG---VEPGTAELV 107 (124)
T ss_pred --CCCCCeEEEEEEEhHHhhhCC---CCcCceEee
Confidence 468999999999999998753 357899998
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.4e-13 Score=132.57 Aligned_cols=86 Identities=34% Similarity=0.586 Sum_probs=79.0
Q ss_pred cEEEEEEEEeecCC-----CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCC
Q 001703 4 TRLYVYVLQGQDLL-----AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~-----~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~ 78 (1024)
|.|+|+|++|+||+ .+||||++++++++.+|++++++.||+|||+|.|.+++ ....|.|+|||++ . .++
T Consensus 2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~-~~~~l~~~V~D~d---~--~~~ 75 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPN-PMAPLKLEVFDKD---T--FSK 75 (145)
T ss_pred eEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecC-CCCEEEEEEEECC---C--CCC
Confidence 68999999999997 78999999999999999999999999999999999964 4888999999999 4 578
Q ss_pred CCeeEEEEEeCcccccc
Q 001703 79 GELMGRVRVPVSSIAAE 95 (1024)
Q Consensus 79 d~~lG~~~i~L~~l~~~ 95 (1024)
|++||++.+++.++...
T Consensus 76 dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 76 DDSMGEAEIDLEPLVEA 92 (145)
T ss_pred CCEEEEEEEEHHHhhhh
Confidence 99999999999998764
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.2e-13 Score=127.54 Aligned_cols=107 Identities=26% Similarity=0.438 Sum_probs=89.1
Q ss_pred EEEEEEEeecCC------CCCcEEEEEECCe-EEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCC
Q 001703 6 LYVYVLQGQDLL------AKDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (1024)
Q Consensus 6 L~V~V~~Ar~L~------~~DPyv~v~l~~~-~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~ 78 (1024)
|+|+|++|++|+ .+||||+|++++. .++|+++.++.+|.|||+|.|.+.....+.|.|+|||++ . .++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~---~--~~~ 75 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWD---R--GGK 75 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCC---C--CCC
Confidence 689999999998 5899999999754 489999999999999999999996556789999999999 3 568
Q ss_pred CCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEE
Q 001703 79 GELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILL 125 (1024)
Q Consensus 79 d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~l 125 (1024)
+++||++.+++.++..+ .....|++|. +++ ....|.|.+
T Consensus 76 ~~~iG~~~~~l~~l~~~---~~~~~~~~L~-~~g----~~~~~~~~~ 114 (115)
T cd04040 76 DDLLGSAYIDLSDLEPE---ETTELTLPLD-GQG----GGKLGAVFL 114 (115)
T ss_pred CCceEEEEEEHHHcCCC---CcEEEEEECc-CCC----CccCceEEc
Confidence 99999999999998764 2367899998 433 235666653
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.7e-13 Score=131.69 Aligned_cols=97 Identities=29% Similarity=0.517 Sum_probs=79.8
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC------eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEec
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK------HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~------~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~ 68 (1024)
.++|.|+|++|+||+ .+||||++++.. .++||++++++.||+|||+|.|.++ +.....|.|.|||.
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~ 93 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNK 93 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEEC
Confidence 578999999999998 689999999952 2479999999999999999999987 46678999999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+ + .+++++||++.+++...... ....|+.+.
T Consensus 94 ~---~--~~~~~~iG~v~l~~~~~~~~----~~~hW~~~l 124 (138)
T cd08408 94 R---K--MKRKEMIGWFSLGLNSSGEE----EEEHWNEMK 124 (138)
T ss_pred C---C--CCCCcEEEEEEECCcCCCch----HHHHHHHHH
Confidence 9 4 57899999999988654321 123566554
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.2e-13 Score=154.50 Aligned_cols=125 Identities=21% Similarity=0.340 Sum_probs=107.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CEEEeeecccCCCCCeEeEEEEEEeec--CCCCeEEEEEEecCCCC
Q 001703 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAME--EPPSVLDVEVFDFDGPF 610 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~t~nP~WnE~f~f~~~~--~~~~~L~v~V~D~d~~~ 610 (1024)
..|.|+|++|++|+.+|..|.+||||++++- +.+++|++.++|+||.|||+|.|.+.. .....|.+.|||+|+ |
T Consensus 167 ~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr-f 245 (421)
T KOG1028|consen 167 NLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR-F 245 (421)
T ss_pred CEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC-c
Confidence 4799999999999999977889999999995 467899999999999999999999532 346699999999999 9
Q ss_pred CCCccceEEEEEcccccCCCccceEEEcccc--ccccccceeEEEEEEeccCC
Q 001703 611 DQATSLGHAEINFLKHTSTELADMWVSLEGK--LAQSAQSKVHLRIFLENNNG 661 (1024)
Q Consensus 611 ~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~--~~~~~~g~l~l~~~~~~~~~ 661 (1024)
+++++||++.++|..+........|.+|... ......|+|.+.+.+.+..+
T Consensus 246 sr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g 298 (421)
T KOG1028|consen 246 SRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAG 298 (421)
T ss_pred ccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCC
Confidence 9999999999999998887778899999874 22223379999998776644
|
|
| >PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.2e-14 Score=119.46 Aligned_cols=67 Identities=45% Similarity=0.843 Sum_probs=48.4
Q ss_pred ccccccccCCCccccccceeeeeec-ccccccceeeeecEEEEEeccCCCeE-EEEEecccceeeEecc
Q 001703 689 STFQKLFALPPEEFLIKDFTCYLKR-KMPLQGRLFLSARIVGFYANLFGNKT-KFFFLWEDIEDIQILS 755 (1024)
Q Consensus 689 ~~f~~~f~l~~~e~l~~~~~c~~~~-~~~~~G~lyis~~~~cF~s~~~g~~~-~~~i~~~di~~i~k~~ 755 (1024)
+.|++.|+||.+|.|+.+|.|++.+ .++.+|+||||.+|+||+|+.++..+ +++|||.||.+|+|.+
T Consensus 1 ~~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~~ 69 (69)
T PF02893_consen 1 EKFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKET 69 (69)
T ss_dssp ----------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE-
T ss_pred CcccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEeC
Confidence 3689999999999999999999998 89999999999999999999999888 9999999999999863
|
It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A. |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.4e-13 Score=125.19 Aligned_cols=88 Identities=18% Similarity=0.327 Sum_probs=75.6
Q ss_pred EEEEEeeCCCCCCCCCCCCcEEEEEECC------EEEeeecccCCCCCeEeEEEEEEee----cCCCCeEEEEEEecCCC
Q 001703 540 VALVEGVNLASSEMTGLSDPYVVFTCNG------KTRTSSVQLQTCDPQWHDILEFDAM----EEPPSVLDVEVFDFDGP 609 (1024)
Q Consensus 540 V~vi~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~~~~~t~nP~WnE~f~f~~~----~~~~~~L~v~V~D~d~~ 609 (1024)
+-.++|++|+..|..|.+||||+|++.+ ..++|+++++++||+|| +|.|.+. .+....|.|+|||+|.
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~- 81 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS- 81 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC-
Confidence 4567999999999999999999999854 25899999999999999 7888742 1236799999999998
Q ss_pred CCCCccceEEEEEcccccCC
Q 001703 610 FDQATSLGHAEINFLKHTST 629 (1024)
Q Consensus 610 ~~~dd~lG~~~i~l~~l~~~ 629 (1024)
+++|++||++.+++.++...
T Consensus 82 ~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 82 SGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCCcEEEEEEEEHHHHhcC
Confidence 89999999999999998744
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.7e-13 Score=129.65 Aligned_cols=96 Identities=22% Similarity=0.450 Sum_probs=80.4
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEecC
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~d 69 (1024)
.+.|.|+|++|+||+ .+||||+|++.+ .+.+|+++++++||+|||+|.|.+. ......|.|+|||.|
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d 91 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKD 91 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCC
Confidence 578999999999998 689999999953 3589999999999999999999986 334678999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 70 ~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
. .+++++||++.+++.... .....|+++.
T Consensus 92 ---~--~~~~~~lG~~~i~l~~~~-----~~~~~W~~~l 120 (133)
T cd08384 92 ---I--GKSNDYIGGLQLGINAKG-----ERLRHWLDCL 120 (133)
T ss_pred ---C--CCCccEEEEEEEecCCCC-----chHHHHHHHH
Confidence 3 568999999999997522 2256788876
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.7e-13 Score=129.70 Aligned_cols=97 Identities=28% Similarity=0.473 Sum_probs=78.6
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEec
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~ 68 (1024)
..++|.|+|++|++|+ .+||||+|+++. .+++|+++++++||.|||+|.|.++ ......|.|+|||+
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~ 92 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDY 92 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeC
Confidence 3578999999999998 689999999942 3578999999999999999999986 23346899999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+ + .+++++||++.+++..... ....|+++.
T Consensus 93 ~---~--~~~~~~iG~~~i~~~~~~~-----~~~~W~~~~ 122 (136)
T cd08402 93 D---R--IGKNDPIGKVVLGCNATGA-----ELRHWSDML 122 (136)
T ss_pred C---C--CCCCceeEEEEECCccCCh-----HHHHHHHHH
Confidence 9 4 5789999999999976422 234565554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-12 Score=124.15 Aligned_cols=96 Identities=21% Similarity=0.329 Sum_probs=84.0
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECC-eEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCC
Q 001703 4 TRLYVYVLQGQDLL------AKDSYVKVQIGK-HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~-~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~ 76 (1024)
+.|+|+|++|++|+ .+||||++++++ ..++|++++++.||.|||+|.|.+. ...+.|.|+|||++ . .
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~~L~v~v~d~~---~--~ 74 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVT-SPNQKITLEVMDYE---K--V 74 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEec-CCCCEEEEEEEECC---C--C
Confidence 57999999999999 789999999976 4599999999999999999999984 44579999999999 3 5
Q ss_pred CCCCeeEEEEEeCccccccCCCCCCCEEEEeec
Q 001703 77 SSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109 (1024)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~ 109 (1024)
+++++||++.++|.++... ....||.|.+
T Consensus 75 ~~d~~IG~~~~~l~~l~~~----~~~~~~~~~~ 103 (120)
T cd04045 75 GKDRSLGSVEINVSDLIKK----NEDGKYVEYD 103 (120)
T ss_pred CCCCeeeEEEEeHHHhhCC----CCCceEEecC
Confidence 7889999999999999864 3577999983
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.3e-13 Score=129.24 Aligned_cols=90 Identities=24% Similarity=0.424 Sum_probs=77.8
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC-------CeEEeeecccCCCCCeEeeEEEEEEec----CCCCeEEEEE
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIG-------KHKSKSRILKNNSNPVWNEEFVFRVHN----IDDEELVVSV 65 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~-------~~~~rT~v~~~t~nP~WnE~f~f~v~~----~~~~~L~v~V 65 (1024)
.+.|.|+|++|++|+ .+||||+|++. ..+++|+++++++||+|||+|.|.+.. .....|.|+|
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V 94 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTV 94 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence 468999999999998 68999999995 246899999999999999999999863 2467899999
Q ss_pred EecCCCCCCCCCCCCeeEEEEEeCccccccCC
Q 001703 66 FQHNDDSGLFGSSGELMGRVRVPVSSIAAEDN 97 (1024)
Q Consensus 66 ~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~ 97 (1024)
||++ + .+++++||++.++|.++...++
T Consensus 95 ~d~d---~--~~~d~~iG~~~i~l~~l~~~~~ 121 (133)
T cd04009 95 KDYD---L--LGSNDFEGEAFLPLNDIPGVED 121 (133)
T ss_pred EecC---C--CCCCcEeEEEEEeHHHCCcccc
Confidence 9999 4 5689999999999999886433
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-12 Score=120.74 Aligned_cols=83 Identities=20% Similarity=0.457 Sum_probs=69.2
Q ss_pred EEEEEEEeecCC-CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCC---CCCC
Q 001703 6 LYVYVLQGQDLL-AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDS---GLFG 76 (1024)
Q Consensus 6 L~V~V~~Ar~L~-~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~---~f~~ 76 (1024)
|.|+|++|+||. .+||||++.++. .+.+|+++++|+||+|||+|.|.++ ....|++.|||+..+. . ..
T Consensus 1 L~V~V~~A~~L~~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~~d-~~ 77 (118)
T cd08686 1 LNVIVHSAQGFKQSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVKLD-GE 77 (118)
T ss_pred CEEEEEeCCCCCCCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEccccccccc-cc
Confidence 689999999999 899999999953 3599999999999999999999994 5889999999983000 0 24
Q ss_pred CCCCeeEEEEEeCcc
Q 001703 77 SSGELMGRVRVPVSS 91 (1024)
Q Consensus 77 ~~d~~lG~~~i~L~~ 91 (1024)
++|++||++.+.|..
T Consensus 78 ~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 78 GTDAIMGKGQIQLDP 92 (118)
T ss_pred CcccEEEEEEEEECH
Confidence 689999999987754
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.2e-13 Score=127.52 Aligned_cols=84 Identities=25% Similarity=0.437 Sum_probs=75.2
Q ss_pred EEEEEEEeecCC------CCCcEEEEEECCeE--EeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCC
Q 001703 6 LYVYVLQGQDLL------AKDSYVKVQIGKHK--SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (1024)
Q Consensus 6 L~V~V~~Ar~L~------~~DPyv~v~l~~~~--~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~ 77 (1024)
|+|+|++|++|+ .+||||++++++.. .+|+++++++||+|||+|.|.+..+....|.|+|||++ . .+
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d---~--~~ 76 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYD---L--LG 76 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECC---C--CC
Confidence 799999999998 79999999998765 68888999999999999999986566789999999999 3 57
Q ss_pred CCCeeEEEEEeCccccc
Q 001703 78 SGELMGRVRVPVSSIAA 94 (1024)
Q Consensus 78 ~d~~lG~~~i~L~~l~~ 94 (1024)
++++||++.++|.+...
T Consensus 77 ~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 77 SDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCceeEEEEEeeccccc
Confidence 89999999999988775
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-12 Score=128.07 Aligned_cols=96 Identities=29% Similarity=0.456 Sum_probs=80.2
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEecC
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~d 69 (1024)
.+.|.|+|++|+||+ .+||||++++.. .+.+|+++++++||.|||+|.|.++ ......|.|+|||+|
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d 93 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECC
Confidence 578999999999998 689999999942 2478999999999999999999986 235578999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 70 ~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+ .+++++||++.+++.. .. .....|+.|.
T Consensus 94 ---~--~~~~~~iG~~~~~~~~-~~----~~~~~w~~l~ 122 (136)
T cd08404 94 ---R--VTKNEVIGRLVLGPKA-SG----SGGHHWKEVC 122 (136)
T ss_pred ---C--CCCCccEEEEEECCcC-CC----chHHHHHHHH
Confidence 4 5789999999999987 22 1256788876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=127.85 Aligned_cols=98 Identities=28% Similarity=0.545 Sum_probs=77.4
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEec
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~ 68 (1024)
..+.|.|+|++|++|+ .+||||++++.. .+++|+++++++||+|||+|.|.++ ......|.|+|||+
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~ 91 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGH 91 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeC
Confidence 4578999999999998 689999999832 3479999999999999999999986 33455799999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
| ..+++++||++.|........ ....|+.|.
T Consensus 92 d-----~~~~~~~iG~~~l~~~~~~~~----~~~~W~~l~ 122 (135)
T cd08410 92 N-----VKSSNDFIGRIVIGQYSSGPS----ETNHWRRML 122 (135)
T ss_pred C-----CCCCCcEEEEEEEcCccCCch----HHHHHHHHH
Confidence 9 357899999998754333221 235577665
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-12 Score=127.84 Aligned_cols=86 Identities=29% Similarity=0.531 Sum_probs=74.2
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEEC--C---eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEec
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIG--K---HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~--~---~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~ 68 (1024)
..++|.|+|++|+||+ .+||||+|++. + .+.+|++++++.||.|||+|.|.++ ......|.|+|||.
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~ 92 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDK 92 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEEC
Confidence 3578999999999998 68999999983 2 3579999999999999999999986 23457899999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccc
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSI 92 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~L~~l 92 (1024)
+ + .+++++||++.+++.+.
T Consensus 93 ~---~--~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 93 D---R--LSRNDLIGKIYLGWKSG 111 (136)
T ss_pred C---C--CCCCcEeEEEEECCccC
Confidence 9 3 57899999999999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-12 Score=127.79 Aligned_cols=100 Identities=28% Similarity=0.537 Sum_probs=85.4
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEec-CCCCeEEEEEEecCC
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHN-IDDEELVVSVFQHND 70 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~~-~~~~~L~v~V~d~d~ 70 (1024)
.+.|+|+|++|++|+ .+||||+|++.+ ..++|++++++.||.|||+|.|.+.. .....|.|+|||++
T Consensus 12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~- 90 (131)
T cd04026 12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWD- 90 (131)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECC-
Confidence 478999999999998 689999999963 56999999999999999999999752 24578999999998
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCC
Q 001703 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPK 111 (1024)
Q Consensus 71 ~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~ 111 (1024)
. .+++++||++.++|.++... ....||+|.+..
T Consensus 91 --~--~~~~~~iG~~~~~l~~l~~~----~~~~w~~L~~~~ 123 (131)
T cd04026 91 --R--TTRNDFMGSLSFGVSELIKM----PVDGWYKLLNQE 123 (131)
T ss_pred --C--CCCcceeEEEEEeHHHhCcC----ccCceEECcCcc
Confidence 3 56899999999999999753 467899998443
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-12 Score=129.72 Aligned_cols=93 Identities=27% Similarity=0.557 Sum_probs=79.6
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEECCe-----------------------------EEeeecccCCCCCeEe
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIGKH-----------------------------KSKSRILKNNSNPVWN 46 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~-----------------------------~~rT~v~~~t~nP~Wn 46 (1024)
..+.|.|+|++|+||. .+||||+|+++.. .++|+++++++||.||
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~Wn 105 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWN 105 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccc
Confidence 4578999999999997 7999999999531 3789999999999999
Q ss_pred eEEEEEEecCCCCeEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEe
Q 001703 47 EEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107 (1024)
Q Consensus 47 E~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L 107 (1024)
|+|.|.+.......|.|+|||++ +++||++.+++.++... ....||+|
T Consensus 106 E~F~f~v~~~~~~~L~i~V~D~d---------d~~IG~v~i~l~~l~~~----~~d~W~~L 153 (153)
T cd08676 106 ETFRFEVEDVSNDQLHLDIWDHD---------DDFLGCVNIPLKDLPSC----GLDSWFKL 153 (153)
T ss_pred cEEEEEeccCCCCEEEEEEEecC---------CCeEEEEEEEHHHhCCC----CCCCeEeC
Confidence 99999996556789999999875 47999999999999832 25889987
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-12 Score=126.85 Aligned_cols=86 Identities=33% Similarity=0.496 Sum_probs=73.9
Q ss_pred CcEEEEEEEEeecCC-----CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEecCC
Q 001703 3 STRLYVYVLQGQDLL-----AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHND 70 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~-----~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~d~ 70 (1024)
.++|.|+|++|+||+ .+||||++++.. .+++|++++++.||+|||+|.|.++ +.....|.|+|||.+
T Consensus 14 ~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~- 92 (137)
T cd08409 14 LNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSG- 92 (137)
T ss_pred CCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCC-
Confidence 578999999999998 589999999853 3579999999999999999999986 455578999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCcccc
Q 001703 71 DSGLFGSSGELMGRVRVPVSSIA 93 (1024)
Q Consensus 71 ~~~f~~~~d~~lG~~~i~L~~l~ 93 (1024)
. .+++++||++.++.....
T Consensus 93 --~--~~~~~~lG~v~ig~~~~~ 111 (137)
T cd08409 93 --G--VRKSKLLGRVVLGPFMYA 111 (137)
T ss_pred --C--CCCcceEEEEEECCcccC
Confidence 3 578999999999865443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-12 Score=153.58 Aligned_cols=103 Identities=23% Similarity=0.435 Sum_probs=86.3
Q ss_pred CCcEEEEEECCe-EEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCC
Q 001703 19 KDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDN 97 (1024)
Q Consensus 19 ~DPyv~v~l~~~-~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~ 97 (1024)
+||||+|.+++. ..||+++++++||+|||+|.|.+.. ....|.|+|||.| . . ++++||++.|||.++..++
T Consensus 77 SDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah-~~s~L~f~VkD~D---~--~-gaD~IG~a~IPL~~L~~Ge- 148 (868)
T PLN03008 77 SDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAH-PFAYLEFQVKDDD---V--F-GAQIIGTAKIPVRDIASGE- 148 (868)
T ss_pred CCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecC-CCceEEEEEEcCC---c--c-CCceeEEEEEEHHHcCCCC-
Confidence 499999999876 4799999999999999999999964 4569999999999 4 3 4689999999999998853
Q ss_pred CCCCCEEEEeecCCCCCCCCccccEEEEEEEEEecC
Q 001703 98 HMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKG 133 (1024)
Q Consensus 98 ~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~ 133 (1024)
....|++|.+..+ ++ .+.+|+|+|+++|.+-.
T Consensus 149 --~vd~Wl~Ll~~~~-kp-~k~~~kl~v~lqf~pv~ 180 (868)
T PLN03008 149 --RISGWFPVLGASG-KP-PKAETAIFIDMKFTPFD 180 (868)
T ss_pred --ceEEEEEccccCC-CC-CCCCcEEEEEEEEEEcc
Confidence 3789999985443 32 45679999999999853
|
|
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.4e-12 Score=122.35 Aligned_cols=111 Identities=29% Similarity=0.508 Sum_probs=89.9
Q ss_pred cEEEEEEEEeecCC--------CCCcEEEEEEC------CeEEeeecccCCC-CCeEeeEEEEEEecCCCCeEEEEEEec
Q 001703 4 TRLYVYVLQGQDLL--------AKDSYVKVQIG------KHKSKSRILKNNS-NPVWNEEFVFRVHNIDDEELVVSVFQH 68 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~--------~~DPyv~v~l~------~~~~rT~v~~~t~-nP~WnE~f~f~v~~~~~~~L~v~V~d~ 68 (1024)
++|+|+|++|+||+ .+||||++++. ..+.+|+++.++. ||.|||+|.|.+.......|.|+|||.
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 68999999999997 46999999993 4558999988765 999999999998645556899999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
+ . . ++++||++.++|.++.. ...|++|..+.. . ....|.|.+.+.+
T Consensus 82 ~---~--~-~~~~iG~~~~~l~~l~~------g~~~~~l~~~~~-~--~~~~~~l~v~~~~ 127 (128)
T cd00275 82 D---S--G-DDDFLGQACLPLDSLRQ------GYRHVPLLDSKG-E--PLELSTLFVHIDI 127 (128)
T ss_pred C---C--C-CCcEeEEEEEEhHHhcC------ceEEEEecCCCC-C--CCcceeEEEEEEE
Confidence 9 3 3 89999999999999854 346899974432 2 3457898888765
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.6e-12 Score=125.63 Aligned_cols=97 Identities=30% Similarity=0.471 Sum_probs=78.1
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEec
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~ 68 (1024)
..+.|+|+|++|++|+ .+||||+|++.. .+++|+++++++||.|||+|.|.++ ......|.|+|||+
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~ 91 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDY 91 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence 4688999999999998 689999999842 2579999999999999999999986 23345799999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+ + .+++++||++.+++..... ....|+.+.
T Consensus 92 ~---~--~~~~~~IG~~~l~~~~~~~-----~~~~w~~~~ 121 (134)
T cd08403 92 D---R--VGHNELIGVCRVGPNADGQ-----GREHWNEML 121 (134)
T ss_pred C---C--CCCCceeEEEEECCCCCCc-----hHHHHHHHH
Confidence 9 3 6789999999998763221 134566664
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-12 Score=114.69 Aligned_cols=82 Identities=32% Similarity=0.553 Sum_probs=75.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC---EEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCc
Q 001703 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNG---KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd 614 (1024)
|+|+|++|+||+..+..+..||||++.+++ ..++|+++.++.+|.|||+|.|.+.......|.|+|||++. +++|+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~-~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDS-FGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETS-SSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCC-CCCCC
Confidence 789999999999988889999999999987 78999999999999999999999766666779999999998 78899
Q ss_pred cceEEE
Q 001703 615 SLGHAE 620 (1024)
Q Consensus 615 ~lG~~~ 620 (1024)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999984
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-12 Score=148.37 Aligned_cols=162 Identities=20% Similarity=0.272 Sum_probs=128.9
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECCeE-EeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCC
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLF 75 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~-~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~ 75 (1024)
...|+|+|.+|+||+ .+||||.|.+..+. .||.++.+++.|-|.|+|.|++ +.....|.|.|||.|
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~i-P~~F~~l~fYv~D~d------ 76 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEI-PRTFRYLSFYVWDRD------ 76 (800)
T ss_pred ccceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEec-CcceeeEEEEEeccc------
Confidence 467999999999999 78999999998765 9999999999999999999999 488899999999999
Q ss_pred CCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEecC--CeeeEEEEEeeccCCCCCCC
Q 001703 76 GSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKG--HNLSSNRLLYLHSNVSSNES 153 (1024)
Q Consensus 76 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~--~~l~v~v~~~~~~~L~~~~~ 153 (1024)
+++|+.||.+.|.=.++...++ .+.|+.|. +-+.. ....|+|+|.+.+.+.. ..+...+++. +.+-+..
T Consensus 77 ~~~D~~IGKvai~re~l~~~~~---~d~W~~L~-~VD~d--sEVQG~v~l~l~~~e~~~~~~~~c~~L~~--r~~~P~~- 147 (800)
T KOG2059|consen 77 LKRDDIIGKVAIKREDLHMYPG---KDTWFSLQ-PVDPD--SEVQGKVHLELALTEAIQSSGLVCHVLKT--RQGLPII- 147 (800)
T ss_pred cccccccceeeeeHHHHhhCCC---Cccceecc-ccCCC--hhhceeEEEEEEeccccCCCcchhhhhhh--cccCcee-
Confidence 6899999999998888876543 77899998 54433 67899999999998753 3444455554 3443333
Q ss_pred CCCCCCeEEEEecCCCCCCccccccccc
Q 001703 154 KELEDPCVLSHDVSCSKAPCLDVTEGNH 181 (1024)
Q Consensus 154 ~g~sdp~vkv~l~~~~~~~~~~~~~~~~ 181 (1024)
++.+|||+++.+....+-.. ++|+.++
T Consensus 148 ~~~~dp~~~v~~~g~~~~~~-~~T~~~k 174 (800)
T KOG2059|consen 148 NGQCDPFARVTLCGPSKLKE-KKTKVKK 174 (800)
T ss_pred CCCCCcceEEeecccchhhc-cccceee
Confidence 35599999998877766444 4454443
|
|
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-13 Score=146.47 Aligned_cols=97 Identities=28% Similarity=0.560 Sum_probs=86.3
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC-----CeEEeeecccCCCCCeEeeEEEEEEe-cCCCCeEEEEEEecCC
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRVH-NIDDEELVVSVFQHND 70 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~-----~~~~rT~v~~~t~nP~WnE~f~f~v~-~~~~~~L~v~V~d~d~ 70 (1024)
...|.|+|.+|+||. .+||||++++- ..+++|++++.++||+|||+|+|++. ....+.|.|+|||+|
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD- 257 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD- 257 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc-
Confidence 457999999999998 79999999993 34699999999999999999999975 667789999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 71 ~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+ .+++||+|...+.+++|... +...||.|.
T Consensus 258 --r--TsRNDFMGslSFgisEl~K~----p~~GWyKlL 287 (683)
T KOG0696|consen 258 --R--TSRNDFMGSLSFGISELQKA----PVDGWYKLL 287 (683)
T ss_pred --c--cccccccceecccHHHHhhc----chhhHHHHh
Confidence 5 68999999999999999874 467899998
|
|
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.34 E-value=3e-12 Score=122.66 Aligned_cols=95 Identities=19% Similarity=0.297 Sum_probs=77.4
Q ss_pred EEEeecCC------CCCcEEEEEECCe-------EEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCC
Q 001703 10 VLQGQDLL------AKDSYVKVQIGKH-------KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (1024)
Q Consensus 10 V~~Ar~L~------~~DPyv~v~l~~~-------~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~ 76 (1024)
.++|++|+ .+||||+|++.+. .++|+++++++||+|||+|.|.+.......|.|+|||+|.... ..
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~-~~ 84 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSK-DL 84 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcC-CC
Confidence 47899998 6899999999654 3899999999999999999998754566789999999992000 04
Q ss_pred CCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 77 SSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+++++||++.+++.++...++ ...|++|.
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~---~~~~~~l~ 113 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPG---QKLTLPLK 113 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCC---cEEEEEcc
Confidence 689999999999999987533 55688884
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.8e-12 Score=121.57 Aligned_cols=97 Identities=31% Similarity=0.469 Sum_probs=82.2
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEECCe-----EEeeecccCCCCCeEeeEEEEEEecC--CCCeEEEEEEec
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIGKH-----KSKSRILKNNSNPVWNEEFVFRVHNI--DDEELVVSVFQH 68 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~-----~~rT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V~d~ 68 (1024)
..++|.|+|++|+||+ .+||||++++.+. +++|++++++.||.|||+|.|.+... ....|.|+|||.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~ 91 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK 91 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence 4689999999999998 6899999999642 57999999999999999999998632 368899999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+ + .+++++||++.+++.+ .+ .....|++|.
T Consensus 92 ~---~--~~~~~~lG~~~i~l~~--~~---~~~~~W~~l~ 121 (134)
T cd00276 92 D---S--VGRNEVIGQVVLGPDS--GG---EELEHWNEML 121 (134)
T ss_pred C---C--CCCCceeEEEEECCCC--CC---cHHHHHHHHH
Confidence 9 3 4689999999999998 22 2367799887
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.6e-12 Score=106.11 Aligned_cols=58 Identities=43% Similarity=0.687 Sum_probs=55.9
Q ss_pred CCCccccccceeeeeecccccccceeeeecEEEEEeccCCCeE-EEEEecccceeeEec
Q 001703 697 LPPEEFLIKDFTCYLKRKMPLQGRLFLSARIVGFYANLFGNKT-KFFFLWEDIEDIQIL 754 (1024)
Q Consensus 697 l~~~e~l~~~~~c~~~~~~~~~G~lyis~~~~cF~s~~~g~~~-~~~i~~~di~~i~k~ 754 (1024)
||++|.|+++|.|++.+.++.+|+||+|++++||+|+.+|+.+ +++||+.||.+|+|.
T Consensus 2 l~~~E~l~~~~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~ 60 (61)
T smart00568 2 LPEEEKLIADYSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKS 60 (61)
T ss_pred cCCCcEEEEEEEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEEC
Confidence 7899999999999999999999999999999999999999988 999999999999986
|
|
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.2e-12 Score=141.13 Aligned_cols=121 Identities=34% Similarity=0.617 Sum_probs=101.5
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCC----
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDS---- 72 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~---- 72 (1024)
+..+.++|++|.+|. ++||||.+++++.+.||+++...+||+|||.|.|+++ .....+.|.|||.|.+.
T Consensus 294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfech-nstdrikvrvwded~dlkskl 372 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECH-NSTDRIKVRVWDEDNDLKSKL 372 (1283)
T ss_pred ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeec-CCCceeEEEEecCcccHHHHH
Confidence 467899999999998 7999999999999999999999999999999999994 78889999999999443
Q ss_pred --CCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001703 73 --GLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (1024)
Q Consensus 73 --~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (1024)
++...+|||||+..|.+..+... .+.||+|+ .+..+ +...|-|+|.+..+-.
T Consensus 373 rqkl~resddflgqtvievrtlsge-----mdvwynle-krtdk--savsgairlhisveik 426 (1283)
T KOG1011|consen 373 RQKLTRESDDFLGQTVIEVRTLSGE-----MDVWYNLE-KRTDK--SAVSGAIRLHISVEIK 426 (1283)
T ss_pred HHHhhhcccccccceeEEEEecccc-----hhhhcchh-hccch--hhccceEEEEEEEEEc
Confidence 11224789999999998888754 67899999 55444 5778988888877643
|
|
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.26 E-value=3e-11 Score=116.23 Aligned_cols=88 Identities=19% Similarity=0.455 Sum_probs=75.3
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEEC-----CeEEeeecccCCCCCeEeeEEEEE-Ee--cCCCCeEEEEEEe
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFR-VH--NIDDEELVVSVFQ 67 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~-----~~~~rT~v~~~t~nP~WnE~f~f~-v~--~~~~~~L~v~V~d 67 (1024)
..+.|.|+|++|++|+ .+||||++++. ...++|++++++.||.|||+|.|. +. +.....|.|+|||
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d 92 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLD 92 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence 3578999999999998 68999999984 236899999999999999999996 42 2345789999999
Q ss_pred cCCCCCCCCCCCCeeEEEEEeCcccccc
Q 001703 68 HNDDSGLFGSSGELMGRVRVPVSSIAAE 95 (1024)
Q Consensus 68 ~d~~~~f~~~~d~~lG~~~i~L~~l~~~ 95 (1024)
.+ + . ++++||++.++|.++...
T Consensus 93 ~~---~--~-~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 93 ED---R--F-GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred cC---C--c-CCeeEEEEEEEcccCCCC
Confidence 99 3 4 789999999999999875
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-11 Score=140.42 Aligned_cols=119 Identities=23% Similarity=0.283 Sum_probs=106.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-EEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCcc
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~ 615 (1024)
-|.|+|.+|+||++.+..|.+||||.|.++. ...+|.++.++|.|-|.|+|.|+ .+..-..|.|-|||.|. ++|+.
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~-iP~~F~~l~fYv~D~d~--~~D~~ 82 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFE-IPRTFRYLSFYVWDRDL--KRDDI 82 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEe-cCcceeeEEEEEecccc--ccccc
Confidence 5899999999999999999999999999986 56799999999999999999999 45556689999999994 99999
Q ss_pred ceEEEEEcccccCCCccceEEEccc-cccccccceeEEEEEEec
Q 001703 616 LGHAEINFLKHTSTELADMWVSLEG-KLAQSAQSKVHLRIFLEN 658 (1024)
Q Consensus 616 lG~~~i~l~~l~~~~~~~~w~~L~~-~~~~~~~g~l~l~~~~~~ 658 (1024)
||.+.|.=.++......+.|+.|.. ..+...+|++||++.+..
T Consensus 83 IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e 126 (800)
T KOG2059|consen 83 IGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTE 126 (800)
T ss_pred cceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEecc
Confidence 9999999999888788899999987 455567999999998654
|
|
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.24 E-value=5e-11 Score=108.98 Aligned_cols=100 Identities=32% Similarity=0.604 Sum_probs=89.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-EEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCccc
Q 001703 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 616 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~l 616 (1024)
|.|++++|++|......+..||||.+.+.+ ...+|+++.++.||.|||.|.|.+.......|.|+|||++. .+.+.+|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~-~~~~~~i 79 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDR-FSKDDFL 79 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCC-CCCCcee
Confidence 478999999999877778999999999998 88999999999999999999999655457799999999998 6778999
Q ss_pred eEEEEEccccc-CCCccceEEEc
Q 001703 617 GHAEINFLKHT-STELADMWVSL 638 (1024)
Q Consensus 617 G~~~i~l~~l~-~~~~~~~w~~L 638 (1024)
|++.+++..+. .......|++|
T Consensus 80 g~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 80 GEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEEeHHHhhhcCCcCcceecC
Confidence 99999999988 77778888876
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.5e-11 Score=157.68 Aligned_cols=114 Identities=18% Similarity=0.428 Sum_probs=95.6
Q ss_pred CcEEEEEEEEeecCC----CCCcEEEEEECCe-EEeeecccCCCCCeEeeEEEEEEecC-CCCeEEEEEEecCCCCCCCC
Q 001703 3 STRLYVYVLQGQDLL----AKDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNI-DDEELVVSVFQHNDDSGLFG 76 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~----~~DPyv~v~l~~~-~~rT~v~~~t~nP~WnE~f~f~v~~~-~~~~L~v~V~d~d~~~~f~~ 76 (1024)
-|.|+|+|++|+||. .+||||++.++++ +.||++++++.||+|||+|.|.+.++ .+..|.++|||+| .|
T Consensus 1979 ~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d---~f-- 2053 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN---TF-- 2053 (2102)
T ss_pred CcceEEEEeeccccccccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC---cc--
Confidence 478999999999999 7899999999965 78999999999999999999887643 4577999999999 53
Q ss_pred CCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccE---EEEEEEEEe
Q 001703 77 SSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGK---ILLTISLNG 131 (1024)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~---I~lsl~~~~ 131 (1024)
.++.||++.|+|.++..++ ....||+|. ++ ++..|+ |++.+.|.+
T Consensus 2054 -~kd~~G~~~i~l~~vv~~~---~~~~~~~L~-~~-----~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2054 -GKSSLGKVTIQIDRVVMEG---TYSGEYSLN-PE-----SNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred -CCCCCceEEEEHHHHhcCc---eeeeeeecC-cc-----cccCCCcceEEEEEEecC
Confidence 4559999999999999753 367899998 32 234677 999998854
|
|
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-10 Score=132.27 Aligned_cols=117 Identities=16% Similarity=0.211 Sum_probs=95.0
Q ss_pred eEEEEEEEEeeCCCCC-----CCCCCCCcEEEEEECC-----EEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEe
Q 001703 536 WVLTVALVEGVNLASS-----EMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFD 605 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~-----d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D 605 (1024)
..|+|+|+.|.+++.. +.....||||+|.+.| .+++|++..++.||+|||+|+|.+..+.-..|.|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 4799999999987521 2245689999999964 35678888899999999999999877777789999999
Q ss_pred cCCCCCCCccceEEEEEcccccCCCccceEEEcccccccc-ccceeEEEEEE
Q 001703 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIFL 656 (1024)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~~ 656 (1024)
+|. .+.|+|+|++.||+..+..|.. +++|..+.+.. ...+|.+++.+
T Consensus 489 ~D~-~~~ddfiGQ~~LPv~~Lr~GyR---~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 489 YEV-STADAFCGQTCLPVSELIEGIR---AVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred cCC-CCCCcEEEEEecchHHhcCCce---eEeccCCCcCCCCCceEEEEEEe
Confidence 998 6889999999999999998875 56887755443 45677777764
|
|
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-10 Score=109.87 Aligned_cols=82 Identities=17% Similarity=0.430 Sum_probs=68.4
Q ss_pred EEEEEeecCC------CCCcEEEEEECCe------EEeeecccCCCCCeEeeEEEEEEec----CCCCeEEEEEEecCCC
Q 001703 8 VYVLQGQDLL------AKDSYVKVQIGKH------KSKSRILKNNSNPVWNEEFVFRVHN----IDDEELVVSVFQHNDD 71 (1024)
Q Consensus 8 V~V~~Ar~L~------~~DPyv~v~l~~~------~~rT~v~~~t~nP~WnE~f~f~v~~----~~~~~L~v~V~d~d~~ 71 (1024)
+-.++|++|+ .+||||++++.++ .++|+++++++||+|| +|.|.+.. .....|.|+|||++
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d-- 80 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD-- 80 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC--
Confidence 4467899998 6899999998543 4899999999999999 78777532 22689999999999
Q ss_pred CCCCCCCCCeeEEEEEeCcccccc
Q 001703 72 SGLFGSSGELMGRVRVPVSSIAAE 95 (1024)
Q Consensus 72 ~~f~~~~d~~lG~~~i~L~~l~~~ 95 (1024)
. .++|++||++.+++.++...
T Consensus 81 -~--~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 81 -S--SGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred -C--CCCCcEEEEEEEEHHHHhcC
Confidence 3 57899999999999999853
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-10 Score=102.73 Aligned_cols=76 Identities=37% Similarity=0.630 Sum_probs=67.7
Q ss_pred EEEEEEEeecCC------CCCcEEEEEECC---eEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCC
Q 001703 6 LYVYVLQGQDLL------AKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (1024)
Q Consensus 6 L~V~V~~Ar~L~------~~DPyv~v~l~~---~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~ 76 (1024)
|+|+|++|+||+ .+||||++.+++ ...+|++++++.+|.|||+|.|.+.......|.|+|||.+ . .
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~---~--~ 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKD---S--F 75 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEET---S--S
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECC---C--C
Confidence 789999999999 679999999976 6699999999999999999999987666666999999999 3 4
Q ss_pred CCCCeeEEEE
Q 001703 77 SSGELMGRVR 86 (1024)
Q Consensus 77 ~~d~~lG~~~ 86 (1024)
+++++||++.
T Consensus 76 ~~~~~iG~~~ 85 (85)
T PF00168_consen 76 GKDELIGEVK 85 (85)
T ss_dssp SSEEEEEEEE
T ss_pred CCCCEEEEEC
Confidence 5799999974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.4e-10 Score=104.76 Aligned_cols=94 Identities=28% Similarity=0.491 Sum_probs=82.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCE---EEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCc
Q 001703 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGK---TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~---~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd 614 (1024)
|.|+|++|++|......+..+|||++++.+. ..+|+++.++.||.|||+|.|.+.......|.|+|||.+. .+.+.
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~-~~~~~ 80 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDR-FGRDD 80 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCC-ccCCc
Confidence 6899999999998876678999999999864 7999999999999999999999644447899999999997 57789
Q ss_pred cceEEEEEcccccCCCcc
Q 001703 615 SLGHAEINFLKHTSTELA 632 (1024)
Q Consensus 615 ~lG~~~i~l~~l~~~~~~ 632 (1024)
++|.+.+++.++..+...
T Consensus 81 ~~G~~~~~l~~~~~~~~~ 98 (101)
T smart00239 81 FIGQVTIPLSDLLLGGRH 98 (101)
T ss_pred eeEEEEEEHHHcccCccc
Confidence 999999999998776544
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.4e-10 Score=109.60 Aligned_cols=93 Identities=23% Similarity=0.269 Sum_probs=78.5
Q ss_pred EEEEEEEeeCCCCCCC--CCC--CCcEEEEEECC---EEEeeecccCCCC--CeEeEEEEEEeecC--------------
Q 001703 538 LTVALVEGVNLASSEM--TGL--SDPYVVFTCNG---KTRTSSVQLQTCD--PQWHDILEFDAMEE-------------- 594 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~--~g~--~DPyv~v~~~~---~~~kT~~~~~t~n--P~WnE~f~f~~~~~-------------- 594 (1024)
|+|.|.+|+|++..+. .|. +||||++.+.+ .+.+|.+..+++| |.||+.|.|++...
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 7999999999665443 664 99999999964 5689999999999 99999999986431
Q ss_pred ---------CCCeEEEEEEecCCCCCCCccceEEEEEcccccCCCc
Q 001703 595 ---------PPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTEL 631 (1024)
Q Consensus 595 ---------~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~ 631 (1024)
....|.++|||.|. +++||+||++.++|..+..+..
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~-~s~dd~iG~~~l~l~~l~~~~~ 126 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDK-FSPDDFLGSLELDLSILPRPAK 126 (133)
T ss_pred cccCcceEecCcEEEEEEEECcc-cCCCCcceEEEEEhhhcccccc
Confidence 13589999999999 8999999999999998876543
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.2e-10 Score=130.42 Aligned_cols=117 Identities=15% Similarity=0.201 Sum_probs=93.4
Q ss_pred eEEEEEEEEeeCCCCC------CCCCCCCcEEEEEECC-----EEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEE
Q 001703 536 WVLTVALVEGVNLASS------EMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVF 604 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~------d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~ 604 (1024)
..|+|+|+.|.+++.. +.....||||+|.+-| .+.+|+++.++.||+|||+|.|.+..+.-..|.|+||
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~ 549 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR 549 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence 4799999999987532 1123459999999953 5679999999999999999999987666678999999
Q ss_pred ecCCCCCCCccceEEEEEcccccCCCccceEEEccccccc-cccceeEEEEEE
Q 001703 605 DFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQ-SAQSKVHLRIFL 656 (1024)
Q Consensus 605 D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~g~l~l~~~~ 656 (1024)
|+|. .+.|+|+|++.|||..+..|.. |++|..+.+. .....|.+++.+
T Consensus 550 D~D~-~~~ddfiGq~~lPv~~Lr~GyR---~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 550 EYDM-SEKDDFGGQTCLPVSELRPGIR---SVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred ecCC-CCCCCeEEEEEcchhHhcCCce---eEeCcCCCCCCCCCEEEEEEEEe
Confidence 9998 7889999999999999998874 8999764443 344556666543
|
|
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.9e-11 Score=125.84 Aligned_cols=171 Identities=19% Similarity=0.265 Sum_probs=137.0
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEE-Ee--cCCCCeEEEEEEec
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFR-VH--NIDDEELVVSVFQH 68 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~-v~--~~~~~~L~v~V~d~ 68 (1024)
+.++.+++..|++|. ..|||+...++. .+.+|++..+++||.|+|+..+. +. +.....+++.|+|.
T Consensus 92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn 171 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDN 171 (362)
T ss_pred hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccC
Confidence 567899999999988 689999999964 34889999999999999999888 32 34456788889998
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecC--CCCCCCCccccEEEEEEEEEecCCeeeEEEEEeecc
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP--KTRKFTNKDCGKILLTISLNGKGHNLSSNRLLYLHS 146 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~--~~~~~~~~~~G~I~lsl~~~~~~~~l~v~v~~~~~~ 146 (1024)
+ + +...+++|+..+++..+...... ....|+.-.-+ +........+|+|.+++.|......+.+.+++| .
T Consensus 172 ~---~--~~~~~sqGq~r~~lkKl~p~q~k-~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l~vt~iRc--~ 243 (362)
T KOG1013|consen 172 D---K--KTHNESQGQSRVSLKKLKPLQRK-SFNICLEKSLPSERADRDEDEERGAILISLAYSSTTPGLIVTIIRC--S 243 (362)
T ss_pred c---c--cccccCcccchhhhhccChhhcc-hhhhhhhccCCcccccccchhhccceeeeeccCcCCCceEEEEEEe--e
Confidence 8 3 56889999999999988876431 12334433222 111222467999999999999999999999998 8
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCCCccccccccc
Q 001703 147 NVSSNESKELEDPCVLSHDVSCSKAPCLDVTEGNH 181 (1024)
Q Consensus 147 ~L~~~~~~g~sdp~vkv~l~~~~~~~~~~~~~~~~ 181 (1024)
.|..+|.+|.+||||+.++.++.....+++++..+
T Consensus 244 ~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K 278 (362)
T KOG1013|consen 244 HLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKK 278 (362)
T ss_pred eeeccccCCCCCccceeecCCCcchhhcccCcchh
Confidence 89999999999999999999988888888887775
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-09 Score=129.21 Aligned_cols=122 Identities=19% Similarity=0.187 Sum_probs=102.0
Q ss_pred CeEEEEEEEEeeCCCCCC------------------CCCCCCcEEEEEECCE-EEeeecccCC-CCCeEeEEEEEEeecC
Q 001703 535 GWVLTVALVEGVNLASSE------------------MTGLSDPYVVFTCNGK-TRTSSVQLQT-CDPQWHDILEFDAMEE 594 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d------------------~~g~~DPyv~v~~~~~-~~kT~~~~~t-~nP~WnE~f~f~~~~~ 594 (1024)
.|.|.|+|.+|++|+.++ ..+++||||.|.+++. .-+|+++.+. .||+|||.|.++ ..+
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~-~ah 85 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIY-CAH 85 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEe-ecc
Confidence 478999999999998632 1357899999999865 5599999884 699999999999 677
Q ss_pred CCCeEEEEEEecCCCCCCCccceEEEEEcccccCCCccceEEEcccccccccc--ceeEEEEEEecc
Q 001703 595 PPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQ--SKVHLRIFLENN 659 (1024)
Q Consensus 595 ~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~--g~l~l~~~~~~~ 659 (1024)
....+.|+|.|.|. ++. .+||++.||+.++..+...+.|+++.+..+++.. .+||+++.+...
T Consensus 86 ~~~~v~f~vkd~~~-~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 86 MASNIIFTVKDDNP-IGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred CcceEEEEEecCCc-cCc-eEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 78999999999997 665 5999999999999999999999999886666543 488888876543
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.3e-11 Score=135.34 Aligned_cols=129 Identities=22% Similarity=0.511 Sum_probs=104.8
Q ss_pred cCCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--------------------------CE-----EEeeecccCCCC
Q 001703 532 QGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--------------------------GK-----TRTSSVQLQTCD 580 (1024)
Q Consensus 532 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~--------------------------~~-----~~kT~~~~~t~n 580 (1024)
..+...+.|.+.+|+||.++|.+|.||||+...+- |. .+-|.++++|+|
T Consensus 110 k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLn 189 (1103)
T KOG1328|consen 110 KPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLN 189 (1103)
T ss_pred CCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCC
Confidence 34556788899999999999999999999998761 00 135788999999
Q ss_pred CeEeEEEEEEeecCCCCeEEEEEEecCCC---------------C-----------------C---CCccceEEEEEccc
Q 001703 581 PQWHDILEFDAMEEPPSVLDVEVFDFDGP---------------F-----------------D---QATSLGHAEINFLK 625 (1024)
Q Consensus 581 P~WnE~f~f~~~~~~~~~L~v~V~D~d~~---------------~-----------------~---~dd~lG~~~i~l~~ 625 (1024)
|+|+|.|.|.+-+-....+++.|||+|-- + + .|||+|.+.|||.+
T Consensus 190 PkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~E 269 (1103)
T KOG1328|consen 190 PKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAE 269 (1103)
T ss_pred cchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhc
Confidence 99999999997677778999999999830 0 2 38999999999999
Q ss_pred ccCCCccceEEEccccccc-cccceeEEEEEEeccCC
Q 001703 626 HTSTELADMWVSLEGKLAQ-SAQSKVHLRIFLENNNG 661 (1024)
Q Consensus 626 l~~~~~~~~w~~L~~~~~~-~~~g~l~l~~~~~~~~~ 661 (1024)
+...+ .+.||.|++.+.+ ..+|.++|.+++....+
T Consensus 270 iP~~G-ld~WFkLepRS~~S~VqG~~~LklwLsT~e~ 305 (1103)
T KOG1328|consen 270 IPPDG-LDQWFKLEPRSDKSKVQGQVKLKLWLSTKEE 305 (1103)
T ss_pred CCcch-HHHHhccCcccccccccceEEEEEEEeeecc
Confidence 97755 6889999996544 56999999999875543
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-09 Score=127.09 Aligned_cols=117 Identities=16% Similarity=0.179 Sum_probs=94.9
Q ss_pred eEEEEEEEEeeCCCCC------CCCCCCCcEEEEEECC-----EEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEE
Q 001703 536 WVLTVALVEGVNLASS------EMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVF 604 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~------d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~ 604 (1024)
..|.|+|+.|.+++.. +.....||||+|.+-| .+.+|++..++.||+|||+|+|.+..+.-..|+|+|+
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~ 548 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH 548 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence 4799999999987521 2234579999999953 3568899999999999999999987777789999999
Q ss_pred ecCCCCCCCccceEEEEEcccccCCCccceEEEcccccccc-ccceeEEEEEE
Q 001703 605 DFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIFL 656 (1024)
Q Consensus 605 D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~~ 656 (1024)
|+|. .+.|+|+|++.||+..|..|.. .++|..+.+.. ...+|.+++.+
T Consensus 549 d~d~-~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 549 EHDI-NEKDDFGGQTCLPVSEIRQGIH---AVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred ECCC-CCCCCEEEEEEcchHHhhCccc---eEeccCCCcCCCCCCeeEEEEEe
Confidence 9998 6899999999999999999876 45887755443 45577777754
|
|
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.3e-09 Score=119.93 Aligned_cols=112 Identities=21% Similarity=0.337 Sum_probs=88.4
Q ss_pred cEEEEEEEEeecCC-----------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEe
Q 001703 4 TRLYVYVLQGQDLL-----------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQ 67 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~-----------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d 67 (1024)
..|.|+|+.|.+++ ..||||+|.+.+ .+++|++..|+.||+|||+|.|.+..+.-..|+|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 57999999999863 368999999953 34788888889999999999999877778889999999
Q ss_pred cCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 68 HNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 68 ~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
+| ..++++|+|+..+|+..+..+ -.+++|... .+. .-..-.|++.+.|
T Consensus 489 ~D-----~~~~ddfiGQ~~LPv~~Lr~G------yR~VpL~~~-~g~--~l~~~~Ll~~f~~ 536 (537)
T PLN02223 489 YE-----VSTADAFCGQTCLPVSELIEG------IRAVPLYDE-RGK--ACSSTMLLTRFKW 536 (537)
T ss_pred cC-----CCCCCcEEEEEecchHHhcCC------ceeEeccCC-CcC--CCCCceEEEEEEe
Confidence 99 356899999999999999974 457888733 322 2233466666554
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-09 Score=124.83 Aligned_cols=117 Identities=17% Similarity=0.283 Sum_probs=95.7
Q ss_pred EEEEEEEEeeCCCCCCC----CCCCCcEEEEEECCE-----EEeee-cccCCCCCeEeEEEEEEeecCCCCeEEEEEEec
Q 001703 537 VLTVALVEGVNLASSEM----TGLSDPYVVFTCNGK-----TRTSS-VQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDF 606 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~----~g~~DPyv~v~~~~~-----~~kT~-~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~ 606 (1024)
+|.|+|+.|.++++.-. ...+||||.|++.|. ..+|+ +..++.||.|+|+|+|.+..+.-..|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 79999999997665432 245899999999653 56899 578899999999999998888888999999999
Q ss_pred CCCCCCCccceEEEEEcccccCCCccceEEEccccccc-cccceeEEEEEEe
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQ-SAQSKVHLRIFLE 657 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~g~l~l~~~~~ 657 (1024)
|. .++|||+|+.+||+..|..|..+. +|.+..|. -...+|.+++.+.
T Consensus 697 d~-~~~ddF~GQ~tlP~~~L~~GyRhV---pL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DY-IGKDDFIGQTTLPVSELRQGYRHV---PLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred CC-CCcccccceeeccHHHhhCceeee---eecCCCCccccceeEEEEEEEe
Confidence 99 689999999999999999988764 77664333 3456788877664
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.2e-09 Score=101.11 Aligned_cols=86 Identities=23% Similarity=0.332 Sum_probs=74.0
Q ss_pred EEEEEEEEeecCC----------CCCcEEEEEECC---eEEeeecccCCCC--CeEeeEEEEEEec--------------
Q 001703 5 RLYVYVLQGQDLL----------AKDSYVKVQIGK---HKSKSRILKNNSN--PVWNEEFVFRVHN-------------- 55 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~----------~~DPyv~v~l~~---~~~rT~v~~~t~n--P~WnE~f~f~v~~-------------- 55 (1024)
.|+|.|.+|++++ .+||||++.+.+ .+++|.+..+++| |.||+.|.|.+..
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 3899999999965 289999999964 4699999999999 9999999999652
Q ss_pred ---------CCCCeEEEEEEecCCCCCCCCCCCCeeEEEEEeCcccccc
Q 001703 56 ---------IDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAE 95 (1024)
Q Consensus 56 ---------~~~~~L~v~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~ 95 (1024)
.....|.++|||.| + .++|++||++.++|..+...
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D---~--~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDND---K--FSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred ccccCcceEecCcEEEEEEEECc---c--cCCCCcceEEEEEhhhcccc
Confidence 23578999999999 4 57899999999999988764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.5e-09 Score=95.91 Aligned_cols=94 Identities=35% Similarity=0.656 Sum_probs=80.3
Q ss_pred EEEEEEEeecCC------CCCcEEEEEECC-eEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCC
Q 001703 6 LYVYVLQGQDLL------AKDSYVKVQIGK-HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (1024)
Q Consensus 6 L~V~V~~Ar~L~------~~DPyv~v~l~~-~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~ 78 (1024)
|.|+|++|++|. .+||||.+.+.+ ...+|+++.++.||.|||.|.|.+.......|.|+||+.+ . .+.
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~---~--~~~ 75 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKD---R--FSK 75 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecC---C--CCC
Confidence 579999999997 689999999987 7899999999999999999999985447889999999999 3 356
Q ss_pred CCeeEEEEEeCcccc-ccCCCCCCCEEEEe
Q 001703 79 GELMGRVRVPVSSIA-AEDNHMLPPTWFSL 107 (1024)
Q Consensus 79 d~~lG~~~i~L~~l~-~~~~~~~~~~W~~L 107 (1024)
+.+||++.+++.++. .. .....|++|
T Consensus 76 ~~~ig~~~~~l~~l~~~~---~~~~~~~~l 102 (102)
T cd00030 76 DDFLGEVEIPLSELLDSG---KEGELWLPL 102 (102)
T ss_pred CceeEEEEEeHHHhhhcC---CcCcceecC
Confidence 899999999999988 32 336678765
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.6e-09 Score=121.08 Aligned_cols=117 Identities=14% Similarity=0.184 Sum_probs=93.1
Q ss_pred eEEEEEEEEeeCCC----C--CCCCCCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEE
Q 001703 536 WVLTVALVEGVNLA----S--SEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVF 604 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~----~--~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~ 604 (1024)
..|+|+|+.|.+++ . .+.....||||+|.+. ..+.+|+++.++.||+|||+|+|.+..+.-..|+|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 47999999998853 1 1123457999999995 34679999999999999999999987766789999999
Q ss_pred ecCCCCCCCccceEEEEEcccccCCCccceEEEcccccccc-ccceeEEEEEE
Q 001703 605 DFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIFL 656 (1024)
Q Consensus 605 D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~~ 656 (1024)
|+|. .+.|+|+|++.||+..|..|.. .++|..+.+.. ...+|.+++.+
T Consensus 532 d~D~-~~~ddfigq~~lPv~~Lr~GyR---~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 532 EYDM-SEKDDFGGQTCLPVWELSQGIR---AFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred ECCC-CCCCcEEEEEEcchhhhhCccc---eEEccCCCcCCCCCeeEEEEEEe
Confidence 9998 6889999999999999998876 45887754443 34567776654
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-08 Score=120.13 Aligned_cols=120 Identities=17% Similarity=0.186 Sum_probs=96.4
Q ss_pred eEEEEEEEEeeCCCC---CC---CCCCCCcEEEEEECC-----EEEeeecccCCCCCeE-eEEEEEEeecCCCCeEEEEE
Q 001703 536 WVLTVALVEGVNLAS---SE---MTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQW-HDILEFDAMEEPPSVLDVEV 603 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~---~d---~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W-nE~f~f~~~~~~~~~L~v~V 603 (1024)
..|+|+|+.|.+|+. .+ .....||||+|.+.| .+++|+++.++.||+| ||+|+|.+..+.-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999998731 11 123479999999843 4679999999999999 99999998776677999999
Q ss_pred EecCCCCCCCccceEEEEEcccccCCCccceEEEcccccccc-ccceeEEEEEEecc
Q 001703 604 FDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIFLENN 659 (1024)
Q Consensus 604 ~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~~~~~ 659 (1024)
+|+|. .+.|+|+|++.|||..|..|.. .++|.++.+.. ...+|.+++.+...
T Consensus 511 ~D~d~-~~~d~figq~~lPv~~Lr~GYR---~VpL~~~~G~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 511 QDYDN-DTQNDFAGQTCLPLPELKSGVR---AVRLHDRAGKAYKNTRLLVSFALDPP 563 (567)
T ss_pred EeCCC-CCCCCEEEEEEcchhHhhCCee---EEEccCCCCCCCCCeEEEEEEEEcCc
Confidence 99998 6899999999999999988875 46887754444 45678888887643
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.8e-08 Score=118.81 Aligned_cols=96 Identities=27% Similarity=0.369 Sum_probs=81.4
Q ss_pred CcEEEEEEEEeecCC------------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEE
Q 001703 3 STRLYVYVLQGQDLL------------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSV 65 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V 65 (1024)
...|.|+|+.|.+|+ ..||||+|.+.+ .+.+|+++.++.||+|||+|.|.+..+.-..|+|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 357999999998874 248999999943 468999999999999999999998766667899999
Q ss_pred EecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeec
Q 001703 66 FQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109 (1024)
Q Consensus 66 ~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~ 109 (1024)
+|+| . .+.++|+|+..+||..+..+ ..|++|.+
T Consensus 549 ~D~D---~--~~~ddfiGq~~lPv~~Lr~G------yR~VpL~~ 581 (599)
T PLN02952 549 REYD---M--SEKDDFGGQTCLPVSELRPG------IRSVPLHD 581 (599)
T ss_pred EecC---C--CCCCCeEEEEEcchhHhcCC------ceeEeCcC
Confidence 9999 3 46899999999999999974 45999973
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.1e-09 Score=117.08 Aligned_cols=131 Identities=16% Similarity=0.340 Sum_probs=108.2
Q ss_pred eEEEEEEEEeeCCCCCCC-CCCCCcEEEEEECCEEEeeecccCCCCCeEe-EEEEEEeecC--CCCeEEEEEEecCCCCC
Q 001703 536 WVLTVALVEGVNLASSEM-TGLSDPYVVFTCNGKTRTSSVQLQTCDPQWH-DILEFDAMEE--PPSVLDVEVFDFDGPFD 611 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~-~g~~DPyv~v~~~~~~~kT~~~~~t~nP~Wn-E~f~f~~~~~--~~~~L~v~V~D~d~~~~ 611 (1024)
|.|.|++..|++||-+|. ....|.||.|++++..+||.+..+++||.|| +.|.|++.+. ....|.|++.|+|. ++
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt-ys 81 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT-YS 81 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc-cc
Confidence 678999999999999986 4568999999999999999999999999999 7899996432 34589999999999 99
Q ss_pred CCccceEEEEEcccccCC----------CccceEEEccccccccccceeEEEEEEeccCCchhhhhh
Q 001703 612 QATSLGHAEINFLKHTST----------ELADMWVSLEGKLAQSAQSKVHLRIFLENNNGVETIKEY 668 (1024)
Q Consensus 612 ~dd~lG~~~i~l~~l~~~----------~~~~~w~~L~~~~~~~~~g~l~l~~~~~~~~~~~~~~~~ 668 (1024)
.+|-||.+.|++..+... .....|+|+-+.-. ...|+|.+.+.+...++....++.
T Consensus 82 andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih-girgeinvivkvdlfndlnkf~qs 147 (1169)
T KOG1031|consen 82 ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH-GIRGEINVIVKVDLFNDLNKFPQS 147 (1169)
T ss_pred cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc-cccceeEEEEEEeehhhhhhcccc
Confidence 999999999999886432 34467999976321 247899999988777776665553
|
|
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-08 Score=93.08 Aligned_cols=86 Identities=33% Similarity=0.606 Sum_probs=75.0
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCe---EEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCC
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQIGKH---KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLF 75 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~---~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~ 75 (1024)
.|.|+|++|++|. ..+|||++++... ..+|+++.++.||.|||+|.|.+.......|.|+|||.+ .
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~---~-- 75 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKD---R-- 75 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecC---C--
Confidence 3789999999998 4899999999875 799999999999999999999986444899999999998 2
Q ss_pred CCCCCeeEEEEEeCcccccc
Q 001703 76 GSSGELMGRVRVPVSSIAAE 95 (1024)
Q Consensus 76 ~~~d~~lG~~~i~L~~l~~~ 95 (1024)
.+.+.++|.+.+++.++..+
T Consensus 76 ~~~~~~~G~~~~~l~~~~~~ 95 (101)
T smart00239 76 FGRDDFIGQVTIPLSDLLLG 95 (101)
T ss_pred ccCCceeEEEEEEHHHcccC
Confidence 45689999999999888764
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-08 Score=91.83 Aligned_cols=84 Identities=17% Similarity=0.311 Sum_probs=72.1
Q ss_pred EEEEEEEeeCCCCCC---CCCCCCcEEEEEECCE-EEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCC
Q 001703 538 LTVALVEGVNLASSE---MTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 613 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d---~~g~~DPyv~v~~~~~-~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~d 613 (1024)
|.|+|..++|+...+ ..+.+||||.|++++. +.||++ +.||.|||+|.|++ +....+.+.|||+.. +..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~V--dk~nEiel~VyDk~~--~~~ 73 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV--EKNNEEEVIVYDKGG--DQP 73 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEe--cCCcEEEEEEEeCCC--Cee
Confidence 579999999999887 5788999999999976 778887 48999999999996 457899999999876 566
Q ss_pred ccceEEEEEcccccC
Q 001703 614 TSLGHAEINFLKHTS 628 (1024)
Q Consensus 614 d~lG~~~i~l~~l~~ 628 (1024)
-.||-.-+.++++..
T Consensus 74 ~Pi~llW~~~sdi~E 88 (109)
T cd08689 74 VPVGLLWLRLSDIAE 88 (109)
T ss_pred cceeeehhhHHHHHH
Confidence 788999999888653
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.5e-08 Score=119.58 Aligned_cols=119 Identities=18% Similarity=0.327 Sum_probs=97.7
Q ss_pred CcEEEEEEEEeecCC------------------------CCCcEEEEEECCeE-EeeecccCC-CCCeEeeEEEEEEecC
Q 001703 3 STRLYVYVLQGQDLL------------------------AKDSYVKVQIGKHK-SKSRILKNN-SNPVWNEEFVFRVHNI 56 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------------------------~~DPyv~v~l~~~~-~rT~v~~~t-~nP~WnE~f~f~v~~~ 56 (1024)
++.|.|+|++|++|+ .+||||.|.+++.+ .||+++.+. .||.|||.|.+.+ ..
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~-ah 85 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYC-AH 85 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEee-cc
Confidence 688999999999885 35999999998765 899999984 6999999999998 46
Q ss_pred CCCeEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEecC
Q 001703 57 DDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKG 133 (1024)
Q Consensus 57 ~~~~L~v~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~ 133 (1024)
.-..+.|.|.|.| . -...+||++.||+.++..++ ....|+++.... +++ .+...+|+++++|.+-.
T Consensus 86 ~~~~v~f~vkd~~---~---~g~~~ig~~~~p~~~~~~g~---~i~~~~~~~~~~-~~p-~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 86 MASNIIFTVKDDN---P---IGATLIGRAYIPVEEILDGE---EVDRWVEILDND-KNP-IHGGSKIHVKLQYFEVT 151 (808)
T ss_pred CcceEEEEEecCC---c---cCceEEEEEEEEHHHhcCCC---ccccEEeccCCC-CCc-CCCCCEEEEEEEEEEcc
Confidence 6789999999999 2 35669999999999998753 478899998443 332 33456999999998753
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.8e-08 Score=115.00 Aligned_cols=113 Identities=26% Similarity=0.389 Sum_probs=88.2
Q ss_pred CcEEEEEEEEeecCC------------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEE
Q 001703 3 STRLYVYVLQGQDLL------------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSV 65 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V 65 (1024)
..+|.|+|+.+.+++ ..||||+|.+-+ .+.+|++..++.||+|||+|.|.+..+.-..|+|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 357999999999864 269999999942 347899999999999999999998777788999999
Q ss_pred EecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 66 FQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 66 ~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
+|+| ..++++|+|+..+|+..|..+ -..++|.+..+ . .-..-.|++.+.+
T Consensus 548 ~d~d-----~~~~ddfiGQ~~lPv~~Lr~G------yR~V~L~~~~G-~--~l~~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHD-----INEKDDFGGQTCLPVSEIRQG------IHAVPLFNRKG-V--KYSSTRLLMRFEF 597 (598)
T ss_pred EECC-----CCCCCCEEEEEEcchHHhhCc------cceEeccCCCc-C--CCCCCeeEEEEEe
Confidence 9999 357899999999999999874 34678873332 2 1223456666554
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.7e-09 Score=121.83 Aligned_cols=94 Identities=24% Similarity=0.387 Sum_probs=83.2
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCE-------EEeeecccCCCCCeEeEEEEEEeecCCC----CeEEEE
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-------TRTSSVQLQTCDPQWHDILEFDAMEEPP----SVLDVE 602 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~~~~~t~nP~WnE~f~f~~~~~~~----~~L~v~ 602 (1024)
..-.|.|.|+.|+++.+.|.+|.|||||+|.++-+ ..+|+++.+|+||+|+|.|+|.|..++. ..|.|+
T Consensus 945 n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen 945 NAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred cccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEE
Confidence 34578899999999999999999999999999743 4599999999999999999999865543 479999
Q ss_pred EEecCCCCCCCccceEEEEEcccccC
Q 001703 603 VFDFDGPFDQATSLGHAEINFLKHTS 628 (1024)
Q Consensus 603 V~D~d~~~~~dd~lG~~~i~l~~l~~ 628 (1024)
|+|+|- ++.+||-|++.+.|..+..
T Consensus 1025 VMDHD~-L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1025 VMDHDY-LRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred eeccce-ecccccchHHHHhhCCCCC
Confidence 999998 8999999999999998753
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.5e-08 Score=112.44 Aligned_cols=113 Identities=23% Similarity=0.375 Sum_probs=87.5
Q ss_pred CcEEEEEEEEeecCC------------CCCcEEEEEEC-----CeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEE
Q 001703 3 STRLYVYVLQGQDLL------------AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSV 65 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------------~~DPyv~v~l~-----~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V 65 (1024)
...|+|+|+.|.+++ ..||||+|.+. ..+.+|+++.++.||+|||+|.|.+..+.-..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 357999999998742 36899999994 2458999999999999999999998767778999999
Q ss_pred EecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 66 FQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 66 ~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
+|+| ..+.++|+|+..+|+..|..+ -..++|.+..+ . .-..-.|.+.+.+
T Consensus 531 ~d~D-----~~~~ddfigq~~lPv~~Lr~G------yR~V~L~~~~g-~--~l~~a~Lfv~~~~ 580 (581)
T PLN02222 531 HEYD-----MSEKDDFGGQTCLPVWELSQG------IRAFPLHSRKG-E--KYKSVKLLVKVEF 580 (581)
T ss_pred EECC-----CCCCCcEEEEEEcchhhhhCc------cceEEccCCCc-C--CCCCeeEEEEEEe
Confidence 9998 356899999999999999874 34678873332 2 1223456665554
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.8e-08 Score=112.97 Aligned_cols=101 Identities=20% Similarity=0.259 Sum_probs=85.3
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC------CEEEeeecccCCCCCeEe-EEEEEEeecCCCCeEEEEEEecC
Q 001703 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN------GKTRTSSVQLQTCDPQWH-DILEFDAMEEPPSVLDVEVFDFD 607 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~------~~~~kT~~~~~t~nP~Wn-E~f~f~~~~~~~~~L~v~V~D~d 607 (1024)
...|.|+|+.|+.|+... .|.+-|||.|.+- +..++|.++.+++||+|| |.|+|++..+.-..|+|.|+|.|
T Consensus 1064 p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred ceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence 358999999999999644 5667799999984 334456668999999999 99999988887889999999999
Q ss_pred CCCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
. |+...|||+++.|+..+..|-. .+||..
T Consensus 1143 m-fs~~~FiaqA~yPv~~ik~GfR---sVpLkN 1171 (1267)
T KOG1264|consen 1143 M-FSDPNFLAQATYPVKAIKSGFR---SVPLKN 1171 (1267)
T ss_pred c-cCCcceeeeeecchhhhhccce---eeeccc
Confidence 9 8988999999999999887754 357765
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.4e-08 Score=118.21 Aligned_cols=94 Identities=19% Similarity=0.420 Sum_probs=83.6
Q ss_pred CCeEEEEEEEEeeCCCCCC--CCCCCCcEEEEEECCE-EEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCC
Q 001703 534 DGWVLTVALVEGVNLASSE--MTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPF 610 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d--~~g~~DPyv~v~~~~~-~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~ 610 (1024)
.-|+|.|+|.+|++|...+ .+++.|||+.+.+.++ .-||+++++++||+|||+|-.. ...-.+.|.++|||++. +
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~-lns~~d~L~LslyD~n~-~ 511 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYIL-LNSFTDPLNLSLYDFNS-F 511 (1227)
T ss_pred eeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEE-ecccCCceeEEEEeccc-c
Confidence 5689999999999999998 5899999999998654 3499999999999999999998 55667899999999988 7
Q ss_pred CCCccceEEEEEcccccCC
Q 001703 611 DQATSLGHAEINFLKHTST 629 (1024)
Q Consensus 611 ~~dd~lG~~~i~l~~l~~~ 629 (1024)
.+|+.+|++.++|..+...
T Consensus 512 ~sd~vvG~~~l~L~~L~~~ 530 (1227)
T COG5038 512 KSDKVVGSTQLDLALLHQN 530 (1227)
T ss_pred CCcceeeeEEechHHhhhc
Confidence 9999999999999887543
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.66 E-value=2e-07 Score=109.50 Aligned_cols=115 Identities=19% Similarity=0.323 Sum_probs=91.4
Q ss_pred cEEEEEEEEeecCC------------CCCcEEEEEECC-----eEEeeecccCCCCCeE-eeEEEEEEecCCCCeEEEEE
Q 001703 4 TRLYVYVLQGQDLL------------AKDSYVKVQIGK-----HKSKSRILKNNSNPVW-NEEFVFRVHNIDDEELVVSV 65 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~------------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~W-nE~f~f~v~~~~~~~L~v~V 65 (1024)
..|.|+|+.|.+|+ ..||||+|.+.+ .+.+|++++++.||+| ||+|.|.+..+.-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 47999999999872 268999999942 3579999999999999 99999998767778999999
Q ss_pred EecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001703 66 FQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (1024)
Q Consensus 66 ~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (1024)
+|+| ..+.++|+|+..+|+..|..+ -..++|.+..+ . .-....|++.+.+.+.
T Consensus 511 ~D~d-----~~~~d~figq~~lPv~~Lr~G------YR~VpL~~~~G-~--~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 511 QDYD-----NDTQNDFAGQTCLPLPELKSG------VRAVRLHDRAG-K--AYKNTRLLVSFALDPP 563 (567)
T ss_pred EeCC-----CCCCCCEEEEEEcchhHhhCC------eeEEEccCCCC-C--CCCCeEEEEEEEEcCc
Confidence 9998 356899999999999999863 44678873332 2 2345678888887654
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.4e-08 Score=112.19 Aligned_cols=112 Identities=21% Similarity=0.405 Sum_probs=87.8
Q ss_pred EEEEEEEEeecCC----------CCCcEEEEEECC-----eEEeee-cccCCCCCeEeeEEEEEEecCCCCeEEEEEEec
Q 001703 5 RLYVYVLQGQDLL----------AKDSYVKVQIGK-----HKSKSR-ILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQH 68 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~----------~~DPyv~v~l~~-----~~~rT~-v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~ 68 (1024)
+|+|.|+.+.+++ .+||||.|.+-+ ...+|+ +..|+-||.|+|+|.|.+..+.-.-|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 6999999999776 479999999954 348999 556699999999999999888889999999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEE
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLN 130 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~ 130 (1024)
| ..++|+|+|+..+|+..|..+ -.-++|... .|. .-..-.|.+.+.+.
T Consensus 697 d-----~~~~ddF~GQ~tlP~~~L~~G------yRhVpL~~~-~G~--~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 D-----YIGKDDFIGQTTLPVSELRQG------YRHVPLLSR-EGE--ALSSASLFVRIAIV 744 (746)
T ss_pred C-----CCCcccccceeeccHHHhhCc------eeeeeecCC-CCc--cccceeEEEEEEEe
Confidence 9 467899999999999999874 234777722 222 23344566655553
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-07 Score=84.48 Aligned_cols=79 Identities=24% Similarity=0.441 Sum_probs=67.8
Q ss_pred EEEEEEEeecCC---------CCCcEEEEEECCe-EEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCC
Q 001703 6 LYVYVLQGQDLL---------AKDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLF 75 (1024)
Q Consensus 6 L~V~V~~Ar~L~---------~~DPyv~v~l~~~-~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~ 75 (1024)
|.|+|..|||+. .+||||.|+++.. +.||+.. .||.|||+|.|.+ .....+.+.|||..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~V--dk~nEiel~VyDk~------ 69 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS---RNDRWNEDFEIPV--EKNNEEEVIVYDKG------ 69 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC---CCCcccceEEEEe--cCCcEEEEEEEeCC------
Confidence 689999999999 5799999999875 7999884 7999999999999 36899999999988
Q ss_pred CCCCCeeEEEEEeCcccccc
Q 001703 76 GSSGELMGRVRVPVSSIAAE 95 (1024)
Q Consensus 76 ~~~d~~lG~~~i~L~~l~~~ 95 (1024)
....-.||-.-++++++...
T Consensus 70 ~~~~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 70 GDQPVPVGLLWLRLSDIAEE 89 (109)
T ss_pred CCeecceeeehhhHHHHHHH
Confidence 23556899988899888754
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.6e-07 Score=104.70 Aligned_cols=118 Identities=21% Similarity=0.459 Sum_probs=98.6
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEECCeEEeeecccCCCCCeEe-eEEEEEEe--cCCCCeEEEEEEecCCCC
Q 001703 3 STRLYVYVLQGQDLL-------AKDSYVKVQIGKHKSKSRILKNNSNPVWN-EEFVFRVH--NIDDEELVVSVFQHNDDS 72 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~~~~rT~v~~~t~nP~Wn-E~f~f~v~--~~~~~~L~v~V~d~d~~~ 72 (1024)
.++|.|.|..||+|+ ..|.||.|++++..++|.+..+++||.|| +.|.|+|. +..+..|.+.+.|+|
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~d--- 78 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHD--- 78 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccc---
Confidence 368999999999999 57899999999999999999999999999 78999987 566789999999999
Q ss_pred CCCCCCCCeeEEEEEeCcccccc-------CCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEE
Q 001703 73 GLFGSSGELMGRVRVPVSSIAAE-------DNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLN 130 (1024)
Q Consensus 73 ~f~~~~d~~lG~~~i~L~~l~~~-------~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~ 130 (1024)
.-+.+|-||.+.|.+..+-.. +.++....|+++.+.- ...+|+|.+-+...
T Consensus 79 --tysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-----hgirgeinvivkvd 136 (1169)
T KOG1031|consen 79 --TYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-----HGIRGEINVIVKVD 136 (1169)
T ss_pred --ccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-----ccccceeEEEEEEe
Confidence 457899999999998887643 2335667899998332 34689988876654
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.2e-06 Score=102.96 Aligned_cols=116 Identities=11% Similarity=0.184 Sum_probs=88.3
Q ss_pred CCeEEEEEEEEeeCCCCC----CCC-CCCCcEEEEEECCEE-EeeecccCCCCCeEeEEEEEEeecCCC-CeEEEEEEec
Q 001703 534 DGWVLTVALVEGVNLASS----EMT-GLSDPYVVFTCNGKT-RTSSVQLQTCDPQWHDILEFDAMEEPP-SVLDVEVFDF 606 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~----d~~-g~~DPyv~v~~~~~~-~kT~~~~~t~nP~WnE~f~f~~~~~~~-~~L~v~V~D~ 606 (1024)
-.|.|.++|.+|+-+... +.. ...||||.|.+++.+ -+| .+.-||+|||.|.+++ .+.. ..+.|+|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~-ah~~~~~~~f~vk~- 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILC-AHPLDSTITITLKT- 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEe-eeecCCcEEEEEec-
Confidence 357999999999843322 111 123999999998654 477 5566999999999995 4445 789999988
Q ss_pred CCCCCCCccceEEEEEcccccCCCc-cceEEEccccccccccc-eeEEEEEEecc
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTEL-ADMWVSLEGKLAQSAQS-KVHLRIFLENN 659 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~-~~~w~~L~~~~~~~~~g-~l~l~~~~~~~ 659 (1024)
+ ..+||++.||+.++..+.. .+.|+++.+..+++..| +|++++.+...
T Consensus 83 ~-----~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 132 (758)
T PLN02352 83 K-----CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPA 132 (758)
T ss_pred C-----CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEh
Confidence 2 3699999999999988865 89999998876666555 88888876543
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=9.1e-07 Score=102.73 Aligned_cols=88 Identities=26% Similarity=0.397 Sum_probs=76.3
Q ss_pred CcEEEEEEEEeecCC-----CCCcEEEEEECC------eEEeeecccCCCCCeEe-eEEEEEEecCCCCeEEEEEEecCC
Q 001703 3 STRLYVYVLQGQDLL-----AKDSYVKVQIGK------HKSKSRILKNNSNPVWN-EEFVFRVHNIDDEELVVSVFQHND 70 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~-----~~DPyv~v~l~~------~~~rT~v~~~t~nP~Wn-E~f~f~v~~~~~~~L~v~V~d~d~ 70 (1024)
.++|.|.|+.||.|+ .+-|||.|.+-+ ..++|.+..|++||+|| |+|+|+|..+.-..|+|.|+|.|
T Consensus 1064 p~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD- 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED- 1142 (1267)
T ss_pred ceEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc-
Confidence 478999999999999 355999999843 34677778899999999 99999999999999999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCcccccc
Q 001703 71 DSGLFGSSGELMGRVRVPVSSIAAE 95 (1024)
Q Consensus 71 ~~~f~~~~d~~lG~~~i~L~~l~~~ 95 (1024)
..+...|||++..|+..+..+
T Consensus 1143 ----mfs~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1143 ----MFSDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred ----ccCCcceeeeeecchhhhhcc
Confidence 356677999999999998874
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-05 Score=97.07 Aligned_cols=114 Identities=18% Similarity=0.317 Sum_probs=88.4
Q ss_pred CCcEEEEEEEEeecCC-----------CCCcEEEEEECCeE-EeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecC
Q 001703 2 VSTRLYVYVLQGQDLL-----------AKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHN 69 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~-----------~~DPyv~v~l~~~~-~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d 69 (1024)
.++.|.++|++|+-+. ..||||.|.+++.+ .|| .+..||+|+|.|.+.+.......+.|+|.|-
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~~- 83 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKTK- 83 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEecC-
Confidence 4688999999998543 23999999998765 788 6667999999999998544447899999762
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEecC
Q 001703 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKG 133 (1024)
Q Consensus 70 ~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~ 133 (1024)
..+||++.||+.++..++ .....|+++... .+++. ...+|+++++|.+..
T Consensus 84 ---------~~~ig~~~~p~~~~~~g~--~~~~~~~~~~~~-~~~p~--~~~~~~~~~~~~~~~ 133 (758)
T PLN02352 84 ---------CSILGRFHIQAHQIVTEA--SFINGFFPLIME-NGKPN--PELKLRFMLWFRPAE 133 (758)
T ss_pred ---------CeEEEEEEEEHHHhhCCC--cccceEEEcccC-CCCCC--CCCEEEEEEEEEEhh
Confidence 379999999999998752 237889999843 33422 226999999998863
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.2e-06 Score=98.68 Aligned_cols=91 Identities=15% Similarity=0.274 Sum_probs=79.0
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEE-EEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCC
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYV-VFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQ 612 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv-~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~ 612 (1024)
-.|++.+++++|+ ++ ..|||. ++++|.+.+||.+.++|+||+||+...|.+........++.|||++. +++
T Consensus 52 ~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~ 123 (644)
T PLN02964 52 FSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR-LSK 123 (644)
T ss_pred ccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC-CCH
Confidence 4689999999998 44 358884 57889999999999999999999999999877777778999999999 899
Q ss_pred CccceEEEEEcccccCCCcc
Q 001703 613 ATSLGHAEINFLKHTSTELA 632 (1024)
Q Consensus 613 dd~lG~~~i~l~~l~~~~~~ 632 (1024)
++++|.++++|..+...+..
T Consensus 124 n~lv~~~e~~~t~f~~kqi~ 143 (644)
T PLN02964 124 NTLVGYCELDLFDFVTQEPE 143 (644)
T ss_pred HHhhhheeecHhhccHHHHH
Confidence 99999999999887665543
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.1e-06 Score=102.16 Aligned_cols=105 Identities=24% Similarity=0.301 Sum_probs=90.2
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeec---CCCCeEEEEEEec
Q 001703 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDF 606 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~---~~~~~L~v~V~D~ 606 (1024)
.|+|+|-|..|++|+-..-+..+||||+.++- ..++||+++++|.||.|||.+.+.-++ .....|.+.||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 57999999999999766557789999999994 347899999999999999999887322 2246899999999
Q ss_pred CCCCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
+. +..+.++|.+.|+|.++...+....||+|..
T Consensus 1603 ~~-~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1603 GG-LLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred cc-eeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 98 8999999999999999988888889999964
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.1e-06 Score=102.12 Aligned_cols=99 Identities=24% Similarity=0.444 Sum_probs=84.3
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEE-Ee--cCCCCeEEEEEEe
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFR-VH--NIDDEELVVSVFQ 67 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~-v~--~~~~~~L~v~V~d 67 (1024)
.+++|.|-|.-|++|+ .+||||+.|+.. .++||+++++|.||.|||.+.+. ++ ....+.|.++||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 3688999999999996 689999999963 35899999999999999999998 54 3556899999999
Q ss_pred cCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 68 HNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 68 ~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
.+ ....+.|+|.+.|||.++..... ...||.|.
T Consensus 1602 ~~-----~~~en~~lg~v~i~L~~~~l~kE---~~~Wy~lg 1634 (1639)
T KOG0905|consen 1602 NG-----GLLENVFLGGVNIPLLKVDLLKE---SVGWYNLG 1634 (1639)
T ss_pred cc-----ceeeeeeeeeeecchhhcchhhh---hcceeecc
Confidence 99 35678999999999999987532 45799997
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.79 E-value=4.3e-05 Score=71.05 Aligned_cols=100 Identities=21% Similarity=0.435 Sum_probs=77.0
Q ss_pred EEEEEEEeecCC-------------------CCCcEEEEEE----CCeEEeeecccCCCCCeEeeEEEEEEe----c---
Q 001703 6 LYVYVLQGQDLL-------------------AKDSYVKVQI----GKHKSKSRILKNNSNPVWNEEFVFRVH----N--- 55 (1024)
Q Consensus 6 L~V~V~~Ar~L~-------------------~~DPyv~v~l----~~~~~rT~v~~~t~nP~WnE~f~f~v~----~--- 55 (1024)
|.|.|++|.+|. .-|+||++.+ .++..+|+++-++-.|.|+..+.|.++ .
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 468899999988 3589999996 346699999999999999999999865 1
Q ss_pred --------CCCCeEEEEEEecCCCCCC-----CCCCCCeeEEEEEeCccccccCCCCCCCEEEEe
Q 001703 56 --------IDDEELVVSVFQHNDDSGL-----FGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107 (1024)
Q Consensus 56 --------~~~~~L~v~V~d~d~~~~f-----~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L 107 (1024)
.....+.++||+.....+. ...+|-.||.+.||+.+|... +.-...||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~--rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK--RSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc--ccCccccccC
Confidence 1236789999998743320 123566999999999999875 3446789975
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.70 E-value=3.6e-05 Score=82.22 Aligned_cols=87 Identities=24% Similarity=0.327 Sum_probs=71.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---C--EEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEecCCC
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCN---G--KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDGP 609 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~--~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d~~ 609 (1024)
-|.|+++++..|..+|.+|-+||||..++. + -+.+|++.++|+||.+|++|.|.+... ....+.|.|||.+.
T Consensus 234 ~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~- 312 (362)
T KOG1013|consen 234 GLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDI- 312 (362)
T ss_pred ceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCC-
Confidence 468999999999999999999999999885 2 356889999999999999999995221 23489999999998
Q ss_pred CCCCccceEEEEEcc
Q 001703 610 FDQATSLGHAEINFL 624 (1024)
Q Consensus 610 ~~~dd~lG~~~i~l~ 624 (1024)
....+++|-...-+.
T Consensus 313 G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 313 GKSNDSIGGSMLGGY 327 (362)
T ss_pred CcCccCCCccccccc
Confidence 567889987665443
|
|
| >KOG4347 consensus GTPase-activating protein VRP [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=6.8e-05 Score=86.92 Aligned_cols=105 Identities=20% Similarity=0.222 Sum_probs=81.5
Q ss_pred cCCCCcccccccccCCCccccccceeeeeec---ccccccceeeeecEEEEEeccCCCeEEEEEecccceeeEecccccc
Q 001703 683 RSPHRNSTFQKLFALPPEEFLIKDFTCYLKR---KMPLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLA 759 (1024)
Q Consensus 683 ~s~~k~~~f~~~f~l~~~e~l~~~~~c~~~~---~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~di~~i~k~~~~~~ 759 (1024)
.+..+++.| .+|+|| |.+.....|.++. ....+|+||++.+|+||.|.... .+.+++|+..|..|++...+ +
T Consensus 5 ~ar~~s~~f-~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~-~c~~~~Pl~~vr~ve~~~~s-s 79 (671)
T KOG4347|consen 5 DARLKSEDF-AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEW-LCSFITPLLAVRSVERLDDS-S 79 (671)
T ss_pred hhhhccccc-ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcc-cceEeeehhhhhhhhccCcc-c
Confidence 445788999 999999 9999999998765 45688999999999999999876 58999999999999998721 1
Q ss_pred ccCCCcEEEEEeccCCcccCCCccccCCCCceEEEEEeecChhHHHHHHHH
Q 001703 760 TVGSPSLVIILWKGRGLDARHGAKSQDEEGRLRFYFQSFVSFNDASRTIMA 810 (1024)
Q Consensus 760 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~~ 810 (1024)
.+++.+.+.+. +..-+.|+.+..|+..+.-+..
T Consensus 80 ----------------~~~~~i~~~~~--~~~~~~f~~~~~r~~~~~k~~~ 112 (671)
T KOG4347|consen 80 ----------------LFTQLISLFTS--NMVGMRFGGLTERLKLLSKLHL 112 (671)
T ss_pred ----------------cchhhhHHhhc--CcceEEecchhhHHHHHHHHhc
Confidence 12223333333 4468899999999997655543
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=97.32 E-value=9.6e-05 Score=88.99 Aligned_cols=81 Identities=26% Similarity=0.521 Sum_probs=72.4
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCeE--EeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCC
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQIGKHK--SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~~--~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~ 76 (1024)
.++|+|++|-+|. .+||||.+.+|+.. -++..+.+|+||+|++.|.+....+....|.+.|||+| ..
T Consensus 614 LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D-----~~ 688 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHD-----LE 688 (1105)
T ss_pred eEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEee-----cc
Confidence 4689999999999 69999999999876 78888999999999999999977788889999999999 36
Q ss_pred CCCCeeEEEEEeCc
Q 001703 77 SSGELMGRVRVPVS 90 (1024)
Q Consensus 77 ~~d~~lG~~~i~L~ 90 (1024)
++|+.||+..+.|.
T Consensus 689 ~~d~~iget~iDLE 702 (1105)
T KOG1326|consen 689 AQDEKIGETTIDLE 702 (1105)
T ss_pred cccchhhceehhhh
Confidence 78999999998873
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00039 Score=64.79 Aligned_cols=82 Identities=16% Similarity=0.250 Sum_probs=63.8
Q ss_pred CCcEEEEEEC----CEEEeeecccCCCCCeEeEEEEEEee----c---C--------CCCeEEEEEEecCCCC-------
Q 001703 557 SDPYVVFTCN----GKTRTSSVQLQTCDPQWHDILEFDAM----E---E--------PPSVLDVEVFDFDGPF------- 610 (1024)
Q Consensus 557 ~DPyv~v~~~----~~~~kT~~~~~t~nP~WnE~f~f~~~----~---~--------~~~~L~v~V~D~d~~~------- 610 (1024)
-++||.+.+. ++.++|+++-++-.|.||-.++|.+. . . ...++.++||+.+...
T Consensus 33 VN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~ 112 (143)
T cd08683 33 VNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKI 112 (143)
T ss_pred cceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceecc
Confidence 5899999963 67889999999999999999999853 0 1 1347999999986411
Q ss_pred --CCCccceEEEEEccccc-CCCccceEEEc
Q 001703 611 --DQATSLGHAEINFLKHT-STELADMWVSL 638 (1024)
Q Consensus 611 --~~dd~lG~~~i~l~~l~-~~~~~~~w~~L 638 (1024)
.+|=.||.+.||+.+|. .......|||+
T Consensus 113 ~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 113 ETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 24558899999999964 44567889985
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00031 Score=76.56 Aligned_cols=106 Identities=23% Similarity=0.320 Sum_probs=88.0
Q ss_pred CeEEEEEEEEeeCCCCCCC-CCCCCcEEEEEEC--C---EEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEe-cC
Q 001703 535 GWVLTVALVEGVNLASSEM-TGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFD-FD 607 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d~-~g~~DPyv~v~~~--~---~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D-~d 607 (1024)
.|.+.|.|++|++|..+.. ...++|||+|++- + .+.+|+...+|++|.+-+...|. ..++...|.++||- +.
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~-~sp~~k~Lq~tv~gdyg 346 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFD-QSPPGKYLQGTVWGDYG 346 (405)
T ss_pred cCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhc-cCCCccEEEEEEecccc
Confidence 4689999999999988654 3368999999994 2 25689999999999888899988 66778899999994 45
Q ss_pred CCCCCCccceEEEEEcccccCCC-ccceEEEccccc
Q 001703 608 GPFDQATSLGHAEINFLKHTSTE-LADMWVSLEGKL 642 (1024)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~-~~~~w~~L~~~~ 642 (1024)
+ ..++.|+|.+.|.+.++.... ....||+|-+..
T Consensus 347 R-md~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 347 R-MDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred c-cchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 5 677899999999999998776 778899998743
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00036 Score=60.32 Aligned_cols=82 Identities=20% Similarity=0.389 Sum_probs=65.1
Q ss_pred EEEEEEeecCC-----CCCc--EEEE--EEC-CeEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEecCCCCCC
Q 001703 7 YVYVLQGQDLL-----AKDS--YVKV--QIG-KHKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDDSGL 74 (1024)
Q Consensus 7 ~V~V~~Ar~L~-----~~DP--yv~v--~l~-~~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~d~~~~f 74 (1024)
.++|++|++|. .-+| |++- .+. ....||++.+...||+|.|||.|.+. ....-.|.|.|+..-
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~----- 76 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQT----- 76 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccC-----
Confidence 57999999998 2234 5542 233 34589999999999999999999965 677888999999844
Q ss_pred CCCCCCeeEEEEEeCcccccc
Q 001703 75 FGSSGELMGRVRVPVSSIAAE 95 (1024)
Q Consensus 75 ~~~~d~~lG~~~i~L~~l~~~ 95 (1024)
.+...||.+.+.|.++...
T Consensus 77 --~RKe~iG~~sL~l~s~gee 95 (103)
T cd08684 77 --PRKRTIGECSLSLRTLSTQ 95 (103)
T ss_pred --CccceeeEEEeecccCCHH
Confidence 4788999999999888764
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0004 Score=75.74 Aligned_cols=101 Identities=17% Similarity=0.290 Sum_probs=83.9
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEe-cC
Q 001703 3 STRLYVYVLQGQDLL-------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQ-HN 69 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d-~d 69 (1024)
.+.|.|.|++|++|. .++|||+||+.. .+.+|+...+|++|.+-+...|+- .+....|.+.||- +.
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~-sp~~k~Lq~tv~gdyg 346 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQ-SPPGKYLQGTVWGDYG 346 (405)
T ss_pred cCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhcc-CCCccEEEEEEecccc
Confidence 568999999999999 689999999953 358999999999999999999987 5888899999985 44
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCC
Q 001703 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPK 111 (1024)
Q Consensus 70 ~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~ 111 (1024)
+ +-.+.|+|-+.+-+.+|... ..+...||+|-...
T Consensus 347 ---R--md~k~fmg~aqi~l~eL~ls--~~~~igwyKlfgss 381 (405)
T KOG2060|consen 347 ---R--MDHKSFMGVAQIMLDELNLS--SSPVIGWYKLFGSS 381 (405)
T ss_pred ---c--cchHHHhhHHHHHhhhhccc--cccceeeeeccCCc
Confidence 3 45677999999999999875 23677899998443
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0012 Score=79.38 Aligned_cols=87 Identities=20% Similarity=0.326 Sum_probs=72.7
Q ss_pred CcEEEEEEEEeecCCCCCcEEE-EEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCCCCe
Q 001703 3 STRLYVYVLQGQDLLAKDSYVK-VQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGEL 81 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~~~DPyv~-v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~d~~ 81 (1024)
.+.+.++|++|+ +...|||.. +++|.+.+||.+.++|+||+||+...|.|........++.|||.+ + .+.++.
T Consensus 53 ~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~s~n~l 126 (644)
T PLN02964 53 SGIALLTLVGAE-MKFKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETN---R--LSKNTL 126 (644)
T ss_pred cCeEEEEeehhh-hccCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecC---C--CCHHHh
Confidence 467889999987 446788655 677888999999999999999999999987444455699999999 5 579999
Q ss_pred eEEEEEeCcccccc
Q 001703 82 MGRVRVPVSSIAAE 95 (1024)
Q Consensus 82 lG~~~i~L~~l~~~ 95 (1024)
+|.+.++|.++...
T Consensus 127 v~~~e~~~t~f~~k 140 (644)
T PLN02964 127 VGYCELDLFDFVTQ 140 (644)
T ss_pred hhheeecHhhccHH
Confidence 99999999888764
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0015 Score=71.73 Aligned_cols=126 Identities=14% Similarity=0.154 Sum_probs=96.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeecCC-----------CCeEE
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEEP-----------PSVLD 600 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~~~-----------~~~L~ 600 (1024)
.|.+.|+++.+++.....--.|-|+++.+. .++.+|.+++.|..|.|+|.|.+.+...+ ..-++
T Consensus 368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k 447 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK 447 (523)
T ss_pred HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence 677888888888765432335788888773 45678889999999999999999975432 23599
Q ss_pred EEEEecCCCCCCCccceEEEEEcccccCCCccceEEEccccccccccceeEEEEEEeccCCch
Q 001703 601 VEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNGVE 663 (1024)
Q Consensus 601 v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~~~~~~~~ 663 (1024)
|+||.+..-+..|.++|.+.|-|..|...-.....++|.+. .+...|+|.+.+-+...-+..
T Consensus 448 feifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG-RK~vGGkLevKvRiR~Pi~~~ 509 (523)
T KOG3837|consen 448 FEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG-RKAVGGKLEVKVRIRQPIGDA 509 (523)
T ss_pred EEEeeccccccccceeceeeeeehhhhcccchhhceecccc-ccccCCeeEEEEEEecccchh
Confidence 99999987346788999999999998877777888898763 234578999999876554433
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0057 Score=70.88 Aligned_cols=126 Identities=15% Similarity=0.237 Sum_probs=88.0
Q ss_pred EEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecC
Q 001703 31 KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110 (1024)
Q Consensus 31 ~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~ 110 (1024)
..+|.++++.+||.|-+.|.+.+.....+.|++.++|.+.... .....+|+|++.+.+..+..... ...-+.++ +
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~-~l~~~dflg~~~c~l~~ivs~~~---~~~~l~~~-~ 116 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTP-DLSSADFLGTAECTLSQIVSSSG---LTGPLLLK-P 116 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccC-Ccchhcccceeeeehhhhhhhhh---hhhhhhcc-c
Confidence 3699999999999999999998778888999999999883211 23567899999999999886421 11112222 1
Q ss_pred CCCCCCCccccEEEEEEEEEecCCeeeEEEEEeeccCCCCCCCCCCCCCeEEEEecC
Q 001703 111 KTRKFTNKDCGKILLTISLNGKGHNLSSNRLLYLHSNVSSNESKELEDPCVLSHDVS 167 (1024)
Q Consensus 111 ~~~~~~~~~~G~I~lsl~~~~~~~~l~v~v~~~~~~~L~~~~~~g~sdp~vkv~l~~ 167 (1024)
. .....|.|.+.+.-... .-.+..+..++.+|...|..+.+|||..++-..
T Consensus 117 ~----~~~~~g~iti~aee~~~--~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~ 167 (529)
T KOG1327|consen 117 G----KNAGSGTITISAEEDES--DNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRV 167 (529)
T ss_pred C----ccCCcccEEEEeecccc--cCceeeeeeeeeecCcccccccCCcceEEEEec
Confidence 1 13345666555544333 333333344468999999999999999987664
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0038 Score=72.34 Aligned_cols=86 Identities=19% Similarity=0.317 Sum_probs=68.9
Q ss_pred EEEEeeCCCCCCCCCCCCcEEEEEEC------CEEEeeecccCCCCCeEeEEE----EEEeecCCCCeEEEEEEecCCCC
Q 001703 541 ALVEGVNLASSEMTGLSDPYVVFTCN------GKTRTSSVQLQTCDPQWHDIL----EFDAMEEPPSVLDVEVFDFDGPF 610 (1024)
Q Consensus 541 ~vi~a~~L~~~d~~g~~DPyv~v~~~------~~~~kT~~~~~t~nP~WnE~f----~f~~~~~~~~~L~v~V~D~d~~~ 610 (1024)
-.++|++|..+|.++++|||..+.-- ...++|.++++++||.|-+.. .+. ..++...+.+.+||+|. -
T Consensus 141 ~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~i~~~~l~-~~~~~~~~~i~~~d~~~-~ 218 (529)
T KOG1327|consen 141 FSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFSISLQSLC-SKDGNRPIQIECYDYDS-N 218 (529)
T ss_pred eeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccccccchhhhc-ccCCCCceEEEEeccCC-C
Confidence 34568999999999999999887652 235699999999999998532 111 23456789999999998 5
Q ss_pred CCCccceEEEEEcccccC
Q 001703 611 DQATSLGHAEINFLKHTS 628 (1024)
Q Consensus 611 ~~dd~lG~~~i~l~~l~~ 628 (1024)
++++++|++..++..+..
T Consensus 219 ~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 219 GKHDLIGKFQTTLSELQE 236 (529)
T ss_pred CCcCceeEecccHHHhcc
Confidence 888999999999998865
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.047 Score=54.49 Aligned_cols=89 Identities=17% Similarity=0.236 Sum_probs=63.3
Q ss_pred CcEEEEEEEEeecCC---CCCcEEEEEE--CCeE----EeeecccCCCCCeEeeEEEEEEe---cCCCCeEEEEEEecCC
Q 001703 3 STRLYVYVLQGQDLL---AKDSYVKVQI--GKHK----SKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQHND 70 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~---~~DPyv~v~l--~~~~----~rT~v~~~t~nP~WnE~f~f~v~---~~~~~~L~v~V~d~d~ 70 (1024)
+..++|+|++|.++. .+|-||.+.+ +++. ..|+.+.. .++.|||.+.|++. -+....|.|+||+...
T Consensus 7 ~~~~~v~i~~~~~~~~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~ 85 (158)
T cd08398 7 NSNLRIKILCATYVNVNDIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKG 85 (158)
T ss_pred CCCeEEEEEeeccCCCCCcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEec
Confidence 567999999999998 5677888866 4432 34544443 68999999999865 4667899999999772
Q ss_pred CCCCCCCCCCeeEEEEEeCcccc
Q 001703 71 DSGLFGSSGELMGRVRVPVSSIA 93 (1024)
Q Consensus 71 ~~~f~~~~d~~lG~~~i~L~~l~ 93 (1024)
... .......+|.+.++|-+..
T Consensus 86 ~~~-~k~~~~~iG~~ni~LFd~~ 107 (158)
T cd08398 86 RKG-AKEEHCPLAWGNINLFDYT 107 (158)
T ss_pred ccC-CCCceEEEEEEEEEEECCC
Confidence 100 0012357999999987744
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.064 Score=60.09 Aligned_cols=121 Identities=16% Similarity=0.284 Sum_probs=92.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeec-------CCCCeEEEEEEecCCCC
Q 001703 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAME-------EPPSVLDVEVFDFDGPF 610 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~-------~~~~~L~v~V~D~d~~~ 610 (1024)
+.|.|++|+|.+... .-.-.+..++++....|..+..+-.|.||.++.+++.. .....|++++|-.|..-
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 578999999999873 34567778999999999999999999999999998521 23458999999998313
Q ss_pred CCCccceEEEEEcccc---cCC--CccceEEEcccc--ccccccceeEEEEEEeccCC
Q 001703 611 DQATSLGHAEINFLKH---TST--ELADMWVSLEGK--LAQSAQSKVHLRIFLENNNG 661 (1024)
Q Consensus 611 ~~dd~lG~~~i~l~~l---~~~--~~~~~w~~L~~~--~~~~~~g~l~l~~~~~~~~~ 661 (1024)
+..+.+|.+.+||..+ ..+ .....||+|-+- .-+...-+|.|.+.++....
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 6778999999999988 444 466789999874 22223556777777665544
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.0063 Score=67.07 Aligned_cols=115 Identities=17% Similarity=0.327 Sum_probs=87.2
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEEC-----CeEEeeecccCCCCCeEeeEEEEEEecCC-----------CCeEE
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRVHNID-----------DEELV 62 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~-----~~~~rT~v~~~t~nP~WnE~f~f~v~~~~-----------~~~L~ 62 (1024)
.|.+.|+++++++ ..|-||++.+. .++.+|.++++|.+|.|+|.|.+.+.... ...+.
T Consensus 368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k 447 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK 447 (523)
T ss_pred HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence 3566777777777 35789998872 35689999999999999999999985211 25689
Q ss_pred EEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001703 63 VSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (1024)
Q Consensus 63 v~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (1024)
|+||+.. .| ..+|.++|.+.|.|.-|... ......++|.+.+ ...+|+|.+.+....
T Consensus 448 feifhkg---gf-~rSdkl~gt~nikle~Len~---cei~e~~~l~DGR-----K~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 448 FEIFHKG---GF-NRSDKLTGTGNIKLEILENM---CEICEYLPLKDGR-----KAVGGKLEVKVRIRQ 504 (523)
T ss_pred EEEeecc---cc-ccccceeceeeeeehhhhcc---cchhhceeccccc-----cccCCeeEEEEEEec
Confidence 9999999 54 67899999999999887753 2345567887433 357899988888754
|
|
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.051 Score=53.51 Aligned_cols=123 Identities=15% Similarity=0.201 Sum_probs=87.0
Q ss_pred eEEEEEEEEeeCCCCCCCC--CCCCcE--EEEEECCEEEeeecccCCCCCeEeEEEEEEeecCC-------------CCe
Q 001703 536 WVLTVALVEGVNLASSEMT--GLSDPY--VVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEP-------------PSV 598 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~--g~~DPy--v~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~-------------~~~ 598 (1024)
..|.|+|+.|+-...--.. |..+.- +-+.+++|.++|+.+.-+.+|.++|.|-|++.... ...
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p 88 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP 88 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence 3688888888854332110 333433 44555799999999999999999999999975432 346
Q ss_pred EEEEEEecCCCCCCCccceEEEEEcccccCCCcc--ceEEEcccccc--ccccceeEEEEEEecc
Q 001703 599 LDVEVFDFDGPFDQATSLGHAEINFLKHTSTELA--DMWVSLEGKLA--QSAQSKVHLRIFLENN 659 (1024)
Q Consensus 599 L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~--~~w~~L~~~~~--~~~~g~l~l~~~~~~~ 659 (1024)
|++.|.--|. .+...++|...+++..+...+.. ..-+.|.+... +...|-|.+++++-+.
T Consensus 89 ihivli~~d~-~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 89 IHIVLIRTDP-SGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred eEEEEEEecC-CCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 8888887776 56668999999999997766655 34445544322 2457999999987544
|
|
| >PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.38 Score=48.35 Aligned_cols=147 Identities=13% Similarity=0.124 Sum_probs=100.1
Q ss_pred cccccCCHHhHhhhccCChhHHHHHHHhCCcceeecccccCCCCceEEEEEEEEcc---c--ccCC-Cc--eecEEEEEe
Q 001703 857 NAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNR---H--VSIF-GG--EVTCTQQKS 928 (1024)
Q Consensus 857 ~~~~~~~~~~~f~lf~~~~~~~~~~~~~~~~~i~~~~W~~~~~~~~~R~~sy~~n~---~--~~~~-~~--~~~~~Q~~~ 928 (1024)
..+||++++++|.+|.+..|++..++..|..+..+..-..+.++ ....+.-.+.. | +..+ ++ .+..+++.
T Consensus 4 ~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g-~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e~w- 81 (159)
T PF10698_consen 4 SVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDG-VRVTVRQTVPADKLPSAARKFVGGDLRVTRTETW- 81 (159)
T ss_pred EEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCe-EEEEEEEecChhhCCHHHHHhcCCCeEEEEEEEE-
Confidence 35699999999999999999999999999867777766555444 32222222211 1 1111 12 33333433
Q ss_pred ecCCCCcEEEEEEEecCCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHHH
Q 001703 929 PLASGEGWIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIE 1008 (1024)
Q Consensus 929 ~~~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~~~c~l~v~~~V~f~Kst~~K~~Ie~~~~~g~~~~~~~~~~ 1008 (1024)
...++..+-.+...+++ |.-..+...+.++..+ .+|++.+...|.- |=+.+-++||+.+.+.+.+.+..--+
T Consensus 82 ~~~~~g~~~g~~~~~~~----G~P~~~~G~~~L~~~~---~gt~~~~~g~v~v-~VPlvGgkiE~~v~~~~~~~~~~e~~ 153 (159)
T PF10698_consen 82 TPLDDGRRTGTFTVSIP----GAPVSISGTMRLRPDG---GGTRLTVEGEVKV-KVPLVGGKIEKAVAENLRKLLEAEQE 153 (159)
T ss_pred ecCCCCeEEEEEEEEec----CceEEEEEEEEEecCC---CCEEEEEEEEEEE-EEccccHHHHHHHHHHHHHHHHHHHH
Confidence 22345556555444434 5556789999999855 7899988888875 55789999999999999988888777
Q ss_pred HHHHH
Q 001703 1009 LVERE 1013 (1024)
Q Consensus 1009 ~~~~~ 1013 (1024)
++.+.
T Consensus 154 ~~~~w 158 (159)
T PF10698_consen 154 FTAEW 158 (159)
T ss_pred HHHhh
Confidence 76654
|
The function is not known. |
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.11 Score=58.40 Aligned_cols=120 Identities=16% Similarity=0.360 Sum_probs=92.8
Q ss_pred EEEEEEEeecCC---CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEe-------cCCCCeEEEEEEecCCCCCCC
Q 001703 6 LYVYVLQGQDLL---AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVH-------NIDDEELVVSVFQHNDDSGLF 75 (1024)
Q Consensus 6 L~V~V~~Ar~L~---~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~-------~~~~~~L~v~V~d~d~~~~f~ 75 (1024)
+.|+|++|||.+ ...-.+..+++++...|..+..+-.|.||-++.+++. ......|++++|..|. .
T Consensus 2 ivl~i~egr~F~~~~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~----~ 77 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDG----S 77 (340)
T ss_pred EEEEEecccCCCCCCCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecC----C
Confidence 568999999999 3445777889999999999999999999999999975 2445789999999882 1
Q ss_pred CCCCCeeEEEEEeCccc---cccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001703 76 GSSGELMGRVRVPVSSI---AAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (1024)
Q Consensus 76 ~~~d~~lG~~~i~L~~l---~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (1024)
.+....||-+.++|..+ .. .+......||+|...++. -.+..-+|+|++..+..
T Consensus 78 ~~~re~iGyv~LdLRsa~~~~~-~~~~~~~~W~~LL~~~~~--y~~~KPEl~l~l~ie~~ 134 (340)
T PF12416_consen 78 TGKRESIGYVVLDLRSAVVPQE-KNQKQKPKWYKLLSSSSK--YKKHKPELLLSLSIEDD 134 (340)
T ss_pred CCcceeccEEEEEccccccccc-cccccCCCeeEccccccc--cccCCccEEEEEEEecc
Confidence 34678999999999998 32 223467899999844221 12356789998888765
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.066 Score=64.45 Aligned_cols=83 Identities=31% Similarity=0.520 Sum_probs=68.4
Q ss_pred cEEEEEEEEeecCC--CCCcEEEEEECC-------eEEeeecccC-CCCCeEee-EEEEE-EecCCCCeEEEEEEecCCC
Q 001703 4 TRLYVYVLQGQDLL--AKDSYVKVQIGK-------HKSKSRILKN-NSNPVWNE-EFVFR-VHNIDDEELVVSVFQHNDD 71 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~--~~DPyv~v~l~~-------~~~rT~v~~~-t~nP~WnE-~f~f~-v~~~~~~~L~v~V~d~d~~ 71 (1024)
.+|.|+||++.-|. ....||.|.+-+ ..+||++... +.||+|+| -|.|. |--+.-..|+|.||+.+
T Consensus 703 ~t~sV~VISgqFLSdrkvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg-- 780 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRKVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG-- 780 (1189)
T ss_pred eeEEEEEEeeeeccccccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeeccC--
Confidence 57899999999998 788999999832 3478888765 99999995 48998 43577788999999987
Q ss_pred CCCCCCCCCeeEEEEEeCcccccc
Q 001703 72 SGLFGSSGELMGRVRVPVSSIAAE 95 (1024)
Q Consensus 72 ~~f~~~~d~~lG~~~i~L~~l~~~ 95 (1024)
..|||+-.+|+..+..+
T Consensus 781 -------gK~ig~RIlpvd~l~~G 797 (1189)
T KOG1265|consen 781 -------GKFIGQRILPVDGLNAG 797 (1189)
T ss_pred -------CceeeeeccchhcccCc
Confidence 26999999999888763
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.019 Score=49.97 Aligned_cols=95 Identities=14% Similarity=0.226 Sum_probs=66.9
Q ss_pred EEEEEEeeCCCCCCCCCC-CCcEEE--EEECC-EEEeeecccCCCCCeEeEEEEEEee--cCCCCeEEEEEEecCCCCCC
Q 001703 539 TVALVEGVNLASSEMTGL-SDPYVV--FTCNG-KTRTSSVQLQTCDPQWHDILEFDAM--EEPPSVLDVEVFDFDGPFDQ 612 (1024)
Q Consensus 539 ~V~vi~a~~L~~~d~~g~-~DPyv~--v~~~~-~~~kT~~~~~t~nP~WnE~f~f~~~--~~~~~~L~v~V~D~d~~~~~ 612 (1024)
-|+|+.+++|.-....|- .--|++ +++.+ ..+||++.....||+++|+|.|.+. .-+.-.|.|.|+. -+ .+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~--~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QT--PR 78 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cC--Cc
Confidence 478899999875443332 223443 34444 3579999999999999999999973 2344589999998 32 56
Q ss_pred CccceEEEEEcccccCCCccceEEE
Q 001703 613 ATSLGHAEINFLKHTSTELADMWVS 637 (1024)
Q Consensus 613 dd~lG~~~i~l~~l~~~~~~~~w~~ 637 (1024)
.+.||.+.+.+.++..++ .+.|..
T Consensus 79 Ke~iG~~sL~l~s~geeE-~~HW~e 102 (103)
T cd08684 79 KRTIGECSLSLRTLSTQE-TDHWLE 102 (103)
T ss_pred cceeeEEEeecccCCHHH-hhhhhc
Confidence 689999999999865443 455654
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.035 Score=66.72 Aligned_cols=112 Identities=16% Similarity=0.226 Sum_probs=82.5
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-------CEEEeeecc-cCCCCCeEeE-EEEEEe-ecCCCCeEEEEEE
Q 001703 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-------GKTRTSSVQ-LQTCDPQWHD-ILEFDA-MEEPPSVLDVEVF 604 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-------~~~~kT~~~-~~t~nP~WnE-~f~f~~-~~~~~~~L~v~V~ 604 (1024)
.+.+.|+||+|.=|..++. ..||.|.+- .+.++|+++ .+++||+|+| .|.|.= .-+.-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 4689999999999988763 379999883 345788884 5799999995 688863 2334568999999
Q ss_pred ecCCCCCCCccceEEEEEcccccCCCccceEEEcccccccc-ccceeEEEEEEec
Q 001703 605 DFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIFLEN 658 (1024)
Q Consensus 605 D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~~~~ 658 (1024)
+... .+||+-.+|+..+..|..+ +.|....++. .-..|.+.+.+..
T Consensus 778 eEgg-----K~ig~RIlpvd~l~~GYrh---v~LRse~Nqpl~lp~Lfv~i~~kd 824 (1189)
T KOG1265|consen 778 EEGG-----KFIGQRILPVDGLNAGYRH---VCLRSESNQPLTLPALFVYIVLKD 824 (1189)
T ss_pred ccCC-----ceeeeeccchhcccCccee---EEecCCCCCccccceeEEEEEeec
Confidence 9775 6999999999999988754 4666544433 2345666665543
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.15 Score=51.02 Aligned_cols=101 Identities=17% Similarity=0.332 Sum_probs=68.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCEEE----eeecccCCCCCeEeEEEEEEeec---CCCCeEEEEEEecC
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTC--NGKTR----TSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDFD 607 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~--~~~~~----kT~~~~~t~nP~WnE~f~f~~~~---~~~~~L~v~V~D~d 607 (1024)
.++|+++.|.++...+ .+|-||.+.+ |++.. .|+.+.- .+|.|||.++|++.- +....|.|+||+..
T Consensus 9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 6789999999988754 4688888755 55433 3443333 679999999998621 33559999999976
Q ss_pred CCCC---CCccceEEEEEcccccCCCccceEEEccccccccccceeEEEEEE
Q 001703 608 GPFD---QATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFL 656 (1024)
Q Consensus 608 ~~~~---~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~ 656 (1024)
..-+ ....+|.+.++|-+-.. .| .+|...|.++.
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd~~~--------~L-------r~G~~~L~lW~ 121 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFDYTD--------TL-------VSGKMALNLWP 121 (158)
T ss_pred cccCCCCceEEEEEEEEEEECCCC--------hh-------hCCCEEEEEEc
Confidence 4101 12468999988876221 12 25777777774
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.14 Score=52.22 Aligned_cols=91 Identities=15% Similarity=0.236 Sum_probs=62.0
Q ss_pred CcEEEEEEEEeecCCC----CCcEEEEEE--CCeE----EeeecccCCCCCeEeeEEEEEEe---cCCCCeEEEEEEecC
Q 001703 3 STRLYVYVLQGQDLLA----KDSYVKVQI--GKHK----SKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQHN 69 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~~----~DPyv~v~l--~~~~----~rT~v~~~t~nP~WnE~f~f~v~---~~~~~~L~v~V~d~d 69 (1024)
...++|+|+.+.+|.. .+-||.+.+ |++. ..|+.+.-+..+.|||.+.|++. -+....|.|.||+..
T Consensus 7 ~~~f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 7 EEKFSITLHKISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CCCEEEEEEEeccCccCCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 4578999999999982 445666544 4432 46666655678999999999865 466789999999976
Q ss_pred CCCCC-----------CCCCCCeeEEEEEeCcccc
Q 001703 70 DDSGL-----------FGSSGELMGRVRVPVSSIA 93 (1024)
Q Consensus 70 ~~~~f-----------~~~~d~~lG~~~i~L~~l~ 93 (1024)
...+. ..+.+..||.+.++|-+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~ 121 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYK 121 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEccc
Confidence 21100 0012458888888876643
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >PF14470 bPH_3: Bacterial PH domain | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.19 Score=45.60 Aligned_cols=90 Identities=18% Similarity=0.179 Sum_probs=63.6
Q ss_pred CCCccccccceeeeeecc-cccccceeeeecEEEEEecc-CCCeEEEEEecccceeeEeccccccccCCCcEEEEEeccC
Q 001703 697 LPPEEFLIKDFTCYLKRK-MPLQGRLFLSARIVGFYANL-FGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGR 774 (1024)
Q Consensus 697 l~~~e~l~~~~~c~~~~~-~~~~G~lyis~~~~cF~s~~-~g~~~~~~i~~~di~~i~k~~~~~~~~~~~~i~i~~~~~~ 774 (1024)
|.++|.+.....|.+... -...|-+++|...+-|+..- ++......|||++|.+|+..++-+ + ..|.|.+
T Consensus 1 L~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~---~-~~i~i~~---- 72 (96)
T PF14470_consen 1 LKEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGIL---G-GKITIET---- 72 (96)
T ss_pred CcCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEcccc---c-cEEEEEE----
Confidence 456888888888876632 23559999999999999775 667888999999999999877322 1 2344432
Q ss_pred CcccCCCccccCCCCceEEEEEeecChhHHHHHHH
Q 001703 775 GLDARHGAKSQDEEGRLRFYFQSFVSFNDASRTIM 809 (1024)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~ 809 (1024)
+..++.|.++ ..+++-....
T Consensus 73 --------------~~~~~~i~~i-~k~~~~~~~~ 92 (96)
T PF14470_consen 73 --------------NGEKIKIDNI-QKGDVKEFYE 92 (96)
T ss_pred --------------CCEEEEEEEc-CHHHHHHHHH
Confidence 2248888887 6666555443
|
|
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.29 Score=48.30 Aligned_cols=121 Identities=18% Similarity=0.264 Sum_probs=81.2
Q ss_pred cEEEEEEEEeecCC--C----CC--c--EEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCC-------------CCe
Q 001703 4 TRLYVYVLQGQDLL--A----KD--S--YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNID-------------DEE 60 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~--~----~D--P--yv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~-------------~~~ 60 (1024)
..|++.|+.+|-.. . .+ . .+.+.+++++++|+.+..+.+|.|+|.|.|+++... ...
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p 88 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP 88 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence 45888999888655 1 12 2 334455799999999999999999999999987221 256
Q ss_pred EEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001703 61 LVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (1024)
Q Consensus 61 L~v~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (1024)
|.+.|.-.| . .+...++|.-.+....+...+. ...++.++-...+....-..|-|.+++.+.|.
T Consensus 89 ihivli~~d---~--~~~~~Lv~s~~ldWR~vL~s~~---~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 89 IHIVLIRTD---P--SGETTLVGSHFLDWRKVLCSGN---GSTSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred eEEEEEEec---C--CCceEeeeeceehHHHHhccCC---CccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 777787777 2 2345799998888888776543 22245544111111112367888888888764
|
|
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.31 Score=49.58 Aligned_cols=102 Identities=16% Similarity=0.193 Sum_probs=66.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCEEE----eeecccCCCCCeEeEEEEEEeec---CCCCeEEEEEEecC
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTC--NGKTR----TSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDFD 607 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~--~~~~~----kT~~~~~t~nP~WnE~f~f~~~~---~~~~~L~v~V~D~d 607 (1024)
.++|+|+.+.++... ....+-||.+.+ |++.. .|+.+.-+.+|.|||.++|++.- +....|.|+||+..
T Consensus 9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 689999999999862 234566766544 55543 55555545679999999998621 33458999999975
Q ss_pred CCCC----------------CCccceEEEEEcccccCCCccceEEEccccccccccceeEEEEEE
Q 001703 608 GPFD----------------QATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFL 656 (1024)
Q Consensus 608 ~~~~----------------~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~ 656 (1024)
. -. .+..||.+.++|-+... .-.+|...|.++.
T Consensus 87 ~-~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~---------------~Lr~G~~~L~lW~ 135 (173)
T cd08693 87 K-KAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKG---------------QLKTGDHTLYMWT 135 (173)
T ss_pred c-cccccccccccccccccCcceEEEEEeEEEEcccc---------------hhhcCCeEEEecC
Confidence 3 11 13567777777765221 1235777777764
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=93.99 E-value=1.3 Score=43.54 Aligned_cols=119 Identities=22% Similarity=0.343 Sum_probs=79.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEE---Eeeec-ccCCCCCeEeEEEEEEeec---C-----CCCeEEEEE
Q 001703 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKT---RTSSV-QLQTCDPQWHDILEFDAME---E-----PPSVLDVEV 603 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~---~kT~~-~~~t~nP~WnE~f~f~~~~---~-----~~~~L~v~V 603 (1024)
..+.|++.+..+++.. ..--||....++.. .+|.. ...+-.-.|||.|.+.+.- . ....+.|.|
T Consensus 7 f~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 7 FQFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 4678999999999872 23455556555443 34433 3345568999999998732 1 133789999
Q ss_pred EecCCCCCCCccceEEEEEcccccCC--CccceEEEccccccccccceeEEEEEEeccCC
Q 001703 604 FDFDGPFDQATSLGHAEINFLKHTST--ELADMWVSLEGKLAQSAQSKVHLRIFLENNNG 661 (1024)
Q Consensus 604 ~D~d~~~~~dd~lG~~~i~l~~l~~~--~~~~~w~~L~~~~~~~~~g~l~l~~~~~~~~~ 661 (1024)
+..+. -++...+|.+.|+|++.... .....-++|... ......|+|.+.+....+
T Consensus 83 ~~~~~-~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--~~~~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 83 FEVDG-SGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--KKSNATLSISISLSELRE 139 (143)
T ss_pred EEecC-CCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--CCCCcEEEEEEEEEECcc
Confidence 88753 13336899999999997664 455667788764 234567888887654443
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.45 Score=47.63 Aligned_cols=106 Identities=14% Similarity=0.253 Sum_probs=69.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCEE----EeeecccCCCCCeEeEEEEEEeec---CCCCeEEEEEEecC
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTC--NGKT----RTSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDFD 607 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~--~~~~----~kT~~~~~t~nP~WnE~f~f~~~~---~~~~~L~v~V~D~d 607 (1024)
.++|++....++...+ ....+-||.+.+ |++. ..|.......++.|||.++|++.- +....|.|+||+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 5678888888877622 234566666644 4442 244444434689999999998622 33558999999987
Q ss_pred CCCC--CCccceEEEEEcccccCCCccceEEEccccccccccceeEEEEEEecc
Q 001703 608 GPFD--QATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENN 659 (1024)
Q Consensus 608 ~~~~--~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~~~~ 659 (1024)
. -. .+..||.+.++|-+... .| .+|...|.++....
T Consensus 88 ~-~~~~~~~~iG~~~~~lFd~~~--------~L-------~~G~~~l~lW~~~~ 125 (156)
T cd08380 88 E-PGSKKEVPLGWVNVPLFDYKG--------KL-------RQGMITLNLWPGKK 125 (156)
T ss_pred c-CCCCcceEEEEEeEEeEcccC--------cE-------ecCCEEEeccCCcc
Confidence 6 23 46789999999886321 12 25777777765433
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.71 Score=40.84 Aligned_cols=84 Identities=11% Similarity=0.154 Sum_probs=62.3
Q ss_pred CCCcEEEEEECCE-EEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCccceEEEEEcccccCCCccce
Q 001703 556 LSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADM 634 (1024)
Q Consensus 556 ~~DPyv~v~~~~~-~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~ 634 (1024)
-++-.+++.++++ ...|..... .+..||+.|.+++ +...+|+|.||-.|- ..+.|-..+-|.+. .+..
T Consensus 8 ~~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~L--dRsRELEI~VywrD~----RslCav~~lrLEd~----~~~~ 76 (98)
T cd08687 8 CSEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLEL--ERSRELEIAVYWRDW----RSLCAVKFLKLEDE----RHEV 76 (98)
T ss_pred ccceEEEEEEcCeEEeecccccc-ccccccceeEEEe--ecccEEEEEEEEecc----hhhhhheeeEhhhh----cccc
Confidence 3688899999875 456665443 5788999999984 446799999998885 25778888888873 3345
Q ss_pred EEEccccccccccceeEEEEEE
Q 001703 635 WVSLEGKLAQSAQSKVHLRIFL 656 (1024)
Q Consensus 635 w~~L~~~~~~~~~g~l~l~~~~ 656 (1024)
-.+|++ +|.+...+++
T Consensus 77 ~~~lep------qg~l~~ev~f 92 (98)
T cd08687 77 QLDMEP------QLCLVAELTF 92 (98)
T ss_pred eecccc------ccEEEEEEEe
Confidence 567765 7888888776
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.53 Score=47.17 Aligned_cols=91 Identities=19% Similarity=0.352 Sum_probs=61.7
Q ss_pred CCCCcEEEEEE--CCEEE----eeecccCCCCCeEeEEEEEEeec---CCCCeEEEEEEecCCCCCCCccceEEEEEccc
Q 001703 555 GLSDPYVVFTC--NGKTR----TSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDFDGPFDQATSLGHAEINFLK 625 (1024)
Q Consensus 555 g~~DPyv~v~~--~~~~~----kT~~~~~t~nP~WnE~f~f~~~~---~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~ 625 (1024)
..+|-||.+.+ +++.. .|+.+.-+..+.|||...|++.- +....|.|+|||.+. -++...+|.+.++|-+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~-~~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSG-TGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecC-CCCceEEEEEEEeeEC
Confidence 34677777755 44433 55555556678999999999732 335699999999886 3567789999999886
Q ss_pred ccCCCccceEEEccccccccccceeEEEEEEeccCC
Q 001703 626 HTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNG 661 (1024)
Q Consensus 626 l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~~~~~~ 661 (1024)
-. + .| .+|...|.++.....+
T Consensus 107 ~~-g-------~L-------r~G~~~l~lw~~~~~d 127 (159)
T cd08397 107 KD-G-------TL-------RRGRQKLRVWPDVEAD 127 (159)
T ss_pred CC-C-------cE-------ecCCEEEEEEeCCCCC
Confidence 32 1 12 2677777777554443
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.4 Score=48.04 Aligned_cols=88 Identities=18% Similarity=0.320 Sum_probs=61.0
Q ss_pred CcEEEEEEEEeecCC-----CCCcEEEEEE--CCeE----EeeecccCCCCCeEeeEEEEEEe---cCCCCeEEEEEEec
Q 001703 3 STRLYVYVLQGQDLL-----AKDSYVKVQI--GKHK----SKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQH 68 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~-----~~DPyv~v~l--~~~~----~rT~v~~~t~nP~WnE~f~f~v~---~~~~~~L~v~V~d~ 68 (1024)
+..++|++..+.++. ..+-||.+.+ +++. ..|.......++.|||...|.+. -+....|.++||+.
T Consensus 7 ~~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 7 NFNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 456888888888875 3455666655 4432 34444443478999999999965 46678999999998
Q ss_pred CCCCCCCCCCCCeeEEEEEeCcccc
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSIA 93 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~L~~l~ 93 (1024)
+... ...+..||.+.++|-+..
T Consensus 87 ~~~~---~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 87 SEPG---SKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred ecCC---CCcceEEEEEeEEeEccc
Confidence 7210 014579999999987754
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=92.77 E-value=1.1 Score=39.67 Aligned_cols=83 Identities=11% Similarity=0.210 Sum_probs=60.7
Q ss_pred CCcEEEEEECC-eEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCC
Q 001703 19 KDSYVKVQIGK-HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDN 97 (1024)
Q Consensus 19 ~DPyv~v~l~~-~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~ 97 (1024)
++-.+.+.+.+ ...+|.-... .+..|++.|.+++ ...+.|.|.||-.| -....|-..+.|.+...
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~L--dRsRELEI~VywrD--------~RslCav~~lrLEd~~~--- 74 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLEL--ERSRELEIAVYWRD--------WRSLCAVKFLKLEDERH--- 74 (98)
T ss_pred cceEEEEEEcCeEEeecccccc-ccccccceeEEEe--ecccEEEEEEEEec--------chhhhhheeeEhhhhcc---
Confidence 56678888876 4577766654 5789999999999 68899999999988 23566777777877322
Q ss_pred CCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 98 HMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 98 ~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
..-.+|+ +.|.+...+.|
T Consensus 75 ----~~~~~le----------pqg~l~~ev~f 92 (98)
T cd08687 75 ----EVQLDME----------PQLCLVAELTF 92 (98)
T ss_pred ----cceeccc----------cccEEEEEEEe
Confidence 1123443 67888888887
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.47 Score=47.54 Aligned_cols=70 Identities=11% Similarity=0.216 Sum_probs=53.2
Q ss_pred CCCcEEEEEE--CCeE----EeeecccCCCCCeEeeEEEEEEe---cCCCCeEEEEEEecCCCCCCCCCCCCeeEEEEEe
Q 001703 18 AKDSYVKVQI--GKHK----SKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVP 88 (1024)
Q Consensus 18 ~~DPyv~v~l--~~~~----~rT~v~~~t~nP~WnE~f~f~v~---~~~~~~L~v~V~d~d~~~~f~~~~d~~lG~~~i~ 88 (1024)
.+|-||.+++ ++.. .+|+.+.-+..+.|||...|.+. -+....|.|+||+.+ ..+....+|.+.++
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~-----~~~~~~~vg~~~~~ 103 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVS-----GTGKAVPFGGTTLS 103 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEec-----CCCCceEEEEEEEe
Confidence 5778888877 3332 46666666778999999999976 466789999999988 23456799999999
Q ss_pred Cccc
Q 001703 89 VSSI 92 (1024)
Q Consensus 89 L~~l 92 (1024)
|-+-
T Consensus 104 lFd~ 107 (159)
T cd08397 104 LFNK 107 (159)
T ss_pred eECC
Confidence 8664
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.74 Score=46.84 Aligned_cols=89 Identities=15% Similarity=0.188 Sum_probs=62.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCEEE----eeeccc----CCCCCeEeEEEEEEeec---CCCCeEEEE
Q 001703 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTC--NGKTR----TSSVQL----QTCDPQWHDILEFDAME---EPPSVLDVE 602 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~--~~~~~----kT~~~~----~t~nP~WnE~f~f~~~~---~~~~~L~v~ 602 (1024)
..+.|+|..+.+++........|-||.+.+ |++.. .|+... -...+.|||.++|++.- +....|.|+
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 368999999999998765456788888755 55543 443211 12357899999998721 234589999
Q ss_pred EEecCCCCC---------CCccceEEEEEccc
Q 001703 603 VFDFDGPFD---------QATSLGHAEINFLK 625 (1024)
Q Consensus 603 V~D~d~~~~---------~dd~lG~~~i~l~~ 625 (1024)
||+... -. .+..||.+.++|-+
T Consensus 88 l~~~~~-~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 88 LYGTTS-SPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEec-CCccccccccccceEEEEEeEeeEc
Confidence 999765 23 34688888888876
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.85 Score=46.40 Aligned_cols=92 Identities=20% Similarity=0.272 Sum_probs=62.4
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEE--CCeE----Eeeeccc--C--CCCCeEeeEEEEEEe---cCCCCeEE
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQI--GKHK----SKSRILK--N--NSNPVWNEEFVFRVH---NIDDEELV 62 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l--~~~~----~rT~v~~--~--t~nP~WnE~f~f~v~---~~~~~~L~ 62 (1024)
.+..+.|+|..+.+++ ..|-||.+.+ |++. ..|+... + ...+.|||.+.|++. -+....|.
T Consensus 6 v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~ 85 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV 85 (171)
T ss_pred ccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence 4567899999999999 3678888866 4432 3444221 1 336789999999965 46678999
Q ss_pred EEEEecCCCCCCC----CCCCCeeEEEEEeCcccc
Q 001703 63 VSVFQHNDDSGLF----GSSGELMGRVRVPVSSIA 93 (1024)
Q Consensus 63 v~V~d~d~~~~f~----~~~d~~lG~~~i~L~~l~ 93 (1024)
|+||+......-. ...+..||.+.++|-+..
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~ 120 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFR 120 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEcch
Confidence 9999977211000 003568999999886643
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.11 Score=48.23 Aligned_cols=66 Identities=17% Similarity=0.239 Sum_probs=45.0
Q ss_pred cccceeeeeec-ccccccceeeeecEEEEEec---------------cCCCeEEEEEecccceeeEeccccccccCCCcE
Q 001703 703 LIKDFTCYLKR-KMPLQGRLFLSARIVGFYAN---------------LFGNKTKFFFLWEDIEDIQILSPSLATVGSPSL 766 (1024)
Q Consensus 703 l~~~~~c~~~~-~~~~~G~lyis~~~~cF~s~---------------~~g~~~~~~i~~~di~~i~k~~~~~~~~~~~~i 766 (1024)
++-.+.|.+-. .....|.|.++.+++.|..+ .-.......+|++||..|.+..--+ -.-||
T Consensus 2 i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyll---r~~Al 78 (106)
T PF14844_consen 2 ILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLL---RDTAL 78 (106)
T ss_dssp -SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETT---EEEEE
T ss_pred EEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcC---cceEE
Confidence 34567887654 44578999999999999977 2233555789999999999877221 22368
Q ss_pred EEEEe
Q 001703 767 VIILW 771 (1024)
Q Consensus 767 ~i~~~ 771 (1024)
+|++.
T Consensus 79 EiF~~ 83 (106)
T PF14844_consen 79 EIFFS 83 (106)
T ss_dssp EEEET
T ss_pred EEEEc
Confidence 88875
|
|
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.11 E-value=0.84 Score=49.05 Aligned_cols=115 Identities=14% Similarity=0.097 Sum_probs=75.8
Q ss_pred CCCeEEEEEEEEeeCCCCCCC--CCCCCcEEEEEECCEE-EeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCC
Q 001703 533 GDGWVLTVALVEGVNLASSEM--TGLSDPYVVFTCNGKT-RTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGP 609 (1024)
Q Consensus 533 ~~~~~L~V~vi~a~~L~~~d~--~g~~DPyv~v~~~~~~-~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~ 609 (1024)
+-.|+|.+++++|++|.-... +-+-+-||++.++.+. -+|.+.....-=.|.|.|..++.. ...+.+-||.|+..
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvySW~pq 125 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYSWPPQ 125 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc--ceeeeEEEeecCch
Confidence 456899999999999975433 4457899999988653 466666666666789999988543 46889999999973
Q ss_pred CCCCccceEEEEEcccccCCC-ccceEEEccccccccccceeEEEEEE
Q 001703 610 FDQATSLGHAEINFLKHTSTE-LADMWVSLEGKLAQSAQSKVHLRIFL 656 (1024)
Q Consensus 610 ~~~dd~lG~~~i~l~~l~~~~-~~~~w~~L~~~~~~~~~g~l~l~~~~ 656 (1024)
.++.+.-..-|.+..+.... .+..-..|++ .|.+.+++-+
T Consensus 126 -~RHKLC~~g~l~~~~v~rqspd~~~Al~leP------rgq~~~r~~~ 166 (442)
T KOG1452|consen 126 -RRHKLCHLGLLEAFVVDRQSPDRVVALYLEP------RGQPPLRLPL 166 (442)
T ss_pred -hhccccccchhhhhhhhhcCCcceeeeeccc------CCCCceeccc
Confidence 55555444444444433322 2223344444 5667776654
|
|
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=88.85 E-value=3.5 Score=40.46 Aligned_cols=75 Identities=16% Similarity=0.298 Sum_probs=48.7
Q ss_pred eeecccCC-CCCeEeEEEEEEee---cCCCCeEEEEEEecCCCCCCC----ccceEEEEEcccccCCCccceEEEccccc
Q 001703 571 TSSVQLQT-CDPQWHDILEFDAM---EEPPSVLDVEVFDFDGPFDQA----TSLGHAEINFLKHTSTELADMWVSLEGKL 642 (1024)
Q Consensus 571 kT~~~~~t-~nP~WnE~f~f~~~---~~~~~~L~v~V~D~d~~~~~d----d~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 642 (1024)
.|+...-+ .+|.|||.++|++. -+....|.|+||+.+. -... ..||.+.++|-+...
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~-~~~~~~~~~~lgw~n~~lFd~~~-------------- 87 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDS-KKKSKKKKVPLGWVNLPLFDYRG-------------- 87 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEEC-STTT--EEEEEEEEEEESB-TTS--------------
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecC-CCccccceeEEEEEEEEeECCCC--------------
Confidence 55555555 89999999999962 2345699999999886 3444 589999999887422
Q ss_pred cccccceeEEEEEEeccCC
Q 001703 643 AQSAQSKVHLRIFLENNNG 661 (1024)
Q Consensus 643 ~~~~~g~l~l~~~~~~~~~ 661 (1024)
.-.+|...|.++.....+
T Consensus 88 -~L~~G~~~L~lW~~~~~~ 105 (142)
T PF00792_consen 88 -QLRQGPQKLSLWPDEEPD 105 (142)
T ss_dssp -BBEEEEEEEE-EET-TTS
T ss_pred -cccCCCEEEEEEcCCCCc
Confidence 122677777776544443
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=88.39 E-value=3.6 Score=41.90 Aligned_cols=70 Identities=14% Similarity=0.113 Sum_probs=43.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCEEE---eeecccCCCCCeEeEEEEEEee-c--CCCCeEEEEEEecC
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTC--NGKTR---TSSVQLQTCDPQWHDILEFDAM-E--EPPSVLDVEVFDFD 607 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~--~~~~~---kT~~~~~t~nP~WnE~f~f~~~-~--~~~~~L~v~V~D~d 607 (1024)
.++|+|+.+.++.. +.....--||.+.+ |++.. +|+...-+.+|.|||.++|++. . +....|.|+||+..
T Consensus 11 ~friki~~~~~~~~-~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIPVL-PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeecccCc-CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 56788888864332 21222234444422 44432 5666666778999999999872 2 33559999999964
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.17 E-value=0.87 Score=48.93 Aligned_cols=109 Identities=17% Similarity=0.270 Sum_probs=73.5
Q ss_pred CCcEEEEEEEEeecCC--------CCCcEEEEEECCe-EEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCC
Q 001703 2 VSTRLYVYVLQGQDLL--------AKDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDS 72 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~--------~~DPyv~v~l~~~-~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~ 72 (1024)
..+.|.++++.+|+|. ..+-||.+....+ +.||.+.....-=.|.|+|..++ ..-..+.+-||.++++.
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dv--v~~~vl~~lvySW~pq~ 126 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDV--VNIEVLHYLVYSWPPQR 126 (442)
T ss_pred ccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeec--ccceeeeEEEeecCchh
Confidence 3688999999999998 4678999988654 47777776666778999999887 46677888999998432
Q ss_pred CCCCCCCC--eeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001703 73 GLFGSSGE--LMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (1024)
Q Consensus 73 ~f~~~~d~--~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (1024)
++. ..| .+.+..+... ....-+-|. ..++|++.+.+.+..
T Consensus 127 -----RHKLC~~g--~l~~~~v~rq----spd~~~Al~--------lePrgq~~~r~~~~D 168 (442)
T KOG1452|consen 127 -----RHKLCHLG--LLEAFVVDRQ----SPDRVVALY--------LEPRGQPPLRLPLAD 168 (442)
T ss_pred -----hccccccc--hhhhhhhhhc----CCcceeeee--------cccCCCCceecccCC
Confidence 344 344 3333333332 112223333 346788888877754
|
|
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=88.07 E-value=2.7 Score=42.83 Aligned_cols=67 Identities=15% Similarity=0.253 Sum_probs=47.7
Q ss_pred CcEEEEEEEEeecCC---CCC--cEEEEEE--CCeE---EeeecccCCCCCeEeeEEEEEEe---cCCCCeEEEEEEecC
Q 001703 3 STRLYVYVLQGQDLL---AKD--SYVKVQI--GKHK---SKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQHN 69 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~---~~D--Pyv~v~l--~~~~---~rT~v~~~t~nP~WnE~f~f~v~---~~~~~~L~v~V~d~d 69 (1024)
+..++|+|+.+.++. ..+ -||++.+ |+.. .+|+...-+.+|.|||.+.|++. -+....|.|+||+..
T Consensus 9 ~~~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 9 DRKFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CCCEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 457899999987553 223 3555433 4432 46666666788999999999965 466789999999975
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG) | Back alignment and domain information |
|---|
Probab=87.78 E-value=27 Score=33.57 Aligned_cols=137 Identities=11% Similarity=0.076 Sum_probs=75.0
Q ss_pred ccccCCHHhHhhhccCChhHHHHHHHhCCcceeecccccCCCCceEEEEEEEEcccccCCCceecEEEEEeecCCCCcEE
Q 001703 858 AELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGWI 937 (1024)
Q Consensus 858 ~~~~~~~~~~f~lf~~~~~~~~~~~~~~~~~i~~~~W~~~~~~~~~R~~sy~~n~~~~~~~~~~~~~Q~~~~~~~~~~~v 937 (1024)
..+++|++++|+++.|.+-+.+++-... ++. +. +++...=.+.+. +++.+...+..=......+...++
T Consensus 7 ~~i~a~~e~v~~~l~D~~~~~~w~p~~~--~~~---~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 75 (144)
T cd05018 7 FRIPAPPEEVWAALNDPEVLARCIPGCE--SLE---KI--GPNEYEATVKLK----VGPVKGTFKGKVELSDLDPPESYT 75 (144)
T ss_pred EEecCCHHHHHHHhcCHHHHHhhccchh--hcc---cc--CCCeEEEEEEEE----EccEEEEEEEEEEEEecCCCcEEE
Confidence 4689999999999988776655553322 111 11 112111112222 233322222111122222334455
Q ss_pred EEEEEecCCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHHHHHHHHH
Q 001703 938 VNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREI 1014 (1024)
Q Consensus 938 v~~~~~~~dVPygd~F~v~~r~~i~~~~~~~~~c~l~v~~~V~f~Kst~~K~~Ie~~~~~g~~~~~~~~~~~~~~~i 1014 (1024)
+.-... +-+..+.....|.|+..+ ++|+|.....+++.. .++.+...-.....++....+++-+++.+
T Consensus 76 ~~~~~~----~~~~~~~~~~~~~l~~~~---~gT~v~~~~~~~~~g--~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 76 ITGEGK----GGAGFVKGTARVTLEPDG---GGTRLTYTADAQVGG--KLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred EEEEEc----CCCceEEEEEEEEEEecC---CcEEEEEEEEEEEcc--ChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 553222 225567899999999874 679999999888754 34555555555555566666666666554
|
CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=87.21 E-value=3 Score=40.97 Aligned_cols=56 Identities=16% Similarity=0.345 Sum_probs=41.1
Q ss_pred eeecccCC-CCCeEeeEEEEEEe---cCCCCeEEEEEEecCCCCCCCCCCC----CeeEEEEEeCcccc
Q 001703 33 KSRILKNN-SNPVWNEEFVFRVH---NIDDEELVVSVFQHNDDSGLFGSSG----ELMGRVRVPVSSIA 93 (1024)
Q Consensus 33 rT~v~~~t-~nP~WnE~f~f~v~---~~~~~~L~v~V~d~d~~~~f~~~~d----~~lG~~~i~L~~l~ 93 (1024)
.|....-+ .+|.|||.+.|.+. -+....|.|+||..+. .... ..||.+.++|-+..
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~-----~~~~~~~~~~lgw~n~~lFd~~ 86 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDS-----KKKSKKKKVPLGWVNLPLFDYR 86 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEEC-----STTT--EEEEEEEEEEESB-TT
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecC-----CCccccceeEEEEEEEEeECCC
Confidence 56666655 79999999999976 4677899999999882 2233 69999999987664
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=86.53 E-value=15 Score=35.79 Aligned_cols=116 Identities=22% Similarity=0.361 Sum_probs=74.4
Q ss_pred EEEEEEEEeecCCCCCcEEEEEE--CCe---EEeeeccc-CCCCCeEeeEEEEEEe---c-----CCCCeEEEEEEecCC
Q 001703 5 RLYVYVLQGQDLLAKDSYVKVQI--GKH---KSKSRILK-NNSNPVWNEEFVFRVH---N-----IDDEELVVSVFQHND 70 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~~~DPyv~v~l--~~~---~~rT~v~~-~t~nP~WnE~f~f~v~---~-----~~~~~L~v~V~d~d~ 70 (1024)
.+.++|.+..+++..+..+.|.+ +.. ...|.... .+..-.|||+|.+.+. + .....+.|.|+...+
T Consensus 8 ~~~l~i~~l~~~p~~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~ 87 (143)
T PF10358_consen 8 QFDLTIHELENLPSSNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDG 87 (143)
T ss_pred EEEEEEEEeECcCCCCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecC
Confidence 57889999999985555555555 333 23343332 3556789999999865 1 223568899988751
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001703 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (1024)
Q Consensus 71 ~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (1024)
.++...+|.+.|+|+++..... .....-++|... ......|.|++.+...
T Consensus 88 -----~~~k~~lG~~~inLaey~~~~~-~~~~~~~~l~~~------~~~~a~L~isi~~~~~ 137 (143)
T PF10358_consen 88 -----SGKKKVLGKVSINLAEYANEDE-EPITVRLLLKKC------KKSNATLSISISLSEL 137 (143)
T ss_pred -----CCccceEEEEEEEHHHhhCcCC-CcEEEEEeCccC------CCCCcEEEEEEEEEEC
Confidence 1233699999999999887421 123334555521 2356778888888654
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria | Back alignment and domain information |
|---|
Probab=84.33 E-value=47 Score=33.20 Aligned_cols=148 Identities=16% Similarity=0.213 Sum_probs=94.2
Q ss_pred eeEEecChhhhcccccCCCchhHHHHHHHhCccceeeCCCccCCCCCCeeEEEEEEEeccCc-------cc-eeeEEEEE
Q 001703 256 DQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKAATK-------LV-KAVKATEQ 327 (1024)
Q Consensus 256 d~~~~~~~~~l~~llf~~~s~f~~~~~~~~~~~~~~~~pw~~~~~~~~~~~R~~~y~~~~~~-------~~-k~~~~~e~ 327 (1024)
...|+++++++++++.. ..|++..+................. ++....+.-..|... ++ ..+..+++
T Consensus 4 ~~~~~~~~~~v~~~~~d--~~y~~~r~~~~g~~~~~~~~~~~~~---~g~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~ 78 (159)
T PF10698_consen 4 SVEYPAPVERVWAAFTD--EDYWEARCAALGADNAEVESFEVDG---DGVRVTVRQTVPADKLPSAARKFVGGDLRVTRT 78 (159)
T ss_pred EEEcCCCHHHHHHHHcC--HHHHHHHHHHcCCCCceEEEEEEcC---CeEEEEEEEecChhhCCHHHHHhcCCCeEEEEE
Confidence 35799999999999975 5788887766555333344332222 233333333344322 22 34666777
Q ss_pred EEEEeeCCCeEEEEEeeeCCCCCCCCeEEEEEEEEeecCCCCCCCCCceeEEEEEEEEEeeeeceecccccchHhhHHHH
Q 001703 328 QTYLKANGQEFAILVTVSTPDVPYGNTFNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKES 407 (1024)
Q Consensus 328 ~~~~~~~~~~~~v~~~~~tpdvp~g~~F~v~~~y~i~~~p~~~~~~~~~~l~i~~~i~~~~s~~~k~~iek~~~~g~~~~ 407 (1024)
++.-..++..+....+...+++| ..+.-.+.+.+ ....|++.+...++-+- .++-|.||+..-..+...
T Consensus 79 e~w~~~~~g~~~g~~~~~~~G~P----~~~~G~~~L~~------~~~gt~~~~~g~v~v~V-PlvGgkiE~~v~~~~~~~ 147 (159)
T PF10698_consen 79 ETWTPLDDGRRTGTFTVSIPGAP----VSISGTMRLRP------DGGGTRLTVEGEVKVKV-PLVGGKIEKAVAENLRKL 147 (159)
T ss_pred EEEecCCCCeEEEEEEEEecCce----EEEEEEEEEec------CCCCEEEEEEEEEEEEE-ccccHHHHHHHHHHHHHH
Confidence 77744345556555566666665 56677777773 45678777777665443 368899999999999888
Q ss_pred HHHHHHHHHhhc
Q 001703 408 FEQFANLLAQNL 419 (1024)
Q Consensus 408 ~~~~~~~l~~~~ 419 (1024)
++.-.++..+|+
T Consensus 148 ~~~e~~~~~~wl 159 (159)
T PF10698_consen 148 LEAEQEFTAEWL 159 (159)
T ss_pred HHHHHHHHHhhC
Confidence 887777766653
|
The function is not known. |
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=83.40 E-value=5 Score=36.82 Aligned_cols=65 Identities=17% Similarity=0.311 Sum_probs=46.8
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEE--CCeE----EeeecccCCCCCeEeeEEEEEEe---cCCCCeEEEEEEecC
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQI--GKHK----SKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQHN 69 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l--~~~~----~rT~v~~~t~nP~WnE~f~f~v~---~~~~~~L~v~V~d~d 69 (1024)
.+.+.+..+.++. .++-||.+.+ |+.. ..|+.+.-...+.|||...|++. -+....|.++||+..
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 12 NLVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred ceEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 3667777777776 2377888866 4432 35665555667999999999865 466789999999866
|
Outlier of C2 family. |
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=82.68 E-value=6.5 Score=36.07 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=45.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCEEE----eeecccCCCCCeEeEEEEEEee---cCCCCeEEEEEEecCC
Q 001703 538 LTVALVEGVNLASSEMTGLSDPYVVFTC--NGKTR----TSSVQLQTCDPQWHDILEFDAM---EEPPSVLDVEVFDFDG 608 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g~~DPyv~v~~--~~~~~----kT~~~~~t~nP~WnE~f~f~~~---~~~~~~L~v~V~D~d~ 608 (1024)
+.+.+....+.........+|-||.+.+ |++.. .|+.+.-...+.|||..+|++. -+....|.|+||+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 4566666666655433223578888755 55533 4554554566999999999862 1335589999998653
|
Outlier of C2 family. |
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=82.25 E-value=6.2 Score=40.64 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=33.8
Q ss_pred EEEeeecccCCCCCeEeEEEEEEeecCC--CCeEEEEEEecCCCCCCC--ccceEEEEEccc
Q 001703 568 KTRTSSVQLQTCDPQWHDILEFDAMEEP--PSVLDVEVFDFDGPFDQA--TSLGHAEINFLK 625 (1024)
Q Consensus 568 ~~~kT~~~~~t~nP~WnE~f~f~~~~~~--~~~L~v~V~D~d~~~~~d--d~lG~~~i~l~~ 625 (1024)
..+.|.+..++.+|.|+|+|.+.+..+. ...|.|++++....-+++ ..+|-+.++|-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 3467888889999999999999975443 458999999976411111 578888888876
|
|
| >cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family | Back alignment and domain information |
|---|
Probab=81.96 E-value=42 Score=34.56 Aligned_cols=142 Identities=8% Similarity=-0.017 Sum_probs=75.8
Q ss_pred cccccCCHHhHhhhccCChhHHHHHHHhCCcceeecccccCCCCceEEEEEEEE-cccccCCCc-eecEEEEEeecCCCC
Q 001703 857 NAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRF-NRHVSIFGG-EVTCTQQKSPLASGE 934 (1024)
Q Consensus 857 ~~~~~~~~~~~f~lf~~~~~~~~~~~~~~~~~i~~~~W~~~~~~~~~R~~sy~~-n~~~~~~~~-~~~~~Q~~~~~~~~~ 934 (1024)
..+++++++++++++.+.+...++..... +..+-. ....+ ..+.|.. ..| .|... ..+-........++.
T Consensus 46 ~~~i~~s~e~v~~vi~d~e~~~~w~~~~~--~~~vie--~~~~~---~~i~~~~~~~p-~pvs~Rdfv~~~~~~~~~~~~ 117 (195)
T cd08876 46 VAEVDASIEAFLALLRDTESYPQWMPNCK--ESRVLK--RTDDN---ERSVYTVIDLP-WPVKDRDMVLRSTTEQDADDG 117 (195)
T ss_pred EEEEeCCHHHHHHHHhhhHhHHHHHhhcc--eEEEee--cCCCC---cEEEEEEEecc-cccCCceEEEEEEEEEcCCCC
Confidence 34588999999998877666666655432 222211 11111 2334432 222 11111 222222222222234
Q ss_pred cEEEEEEEecCCCCCCC----ceEEEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHHHHH
Q 001703 935 GWIVNEVMSLHDVPFDD----HFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELV 1010 (1024)
Q Consensus 935 ~~vv~~~~~~~dVPygd----~F~v~~r~~i~~~~~~~~~c~l~v~~~V~f~Kst~~K~~Ie~~~~~g~~~~~~~~~~~~ 1010 (1024)
.+++......+++|-.. .+.....|.|++.+ +++|+|.....+++ |+.+-+.+|...+..... .+++.+
T Consensus 118 ~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~--~~~t~vt~~~~~dp-~g~iP~~lv~~~~~~~~~----~~l~~l 190 (195)
T cd08876 118 SVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLG--NGKTRVTYQAYADP-GGSIPGWLANAFAKDAPY----NTLENL 190 (195)
T ss_pred EEEEEeecCCccCCCCCCeEEceeceeeEEEEECC--CCeEEEEEEEEeCC-CCCCCHHHHHHHHHHHHH----HHHHHH
Confidence 45555333323356432 25666789999987 57899999999999 455566666666554333 444444
Q ss_pred HHH
Q 001703 1011 ERE 1013 (1024)
Q Consensus 1011 ~~~ 1013 (1024)
++.
T Consensus 191 ~~~ 193 (195)
T cd08876 191 RKQ 193 (195)
T ss_pred HHh
Confidence 444
|
Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a |
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=80.67 E-value=5.1 Score=41.28 Aligned_cols=58 Identities=16% Similarity=0.298 Sum_probs=34.7
Q ss_pred EeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEecCCCCCCCCCCCCeeEEEEEeCcc
Q 001703 32 SKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSS 91 (1024)
Q Consensus 32 ~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~d~~~~f~~~~d~~lG~~~i~L~~ 91 (1024)
..|.+...+.+|.|+|+|.+.++ ......|.|++++...... ..+...+|-+.+||-+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~--~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKES--KEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSS--S-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccc--cCccceeEEEEEEeee
Confidence 67888888899999999999998 3446789999999772110 0112688998888877
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1024 | ||||
| 3kwt_A | 148 | Munc13-1 C2b-Domain, Calcium-Free Length = 148 | 3e-07 | ||
| 2nsq_A | 155 | Crystal Structure Of The C2 Domain Of The Human E3 | 3e-05 | ||
| 1dqv_A | 296 | Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt | 3e-05 | ||
| 3hn8_A | 296 | Crystal Structure Of Synaptotagmin Length = 296 | 3e-05 | ||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 4e-04 |
| >pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148 | Back alignment and structure |
|
| >pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155 | Back alignment and structure |
|
| >pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296 | Back alignment and structure |
|
| >pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296 | Back alignment and structure |
|
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 4e-26
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 21/142 (14%)
Query: 3 STRLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI 56
S ++ + V+ Q L AKD YV VQ+GK K +++ + N NPVW E F F HN
Sbjct: 16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS 75
Query: 57 DDEELVVSVFQHNDD------SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
D + V V +DD S + +G+ + V +++ E W++L+
Sbjct: 76 SD-RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEM-----DVWYNLD-- 127
Query: 111 KTRKFTNKDCGKILLTISLNGK 132
R + G I L IS+ K
Sbjct: 128 -KRTDKSAVSGAIRLHISVEIK 148
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 2e-16
Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 14/132 (10%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPP 596
+++ +V L + + TG SDPYV + + +P W + F+
Sbjct: 18 KISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFE-CHNSS 76
Query: 597 SVLDVEVFDFDGPFDQATS----------LGHAEINFLKHTSTELADMWVSLEGKLAQSA 646
+ V V D D LG I ++ S E D+W +L+ + +SA
Sbjct: 77 DRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIE-VRTLSGE-MDVWYNLDKRTDKSA 134
Query: 647 QS-KVHLRIFLE 657
S + L I +E
Sbjct: 135 VSGAIRLHISVE 146
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 1e-24
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 20/131 (15%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDD 58
L V VL+ DLLA D + +++G + ++ + N NP WN+ F F + +I D
Sbjct: 14 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHD 73
Query: 59 EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNK 118
L V+VF + D + +G+V +P+ SI P + L K +
Sbjct: 74 -VLEVTVFDEDGD-----KPPDFLGKVAIPLLSIRDGQ-----PNCYVL---KNKDLEQA 119
Query: 119 DCGKILLTISL 129
G I L + L
Sbjct: 120 FKGVIYLEMDL 130
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 5e-20
Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 8/137 (5%)
Query: 524 GSDHGVKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQW 583
GS VK G +L V +++ +L +++ +G SDP+ + + + +P+W
Sbjct: 4 GSSGDVKDVG---ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEW 60
Query: 584 HDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLA 643
+ + F +++ VL+V VFD D LG I L L+ K
Sbjct: 61 NKVFTFP-IKDIHDVLEVTVFDED-GDKPPDFLGKVAIP-LLSIRDG-QPNCYVLKNKDL 116
Query: 644 QSAQS-KVHLRIFLENN 659
+ A ++L + L N
Sbjct: 117 EQAFKGVIYLEMDLIYN 133
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 96.9 bits (241), Expect = 3e-23
Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 18/148 (12%)
Query: 6 LYVYVLQGQDLLAKDS------YVKVQIG------KHKSKSRILKNNSNPVWNEEFVFRV 53
+ V V+ G L KD YV+V + +++ +K + NP WNEE +FRV
Sbjct: 10 VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69
Query: 54 HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTR 113
++ VF D + +G+V VP+ + E+ M P F R
Sbjct: 70 LP-QRHRILFEVF----DENRLTRD-DFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPR 123
Query: 114 KFTNKDCGKILLTISLNGKGHNLSSNRL 141
++ G + L ++ K + N
Sbjct: 124 SHKSRVKGYLRLKMTYLPKNGSEDENAD 151
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 7e-11
Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 15/142 (10%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQT------CDPQWHDILEFD 590
V+ V ++ G+ LA ++ G SDPYV T +QT +P+W++ + F
Sbjct: 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68
Query: 591 AMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFL------KHTSTELADMWVSLEGKLAQ 644
+ + EVFD + + LG ++ L + +
Sbjct: 69 -VLPQRHRILFEVFDENR-LTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHK 126
Query: 645 SAQS-KVHLRIFLENNNGVETI 665
S + L++ NG E
Sbjct: 127 SRVKGYLRLKMTYLPKNGSEDE 148
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 96.4 bits (240), Expect = 3e-23
Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 18/140 (12%)
Query: 3 STRLYVYVLQGQDLLAKDS------YVKVQIG------KHKSKSRILKNNSNPVWNEEFV 50
S + V V+ G L KD YV+V + +++ +K + NP WNEE +
Sbjct: 19 SRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEIL 78
Query: 51 FRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
FRVH L+ VF N + + +G+V VP+ + E+ + P F
Sbjct: 79 FRVHPQQH-RLLFEVFDEN-----RLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVL 132
Query: 111 KTRKFTNKDCGKILLTISLN 130
R ++ G + L ++
Sbjct: 133 HPRSHKSRVKGYLRLKMTYL 152
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 2e-11
Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 15/139 (10%)
Query: 529 VKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQT------CDPQ 582
++ + + ++ V ++ G+ LA ++ G SDPYV T +QT +P+
Sbjct: 13 LEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPK 72
Query: 583 WHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEIN------FLKHTSTELADMWV 636
W++ + F + L EVFD + + LG ++
Sbjct: 73 WNEEILFR-VHPQQHRLLFEVFDENR-LTRDDFLGQVDVPLYPLPTENPRLERPYTFKDF 130
Query: 637 SLEGKLAQSAQS-KVHLRI 654
L + +S + L++
Sbjct: 131 VLHPRSHKSRVKGYLRLKM 149
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 94.3 bits (234), Expect = 6e-23
Identities = 30/139 (21%), Positives = 61/139 (43%), Gaps = 19/139 (13%)
Query: 1 MVSTRLYVYVLQGQDLLAKDS---YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNID 57
V + L V V + + A++ YV +++ KS + ++ S P W ++F+F ++ +
Sbjct: 2 GVMSLLCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVRG-SQPSWEQDFMFEINRL- 59
Query: 58 DEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTN 117
D L V V+ + GL ++G V +P+ +I + P W +L++
Sbjct: 60 DLGLTVEVW----NKGLIWD--TMVGTVWIPLRTIRQSNEE-GPGEWLTLDSQ-----AI 107
Query: 118 KDCGKILLTISLNGKGHNL 136
+I T + H +
Sbjct: 108 MADSEICGT--KDPTFHRI 124
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 1e-05
Identities = 17/108 (15%), Positives = 42/108 (38%), Gaps = 9/108 (8%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPP 596
+L V + + + + YV +++++ ++ P W F +
Sbjct: 6 LLCVGVKKAKFDGA---QEKFNTYVTLKV-QNVKSTTIAVRGSQPSWEQDFMF-EINRLD 60
Query: 597 SVLDVEVFDFDGPFDQATSLGHAEI--NFLKHTSTELADMWVSLEGKL 642
L VEV++ +D +G I ++ ++ E W++L+ +
Sbjct: 61 LGLTVEVWNKGLIWDTM--VGTVWIPLRTIRQSNEEGPGEWLTLDSQA 106
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 95.5 bits (237), Expect = 7e-23
Identities = 29/161 (18%), Positives = 71/161 (44%), Gaps = 19/161 (11%)
Query: 1 MVSTRLYVYVLQGQDLLAKD---SYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNID 57
+ + L V V + + A++ +YV +++ +S + ++ + P W ++F+F ++ +
Sbjct: 11 GILSLLCVGVKKAKFDGAQEKFNTYVTLKVQNVESTTIAVRGS-QPSWEQDFMFEINRL- 68
Query: 58 DEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTN 117
D L V V+ + GL ++G V +P+ +I + P W +L+ + +
Sbjct: 69 DLGLTVEVW----NKGLIWD--TMVGTVWIPLRTIRQSNEE-GPGEWLTLD-SQAIMADS 120
Query: 118 KDCGKILLTISLNGKGHNLSSNRLLYLHSNVSSNESKELED 158
+ CG + + H + + L ++ E++
Sbjct: 121 EICG------TKDPTFHRILLDAHFELPLDIPEEEARYWAK 155
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 7e-05
Identities = 17/108 (15%), Positives = 41/108 (37%), Gaps = 9/108 (8%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPP 596
+L V + + + + YV ++++ ++ P W F+
Sbjct: 15 LLCVGVKKAKFDGA---QEKFNTYVTLKV-QNVESTTIAVRGSQPSWEQDFMFEI-NRLD 69
Query: 597 SVLDVEVFDFDGPFDQATSLGHAEI--NFLKHTSTELADMWVSLEGKL 642
L VEV++ +D +G I ++ ++ E W++L+ +
Sbjct: 70 LGLTVEVWNKGLIWDTM--VGTVWIPLRTIRQSNEEGPGEWLTLDSQA 115
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 6e-22
Identities = 31/134 (23%), Positives = 47/134 (35%), Gaps = 17/134 (12%)
Query: 5 RLYVYVLQGQDLLAKDS-----YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNID-- 57
L V V ++ V V K K++ + N NPVWNE F + I
Sbjct: 8 MLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLD 67
Query: 58 -DEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFT 116
L + V D G + +L+G V + + + + LP SL K +
Sbjct: 68 FSSSLGIIVK----DFETIGQN-KLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQ--- 119
Query: 117 NKDCGKILLTISLN 130
I L I +
Sbjct: 120 -DTGATIDLVIGYD 132
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 1e-15
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 8/130 (6%)
Query: 531 AQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFD 590
+ G +L V + N+ ++ G DP V + + + +P W++ILEFD
Sbjct: 2 SSGSSGMLRVIVESASNIPKTK-FGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFD 60
Query: 591 AMEEPP---SVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMW---VSLEGKLAQ 644
P S L + V DF+ Q +G A + T + + +SL + Q
Sbjct: 61 LRGIPLDFSSSLGIIVKDFET-IGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQ 119
Query: 645 SAQSKVHLRI 654
+ + L I
Sbjct: 120 DTGATIDLVI 129
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 1e-21
Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 21/131 (16%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSR-ILKNNSNPVWNEEFVFRVHNID 57
L V ++ + L D YV++ KS + P WNE F+F V
Sbjct: 11 TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE-G 69
Query: 58 DEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTN 117
EL +F + G+ + +G +P+ + E + +PPT +++ +
Sbjct: 70 TTELKAKIFDKD-----VGTEDDAVGEATIPLEPVFVEGS--IPPTAYNVVKDE------ 116
Query: 118 KDCGKILLTIS 128
+ G+I + +S
Sbjct: 117 EYKGEIWVALS 127
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 2e-17
Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 9/133 (6%)
Query: 524 GSDHGVKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQ 582
GS G L V LV L ++ DPYV TC +++ + P+
Sbjct: 1 GSSGSSGPHG---TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPE 57
Query: 583 WHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKH-TSTELADMWVSLEGK 641
W++ F E + L ++FD D + ++G A I + ++
Sbjct: 58 WNETFIFTV-SEGTTELKAKIFDKD-VGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKD 115
Query: 642 LAQSAQSKVHLRI 654
+ + ++ + +
Sbjct: 116 --EEYKGEIWVAL 126
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 91.9 bits (228), Expect = 2e-21
Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 16/133 (12%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDD 58
+L + V+ + K + YV+V + K+ N ++P W + V
Sbjct: 37 QLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT--PV 94
Query: 59 EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNK 118
+L V+ H S L+G + + +N L +L+ K +
Sbjct: 95 SKLHFRVWSHQ-----TLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQ-LGGDKEPTE 148
Query: 119 DCGKILLTISLNG 131
G L+I L+G
Sbjct: 149 TIGD--LSICLDG 159
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 3e-18
Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 7/125 (5%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPS 597
L + ++ + + PYV T +G+++ + T P+W L P S
Sbjct: 38 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIV--TPVS 95
Query: 598 VLDVEVFDFDGPFDQATSLGHAEIN---FLKHTSTELADMWVSLEGKLAQSAQSKV-HLR 653
L V+ LG A ++ LK + +L ++ V+L+ + + L
Sbjct: 96 KLHFRVWSHQ-TLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLS 154
Query: 654 IFLEN 658
I L+
Sbjct: 155 ICLDG 159
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 3e-20
Identities = 24/140 (17%), Positives = 54/140 (38%), Gaps = 25/140 (17%)
Query: 3 STRLYVYVLQGQDLLAKDS------YVKVQI--GKHKSKSRILKNNSNPVWNEEFVFRVH 54
++ + VL ++L KD + K+ + + +KN +P WN+ + V
Sbjct: 4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVG 63
Query: 55 NIDDEELVVSVFQHN----DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
+ + +SV+ H F +G VR+ ++I+ + + L+
Sbjct: 64 --KTDSITISVWNHKKIHKKQGAGF------LGCVRLLSNAISRLKDT----GYQRLDLC 111
Query: 111 KTRKFTN-KDCGKILLTISL 129
K G+I++++
Sbjct: 112 KLNPSDTDAVRGQIVVSLQT 131
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 3e-13
Identities = 19/125 (15%), Positives = 41/125 (32%), Gaps = 8/125 (6%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFT--CNGKTRTSSVQLQTCDPQWHDILEFDAMEEP 595
+ + ++ NLA + L DP+ +G+ ++ T DP+W+ +
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLY--VGK 64
Query: 596 PSVLDVEVFDFDGPF--DQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHL 652
+ + V++ A LG + S + L+ V
Sbjct: 65 TDSITISVWNHKKIHKKQGAGFLGCVRLL-SNAISRLKDTGYQRLDLCKLNPSDTDAVRG 123
Query: 653 RIFLE 657
+I +
Sbjct: 124 QIVVS 128
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 3e-19
Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 21/122 (17%)
Query: 3 STRLYVYVLQGQDLLAKDS---------YVKVQIG---KHKSKSRILKNNSNPVWNEEFV 50
S + V VL+ + YV++ I + ++R N+ NPVWNE F
Sbjct: 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFE 61
Query: 51 FRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
F + + L +++ D+ E +G VSS+ + + F
Sbjct: 62 FILDPNQENVLEITLM----DANYVMD--ETLGTATFTVSSMKVGEKKEV---PFIFNQV 112
Query: 111 KT 112
Sbjct: 113 TE 114
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 5e-14
Identities = 20/128 (15%), Positives = 46/128 (35%), Gaps = 12/128 (9%)
Query: 538 LTVALVEGVNL---ASSEMTGLSDPYVVFTCNG---KTRTSSVQLQTCDPQWHDILEFDA 591
TV ++ + A +M DPYV + + + +P W++ EF
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 592 MEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVH 651
+VL++ + D + D+ +LG A E ++ + +
Sbjct: 65 DPNQENVLEITLMDANYVMDE--TLGTATFTVSSMKVGEKKEVPFIFNQV----TEMVLE 118
Query: 652 LRIFLENN 659
+ + + ++
Sbjct: 119 MSLEVASS 126
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 83.7 bits (207), Expect = 4e-19
Identities = 19/150 (12%), Positives = 48/150 (32%), Gaps = 36/150 (24%)
Query: 1 MVSTRLYVYVLQGQDLLAKDS-----------------YVKVQIGKHK-SKSRILKNNSN 42
+ + L + + + L Y+ + + + ++ + ++
Sbjct: 3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNS 62
Query: 43 PVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPP 102
P W++EFV V + ++ ++VF + + + + +
Sbjct: 63 PAWHDEFVTDVC--NGRKIELAVFHDAP-----IGYDDFVANCTIQFEELLQNGSRHF-E 114
Query: 103 TWFSLETPKTRKFTNKDCGKILLTISLNGK 132
W LE GK+ + I L+G
Sbjct: 115 DWIDLEP----------EGKVYVIIDLSGS 134
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 2e-17
Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 23/139 (16%)
Query: 537 VLTVALVEGVNL-----------ASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWH 584
+L + + E V+L T L DPY+ + + ++ + +T P WH
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 585 DILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINF--LKHTSTELADMWVSLEGKL 642
D EF +++ VF P + + I F L + + W+ LE
Sbjct: 67 D--EFVTDVCNGRKIELAVFHDA-PIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP-- 121
Query: 643 AQSAQSKVHLRIFLENNNG 661
+ KV++ I L ++G
Sbjct: 122 ----EGKVYVIIDLSGSSG 136
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 2e-18
Identities = 25/124 (20%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 5 RLYVYVLQGQDLLAKDS-----YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRVH 54
L +++++G+ L++K YVK+ + K++ + + +P ++E F F V
Sbjct: 28 VLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQ 87
Query: 55 NIDDEE-LVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTR 113
DD++ L+V+V+ + L+G + V S+ D + W+ L
Sbjct: 88 EEDDQKRLLVTVW----NRASQSRQSGLIGCMSFGVKSLLTPDKEI--SGWYYLLGEHLG 141
Query: 114 KFTN 117
+ +
Sbjct: 142 RTKH 145
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 4e-09
Identities = 32/151 (21%), Positives = 51/151 (33%), Gaps = 23/151 (15%)
Query: 522 RKGSDHGVKAQGDGWV----------LTVALVEGVNLASSEMTGLSDPYV-VF-----TC 565
H K QG G + L + ++EG L S + G DPYV + +
Sbjct: 3 HHHHHHSHKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSR 61
Query: 566 NGKTRTSSVQLQTCDPQWHDILEFD-AMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFL 624
+T DP +H+ F E+ L V V++ Q+ +G
Sbjct: 62 LRHQKTQ-TVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVK 120
Query: 625 K-HTSTELADMWVSLEGKLAQSAQSKVHLRI 654
T + W L L + HL++
Sbjct: 121 SLLTPDKEISGWYYL---LGEHLGRTKHLKV 148
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 81.2 bits (200), Expect = 5e-18
Identities = 24/144 (16%), Positives = 41/144 (28%), Gaps = 35/144 (24%)
Query: 6 LYVYVLQGQDLLAKDS----------------YVKVQIG-KHKSKSRILKNNSNPVWNEE 48
L V + + L Y+ V + ++ + + P +NEE
Sbjct: 31 LRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEE 90
Query: 49 FVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDN-HMLPPTWFSL 107
F V D L ++VF G + + + W L
Sbjct: 91 FCANVT--DGGHLELAVF----HETPLGYD-HFVANCTLQFQELLRTTGASDTFEGWVDL 143
Query: 108 ETPKTRKFTNKDCGKILLTISLNG 131
E GK+ + I+L G
Sbjct: 144 EP----------EGKVFVVITLTG 157
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 2e-13
Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 24/136 (17%)
Query: 537 VLTVALVEGVNL----------ASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWHD 585
L V + E V L + L DPY+ + + + +S + +T P +++
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89
Query: 586 ILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINF----LKHTSTELADMWVSLEGK 641
EF A L++ VF P + + + F +++ + WV LE
Sbjct: 90 --EFCANVTDGGHLELAVFHET-PLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP- 145
Query: 642 LAQSAQSKVHLRIFLE 657
+ KV + I L
Sbjct: 146 -----EGKVFVVITLT 156
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 9e-18
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 21/125 (16%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRV 53
L V V ++L+ D YVK+++ + K K++ +K + NP WNE F F++
Sbjct: 32 VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 91
Query: 54 HNID-DEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKT 112
D D L V ++ + S + MG + +S + WF L + +
Sbjct: 92 KESDKDRRLSVEIWDWD-----LTSRNDFMGSLSFGISELQKAG----VDGWFKLLSQEE 142
Query: 113 RKFTN 117
++ N
Sbjct: 143 GEYFN 147
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 6e-12
Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 8/119 (6%)
Query: 529 VKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTC-----NGKTRTSSVQLQTCDPQW 583
++A D VL V + + NL + GLSDPYV + + + + +P+W
Sbjct: 24 IQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEW 83
Query: 584 HDILEFD-AMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641
++ F + L VE++D+D + +G + D W L +
Sbjct: 84 NETFRFQLKESDKDRRLSVEIWDWD-LTSRNDFMGSLSFG-ISELQKAGVDGWFKLLSQ 140
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 6e-17
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 19/118 (16%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRVH- 54
+L V ++Q +L A D YVKV + K K ++++ + NPV+NE+F F+V
Sbjct: 43 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 102
Query: 55 -NIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPK 111
+ + LV++V+ D S +++G +VP++++ W L++ +
Sbjct: 103 SELGGKTLVMAVY-DFD----RFSKHDIIGEFKVPMNTVDFGHVT---EEWRDLQSAE 152
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 2e-09
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV-VFTCNGKTRT--SSVQLQTCDPQWHDILEFD-AME 593
L V +++ L + +M G SDPYV VF K + + V +T +P +++ F
Sbjct: 44 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 594 EPPS-VLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641
E L + V+DFD F + +G ++ + + W L+
Sbjct: 104 ELGGKTLVMAVYDFD-RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 151
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 7e-17
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 19/116 (16%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRVH- 54
+L V ++Q +L A D YVKV + K K ++++ + NPV+NE+F F+V
Sbjct: 35 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 94
Query: 55 -NIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109
+ + LV++V+ D F +++G +VP++++ W L++
Sbjct: 95 SELGGKTLVMAVY----DFDRFSKH-DIIGEFKVPMNTVDFGHVT---EEWRDLQS 142
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 1e-09
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV---VFTCNGKTRTSSVQLQTCDPQWHDILEFD-AME 593
L V +++ L + +M G SDPYV + K + V +T +P +++ F
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 594 EPPS-VLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639
E L + V+DFD F + +G ++ + + W L+
Sbjct: 96 ELGGKTLVMAVYDFD-RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 1e-16
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 20/124 (16%)
Query: 3 STRLYVYVLQGQDLLAKDS------YVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRV 53
+ L V +++ Q+L AKD +VK+ + KHK ++++ + N NP WNE F+F
Sbjct: 25 ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEG 84
Query: 54 HNIDD---EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
+ L + V D F + + +G V +P++ + W L+
Sbjct: 85 FPYEKVVQRILYLQVL----DYDRFSRN-DPIGEVSIPLNKVDLTQMQ---TFWKDLKPS 136
Query: 111 KTRK 114
Sbjct: 137 GPSS 140
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 4e-10
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTC---NGKTRTSSVQLQTCDPQWHDILEFDAM-- 592
LTV +++ L + + +G SDP+V + V+ + +P W++ F+
Sbjct: 28 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 87
Query: 593 EEPPS-VLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSA 646
E+ +L ++V D+D F + +G I K T++ W L+ S
Sbjct: 88 EKVVQRILYLQVLDYD-RFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSGPSSG 141
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 1e-16
Identities = 24/124 (19%), Positives = 55/124 (44%), Gaps = 21/124 (16%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRV 53
+L V +L +DL +++ YVK+ K+K +++ +K P WN+ F++
Sbjct: 22 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSP 81
Query: 54 ---HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
+ L ++++ D + + E +G + + + + +D P W+ L+T
Sbjct: 82 VHRREFRERMLEITLW---DQARVREEESEFLGEILIELETALLDD----EPHWYKLQTH 134
Query: 111 KTRK 114
+
Sbjct: 135 DSGP 138
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 1e-08
Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 10/113 (8%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV-VF----TCNGKTRTSSVQLQTCDPQWHDILEFDAM 592
L V ++ +L S E +PYV ++ + R + +T +P+W+ + +
Sbjct: 23 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 82
Query: 593 EE---PPSVLDVEVFDFDGPFDQATS-LGHAEINFLKHTSTELADMWVSLEGK 641
+L++ ++D ++ + LG I L+ + W L+
Sbjct: 83 HRREFRERMLEITLWDQARVREEESEFLGEILIE-LETALLDDEPHWYKLQTH 134
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 2e-16
Identities = 28/129 (21%), Positives = 64/129 (49%), Gaps = 31/129 (24%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI--------------GKHKSKSRILKNNSNPV 44
L +++LQ ++L+ +D+ +VKV + ++K +++ ++ + NP
Sbjct: 19 NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPE 78
Query: 45 WNEEFVFRVHNIDD---EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLP 101
WN+ +++ +++ + L V+V+ D F S+ + +G V + +SS + DN
Sbjct: 79 WNQTVIYKSISMEQLMKKTLEVTVW----DYDRFSSN-DFLGEVLIDLSSTSHLDNT--- 130
Query: 102 PTWFSLETP 110
P W+ L+
Sbjct: 131 PRWYPLKEQ 139
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 8e-09
Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 18/121 (14%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVF--------------TCNGKTRTSSVQLQTCDPQW 583
L + +++ NL + G SDP+V R + ++ +P+W
Sbjct: 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79
Query: 584 HDILEFDAMEEP---PSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640
+ + + ++ L+V V+D+D F LG I+ + + W L+
Sbjct: 80 NQTVIYKSISMEQLMKKTLEVTVWDYD-RFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE 138
Query: 641 K 641
+
Sbjct: 139 Q 139
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 3e-16
Identities = 23/118 (19%), Positives = 54/118 (45%), Gaps = 21/118 (17%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRV 53
+L V +L +DL +++ YVK+ K+K +++ +K P WN+ F++
Sbjct: 19 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSP 78
Query: 54 HNIDD---EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108
+ + L ++++ D + + E +G + + + + +D P W+ L+
Sbjct: 79 VHRREFRERMLEITLW---DQARVREEESEFLGEILIELETALLDD----EPHWYKLQ 129
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 4e-09
Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 12/112 (10%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV-VF-----TCNGKTRTSSVQLQTCDPQWHDILEFDA 591
L V ++ +L S E +PYV ++ + K RT +T +P+W+ +
Sbjct: 20 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRT-KTVKKTLEPKWNQTFIYSP 78
Query: 592 MEE---PPSVLDVEVFDFDG-PFDQATSLGHAEINFLKHTSTELADMWVSLE 639
+ +L++ ++D +++ LG I L+ + W L+
Sbjct: 79 VHRREFRERMLEITLWDQARVREEESEFLGEILIE-LETALLDDEPHWYKLQ 129
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 4e-16
Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 18/107 (16%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRV 53
+ V +++ ++L A D YVKV + K K+ K N NP++NE F F +
Sbjct: 17 SIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDI 76
Query: 54 --HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNH 98
+ + ++++V + S +++G++ + S E H
Sbjct: 77 PTEKLRETTIIITVMDKD-----KLSRNDVIGKIYLSWKSGPGEVKH 118
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 2e-07
Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV-VFTCNGKTRTS----SVQLQTCDPQWHDILEFD-A 591
+ V +++ NL + ++ G SDPYV V+ R + + +P +++ FD
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIP 77
Query: 592 MEEPPSV-LDVEVFDFDGPFDQATSLGHAEI 621
E+ + + V D D + +G +
Sbjct: 78 TEKLRETTIIITVMDKDK-LSRNDVIGKIYL 107
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 8e-16
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 20/144 (13%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRVHN 55
+L V +LQ DL AKDS YVK+ + K K ++++ + NP++NE F F V
Sbjct: 21 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPL 80
Query: 56 IDDEE--LVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTR 113
+ + L SV+ + S +L+G+V + AE P W + +
Sbjct: 81 AELAQRKLHFSVYDFD-----RFSRHDLIGQVVLDNLLELAEQPPDR-PLWRDILEGGSE 134
Query: 114 KFTNKDCGKILLTISLNGKGHNLS 137
D G++ ++ L+
Sbjct: 135 ---KADLGELNFSLCYLPTAGLLT 155
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 3e-14
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 18/104 (17%)
Query: 5 RLYVYVLQGQDLLAK------DSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRV 53
L V +++ +L A D YVK + K K+ I KN NP +NE VF V
Sbjct: 153 LLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDV 212
Query: 54 --HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAE 95
++++ L ++V ++ E++G RV +
Sbjct: 213 APESVENVGLSIAVVDYD-----CIGHNEVIGVCRVGPEAADPH 251
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV---VFTCNGKTRTSSVQLQTCDPQWHDILEFD-AME 593
L V +++ ++L + + G SDPYV + K + V +T +P +++ +F +
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 594 EPPS-VLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639
E L V+DFD F + +G ++ L + + D + +
Sbjct: 82 ELAQRKLHFSVYDFD-RFSRHDLIGQVVLDNLLELAEQPPDRPLWRD 127
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 528 GVKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFT--CNGK---TRTSSVQLQTCDPQ 582
+ +LTV +++ NL + ++TG SDPYV + G+ R +S++ T +P
Sbjct: 144 SLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPT 203
Query: 583 WHDILEFDAMEEPPS--VLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSL 638
+++ L FD E L + V D+D +G + + + W +
Sbjct: 204 YNEALVFDVAPESVENVGLSIAVVDYDC-IGHNEVIGVCRVG-PEAADPHGREHWAEM 259
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 8e-16
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 27/129 (20%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRV 53
+L V +L+ ++L D YVK+ + K K+ I KN NP +NE F F V
Sbjct: 151 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 210
Query: 54 --HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNH---MLP------P 102
I ++VV+V ++ + +G+V V +S AE H ML
Sbjct: 211 PFEQIQKVQVVVTVLDYD-----KIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA 265
Query: 103 TWFSLETPK 111
W +L+ +
Sbjct: 266 QWHTLQVEE 274
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 4e-15
Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRV-- 53
+L V ++Q +L A D YVKV + K K ++++ + NPV+NE+F F+V
Sbjct: 20 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 79
Query: 54 HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTR 113
+ + LV++V+ + S +++G +VP++++ T +
Sbjct: 80 SELAGKTLVMAVYDFDR-----FSKHDIIGEFKVPMNTVDFGH-----VTEEWRDLQSAE 129
Query: 114 KFTNKDCGKILLTISLNGKGHNLS 137
K + G I ++ L+
Sbjct: 130 KEEQEKLGDICFSLRYVPTAGKLT 153
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 4e-10
Identities = 39/197 (19%), Positives = 70/197 (35%), Gaps = 36/197 (18%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFT---CNGKTRTSSVQLQTCDPQWHDILEFD-AME 593
L V +++ L + +M G SDPYV K + V +T +P +++ F
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 594 EPPS-VLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHL 652
E L + V+DFD F + +G ++ + + W L+ + + +
Sbjct: 81 ELAGKTLVMAVYDFD-RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDI 139
Query: 653 RIFLENNNGVE----TIKE-------------------YLTKMEKEVGKK-----LNLRS 684
L I E +L + K + KK N +
Sbjct: 140 CFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLN 199
Query: 685 PHRNSTFQKLFALPPEE 701
P+ N +F F +P E+
Sbjct: 200 PYYNESFS--FEVPFEQ 214
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 9e-16
Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 23/123 (18%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRV 53
L V +++ L A D+ +VK+ + K K K++I K NP +NEEF + +
Sbjct: 38 GLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDI 97
Query: 54 --HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPK 111
++ + L +SV+ ++ G S + +G ++ +S+ H W+ K
Sbjct: 98 KHSDLAKKSLDISVWDYD-----IGKSNDYIGGCQLGISAKGERLKH-----WYECLKNK 147
Query: 112 TRK 114
+K
Sbjct: 148 DKK 150
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 21/117 (17%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV-VFTCNGKTRTS----SVQLQTCDPQWHDILEFD-A 591
L V ++ V+LA+ + G SDP+V ++ + + ++ +T +P++++ +D
Sbjct: 39 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 98
Query: 592 MEEPPSV-LDVEVFDFDGPFDQATSLGHAEINFLKHTSTELA---DMWVSLEGKLAQ 644
+ LD+ V+D+D +G ++ + L + + + K+ +
Sbjct: 99 HSDLAKKSLDISVWDYD-IGKSNDYIGGCQLG-ISAKGERLKHWYECLKNKDKKIER 153
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 1e-15
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 18/107 (16%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRV 53
L V VL+ + L D YVKV + K K+ + K N V+NE FVF +
Sbjct: 31 TLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDI 90
Query: 54 --HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNH 98
++++ + V GS E++GR+ + ++ + H
Sbjct: 91 PCESLEEISVEFLVLDSE-----RGSRNEVIGRLVLGATAEGSGGGH 132
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 5e-07
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV-VFTCNGKTRTS----SVQLQTCDPQWHDILEFD-A 591
LTV +++ +L S+++GLSDPYV V + K R S V+ T + ++++ FD
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 91
Query: 592 MEEPPSV-LDVEVFDFDG 608
E + ++ V D +
Sbjct: 92 CESLEEISVEFLVLDSER 109
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 2e-15
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 27/129 (20%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQIGKH-----KSKSRILKNNSNPVWNEEFVFRV 53
+L V +L+ ++L D YVK+ + ++ K K+ I KN NP +NE F F V
Sbjct: 26 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 85
Query: 54 --HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNH---MLP------P 102
I ++VV+V ++ + +G+V V +S AE H ML
Sbjct: 86 PFEQIQKVQVVVTVLDYDK-----IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA 140
Query: 103 TWFSLETPK 111
W +L+ +
Sbjct: 141 QWHTLQVEE 149
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 7e-07
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV-VFTCNGKTRTS----SVQLQTCDPQWHDILEFD-A 591
LTV ++E NL ++ GLSDPYV + R +++ T +P +++ F+
Sbjct: 27 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86
Query: 592 MEEPPSV-LDVEVFDFDGPFDQATSLGHAEI 621
E+ V + V V D+D + ++G +
Sbjct: 87 FEQIQKVQVVVTVLDYDK-IGKNDAIGKVFV 116
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 2e-15
Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 26/126 (20%)
Query: 5 RLYVYVLQGQDLLAK-------------DSYVKVQI---GKHKSKSRILKNNSNPVWNEE 48
L V V++ +DL + YVK+ + K+ ++ + + PV+ E
Sbjct: 27 HLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEER 86
Query: 49 FVFRVH--NIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFS 106
+ F + L+++V D F ++G+V VP+ + D W +
Sbjct: 87 YTFEIPFLEAQRRTLLLTVV----DFDKFSRH-CVIGKVSVPLCEV---DLVKGGHWWKA 138
Query: 107 LETPKT 112
L
Sbjct: 139 LIPSGP 144
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 1e-06
Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 13/121 (10%)
Query: 538 LTVALVEGVNLA-------SSEMTGLSDPYV---VFTCNGKTRTSSVQLQTCDPQWHDIL 587
LTV ++E +L S + S+PYV + ++ + V+ +T P + +
Sbjct: 28 LTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERY 87
Query: 588 EFD--AMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS 645
F+ +E L + V DFD F + +G + + + W +L S
Sbjct: 88 TFEIPFLEAQRRTLLLTVVDFD-KFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPSGPSS 146
Query: 646 A 646
Sbjct: 147 G 147
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 2e-15
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 22/118 (18%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRV 53
L +++ + L DS YVK+ + +K +++ L+N NPVWNE +
Sbjct: 30 NLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHG 89
Query: 54 ---HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108
++ + L +SV D FG + E +G R + + A LE
Sbjct: 90 ITEEDMQRKTLRISVC----DEDKFGHN-EFIGETRFSLKKLKANQRKNF---NICLE 139
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 6e-11
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 9/110 (8%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVF-----TCNGKTRTSSVQLQTCDPQWHDILEFDAM 592
L ++ L + GL+DPYV + T +P W++ L++ +
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90
Query: 593 EE---PPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639
E L + V D D F +G + K + + + + LE
Sbjct: 91 TEEDMQRKTLRISVCDED-KFGHNEFIGETRFSLKKLKANQRKNFNICLE 139
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 2e-15
Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 25/124 (20%)
Query: 5 RLYVYVLQGQDLLAKDS-------YVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRVH 54
V + + + L A D Y+K+ I KHK K+R+L+ +P ++E F F +
Sbjct: 23 AFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTF--Y 80
Query: 55 NIDDEE-----LVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL-E 108
I + L ++ F +++G V +P+S I + ML +
Sbjct: 81 GIPYTQIQELALHFTIL----SFDRFSRD-DIIGEVLIPLSGIELSEGKML--MNREIIS 133
Query: 109 TPKT 112
P +
Sbjct: 134 GPSS 137
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 7/77 (9%)
Query: 538 LTVALVEGVNLASSEMTGL-SDPYV---VFTCNGKTRTSSVQLQTCDPQWHDILEFDAME 593
V + E L + + + SDPY+ + + V +T DP + + F +
Sbjct: 24 FVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIP 83
Query: 594 E---PPSVLDVEVFDFD 607
L + FD
Sbjct: 84 YTQIQELALHFTILSFD 100
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 2e-15
Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 17/117 (14%)
Query: 5 RLYVYVLQGQDLLAK---DSYVKVQI----GKHKSKSRILKNNSNPVWNEEFVFRVH--N 55
L+V L+ D YV+ + G ++++ + K + W E V +
Sbjct: 27 ELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEE 86
Query: 56 IDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKT 112
+ L +++ F + G +R+ + + W L+T
Sbjct: 87 LPTATLTLTLR----TCDRFSRH-SVAGELRLGLDGTSVPLG---AAQWGELKTSGP 135
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 4e-07
Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 10/115 (8%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV---VFTCNGKT-RTSSVQLQTCDPQWHDILEFD-AM 592
L V +E V G D YV V G ++++ + W + L A
Sbjct: 28 LFVTRLEAVTSNHD---GGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAE 84
Query: 593 EEPPS-VLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSA 646
EE P+ L + + D F + + G + + A W L+ S
Sbjct: 85 EELPTATLTLTLRTCD-RFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSGPSSG 138
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 4e-15
Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 18/116 (15%)
Query: 5 RLYVYVLQGQDLLAKDS-----YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRVH 54
+L V V ++L+A YV++ + + K+ + K NPV+++ F F V
Sbjct: 25 KLIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVS 84
Query: 55 --NIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108
+ L V+V + G L+G+V V ++S W+ L
Sbjct: 85 LPEVQRRTLDVAVK---NSGGFLSKDKGLLGKVLVALASEELAKGW---TQWYDLT 134
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 2e-07
Identities = 26/111 (23%), Positives = 40/111 (36%), Gaps = 11/111 (9%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV-VF-----TCNGKTRTSSVQLQTCDPQWHDILEFD- 590
L V + NL + G SDPYV ++ +G+ +T V +T +P + +F
Sbjct: 26 LIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTH-VSKKTLNPVFDQSFDFSV 83
Query: 591 -AMEEPPSVLDVEVFDFDGPF-DQATSLGHAEINFLKHTSTELADMWVSLE 639
E LDV V + G LG + + W L
Sbjct: 84 SLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLT 134
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 8e-15
Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 22/120 (18%)
Query: 5 RLYVYVLQGQDLLAKDS-------YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFR 52
L V+V + L D YVK + + K K+ I ++ NP+++E +
Sbjct: 24 SLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYE 83
Query: 53 VH--NIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
+ + L SV+ G FG + +G + + S + L
Sbjct: 84 IPESLLAQRTLQFSVW----HHGRFGRN-TFLGEAEIQMDSWKLDKKL---DHCLPLHGK 135
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 1e-09
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 11/125 (8%)
Query: 538 LTVALVEGVNLAS-SEMTGLSDPYV-VF-----TCNGKTRTSSVQLQTCDPQWHDILEFD 590
L V + E LA E S+PYV + + GK +T S++ T +P + + L ++
Sbjct: 25 LVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKT-SIKRDTVNPLYDETLRYE 83
Query: 591 --AMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQS 648
L V+ F + T LG AEI + D + L GK++ ++
Sbjct: 84 IPESLLAQRTLQFSVWHHG-RFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAESEG 142
Query: 649 KVHLR 653
H
Sbjct: 143 HHHHH 147
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 3e-14
Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 20/118 (16%)
Query: 5 RLYVYVLQGQDLLAKDS-------YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFR 52
+L V V++ + L K YVKV + K K+RI + +P++ + VF
Sbjct: 31 QLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFD 90
Query: 53 VHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
+ + L V V+ MG ++ + + W+ L P
Sbjct: 91 E-SPQGKVLQVIVWGDYG----RMDHKCFMGVAQILLEELDLSSMV---IGWYKLFPP 140
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 3e-06
Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 13/113 (11%)
Query: 538 LTVALVEGVNLASSEMT-GLSDPYVVF------TCNGKTRTSSVQLQTCDPQWHDILEFD 590
L V ++ +L + PYV C K +T + +T DP + L FD
Sbjct: 32 LEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTR-IARKTLDPLYQQSLVFD 90
Query: 591 AMEEPPS-VLDVEVF-DFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641
E P VL V V+ D+ D +G A+I + + + W L
Sbjct: 91 --ESPQGKVLQVIVWGDYG-RMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP 140
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 4e-14
Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 22/123 (17%)
Query: 3 STRLYVYVLQGQDLLAKDS-----YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFR 52
+ L++ V+ +DL+ +D YVK + K K++I + NP +NE V+
Sbjct: 19 NGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYS 78
Query: 53 VHNIDDEE---LVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109
++ + L +SV + + +G + +P+ + W+ L T
Sbjct: 79 GYSKETLRQRELQLSVL----SAESLREN-FFLGGITLPLKDF---NLSKETVKWYQL-T 129
Query: 110 PKT 112
T
Sbjct: 130 AAT 132
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 5e-07
Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 12/113 (10%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVF------TCNGKTRTSSVQLQTCDPQWHDILEFDA 591
L + ++ +L + + +PYV K +T + +T +P ++++L +
Sbjct: 22 LFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTK-ISRKTRNPTFNEMLVYSG 79
Query: 592 M--EEPPS-VLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641
E L + V + + LG + ++ W L
Sbjct: 80 YSKETLRQRELQLSVLSAES-LRENFFLGGITLPLKDFNLSKETVKWYQLTAA 131
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 1e-12
Identities = 17/117 (14%), Positives = 41/117 (35%), Gaps = 21/117 (17%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI------GKHKSKSRILKNNSNPVWNEEFVFR 52
+ + ++Q +L A ++V + ++R L + V+NE F
Sbjct: 44 QFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVS 103
Query: 53 VH--NIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107
+ + + L V V + E +G ++ ++ + W++L
Sbjct: 104 MSYPALHQKTLRVDVCTTDR-----SHLEECLGGAQISLAEVCRSGERS--TRWYNL 153
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 13/107 (12%), Positives = 31/107 (28%), Gaps = 10/107 (9%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV------VFTCNGKTRTSSVQLQTCDPQWHDILEFDA 591
+ +++ NL++ + + + ++++
Sbjct: 45 FAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSM 104
Query: 592 MEEPPS--VLDVEVFDFDGPFDQATSLGHAEINFLK-HTSTELADMW 635
L V+V D LG A+I+ + S E + W
Sbjct: 105 SYPALHQKTLRVDVCTTD-RSHLEECLGGAQISLAEVCRSGERSTRW 150
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 71.1 bits (173), Expect = 1e-12
Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 18/128 (14%)
Query: 5 RLYVYVLQGQDLLAK---------DSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFR 52
+ V VL+ + D YV++ I + ++R N+ NPVWNE F F
Sbjct: 19 KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI 78
Query: 53 VHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKT 112
+ + L +++ D+ E +G VSS+ + +P + +
Sbjct: 79 LDPNQENVLEITLM----DANYVMD--ETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVL 132
Query: 113 RKFTNKDC 120
Sbjct: 133 EMSLEVCS 140
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 58.8 bits (141), Expect = 7e-09
Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 8/117 (6%)
Query: 526 DHGVKAQGDGWVLTVALVEGVNL---ASSEMTGLSDPYVVF---TCNGKTRTSSVQLQTC 579
H + TV ++ + A +M DPYV T + +
Sbjct: 8 QHIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDI 67
Query: 580 DPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWV 636
+P W++ EF +VL++ + D + D+ +LG A E ++
Sbjct: 68 NPVWNETFEFILDPNQENVLEITLMDANYVMDE--TLGTATFTVSSMKVGEKKEVPF 122
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 63.8 bits (154), Expect = 2e-10
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 13/109 (11%)
Query: 8 VYVLQGQDLLAKDS-----YVKVQIGKHKSKSRILKNNSNPVWNEEFVFR-VHNIDDEEL 61
V + + L + Y+KV G + ++ ++ NN+NP W ++ F V L
Sbjct: 398 VSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPL 457
Query: 62 VVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLP--PTWFSLE 108
V V+ + +G +L+G S E L FS
Sbjct: 458 RVQVWDAD-----YGWDDDLLGSCDRSPHSGFHEVTCELNHGRVKFSYH 501
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 53.0 bits (126), Expect = 3e-07
Identities = 26/155 (16%), Positives = 51/155 (32%), Gaps = 4/155 (2%)
Query: 470 HILLCEPSKRQGLEFYGLDLPDSFGELISCGILVIQLEQVF-NMVGHFVRARLRKGSDHG 528
+L + KR+ L S +C + + + +
Sbjct: 327 TLLEEQNPKREALRQAISHYIMSRARWQNCSRPCRSGQHKSSHDSCQCECQDSKVTNQDC 386
Query: 529 VKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILE 588
Q L V+ +L + T +D Y+ G+ + V +P+W D ++
Sbjct: 387 CPRQRGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMD 445
Query: 589 FDAM-EEPPSVLDVEVFDFDGPFDQATSLGHAEIN 622
F+ + L V+V+D D LG + +
Sbjct: 446 FENVLLSTGGPLRVQVWDAD-YGWDDDLLGSCDRS 479
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.6 bits (151), Expect = 6e-10
Identities = 98/681 (14%), Positives = 190/681 (27%), Gaps = 208/681 (30%)
Query: 175 DVTEGNHLMKAMVSHLEKIFNKN-------D---QGLKTEDSSELSSTPSDYE------D 218
+ E + K ++S E F N D L E+ + +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 219 CVEEHPPS--HNF-EEAIK-----MMQSRENEGDMPENLQGGIL--LDQLYQVSPCDLNT 268
+ F EE ++ +M + E P + + D+LY +
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ----- 124
Query: 269 FLFAPDS--------QFRKDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKAATKLVK 320
+FA + + R+ L EL+ K+V + + + K
Sbjct: 125 -VFAKYNVSRLQPYLKLRQALLELRPAKNV-----------------LIDGVLGSGKTWV 166
Query: 321 AVKATEQQTYLKANGQEFAIL-VTVSTPDVPYGNTFNVQLLYKIIPGPELSSGEDSSHLI 379
A+ +F I + + + P +Q L I P +S D S I
Sbjct: 167 ALDVCLSYKVQCKM--DFKIFWLNLKNCNSPETVLEMLQKLLYQI-DPNWTSRSDHSSNI 223
Query: 380 ISWGIDFHQSTMMRGMIEGGARQGLKESF--EQFAN-LLAQNLKILDSKDASDKDHMLA- 435
+ H + L+ + + N LL +L + + A
Sbjct: 224 K---LRIHS-----------IQAELRRLLKSKPYENCLL-----VLL--NVQNAKAWNAF 262
Query: 436 -----TLQTEQQSDWELASEYFWNFTVVSAGFMILYVVVHILLCEPSKRQGLEFYGL--- 487
L T + +SA + H + + +
Sbjct: 263 NLSCKILLTTRFKQ---------VTDFLSAATTTHISLDHHSMTL-TPDEVKSLLLKYLD 312
Query: 488 ----DLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVKAQGDGW--VLTVA 541
DLP E+++ + +++ +R G D W V
Sbjct: 313 CRPQDLPR---EVLTTNPRRL------SIIA----ESIRDGLAT-----WDNWKHVNCDK 354
Query: 542 LVEGV-----NLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPP 596
L + L +E + D VF + + + L W D+++ +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI-PTIL-LSLI---WFDVIK----SDVM 405
Query: 597 SVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRI-- 654
V++ SL E + T + + +++ L+ KL +H I
Sbjct: 406 VVVN---------KLHKYSL--VEKQPKESTIS-IPSIYLELKVKLENEYA--LHRSIVD 451
Query: 655 -------FLENNNGVETIKEY--------LTKMEKEVGKKLNLRSPHRNSTFQKLFALPP 699
F ++ + +Y L +E R + F+ +F
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP----------ERMTLFRMVFL--- 498
Query: 700 EEFLIKDFTCYLKRKMPLQGRLFLSARIVGFYANLFG-----------NKTKFFFLWEDI 748
DF +L++K+ + G N N K+ L I
Sbjct: 499 ------DFR-FLEQKIRHDS---TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548
Query: 749 EDIQILSPSLATVGSPSLVII 769
D + + S ++
Sbjct: 549 LDF-LPKIEENLICSKYTDLL 568
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 7e-09
Identities = 81/614 (13%), Positives = 169/614 (27%), Gaps = 188/614 (30%)
Query: 14 QDLLAKD-SYVKVQIGKH-KSKSRILKNNS---NPVWNEEFVFRVHNIDDEELVVSV--- 65
+++L + ++ I + S + + + ++N+ VF +N+ + + +
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 66 ---FQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGK 122
+ + + G G G+ TW +L+ + K K K
Sbjct: 144 LLELRPAKNVLIDGVLG--SGK------------------TWVALDVCLSYKVQCKMDFK 183
Query: 123 IL-LTISLNGKGHNLSSNRLLYLHSNVSSNESKELEDPCVLSHDVSCSKAP--------- 172
I L + N L L + N + + + + +A
Sbjct: 184 IFWLNLK-NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 173 ---CL----DVTEGNHLMKAMVSHLEKIFNKNDQGL-KTEDSS--ELSSTPSDYEDCVEE 222
CL +V FN + + L T + S + ++
Sbjct: 243 YENCLLVLLNVQNAKAW---------NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 223 HPPSHNFEEAIKMMQS--RENEGDMPENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKD 280
H + +E ++ D+P ++ +P L+
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPR---------EVLTTNPRRLSII----------- 333
Query: 281 LAELQGTKDVQEGP--WE-WKSGEMTCLTRAVSYMKAATKLVKAVKATEQQTYLKANGQE 337
AE +++G W+ WK LT + + ++ E +
Sbjct: 334 -AES-----IRDGLATWDNWKHVNCDKLTTIIE------SSLNVLEPAEYRKMFD----R 377
Query: 338 FAILVTVSTPDVPYGNTFNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMM----- 392
++ P IP LS + W M+
Sbjct: 378 LSVFP----PSAH-------------IPTILLS---------LIWFDVIKSDVMVVVNKL 411
Query: 393 --RGMIEGGARQGLK-------ESFEQFANLLAQNLKILDS---KDASDKDHMLATLQTE 440
++E ++ E + N A + I+D D D ++
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP----- 466
Query: 441 QQSDWELASEYFWNFTVVSAGFMILYVVVHILLCEPSKRQGL--EFYGLDLPDSF--GEL 496
D +YF++ I + H+ E +R L + LD F ++
Sbjct: 467 PYLD-----QYFYSH--------IGH---HLKNIEHPERMTLFRMVF-LDF--RFLEQKI 507
Query: 497 ISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVKAQGDGWVLTVALVE-----GVNLASS 551
+ N + +L+ + L A+++ NL S
Sbjct: 508 RHDSTAWNASGSILNTLQ-----QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562
Query: 552 EMT-----GLSDPY 560
+ T L
Sbjct: 563 KYTDLLRIALMAED 576
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 4e-05
Identities = 87/655 (13%), Positives = 158/655 (24%), Gaps = 248/655 (37%)
Query: 419 LKILDSKDASDK----------DHMLATLQTEQQSDWELASEYFWNFTVVSAGFMILYVV 468
+ D KD D DH++ + + FW
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR-----LFW--------------- 69
Query: 469 VHILLCEPSKRQGLEFYGLDLPDSFGELIS------------CGILVIQLEQVFNMV--- 513
L + +F L ++ L+S + + Q ++++N
Sbjct: 70 ---TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 514 --GHFVRAR-----------LRKGSD---HGVKAQGDG-WVLTVALVEGVNLASSEMTGL 556
+ R + LR + GV G G + + ++ S
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL--GSGKTWVAL------DVCLSYKVQC 178
Query: 557 SDPYVVF-----TCNGKTRTSSVQLQT-C---DPQWHDILEFDAMEEPPSVLDVEVFDFD 607
+ +F CN T LQ DP W D +
Sbjct: 179 KMDFKIFWLNLKNCN-SPETVLEMLQKLLYQIDPNWTS--RSDHSSNIKLRIH------- 228
Query: 608 GPFDQATSLGHAEINFLKHTSTE-----LADMWVSLEGKLAQSAQSKVHLRIFLENNNGV 662
S+ LK E L ++ + F N
Sbjct: 229 -------SIQAELRRLLKSKPYENCLLVLLNVQ------------NAKAWNAF---NLSC 266
Query: 663 ETIKEYLTKMEKEVGKKLNLRSPHRNSTFQKLFALPPEEFLIKDFTCYLKRKMPLQGRLF 722
+ + LT K+V L+ + S L P+E L
Sbjct: 267 KIL---LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK----------------SLL 307
Query: 723 LSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGRGLDARHGA 782
L +L +D+ P +P + I+
Sbjct: 308 LK------------------YLDCRPQDL----PREVLTTNPRRLSII----------AE 335
Query: 783 KSQDEEGRLRFYFQSFVSFNDASRTIMALWRSRTLTAYQKEQIAEEQQVQEEMSTAADRG 842
+D + V+ + + I + + + AE +++ + +S
Sbjct: 336 SIRDGLATWDNWKH--VNCDKLTTIIES--------SLNVLEPAEYRKMFDRLSV----- 380
Query: 843 SVPNFEDAKMSKVYNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVC 902
F +A +P + + + W V
Sbjct: 381 ----FPP-------SAHIPTIL---LSLI----------------------WFDVIKSDV 404
Query: 903 ERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDHFRVHFRYEIE 962
V K L E +S+ + + ++ Y +
Sbjct: 405 M----------------VVVNKLHKYSLV--EKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 963 KSPLAH-NACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREILF 1016
+S + H N K + + Q H LK IE ER LF
Sbjct: 447 RSIVDHYNIPKT-------FDSDDLIPPYLDQYFYSHIGHHLKN-IEHPERMTLF 493
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 6e-09
Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 5 RLYVYVLQGQDLLAK-DSYVKVQIGKHKSKSRILKNNSNPV-WNEEFVFRVHN--IDDEE 60
L V++ +L + D KV SR+L+N + ++E F + V + +E
Sbjct: 22 ALIVHLKTVSELRGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEV 81
Query: 61 LVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDN 97
L + +F ++ S +L+G R+ + + E+
Sbjct: 82 LEIQIFNYSK-----VFSNKLIGTFRMVLQKVVEENR 113
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 53.5 bits (127), Expect = 3e-07
Identities = 24/206 (11%), Positives = 57/206 (27%), Gaps = 13/206 (6%)
Query: 2 VSTRLYVYVLQGQDLLAKDS-YVKVQI-GKHKSKSRILK---NNSNPVWNEEFVFRVHNI 56
V L +++++ ++L K Y ++ + +++ + W E F F
Sbjct: 9 VDNVLKLWIIEARELPPKKRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA 68
Query: 57 DDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFT 116
+ + +G V VPV+++ W+ + P +
Sbjct: 69 VRALRLHLYRDSDKKRK--KDKAGYVGLVTVPVATL---AGRHFTEQWYPVTLPTGSGGS 123
Query: 117 NKDCGKILLTISLNGKGHNLSSNRLLYLHSNVSSNESKELEDPCVLSHDVSCSK---APC 173
G + L + + +E + V+
Sbjct: 124 GGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILPMELYKEFAEYVTNHYRMLCAV 183
Query: 174 LDVTEGNHLMKAMVSHLEKIFNKNDQ 199
L+ + + S L I +
Sbjct: 184 LEPALNVKGKEEVASALVHILQSTGK 209
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 43.1 bits (100), Expect = 4e-04
Identities = 18/167 (10%), Positives = 41/167 (24%), Gaps = 12/167 (7%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG----KTRTSSVQLQTCDPQWHDILEFDAM 592
VL + ++E L Y + +T + W + EF+ +
Sbjct: 12 VLKLWIIEARELPPK-----KRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNL 66
Query: 593 EEPPSVLDVEVFDFDGP--FDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKV 650
++ D D D+A +G + + W + +
Sbjct: 67 PAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGM 126
Query: 651 HLRIFLENNNGVETIKEYLTKMEKEVGKKLNLRSPHRNSTFQKLFAL 697
+ G K + + S +++
Sbjct: 127 GSGGGGGSGGG-SGGKGKGGCPAVRLKARYQTMSILPMELYKEFAEY 172
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} Length = 138 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 3e-04
Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 15/109 (13%)
Query: 556 LSDPYVVF----TCNGKTRTSSVQLQ-TCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPF 610
+PY + +Q + T P W FDA V+ + V +
Sbjct: 31 AVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDS--TFDAHINKGRVMQIIVKGKNVDL 88
Query: 611 DQATSLGHAEINFLKHTSTELADMWVSLE--GKLAQSAQSKVHLRIFLE 657
T++ + + ++W+ L+ G++ ++ R FLE
Sbjct: 89 ISETTVELYSLAERCRKNNGKTEIWLELKPQGRM------LMNARYFLE 131
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1024 | ||||
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 4e-15 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 2e-11 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 8e-15 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 1e-07 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 6e-13 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 6e-05 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 2e-12 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 5e-12 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 4e-12 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 1e-08 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 1e-11 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 1e-06 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 3e-11 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 0.001 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 5e-11 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 0.004 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 1e-10 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 3e-09 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 2e-10 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 3e-10 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 4e-10 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 8e-10 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 4e-10 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 6e-05 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 7e-10 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 2e-07 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 1e-09 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 9e-07 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 2e-09 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 6e-09 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 4e-09 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 0.001 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 3e-08 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 8e-07 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 9e-05 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 2e-06 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 1e-04 |
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.5 bits (172), Expect = 4e-15
Identities = 23/118 (19%), Positives = 53/118 (44%), Gaps = 21/118 (17%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRV 53
+L V +L +DL +++ YVK+ K+K +++ +K P WN+ F++
Sbjct: 15 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSP 74
Query: 54 ---HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108
+ L ++++ D + + E +G + + + + +D P W+ L+
Sbjct: 75 VHRREFRERMLEITLW---DQARVREEESEFLGEILIELETALLDD----EPHWYKLQ 125
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.1 bits (145), Expect = 2e-11
Identities = 21/111 (18%), Positives = 43/111 (38%), Gaps = 10/111 (9%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFT-----CNGKTRTSSVQLQTCDPQWHDILEFDA- 591
L V ++ +L S E +PYV + R + +T +P+W+ +
Sbjct: 16 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 75
Query: 592 --MEEPPSVLDVEVFDFDG-PFDQATSLGHAEINFLKHTSTELADMWVSLE 639
E +L++ ++D +++ LG I L+ + W L+
Sbjct: 76 HRREFRERMLEITLWDQARVREEESEFLGEILIE-LETALLDDEPHWYKLQ 125
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 69.8 bits (170), Expect = 8e-15
Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 19/134 (14%)
Query: 6 LYVYVLQGQDLLAKDS---YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELV 62
L V V + + A++ YV +++ KS + ++ + P W ++F+F ++ +D V
Sbjct: 4 LCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVRGS-QPSWEQDFMFEINRLDLGLTV 62
Query: 63 VSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGK 122
V+ +G V +P+ +I + P W +L++ +
Sbjct: 63 E-VWNKGLIWDTM------VGTVWIPLRTIRQSN-EEGPGEWLTLDSQ-----AIMADSE 109
Query: 123 ILLTISLNGKGHNL 136
I T + H +
Sbjct: 110 ICGT--KDPTFHRI 121
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.7 bits (118), Expect = 1e-07
Identities = 15/105 (14%), Positives = 41/105 (39%), Gaps = 5/105 (4%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPP 596
+L V + + + + YV +++++ ++ P W F+ +
Sbjct: 3 LLCVGVKKAKFDGA---QEKFNTYVTLKV-QNVKSTTIAVRGSQPSWEQDFMFE-INRLD 57
Query: 597 SVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641
L VEV++ +D + ++ ++ E W++L+ +
Sbjct: 58 LGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQ 102
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 64.7 bits (157), Expect = 6e-13
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 19/114 (16%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQIGKH-----KSKSRILKNNSNPVWNEEFVFRV 53
L V VL+ + L D YVKV + K K+ + K N V+NE FVF +
Sbjct: 16 TLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDI 75
Query: 54 HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107
EE+ V + + GS E++GR+ + ++ + H W +
Sbjct: 76 PCESLEEISVEFLVLDSER---GSRNEVIGRLVLGATAEGSGGGH-----WKEI 121
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.6 bits (97), Expect = 6e-05
Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAM 592
LTV +++ +L S+++GLSDPYV + + V+ T + ++++ FD
Sbjct: 17 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 76
Query: 593 EE--PPSVLDVEVFDFDGPFDQATSLGHAEIN 622
E ++ V D + + +G +
Sbjct: 77 CESLEEISVEFLVLDSER-GSRNEVIGRLVLG 107
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 62.8 bits (152), Expect = 2e-12
Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 9/126 (7%)
Query: 522 RKGSDHGVKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQL 576
R+G + ++A D VL V + + NL + GLSDPYV + +
Sbjct: 2 RRGRIY-IQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK 60
Query: 577 QTCDPQWHDILEFDAME-EPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMW 635
+ +P+W++ F E + L VE++D+D + +G + D W
Sbjct: 61 CSLNPEWNETFRFQLKESDKDRRLSVEIWDWD-LTSRNDFMGSLSFG-ISELQKAGVDGW 118
Query: 636 VSLEGK 641
L +
Sbjct: 119 FKLLSQ 124
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 62.0 bits (150), Expect = 5e-12
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 21/125 (16%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRV 53
L V V ++L+ D YVK+++ + K K++ +K + NP WNE F F++
Sbjct: 16 VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 75
Query: 54 HNID-DEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKT 112
D D L V ++ + S + MG + +S + WF L + +
Sbjct: 76 KESDKDRRLSVEIWDWD-----LTSRNDFMGSLSFGISELQKAG----VDGWFKLLSQEE 126
Query: 113 RKFTN 117
++ N
Sbjct: 127 GEYFN 131
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 62.5 bits (151), Expect = 4e-12
Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 21/131 (16%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSR-ILKNNSNPVWNEEFVFRVHNID 57
L V ++ + L D YV++ KS + P WNE F+F V
Sbjct: 11 TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE-G 69
Query: 58 DEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTN 117
EL +F + G+ + +G +P+ + E + +PPT +++ +
Sbjct: 70 TTELKAKIFDKDV-----GTEDDAVGEATIPLEPVFVEGS--IPPTAYNVVKDE------ 116
Query: 118 KDCGKILLTIS 128
+ G+I + +S
Sbjct: 117 EYKGEIWVALS 127
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 52.8 bits (126), Expect = 1e-08
Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 6/120 (5%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFT-CNGKTRTSSVQLQTCDPQWHDILEFDAMEEP 595
L V LV L ++ DPYV T +++ + P+W++ F + E
Sbjct: 11 TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFT-VSEG 69
Query: 596 PSVLDVEVFDFDGPFDQATSLGHAEINFLK-HTSTELADMWVSLEGKLAQSAQSKVHLRI 654
+ L ++FD D + ++G A I + ++ + + ++ + +
Sbjct: 70 TTELKAKIFDKDV-GTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKD--EEYKGEIWVAL 126
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.5 bits (146), Expect = 1e-11
Identities = 25/134 (18%), Positives = 48/134 (35%), Gaps = 16/134 (11%)
Query: 4 TRLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNID 57
++L + V+ + K + YV+V + K+ N ++P W + V +
Sbjct: 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVS 65
Query: 58 DEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTN 117
V+ H S L+G + + +N L +L+ K
Sbjct: 66 KL--HFRVWSHQT-----LKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQ-LGGDKEPT 117
Query: 118 KDCGKILLTISLNG 131
+ G L+I L+G
Sbjct: 118 ETIGD--LSICLDG 129
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (109), Expect = 1e-06
Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 7/124 (5%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPS 597
L + ++ + + PYV T +G+++ + T P+W L
Sbjct: 8 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVSKL 67
Query: 598 VLDVEVFDFDGPFDQATSLGHAEIN---FLKHTSTELADMWVSLEGKLAQSAQSKV-HLR 653
V+ LG A ++ LK + +L ++ V+L+ + + L
Sbjct: 68 HF--RVWSHQT-LKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLS 124
Query: 654 IFLE 657
I L+
Sbjct: 125 ICLD 128
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.8 bits (144), Expect = 3e-11
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 19/121 (15%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRV 53
L V +++ L A D+ +VK+ + K K K++I K NP +NEEF + +
Sbjct: 16 GLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDI 75
Query: 54 HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTR 113
+ D + + + + D G S + +G ++ +S+ H W+ K +
Sbjct: 76 KHSDLAKKSLDISVWDYDI---GKSNDYIGGCQLGISAKGERLKH-----WYECLKNKDK 127
Query: 114 K 114
K
Sbjct: 128 K 128
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.9 bits (87), Expect = 0.001
Identities = 14/76 (18%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDA 591
L V ++ V+LA+ + G SDP+V + ++ +T +P++++ +D
Sbjct: 16 GLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDI 75
Query: 592 MEEPPSVLDVEVFDFD 607
+ +++ +D
Sbjct: 76 KHSDLAKKSLDISVWD 91
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.0 bits (142), Expect = 5e-11
Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 15/112 (13%)
Query: 553 MTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFD 607
S P+ + +T + T P+W + V+ + +
Sbjct: 20 EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHI--YEGRVIQIVLMRAA 77
Query: 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLE--GKLAQSAQSKVHLRIFLE 657
++G + + + A+ W+ L+ K+ + ++ FLE
Sbjct: 78 EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQPQAKV------LMCVQYFLE 123
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.3 bits (83), Expect = 0.004
Identities = 16/117 (13%), Positives = 30/117 (25%), Gaps = 28/117 (23%)
Query: 20 DSYVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGL 74
+ V++ K P W F ++ ++V+ +
Sbjct: 25 QPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRVIQIVLMRAAEDP---- 80
Query: 75 FGSSGELMGRVRVPVSSIAAEDNH--MLPPTWFSLETPKTRKFTNKDCGKILLTISL 129
M V V VS +A W L+ K+L+ +
Sbjct: 81 -------MSEVTVGVSVLAERCKKNNGKAEFWLDLQPQ----------AKVLMCVQY 120
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.2 bits (140), Expect = 1e-10
Identities = 27/114 (23%), Positives = 55/114 (48%), Gaps = 15/114 (13%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRVHN 55
+L V ++Q +L A D YVKV + K K ++++ + NPV+NE+F F+V
Sbjct: 35 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 94
Query: 56 IDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109
+ + + ++ D S +++G +VP++++ W L++
Sbjct: 95 SELGGKTLVMAVYDFDR---FSKHDIIGEFKVPMNTVDFGHVT---EEWRDLQS 142
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 54.4 bits (130), Expect = 3e-09
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVF---TCNGKTRTSSVQLQTCDPQWHDILEFD--AM 592
L V +++ L + +M G SDPYV K + V +T +P +++ F
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 593 EEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639
E L + V+DFD F + +G ++ + + W L+
Sbjct: 96 ELGGKTLVMAVYDFD-RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (138), Expect = 2e-10
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 20/130 (15%)
Query: 6 LYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDE 59
L V VL+ DLLA D + +++G + ++ + N NP WN+ F F + +I D
Sbjct: 8 LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDV 67
Query: 60 ELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKD 119
V VF + + +G+V +P+ SI P + L K +
Sbjct: 68 LEVT-VFDED-----GDKPPDFLGKVAIPLLSIRDG-----QPNCYVL---KNKDLEQAF 113
Query: 120 CGKILLTISL 129
G I L + L
Sbjct: 114 KGVIYLEMDL 123
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.7 bits (136), Expect = 3e-10
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 5/124 (4%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPP 596
+L V +++ +L +++ +G SDP+ + + + +P+W+ + F +
Sbjct: 7 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIK-DIH 65
Query: 597 SVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQS-KVHLRIF 655
VL+V VFD DG LG I L + L+ K + A ++L +
Sbjct: 66 DVLEVTVFDEDG-DKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMD 122
Query: 656 LENN 659
L N
Sbjct: 123 LIYN 126
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.3 bits (135), Expect = 4e-10
Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 14/126 (11%)
Query: 538 LTVALVEGVNL---ASSEMTGLSDPYVVFTCNG---KTRTSSVQLQTCDPQWHDILEFDA 591
TV ++ + A +M DPYV + + + +P W++ EF
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 592 MEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVH 651
+VL++ + D + D+ +LG A E ++ +++
Sbjct: 65 DPNQENVLEITLMDANYVMDE--TLGTATFTVSSMKVGEKKEVPFIFNQV------TEMV 116
Query: 652 LRIFLE 657
L + LE
Sbjct: 117 LEMSLE 122
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.5 bits (133), Expect = 8e-10
Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 21/121 (17%)
Query: 3 STRLYVYVLQGQDLLAK---------DSYVKVQIGK---HKSKSRILKNNSNPVWNEEFV 50
S + V VL+ + D YV++ I + ++R N+ NPVWNE F
Sbjct: 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFE 61
Query: 51 FRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
F + + L +++ N E +G VSS+ + + F
Sbjct: 62 FILDPNQENVLEITLMDAN------YVMDETLGTATFTVSSMKVGEKKEV---PFIFNQV 112
Query: 111 K 111
Sbjct: 113 T 113
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 57.1 bits (137), Expect = 4e-10
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 23/127 (18%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQIGKHKS-----KSRILKNNSNPVWNEEFVFRV 53
+L V +L+ ++L D YVK+ + ++ K+ I KN NP +NE F F V
Sbjct: 26 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 85
Query: 54 HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNH---MLP------PTW 104
+++ V V + D + +G+V V +S AE H ML W
Sbjct: 86 PFEQIQKVQVVVTVLDYDK---IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQW 142
Query: 105 FSLETPK 111
+L+ +
Sbjct: 143 HTLQVEE 149
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.1 bits (98), Expect = 6e-05
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 20/124 (16%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTC-----NGKTRTSSVQLQTCDPQWHDILEFDA 591
LTV ++E NL ++ GLSDPYV K + ++++ T +P +++ F+
Sbjct: 26 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 85
Query: 592 MEE--PPSVLDVEVFDFDGPFDQATSLGHAEINF------LKHTSTELA------DMWVS 637
E + V V D+D + ++G + + L+H S LA W +
Sbjct: 86 PFEQIQKVQVVVTVLDYD-KIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHT 144
Query: 638 LEGK 641
L+ +
Sbjct: 145 LQVE 148
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.9 bits (134), Expect = 7e-10
Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 9/125 (7%)
Query: 538 LTVALVEGVNLASSEM--TGLSDPYVVFTCNG------KTRTSSVQLQTCDPQWHDILEF 589
L V ++ G L + DP V+ +G +T+ + +P+W EF
Sbjct: 6 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65
Query: 590 DAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSK 649
+ +++ V D+D + +G + I + +S G SA
Sbjct: 66 EVTVPDLALVRFMVEDYD-SSSKNDFIGQSTIPWNSLKQGYRHVHLLSKNGDQHPSATLF 124
Query: 650 VHLRI 654
V + I
Sbjct: 125 VKISI 129
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.0 bits (116), Expect = 2e-07
Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 28/140 (20%)
Query: 4 TRLYVYVLQGQDLLAK--------DSYVKVQIG------KHKSKSRILKNNSNPVWNEEF 49
RL V ++ GQ L D V V+I + + I N NP W+ EF
Sbjct: 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEF 63
Query: 50 VFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109
F V D + V ++ S + +G+ +P ++ L +
Sbjct: 64 EFEVTVPDLALVRFMVEDYD-----SSSKNDFIGQSTIPW------NSLKQGYRHVHLLS 112
Query: 110 PKTRKFTNKDCGKILLTISL 129
+ + + IS+
Sbjct: 113 KNGDQHP---SATLFVKISI 129
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.7 bits (133), Expect = 1e-09
Identities = 27/127 (21%), Positives = 62/127 (48%), Gaps = 31/127 (24%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQI--------------GKHKSKSRILKNNSNPV 44
L +++LQ ++L+ +D+ +VKV + ++K +++ ++ + NP
Sbjct: 19 NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPE 78
Query: 45 WNEEFVFRV---HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLP 101
WN+ +++ + + L V+V+ ++ SS + +G V + +SS + DN
Sbjct: 79 WNQTVIYKSISMEQLMKKTLEVTVWDYD-----RFSSNDFLGEVLIDLSSTSHLDNT--- 130
Query: 102 PTWFSLE 108
P W+ L+
Sbjct: 131 PRWYPLK 137
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.2 bits (111), Expect = 9e-07
Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 20/123 (16%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG---------------KTRTSSVQLQTCDP 581
L + +++ NL + G SDP+V K RT VQ ++ +P
Sbjct: 19 NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ-KSLNP 77
Query: 582 QWHDILEF---DAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSL 638
+W+ + + + L+V V+D+D F LG I+ + + W L
Sbjct: 78 EWNQTVIYKSISMEQLMKKTLEVTVWDYD-RFSSNDFLGEVLIDLSSTSHLDNTPRWYPL 136
Query: 639 EGK 641
+ +
Sbjct: 137 KEQ 139
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 54.5 bits (130), Expect = 2e-09
Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 23/139 (16%)
Query: 537 VLTVALVEGVNL-----------ASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWH 584
+L + + E V+L T L DPY+ + + ++ + +T P WH
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 585 DILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINF--LKHTSTELADMWVSLEGKL 642
D D L V G D + I F L + + W+ LE
Sbjct: 67 DEFVTDVCNGRKIELAVFHDAPIGYDDFV---ANCTIQFEELLQNGSRHFEDWIDLEP-- 121
Query: 643 AQSAQSKVHLRIFLENNNG 661
+ KV++ I L ++G
Sbjct: 122 ----EGKVYVIIDLSGSSG 136
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 53.4 bits (127), Expect = 6e-09
Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 36/150 (24%)
Query: 1 MVSTRLYVYVLQGQDLLAK-----------------DSYVKVQIGKHK-SKSRILKNNSN 42
+ + L + + + L D Y+ + + + ++ + ++
Sbjct: 3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNS 62
Query: 43 PVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPP 102
P W++EFV V N EL VF + + + + +
Sbjct: 63 PAWHDEFVTDVCNGRKIELA--VFHDAP-----IGYDDFVANCTIQFEELLQNGSRHF-E 114
Query: 103 TWFSLETPKTRKFTNKDCGKILLTISLNGK 132
W LE GK+ + I L+G
Sbjct: 115 DWIDLE----------PEGKVYVIIDLSGS 134
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.0 bits (129), Expect = 4e-09
Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 22/120 (18%)
Query: 5 RLYVYVLQGQDLLAKDS-------YVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRVH 54
V + + + L A D Y+K+ I KHK K+R+L+ +P ++E F F
Sbjct: 23 AFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGI 82
Query: 55 NIDD---EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPK 111
L ++ F +++G V +P+S I + M + E
Sbjct: 83 PYTQIQELALHFTIL----SFDRFSRD-DIIGEVLIPLSGIELSEGKM----LMNREIIS 133
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (88), Expect = 0.001
Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 9/110 (8%)
Query: 537 VLTVALVEGVNL-ASSEMTGLSDPYVVFTCNG---KTRTSSVQLQTCDPQWHDILEFDAM 592
V + E L A E + SDPY+ T + V +T DP + + F +
Sbjct: 23 AFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGI 82
Query: 593 ---EEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639
+ L + FD F + +G I L M ++ E
Sbjct: 83 PYTQIQELALHFTILSFD-RFSRDDIIGEVLIP-LSGIELSEGKMLMNRE 130
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.1 bits (122), Expect = 3e-08
Identities = 23/108 (21%), Positives = 50/108 (46%), Gaps = 21/108 (19%)
Query: 4 TRLYVYVLQGQDLLAK--DSYVKVQIG--------KHKSKSRILKNNSNPVWNEE--FVF 51
T L + V+ GQ L + +YV+V++ ++++K N+ NPVW EE
Sbjct: 1 TTLSITVISGQFLSERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFE 60
Query: 52 RVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHM 99
++ + L V+V + + +G +P++++ + +H+
Sbjct: 61 KILMPELASLRVAVMEEGNK---------FLGHRIIPINALNSGYHHL 99
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.2 bits (111), Expect = 8e-07
Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 13/114 (11%)
Query: 5 RLYVYVLQGQDLLAK---DSYVKVQI----GKHKSKSRILKNNSNPVWNEEFVFRVHNID 57
L+V L+ D YV+ + G ++++ + K + W E V + +
Sbjct: 27 ELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEE 86
Query: 58 DEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPK 111
+++ D S + G +R+ + + W L+T
Sbjct: 87 LPTATLTLTLRTCDR---FSRHSVAGELRLGLDGTSVPLGA---AQWGELKTSG 134
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (96), Expect = 9e-05
Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 8/109 (7%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGK----TRTSSVQLQTCDPQWHDILEFDAME 593
L V +E V G D YV + + ++++ + W + L E
Sbjct: 28 LFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAE 84
Query: 594 EPPSVLDVEVFDFD-GPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641
E + + F + + G + + A W L+
Sbjct: 85 EELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS 133
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.3 bits (109), Expect = 2e-06
Identities = 32/128 (25%), Positives = 46/128 (35%), Gaps = 24/128 (18%)
Query: 5 RLYVYVLQGQDLLAKDS------YVKVQIGKH-----KSKSRILKNNSNPVWNEEFVFRV 53
L V +++ +L A D YVK + K K+ I KN NP +NE VF V
Sbjct: 21 LLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDV 80
Query: 54 HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAED----NHMLPPT------ 103
E + +S+ + D E++G RV + ML
Sbjct: 81 APESVENVGLSIAVVDYDC---IGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEH 137
Query: 104 WFSLETPK 111
W L K
Sbjct: 138 WHQLVEEK 145
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.3 bits (96), Expect = 1e-04
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFD- 590
+LTV +++ NL + ++TG SDPYV + K R +S++ T +P +++ L FD
Sbjct: 21 LLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDV 80
Query: 591 -AMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSL 638
L + V D+D +G + + + W +
Sbjct: 81 APESVENVGLSIAVVDYDC-IGHNEVIGVCRVG-PEAADPHGREHWAEM 127
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1024 | |||
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.93 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.91 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.9 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.9 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.89 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.88 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.88 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.88 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.87 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.87 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.87 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.87 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.87 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.86 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.84 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.84 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.84 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.83 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.82 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.82 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.81 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.81 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.81 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.8 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.79 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.79 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.79 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.78 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.78 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.77 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.76 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.75 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.74 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.73 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.72 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.7 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.68 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.66 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.59 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.57 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 96.9 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 94.78 | |
| d2caya1 | 130 | Vacuolar protein sorting protein 36, VPS36 {Baker' | 89.43 | |
| d1jssa_ | 199 | Cholesterol-regulated Start protein 4 (Stard4). {M | 84.9 | |
| d1em2a_ | 214 | Lipid transport domain of Mln64 {Human (Homo sapie | 81.96 | |
| d2hthb1 | 129 | Vacuolar protein sorting protein 36, VPS36 {Human | 80.67 |
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2e-25 Score=160.27 Aligned_cols=120 Identities=23% Similarity=0.406 Sum_probs=105.9
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCC
Q ss_conf 88099999999427999998898982999999897985100159999968589899743599983999999627999988
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 613 (1024)
Q Consensus 534 ~~~~l~V~vi~a~~L~~~d~~g~~DPyv~i~~~~~~~kT~~~~~t~nP~Wne~f~f~~~~~~~~~l~i~V~D~d~~~~~d 613 (1024)
+.|+|+|+|++|+||+++|.+|++||||++++++++++|+++++|.||+|||.|.|. ...+...|.|+|||+|. +++|
T Consensus 4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~-v~~~~~~L~i~V~d~~~-~~~d 81 (126)
T d2ep6a1 4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFP-IKDIHDVLEVTVFDEDG-DKPP 81 (126)
T ss_dssp CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEE-ESCTTCEEEEEEEEEET-TEEE
T ss_pred CCEEEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEEEEECCCEEEEEEEEEEEE-EECCCCEEEEEEEECCC-CCCC
T ss_conf 619999999982789887889996959999769858877740774057898999999-84367500899999369-8476
Q ss_pred CCCEEEEEECCCCCCCCCCCEEEECCCCCC-CCCCCEEEEEEEEE
Q ss_conf 521599999202568774105998556555-66541269999972
Q 001703 614 TSLGHAEINFLKHTSTELADMWVSLEGKLA-QSAQSKVHLRIFLE 657 (1024)
Q Consensus 614 d~iG~~~i~l~~l~~~~~~~~w~~L~~~~~-~~~~g~l~l~i~~~ 657 (1024)
++||++.++|..+..+. ..|+.|..... ....|+|+|++.+.
T Consensus 82 ~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~i 124 (126)
T d2ep6a1 82 DFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLI 124 (126)
T ss_dssp EECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred CEEEEEEEEHHHCCCCC--CEEEECCCCCCCCCEEEEEEEEEEEE
T ss_conf 25899999989988999--64998415489975429999999999
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.91 E-value=2.5e-23 Score=148.16 Aligned_cols=119 Identities=23% Similarity=0.377 Sum_probs=102.3
Q ss_pred CCEEEEEEEEEEECCCCCC-----------CCCCCCCEEEEEECCEE-EEEECCCCCCCCEEEEEEEEEEECCCCCEEEE
Q ss_conf 8809999999942799999-----------88989829999998979-85100159999968589899743599983999
Q 001703 534 DGWVLTVALVEGVNLASSE-----------MTGLSDPYVVFTCNGKT-RTSSVQLQTCDPQWHDILEFDAMEEPPSVLDV 601 (1024)
Q Consensus 534 ~~~~l~V~vi~a~~L~~~d-----------~~g~~DPyv~i~~~~~~-~kT~~~~~t~nP~Wne~f~f~~~~~~~~~l~i 601 (1024)
..|+|+|+|++|++|++.+ ..+.+||||+++++++. .+|++++++.||.|||.|.|++.. ...|.|
T Consensus 4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~--~~~l~i 81 (136)
T d1gmia_ 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN--GRKIEL 81 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEEE
T ss_pred EEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEEC--CCCEEE
T ss_conf 789999999994799865344433324567888758379999189867670588498895396379999932--784599
Q ss_pred EEEECCCCCCCCCCCEEEEEECCCCCCC--CCCCEEEECCCCCCCCCCCEEEEEEEEECCCC
Q ss_conf 9996279999885215999992025687--74105998556555665412699999721688
Q 001703 602 EVFDFDGPFDQATSLGHAEINFLKHTST--ELADMWVSLEGKLAQSAQSKVHLRIFLENNNG 661 (1024)
Q Consensus 602 ~V~D~d~~~~~dd~iG~~~i~l~~l~~~--~~~~~w~~L~~~~~~~~~g~l~l~i~~~~~~~ 661 (1024)
+|||+|. +++|++||++.|+|.++... ...+.|++|++ +|++++++.+..+.|
T Consensus 82 ~V~d~~~-~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p------~G~v~l~v~~~~~~g 136 (136)
T d1gmia_ 82 AVFHDAP-IGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP------EGKVYVIIDLSGSSG 136 (136)
T ss_dssp EEEECCS-SSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS------SCEEEEEEEEEEEEC
T ss_pred EEEEECC-CCCCEEEEEEEEEHHHHHHCCCCCEEEEEECCC------CCEEEEEEEEEECCC
T ss_conf 9999668-987405789999979953168962248996778------829999999990799
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.90 E-value=2.6e-23 Score=148.08 Aligned_cols=122 Identities=20% Similarity=0.324 Sum_probs=103.0
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEECCC-CCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCC
Q ss_conf 88809999999942799999889898299999989798510015-99999685898997435999839999996279999
Q 001703 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQL-QTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFD 611 (1024)
Q Consensus 533 ~~~~~l~V~vi~a~~L~~~d~~g~~DPyv~i~~~~~~~kT~~~~-~t~nP~Wne~f~f~~~~~~~~~l~i~V~D~d~~~~ 611 (1024)
+..|+|+|+|++|++|+..|..|++||||+++++++.++|++++ +++||+|||+|.|.+. .....|.|+|||+|. ++
T Consensus 7 ~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~-~~~~~L~v~V~d~d~-~~ 84 (136)
T d1wfja_ 7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVS-EGTTELKAKIFDKDV-GT 84 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEE-SSCCEEEEEECCSSS-CT
T ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCEEEEEEEEEEEC-CCCCEEEEEEEEECC-CC
T ss_conf 9938999999995689898889997932899994553788899668872887069999973-831157999999569-99
Q ss_pred CCCCCEEEEEECCCCCC-CCCCCEEEECCCCCCCCCCCEEEEEEEEEC
Q ss_conf 88521599999202568-774105998556555665412699999721
Q 001703 612 QATSLGHAEINFLKHTS-TELADMWVSLEGKLAQSAQSKVHLRIFLEN 658 (1024)
Q Consensus 612 ~dd~iG~~~i~l~~l~~-~~~~~~w~~L~~~~~~~~~g~l~l~i~~~~ 658 (1024)
+|++||++.|+|.++.. +.....|++|.... ...|+|+|.+.+..
T Consensus 85 ~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~--~~~G~i~l~l~~~p 130 (136)
T d1wfja_ 85 EDDAVGEATIPLEPVFVEGSIPPTAYNVVKDE--EYKGEIWVALSFKP 130 (136)
T ss_dssp TTCCSEEEEEESHHHHHHSEEEEEEEEEEETT--EEEEEEEEEEEEEE
T ss_pred CCCEEEEEEEEHHHHCCCCCCCCEEEEECCCC--CCCEEEEEEEEEEE
T ss_conf 99889999999387112698673787864799--45789999999984
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.9e-23 Score=147.76 Aligned_cols=116 Identities=16% Similarity=0.270 Sum_probs=98.1
Q ss_pred CEEEEEEEEEEECCCCC---CCCCCCCCEEEEEECC---EEEEEECCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCC
Q ss_conf 80999999994279999---9889898299999989---79851001599999685898997435999839999996279
Q 001703 535 GWVLTVALVEGVNLASS---EMTGLSDPYVVFTCNG---KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDG 608 (1024)
Q Consensus 535 ~~~l~V~vi~a~~L~~~---d~~g~~DPyv~i~~~~---~~~kT~~~~~t~nP~Wne~f~f~~~~~~~~~l~i~V~D~d~ 608 (1024)
.+.|+|+|++|+||+.. |..|++||||++.+++ ++++|++++++.||.|||+|.|.+.......|.|+|||+|.
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~ 81 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCEECEEEEECCCCCCCCCEEEEEEECCC
T ss_conf 71899999986089886366668897818999997734611676404788650101145010458412717999998799
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEEE
Q ss_conf 999885215999992025687741059985565556654126999997
Q 001703 609 PFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFL 656 (1024)
Q Consensus 609 ~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~i~~ 656 (1024)
.+|++||++.++|..+..+...+.||+|.+ ..+|.|++.+++
T Consensus 82 --~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~----~~~g~i~~~l~~ 123 (126)
T d1rlwa_ 82 --VMDETLGTATFTVSSMKVGEKKEVPFIFNQ----VTEMVLEMSLEV 123 (126)
T ss_dssp --SCCEEEEEEEEEGGGSCTTCEEEEEEEETT----TEEEEEEEEEEC
T ss_pred --CCCCEEEEEEEEHHHCCCCCEEEEEEECCC----CCEEEEEEEEEE
T ss_conf --789748999999888659983889998348----980899999999
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=7.2e-23 Score=145.50 Aligned_cols=115 Identities=29% Similarity=0.495 Sum_probs=99.1
Q ss_pred CCEEEEEEEEEECCC------CCCCEEEEEECCEEEEEECCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCCC
Q ss_conf 848999999822189------99949999998938761061589999594499999844999759999995388999889
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~dpyv~i~l~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~i~V~d~d~~~~f~~ 76 (1024)
.|.|+|+|++|++|+ .+||||++++++++++|++++++.||+|||+|.|.+. .....|.|+|||++ . .
T Consensus 5 ~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~-~~~~~L~i~V~d~~---~--~ 78 (126)
T d2ep6a1 5 VGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIK-DIHDVLEVTVFDED---G--D 78 (126)
T ss_dssp SEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEES-CTTCEEEEEEEEEE---T--T
T ss_pred CEEEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEEEEECCCEEEEEEEEEEEEEE-CCCCEEEEEEEECC---C--C
T ss_conf 1999999998278988788999695999976985887774077405789899999984-36750089999936---9--8
Q ss_pred CCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 8897129899868643343788899778983338777989963419999999991
Q 001703 77 SSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (1024)
Q Consensus 77 ~~d~~lG~~~i~l~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~l~l~~~~ 131 (1024)
++|++||++.+++.++..+ ...|+.|. .+..+ ....|+|+|++.+..
T Consensus 79 ~~d~~lG~~~i~l~~l~~~-----~~~~~~l~-~~~~~--~~~~G~i~l~~~~i~ 125 (126)
T d2ep6a1 79 KPPDFLGKVAIPLLSIRDG-----QPNCYVLK-NKDLE--QAFKGVIYLEMDLIY 125 (126)
T ss_dssp EEEEECCBCEEEGGGCCSS-----CCEECCCB-CSCTT--SCCSSEEEEEEEEEE
T ss_pred CCCCEEEEEEEEHHHCCCC-----CCEEEECC-CCCCC--CCEEEEEEEEEEEEE
T ss_conf 4762589999998998899-----96499841-54899--754299999999997
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.88 E-value=2e-22 Score=143.01 Aligned_cols=106 Identities=25% Similarity=0.416 Sum_probs=92.9
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEE-----CCEEEEEECCCCCCCCEEEEEEEEEEECC-CCCEEEEEEEEC
Q ss_conf 888099999999427999998898982999999-----89798510015999996858989974359-998399999962
Q 001703 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTC-----NGKTRTSSVQLQTCDPQWHDILEFDAMEE-PPSVLDVEVFDF 606 (1024)
Q Consensus 533 ~~~~~l~V~vi~a~~L~~~d~~g~~DPyv~i~~-----~~~~~kT~~~~~t~nP~Wne~f~f~~~~~-~~~~l~i~V~D~ 606 (1024)
...+.|.|+|++|+||+++|.+|.+||||++++ +..+++|+++++|.||+|||.|.|.+... ....|.|+|||+
T Consensus 12 ~~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~ 91 (132)
T d1a25a_ 12 IDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDW 91 (132)
T ss_dssp ESSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEEC
T ss_pred ECCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCEEEEEEEEC
T ss_conf 54999999998554998878998969089999826788866408841658899845549999957645697876997806
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCC
Q ss_conf 7999988521599999202568774105998556
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 607 d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
|. +++|++||++.|+|..+..+. .+.||+|.+
T Consensus 92 d~-~~~d~~iG~~~i~l~~l~~~~-~~~W~~L~~ 123 (132)
T d1a25a_ 92 DL-TSRNDFMGSLSFGISELQKAG-VDGWFKLLS 123 (132)
T ss_dssp CS-SSCCEEEEEEEEEHHHHTTCC-EEEEEECBC
T ss_pred CC-CCCCCEEEEEEEEHHHCCCCC-CCEEEECCC
T ss_conf 77-888967699999689948887-882899978
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=7.2e-22 Score=139.75 Aligned_cols=117 Identities=18% Similarity=0.281 Sum_probs=94.9
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 09999999942799999889898299999989798510015999996858989974359998399999962799998852
Q 001703 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (1024)
Q Consensus 536 ~~l~V~vi~a~~L~~~d~~g~~DPyv~i~~~~~~~kT~~~~~t~nP~Wne~f~f~~~~~~~~~l~i~V~D~d~~~~~dd~ 615 (1024)
+.|.|+|++|++++..+..+.+||||++.++++.++|++++++.||+|||.|.|.+. +...|.|+|||+|. +++|++
T Consensus 6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~--~~~~l~~~V~d~d~-~~~d~~ 82 (133)
T d2nq3a1 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT--PVSKLHFRVWSHQT-LKSDVL 82 (133)
T ss_dssp EEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC--TTCEEEEEEEECCS-SSCCEE
T ss_pred EEEEEEEEEEECCCCCCCCCCCCEEEEEEECCEEEEEEEEEECCCEEECCEEEEEEE--ECCEEEEEEEECCC-CCCCCE
T ss_conf 389999999399976778899695999999984784379970362787656799998--02206999998268-889946
Q ss_pred CEEEEEECCCCCC---CCCCCEE--EECCC-CCCCCCCCEEEEEEE
Q ss_conf 1599999202568---7741059--98556-555665412699999
Q 001703 616 LGHAEINFLKHTS---TELADMW--VSLEG-KLAQSAQSKVHLRIF 655 (1024)
Q Consensus 616 iG~~~i~l~~l~~---~~~~~~w--~~L~~-~~~~~~~g~l~l~i~ 655 (1024)
||++.++|.++.. +.....| +.|.+ +.+....|+|.+.+.
T Consensus 83 iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~ 128 (133)
T d2nq3a1 83 LGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLD 128 (133)
T ss_dssp EEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEE
T ss_pred EEEEEEEHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEEEE
T ss_conf 8999999799341359952159999865788898327899999994
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=5.6e-22 Score=140.39 Aligned_cols=113 Identities=23% Similarity=0.377 Sum_probs=96.8
Q ss_pred CCCEEEEEEEEEECCC---------CCCCEEEEEECC---EEEEEECCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECC
Q ss_conf 8848999999822189---------999499999989---3876106158999959449999984499975999999538
Q 001703 2 VSTRLYVYVLQGQDLL---------AKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHN 69 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~---------~~dpyv~i~l~~---~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~i~V~d~d 69 (1024)
++.+|+|+|++|+||+ .+||||++++++ ++++|++++++.||.|||+|.|.+.+.....|.|+|||++
T Consensus 1 ss~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d 80 (126)
T d1rlwa_ 1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN 80 (126)
T ss_dssp CCEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECC
T ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCEECEEEEECCCCCCCCCEEEEEEECC
T ss_conf 97189999998608988636666889781899999773461167640478865010114501045841271799999879
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 89998898897129899868643343788899778983338777989963419999999991
Q 001703 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (1024)
Q Consensus 70 ~~~~f~~~~d~~lG~~~i~l~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~l~l~~~~ 131 (1024)
..+|++||++.++|.++..+ .....||+|. ....|+|++++.+.+
T Consensus 81 ------~~~d~~lG~~~i~L~~l~~~---~~~~~~~~L~--------~~~~g~i~~~l~~~~ 125 (126)
T d1rlwa_ 81 ------YVMDETLGTATFTVSSMKVG---EKKEVPFIFN--------QVTEMVLEMSLEVAS 125 (126)
T ss_dssp ------SSCCEEEEEEEEEGGGSCTT---CEEEEEEEET--------TTEEEEEEEEEECCC
T ss_pred ------CCCCCEEEEEEEEHHHCCCC---CEEEEEEECC--------CCCEEEEEEEEEEEE
T ss_conf ------97897489999998886599---8388999834--------898089999999973
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.87 E-value=1.8e-21 Score=137.48 Aligned_cols=117 Identities=19% Similarity=0.327 Sum_probs=95.8
Q ss_pred EEEEEEEEEECCCCC--CCCCCCCCEEEEEEC-----CEEEEEECCC-CCCCCEEEEEEEEEEECCCCCEEEEEEEECCC
Q ss_conf 999999994279999--988989829999998-----9798510015-99999685898997435999839999996279
Q 001703 537 VLTVALVEGVNLASS--EMTGLSDPYVVFTCN-----GKTRTSSVQL-QTCDPQWHDILEFDAMEEPPSVLDVEVFDFDG 608 (1024)
Q Consensus 537 ~l~V~vi~a~~L~~~--d~~g~~DPyv~i~~~-----~~~~kT~~~~-~t~nP~Wne~f~f~~~~~~~~~l~i~V~D~d~ 608 (1024)
.|+|+|++|++|+.. +.+|++||||++++. .++++|++++ +++||.|||+|+|.+.......|.++|||+|.
T Consensus 5 ~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d~ 84 (131)
T d1qasa2 5 RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDS 84 (131)
T ss_dssp EEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECCT
T ss_pred EEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCEEEEEEEEEEECCHHCEEEEEEEEECC
T ss_conf 99999999229997789889981869999996678885787888896665796597799999776323258999998068
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCC-CCCCEEEEEEEEE
Q ss_conf 999885215999992025687741059985565556-6541269999972
Q 001703 609 PFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQ-SAQSKVHLRIFLE 657 (1024)
Q Consensus 609 ~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~g~l~l~i~~~ 657 (1024)
+++|++||++.++|..+..+ ..|++|..+.+. ...++|.+++.+.
T Consensus 85 -~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~~~~~~~L~v~i~~~ 130 (131)
T d1qasa2 85 -SSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISIQ 130 (131)
T ss_dssp -TTCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred -CCCCCEEEEEEEEEECCCCC---CEEEECCCCCCCCCCCCEEEEEEEEE
T ss_conf -88986889999997626787---78998989995998877899999998
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.87 E-value=5.5e-22 Score=140.41 Aligned_cols=117 Identities=25% Similarity=0.501 Sum_probs=99.3
Q ss_pred CCEEEEEEEEEECCC------CCCCEEEEEECCEEEEEECCC-CCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCC
Q ss_conf 848999999822189------999499999989387610615-8999959449999984499975999999538899988
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILK-NNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLF 75 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~dpyv~i~l~~~~~kT~v~~-~t~nP~WnE~f~f~v~~~~~~~L~i~V~d~d~~~~f~ 75 (1024)
.+.|+|+|++|++|+ .+||||+++++++..+|++++ ++.||+|||+|.|.+. .....|.|+|||++ +
T Consensus 9 ~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~-~~~~~L~v~V~d~d---~-- 82 (136)
T d1wfja_ 9 HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVS-EGTTELKAKIFDKD---V-- 82 (136)
T ss_dssp EEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEE-SSCCEEEEEECCSS---S--
T ss_pred CEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCEEEEEEEEEEEC-CCCCEEEEEEEEEC---C--
T ss_conf 38999999995689898889997932899994553788899668872887069999973-83115799999956---9--
Q ss_pred CCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEEECC
Q ss_conf 9889712989986864334378889977898333877798996341999999999149
Q 001703 76 GSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKG 133 (1024)
Q Consensus 76 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~l~l~~~~~~ 133 (1024)
.++|++||++.|+|.++... ......|+.|... .+..|+|+|++.|.|..
T Consensus 83 ~~~d~~iG~~~i~L~~l~~~--~~~~~~~~~l~~~------~~~~G~i~l~l~~~p~~ 132 (136)
T d1wfja_ 83 GTEDDAVGEATIPLEPVFVE--GSIPPTAYNVVKD------EEYKGEIWVALSFKPSG 132 (136)
T ss_dssp CTTTCCSEEEEEESHHHHHH--SEEEEEEEEEEET------TEEEEEEEEEEEEEECC
T ss_pred CCCCCEEEEEEEEHHHHCCC--CCCCCEEEEECCC------CCCCEEEEEEEEEEECC
T ss_conf 99998899999993871126--9867378786479------94578999999998489
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.87 E-value=9.6e-22 Score=139.02 Aligned_cols=105 Identities=23% Similarity=0.403 Sum_probs=94.0
Q ss_pred CEEEEEEEEEEECCCCCCCCCCCCCEEEEEE---CCEEEEEECCCCCCCCEEEEEEEEEEECC--CCCEEEEEEEECCCC
Q ss_conf 8099999999427999998898982999999---89798510015999996858989974359--998399999962799
Q 001703 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTC---NGKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDGP 609 (1024)
Q Consensus 535 ~~~l~V~vi~a~~L~~~d~~g~~DPyv~i~~---~~~~~kT~~~~~t~nP~Wne~f~f~~~~~--~~~~l~i~V~D~d~~ 609 (1024)
.+.|.|+|++|+||++++..|.+||||++++ +.++++|++++++.||+|||+|.|.+... ....|.|+|||+|.
T Consensus 33 ~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~- 111 (143)
T d1rsya_ 33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR- 111 (143)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS-
T ss_pred CCEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEEEEEEEEEEEECCCCCEEEEEEEECCC-
T ss_conf 9999999997508998778999780799998589971688888656668312231699998531588469999998389-
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCEEEECCC
Q ss_conf 9988521599999202568774105998556
Q 001703 610 FDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 610 ~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
++++++||++.++|..+..+...+.|++|+.
T Consensus 112 ~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~s 142 (143)
T d1rsya_ 112 FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp SSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred CCCCCEEEEEEEECHHCCCCCCCCCEEECCC
T ss_conf 8889679999998203349999702883888
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.87 E-value=1.5e-21 Score=137.98 Aligned_cols=116 Identities=18% Similarity=0.403 Sum_probs=98.5
Q ss_pred CCCCEEEEEEEEEECCC-----------------CCCCEEEEEECCEE-EEEECCCCCCCCEEEEEEEEEEECCCCCEEE
Q ss_conf 98848999999822189-----------------99949999998938-7610615899995944999998449997599
Q 001703 1 MVSTRLYVYVLQGQDLL-----------------AKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNIDDEELV 62 (1024)
Q Consensus 1 ~~~~~L~V~V~~Ar~L~-----------------~~dpyv~i~l~~~~-~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~ 62 (1024)
|.++.|+|+|++|++|+ .+||||+++++++. .+|++++++.||+|||+|.|.+++ ...|.
T Consensus 3 ~~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~--~~~l~ 80 (136)
T d1gmia_ 3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN--GRKIE 80 (136)
T ss_dssp CEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEE
T ss_pred CEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEEC--CCCEE
T ss_conf 3789999999994799865344433324567888758379999189867670588498895396379999932--78459
Q ss_pred EEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEEECCC
Q ss_conf 999953889998898897129899868643343788899778983338777989963419999999991497
Q 001703 63 VSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKGH 134 (1024)
Q Consensus 63 i~V~d~d~~~~f~~~~d~~lG~~~i~l~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~l~l~~~~~~~ 134 (1024)
|+|||++ . .++|++||++.++|.++..... .....|++|+ +.|+|++.+.+.+.+|
T Consensus 81 i~V~d~~---~--~~~d~~iG~~~i~l~~l~~~~~-~~~~~w~~L~----------p~G~v~l~v~~~~~~g 136 (136)
T d1gmia_ 81 LAVFHDA---P--IGYDDFVANCTIQFEELLQNGS-RHFEDWIDLE----------PEGKVYVIIDLSGSSG 136 (136)
T ss_dssp EEEEECC---S--SSSCEEEEEEEEEHHHHTSTTC-SEEEEEEECB----------SSCEEEEEEEEEEEEC
T ss_pred EEEEEEC---C--CCCCEEEEEEEEEHHHHHHCCC-CCEEEEEECC----------CCCEEEEEEEEEECCC
T ss_conf 9999966---8--9874057899999799531689-6224899677----------8829999999990799
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.87 E-value=1.2e-22 Score=144.32 Aligned_cols=107 Identities=21% Similarity=0.398 Sum_probs=93.0
Q ss_pred CEEEEEEEEEEECCCCCCCCCCCCCEEEEEEC--------------CEEEEEECCCCCCCCEEEEEEEEEEECC---CCC
Q ss_conf 80999999994279999988989829999998--------------9798510015999996858989974359---998
Q 001703 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--------------GKTRTSSVQLQTCDPQWHDILEFDAMEE---PPS 597 (1024)
Q Consensus 535 ~~~l~V~vi~a~~L~~~d~~g~~DPyv~i~~~--------------~~~~kT~~~~~t~nP~Wne~f~f~~~~~---~~~ 597 (1024)
.|.|.|+|++|+||+++|..|.+||||++++. ..+++|+++++++||.|||.|.|..... ...
T Consensus 17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~ 96 (142)
T d1rh8a_ 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEEEEECCCCCCCC
T ss_conf 99999999973899886789997947899994676631000257883504346783888834678998752233346778
Q ss_pred EEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCC
Q ss_conf 399999962799998852159999920256877410599855655
Q 001703 598 VLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKL 642 (1024)
Q Consensus 598 ~l~i~V~D~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~~~ 642 (1024)
.|.|+|||+|. +++|++||++.|+|..+..+.....||+|+++.
T Consensus 97 ~L~i~V~d~d~-~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~~ 140 (142)
T d1rh8a_ 97 TLEVTVWDYDR-FSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT 140 (142)
T ss_dssp EEEEEEEEECS-SSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred EEEEEEEEECC-CCCCEEEEEEEEEHHHCCCCCCCEEEEECCCCC
T ss_conf 79999997058-999814689999867757889860999793867
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=4e-21 Score=135.44 Aligned_cols=119 Identities=18% Similarity=0.273 Sum_probs=95.6
Q ss_pred CCEEEEEEEEEECCC------CCCCEEEEEECCEEEEEECCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCCC
Q ss_conf 848999999822189------99949999998938761061589999594499999844999759999995388999889
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~dpyv~i~l~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~i~V~d~d~~~~f~~ 76 (1024)
.++|.|+|++|++++ .+||||++.++++.++|++++++.||+|||+|.|.+. ....|.|+|||++ . .
T Consensus 5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~--~~~~l~~~V~d~d---~--~ 77 (133)
T d2nq3a1 5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT--PVSKLHFRVWSHQ---T--L 77 (133)
T ss_dssp CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC--TTCEEEEEEEECC---S--S
T ss_pred CEEEEEEEEEEECCCCCCCCCCCCEEEEEEECCEEEEEEEEEECCCEEECCEEEEEEE--ECCEEEEEEEECC---C--C
T ss_conf 5389999999399976778899695999999984784379970362787656799998--0220699999826---8--8
Q ss_pred CCCCEEEEEEEECCCCCCCCCCCCCCEEEE--EECCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 889712989986864334378889977898--3338777989963419999999991
Q 001703 77 SSGELMGRVRVPVSSIAAEDNHMLPPTWFS--LETPKTRKFTNKDCGKILLTISLNG 131 (1024)
Q Consensus 77 ~~d~~lG~~~i~l~~l~~~~~~~~~~~W~~--L~~~~~~~~~~~~~G~I~l~l~~~~ 131 (1024)
++|++||++.++|.++....+......|+. |..... .....|+|.+.+.+..
T Consensus 78 ~~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~---~~~~~G~L~v~l~~~~ 131 (133)
T d2nq3a1 78 KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKE---PTETIGDLSICLDGLQ 131 (133)
T ss_dssp SCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSC---TTSEEEEEEEEEESEE
T ss_pred CCCCEEEEEEEEHHHHHHHCCCCEEEEEEEEECCCCCC---CCEEEEEEEEEEEEEE
T ss_conf 89946899999979934135995215999986578889---8327899999994388
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.84 E-value=5.3e-20 Score=128.98 Aligned_cols=99 Identities=19% Similarity=0.268 Sum_probs=73.1
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 09999999942799999889898299999989798510015999996858989974359998399999962799998852
Q 001703 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (1024)
Q Consensus 536 ~~l~V~vi~a~~L~~~d~~g~~DPyv~i~~~~~~~kT~~~~~t~nP~Wne~f~f~~~~~~~~~l~i~V~D~d~~~~~dd~ 615 (1024)
++|.|+|++|++|++.| ++||||++++++.+.+|+++++ .||+|||.|.|. ...+...|.|+|||+|. + +|++
T Consensus 2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k~-~nP~Wne~f~f~-v~~~~~~L~v~V~d~~~-~-~d~~ 74 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVRG-SQPSWEQDFMFE-INRLDLGLTVEVWNKGL-I-WDTM 74 (128)
T ss_dssp EEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEES-SSCEEEEEEEEE-ECCCSSEEEEEEEECCS-S-CEEE
T ss_pred EEEEEEEEEEECCCCCC---CCCEEEEEEECCEEEEEEEECC-CCCEEEEEEEEE-ECCCCCEEEEEEEECCC-C-CCCC
T ss_conf 38999999988898988---8680999995999899987468-998389999885-14665259999996787-6-7861
Q ss_pred CEEEEEECCCCCCC--CCCCEEEECCCC
Q ss_conf 15999992025687--741059985565
Q 001703 616 LGHAEINFLKHTST--ELADMWVSLEGK 641 (1024)
Q Consensus 616 iG~~~i~l~~l~~~--~~~~~w~~L~~~ 641 (1024)
||++.|+|.++... ...+.||+|..+
T Consensus 75 lG~~~I~L~~l~~~~~~~~~~W~~L~~~ 102 (128)
T d2cjta1 75 VGTVWIPLRTIRQSNEEGPGEWLTLDSQ 102 (128)
T ss_dssp EEEEEEEGGGSCBCSSCCCCEEEECBC-
T ss_pred EEEEEEEEHHHCCCCCCCCCEEEECCCC
T ss_conf 4999999433014788788850788863
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.84 E-value=8.7e-21 Score=133.49 Aligned_cols=107 Identities=21% Similarity=0.396 Sum_probs=89.4
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEE---CCEEEEEECCCCCCCCEEEEEEEEEEECC--CCCEEEEEEEECC
Q ss_conf 888099999999427999998898982999999---89798510015999996858989974359--9983999999627
Q 001703 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTC---NGKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 607 (1024)
Q Consensus 533 ~~~~~l~V~vi~a~~L~~~d~~g~~DPyv~i~~---~~~~~kT~~~~~t~nP~Wne~f~f~~~~~--~~~~l~i~V~D~d 607 (1024)
...+.|.|+|++|+||+..+.+|.+||||++++ +.++++|++++++.||+|||+|.|.+... ....|.|+|||+|
T Consensus 15 ~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~ 94 (130)
T d1dqva1 15 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD 94 (130)
T ss_dssp SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred CCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEECEEECCCCCEEEEEEEEEEECHHHCCCCEEEEEEEECC
T ss_conf 99999999998604896416899756678999716787518660476877706526788988457718986999998768
Q ss_pred CCCCCCCCCEEEEEECCCC--CCCCCCCEEEECCC
Q ss_conf 9999885215999992025--68774105998556
Q 001703 608 GPFDQATSLGHAEINFLKH--TSTELADMWVSLEG 640 (1024)
Q Consensus 608 ~~~~~dd~iG~~~i~l~~l--~~~~~~~~w~~L~~ 640 (1024)
. +++|++||++.|++... ........|++|..
T Consensus 95 ~-~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~ 128 (130)
T d1dqva1 95 R-FSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 128 (130)
T ss_dssp S-SSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred C-CCCCCEEEEEEECCHHHHHCCCCCCCEEEECCC
T ss_conf 8-999866899998761542027988868982216
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.84 E-value=6e-20 Score=128.67 Aligned_cols=118 Identities=22% Similarity=0.385 Sum_probs=91.7
Q ss_pred CCEEEEEEEEEECCC---CCCCEEEEEECCEEEEEECCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCC
Q ss_conf 848999999822189---99949999998938761061589999594499999844999759999995388999889889
Q 001703 3 STRLYVYVLQGQDLL---AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSG 79 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~---~~dpyv~i~l~~~~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~i~V~d~d~~~~f~~~~d 79 (1024)
.+.|.|+|++|++|. .+||||.+.+++++.+|.+++ +.||+|||+|.|.+. .....|.|+|||++ ..+|
T Consensus 1 ~~~L~V~v~~a~~l~~~~~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~-~~~~~L~v~V~d~~------~~~d 72 (128)
T d2cjta1 1 MSLLCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEIN-RLDLGLTVEVWNKG------LIWD 72 (128)
T ss_dssp CEEEEEEEEEEECSSCGGGCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEEC-CCSSEEEEEEEECC------SSCE
T ss_pred CEEEEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEEEC-CCCCEEEEEEEEEEC-CCCCEEEEEEEECC------CCCC
T ss_conf 938999999988898988868099999599989998746-899838999988514-66525999999678------7678
Q ss_pred CEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCC------CCCCCCCEEEEEEEE
Q ss_conf 71298998686433437888997789833387779------899634199999999
Q 001703 80 ELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRK------FTNKDCGKILLTISL 129 (1024)
Q Consensus 80 ~~lG~~~i~l~~l~~~~~~~~~~~W~~L~~~~~~~------~~~~~~G~I~l~l~~ 129 (1024)
++||++.|||.++...++ .....||+|..+.... ........|++.++|
T Consensus 73 ~~lG~~~I~L~~l~~~~~-~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~ 127 (128)
T d2cjta1 73 TMVGTVWIPLRTIRQSNE-EGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF 127 (128)
T ss_dssp EEEEEEEEEGGGSCBCSS-CCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred CCEEEEEEEEHHHCCCCC-CCCCEEEECCCCCCCCCCEEEEEECCCCCEEEEEEEC
T ss_conf 614999999433014788-7888507888634578987971436987689999983
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.83 E-value=2e-19 Score=125.58 Aligned_cols=114 Identities=24% Similarity=0.367 Sum_probs=91.1
Q ss_pred CCEEEEEEEEEECCC--------CCCCEEEEEEC-----CEEEEEECCCC-CCCCEEEEEEEEEEECCCCCEEEEEEEEC
Q ss_conf 848999999822189--------99949999998-----93876106158-99995944999998449997599999953
Q 001703 3 STRLYVYVLQGQDLL--------AKDSYVKVQIG-----KHKSKSRILKN-NSNPVWNEEFVFRVHNIDDEELVVSVFQH 68 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~--------~~dpyv~i~l~-----~~~~kT~v~~~-t~nP~WnE~f~f~v~~~~~~~L~i~V~d~ 68 (1024)
..+|+|+|++|++|+ .+||||++++. ..+++|+++++ ++||+|||+|.|.+..+....|+|+|||+
T Consensus 3 p~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~ 82 (131)
T d1qasa2 3 PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDY 82 (131)
T ss_dssp CEEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEEC
T ss_pred CEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCEEEEEEEEEEECCHHCEEEEEEEEE
T ss_conf 47999999992299977898899818699999966788857878888966657965977999997763232589999980
Q ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 88999889889712989986864334378889977898333877798996341999999999
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLN 130 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~l~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~l~l~~~ 130 (1024)
| . .++|++||++.+||..+.. ...|++|.+.. ++ ....+.|.+.+.+.
T Consensus 83 d---~--~~~d~~iG~~~i~l~~l~~------g~~~~~L~~~~-g~--~~~~~~L~v~i~~~ 130 (131)
T d1qasa2 83 D---S--SSKNDFIGQSTIPWNSLKQ------GYRHVHLLSKN-GD--QHPSATLFVKISIQ 130 (131)
T ss_dssp C---T--TTCCEEEEEEEEEGGGBCC------EEEEEEEECTT-SC--EEEEEEEEEEEEEE
T ss_pred C---C--CCCCCEEEEEEEEEECCCC------CCEEEECCCCC-CC--CCCCCEEEEEEEEE
T ss_conf 6---8--8898688999999762678------77899898999-59--98877899999998
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=1.4e-19 Score=126.60 Aligned_cols=105 Identities=19% Similarity=0.235 Sum_probs=89.9
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCEEEEEEC----CEEEEEECCCCCCCCEEEEEEEEEEECC--CCCEEEEEEEECC
Q ss_conf 880999999994279999988989829999998----9798510015999996858989974359--9983999999627
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 607 (1024)
Q Consensus 534 ~~~~l~V~vi~a~~L~~~d~~g~~DPyv~i~~~----~~~~kT~~~~~t~nP~Wne~f~f~~~~~--~~~~l~i~V~D~d 607 (1024)
..+.|.|+|++|+||+. .|.+||||++.+. ...++|++++++.||+|||.|.|.+... ....|.|+|||+|
T Consensus 24 ~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~ 100 (138)
T d1wfma_ 24 QKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCD 100 (138)
T ss_dssp TTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECC
T ss_pred CCCEEEEEEEECCCCCC---CCCCCCEEEEEECCCCCCCCEEEEEECCCCCCEEEEEEEEEEEEHHCCCEEEEEEEEEEC
T ss_conf 89999999998679898---998383799998799885425303877789953813089986510166218999874205
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCC
Q ss_conf 99998852159999920256877410599855655
Q 001703 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEGKL 642 (1024)
Q Consensus 608 ~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~~~ 642 (1024)
. ++++++||++.|+|.++......+.|++|.++.
T Consensus 101 ~-~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~~ 134 (138)
T d1wfma_ 101 R-FSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG 134 (138)
T ss_dssp S-SCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred C-CCCCEEEEEEEEEHHHCCCCCCCEEEEECCCCC
T ss_conf 5-663145459999857734898865969588899
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.82 E-value=3.2e-20 Score=130.25 Aligned_cols=100 Identities=28% Similarity=0.511 Sum_probs=84.7
Q ss_pred CCCEEEEEEEEEECCC------CCCCEEEEEE-----CCEEEEEECCCCCCCCEEEEEEEEEEE-CCCCCEEEEEEEECC
Q ss_conf 8848999999822189------9994999999-----893876106158999959449999984-499975999999538
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRVH-NIDDEELVVSVFQHN 69 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~dpyv~i~l-----~~~~~kT~v~~~t~nP~WnE~f~f~v~-~~~~~~L~i~V~d~d 69 (1024)
..++|.|+|++|+||+ .+||||++++ +..+++|+++++|.||+|||+|.|.+. ......|.|.|||+|
T Consensus 13 ~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d 92 (132)
T d1a25a_ 13 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD 92 (132)
T ss_dssp SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECC
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCEEEEEEEECC
T ss_conf 49999999985549988789989690899998267888664088416588998455499999576456978769978067
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECC
Q ss_conf 89998898897129899868643343788899778983338
Q 001703 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110 (1024)
Q Consensus 70 ~~~~f~~~~d~~lG~~~i~l~~l~~~~~~~~~~~W~~L~~~ 110 (1024)
+ .++|++||++.+++.++... ....||+|.+.
T Consensus 93 ---~--~~~d~~iG~~~i~l~~l~~~----~~~~W~~L~~~ 124 (132)
T d1a25a_ 93 ---L--TSRNDFMGSLSFGISELQKA----GVDGWFKLLSQ 124 (132)
T ss_dssp ---S--SSCCEEEEEEEEEHHHHTTC----CEEEEEECBCH
T ss_pred ---C--CCCCCEEEEEEEEHHHCCCC----CCCEEEECCCC
T ss_conf ---7--88896769999968994888----78828999788
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.81 E-value=1.6e-19 Score=126.27 Aligned_cols=99 Identities=28% Similarity=0.576 Sum_probs=85.6
Q ss_pred CCCEEEEEEEEEECCC------CCCCEEEEEE---CCEEEEEECCCCCCCCEEEEEEEEEEE--CCCCCEEEEEEEECCC
Q ss_conf 8848999999822189------9994999999---893876106158999959449999984--4999759999995388
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHND 70 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~dpyv~i~l---~~~~~kT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~i~V~d~d~ 70 (1024)
...+|+|+|++|+||+ .+||||++++ +..+.+|++++++.||+|||+|.|.+. +.....|.|+|||++
T Consensus 32 ~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d- 110 (143)
T d1rsya_ 32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFD- 110 (143)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECC-
T ss_pred CCCEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEEEEEEEEEEEECCCCCEEEEEEEECC-
T ss_conf 9999999999750899877899978079999858997168888865666831223169999853158846999999838-
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEE
Q ss_conf 99988988971298998686433437888997789833
Q 001703 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 71 ~~~f~~~~d~~lG~~~i~l~~l~~~~~~~~~~~W~~L~ 108 (1024)
+ .+++++||++.++|.++... .....||+|+
T Consensus 111 --~--~~~~~~iG~~~i~L~~~~~~---~~~~~W~~L~ 141 (143)
T d1rsya_ 111 --R--FSKHDIIGEFKVPMNTVDFG---HVTEEWRDLQ 141 (143)
T ss_dssp --S--SSCCEEEEEEEEEGGGCCCS---SCEEEEEECB
T ss_pred --C--CCCCCEEEEEEEECHHCCCC---CCCCCEEECC
T ss_conf --9--88896799999982033499---9970288388
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1.9e-19 Score=125.77 Aligned_cols=105 Identities=19% Similarity=0.374 Sum_probs=87.4
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEE-----CCEEEEEECCCCCCCCEEEEEEEEEEECC---CCCEEEEEEE
Q ss_conf 888099999999427999998898982999999-----89798510015999996858989974359---9983999999
Q 001703 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTC-----NGKTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVF 604 (1024)
Q Consensus 533 ~~~~~l~V~vi~a~~L~~~d~~g~~DPyv~i~~-----~~~~~kT~~~~~t~nP~Wne~f~f~~~~~---~~~~l~i~V~ 604 (1024)
...+.|.|+|++|+||++.+..+.+||||++.+ ...+++|++++++.||+|||+|.|..... ....|.|+||
T Consensus 11 ~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~ 90 (125)
T d2bwqa1 11 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW 90 (125)
T ss_dssp TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEECCCCCCEECCEEEEEEECHHHCCCCEEEEEEE
T ss_conf 99999999999827998867999989789999967788864121677868999898539999603866628887999999
Q ss_pred ECCCCC--CCCCCCEEEEEECCCCCCCCCCCEEEECC
Q ss_conf 627999--98852159999920256877410599855
Q 001703 605 DFDGPF--DQATSLGHAEINFLKHTSTELADMWVSLE 639 (1024)
Q Consensus 605 D~d~~~--~~dd~iG~~~i~l~~l~~~~~~~~w~~L~ 639 (1024)
|.|. + +++++||++.++|.++...+. ..||+|+
T Consensus 91 d~~~-~~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L~ 125 (125)
T d2bwqa1 91 DQAR-VREEESEFLGEILIELETALLDDE-PHWYKLQ 125 (125)
T ss_dssp EC--------CEEEEEEEEEGGGCCCSSC-EEEEECC
T ss_pred ECCC-CCCCCCEEEEEEEEECHHCCCCCC-CEEEECC
T ss_conf 8888-889999069999998055088999-9989594
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.81 E-value=5.4e-19 Score=123.16 Aligned_cols=106 Identities=25% Similarity=0.447 Sum_probs=88.0
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCEEEEEEC--C---EEEEEECCCCCCCCEEEEEEEEEEECCC--CCEEEEEEEEC
Q ss_conf 880999999994279999988989829999998--9---7985100159999968589899743599--98399999962
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEEP--PSVLDVEVFDF 606 (1024)
Q Consensus 534 ~~~~l~V~vi~a~~L~~~d~~g~~DPyv~i~~~--~---~~~kT~~~~~t~nP~Wne~f~f~~~~~~--~~~l~i~V~D~ 606 (1024)
..+.|.|+|++|+||+..+.++.+||||++++. + ...+|++++++.||+|||+|.|.+.... ...|.|+|||+
T Consensus 23 ~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~ 102 (157)
T d1uowa_ 23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY 102 (157)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred CCCEEEEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCEECCCCCCCCCCCCCCEEEEEECHHHCCCCEEEEEECCC
T ss_conf 89999999999797136557999790699999538862345011023688896367769999608993763899998156
Q ss_pred CCCCCCCCCCEEEEEECCCC------------CCCCCCCEEEECCC
Q ss_conf 79999885215999992025------------68774105998556
Q 001703 607 DGPFDQATSLGHAEINFLKH------------TSTELADMWVSLEG 640 (1024)
Q Consensus 607 d~~~~~dd~iG~~~i~l~~l------------~~~~~~~~w~~L~~ 640 (1024)
|. ++++++||++.|++... .+......|++|..
T Consensus 103 ~~-~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~ 147 (157)
T d1uowa_ 103 DK-IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 147 (157)
T ss_dssp CS-SSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred CC-CCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 98-8888466999980600881677899998589983007674899
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.80 E-value=3.9e-20 Score=129.76 Aligned_cols=100 Identities=26% Similarity=0.534 Sum_probs=84.7
Q ss_pred CCEEEEEEEEEECCC------CCCCEEEEEECC--------------EEEEEECCCCCCCCEEEEEEEEE-EE--CCCCC
Q ss_conf 848999999822189------999499999989--------------38761061589999594499999-84--49997
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK--------------HKSKSRILKNNSNPVWNEEFVFR-VH--NIDDE 59 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~dpyv~i~l~~--------------~~~kT~v~~~t~nP~WnE~f~f~-v~--~~~~~ 59 (1024)
.+.|.|+|++|+||+ .+||||++++.. .++||++++++.||.|||+|.|. ++ ++...
T Consensus 17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~ 96 (142)
T d1rh8a_ 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEEEEECCCCCCCC
T ss_conf 99999999973899886789997947899994676631000257883504346783888834678998752233346778
Q ss_pred EEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 5999999538899988988971298998686433437888997789833387
Q 001703 60 ELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPK 111 (1024)
Q Consensus 60 ~L~i~V~d~d~~~~f~~~~d~~lG~~~i~l~~l~~~~~~~~~~~W~~L~~~~ 111 (1024)
.|.|+|||++ + .++|++||++.++|.++.... ....||+|+ ++
T Consensus 97 ~L~i~V~d~d---~--~~~~~~lG~~~i~L~~l~~~~---~~~~W~~L~-~~ 139 (142)
T d1rh8a_ 97 TLEVTVWDYD---R--FSSNDFLGEVLIDLSSTSHLD---NTPRWYPLK-EQ 139 (142)
T ss_dssp EEEEEEEEEC---S--SSCEEEEEEEEEETTSCGGGT---TCCEEEECB-CC
T ss_pred EEEEEEEEEC---C--CCCCEEEEEEEEEHHHCCCCC---CCEEEEECC-CC
T ss_conf 7999999705---8--999814689999867757889---860999793-86
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=7.1e-19 Score=122.45 Aligned_cols=93 Identities=22% Similarity=0.322 Sum_probs=79.1
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEE--CC---EEEEEECCCCCCCCEEEEEEEEEEECCC--CCEEEEEEEE
Q ss_conf 888099999999427999998898982999999--89---7985100159999968589899743599--9839999996
Q 001703 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTC--NG---KTRTSSVQLQTCDPQWHDILEFDAMEEP--PSVLDVEVFD 605 (1024)
Q Consensus 533 ~~~~~l~V~vi~a~~L~~~d~~g~~DPyv~i~~--~~---~~~kT~~~~~t~nP~Wne~f~f~~~~~~--~~~l~i~V~D 605 (1024)
...+.|.|+|++|+||++.+..+.+||||++++ ++ .+.+|++++++.||.|||+|.|.+.... ...|.|+|||
T Consensus 12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d 91 (138)
T d1w15a_ 12 STTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLD 91 (138)
T ss_dssp TTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEECCCCCCEECCEEEEEECHHHHCCCEEEEEEEE
T ss_conf 88999999999968899988899857899999957742676435531889999737747999823799275589999986
Q ss_pred CCCCCCCCCCCEEEEEECCCC
Q ss_conf 279999885215999992025
Q 001703 606 FDGPFDQATSLGHAEINFLKH 626 (1024)
Q Consensus 606 ~d~~~~~dd~iG~~~i~l~~l 626 (1024)
+|. ++++++||++.|++...
T Consensus 92 ~~~-~~~~~~iG~~~i~l~~~ 111 (138)
T d1w15a_ 92 SER-GSRNEVIGRLVLGATAE 111 (138)
T ss_dssp CCT-TSCCEEEEEEEESTTCC
T ss_pred CCC-CCCCCEEEEEEECCHHC
T ss_conf 799-88897889999866008
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=1.5e-18 Score=120.67 Aligned_cols=105 Identities=20% Similarity=0.352 Sum_probs=86.7
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEE-----CCEEEEEECCCCCCCCEEEEEEEEEEECC--CCCEEEEEEEE
Q ss_conf 888099999999427999998898982999999-----89798510015999996858989974359--99839999996
Q 001703 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTC-----NGKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFD 605 (1024)
Q Consensus 533 ~~~~~l~V~vi~a~~L~~~d~~g~~DPyv~i~~-----~~~~~kT~~~~~t~nP~Wne~f~f~~~~~--~~~~l~i~V~D 605 (1024)
...+.|.|+|++|+||+..+..|.+||||++++ ...+++|++++++.||+|||+|.|.+... ....|.|+|||
T Consensus 12 ~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~ 91 (137)
T d2cm5a1 12 TQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWD 91 (137)
T ss_dssp TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCEEECCEEECCCCCCCCCEEEEEEEEHHHCCCCEEEEEEEE
T ss_conf 99999999999987899977787768699999976886656636875718999856649999968788561299997661
Q ss_pred CCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCC
Q ss_conf 27999988521599999202568774105998556
Q 001703 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 606 ~d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
+|. ++++++||++.+++..+. .....|++|..
T Consensus 92 ~~~-~~~~~~iG~~~i~l~~~~--~~~~~W~~l~~ 123 (137)
T d2cm5a1 92 YDI-GKSNDYIGGCQLGISAKG--ERLKHWYECLK 123 (137)
T ss_dssp CCS-SSCCEEEEEEEEETTCCH--HHHHHHHHHHH
T ss_pred CCC-CCCCCEEEEEEECCCCCC--CCHHHHHHHHH
T ss_conf 799-988879999874730047--31102315762
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=1.2e-18 Score=121.25 Aligned_cols=101 Identities=16% Similarity=0.305 Sum_probs=86.8
Q ss_pred CCCEEEEEEEEEECCC---CCCCEEEEEECC----EEEEEECCCCCCCCEEEEEEEEEEE--CCCCCEEEEEEEECCCCC
Q ss_conf 8848999999822189---999499999989----3876106158999959449999984--499975999999538899
Q 001703 2 VSTRLYVYVLQGQDLL---AKDSYVKVQIGK----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDDS 72 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~---~~dpyv~i~l~~----~~~kT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~i~V~d~d~~~ 72 (1024)
...+|.|+|++|++|+ .+||||++++.+ ..++|++++++.||+|||+|.|.+. ++....|.|+|||++
T Consensus 24 ~~~~L~V~v~~a~~L~~~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~--- 100 (138)
T d1wfma_ 24 QKAELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCD--- 100 (138)
T ss_dssp TTTEEEEEEEEEECCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECC---
T ss_pred CCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCEEEEEEEEEEEEHHCCCEEEEEEEEEEC---
T ss_conf 89999999998679898998383799998799885425303877789953813089986510166218999874205---
Q ss_pred CCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 988988971298998686433437888997789833387
Q 001703 73 GLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPK 111 (1024)
Q Consensus 73 ~f~~~~d~~lG~~~i~l~~l~~~~~~~~~~~W~~L~~~~ 111 (1024)
+ .+++++||++.|+|.++... .....|+.|+ ++
T Consensus 101 ~--~~~~~~iG~~~i~L~~l~~~---~~~~~W~~L~-~~ 133 (138)
T d1wfma_ 101 R--FSRHSVAGELRLGLDGTSVP---LGAAQWGELK-TS 133 (138)
T ss_dssp S--SCTTSCSEEEEEESSSSSSC---TTCCEEEECC-CC
T ss_pred C--CCCCEEEEEEEEEHHHCCCC---CCCEEEEECC-CC
T ss_conf 5--66314545999985773489---8865969588-89
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=3.8e-18 Score=118.24 Aligned_cols=103 Identities=19% Similarity=0.274 Sum_probs=84.5
Q ss_pred EEEEEEEEEEECCCCCCCCC-CCCCEEEEEE---CCEEEEEECCCCCCCCEEEEEEEEEEECC---CCCEEEEEEEECCC
Q ss_conf 09999999942799999889-8982999999---89798510015999996858989974359---99839999996279
Q 001703 536 WVLTVALVEGVNLASSEMTG-LSDPYVVFTC---NGKTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFDFDG 608 (1024)
Q Consensus 536 ~~l~V~vi~a~~L~~~d~~g-~~DPyv~i~~---~~~~~kT~~~~~t~nP~Wne~f~f~~~~~---~~~~l~i~V~D~d~ 608 (1024)
..|.|+|++|+||+..+..+ .+||||++.+ +.++++|++++++.||.|||+|.|..... ....|.|+|||+|.
T Consensus 22 ~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~ 101 (138)
T d1ugka_ 22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDR 101 (138)
T ss_dssp TEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECS
T ss_pred CEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEECEEEECCCCCCEEEEEEEEEECHHHCCCCEEEEEEEECCC
T ss_conf 99999999810989888999865339999992899986707147677897445689996128899556558999998999
Q ss_pred CCCCCCCCEEEEEECCCCCCC-CCCCEEEECC
Q ss_conf 999885215999992025687-7410599855
Q 001703 609 PFDQATSLGHAEINFLKHTST-ELADMWVSLE 639 (1024)
Q Consensus 609 ~~~~dd~iG~~~i~l~~l~~~-~~~~~w~~L~ 639 (1024)
+++|++||++.++|.++... .....|..+.
T Consensus 102 -~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~ 132 (138)
T d1ugka_ 102 -FSRDDIIGEVLIPLSGIELSEGKMLMNREII 132 (138)
T ss_dssp -SCCCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred -CCCCCEEEEEEEECCCCCCCCCEEEEEEECC
T ss_conf -8889578999998341657787099996616
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.78 E-value=1.5e-18 Score=120.60 Aligned_cols=101 Identities=31% Similarity=0.437 Sum_probs=82.1
Q ss_pred CCCEEEEEEEEEECCC------CCCCEEEEEEC---CEEEEEECCCCCCCCEEEEEEEEEEE--CCCCCEEEEEEEECCC
Q ss_conf 8848999999822189------99949999998---93876106158999959449999984--4999759999995388
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHND 70 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~dpyv~i~l~---~~~~kT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~i~V~d~d~ 70 (1024)
..++|.|+|++|+||+ .+||||++++. .++++|++++++.||+|||+|.|.++ +.....|.|+|||++
T Consensus 16 ~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~- 94 (130)
T d1dqva1 16 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD- 94 (130)
T ss_dssp SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC-
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEECEEECCCCCEEEEEEEEEEECHHHCCCCEEEEEEEECC-
T ss_conf 9999999998604896416899756678999716787518660476877706526788988457718986999998768-
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEE
Q ss_conf 99988988971298998686433437888997789833
Q 001703 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 71 ~~~f~~~~d~~lG~~~i~l~~l~~~~~~~~~~~W~~L~ 108 (1024)
+ .++|++||++.|++....... ......|++|.
T Consensus 95 --~--~~~d~~iG~~~i~~~~~l~~~-~~~~~~W~~L~ 127 (130)
T d1dqva1 95 --R--FSRHDLIGQVVLDNLLELAEQ-PPDRPLWRDIL 127 (130)
T ss_dssp --S--SSCCCEEEEEECCCTTGGGSS-CSSCCCCEECB
T ss_pred --C--CCCCCEEEEEEECCHHHHHCC-CCCCCEEEECC
T ss_conf --8--999866899998761542027-98886898221
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.5e-18 Score=120.56 Aligned_cols=100 Identities=25% Similarity=0.613 Sum_probs=82.5
Q ss_pred CCCEEEEEEEEEECCC------CCCCEEEEEEC-----CEEEEEECCCCCCCCEEEEEEEEE-EE--CCCCCEEEEEEEE
Q ss_conf 8848999999822189------99949999998-----938761061589999594499999-84--4999759999995
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFR-VH--NIDDEELVVSVFQ 67 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~dpyv~i~l~-----~~~~kT~v~~~t~nP~WnE~f~f~-v~--~~~~~~L~i~V~d 67 (1024)
...+|.|+|++|+||+ .+||||++++. ..+++|++++++.||.|||+|.|. +. +.....|.|+|||
T Consensus 12 ~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d 91 (125)
T d2bwqa1 12 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWD 91 (125)
T ss_dssp TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEE
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEECCCCCCEECCEEEEEEECHHHCCCCEEEEEEEE
T ss_conf 99999999998279988679999897899999677888641216778689998985399996038666288879999998
Q ss_pred CCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEE
Q ss_conf 38899988988971298998686433437888997789833
Q 001703 68 HNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 68 ~d~~~~f~~~~d~~lG~~~i~l~~l~~~~~~~~~~~W~~L~ 108 (1024)
++ ++..+++++||++.++|.++...+ ...||+|+
T Consensus 92 ~~---~~~~~~~~~iG~~~i~l~~~~~~~----~~~Wy~L~ 125 (125)
T d2bwqa1 92 QA---RVREEESEFLGEILIELETALLDD----EPHWYKLQ 125 (125)
T ss_dssp C----------CEEEEEEEEEGGGCCCSS----CEEEEECC
T ss_pred CC---CCCCCCCEEEEEEEEECHHCCCCC----CCEEEECC
T ss_conf 88---888999906999999805508899----99989594
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=5.4e-18 Score=117.40 Aligned_cols=103 Identities=31% Similarity=0.508 Sum_probs=83.7
Q ss_pred CCCEEEEEEEEEECCC------CCCCEEEEEECC-----EEEEEECCCCCCCCEEEEEEEEEEE--CCCCCEEEEEEEEC
Q ss_conf 8848999999822189------999499999989-----3876106158999959449999984--49997599999953
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~dpyv~i~l~~-----~~~kT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~i~V~d~ 68 (1024)
..++|.|+|++|+||+ .+||||++++.. .+++|++++++.||+|||+|.|.++ +.....|.|.|||+
T Consensus 23 ~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~ 102 (157)
T d1uowa_ 23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY 102 (157)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred CCCEEEEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCEECCCCCCCCCCCCCCEEEEEECHHHCCCCEEEEEECCC
T ss_conf 89999999999797136557999790699999538862345011023688896367769999608993763899998156
Q ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCC---------CCCCCCCEEEEEEC
Q ss_conf 889998898897129899868643343---------78889977898333
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSIAAE---------DNHMLPPTWFSLET 109 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~l~~l~~~---------~~~~~~~~W~~L~~ 109 (1024)
+ + .+++++||++.|++.....+ ....+..+||+|+.
T Consensus 103 ~---~--~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~ 147 (157)
T d1uowa_ 103 D---K--IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 147 (157)
T ss_dssp C---S--SSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred C---C--CCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 9---8--8888466999980600881677899998589983007674899
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.75 E-value=1.4e-17 Score=115.05 Aligned_cols=102 Identities=25% Similarity=0.450 Sum_probs=81.3
Q ss_pred CCCEEEEEEEEEECCC------CCCCEEEEEEC-----CEEEEEECCCCCCCCEEEEEEEEEEE--CCCCCEEEEEEEEC
Q ss_conf 8848999999822189------99949999998-----93876106158999959449999984--49997599999953
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~dpyv~i~l~-----~~~~kT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~i~V~d~ 68 (1024)
..++|.|+|++|+||+ .+||||++++. ..+++|++++++.||+|||+|.|.++ +.....|.|.|||+
T Consensus 13 ~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~ 92 (137)
T d2cm5a1 13 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDY 92 (137)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCEEECCEEECCCCCCCCCEEEEEEEEHHHCCCCEEEEEEEEC
T ss_conf 99999999999878999777877686999999768866566368757189998566499999687885612999976617
Q ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCC---------CCCCCCCEEEEEE
Q ss_conf 889998898897129899868643343---------7888997789833
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSIAAE---------DNHMLPPTWFSLE 108 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~l~~l~~~---------~~~~~~~~W~~L~ 108 (1024)
+ . .+++++||++.+++..+..+ ....+..+|++|+
T Consensus 93 ~---~--~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~v~~Wh~L~ 136 (137)
T d2cm5a1 93 D---I--GKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQ 136 (137)
T ss_dssp C---S--SSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEECB
T ss_pred C---C--CCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCEEEECEECC
T ss_conf 9---9--988879999874730047311023157629798612742065
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=1.8e-17 Score=114.34 Aligned_cols=102 Identities=28% Similarity=0.436 Sum_probs=81.3
Q ss_pred CCCEEEEEEEEEECCC------CCCCEEEEEEC--C---EEEEEECCCCCCCCEEEEEEEEEEE--CCCCCEEEEEEEEC
Q ss_conf 8848999999822189------99949999998--9---3876106158999959449999984--49997599999953
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIG--K---HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~dpyv~i~l~--~---~~~kT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~i~V~d~ 68 (1024)
..++|.|+|++|+||+ .+||||++++. . .+++|++++++.||.|||+|.|.++ +.....|.|.|||+
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~ 92 (138)
T d1w15a_ 13 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDS 92 (138)
T ss_dssp TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEEC
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEECCCCCCEECCEEEEEECHHHHCCCEEEEEEEEC
T ss_conf 89999999999688999888998578999999577426764355318899997377479998237992755899999867
Q ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCC---------CCCCCCCEEEEEE
Q ss_conf 889998898897129899868643343---------7888997789833
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSIAAE---------DNHMLPPTWFSLE 108 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~l~~l~~~---------~~~~~~~~W~~L~ 108 (1024)
+ + .+++++||++.+++.....+ ....+..+||+|.
T Consensus 93 ~---~--~~~~~~iG~~~i~l~~~~~~~~hW~~ll~~~~k~i~~Wh~L~ 136 (138)
T d1w15a_ 93 E---R--GSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLC 136 (138)
T ss_dssp C---T--TSCCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred C---C--CCCCCEEEEEEECCHHCCCHHHHHHHHHHCCCCEEEECEECC
T ss_conf 9---9--888978899998660088267889999868999013882860
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=3.6e-17 Score=112.62 Aligned_cols=88 Identities=27% Similarity=0.542 Sum_probs=75.7
Q ss_pred CCEEEEEEEEEECCC-------CCCCEEEEEE---CCEEEEEECCCCCCCCEEEEEEEEE-EE--CCCCCEEEEEEEECC
Q ss_conf 848999999822189-------9994999999---8938761061589999594499999-84--499975999999538
Q 001703 3 STRLYVYVLQGQDLL-------AKDSYVKVQI---GKHKSKSRILKNNSNPVWNEEFVFR-VH--NIDDEELVVSVFQHN 69 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~dpyv~i~l---~~~~~kT~v~~~t~nP~WnE~f~f~-v~--~~~~~~L~i~V~d~d 69 (1024)
...|.|+|++|+||+ .+||||++++ ...+++|++++++.||.|||+|.|. ++ +.....|+|+|||+|
T Consensus 21 ~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d 100 (138)
T d1ugka_ 21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFD 100 (138)
T ss_dssp GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEEC
T ss_pred CCEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEECEEEECCCCCCEEEEEEEEEECHHHCCCCEEEEEEEECC
T ss_conf 99999999981098988899986533999999289998670714767789744568999612889955655899999899
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 89998898897129899868643343
Q 001703 70 DDSGLFGSSGELMGRVRVPVSSIAAE 95 (1024)
Q Consensus 70 ~~~~f~~~~d~~lG~~~i~l~~l~~~ 95 (1024)
+ .+++++||++.++|.++...
T Consensus 101 ---~--~~~~~~iG~~~i~L~~~~~~ 121 (138)
T d1ugka_ 101 ---R--FSRDDIIGEVLIPLSGIELS 121 (138)
T ss_dssp ---S--SCCCCCCEEEEEECTTCCCT
T ss_pred ---C--CCCCCEEEEEEEECCCCCCC
T ss_conf ---9--88895789999983416577
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.72 E-value=7.2e-19 Score=122.41 Aligned_cols=105 Identities=26% Similarity=0.452 Sum_probs=86.0
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCEEEEEECC-----EEEEEECCCCCCCCEEEEEEEEEEECC--CCCEEEEEEEEC
Q ss_conf 8809999999942799999889898299999989-----798510015999996858989974359--998399999962
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDF 606 (1024)
Q Consensus 534 ~~~~l~V~vi~a~~L~~~d~~g~~DPyv~i~~~~-----~~~kT~~~~~t~nP~Wne~f~f~~~~~--~~~~l~i~V~D~ 606 (1024)
..|.|.|+|++|+||+..+..|.+||||++++.. .+.+|++++++.||+|||.|.|.+... ....|.|+|||+
T Consensus 18 ~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~ 97 (145)
T d1dqva2 18 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDY 97 (145)
T ss_dssp TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEEC
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCEEECCEEEECCCCCEECCEEEEEEEHHHCCCCEEEEEEEEC
T ss_conf 99999999999867987378999584099999067766356067899488774033069999841136877899999756
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCC
Q ss_conf 7999988521599999202568774105998556
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 607 d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
+. ++++++||++.|++..+... ....|++|..
T Consensus 98 ~~-~~~~~~iG~~~i~l~~~~~~-~~~~W~~l~~ 129 (145)
T d1dqva2 98 DC-IGHNEVIGVCRVGPEAADPH-GREHWAEMLA 129 (145)
T ss_dssp CS-SSCCEEEEECCCSSCTTCHH-HHHHHHTSSS
T ss_pred CC-CCCCCEEEEEEECCHHCCCH-HHHHHHHHHH
T ss_conf 99-98896799999881671953-5677999986
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=9e-17 Score=110.33 Aligned_cols=107 Identities=13% Similarity=0.230 Sum_probs=80.7
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCEEEEEECCE-----EEEEECCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCC
Q ss_conf 99999999427999998898982999999897-----9851001599999685898997435999839999996279999
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-----TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFD 611 (1024)
Q Consensus 537 ~l~V~vi~a~~L~~~d~~g~~DPyv~i~~~~~-----~~kT~~~~~t~nP~Wne~f~f~~~~~~~~~l~i~V~D~d~~~~ 611 (1024)
.++|.+....--+.....|.+||||.+++++. ..+|+++++|+||+|||+|+|.+. ....|.|.|||+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~--~~~~l~i~V~d~d---- 77 (123)
T d1bdya_ 4 FLRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIY--EGRVIQIVLMRAA---- 77 (123)
T ss_dssp EEEEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECC--TTCEEEEEEEEET----
T ss_pred EEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCEEEEEEEC--CCCEEEEEEEECC----
T ss_conf 6999999740566889998889779999768665334438998679788634669999974--4667999999864----
Q ss_pred CCCCCEEEEEECCCCC-----CCCCCCEEEECCCCCCCCCCCEEEEEEEE
Q ss_conf 8852159999920256-----87741059985565556654126999997
Q 001703 612 QATSLGHAEINFLKHT-----STELADMWVSLEGKLAQSAQSKVHLRIFL 656 (1024)
Q Consensus 612 ~dd~iG~~~i~l~~l~-----~~~~~~~w~~L~~~~~~~~~g~l~l~i~~ 656 (1024)
++++|.+.+++..+. .+...+.|++|++ .|+|++.+.+
T Consensus 78 -d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~------~Gkl~l~v~~ 120 (123)
T d1bdya_ 78 -EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP------QAKVLMCVQY 120 (123)
T ss_dssp -TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS------SCEEEEEEEE
T ss_pred -CCCCCCCEEEHHHEEECCCCCCCCCCEEEECCC------CEEEEEEEEE
T ss_conf -353675177566624011368986337970888------8899999999
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.68 E-value=8.7e-18 Score=116.18 Aligned_cols=102 Identities=26% Similarity=0.408 Sum_probs=82.0
Q ss_pred CCCEEEEEEEEEECCC------CCCCEEEEEECCE-----EEEEECCCCCCCCEEEEEEEEEEE--CCCCCEEEEEEEEC
Q ss_conf 8848999999822189------9994999999893-----876106158999959449999984--49997599999953
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIGKH-----KSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~dpyv~i~l~~~-----~~kT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~i~V~d~ 68 (1024)
..++|.|+|++|+||+ .+||||++++.+. +++|++++++.||+|||+|.|.++ +.....|.|.|||+
T Consensus 18 ~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~ 97 (145)
T d1dqva2 18 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDY 97 (145)
T ss_dssp TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEEC
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCEEECCEEEECCCCCEECCEEEEEEEHHHCCCCEEEEEEEEC
T ss_conf 99999999999867987378999584099999067766356067899488774033069999841136877899999756
Q ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCC----------CCCCCCCEEEEEE
Q ss_conf 889998898897129899868643343----------7888997789833
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSIAAE----------DNHMLPPTWFSLE 108 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~l~~l~~~----------~~~~~~~~W~~L~ 108 (1024)
+ . .+++++||++.|++..+... ..+.+..+|+.|.
T Consensus 98 ~---~--~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~p~~~i~~Wh~L~ 142 (145)
T d1dqva2 98 D---C--IGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLV 142 (145)
T ss_dssp C---S--SSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCB
T ss_pred C---C--CCCCCEEEEEEECCHHCCCHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 9---9--9889679999988167195356779999868998454848787
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.66 E-value=1.4e-16 Score=109.18 Aligned_cols=106 Identities=18% Similarity=0.275 Sum_probs=84.1
Q ss_pred EEEEEEEEEECCC----CCCCEEEEEECCE-----EEEEECCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCC
Q ss_conf 8999999822189----9994999999893-----876106158999959449999984499975999999538899988
Q 001703 5 RLYVYVLQGQDLL----AKDSYVKVQIGKH-----KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLF 75 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~----~~dpyv~i~l~~~-----~~kT~v~~~t~nP~WnE~f~f~v~~~~~~~L~i~V~d~d~~~~f~ 75 (1024)
++.|.++.+..++ .+||||+|++.+. .++|+++++|+||+|||+|.|.+. ....|.|.|||+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~--~~~~l~i~V~d~d------ 77 (123)
T d1bdya_ 6 RISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIY--EGRVIQIVLMRAA------ 77 (123)
T ss_dssp EEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECC--TTCEEEEEEEEET------
T ss_pred EEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCEEEEEEEC--CCCEEEEEEEECC------
T ss_conf 99999740566889998889779999768665334438998679788634669999974--4667999999864------
Q ss_pred CCCCCEEEEEEEECCCCCCC--CCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 98897129899868643343--788899778983338777989963419999999991
Q 001703 76 GSSGELMGRVRVPVSSIAAE--DNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (1024)
Q Consensus 76 ~~~d~~lG~~~i~l~~l~~~--~~~~~~~~W~~L~~~~~~~~~~~~~G~I~l~l~~~~ 131 (1024)
++++|.+.+++..+... ......+.|++|+ ..|+|++.+.|..
T Consensus 78 ---d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~----------~~Gkl~l~v~~f~ 122 (123)
T d1bdya_ 78 ---EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ----------PQAKVLMCVQYFL 122 (123)
T ss_dssp ---TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB----------SSCEEEEEEEEEE
T ss_pred ---CCCCCCCEEEHHHEEECCCCCCCCCCEEEECC----------CCEEEEEEEEEEC
T ss_conf ---35367517756662401136898633797088----------8889999999963
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.5e-14 Score=97.58 Aligned_cols=109 Identities=16% Similarity=0.239 Sum_probs=63.6
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCEEEEEEC------CEEEEEEC--CCCCCCCEEEEE-EEEEEEC-CCCCEEEEEEEEC
Q ss_conf 999999994279999988989829999998------97985100--159999968589-8997435-9998399999962
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCN------GKTRTSSV--QLQTCDPQWHDI-LEFDAME-EPPSVLDVEVFDF 606 (1024)
Q Consensus 537 ~l~V~vi~a~~L~~~d~~g~~DPyv~i~~~------~~~~kT~~--~~~t~nP~Wne~-f~f~~~~-~~~~~l~i~V~D~ 606 (1024)
.|+|+|++|++|+.. +.||||++++- .++.+|++ ..+++||+|||+ |.|.... .....|.|.|||+
T Consensus 2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~ 77 (122)
T d2zkmx2 2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE 77 (122)
T ss_dssp EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred EEEEEEEEEECCCCC----CCCCEEEEEEECCCCCCCCCEEEEEEEECCEECCEECCCEEEEEECCCCCCCEEEEEEECC
T ss_conf 799999981179999----9996899999876787775279788774873641580658698861777416999999999
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCC-CCCCEEEEEEEEE
Q ss_conf 79999885215999992025687741059985565556-6541269999972
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQ-SAQSKVHLRIFLE 657 (1024)
Q Consensus 607 d~~~~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~g~l~l~i~~~ 657 (1024)
| |++||++.++|..+..|. -|++|.+..++ ...+.|.+.+.++
T Consensus 78 d-----~~~lG~~~ipl~~l~~Gy---R~vpL~~~~g~~l~~~~L~v~i~~~ 121 (122)
T d2zkmx2 78 G-----NKFLGHRIIPINALNSGY---HHLCLHSESNMPLTMPALFIFLEMK 121 (122)
T ss_dssp T-----TEEEEEEEEEGGGBCCEE---EEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred C-----CCEEEEEEEECCCCCCCC---EEEECCCCCCCCCCCCEEEEEEEEE
T ss_conf 9-----999999998932176776---6999159992999886699999998
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.9e-14 Score=96.90 Aligned_cols=108 Identities=24% Similarity=0.463 Sum_probs=77.1
Q ss_pred CEEEEEEEEEECCC--CCCCEEEEEEC------CEEEEEEC--CCCCCCCEEEEE-EEEE-EECCCCCEEEEEEEECCCC
Q ss_conf 48999999822189--99949999998------93876106--158999959449-9999-8449997599999953889
Q 001703 4 TRLYVYVLQGQDLL--AKDSYVKVQIG------KHKSKSRI--LKNNSNPVWNEE-FVFR-VHNIDDEELVVSVFQHNDD 71 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~--~~dpyv~i~l~------~~~~kT~v--~~~t~nP~WnE~-f~f~-v~~~~~~~L~i~V~d~d~~ 71 (1024)
.+|.|+|++|++|+ ..||||+|.+. ..+.+|++ .+|++||+|||+ |.|. +..+....|+|.|||++
T Consensus 1 ~tl~V~Visaq~L~~~~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~d-- 78 (122)
T d2zkmx2 1 TTLSITVISGQFLSERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG-- 78 (122)
T ss_dssp EEEEEEEEEEESCCSSCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT--
T ss_pred CEEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCEECCEECCCEEEEEECCCCCCCEEEEEEECCC--
T ss_conf 979999998117999999968999998767877752797887748736415806586988617774169999999999--
Q ss_pred CCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEE
Q ss_conf 9988988971298998686433437888997789833387779899634199999999
Q 001703 72 SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 72 ~~f~~~~d~~lG~~~i~l~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~l~l~~ 129 (1024)
|++||++.+|+..+.. +.+|.+|.+. .++ .-..+.|.+.+.+
T Consensus 79 -------~~~lG~~~ipl~~l~~------GyR~vpL~~~-~g~--~l~~~~L~v~i~~ 120 (122)
T d2zkmx2 79 -------NKFLGHRIIPINALNS------GYHHLCLHSE-SNM--PLTMPALFIFLEM 120 (122)
T ss_dssp -------TEEEEEEEEEGGGBCC------EEEEEEEECT-TCC--EEEEEEEEEEEEE
T ss_pred -------CCEEEEEEEECCCCCC------CCEEEECCCC-CCC--CCCCCEEEEEEEE
T ss_conf -------9999999989321767------7669991599-929--9988669999999
|
| >d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: PH domain-like barrel superfamily: PH domain-like family: VPS36 N-terminal domain-like domain: Vacuolar protein sorting protein 36, VPS36 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.43 E-value=0.33 Score=20.46 Aligned_cols=53 Identities=19% Similarity=0.330 Sum_probs=37.7
Q ss_pred CCCCEEEEECEEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCEEEEEE
Q ss_conf 5421566522899992137973799994354026686366543359991799993
Q 001703 717 LQGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILW 771 (1024)
Q Consensus 717 ~~G~lyis~~~~cF~s~~~g~~~~~~i~~~di~~i~k~~~~~~~~~~~~i~i~~~ 771 (1024)
..|++|+|.+.|||-.........+.+|+..|.+++-..+-+. .+|-|.+.+.
T Consensus 43 ~~G~l~LTshRiI~v~~~~~~~~S~slpL~~i~~~e~~~~~~~--ss~KI~l~l~ 95 (130)
T d2caya1 43 QRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSGFLT--RSPRLILFFK 95 (130)
T ss_dssp SSEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEECSSSS--SSCEEEEEES
T ss_pred CCCEEEEEEEEEEEECCCCCCEEEEEEEHHHEEEEEEECCCCC--CCCEEEEEEC
T ss_conf 5755998732799816999741489868366047689745557--8970899857
|
| >d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: STAR domain domain: Cholesterol-regulated Start protein 4 (Stard4). species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.90 E-value=0.62 Score=18.92 Aligned_cols=142 Identities=9% Similarity=-0.012 Sum_probs=74.4
Q ss_pred CCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCC-CCEEEEEEEEECCCCCCC-CC-EECEEEEEEECCC
Q ss_conf 23333679776763135870478999880982326666534899-943899999972345678-75-3247999920489
Q 001703 856 YNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKP-GVCERHLSYRFNRHVSIF-GG-EVTCTQQKSPLAS 932 (1024)
Q Consensus 856 ~~~~~~~~~~~~f~lF~~~~~~~~~~~~~g~~~i~~~~W~~~~~-~~~~R~~~y~~n~~~~~~-~~-~~~~~Q~~~~~~~ 932 (1024)
...+++++++.+++++.|.....++... +...+..+. +...+.+.|..+....|. .. .....+... ..
T Consensus 48 ~~~~i~~~~~~v~~~l~d~~~~~~Wd~~-------~~~~~~le~~~~~~~i~~~~~~~~~~~~v~~RD~v~~~~~~--~~ 118 (199)
T d1jssa_ 48 AQGVMDDVVNNVIDHIRPGPWRLDWDRL-------MTSLDVLEHFEENCCVMRYTTAGQLLNIISPREFVDFSYTV--GY 118 (199)
T ss_dssp EEEEESSCHHHHHHHHSSSTTHHHHCSS-------EEEEEEEEECSTTEEEEEEEECCBTTTTBCCEEEEEEEEEE--EE
T ss_pred EEEEECCCHHHHHHHHHCHHHHHHCCCC-------HHEEEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEEEE--EC
T ss_conf 9999679999999988395555300555-------12199999728993999999833478876870899999999--86
Q ss_pred CCCEEEEEEEECCCCCCCCCEE----EEEEEEEEECCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9748999988049999999159----999999995399999129999999999643420335333168968999999999
Q 001703 933 GEGWIVNEVMSLHDVPFDDHFR----VHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIE 1008 (1024)
Q Consensus 933 ~~~~vi~~~~~~~dVPygd~F~----v~~r~~i~~~~~~~~~c~l~v~~~V~f~Kst~~K~~Ie~~~~~~~~~~~~~~~~ 1008 (1024)
+++.++..+.. ++.|...-+. ....|.|++.+.++++|++...+.++..++ .=+..|.+...+.+.+.++.|-+
T Consensus 119 ~~~~~~~~~~~-~~~p~~~~~VR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP~~lvn~~~~~~~~~~~~~Lr~ 196 (199)
T d1jssa_ 119 EEGLLSCGVSV-EWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM-IPQSAVDTAMASTLANFYSDLRK 196 (199)
T ss_dssp TTEEEEEEEEC-CCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSC-CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEC-CCCCCCCCEEEEEEEEEEEEEEECCCCCCCEEEEEEEECCCCCC-CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99579999853-87899984698799611489998689987089999997288987-72999999999879999999998
|
| >d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: TBP-like superfamily: Bet v1-like family: STAR domain domain: Lipid transport domain of Mln64 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.96 E-value=0.82 Score=18.21 Aligned_cols=147 Identities=8% Similarity=-0.003 Sum_probs=73.7
Q ss_pred CCCCCCCCHHHHHH-HCCCCHHHHHHHHHHCCCCEEECCCCCCCC-CCEEEEEEEEECCCCC-CCCC-EECEEEEEEECC
Q ss_conf 23333679776763-135870478999880982326666534899-9438999999723456-7875-324799992048
Q 001703 856 YNAELPISVKALME-MFDGGKLEHQVMEKSGCHNYVTTPWDLVKP-GVCERHLSYRFNRHVS-IFGG-EVTCTQQKSPLA 931 (1024)
Q Consensus 856 ~~~~~~~~~~~~f~-lF~~~~~~~~~~~~~g~~~i~~~~W~~~~~-~~~~R~~~y~~n~~~~-~~~~-~~~~~Q~~~~~~ 931 (1024)
...+++++++.+|. ++.|.....+ .|-.+..++..+. +.....+.|....... |... .....+ ... .
T Consensus 56 ~~~~i~~~~~~v~~~~~~d~e~~~~-------Wd~~~~~~~ile~~~~~~~i~~~~~~~~~~~~vs~RD~v~~~-~~~-~ 126 (214)
T d1em2a_ 56 LKTFLPCPAELVYQEVILQPERMVL-------WNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNVR-RIE-R 126 (214)
T ss_dssp EEEEESSCHHHHHHHTTTCHHHHTT-------TCTTEEEEEEEEEETTTEEEEEEEECCBTTTTBCCEEEEEEE-EEE-E
T ss_pred EEEEEECCHHHHHHHHHHCHHHHHH-------HHHHHHHEEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEE-EEE-E
T ss_conf 9999918999999999859587988-------887776458889817996089999536688877784899999-999-7
Q ss_pred CCCCEEEE-EEEECCCCCC-CCCEEEE---EEEEEEECCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99748999-9880499999-9915999---99999953999991299999999996434203353331689689999999
Q 001703 932 SGEGWIVN-EVMSLHDVPF-DDHFRVH---FRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEM 1006 (1024)
Q Consensus 932 ~~~~~vi~-~~~~~~dVPy-gd~F~v~---~r~~i~~~~~~~~~c~l~v~~~V~f~Kst~~K~~Ie~~~~~~~~~~~~~~ 1006 (1024)
+++++++. .....++.|- .++-+++ ..|+|++.+.++++|++.....++..++ .=+..+.....+.+.+.++.|
T Consensus 127 ~~~~~~~~~~s~~~~~~p~~~~~vR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP~~lvn~~~~~~~~~~~~~L 205 (214)
T d1em2a_ 127 RRDRYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR-LPRYLIHQSLAATMFEFAFHL 205 (214)
T ss_dssp CSSEEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEECCCCCCCCCCEEEEEEEEEEEEEEECCCCCCEEEEEEEEEECCCCC-CCHHHHHHHHHHHHHHHHHHH
T ss_conf 5990999999403554367787299999766699998778898089999997088997-879999999998699999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q 001703 1007 IELVER 1012 (1024)
Q Consensus 1007 ~~~~~~ 1012 (1024)
-+.+++
T Consensus 206 rk~~~k 211 (214)
T d1em2a_ 206 RQRISE 211 (214)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999998
|
| >d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: PH domain-like barrel superfamily: PH domain-like family: VPS36 N-terminal domain-like domain: Vacuolar protein sorting protein 36, VPS36 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.67 E-value=0.91 Score=17.95 Aligned_cols=93 Identities=14% Similarity=0.116 Sum_probs=52.1
Q ss_pred CCCCEEEEECEEEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCC-CCEEEEEECCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 54215665228999921379737999943540266863665433599-91799993067756678742237788059999
Q 001703 717 LQGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGS-PSLVIILWKGRGLDARHGAKSQDEEGRLRFYF 795 (1024)
Q Consensus 717 ~~G~lyis~~~~cF~s~~~g~~~~~~i~~~di~~i~k~~~~~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~F 795 (1024)
..|++|+|.+.|+|-..... ...+.||+..|.+++...+.+ +. |-|.+.+.....--+.+ ..........|..|
T Consensus 34 ~~G~l~LTthRli~~~~~~~-~~s~~lpl~~i~~~e~~~~~f---g~s~ki~l~l~~~~~~~~~g-p~~~s~~~~~KLsF 108 (129)
T d2hthb1 34 DAGTLLLSTHRLIWRDQKNH-ECCMAILLSQIVFIEEQAAGI---GKSAKIVVHLHPAPPNKEPG-PFQSSKNSYIKLSF 108 (129)
T ss_dssp CCEEEEEESSEEEEEETTCC-SCCEEEEGGGEEEEEEECCTT---SSCCEEEEEECCCCCCSSSC-CCSTTSCCEEEEEE
T ss_pred CCEEEEEEECEEEEECCCCC-CEEEEEEHHHCEEEEEECCCC---CCCCEEEEEECCCCCCCCCC-CCCCCCCEEEEEEE
T ss_conf 33289998245999459997-668997748802336885532---68953899976677677688-76767755999997
Q ss_pred EEECCHHHHHHHHHHHHHHC
Q ss_conf 84058158999999999816
Q 001703 796 QSFVSFNDASRTIMALWRSR 815 (1024)
Q Consensus 796 ~sf~~rd~~~~~l~~~~~~~ 815 (1024)
.+=- -++-++.+...++.+
T Consensus 109 k~GG-~~eF~~~l~~al~~k 127 (129)
T d2hthb1 109 KEHG-QIEFYRRLSEEMTQR 127 (129)
T ss_dssp TTSC-HHHHHHHHHHHHHHC
T ss_pred CCCC-HHHHHHHHHHHHHHC
T ss_conf 8888-789999999999866
|