Citrus Sinensis ID: 001719

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020-
Protein Sequence
MCGSKRVWVSELIFILLVVKGWWIEGCLEQERSALLQLKHFFNDDQRLQNWVDAADDENYSDCCQWERVECNKTTGRVIKLDLGDIKNRKNRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTATPEAYTENKEGDSLIDMDSFLITFTVSYGIVIIGIIGVLCINPYWRRRWFYLVEVCMTSCYYFVADNLIPRRFYRGWM
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEccccccEEEEEccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHccccccccEEEcccccccccccccHHHHccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccccEEEccccccccccccHHHcccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccEEEccccccccccccEEEccccccEEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccEEEccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEccccccEEcccHHHHccccccEEEccccccccccHHHHHccccccEEEccccEEEEEccccccccccccEEEccccccccccccHHHcccccccccccccccccccccccccccccccccccccccEEEEEEEEcccEEEEccccccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcEEEEEEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEcccccEEEEEEccccccccccccccccccHHHcccHcccEEEcccccccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHHcccccEEEcccccccccccHHHHHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHccHHHHHHHHHHHHHHccccccccccHHHccccccEEEEcccccccccccHHHHHccccccEEEcccccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEccccccccccccHHHccccccEEEEEccccccccccccccccccHHHHccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHHHHcccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHcccccEEEEcccccccccccccHccccccEEEEEccccccccccccHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHcccccEEEEccccccEEcccHHccccccEEEEEccccccccccHHHHcccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHccHHHHHHHccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHEEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccHHHcccccccccccccccccccccccccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcccccc
Coil and Loop (DISEMBL)
MCGSKRVWVSELIFILLVVKGWWIEGCLEQERSALLQLKHFFNDDQRLQNWvdaaddenysdccQWERVECNKTTGRVIKldlgdiknrknrkserhlnaslftpfqqlesldlswnniagcvenegveRLSRLNNLKfllldsnyfnnsifsslgglsslrILSLAdnrlngsidikgldslsnleeldmsynaidnlvvpqglerlstlsnlKFLRLDYNSFNSSIFsslgglsslrilsladnrfngsidikgkqassilrvpSFVDLVSLsswsvgintgldslsnleeldmtnnainnlvvpkdyrcLRKLNTLYLGgiamidgskvlqsigslpslkTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLkgalhgqdggtfpkflyhqhdlknvdlshlnlsgkfpnwlvenNTNLKTLLLANnslfgsfrmpihshqklatldvstnffrghiPVEIGTYLSGLmdlnlsrnafngsipssfADMKMLKSLDISYnqltgeipdrmaigCFSLEILALSNNnlqghifskkfnlTNLMRLQLDGNKFIGEIPKSLSKCYLlgglylsdnhlsgkiprwlgnlsalediimpnnnlegpipiefcQLDYLKildlsnntifgtlpscfspayieEIHLSKNKIEGRLESIIHYSPYLMTLDLsynclhgsiptwidrlpQLSYLLLANnyiegeipiqicqlkeVRLIdlshnnlsghippclvntalnegyheavapissssddastyvlpsvapngspigeeetVQFTTKNMSYYYQGRILMSMSGidlscnkltgeiptqiGYLTRIRALNlshnnltgtipttfsnlkQIESLDLSYNlllgkippqlivLNTLAVFRVANnnlsgkipdrvaqfstfeedsyegnpflcglplskscddnglttatpeaytenkegdslidmDSFLITFTVSYGIVIIGIIGVLcinpywrrRWFYLVEVCMTSCyyfvadnliprrfyrgwm
Flexible Loop (DISEMBL)
mcgskrvwVSELIFILLVVKGWWIEGCLEQERSALLQLKHFFNDDQRLQNWVDAADDENYSDCCQWervecnkttgrvikldlgdiknrknrkserhlnaslfTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIdikgkqassilRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAInnlvvpkdyrCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLpsvapngspigeeetvqFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTATPEAYTENKEGDSLIDMDSFLITFTVSYGIVIIGIIGVLCINPYWRRRWFYLVEVCMTSCYyfvadnlipRRFYRGWM
Low Complexity Region (SEG)
MCGSKRVWVSELIFILLVVKGWWIEGCLEQERSALLQLKHFFNDDQRLQNWVDAADDENYSDCCQWERVECNKTTGRVIKLDLGDIKNRKNRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVErlsrlnnlkfllldsnYFNNsifsslgglsslrilslADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYnsfnssifsslgglsslrilslADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVEnntnlktlllannslFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTATPEAYTENKEGDSLIDMDSFLITFTVSYgiviigiigvLCINPYWRRRWFYLVEVCMTSCYYFVADNLIPRRFYRGWM
Disordered region (IsUnstruct)
*****RVWVSELIFILLVVKGWWIEGCLEQERSALLQLKHFFNDDQRLQNWVDAADDENYSDCCQWERVECNKTTGRVIKLDLGDIK**********LNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVA****************************TVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDD**L**************DSLIDMDSFLITFTVSYGIVIIGIIGVLCINPYWRRRWFYLVEVCMTSCYYFVADNLIPRRFYRGW*
Disordered Region (DISOPRED)
*****RV*VSELIFILLVVKGWWIEGCLEQERSALLQLKHFFNDDQRLQNWVDAADDENYSDCCQWERVECNKTTGRVIKLDLGDIKNRKNRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP*****************************MDSFLITFTVSYGIVIIGIIGVLCINPYWRRRWFYLVEVCMTSCYYFVADNLIPRRFYRGWM
Disordered Region (DISEMBL)
MCGSKRVWVSELIFILLVVKGWWIEGCLEQERSALLQLKHFFNDDQRLQNWVDAADDENYSDCCQWERVECNKTTGRVIKLDLGDIKNRKNRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTATPEAYTENKEGDSLIDMDSFLITFTVSYGIVIIGIIGVLCINPYWRRRWFYLVEVCMTSCYYFVADNLIPRRFYRGWM
Disordered Region (DISPRO)
*CGSKRVWVSELIFILLVVKGWWIEGCLEQERSALLQLKHFFNDDQRLQNWVDAADDENYSDCCQWERVECNKTTGRVIKLDLGDIKNRKNRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTATPEAYTENKEGDSLIDMDSFLITFTVSYGIVIIGIIGVLCINPYWRRRWFYLVEVCMTSCYYFVADNLIPRRFYRGWM
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCGSKRVWVSELIFILLVVKGWWIEGCLEQERSALLQLKHFFNDDQRLQNWVDAADDENYSDCCQWERVECNKTTGRVIKLDLGDIKNRKNRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTATPEAYTENKEGDSLIDMDSFLITFTVSYGIVIIGIIGVLCINPYWRRRWFYLVEVCMTSCYYFVADNLIPRRFYRGWM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1021	2.2.26 [Sep-21-2011]
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.790	0.644	0.298	2e-67
Q9FL28	1173	LRR receptor-like serine/	no	no	0.700	0.609	0.294	1e-63
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.829	0.678	0.282	4e-63
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.748	0.640	0.283	5e-61
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.535	0.478	0.299	3e-57
Q9C9H7	847	Receptor-like protein 12	no	no	0.643	0.775	0.296	3e-57
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.655	0.554	0.304	5e-56
Q9SHI3	729	Receptor-like protein 2 O	no	no	0.534	0.748	0.319	1e-55
Q9LHP4	1141	Receptor-like protein kin	no	no	0.573	0.513	0.314	9e-55
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.655	0.554	0.301	1e-54

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  258 bits (659), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 278/931 (29%), Positives = 429/931 (46%), Gaps = 124/931 (13%)

Query: 34  ALLQLKHFF----NDDQRLQNWVDAADDENYSDCCQWERVECNKTTGR-VIKLDLGDIKN 88
            LL+LK+ F     ++  L++W     +      C W  V C    GR +I L+L  +  
Sbjct: 32  TLLELKNSFITNPKEEDVLRDW-----NSGSPSYCNWTGVTCG---GREIIGLNLSGLG- 82

Query: 89  RKNRKSERHLNASL---FTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSN 145
                    L  S+      F  L  +DLS N + G +        +  ++L+ L L SN
Sbjct: 83  ---------LTGSISPSIGRFNNLIHIDLSSNRLVGPIP---TTLSNLSSSLESLHLFSN 130

Query: 146 YFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGL 205
             +  I S LG L +L+ L L DN LNG+I  +   +L NL+ L ++   +  L+     
Sbjct: 131 LLSGDIPSQLGSLVNLKSLKLGDNELNGTIP-ETFGNLVNLQMLALASCRLTGLIP---- 185

Query: 206 ERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRV 265
            R   L  L+ L L  N     I + +G  +SL + + A NR NGS+  +          
Sbjct: 186 SRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAE---------- 235

Query: 266 PSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIA 325
                              L+ L NL+ L++ +N+ +   +P     L  +  L L G  
Sbjct: 236 -------------------LNRLKNLQTLNLGDNSFSG-EIPSQLGDLVSIQYLNLIGNQ 275

Query: 326 MIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQS 385
           +     + + +  L +L+TL L   N  G ++++E      LE L+L K+ L  S     
Sbjct: 276 L--QGLIPKRLTELANLQTLDLSSNNLTG-VIHEEFWRMNQLEFLVLAKNRLSGSLPKTI 332

Query: 386 IASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVEN 445
            ++ TSLK L +    L G +        P  + +   LK +DLS+  L+G+ P+ L + 
Sbjct: 333 CSNNTSLKQLFLSETQLSGEI--------PAEISNCQSLKLLDLSNNTLTGQIPDSLFQL 384

Query: 446 NTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSR 505
              L  L L NNSL G+    I +   L    +  N   G +P EIG +L  L  + L  
Sbjct: 385 -VELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIG-FLGKLEIMYLYE 442

Query: 506 NAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKK 565
           N F+G +P    +   L+ +D   N+L+GEIP  +                         
Sbjct: 443 NRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIG------------------------ 478

Query: 566 FNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMP 625
             L +L RL L  N+ +G IP SL  C+ +  + L+DN LSG IP   G L+ALE  ++ 
Sbjct: 479 -RLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIY 537

Query: 626 NNNLEGPIPIEFCQLDYLKILDLSNNTIFGTL-PSCFSPAYIEEIHLSKNKIEGRLESII 684
           NN+L+G +P     L  L  ++ S+N   G++ P C S +Y+    +++N  EG +   +
Sbjct: 538 NNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYL-SFDVTENGFEGDIPLEL 596

Query: 685 HYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLS 744
             S  L  L L  N   G IP    ++ +LS L ++ N + G IP+++   K++  IDL+
Sbjct: 597 GKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLN 656

Query: 745 HNNLSGHIP------PCLVNTALNEGYHEAVAPISSSS-DDASTYVLPSVAPNGSPIGEE 797
           +N LSG IP      P L    L+        P    S  +  T  L   + NGS   E 
Sbjct: 657 NNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEI 716

Query: 798 ETVQ-FTTKNMSYYYQGRILMSMSG-------IDLSCNKLTGEIPTQIGYLTRIR-ALNL 848
             +Q     N+        L S  G       + LS N LTGEIP +IG L  ++ AL+L
Sbjct: 717 GNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDL 776

Query: 849 SHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDR 908
           S+NN TG IP+T S L ++ESLDLS+N L+G++P Q+  + +L    ++ NNL GK+   
Sbjct: 777 SYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLK-- 834

Query: 909 VAQFSTFEEDSYEGNPFLCGLPLSKSCDDNG 939
             QFS ++ D++ GN  LCG PLS  C+  G
Sbjct: 835 -KQFSRWQADAFVGNAGLCGSPLSH-CNRAG 863

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  245 bits (625), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 250/849 (29%), Positives = 374/849 (44%), Gaps = 134/849 (15%)

Query: 64  CQWERVECNKTTGRVIKLDLGDIKNRKNRKSERHLNASL---FTPFQQLESLDLSWNNIA 120
           C W  + C+ +TG V+ + L           E+ L   L         L+ LDL+ N+  
Sbjct: 61  CNWTGITCD-STGHVVSVSL----------LEKQLEGVLSPAIANLTYLQVLDLTSNSFT 109

Query: 121 GCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGL 180
           G +  E + +L+ LN L   L   NYF+ SI S +  L ++  L L +N L+G +     
Sbjct: 110 GKIPAE-IGKLTELNQLILYL---NYFSGSIPSGIWELKNIFYLDLRNNLLSGDVP---- 161

Query: 181 DSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRI 240
                                    E +   S+L  +  DYN+    I   LG L  L++
Sbjct: 162 -------------------------EEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQM 196

Query: 241 LSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNA 300
              A N   GSI +                       S+G      +L+NL +LD++ N 
Sbjct: 197 FVAAGNHLTGSIPV-----------------------SIG------TLANLTDLDLSGNQ 227

Query: 301 INNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQE 360
           +    +P+D+  L  L +L L    +++G  +   IG+  SL  L L      G I   E
Sbjct: 228 LTG-KIPRDFGNLLNLQSLVLTE-NLLEGD-IPAEIGNCSSLVQLELYDNQLTGKIP-AE 283

Query: 361 LHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYH 420
           L N   L+ L + K+ L  S +  S+   T L +L +    L G +  + G     FL  
Sbjct: 284 LGNLVQLQALRIYKNKL-TSSIPSSLFRLTQLTHLGLSENHLVGPISEEIG-----FL-- 335

Query: 421 QHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVST 480
              L+ + L   N +G+FP   + N  NL  L +  N++ G     +     L  L    
Sbjct: 336 -ESLEVLTLHSNNFTGEFPQS-ITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHD 393

Query: 481 NFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRM 540
           N   G IP  I +  +GL  L+LS N   G IP  F  M  L  + I  N  TGEIPD +
Sbjct: 394 NLLTGPIPSSI-SNCTGLKLLDLSHNQMTGEIPRGFGRMN-LTFISIGRNHFTGEIPDDI 451

Query: 541 AIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYL 600
              C +LE L++++NNL G +      L  L  LQ+  N   G IP+ +     L  LYL
Sbjct: 452 -FNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYL 510

Query: 601 SDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSC 660
             N  +G+IPR + NL+ L+ + M +N+LEGPIP E   +  L +LDLSNN   G +P+ 
Sbjct: 511 HSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPAL 570

Query: 661 FSP-AYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIP-TWIDRLPQLS-YL 717
           FS    +  + L  NK  G + + +     L T D+S N L G+IP   +  L  +  YL
Sbjct: 571 FSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYL 630

Query: 718 LLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSD 777
             +NN + G IP ++ +L+ V+ IDLS+N  SG IP  L                     
Sbjct: 631 NFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSL--------------------- 669

Query: 778 DASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGI---DLSCNKLTGEIP 834
            A   V               T+ F+  N+S +    +   M  I   +LS N  +GEIP
Sbjct: 670 QACKNVF--------------TLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIP 715

Query: 835 TQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVF 894
              G +T + +L+LS NNLTG IP + +NL  ++ L L+ N L G +P   +  N  A  
Sbjct: 716 QSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASD 775

Query: 895 RVANNNLSG 903
            + N +L G
Sbjct: 776 LMGNTDLCG 784

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  244 bits (622), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 290/1028 (28%), Positives = 446/1028 (43%), Gaps = 181/1028 (17%)

Query: 26   GCLEQERSALLQLKHFF----NDDQRLQNWVDAADDENYSDCCQWERVECNKTT-GRVIK 80
            G +  +   LL++K        +D  L+ W   +D+ NY   C W  V C+ T   RVI 
Sbjct: 21   GIINNDLQTLLEVKKSLVTNPQEDDPLRQW--NSDNINY---CSWTGVTCDNTGLFRVIA 75

Query: 81   LDLGDIKNRKNRKSERHLNASL---FTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNL 137
            L+L  +           L  S+   F  F  L  LDLS NN+ G +       LS L +L
Sbjct: 76   LNLTGLG----------LTGSISPWFGRFDNLIHLDLSSNNLVGPIPTA----LSNLTSL 121

Query: 138  KFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAID 197
            + L L SN     I S LG L ++R L + DN L G I     ++L NL  L M   A  
Sbjct: 122  ESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDIP----ETLGNLVNLQMLALASC 177

Query: 198  NLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGK 257
             L  P    +L  L  ++ L L  N     I + LG  S L + + A+N  NG+I  +  
Sbjct: 178  RLTGPIP-SQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAE-- 234

Query: 258  QASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLN 317
                                       L  L NLE L++ NN++    +P     + +L 
Sbjct: 235  ---------------------------LGRLENLEILNLANNSLTG-EIPSQLGEMSQLQ 266

Query: 318  TLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDL 377
              YL  +A      + +S+  L +L+TL L   N  G I  +E  N + L +L+L  + L
Sbjct: 267  --YLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIP-EEFWNMSQLLDLVLANNHL 323

Query: 378  HVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGK 437
              S L +SI S  +    ++   VL G    Q  G  P  L     LK +DLS+ +L+G 
Sbjct: 324  SGS-LPKSICSNNT----NLEQLVLSGT---QLSGEIPVELSKCQSLKQLDLSNNSLAGS 375

Query: 438  FPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSG 497
             P  L E    L  L L NN+L G+    I +   L  L +  N   G +P EI + L  
Sbjct: 376  IPEALFEL-VELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEI-SALRK 433

Query: 498  LMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNL 557
            L  L L  N F+G IP    +   LK +D+  N   GEIP   +IG              
Sbjct: 434  LEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPP--SIGRL------------ 479

Query: 558  QGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLS 617
                  K+ NL     L L  N+ +G +P SL  C+ L  L L+DN LSG IP   G L 
Sbjct: 480  ------KELNL-----LHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLK 528

Query: 618  ALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTL-PSCFSPAYI---------- 666
             LE +++ NN+L+G +P     L  L  ++LS+N + GT+ P C S +Y+          
Sbjct: 529  GLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFE 588

Query: 667  -------------EEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQ 713
                         + + L KN++ G++   +     L  LD+S N L G+IP  +    +
Sbjct: 589  DEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKK 648

Query: 714  LSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVN-----------TALN 762
            L+++ L NN++ G IP  + +L ++  + LS N     +P  L N            +LN
Sbjct: 649  LTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLN 708

Query: 763  EGYHEAVAPISSSS-----DDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILM 817
                + +  + + +      +  +  LP      S + E    + +         G++  
Sbjct: 709  GSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQD 768

Query: 818  SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 877
              S +DLS N  TG+IP+ IG L+++  L+LSHN LTG +P +  ++K +  L++S+   
Sbjct: 769  LQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSF--- 825

Query: 878  LGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDD 937
                                 NNL GK+     QFS +  DS+ GN  LCG PLS+ C+ 
Sbjct: 826  ---------------------NNLGGKLK---KQFSRWPADSFLGNTGLCGSPLSR-CN- 859

Query: 938  NGLTTATPEAYTENKEGDSLIDMDSFLITFTVSYGIVIIGIIGVLCINPYWRRRWFYLVE 997
                       + NK+    +   S +I   +S  +  IG++ +L I  ++++R  +  +
Sbjct: 860  --------RVRSNNKQQG--LSARSVVIISAIS-ALTAIGLM-ILVIALFFKQRHDFFKK 907

Query: 998  VCMTSCYY 1005
            V   S  Y
Sbjct: 908  VGHGSTAY 915

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  236 bits (603), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 249/879 (28%), Positives = 398/879 (45%), Gaps = 115/879 (13%)

Query: 64  CQWERVECNKTTGRVIKLDLGDIKNRKNRKSERHLNASLFTPFQQLESLDLSWNNIAGCV 123
           C W  V C    GRV  L L  +  R     E        +  + L  L L+ N  +G +
Sbjct: 55  CDWVGVTC--LLGRVNSLSLPSLSLRGQIPKE-------ISSLKNLRELCLAGNQFSGKI 105

Query: 124 ENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSL 183
             E    +  L +L+ L L  N     +   L  L  L  L L+DN  +GS+      SL
Sbjct: 106 PPE----IWNLKHLQTLDLSGNSLTGLLPRLLSELPQLLYLDLSDNHFSGSLPPSFFISL 161

Query: 184 SNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSL 243
             L  LD+S N++   + P+    +  LSNL  L +  NSF+  I S +G +S L+  + 
Sbjct: 162 PALSSLDVSNNSLSGEIPPE----IGKLSNLSNLYMGLNSFSGQIPSEIGNISLLKNFAA 217

Query: 244 ADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINN 303
               FNG +  +                             +  L +L +LD++ N +  
Sbjct: 218 PSCFFNGPLPKE-----------------------------ISKLKHLAKLDLSYNPLK- 247

Query: 304 LVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHN 363
             +PK +  L  L+ L L    +I    +   +G+  SLK+L L F +  G +       
Sbjct: 248 CSIPKSFGELHNLSILNLVSAELI--GLIPPELGNCKSLKSLMLSFNSLSGPL------- 298

Query: 364 FTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHD 423
                        L +S++   + +F+              A   Q  G+ P ++     
Sbjct: 299 ------------PLELSEI--PLLTFS--------------AERNQLSGSLPSWMGKWKV 330

Query: 424 LKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFF 483
           L ++ L++   SG+ P+  +E+   LK L LA+N L GS    +     L  +D+S N  
Sbjct: 331 LDSLLLANNRFSGEIPHE-IEDCPMLKHLSLASNLLSGSIPRELCGSGSLEAIDLSGNLL 389

Query: 484 RGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIG 543
            G I  E+    S L +L L+ N  NGSIP     + ++ +LD+  N  TGEIP  +   
Sbjct: 390 SGTIE-EVFDGCSSLGELLLTNNQINGSIPEDLWKLPLM-ALDLDSNNFTGEIPKSLWKS 447

Query: 544 CFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDN 603
              +E  A S N L+G++ ++  N  +L RL L  N+  GEIP+ + K   L  L L+ N
Sbjct: 448 TNLMEFTA-SYNRLEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNAN 506

Query: 604 HLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSP 663
              GKIP  LG+ ++L  + + +NNL+G IP +   L  L+ L LS N + G++PS  S 
Sbjct: 507 MFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPS- 565

Query: 664 AYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNY 723
           AY  +I +        L  + H+  +    DLSYN L G IP  +     L  + L+NN+
Sbjct: 566 AYFHQIEMPD------LSFLQHHGIF----DLSYNRLSGPIPEELGECLVLVEISLSNNH 615

Query: 724 IEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYV 783
           + GEIP  + +L  + ++DLS N L+G IP  + N+   +G + A       ++  + ++
Sbjct: 616 LSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLA-------NNQLNGHI 668

Query: 784 LPSVAPNGSPIGEEETVQFTTKNMSYYYQGRI--LMSMSGIDLSCNKLTGEIPTQIGYLT 841
             S    GS +     +  T   +       +  L  ++ +DLS N L+GE+ +++  + 
Sbjct: 669 PESFGLLGSLV----KLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGELSSELSTME 724

Query: 842 RIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNL 901
           ++  L +  N  TG IP+   NL Q+E LD+S NLL G+IP ++  L  L    +A NNL
Sbjct: 725 KLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNL 784

Query: 902 SGKIP-DRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNG 939
            G++P D V Q  +  +    GN  LCG  +   C   G
Sbjct: 785 RGEVPSDGVCQDPS--KALLSGNKELCGRVVGSDCKIEG 821

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  224 bits (571), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 199/664 (29%), Positives = 293/664 (44%), Gaps = 117/664 (17%)

Query: 412 GTFPKFLYHQH-DLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFG---SFRMPI 467
           GT P+  + ++ +L ++ LS+ N +GK PN L  ++  L+TL L+ N++ G      +P+
Sbjct: 141 GTLPENFFSKYSNLISITLSYNNFTGKLPNDLFLSSKKLQTLDLSYNNITGPISGLTIPL 200

Query: 468 HSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDI 527
            S   +  LD S N   G+I   +    + L  LNLS N F+G IP SF ++K+L+SLD+
Sbjct: 201 SSCVSMTYLDFSGNSISGYISDSL-INCTNLKSLNLSYNNFDGQIPKSFGELKLLQSLDL 259

Query: 528 SYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPK 587
           S+N+LTG IP  +   C SL+ L LS NN                        F G IP+
Sbjct: 260 SHNRLTGWIPPEIGDTCRSLQNLRLSYNN------------------------FTGVIPE 295

Query: 588 SLSKCYLLGGLYLSDNHLSGKIPRW-LGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKIL 646
           SLS C  L  L LS+N++SG  P   L +  +L+ +++ NN + G  P        L+I 
Sbjct: 296 SLSSCSWLQSLDLSNNNISGPFPNTILRSFGSLQILLLSNNLISGDFPTSISACKSLRIA 355

Query: 647 DLSNNTIFGTLPS--CFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLS-------- 696
           D S+N   G +P   C   A +EE+ L  N + G +   I     L T+DLS        
Sbjct: 356 DFSSNRFSGVIPPDLCPGAASLEELRLPDNLVTGEIPPAISQCSELRTIDLSLNYLNGTI 415

Query: 697 ----------------YNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQI--CQ---- 734
                           YN + G IP  I +L  L  L+L NN + GEIP +   C     
Sbjct: 416 PPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIPPEFFNCSNIEW 475

Query: 735 ------------------LKEVRLIDLSHNNLSGHIPP------CLVNTALNEGYHEAVA 770
                             L  + ++ L +NN +G IPP       LV   LN  +     
Sbjct: 476 VSFTSNRLTGEVPKDFGILSRLAVLQLGNNNFTGEIPPELGKCTTLVWLDLNTNHLTGEI 535

Query: 771 PISSSSDDASTYVLPSVAPNG--------------------SPIGEEETVQ---FTTKNM 807
           P        S  +   ++ N                     S I  E  +Q     + + 
Sbjct: 536 PPRLGRQPGSKALSGLLSGNTMAFVRNVGNSCKGVGGLVEFSGIRPERLLQIPSLKSCDF 595

Query: 808 SYYYQGRIL------MSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTF 861
           +  Y G IL       ++  +DLS N+L G+IP +IG +  ++ L LSHN L+G IP T 
Sbjct: 596 TRMYSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIALQVLELSHNQLSGEIPFTI 655

Query: 862 SNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYE 921
             LK +   D S N L G+IP     L+ L    ++NN L+G IP R  Q ST     Y 
Sbjct: 656 GQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNELTGPIPQR-GQLSTLPATQYA 714

Query: 922 GNPFLCGLPLSKSCDDNGLTTATPEAYTENKEGDSLID-MDSFLITFTVSYGIVIIGIIG 980
            NP LCG+PL +  + N    A  E     K G       +S ++   +S   V I I+ 
Sbjct: 715 NNPGLCGVPLPECKNGNNQLPAGTEEGKRAKHGTRAASWANSIVLGVLISAASVCILIVW 774

Query: 981 VLCI 984
            + +
Sbjct: 775 AIAV 778

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  224 bits (571), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 224/755 (29%), Positives = 338/755 (44%), Gaps = 98/755 (12%)

Query: 282 NTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLN--TLYLGGIAMIDGSKVLQSIGSL 339
           N+ L  L  L  LD+TN  +    +P     L  L    LY          ++  SIG+L
Sbjct: 103 NSSLFKLQYLRHLDLTNCNLYG-EIPSSLGNLSHLTLVNLYFNKFV----GEIPASIGNL 157

Query: 340 PSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRG 399
             L+ L L      G I +  L N + L  L L  + L V ++  SI     L+ LS+  
Sbjct: 158 NQLRHLILANNVLTGEIPSS-LGNLSRLVNLELFSNRL-VGKIPDSIGDLKQLRNLSLAS 215

Query: 400 CVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSL 459
             L G +        P  L +  +L ++ L+H  L G+ P   + N   L+ +   NNSL
Sbjct: 216 NNLIGEI--------PSSLGNLSNLVHLVLTHNQLVGEVPA-SIGNLIELRVMSFENNSL 266

Query: 460 FGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADM 519
            G+  +   +  KL+   +S+N F    P ++  +   L   ++S N+F+G  P S   +
Sbjct: 267 SGNIPISFANLTKLSIFVLSSNNFTSTFPFDMSIF-HNLEYFDVSYNSFSGPFPKSLLLI 325

Query: 520 KMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGN 579
             L+S+ +  NQ TG I          L+ L L  N L G I      L NL  L +  N
Sbjct: 326 PSLESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDISHN 385

Query: 580 KFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSAL-------------------- 619
            F G IP ++SK   L  L LS N+L G++P  L  L+ +                    
Sbjct: 386 NFTGAIPPTISKLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFENTSQEEALI 445

Query: 620 EDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFS--PAYIEEIHLSKNKIE 677
           E++ + +N+ +GPIP   C+L  L  LDLSNN   G++PSC       I+E++L  N   
Sbjct: 446 EELDLNSNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFS 505

Query: 678 GRLESIIHYSPYLMTLDLSYNCLHGSIP------------------------TWIDRLPQ 713
           G L  I   +  L++LD+S+N L G  P                        +W++ LP 
Sbjct: 506 GTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPS 565

Query: 714 LSYLLLANNYIEGEIPIQICQL--KEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAP 771
           L  L L +N   G +  +   +  + +R+ID+SHNN SG +PP          Y      
Sbjct: 566 LHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPY---------YFSNWKD 616

Query: 772 ISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTG 831
           +++ +++   Y+        S   E E V     +MS+    RI      ID S NK+ G
Sbjct: 617 MTTLTEEMDQYMTEFWRYADSYYHEMEMVN-KGVDMSF---ERIRRDFRAIDFSGNKING 672

Query: 832 EIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTL 891
            IP  +GYL  +R LNLS N  T  IP   +NL ++E+LD+S N L G+IP  L  L+ L
Sbjct: 673 NIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFL 732

Query: 892 AVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGL---TTATPEAY 948
           +    ++N L G +P R  QF   +  S+  NP L G  L   C D G    T+  PE  
Sbjct: 733 SYMNFSHNLLQGPVP-RGTQFQRQKCSSFLDNPGLYG--LEDICRDTGALNPTSQLPEDL 789

Query: 949 TENKEGDSLIDMDSFLITFTVSYGIVIIGIIGVLC 983
           +E +E     +M ++ +   ++YG       GVLC
Sbjct: 790 SEAEE-----NMFNW-VAAAIAYG------PGVLC 812

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  220 bits (560), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 231/759 (30%), Positives = 357/759 (47%), Gaps = 90/759 (11%)

Query: 288 LSNLEELDMTN-NAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLY 346
           LSNLE L + N N   +L      +C   L+++ L    +      + S G   +LK+L 
Sbjct: 107 LSNLESLVLKNANLSGSLTSAAKSQCGVTLDSIDLAENTISGPISDISSFGVCSNLKSLN 166

Query: 347 LLFTNFKGTIVNQELHNFT-NLEELLLVKSDLHVSQLLQSIAS--FTSLKYLSIRGCVLK 403
           L   NF      + L   T +L+ L L  +++    L   ++S  F  L++ SI+G  L 
Sbjct: 167 L-SKNFLDPPGKEMLKGATFSLQVLDLSYNNISGFNLFPWVSSMGFVELEFFSIKGNKLA 225

Query: 404 GALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSF 463
           G++        P+  +   +L  +DLS  N S  FP++  ++ +NL+ L L++N  +G  
Sbjct: 226 GSI--------PELDFK--NLSYLDLSANNFSTVFPSF--KDCSNLQHLDLSSNKFYGDI 273

Query: 464 RMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADM-KML 522
              + S  KL+ L+++ N F G +P      L  L    L  N F G  P+  AD+ K +
Sbjct: 274 GSSLSSCGKLSFLNLTNNQFVGLVPKLPSESLQYLY---LRGNDFQGVYPNQLADLCKTV 330

Query: 523 KSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHI-FSKKFNLTNLMRLQLDGNKF 581
             LD+SYN  +G +P+ +   C SLE++ +SNNN  G +       L+N+  + L  NKF
Sbjct: 331 VELDLSYNNFSGMVPESLG-ECSSLELVDISNNNFSGKLPVDTLLKLSNIKTMVLSFNKF 389

Query: 582 IGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGN--LSALEDIIMPNNNLEGPIPIEFCQ 639
           +G +P S S    L  L +S N+L+G IP  +    ++ L+ + + NN  +GPIP     
Sbjct: 390 VGGLPDSFSNLPKLETLDMSSNNLTGIIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSN 449

Query: 640 LDYLKILDLSNNTIFGTLPSCF-SPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYN 698
              L  LDLS N + G++PS   S + ++++ L  N++ G +   + Y   L  L L +N
Sbjct: 450 CSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFN 509

Query: 699 CLHGSIPT---------WID---------------RLPQLSYLLLANNYIEGEIPIQICQ 734
            L G IP          WI                RL  L+ L L NN I G IP ++  
Sbjct: 510 DLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGN 569

Query: 735 LKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSP- 793
            + +  +DL+ N L+G IPP L   + N     AVA ++        YV   +  +GS  
Sbjct: 570 CQSLIWLDLNTNFLNGSIPPPLFKQSGN----IAVALLT-----GKRYVY--IKNDGSKE 618

Query: 794 ------------IGEEETVQFTTK---NMSYYYQGRILM------SMSGIDLSCNKLTGE 832
                       I +E+  + +T+   N +  Y+G          SM  +DLS NKL G 
Sbjct: 619 CHGAGNLLEFGGIRQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGS 678

Query: 833 IPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLA 892
           IP ++G +  +  LNL HN+L+G IP     LK +  LDLSYN   G IP  L  L  L 
Sbjct: 679 IPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLG 738

Query: 893 VFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTATPEAYTENK 952
              ++NNNLSG IP+  A F TF +  +  N  LCG PL   C     + A     +  +
Sbjct: 739 EIDLSNNNLSGMIPES-APFDTFPDYRFANNS-LCGYPLPLPCSSGPKSDANQHQKSHRR 796

Query: 953 EGDSLIDMDSFLITFTVSYGIVIIGIIGVLCINPYWRRR 991
           +  SL    +  + F++     I G+I ++ I    RRR
Sbjct: 797 QA-SLAGSVAMGLLFSL---FCIFGLI-IVAIETKKRRR 830

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1

 Score =  218 bits (556), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 207/647 (31%), Positives = 286/647 (44%), Gaps = 101/647 (15%)

Query: 412 GTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFG------SFRM 465
           GT    + + H L  +DLS+  LSG  P         L  L L+ NS  G      +F  
Sbjct: 104 GTLASSVQNIHRLSRLDLSYNRLSGPLPPGFFSTLDQLMILNLSYNSFNGELPLEQAFGN 163

Query: 466 PIHSHQKLATLDVSTNFFRGHIPVEIGTYLSG---LMDLNLSRNAFNGSIPSSFA-DMKM 521
             +    + TLD+S+N   G I +    YL G   L+  N+S N+F G IPS        
Sbjct: 164 ESNRFFSIQTLDLSSNLLEGEI-LRSSVYLQGTINLISFNVSNNSFTGPIPSFMCRSSPQ 222

Query: 522 LKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKF 581
           L  LD SYN  +G I   +   C  L +L    NNL G I S+ +NL+ L +L L  N+ 
Sbjct: 223 LSKLDFSYNDFSGHISQELG-RCLRLTVLQAGFNNLSGVIPSEIYNLSELEQLFLPANQL 281

Query: 582 IGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPI------ 635
            G+I  ++++   L  L L  NHL G+IP  +GNLS+L  + +  NN+ G +P+      
Sbjct: 282 TGKIDNNITRLRKLTSLALYSNHLEGEIPMDIGNLSSLRSLQLHINNINGTVPLSLANCT 341

Query: 636 -------------------EFCQLDYLKILDLSNNTIFGTLP-SCFSPAYIEEIHLSKNK 675
                              EF QL  LK+LDL NN+  G LP   FS   +  I  + NK
Sbjct: 342 KLVKLNLRVNQLGGGLTELEFSQLQSLKVLDLGNNSFTGALPDKIFSCKSLTAIRFAGNK 401

Query: 676 IEGRLE--------------------------SIIHYSPYLMTLDLSYNCLHGSIPTWID 709
           + G +                           SI+     L TL L+ N    ++P+  D
Sbjct: 402 LTGEISPQVLELESLSFMGLSDNKLTNITGALSILQGCRKLSTLILAKNFYDETVPSKED 461

Query: 710 RL-----PQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEG 764
            L     P+L    +    + GEIP  +  L +V ++DLS N   G IP  L    L + 
Sbjct: 462 FLSPDGFPKLRIFGVGACRLRGEIPAWLINLNKVEVMDLSMNRFVGSIPGWL--GTLPDL 519

Query: 765 YHEAVAPISSSSDDASTYVLPS-----VAPNGSPIGE----EETVQFTTKNMSYYYQGRI 815
           ++  +      SD+  T  LP       A     I E    E  +     N++   Q   
Sbjct: 520 FYLDL------SDNLLTGELPKELFQLRALMSQKITENNYLELPIFLNPNNVTTNQQYNK 573

Query: 816 LMSMS-GIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSY 874
           L S    I +  N LTG IP ++G L  +  L L  NNL+G+IP   SNL  +E LDLS 
Sbjct: 574 LYSFPPTIYIRRNNLTGSIPVEVGQLKVLHILELLGNNLSGSIPDELSNLTNLERLDLSN 633

Query: 875 NLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKS 934
           N L G IP  L  LN L+ F VANN+L G IP    QF TF + ++EGNP LCG  L  S
Sbjct: 634 NNLSGSIPWSLTNLNFLSYFNVANNSLEGPIPSE-GQFDTFPKANFEGNPLLCGGVLLTS 692

Query: 935 CDDNGLTTATPEAYTENKEGDSLIDMDSFLITFTVSYGIVIIGIIGV 981
           C             T  KE D L    +FL+   + Y +  + I+ V
Sbjct: 693 CKP-----------TRAKENDEL--NRTFLMGIAIGYFLSFVSILVV 726

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  216 bits (549), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 201/639 (31%), Positives = 314/639 (49%), Gaps = 53/639 (8%)

Query: 304 LVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHN 363
           L +PK+    R L  L + G A + G+ + +S+G    LK L L      G I    L  
Sbjct: 95  LSLPKNLPAFRSLQKLTISG-ANLTGT-LPESLGDCLGLKVLDLSSNGLVGDIP-WSLSK 151

Query: 364 FTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHD 423
             NLE L+L  + L   ++   I+  + LK L +   +L G++        P  L     
Sbjct: 152 LRNLETLILNSNQL-TGKIPPDISKCSKLKSLILFDNLLTGSI--------PTELGKLSG 202

Query: 424 LKNVDLS-HLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNF 482
           L+ + +  +  +SG+ P+  + + +NL  L LA  S+ G+    +   +KL TL + T  
Sbjct: 203 LEVIRIGGNKEISGQIPSE-IGDCSNLTVLGLAETSVSGNLPSSLGKLKKLETLSIYTTM 261

Query: 483 FRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAI 542
             G IP ++G   S L+DL L  N+ +GSIP     +  L+ L +  N L G IP+ +  
Sbjct: 262 ISGEIPSDLGN-CSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIG- 319

Query: 543 GCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSD 602
            C +L+++ LS N L G I S    L+ L    +  NKF G IP ++S C  L  L L  
Sbjct: 320 NCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDK 379

Query: 603 NHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPS-CF 661
           N +SG IP  LG L+ L      +N LEG IP        L+ LDLS N++ GT+PS  F
Sbjct: 380 NQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLF 439

Query: 662 SPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLAN 721
               + ++ L  N + G +   I     L+ L L +N + G IP+ I  L ++++L  ++
Sbjct: 440 MLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSS 499

Query: 722 NYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSD---- 777
           N + G++P +I    E+++IDLS+N+L G +P                 P+SS S     
Sbjct: 500 NRLHGKVPDEIGSCSELQMIDLSNNSLEGSLP----------------NPVSSLSGLQVL 543

Query: 778 DASTYVLPSVAPNGSPIGEEETVQ--FTTKNMSYYYQGRILMSM---SGI---DLSCNKL 829
           D S        P  + +G   ++     +KN+   + G I  S+   SG+   DL  N+L
Sbjct: 544 DVSANQFSGKIP--ASLGRLVSLNKLILSKNL---FSGSIPTSLGMCSGLQLLDLGSNEL 598

Query: 830 TGEIPTQIGYLTRIR-ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVL 888
           +GEIP+++G +  +  ALNLS N LTG IP+  ++L ++  LDLS+N+L G + P L  +
Sbjct: 599 SGEIPSELGDIENLEIALNLSSNRLTGKIPSKIASLNKLSILDLSHNMLEGDLAP-LANI 657

Query: 889 NTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 927
             L    ++ N+ SG +PD    F        EGN  LC
Sbjct: 658 ENLVSLNISYNSFSGYLPDN-KLFRQLSPQDLEGNKKLC 695

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  215 bits (548), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 229/759 (30%), Positives = 357/759 (47%), Gaps = 90/759 (11%)

Query: 288 LSNLEELDMTN-NAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLY 346
           LSNLE L + N N   +L      +C   L+++ L    +      + S G   +LK+L 
Sbjct: 107 LSNLESLVLKNANLSGSLTSAAKSQCGVTLDSIDLAENTISGPISDISSFGVCSNLKSLN 166

Query: 347 LLFTNFKGTIVNQELHNFT-NLEELLLVKSDLHVSQLLQSIAS--FTSLKYLSIRGCVLK 403
           L   NF      + L   T +L+ L L  +++    L   ++S  F  L++ S++G  L 
Sbjct: 167 L-SKNFLDPPGKEMLKAATFSLQVLDLSYNNISGFNLFPWVSSMGFVELEFFSLKGNKLA 225

Query: 404 GALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSF 463
           G++        P+  +   +L  +DLS  N S  FP++  ++ +NL+ L L++N  +G  
Sbjct: 226 GSI--------PELDFK--NLSYLDLSANNFSTVFPSF--KDCSNLQHLDLSSNKFYGDI 273

Query: 464 RMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADM-KML 522
              + S  KL+ L+++ N F G +P         L  L L  N F G  P+  AD+ K +
Sbjct: 274 GSSLSSCGKLSFLNLTNNQFVGLVPKLPS---ESLQYLYLRGNDFQGVYPNQLADLCKTV 330

Query: 523 KSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFN-LTNLMRLQLDGNKF 581
             LD+SYN  +G +P+ +   C SLE++ +S NN  G +     + L+N+  + L  NKF
Sbjct: 331 VELDLSYNNFSGMVPESLG-ECSSLELVDISYNNFSGKLPVDTLSKLSNIKTMVLSFNKF 389

Query: 582 IGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGN--LSALEDIIMPNNNLEGPIPIEFCQ 639
           +G +P S S    L  L +S N+L+G IP  +    ++ L+ + + NN  +GPIP     
Sbjct: 390 VGGLPDSFSNLLKLETLDMSSNNLTGVIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSN 449

Query: 640 LDYLKILDLSNNTIFGTLPSCF-SPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYN 698
              L  LDLS N + G++PS   S + ++++ L  N++ G +   + Y   L  L L +N
Sbjct: 450 CSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFN 509

Query: 699 CLHGSIPT---------WID---------------RLPQLSYLLLANNYIEGEIPIQICQ 734
            L G IP          WI                RL  L+ L L NN I G IP ++  
Sbjct: 510 DLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGN 569

Query: 735 LKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSP- 793
            + +  +DL+ N L+G IPP L   + N     AVA ++        YV   +  +GS  
Sbjct: 570 CQSLIWLDLNTNFLNGSIPPPLFKQSGN----IAVALLT-----GKRYVY--IKNDGSKE 618

Query: 794 ------------IGEEETVQFTTK---NMSYYYQGRILM------SMSGIDLSCNKLTGE 832
                       I +E+  + +T+   N +  Y+G          SM  +DLS NKL G 
Sbjct: 619 CHGAGNLLEFGGIRQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGS 678

Query: 833 IPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLA 892
           IP ++G +  +  LNL HN+L+G IP     LK +  LDLSYN   G IP  L  L  L 
Sbjct: 679 IPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLG 738

Query: 893 VFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTATPEAYTENK 952
              ++NNNLSG IP+  A F TF +  +  N  LCG PL   C     + A     +  +
Sbjct: 739 EIDLSNNNLSGMIPES-APFDTFPDYRFANNS-LCGYPLPIPCSSGPKSDANQHQKSHRR 796

Query: 953 EGDSLIDMDSFLITFTVSYGIVIIGIIGVLCINPYWRRR 991
           +  SL    +  + F++     I G+I ++ I    RRR
Sbjct: 797 QA-SLAGSVAMGLLFSL---FCIFGLI-IVAIETKKRRR 830

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1021
255581263	912	serine-threonine protein kinase, plant-t	0.870	0.974	0.443	0.0
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.928	0.647	0.435	0.0
359482757	1027	PREDICTED: LRR receptor-like serine/thre	0.947	0.941	0.396	1e-178
359482745	1026	PREDICTED: leucine-rich repeat receptor	0.952	0.948	0.395	1e-177
359482735	1097	PREDICTED: receptor-like protein 12-like	0.960	0.894	0.377	1e-175
359483099	1231	PREDICTED: probable LRR receptor-like se	0.938	0.778	0.393	1e-174
224073436	1014	predicted protein [Populus trichocarpa]	0.929	0.935	0.386	1e-170
359482749	1067	PREDICTED: leucine-rich repeat receptor	0.958	0.917	0.388	1e-170
224142481	781	predicted protein [Populus trichocarpa]	0.751	0.982	0.438	1e-164
224123984	1016	predicted protein [Populus trichocarpa]	0.937	0.941	0.388	1e-163

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/1017 (44%), Positives = 600/1017 (58%), Gaps = 128/1017 (12%)

Query: 5    KRVWVSELIFILLVVKGWWIEGCLEQERSALLQLKHFFNDDQRLQNWVDAADDENYSDCC 64
            K VW+  L   L++ +    +GCL++ER+ALLQLK FF+    LQ W+ A D+    DCC
Sbjct: 4    KWVWMGVL---LVLSETCCCKGCLDKERAALLQLKPFFDSTLALQKWLGAEDNL---DCC 57

Query: 65   QWERVECNKTTGRVIKLDLGDIKNRKNRKSERHLNASLFTPFQQLESLDLSWNNIAGCVE 124
            QWERVEC+  TGRV +LDL   +  ++ ++  +LNASLF PF++L+SL L  N+I  CVE
Sbjct: 58   QWERVECSSITGRVTRLDLDTTRAYQSSRN-WYLNASLFLPFEELKSLSLKGNSIVDCVE 116

Query: 125  NEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLS 184
            NEG ERLS                         LSSL +L L+ N  N    +  L   S
Sbjct: 117  NEGFERLST-----------------------RLSSLEVLDLSYNSFN-ESILSSLSEFS 152

Query: 185  NLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLA 244
            +L+ L++ +N  +   VP   + L    NL+ L LD     +S   ++G ++SL++LSL+
Sbjct: 153  SLKSLNLGFNPFE---VPIQAQDLPNFENLEELYLDKIELENSFLQTVGVMTSLKVLSLS 209

Query: 245  DNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNL 304
                 G++             P+                GL  L +L  LD+++N  +  
Sbjct: 210  GCGLTGAL-------------PNV--------------QGLCELIHLRVLDVSSNEFHG- 241

Query: 305  VVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNF 364
            ++P    CL  L                        SL+ L L    F G I N  L   
Sbjct: 242  ILP---WCLSNLT-----------------------SLQLLDLSSNQFVGDISNSPLKIL 275

Query: 365  TNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRG----CVLKGALHGQDG--------- 411
             +L +L +  +   V   L    + ++LK+  IRG      L+  LH             
Sbjct: 276  KSLVDLDVSNNHFQVPFSLGPFFNHSNLKH--IRGQNNAIYLEAELHSAPRFQLISIIFS 333

Query: 412  -----GTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMP 466
                 GTFP FLYHQ++L+ VDLSHL+L G+FPNWL+ NNT L+ L L NNSL G  ++P
Sbjct: 334  GYGICGTFPNFLYHQNNLQFVDLSHLSLKGEFPNWLLTNNTRLEILDLVNNSLSGHLQLP 393

Query: 467  IHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLD 526
            +H H  L  LD+S N    HIP+EIGT+L  L  LN+S N F+GSIPSSF +M  L+ LD
Sbjct: 394  LHPHVNLLALDISNNHVHDHIPLEIGTFLPKLELLNMSSNGFDGSIPSSFGNMNSLRILD 453

Query: 527  ISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIP 586
            +S NQL+G IP+ +A GCFSL  L LSNN+LQG +FSK+FNLTNL  L+LD N F G IP
Sbjct: 454  LSNNQLSGSIPEHLATGCFSLNTLILSNNSLQGQMFSKQFNLTNLWWLELDKNHFSGRIP 513

Query: 587  KSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKIL 646
            KSLSK   L  + LSDNHLSG IP W+GNLS L+++I+ NN L+GPIP+EFCQL YL++L
Sbjct: 514  KSLSKSA-LSIMDLSDNHLSGMIPGWIGNLSYLQNLILSNNRLKGPIPVEFCQLHYLEVL 572

Query: 647  DLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPT 706
            DL+NN++ G LPSC SP+ I  +HLS+N IEG   +    S +L+TLDLS N + G IPT
Sbjct: 573  DLANNSVSGILPSCLSPSSIIHVHLSQNMIEGPWTNAFSGSHFLVTLDLSSNRITGRIPT 632

Query: 707  WIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYH 766
             I  +  L  L L +N  +GEIP QIC L ++ LI L+ NNLSG IP CL    L++   
Sbjct: 633  LIGGINALRILNLKSNRFDGEIPAQICGLYQLSLIVLADNNLSGSIPSCL---QLDQS-- 687

Query: 767  EAVAP-ISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLS 825
            +++AP +    +  + Y LP V P          + FTTK  SY YQG+IL  +SGID S
Sbjct: 688  DSLAPDVPPVPNPLNPYYLP-VRP----------MYFTTKRRSYSYQGKILSYISGIDFS 736

Query: 826  CNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQL 885
            CNKLTGEIP ++G  + I +LNLS+N  TG IP+TFSNLKQIESLDLSYN L G IP QL
Sbjct: 737  CNKLTGEIPPEMGNHSAIYSLNLSYNRFTGPIPSTFSNLKQIESLDLSYNNLNGDIPSQL 796

Query: 886  IVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTATP 945
            + L  L+ F VA+NNL GK P R  QF+TFE  SYEGNP LCGLPL KSC +   ++A P
Sbjct: 797  LELKFLSYFSVAHNNLFGKTPKRTGQFATFEVSSYEGNPNLCGLPLPKSCTEREASSA-P 855

Query: 946  EAYTENKEGDSLIDMDSFLITFTVSYGIVIIGIIGVLCINPYWRRRWFYLVEVCMTS 1002
             A   ++E +  +DM++F  +F VSY  VIIG+  VL INP WRR WF  V++C++S
Sbjct: 856  RASAMDEESN-FLDMNTFYGSFIVSYTFVIIGMFLVLYINPQWRRAWFDFVDICISS 911

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1019 (43%), Positives = 596/1019 (58%), Gaps = 71/1019 (6%)

Query: 28   LEQERSALLQLKHFF--NDDQRLQNWVDAADDENYSDCCQWERVECNKTTGRVIKLDLGD 85
            L +ER ALL+LK  F   D   L +W D       SDCC WERVEC+ TTGRV+KL L +
Sbjct: 469  LYEERIALLELKAAFCSPDCSSLPSWEDEE-----SDCCGWERVECSNTTGRVLKLFLNN 523

Query: 86   IKNRKNRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSN 145
               R++ + + +LNASLF PF +L+ L+LS N +    +++G ER  +LNNL+ L L +N
Sbjct: 524  --TRESSQEDLYLNASLFIPFVELKILNLSTNMLVTLGDDDGSERPFKLNNLELLDLSNN 581

Query: 146  YFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGL 205
              + SI +SL  LSSL+ LSL  N L GSI  + L +L NLEELD+S N +++ +   GL
Sbjct: 582  TLDISILASLTELSSLKSLSLGTNILEGSI--QELAALHNLEELDLSKNDLESFITTTGL 639

Query: 206  ERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIK---------- 255
            +   +L  L+ L L+ N FN S   SLG LS L+ L L  N+  GS+ ++          
Sbjct: 640  K---SLRKLRVLHLETNDFNISTLKSLGRLSLLKELYLGGNKLEGSVTLRELNNLRNLEV 696

Query: 256  -----GKQASSILR-VPSFVDLVSLSSWSVGIN------TGLDSLSNLEELDMTNNAINN 303
                    +SSIL+ V     L +LS  S GIN       GL  L NL+ELD+++N    
Sbjct: 697  LDLSSTNISSSILQIVEVMTSLKALSLRSNGINGSQTALQGLCKLKNLQELDLSDNGFEG 756

Query: 304  LVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQS--IGSLPSLKTLYLLFTNFKGTIVNQEL 361
             V P    CL  L +L    ++    S  L S     L  L+ L L    F+        
Sbjct: 757  SVSP----CLGNLTSLRALDLSKNRFSGNLDSSLFAGLMKLEFLSLSHNVFQTFPPISSF 812

Query: 362  HNFTNLEELLLVKSD---LHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFL 418
               + LE L L+  +   L  S+    + SF  LK   +  C+LK        G+ P FL
Sbjct: 813  AKHSKLEVLDLICGNNTLLLESEDQTWVPSF-QLKVFRLSSCILKT-------GSIPSFL 864

Query: 419  YHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDV 478
            ++QHDL+ VDLS+ +L   FP WL++NNT L+ L L NNSL G F +P   +   + +D+
Sbjct: 865  HYQHDLRVVDLSNSSLEEDFPTWLMKNNTRLEELNLKNNSLTGYFHLPYRPNIFTSAIDI 924

Query: 479  STNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPD 538
            S N  +G +P  I   L  LM LN+SRN+F GSIPS F  M+ L  LD+S N  TG IP+
Sbjct: 925  SNNLLQGQMPSNISVSLPNLMFLNVSRNSFEGSIPS-FGGMRKLLFLDLSNNLFTGGIPE 983

Query: 539  RMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGL 598
             +A+GC SLE L LS N+L G +F +  NL +L  L+LD N F G+IP  LS    L  L
Sbjct: 984  DLAMGCPSLEYLILSKNDLHGQMFPRVSNLPSLRHLELDDNHFSGKIP-DLSNSSGLERL 1042

Query: 599  YLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLP 658
            Y+S N +SGK+P W+GN+S L  ++MPNN+LEGPIP+EFC LD L++LDLSNN + G+LP
Sbjct: 1043 YVSHNSISGKLPGWIGNMSNLAALVMPNNSLEGPIPVEFCSLDALELLDLSNNNLSGSLP 1102

Query: 659  SCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLL 718
            SCFSP+ +  +HL +N + G L      S  L TLD+  N L G IP WI     LS LL
Sbjct: 1103 SCFSPSLLIHVHLQENHLTGPLTKAFTRSMDLATLDIRNNNLSGGIPDWISMFSGLSILL 1162

Query: 719  LANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISS--SS 776
            L  N+ +G+IP Q+CQL ++ ++DLS+N+LSGHIP CL       G+      I S   S
Sbjct: 1163 LKGNHFQGKIPYQLCQLSKITILDLSYNSLSGHIPSCLNKIQFRTGFRSGKFSIISYFPS 1222

Query: 777  DDASTYV-------LPSVAPNGSPIGEEETV-QFTTKNMSYYYQGRILMSMSGIDLSCNK 828
               S+Y+       L  V  N  PI  ++ + +FTTKN + +Y+G  L SM+GIDLS NK
Sbjct: 1223 PGFSSYLYHSQHIELSQVNVNSYPIAYDKAMAEFTTKNRTDFYKGNFLYSMTGIDLSSNK 1282

Query: 829  LTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVL 888
            LTG IP +IG L+++ ALNLSHN LTG IP  FS LK IESLDLSYN L G IP +L  L
Sbjct: 1283 LTGAIPPEIGNLSQVHALNLSHNILTGPIPAAFSGLKSIESLDLSYNNLTGTIPGELTEL 1342

Query: 889  NTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTATPEAY 948
              LAVF VA NNLSGKIP+  AQF TF E+SY GNP+LCG  L K+C      +   E  
Sbjct: 1343 TNLAVFSVAYNNLSGKIPEMTAQFGTFLENSYVGNPYLCGSLLRKNC------SRAEEEA 1396

Query: 949  TENKEGDSLIDMDSFLITFTVSYGIVIIGIIGVLCINPYWRRRWFYLVEVCMTSCYYFV 1007
               +    L D D F ++F  SY +V++G+  VL IN  WR++WF++++V +T C  FV
Sbjct: 1397 EIEEGEKGLTDRDIFYVSFGASYVVVLLGVAAVLYINGGWRKKWFHVIDVLITCCCNFV 1455

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482757|ref|XP_002268914.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  632 bits (1629), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 412/1039 (39%), Positives = 579/1039 (55%), Gaps = 72/1039 (6%)

Query: 13   IFILLVVKGWWIEGCLEQERSALLQLKHFF--NDDQR---LQNWVDAADDENYSDCCQWE 67
            +FILL+V+    +GC+E+E+  LL+ K F   ND+     L +W+D     N S+CC WE
Sbjct: 12   VFILLLVQICGCKGCIEEEKMGLLEFKAFLKVNDEHTDFLLPSWID----NNTSECCNWE 67

Query: 68   RVECNKTTGRVIKLDLGDIKNRKNRKSERH----------LNASLFTPFQQLESLDLSWN 117
            RV CN TTGRV KL L DI+ ++N                LN S+F  F++L  L+LS N
Sbjct: 68   RVICNPTTGRVKKLSLNDIRQQQNWLEVSWYGYENVKFWLLNVSIFLHFEELHHLNLSGN 127

Query: 118  NIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDI 177
            +  G +ENEG + LS L  L+ L +  N F+ S   SL  ++SL+ L++    L GS  I
Sbjct: 128  SFDGFIENEGFKGLSSLKKLEILDISGNEFDKSALKSLSAITSLKTLAICSMGLAGSFPI 187

Query: 178  KGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSS 237
            + L SL NLE LD+SYN +++  + QG + LS L  L+ L L  N FN +I   L GL+S
Sbjct: 188  RELASLRNLEVLDLSYNDLESFQLVQGFKSLSKLKKLEILNLGDNQFNKTIIKQLSGLTS 247

Query: 238  LRILSLADNRFNG---SIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEEL 294
            L+ L +  N   G   S D      S +  + SFV              G   L+ L+EL
Sbjct: 248  LKTLVVRYNYIEGLFPSQDSMAPYQSKLHVLFSFV--------------GFCQLNKLQEL 293

Query: 295  DMTNNAINNLVVPKDYRCLRKLNTLYLGGIA--MIDGSKVLQSIGSLPSLKTLYLLFTNF 352
            D++ N    ++ P    CL    +L L  I+  +  G+     + +L SL+ + L +  F
Sbjct: 294  DLSYNLFQGILPP----CLNNFTSLRLLDISANLFSGNLSSPLLPNLTSLEYIDLSYNQF 349

Query: 353  KGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFT-------------SLKYLSIRG 399
            +G+       N + L+ ++L + +    ++ +    F               LK LS+  
Sbjct: 350  EGSFSFSSFANHSKLQVVILGRDNNIFEEVGRDNNKFEVETEYPVGWVPLFQLKVLSLSS 409

Query: 400  CVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSL 459
            C L G L        P FL +Q  L  VDLSH NL+G FPNWL+ NNT L+ L+L NNSL
Sbjct: 410  CKLTGDL--------PGFLQYQFRLVGVDLSHNNLTGSFPNWLLANNTRLEFLVLRNNSL 461

Query: 460  FGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADM 519
             G   +P+  + ++ +LD+S N   G +   +   +  +M LNLS N F G +PSS A++
Sbjct: 462  MGQL-LPLGPNTRINSLDISHNQLDGQLQENVAHMIPNIMSLNLSNNGFEGILPSSIAEL 520

Query: 520  KMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGN 579
            + L  LD+  N  + E+P ++ +    LEIL LSNN   G IFS+ FNLT L  L L  N
Sbjct: 521  RALSMLDLFTNNFSREVPKQL-LAAKDLEILKLSNNKFHGEIFSRDFNLTWLKHLYLGNN 579

Query: 580  KFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQ 639
            +F G +   + +  LL  L +S+N++SG+IP W+GN++ L  ++M NNN +G +P E  Q
Sbjct: 580  QFTGTLSNVICRSSLLRVLDVSNNYMSGEIPSWIGNMTGLGTLVMGNNNFKGKLPPEISQ 639

Query: 640  LDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNC 699
            L  +  LD+S N + G+LPS  S  Y+E +HL  N   G +      S  L+TLD+  N 
Sbjct: 640  LSGMMFLDISQNALSGSLPSLKSMEYLEHLHLQGNMFTGLIPRDFLNSSNLLTLDIRENR 699

Query: 700  LHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNT 759
            L GSIP  I  L +L  LLL  N + G IP  +C L E+ L+DLS+N+ SG IP    + 
Sbjct: 700  LFGSIPDSISALLRLRILLLGGNLLSGFIPNHLCHLTEISLMDLSNNSFSGPIPKFFGHI 759

Query: 760  ALNEGYHE----AVAPISSSSDDASTYVLPSVAPNGSPI---GEEETVQFTTKNMSYYYQ 812
               E   E         S    ++  Y    V   GSPI    E++ V F TKN    Y+
Sbjct: 760  RFGEMKKEDNVFGQFIESEYGWNSLAYAGYLVKDLGSPILVYNEKDEVDFVTKNRRDSYK 819

Query: 813  GRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDL 872
            G IL  MSG+DLSCN LTGEIP ++G L+ IRALNLSHN L G+IP +FSNL QIESLDL
Sbjct: 820  GGILEFMSGLDLSCNNLTGEIPHELGMLSWIRALNLSHNQLNGSIPKSFSNLSQIESLDL 879

Query: 873  SYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLS 932
            SYN L G+IP +L+ LN L VF VA NN+SG++PD  AQF+TF+E +YEGNPFLCG  L 
Sbjct: 880  SYNKLGGEIPLELVELNFLEVFSVAYNNISGRVPDTKAQFATFDESNYEGNPFLCGELLK 939

Query: 933  KSCDDNGLTTATPEAYTENKEGDSLIDMDSFLITFTVSYGIVIIGIIGVLCINPYWRRRW 992
            + C+ +  +   P    E++     I+   F  +FT SY I+++G   +L INPYWR RW
Sbjct: 940  RKCNTSIESPCAPSQSFESEAKWYDINHVVFFASFTTSYIIILLGFATILYINPYWRHRW 999

Query: 993  FYLVEVCMTSCYYFVADNL 1011
            F  +E C+ SCYYFV+D+L
Sbjct: 1000 FNFIEECIYSCYYFVSDSL 1018

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482745|ref|XP_003632825.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  629 bits (1621), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 408/1032 (39%), Positives = 590/1032 (57%), Gaps = 59/1032 (5%)

Query: 13   IFILLVVKGWWIEGCLEQERSALLQLKHFF-----NDDQRLQNWVDAADDENYSDCCQWE 67
            +FILL+V+    +GC+++E+  LL+ K F      + D  L +W+D     N S+CC WE
Sbjct: 12   VFILLLVQICGCKGCIKEEKMGLLEFKAFLKLNNEHADFLLPSWID----NNTSECCNWE 67

Query: 68   RVECNKTTGRVIKLDLGDIKNRKNRKSERH----------LNASLFTPFQQLESLDLSWN 117
            RV CN TTGRV KL L DI  ++N   +            LN SLF PF++L  L+LS N
Sbjct: 68   RVICNPTTGRVKKLFLNDITRQQNFLEDDWYHYENVKFWLLNVSLFLPFEELHHLNLSAN 127

Query: 118  NIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDI 177
            +  G +ENEG + LS L  L+ L +  N F+ S   SLG ++SL+ L++    LNGS  I
Sbjct: 128  SFDGFIENEGFKGLSSLKKLEILDISGNEFDKSALKSLGTITSLKTLAICSMGLNGSFSI 187

Query: 178  KGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSS 237
            + L SL NLE LD+SYN +++    Q L+  ++LSNL+ L L YN F+ SI SS+  +SS
Sbjct: 188  RELASLRNLEVLDLSYNDLESF---QLLQDFASLSNLELLDLSYNLFSGSIPSSIRLMSS 244

Query: 238  ---LRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEEL 294
               L +L L+ N F+G +    +  SS+  +    + ++ S      N G   L+ L+EL
Sbjct: 245  INNLEVLDLSGNSFSGIVPSSIRLLSSLKSLSLAGNHLNGSL----ANQGFCQLNKLQEL 300

Query: 295  DMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQS--IGSLPSLKTLYLLFTNF 352
            D++ N    ++ P    CL  L +L L  +++   S  L S  + +L SL+ + L +  F
Sbjct: 301  DLSYNLFQGILPP----CLNNLTSLRLLDLSVNLFSGNLSSPLLPNLTSLEYIDLSYNQF 356

Query: 353  KGTIVNQELHNFTNLEELLLV----KSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHG 408
            +G+       N + L+ + L     K ++     +  +  F  LK LS+  C L G L  
Sbjct: 357  EGSFSFSSFANHSKLQMVKLGMNNNKFEVETEYPIGWVPLF-QLKALSLDSCKLTGDL-- 413

Query: 409  QDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIH 468
                  P FL +Q  L  VDLSH NL+G FPNWL+ENNT LK+L+L NNSL G   +P+ 
Sbjct: 414  ------PSFLQYQFRLVGVDLSHNNLTGSFPNWLLENNTRLKSLVLRNNSLMGQL-LPLE 466

Query: 469  SHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDIS 528
             + ++ +LD+S N   G +   +   +  +  LNLS N F G +PSS  +++ L  LD+S
Sbjct: 467  RNTRIHSLDISHNQLDGQLQENVAHMIPNMKYLNLSDNGFEGILPSSIVELRALWYLDLS 526

Query: 529  YNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKS 588
             N  +GE+P ++ +    L +L LSNN   G IFS+ FNL  L  L L  N+  G +   
Sbjct: 527  TNNFSGEVPKQL-LAAKDLGVLKLSNNKFHGEIFSRDFNLIRLEVLYLGNNQLTGTLSNV 585

Query: 589  LSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDL 648
            +SK   LG L +S+N++SG+IP  +GN++ L  +++ NN+ +G +P E  QL  L+ LD+
Sbjct: 586  ISKSSWLGVLDVSNNYMSGEIPSQIGNMTYLTTLVLGNNSFKGKLPPEISQLWGLEFLDV 645

Query: 649  SNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWI 708
            S N + G+LP   +   ++ +HL  N   G +      S +L+TLD+  N L GSIP  I
Sbjct: 646  SQNALSGSLPCLKTMESLKHLHLQGNMFTGLIPRDFLNSSHLLTLDMRDNRLFGSIPNSI 705

Query: 709  DRL-PQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHE 767
              L  QL   LL  N + G IP  +C L E+ L+DLS+N+ SG IP C  +    E   E
Sbjct: 706  SALLKQLRIFLLGGNLLSGFIPNHLCHLTEISLMDLSNNSFSGPIPKCFGHIRFGEMKKE 765

Query: 768  -----AVAPISSSSDDA---STYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSM 819
                     I    D     + Y++       S    ++ V+F TKN   +Y+G IL  M
Sbjct: 766  DNVFGQFIEIRYGMDSHLVYAGYLVKYWEDLSSVYKGKDEVEFVTKNRRDFYRGGILEFM 825

Query: 820  SGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLG 879
            SG+DLSCN LTGEIP ++G L+ IRALNLSHN L G+IP +FS+L QIESLDLSYN L G
Sbjct: 826  SGLDLSCNNLTGEIPHELGMLSWIRALNLSHNQLNGSIPKSFSDLSQIESLDLSYNKLGG 885

Query: 880  KIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNG 939
            +IP +L+ LN LAVF VA NN+SG++P+  AQF+TF+E SYEGNPFLCG  L + C+ + 
Sbjct: 886  EIPLELVELNFLAVFSVAYNNISGRVPNAKAQFATFDESSYEGNPFLCGELLKRKCNTSI 945

Query: 940  LTTATPEAYTENKEGDSLIDMDSFLITFTVSYGIVIIGIIGVLCINPYWRRRWFYLVEVC 999
             +   P    E++     I+   F  +FT SY ++++G + +L INPYWR RWF  +E C
Sbjct: 946  ESPCAPSQSFESETKWYDINHVVFFASFTTSYIMILLGFVTILYINPYWRHRWFNFIEEC 1005

Query: 1000 MTSCYYFVADNL 1011
            + SCYYFV D+L
Sbjct: 1006 VYSCYYFVFDSL 1017

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482735|ref|XP_003632821.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  622 bits (1604), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 413/1095 (37%), Positives = 595/1095 (54%), Gaps = 114/1095 (10%)

Query: 13   IFILLVVKGWWIEGCLEQERSALLQLKHFFN-DDQRLQNWVDAADDENYSDCCQWERVEC 71
            +FILL+V+    +GC+E+E+  LL+ K F   +D+     + +  D N S+CC WERV C
Sbjct: 12   VFILLLVQICECKGCIEEEKMGLLEFKAFLKLNDEHADFLLPSWLDNNTSECCNWERVIC 71

Query: 72   NKTTGRVIKLDLGDIKNRKNRKSERH----------LNASLFTPFQQLESLDLSWNNIAG 121
            N TTG+V KL L DI+ ++N   +            LN SLF PF++L  L+LS N+  G
Sbjct: 72   NPTTGQVKKLFLNDIRQQQNFLEDNWYYYENAKFWLLNVSLFLPFEELHHLNLSANSFDG 131

Query: 122  CVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLD 181
             +ENEG + LS+L  L+ L L  N+FN +I   L GL+SL+ L +++N + G    +G  
Sbjct: 132  FIENEGFKSLSKLKKLEILNLGYNWFNKTIIKQLSGLTSLKTLVVSNNYIEGLFPSQGFC 191

Query: 182  SLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSS-LGGLSSLRI 240
             L+ L+ELD+SYN    ++ P     L+ L++L+ L L  N F+ ++ S  L  L+S   
Sbjct: 192  QLNKLQELDLSYNLFQGILPPC----LNNLTSLRLLDLSSNLFSGNLSSPLLPNLASQEY 247

Query: 241  LSLADNRFNGSIDIKGKQASSILR---------------------VPSF----------- 268
            + L+ N+F GS         S L+                     VP F           
Sbjct: 248  IDLSYNQFEGSFSFSSFANHSNLQVVKLGRNNNKFEVETEYPVGWVPLFQLEALMLSNLV 307

Query: 269  -VDLV------SLSSWSVGINTGLD-----------------------SLSNLEELDMTN 298
             VDL         ++W +  NT L+                        L+ L+ELD++ 
Sbjct: 308  VVDLSHNNLTRRFANWLLENNTRLEFLALMNNSLMGQLLPLRPNTRFCQLNKLQELDLSY 367

Query: 299  NAINNLVVPKDYRCLRKLNTLYLGGIA--MIDGSKVLQSIGSLPSLKTLYLLFTNFKGTI 356
            N    ++ P    CL    +L L  I+  +  G+     + +L SL+ + L +  F+G+ 
Sbjct: 368  NLFQGILPP----CLNNFTSLRLLDISANLFSGNLSSPLLPNLTSLEYIDLSYNQFEGSF 423

Query: 357  VNQELHNFTNLEELLLVKSDLHVSQLLQSIASFT-------------SLKYLSIRGCVLK 403
                  N + L+ ++L + ++   +  +    F               LK LS+  C L 
Sbjct: 424  SFSSFANHSKLQVVILGRDNIKFKEFGRDNKKFEVETEYPVGWVPLFQLKVLSLSSCKLT 483

Query: 404  GALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSF 463
            G L        P FL +Q  L  VDLSH NL+G FPNWL+ENNT L+ LLL NNSL G  
Sbjct: 484  GDL--------PGFLQYQFRLVGVDLSHNNLTGSFPNWLLENNTRLEILLLRNNSLMGQL 535

Query: 464  RMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLK 523
             +P+  + ++ +LD+S N   G +   +   +  +  LNLS N F G IPSS A+++ L+
Sbjct: 536  -LPLGPNTRINSLDISHNQLDGQLQENVAHMIPNITSLNLSNNGFEGIIPSSIAELRALQ 594

Query: 524  SLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIG 583
             LD+S N  +GE+P ++ +    LEIL LSNN   G IFS+ FNLT L+ L L  N+F G
Sbjct: 595  ILDLSTNNFSGEVPKQL-LAAKDLEILKLSNNKFHGEIFSRDFNLTGLLCLYLGNNQFTG 653

Query: 584  EIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYL 643
             +   +S+   L  L +S+N++SG+IP W+GN++ L  ++M NNN +G +P E  QL  +
Sbjct: 654  TLSNVISRISWLWVLDVSNNYMSGEIPSWIGNMTLLRTLVMGNNNFKGKLPPEISQLQRM 713

Query: 644  KILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGS 703
            + LD+S N + G+LPS  S  Y+E +HL  N   G +      S  L+TLD+  N L GS
Sbjct: 714  EFLDVSQNALSGSLPSLKSMEYLEHLHLQGNMFTGLIPRDFLNSSNLLTLDIRENRLFGS 773

Query: 704  IPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNE 763
            IP  I  L +L  LLL  N + G IP  +C L E+ L+DLS+N+ SG IP C  +    E
Sbjct: 774  IPNSISALLKLRILLLRGNLLSGFIPNHLCHLTEISLMDLSNNSFSGPIPRCFGHIRFGE 833

Query: 764  G------YHEAVAPISSSSDDASTYVLPSVAPNGSPI-GEEETVQFTTKNMSYYYQGRIL 816
                   + + +     +SD      L       SP   E++ V+F TKN   +Y+G IL
Sbjct: 834  TKKEDNVFGQFMYWYELNSDLVYAGYLVKHWEFLSPTYNEKDEVEFVTKNRHDFYRGGIL 893

Query: 817  MSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL 876
              MSG+DLSCN LTGEIP ++G L+ IRALNLSHN L G+IP +FSNL QIESLDLSYN 
Sbjct: 894  EFMSGLDLSCNNLTGEIPHELGMLSWIRALNLSHNQLNGSIPKSFSNLSQIESLDLSYNK 953

Query: 877  LLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCD 936
            L G+IP +L+ LN L VF VA NN SG++PD  AQF TF+E SYEGNPFLCG  L + C+
Sbjct: 954  LGGEIPLELVELNFLEVFSVAYNNFSGRVPDTKAQFGTFDERSYEGNPFLCGELLKRKCN 1013

Query: 937  DNGLTTATPEAYTENKEGDSLIDMDSFLITFTVSYGIVIIGIIGVLCINPYWRRRWFYLV 996
             +  +   P    E++     I+   F  +FT SY ++++G + +L INPYWR RWF  +
Sbjct: 1014 TSIESPCAPSQSFESEAKWYDINHVVFFASFTTSYIMILLGFVIILYINPYWRHRWFNFI 1073

Query: 997  EVCMTSCYYFVADNL 1011
            E C+ SCYYFV D+L
Sbjct: 1074 EECIYSCYYFVFDSL 1088

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483099|ref|XP_002262931.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  620 bits (1599), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 409/1039 (39%), Positives = 578/1039 (55%), Gaps = 81/1039 (7%)

Query: 13   IFILLVVKGWWIEGCLEQERSALLQLKHFF--ND---DQRLQNWVDAADDENYSDCCQWE 67
            +FILL+V+    +GC+E+E+  LL+ K F   ND   D  L +W+D     N SDCC WE
Sbjct: 12   VFILLLVQICGCKGCIEEEKMGLLEFKAFLKLNDGHADFLLPSWID----NNISDCCNWE 67

Query: 68   RVECNKTTGRVIKLDLGDIKNRKNRKSERH----------LNASLFTPFQQLESLDLSWN 117
            RV CN TTGRV KL L DI+ ++N                LN SLF PF++L  L+LS N
Sbjct: 68   RVICNPTTGRVKKLSLNDIRQQQNMLEVNWYYYENVKFWLLNVSLFLPFEELHHLNLSAN 127

Query: 118  NIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDI 177
            +  G +ENEG + LS L  L+ L +  N F+ S   SLG ++SL+ L++    L+GS  I
Sbjct: 128  SFDGFIENEGFKGLSSLKKLEILDISGNEFDKSALKSLGAITSLKTLAIRSMGLDGSFPI 187

Query: 178  KGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSS 237
            + L S  NLE LD+SYN +++  + QGL    +L  L+ L +  N F+ S+  SLG ++S
Sbjct: 188  QELASSRNLEVLDLSYNDLESFQLVQGL---LSLKKLEILAISGNEFDKSVIKSLGAITS 244

Query: 238  LRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGI---------------- 281
            L+ L L     NGS  I+   + S L +   +DL S +S+S GI                
Sbjct: 245  LKTLVLCRIGLNGSFPIQDFASLSNLEI---LDL-SYNSFS-GILPSSIRLMSSLKSLSL 299

Query: 282  ----------NTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIA--MIDG 329
                      N G   L+ L+ELD+ +N    ++ P    CL  L +L L  ++  +  G
Sbjct: 300  AGNQLNGSLPNQGFCQLNKLQELDLNSNFFQGILPP----CLNNLTSLRLLDLSHNLFSG 355

Query: 330  SKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLV----KSDLHVSQLLQS 385
            +     + SL SL+ + L +  F+G        N +NL+ ++      K ++     +  
Sbjct: 356  NVSSSLLPSLTSLEYIDLSYNLFEGPFSFNSFANHSNLQVVIHGSDNNKFEIETEYPVGW 415

Query: 386  IASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVEN 445
            +  F  LK L +    L G         FP FL +Q  L  VDLSH NL+G FPNWL+EN
Sbjct: 416  VPLF-QLKVLVLSNYKLIG--------DFPGFLRYQFRLTVVDLSHNNLTGSFPNWLLEN 466

Query: 446  NTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSR 505
            NT L+ L+L NNSL G   +P+  + ++ +LD+S N   G +   +   +  +  LNLS 
Sbjct: 467  NTRLEYLVLRNNSLMGQL-LPLRPNSRITSLDISDNRLVGELQQNVANMIPNIEHLNLSN 525

Query: 506  NAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKK 565
            N F G +PSS A+M  L SLD+S N  +GE+P ++ +    LE L LSNN   G IFS+ 
Sbjct: 526  NGFEGILPSSIAEMSSLWSLDLSANSFSGEVPKQLLVAK-DLEFLKLSNNKFHGEIFSRD 584

Query: 566  FNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMP 625
            FNLT+L  L LD N+F G +   +S+   L  L +S+N++SG+IP W+GN++ L  +++ 
Sbjct: 585  FNLTSLEFLHLDNNQFKGTLSNVISRSSWLRVLDVSNNNMSGEIPSWIGNMTDLTTLVLG 644

Query: 626  NNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIH 685
            NN+ +G +P E  QL  L+ LD+S NT+ G+LPS  S  Y++ +HL  N   G +     
Sbjct: 645  NNSFKGKLPPEISQLQRLEFLDVSQNTLSGSLPSLKSIEYLKHLHLQGNMFTGLIPRDFL 704

Query: 686  YSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSH 745
             S  L+TLD+  N L GSIP  I RL +L   LL  N + G IP Q+C L ++ L+DLS+
Sbjct: 705  NSSNLLTLDIRDNRLFGSIPNSISRLLELRIFLLRGNLLSGFIPNQLCHLTKISLMDLSN 764

Query: 746  NNLSGHIPPCLVNTALNE--GYHEAVAPISSSSDDASTYVLPSVA----PNGSPIGEEET 799
            NN SG IP C  +    +    H    P+ +     S Y    V        +   E + 
Sbjct: 765  NNFSGSIPKCFGHIQFGDFKTEHNVYKPMFNPYSFFSIYTGYLVKYLFFSTEAHRDEVDE 824

Query: 800  VQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPT 859
            V+F TKN S  Y G IL  MSG+DLSCN LTGEIP ++G L+ I ALNLSHN L G++P 
Sbjct: 825  VEFVTKNRSNSYGGGILDFMSGLDLSCNNLTGEIPRELGMLSSILALNLSHNQLKGSVPK 884

Query: 860  TFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDS 919
            +FS L QIESLDLSYN L G+IPP+ I LN L VF VA+NN+SG++PD   QF TF E S
Sbjct: 885  SFSKLSQIESLDLSYNKLSGEIPPEFIGLNFLEVFNVAHNNISGRVPDMKEQFGTFGESS 944

Query: 920  YEGNPFLCGLPLSKSCDDNGLTTATPEAYTENKEGDSL-IDMDSFLITFTVSYGIVIIGI 978
            YE NPFLCG  L + C+ +  +  +P   ++  E     ID   F  +F  SY ++++G 
Sbjct: 945  YEDNPFLCGPMLKRKCNTSIESPNSPSQPSQESEAKWYDIDHVVFFASFVASYIMILLGF 1004

Query: 979  IGVLCINPYWRRRWFYLVE 997
              +L INPYWR+RWF  +E
Sbjct: 1005 AAILYINPYWRQRWFNFIE 1023

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa]

 Score =  606 bits (1563), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 410/1060 (38%), Positives = 581/1060 (54%), Gaps = 111/1060 (10%)

Query: 12   LIFILLVVKGWW---IEGCLEQERSALLQLKHFFNDDQ-RLQNWVDAADDENYSDCCQWE 67
            L+ ILL + G W     GCLE+ER  LL+++   + D   L++WVD+      S+CC+W+
Sbjct: 6    LLAILLTLVGEWYGRCYGCLEEERIGLLEIQSLIDPDGFSLRHWVDS------SNCCEWD 59

Query: 68   RVECNKTTGRVIKLDLGDIKNRKNRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEG 127
             +EC+ TT RVI+L L   +++     +  LNASLF PF++L+SL+L +N + GC+ENEG
Sbjct: 60   GIECDNTTRRVIELSLSGARDQS--FGDWVLNASLFLPFKELQSLELRFNGLVGCLENEG 117

Query: 128  VERLSRLNNLKFLLLDSNYFNN--SIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSN 185
             E LS  +NL+ L L  N FNN  SI S + GLS+L+ L L+ N L GS           
Sbjct: 118  FEVLS--SNLRNLDLSDNRFNNDKSILSCMTGLSTLKSLDLSGNGLTGS----------- 164

Query: 186  LEELDMSYNAIDNLVVPQGLERLST-LSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLA 244
                              G E +S+ L  L  L L YN FN SI S L GLS L+ L+L+
Sbjct: 165  ------------------GFEIISSHLEKLDNLDLSYNIFNDSILSHLRGLSYLKSLNLS 206

Query: 245  DNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNL 304
             N   GS  + G   +S      ++D  SL    +     + +L +L+ L +    ++  
Sbjct: 207  GNMLLGSTTVNGTFFNSSTLEELYLDRTSLP---INFLQNIGALPDLKVLSVAECDLHGT 263

Query: 305  VVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNF 364
            +  + +  L+ L  L L G  +  G  +   +G+L SL+ L +    F G I +  L N 
Sbjct: 264  LPAQGWCELKNLRQLDLSGNNL--GGSLPDCLGNLSSLQLLDVSENQFTGNIASGPLTNL 321

Query: 365  TNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDG------------- 411
            T+LE L L  +   V   ++   + +SLK+ S     L       D              
Sbjct: 322  TSLEFLSLSNNLFEVPISMKPFMNHSSLKFFSSENNKLVTEPAAFDNLIPKFQLVFFRLS 381

Query: 412  -------GTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFR 464
                      P FLY+Q+D++ +DLSH N++  FP+WL++NNT L+ L L+NNS  G+ +
Sbjct: 382  KTTEALNVKIPDFLYYQYDIRVLDLSHNNITAMFPSWLLKNNTRLEQLYLSNNSFVGTLQ 441

Query: 465  MPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKS 524
            +  H +  +  LD+S N   G IP +I      +  L ++ N F G IPS   ++  LK 
Sbjct: 442  LQDHPYLNMTELDISNNNMNGQIPKDICLIFPNMWSLRMANNGFTGCIPSCLGNISSLKI 501

Query: 525  LDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGE 584
            LD+S NQL+    +++     ++  L LSNNNL G + +  FN + L  L L GN F G+
Sbjct: 502  LDLSNNQLSIVKLEQLT----TIWFLKLSNNNLGGQLPTSVFNSSTLEYLYLHGNNFWGQ 557

Query: 585  IPKSLSKCY-LLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYL 643
            I   L   + +   L LSDN  SG +PRWL N + L  I +  N  +GPI  +FC+L+ L
Sbjct: 558  ISDFLLYGWKMWSTLDLSDNQFSGMLPRWLVNSTGLIAIDLSKNYFKGPILRDFCKLNQL 617

Query: 644  KILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGS 703
            + LDLS N + G +PSCFSP  I  +HLS+N++ G L    + +  L+T+DL  N   GS
Sbjct: 618  EYLDLSENNLSGYIPSCFSPPQITHVHLSENRLSGPLTYGFYNNSSLVTMDLRDNNFTGS 677

Query: 704  IPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNE 763
             P WI  L  LS LLL  N+ +GE+P+Q+C L+++ ++D+S N LSG +P CL N    E
Sbjct: 678  FPNWIGNLSSLSVLLLRANHFDGELPVQLCLLEQLSILDVSQNQLSGPLPSCLGNLTFKE 737

Query: 764  GYHEAVAPIS----SSSDDASTYVLPSVAPNGSPIGE--------------EETVQFTTK 805
               + +A +     S S + + Y        G P+ E              EE ++FTTK
Sbjct: 738  SSQKTLADLGADVLSRSIEKAYY-----ETMGPPLVESMYNLRKGFLLNFTEEVIEFTTK 792

Query: 806  NMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLK 865
            NM Y Y+G+ L  MSGIDLS N   G IP + G L++I +LNLSHNNLTG+IP TFSNLK
Sbjct: 793  NMYYRYKGKTLSYMSGIDLSNNNFVGAIPPEFGDLSKILSLNLSHNNLTGSIPATFSNLK 852

Query: 866  QIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPF 925
            QIESLDLSYN L G IPPQL  + TL VF VA+NNLSG  P+R  QF TF+E  YEGNPF
Sbjct: 853  QIESLDLSYNNLNGVIPPQLTDITTLEVFSVAHNNLSGNTPERKYQFGTFDESCYEGNPF 912

Query: 926  LCGLPLSKSCDDNGLTT---------ATPEAYTENKEGDSLIDMDSFLITFTVSYGIVII 976
            LCG PL  +C +  + +         + P  Y E  + D  IDM+ F I F V Y +V++
Sbjct: 913  LCGPPLRNNCSEEAVPSQPVPSQPVPSQPVPYDEQGD-DGFIDMEFFYINFGVCYTVVVM 971

Query: 977  GIIGVLCINPYWRRRWFYLVEVCMTSCYYFVADNLIPRRF 1016
             I+ VL I+PYWRRRW Y +E C+ +CYYFV  +   R+F
Sbjct: 972  IIVVVLYIDPYWRRRWSYFIEDCIDTCYYFVVASF--RKF 1009

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482749|ref|XP_002262614.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 414/1067 (38%), Positives = 583/1067 (54%), Gaps = 88/1067 (8%)

Query: 13   IFILLVVKGWWIEGCLEQERSALLQLKHFF-----NDDQRLQNWVDAADDENYSDCCQWE 67
            +FILL+V+    +GC+E+E+  LL+ K F      + D  L +W+D     N S+CC WE
Sbjct: 12   VFILLLVQICGCKGCIEEEKMGLLEFKAFLKLNNEHADFLLPSWID----NNTSECCNWE 67

Query: 68   RVECNKTTGRVIKLDLGDIKNRKNRKSERH--------LNASLFTPFQQLESLDLSWNNI 119
            RV CN TTGRV KL   DI  +    +  +        LN SLF PF++L  L+LS N+ 
Sbjct: 68   RVICNPTTGRVKKLFFNDITRQHLEDNWYYYENVKFWLLNVSLFLPFEELHHLNLSANSF 127

Query: 120  AGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKG 179
             G +ENEG + LS+L  L+ L L  N FN +I   L GL+SL+ L ++ N + G    + 
Sbjct: 128  DGFIENEGFKSLSKLKKLEILNLRDNQFNKTIIKQLSGLTSLKTLVVSYNYIEGLFPSQD 187

Query: 180  LDSLSNLEELDMS-YNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSL 238
              SL+NLE LD+S + +++NL +   L   ++LSNLK L L YNSF+  + SS+  +SSL
Sbjct: 188  FASLNNLEILDLSDFASLNNLEILD-LSDFASLSNLKVLDLSYNSFSGIVPSSIRLMSSL 246

Query: 239  RILSLADNRFNGSI---DIKGKQASSILRVPSFVDLVSLSSWSVGIN------------- 282
            + LSLA N  NGS+   D+     S  L      +L SL    +  N             
Sbjct: 247  KSLSLAGNDLNGSLPNQDLSSNLFSENLSSTLLPNLTSLEYIDLSYNQFEGSFSFSSFAN 306

Query: 283  ------------------------TGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNT 318
                                     G   L+ L+ELD++ N     + P    CL  L +
Sbjct: 307  HSKLQVVILGSYNNKFELHVLFSFVGFCQLNKLQELDLSYNLFQGTLPP----CLNNLTS 362

Query: 319  LYLGGIAMIDGSKVLQS--IGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLV--- 373
            L L  ++    S  L S  + +L SL+ + L + +F+G+       N + L+ ++L    
Sbjct: 363  LRLLDLSSNHLSGNLSSPLLPNLTSLEYIDLSYNHFEGSFSFSSFANHSKLQVVILGSDN 422

Query: 374  -KSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHL 432
             K ++     +  +  F  LK L +  C L G +        P FL +Q  L+ VDLSH 
Sbjct: 423  NKFEVETEYPVGWVPLF-QLKALFLSNCKLTGDI--------PDFLQYQFKLEVVDLSHN 473

Query: 433  NLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIG 492
            NL+G+F NWL+ENNT L+ L+L NNSL G   +P+  + ++ +LD+S N   G +   +G
Sbjct: 474  NLTGRFTNWLLENNTRLEFLVLRNNSLMGQL-LPLRPNTRILSLDISHNQLDGRLQENVG 532

Query: 493  TYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILAL 552
              +  ++ LNLS N F G +PSS A+M  L+ LD+S N  +GE+P ++ +    L IL L
Sbjct: 533  HMIPNIVFLNLSNNGFEGLLPSSIAEMSSLRVLDLSANNFSGEVPKQL-LATKDLVILKL 591

Query: 553  SNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRW 612
            S N   G IFS+ FN+T L  L LD N+F+G +   +S    L  L +S+N++SG+IP  
Sbjct: 592  SYNKFHGEIFSRDFNMTGLDILYLDNNQFMGTLSNVISGSSQLMVLDVSNNYMSGEIPSG 651

Query: 613  LGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLS 672
            +GN++ L  ++M NNN  G +P E  QL  +K LD+S N + G+LPS  S  Y+E +HL 
Sbjct: 652  IGNMTELRTLVMGNNNFRGKLPPEISQLQQMKFLDVSQNALSGSLPSLKSMEYLEHLHLQ 711

Query: 673  KNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQI 732
             N   G +      S  L+TLD+  N L GSIP  I  L +L  LLL  N   G IP  +
Sbjct: 712  GNMFTGLIPRDFLNSSDLLTLDMRDNRLFGSIPNSISALLELRILLLRGNLFSGFIPNHL 771

Query: 733  CQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHE-----AVAPISSSSDDASTYVLPSV 787
            C L ++ L+DLS+N+ SG IP C  +    E   E              D  + YV  +V
Sbjct: 772  CHLTKISLMDLSNNSFSGPIPKCFGDIRFGEMKKENDVFRQFIDFGYGGDSRNLYVGFTV 831

Query: 788  AP---NGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIR 844
                 +     E+  V+F TKN    Y G IL  M G+DLSCN LTGEIP ++G L+ I 
Sbjct: 832  KKWEFDSDVYDEKNEVEFVTKNRHDSYSGDILNFMFGLDLSCNNLTGEIPHKLGKLSWIH 891

Query: 845  ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGK 904
            ALNLSHN L  +IP +FSNL QIESLDLSYN L G+IP +L+ LN L VF VA NN+SG+
Sbjct: 892  ALNLSHNQLKDSIPKSFSNLSQIESLDLSYNKLSGEIPLELVELNFLEVFSVAYNNISGR 951

Query: 905  IPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTATPEAYTENKEGDSLIDMDSFL 964
            +PD  AQF TF+E SYEGNPFLCG  L + C+ +      P    E++     I+   F 
Sbjct: 952  VPDTKAQFGTFDERSYEGNPFLCGTLLKRKCNTSIEPPCAPSQSFESEAKWYDINHVVFF 1011

Query: 965  ITFTVSYGIVIIGIIGVLCINPYWRRRWFYLVEVCMTSCYYFVADNL 1011
             +FT SY ++++G + +L INPYWR RWF  +E C+ SCYYFV DNL
Sbjct: 1012 ASFTTSYIMILLGFVTILYINPYWRHRWFNFIEECIYSCYYFVFDNL 1058

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 369/841 (43%), Positives = 500/841 (59%), Gaps = 74/841 (8%)

Query: 186  LEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLAD 245
            L EL +  N I N     G ER   L+ L+ L L +N  N S  S L GLSSL+ L+L +
Sbjct: 2    LVELRLGGNEIQNFATSTGFERSLRLNKLEILELSFNKINDSTLSFLEGLSSLKHLNLDN 61

Query: 246  NRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLV 305
            N+  GSID+K                            GL  L  L+ELD++ N +N L 
Sbjct: 62   NQLKGSIDMK----------------------------GLCELKQLQELDISYNDLNGLP 93

Query: 306  VPKDYRCLRKLNTLYLGGIAM--IDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHN 363
                  CL  LN L +  I+     G+  L  IGSL S++ L L   +F+  I      N
Sbjct: 94   -----SCLTNLNNLQVLDISFNNFSGNISLSRIGSLTSIRDLKLSDNHFQIPISLGPFFN 148

Query: 364  FTNLEELLLVKSDLHVS-QLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQH 422
             +NL+ L    ++++ S +L+ ++     L+ LS+       A HG  GGTFPKFLY+QH
Sbjct: 149  LSNLKNLNGDHNEIYESTELVHNLIPRFQLQRLSL-------ACHGF-GGTFPKFLYYQH 200

Query: 423  DLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNF 482
            DL+ VDLSH+ + G+FP+WL++NNT L+ L L N+SL GS ++P  SH  L+ LD+S N 
Sbjct: 201  DLQFVDLSHIKIIGEFPSWLLQNNTKLEALYLVNSSLSGSLQLPNDSHVNLSRLDISRNH 260

Query: 483  FRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAI 542
             +  IP +IG Y   L  LNLSRN F+GSIPSS ++M  L  LD+S N L+G IP+++  
Sbjct: 261  IQNQIPTKIGAYFPWLEFLNLSRNYFSGSIPSSISNMSSLGVLDLSNNGLSGNIPEQLVE 320

Query: 543  GCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSD 602
            GC SL  L LSNN+L+G  F + FNL  L  L L GN+  G +P SLS    L  L +S 
Sbjct: 321  GCLSLRGLVLSNNHLKGQFFWRSFNLAYLTDLILSGNQLTGILPNSLSNGSRLEALDVSL 380

Query: 603  NHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFS 662
            N+LSGKIPRW+G +S+L+ + +  NNL G +P  FC                       S
Sbjct: 381  NNLSGKIPRWIGYMSSLQYLDLSENNLYGSLPSSFC-----------------------S 417

Query: 663  PAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANN 722
               + E++LSKNK+EG L   +     L  LDLS+N   G IP  I  L +LS+LLL  N
Sbjct: 418  SRTMTEVYLSKNKLEGSLIGALDGCLSLNRLDLSHNYFGGGIPESIGSLLELSFLLLGYN 477

Query: 723  YIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSS----DD 778
             +EG+IP Q+C+L+++ LIDLSHN+L GHI PCL  T+  +   E     S +S    + 
Sbjct: 478  NLEGKIPSQLCKLEKLSLIDLSHNHLFGHILPCLQPTSKWQRERETSLNPSGNSLGRENR 537

Query: 779  ASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIG 838
                V P   P        ++V+FTTK++SY ++G IL  +SGIDLSCN LTGEIP ++G
Sbjct: 538  GPQIVFP--VPAVEDPSMNKSVEFTTKSISYSFKGIILKYISGIDLSCNNLTGEIPVELG 595

Query: 839  YLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVAN 898
             L+ I+ LNLSHN+LTG IP TFSNLK+IESLDLSYN L G+IP QL+ LN L+ F VA+
Sbjct: 596  NLSNIQVLNLSHNSLTGPIPPTFSNLKEIESLDLSYNNLNGEIPRQLLDLNFLSAFSVAH 655

Query: 899  NNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTATPEAYTENKEGDSLI 958
            NNLSGK P+ VAQFSTF +  YEGNP LCG PL+++C      +  P + T  KE + +I
Sbjct: 656  NNLSGKTPEMVAQFSTFNKSCYEGNPLLCGPPLARNCTRALPPSPLPRSQTHKKEENGVI 715

Query: 959  DMDSFLITFTVSYGIVIIGIIGVLCINPYWRRRWFYLVEVCMTSCYYFVADNL-IPRRFY 1017
            DM++F++TF+V+Y +V++ I  VL INP WRR WFY +   + +CYYF+ DNL +P RF 
Sbjct: 716  DMEAFIVTFSVAYIMVLLTIGSVLYINPRWRRAWFYFIGESINNCYYFLVDNLPVPARFR 775

Query: 1018 R 1018
            R
Sbjct: 776  R 776

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123984|ref|XP_002330258.1| predicted protein [Populus trichocarpa] gi|222871714|gb|EEF08845.1| predicted protein [Populus trichocarpa]

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 407/1047 (38%), Positives = 573/1047 (54%), Gaps = 90/1047 (8%)

Query: 5    KRVWVSELIFILLVVKGWWIE--GCLEQERSALLQLKHFFNDDQ---RLQNWVDAADDEN 59
            K+ WV  L+ +L  V  W+    GCLE ER  LL++K   + +     L +W+D  + E+
Sbjct: 4    KKKWVWLLLTLLTSVGEWYGRCCGCLEDERIGLLEIKALIDPNSVQGELSDWMD--NKED 61

Query: 60   YSDCCQWERVECNKTTGRVIKLDLGDIKNRKNRKSERHLNASLFTPFQQLESLDLSWNNI 119
              +CC+W  + C+ TT RVI+L L  ++ R  R  +  LNASLF PF++L+SLDL    +
Sbjct: 62   IGNCCEWSGIVCDNTTRRVIQLSL--MRARDFRLGDWVLNASLFLPFEELQSLDLGETGL 119

Query: 120  AGCVENEGVERLS-RLNNLKFLLLDSN-YFNNSIFSSLGGLSSLRILSLADNRLNGSIDI 177
             GC ENEG   LS +L  L  L L  N ++++SI S   GLSSL+ L L+ N L GS + 
Sbjct: 120  VGCSENEGFGTLSSKLRKLHVLGLSYNKFYSDSILSCFTGLSSLKSLDLSWNTLTGSANF 179

Query: 178  KGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSS 237
             GL+ LS+                     RL  L NL    L  N +N SIFSSL G SS
Sbjct: 180  YGLNVLSS---------------------RLKKLENL---HLRGNQYNDSIFSSLTGFSS 215

Query: 238  LRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSS---WSVGINTGLDSLSNLEEL 294
            L+ L L+ N   GS  I G   +S      ++D  SL      ++G+   L  LS   E 
Sbjct: 216  LKSLDLSYNMLTGSTSINGTFFNSTTLEELYLDGSSLPLNFLHNIGVLPALKVLS-AGEC 274

Query: 295  DMTNNAINNLVVPKDYRC-LRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFK 353
            D+      N  +P    C L+ L  L+L     ++GS +     +L SL+ L +    F 
Sbjct: 275  DL------NGTLPAQGLCGLKNLEQLFLSE-NNLEGS-LPDCFKNLSSLQLLDVSRNQFI 326

Query: 354  GTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLS----------------- 396
            G I +  L N  +LE + L  +   V   ++   + +SL++ S                 
Sbjct: 327  GNIASSPLTNLLSLEFISLSNNHFQVPISMKPFMNHSSLRFFSSDNNRLVTEPMSFHDLI 386

Query: 397  -----IRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKT 451
                 +   + K +    +  T P FLY+QHDL+ +DLS  +  G FP+WL++NNT L+ 
Sbjct: 387  PKFQLVFFSLSKSSSEALNVET-PSFLYNQHDLRVLDLSQNSFIGMFPSWLLKNNTRLEQ 445

Query: 452  LLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGS 511
            L L  NS FG+ ++  H +  +  +D+S N   G IP  I    S L  L +++N   G 
Sbjct: 446  LFLNENSFFGTLQLQDHPNPDMTAIDISNNNMHGEIPKNICLIFSNLWTLRMAKNGLTGC 505

Query: 512  IPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNL 571
            IPS   +   L  LD+S NQL+    ++      +L  L LSNNNL G + +   N + L
Sbjct: 506  IPSCLGNSSSLGVLDLSNNQLSMVELEQF----ITLTFLKLSNNNLGGQLPASMVNSSRL 561

Query: 572  MRLQLDGNKFIGEI---PKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNN 628
              L L  N F G+I   P  +   + +  L LS+N  SG +PRW  NL+ +  I +  N+
Sbjct: 562  NYLYLSDNNFWGQISDFPSPIKTIWPV--LDLSNNQFSGMLPRWFVNLTQIFAIDLSKNH 619

Query: 629  LEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSP 688
              GPIP+EFC+LD LK LDLS+N +F ++PSCF+P +I  +HLSKN++ G L    + S 
Sbjct: 620  FNGPIPVEFCKLDELKYLDLSDNNLFDSIPSCFNPPHITHVHLSKNRLSGPLTYGFYNSS 679

Query: 689  YLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNL 748
             L+TLDL  N   GSI  WI  L  LS LLL  N  +GE  +Q+C L+++ ++D+S N L
Sbjct: 680  SLVTLDLRDNNFTGSISNWIGNLSSLSVLLLRANNFDGEFLVQLCLLEQLSILDVSQNQL 739

Query: 749  SGHIPPCLVNTALNEGYHEAVAPI-----SSSSDDASTYVLPSVAPNGS---PIGEEETV 800
            SG +P CL N +  E Y +A         S+  + A      + A  GS   PI  EE +
Sbjct: 740  SGPLPSCLGNLSFKESYEKASVDFGFHFGSTPIEKAYYEFNQTRALLGSSYIPITTEEVI 799

Query: 801  QFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTT 860
            +FT K+M Y Y+G+IL  MSGIDLS NK +G IP ++G L+ + ALNLSHNNLTG+IP T
Sbjct: 800  EFTAKSMYYGYKGKILSFMSGIDLSSNKFSGAIPPELGNLSELLALNLSHNNLTGSIPAT 859

Query: 861  FSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSY 920
            FSNLKQIES DLSYN L G IP +L  + TL VF VA+NNLSG+ P+R  QF TF+E SY
Sbjct: 860  FSNLKQIESFDLSYNNLDGVIPHKLYEITTLEVFSVAHNNLSGETPERKYQFGTFDESSY 919

Query: 921  EGNPFLCGLPLSKSCDDNGLTTATPEAYTENKEGDSLIDMDSFLITFTVSYGIVIIGIIG 980
            EGNPFLCG PL  +C +    + +     + +E D  IDM+ F I+  V Y +V++GI  
Sbjct: 920  EGNPFLCGPPLQNNCSEE--ESPSLPMPNDKQEDDGFIDMNFFYISLGVGYIVVVMGIAA 977

Query: 981  VLCINPYWRRRWFYLVEVCMTSCYYFV 1007
            VL INPYWR  WF  ++ C+ +C+ F+
Sbjct: 978  VLYINPYWRCGWFNFIDYCIDTCFNFL 1004

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1021
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.796	0.832	0.337	1.1e-120
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.684	0.645	0.384	3.4e-109
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.784	0.801	0.347	1.6e-104
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.713	0.817	0.356	6.7e-104
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.681	0.744	0.357	8.2e-99
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.781	0.826	0.299	3.2e-81
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.781	0.878	0.302	1.1e-69
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.727	0.593	0.294	2.1e-59
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.650	0.531	0.293	2.2e-58
TAIR|locus:2096349	860	RLP31 "receptor like protein 3	0.604	0.717	0.293	6.1e-55

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 968 (345.8 bits), Expect = 1.1e-120, Sum P(2) = 1.1e-120
 Identities = 295/873 (33%), Positives = 417/873 (47%)

Query:   169 NRLNGSID-IKGLDSLS---NLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYXXX 224
             N  NG  D ++G +SL    NLE LD+S N+ +N + P  L   ++L+ L F++ +Y   
Sbjct:   119 NEFNGLFDDVEGYESLRRLRNLEILDLSSNSFNNSIFPF-LNAATSLTTL-FIQSNYIGG 176

Query:   225 XXXXXXXXXXXXXXXXXXXADNRFNGSI------------DIKGKQASSILRVPSFVDLV 272
                                    +NGSI            D+     SS++ +     L 
Sbjct:   177 PLPIKELKNLTKLELLDLSRSG-YNGSIPEFTHLEKLKALDLSANDFSSLVELQELKVLT 235

Query:   273 SLSSWSVGINTGLDS---------LSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG 323
             +L    +  N  LD          + NL +LD+  N     + P     L KL  L L  
Sbjct:   236 NLEVLGLAWNH-LDGPIPKEVFCEMKNLRQLDLRGNYFEGQL-PVCLGNLNKLRVLDLSS 293

Query:   324 IAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLL 383
                + G+ +  S  SL SL+ L L   NF+G      L N T L+   L  +    S++L
Sbjct:   294 -NQLSGN-LPASFNSLESLEYLSLSDNNFEGFFSLNPLANLTKLKVFRLSST----SEML 347

Query:   384 QSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLV 443
             Q       L    +    L     G+     P FL +Q +L+ VDLS   LSG  P WL+
Sbjct:   348 QVETESNWLPKFQLTVAALPFCSLGK----IPNFLVYQTNLRLVDLSSNRLSGDIPTWLL 403

Query:   444 EXXXXXXXXXXXXXXXFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNL 503
             E               F  F++P   H KL  LD S N   G +P  IG  L  L+ +N 
Sbjct:   404 ENNPELKVLQLKNNS-FTIFQIPTIVH-KLQVLDFSANDITGVLPDNIGHVLPRLLHMNG 461

Query:   504 SRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFS 563
             S N F G++PSS  +M  +  LD+SYN  +GE+P  +  GCFSL  L LS+N+  G I  
Sbjct:   462 SHNGFQGNLPSSMGEMNDISFLDLSYNNFSGELPRSLLTGCFSLITLQLSHNSFSGPILP 521

Query:   564 KKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLG-NLSALEDI 622
              +  LT+L+ L++  N F GEI   L     L     S+N L+G I   +  + S L  +
Sbjct:   522 IQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASNNRLTGLISSSIPPDSSHLIML 581

Query:   623 IMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCF-SPAYIEEIHLSKNKIEGRLE 681
             ++ NN LEG +P     + +L  LDLS N + G LPS   +  Y  +I L  N   G L 
Sbjct:   582 LLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSVVNSMYGIKIFLHNNSFTGPLP 641

Query:   682 SIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLI 741
               +  + Y+  LDL  N L GSIP +++    ++ LL  NN + G IP ++C L  +RL+
Sbjct:   642 VTLLENAYI--LDLRNNKLSGSIPQFVNTGKMITLLLRGNN-LTGSIPRKLCDLTSIRLL 698

Query:   742 DLSHNNLSGHIPPCL--VNTALNEGYHEAVAPISSSSDDA-------STYVLPSVAPNGS 792
             DLS N L+G IPPCL  ++T L EG   +      S  D+       ST+++        
Sbjct:   699 DLSDNKLNGVIPPCLNHLSTELGEGIGLSGFSQEISFGDSLQMEFYRSTFLVDEFMLYYD 758

Query:   793 PIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNN 852
                    ++F  K     + G  L  M G+DLS N+L+G IP ++G L+++RALNLS N 
Sbjct:   759 STYMIVEIEFAAKQRYDSFSGGTLDYMYGLDLSSNELSGVIPAELGDLSKLRALNLSRNL 818

Query:   853 LTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQF 912
             L+ +IP  FS LK IESLDLSYN+L G IP QL  L +LAVF V+ NNLSG IP    QF
Sbjct:   819 LSSSIPANFSKLKDIESLDLSYNMLQGNIPHQLTNLTSLAVFNVSFNNLSGIIPQG-GQF 877

Query:   913 STFEEDSYEGNPFLCGLPLSKSCDDNGLTTATPEAYTENKEGD---SLIDMDSFLITFTV 969
             +TF ++SY GNP LCG P  +SC+    T        E +E D   + IDM     T   
Sbjct:   878 NTFNDNSYLGNPLLCGTPTDRSCEGKKNTKEADNGGEEEEEDDDDEAAIDMVVLYWTTGS 937

Query:   970 SYXXXXXXXXXXLCINPYWRRRWFYLVEVCMTS 1002
             +Y          +C +  WRR W  +V+  + S
Sbjct:   938 TYAIALIGILVLMCFDCPWRRTWLCIVDAFIAS 970

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 1079 (384.9 bits), Expect = 3.4e-109, P = 3.4e-109
 Identities = 283/736 (38%), Positives = 379/736 (51%)

Query:   284 GLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQS-IGSLPS- 341
             G+  L  L ELD+++NA+ +L  P     L  L TL L     ++G+  L S +  LPS 
Sbjct:   353 GICRLMKLRELDLSSNALTSL--PYCLGNLTHLRTLDLSN-NQLNGN--LSSFVSGLPSV 407

Query:   342 LKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLL--QSIASFTSLKYLSIRG 399
             L+ L LL  NF G+ +   L N T L    L  S + V Q+    S A    LK L +  
Sbjct:   408 LEYLSLLDNNFDGSFLFNSLVNQTRLTVFKL-SSKVGVIQVQTESSWAPLFQLKMLYLSN 466

Query:   400 CVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVEXXXXXXXXXXXXXXX 459
             C L        G T   FL HQ DL  VDLSH  L+G FP WLV+               
Sbjct:   467 CSL--------GSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNS- 517

Query:   460 FGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADM 519
                 ++PI  H  L  LD+S+N     I  +IG     L  +N S N F G+IPSS  +M
Sbjct:   518 LTKLQLPILVHG-LQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEM 576

Query:   520 KMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGN 579
             K L+ LD+S N L G++P     GC+SL +L LSNN LQG IFSK  NLT L+ L LDGN
Sbjct:   577 KSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGN 636

Query:   580 KFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQ 639
              F G + + L K   L  L +SDN  SG +P W+G +S L  + M  N L+GP P    Q
Sbjct:   637 NFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPF-LRQ 695

Query:   640 LDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNC 699
               +++++D+S+N+  G++P   +   + E+ L  N+  G +   +  +  L  LDL  N 
Sbjct:   696 SPWVEVMDISHNSFSGSIPRNVNFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNN 755

Query:   700 LHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNT 759
               G I   ID+  +L  LLL NN  +  IP +ICQL EV L+DLSHN   G IP C    
Sbjct:   756 FSGKILNTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKM 815

Query:   760 ALNEGYHEAVAPISSSSDDASTYVLPSV-----------APNGSPIGEEETVQFTTKNMS 808
             +     ++    + +  D +    LP               NG        V F TK+  
Sbjct:   816 SFGAEQNDRTMSLVADFDFSYITFLPHCQYGSHLNLDDGVRNGYQPKPATVVDFLTKSRY 875

Query:   809 YYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIE 868
               YQG IL  M G+DLS N+L+GEIP +IG L  IR+LNLS N LTG+IP + S LK +E
Sbjct:   876 EAYQGDILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLE 935

Query:   869 SLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCG 928
             SLDLS N L G IPP L  LN+L    ++ NNLSG+IP +     TF+E SY GN  LCG
Sbjct:   936 SLDLSNNKLDGSIPPALADLNSLGYLNISYNNLSGEIPFK-GHLVTFDERSYIGNAHLCG 994

Query:   929 LPLSKSCDDNGL----TTATPEAYTENKEGDSLIDMDSFLITFTVSYXXXXXXXXXXLCI 984
             LP +K+C    +    + +T     EN+E  ++IDM  F  T    Y          L I
Sbjct:   995 LPTNKNCISQRVPEPPSVSTHAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFLYI 1054

Query:   985 NPYWRRRWFYLVEVCM 1000
             +  W R WFY V++C+
Sbjct:  1055 DSRWSREWFYRVDLCV 1070

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 1035 (369.4 bits), Expect = 1.6e-104, P = 1.6e-104
 Identities = 296/852 (34%), Positives = 430/852 (50%)

Query:   169 NRLNGSIDIKGLDSLSN---LEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRL-DYXXX 224
             NR NGSI  +  +SL     LE LD+S N  ++ + P     L++ ++LK L L      
Sbjct:   131 NRFNGSIPTQDYNSLRRFRKLEILDLSDNLFNSRIFPF----LNSATSLKSLSLWGNNMG 186

Query:   225 XXXXXXXXXXXXXXXXXXXADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSV-GINT 283
                                + NRFNGSI ++   A   L+     D    SS  + G   
Sbjct:   187 GPFPAKELRDLTNVELLDLSRNRFNGSIPVRALFALRKLKALDLSDNEFSSSVELQGKFA 246

Query:   284 GLDSLS------NLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIG 337
                 LS      N+EEL ++NN +     P     L  L  L L     + G+ V  ++ 
Sbjct:   247 KTKPLSGTCPWKNMEELKLSNNKLAGQF-PLCLTSLTGLRVLDLSS-NQLTGN-VPSALA 303

Query:   338 SLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSI 397
             +L SL+ L L   NF+G      L    NL +L +++ D   + L     +    K+  +
Sbjct:   304 NLESLEYLSLFGNNFEGFF---SLGLLANLSKLKVLRLDSQSNSLEVEFETSWKPKFQLV 360

Query:   398 RGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVEXXXXXXXXXXXXX 457
                V+  AL   +    P FL HQ DL +VDLS   + G FP+WL+E             
Sbjct:   361 ---VI--ALRSCNLEKVPHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNN 415

Query:   458 XXFGSFRMPIHSHQKLATLDVSTNFFRGHIPVE-IGTYLSGLMDLNLSRNAFNGSIPSSF 516
               F SF++P  +H  L  L+VS N F  H+ ++  G  L  L+ +NL+ N F G++PSS 
Sbjct:   416 S-FTSFQLPKSAHN-LLFLNVSVNKFN-HLFLQNFGWILPHLVCVNLAYNGFQGNLPSSL 472

Query:   517 ADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQL 576
              +MK ++ LD+S+N+  G++P R   GC++L IL LS+N L G +F +  N T L  + +
Sbjct:   473 DNMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSM 532

Query:   577 DGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIE 636
             D N F G I K       L  L +S+N L+G IP W+G    L  + + NN LEG IP  
Sbjct:   533 DNNLFTGNIGKGFRSLPSLNVLDISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTS 592

Query:   637 FCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHL-SKNKIEGRLESIIHYSPYLMTLDL 695
                + YL++LDLS+N + G +P   S  Y   + L   N + G +   +  +  ++ LDL
Sbjct:   593 LFNISYLQLLDLSSNRLSGDIPPHVSSIYHGAVLLLQNNNLSGVIPDTLLLN--VIVLDL 650

Query:   696 SYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPC 755
               N L G++P +I+    +S LLL  N   G+IP Q C L  ++L+DLS+N  +G IP C
Sbjct:   651 RNNRLSGNLPEFINT-QNISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSIPSC 709

Query:   756 LVNTA--LNEG---YHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEET---VQFTTKNM 807
             L NT+  L +G   Y   V     ++ D   +    +    + + E  +   ++F TK+ 
Sbjct:   710 LSNTSFGLRKGDDSYRYDVPSRFGTAKDPVYFESLLMIDEFNMVNETNSQTKIEFATKHR 769

Query:   808 SYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQI 867
                Y G  L  + G+DLS N+L+GEIP ++G L  + ALNLSHNNL+G I  +FS LK +
Sbjct:   770 YDAYMGGNLKLLFGMDLSENELSGEIPVELGGLVELEALNLSHNNLSGVILESFSGLKNV 829

Query:   868 ESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 927
             ESLDLS+N L G IP QL  + +LAVF V+ NNLSG +P    QF+TFE  SY GNP LC
Sbjct:   830 ESLDLSFNRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQG-RQFNTFETQSYFGNPLLC 888

Query:   928 GLPLSKSCDDNGLTTATPEAYTENK-EGD-SLIDMDSFLITFTVSYXXXXXXXXXXLCIN 985
             G  +  SC  N      P   T+N  E D S +DM+SF  +F  +Y          L  +
Sbjct:   889 GKSIDISCASNNFH---P---TDNGVEADESTVDMESFYWSFVAAYVTILLGILASLSFD 942

Query:   986 PYWRRRWFYLVE 997
               W R WFY+V+
Sbjct:   943 SPWSRAWFYIVD 954

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1029 (367.3 bits), Expect = 6.7e-104, P = 6.7e-104
 Identities = 273/765 (35%), Positives = 400/765 (52%)

Query:   246 NRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINT-GLDSLSNLEELDMTNNAINNL 304
             N+F+G +     Q  + LR    +DL S + +S  +   G+  L  L+EL ++ N     
Sbjct:   138 NKFSGQLPT---QELTNLRNLRALDL-SNNKFSGSLQKQGICRLEQLQELRLSRNRFEG- 192

Query:   305 VVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNF 364
              +P  +    KL  L L    +    K+   I    S++ L LL  +F+G      L   
Sbjct:   193 EIPLCFSRFSKLRVLDLSSNHL--SGKIPYFISDFKSMEYLSLLDNDFEGLF---SLGLI 247

Query:   365 TNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDL 424
             T L EL + K     S +LQ + +  S    S    ++   L   + G  P FL++Q +L
Sbjct:   248 TELTELKVFKLSSR-SGMLQIVETNVSGGLQSQLSSIM---LSHCNLGKIPGFLWYQQEL 303

Query:   425 KNVDLSHLNLSGKFPNWLVEXXXXXXXXXXXXXXXFGSFRMPIHSHQKLATLDVSTNFFR 484
             + +DLS+  LSG FP WL+E               F +  +P  + ++L  LD+S N F 
Sbjct:   304 RVIDLSNNILSGVFPTWLLENNTELQALLLQNNS-FKTLTLP-RTMRRLQILDLSVNNFN 361

Query:   485 GHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGC 544
               +P ++G  L+ L  LNLS N F G++PSS A M+ ++ +D+SYN  +G++P  +  GC
Sbjct:   362 NQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARMENIEFMDLSYNNFSGKLPRNLFTGC 421

Query:   545 FSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNH 604
             +SL  L LS+N   G I  K  + T+L+ L +D N F G+IP++L    +L  + LS+N 
Sbjct:   422 YSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTLLNLRMLSVIDLSNNL 481

Query:   605 LSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPA 664
             L+G IPRWLGN   LE + + NN L+G IP     + YL +LDLS N + G+LP   S  
Sbjct:   482 LTGTIPRWLGNFF-LEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFLSGSLPLRSSSD 540

Query:   665 YIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYI 724
             Y   + L  N + G +   + Y   L  LDL  N L G+IP +    P +S +LL  N +
Sbjct:   541 YGYILDLHNNNLTGSIPDTLWYG--LRLLDLRNNKLSGNIPLFRST-PSISVVLLRENNL 597

Query:   725 EGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVA----PISSSSDDAS 780
              G+IP+++C L  VR++D +HN L+  IP C+ N +   G H        P S  S+   
Sbjct:   598 TGKIPVELCGLSNVRMLDFAHNRLNESIPSCVTNLSFGSGGHSNADSDWYPASLLSNFME 657

Query:   781 TYV---LPS--VAPNGS---PIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGE 832
              Y      S  V+   S    +     V+F  K     Y    L  M G+DLS N+L+G 
Sbjct:   658 IYTEVYYESLIVSDRFSLDYSVDFNVQVEFAVKQRYDLYMRGTLNQMFGLDLSSNELSGN 717

Query:   833 IPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLA 892
             IP ++G L R+R+LNLS N+L+G+IP +FSNL+ IESLDLS+N L G IP QL +L +L 
Sbjct:   718 IPEELGDLKRVRSLNLSRNSLSGSIPGSFSNLRSIESLDLSFNKLHGTIPSQLTLLQSLV 777

Query:   893 VFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTATPEAYTENK 952
             VF V+ NNLSG IP    QF+TF E SY GN  LCG P  +SC   G T ++ + Y ++ 
Sbjct:   778 VFNVSYNNLSGVIPQG-KQFNTFGEKSYLGNFLLCGSPTKRSC--GGTTISSGKEYEDDD 834

Query:   953 EGDSLIDMDSFLITFTVSYXXXXXXXXXXLCINPYWRRRWFYLVE 997
             E   L+D+     +   +Y          LC +  WRR WF LV+
Sbjct:   835 ES-GLLDIVVLWWSLGTTYVTVMMGFLVFLCFDSPWRRAWFCLVD 878

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
 Identities = 263/735 (35%), Positives = 373/735 (50%)

Query:   285 LDSLSNLEELDMTNNAINNLVVPKDYRC-LRKLNTLYLGGIAMIDGSKVLQSIGSLPSLK 343
             L +L NLE L +  N ++   +P +  C L+ L  L L G   +   ++   +GSL  L+
Sbjct:   217 LQNLINLEVLGLAQNHVDG-PIPIEVFCKLKNLRDLDLKGNHFV--GQIPLCLGSLKKLR 273

Query:   344 TLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSI-RGCVL 402
              L L      G + +    +  +LE L L  ++   S  L  + + T+LK++ + R C L
Sbjct:   274 VLDLSSNQLSGDLPSS-FSSLESLEYLSLSDNNFDGSFSLNPLTNLTNLKFVVVLRFCSL 332

Query:   403 KGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVEXXXXXXXXXXXXXXXFGS 462
             +           P FL +Q  L+ VDLS  NLSG  P WL+                F  
Sbjct:   333 E---------KIPSFLLYQKKLRLVDLSSNNLSGNIPTWLL-TNNPELEVLQLQNNSFTI 382

Query:   463 FRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKML 522
             F +P   H  L   D S N   G  P ++   L  L+ LN S N F G  P+S  +MK +
Sbjct:   383 FPIPTMVHN-LQIFDFSANNI-GKFPDKMDHALPNLVRLNGSNNGFQGYFPTSIGEMKNI 440

Query:   523 KSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFI 582
               LD+SYN  +G++P     GC S+  L LS+N   G    ++ N  +L  L++D N F 
Sbjct:   441 SFLDLSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFSGRFLPRETNFPSLDVLRMDNNLFT 500

Query:   583 GEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDY 642
             G I   LS   +L  L +S+N LSG IPRWL     L+ +++ NN LEG IP     + +
Sbjct:   501 GNIGGGLSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPF 560

Query:   643 LKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHG 702
             L  LDLS N   G LPS         + L  N   G +   +  S  +  LDL  N L G
Sbjct:   561 LSFLDLSGNQFSGALPSHVDSELGIYMFLHNNNFTGPIPDTLLKS--VQILDLRNNKLSG 618

Query:   703 SIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALN 762
             SIP + D    ++ LLL  N + G IP ++C L  VRL+DLS N L+G IP CL N +  
Sbjct:   619 SIPQF-DDTQSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSNLSFG 677

Query:   763 EGYHEAVA----P--ISSSSDDA---STYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQG 813
                 +A+A    P  + +S +     ST+++  +  + S   E E ++F  K     Y G
Sbjct:   678 RLQEDAMALNIPPSFLQTSLEMELYKSTFLVDKIEVDRSTYQETE-IKFAAKQRYDSYSG 736

Query:   814 R------ILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQI 867
             R      IL  M G+DLS N+L+G IPT++G L ++R LNLSHN+L G+IP++FS L  +
Sbjct:   737 RSEFSEGILRLMYGMDLSNNELSGVIPTELGDLLKLRTLNLSHNSLLGSIPSSFSKLIDV 796

Query:   868 ESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 927
             ESLDLS+N+L G IP  L  L +LAVF V++NNLSG IP    QF+TFEE+SY GNP LC
Sbjct:   797 ESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNLSGIIPQG-RQFNTFEEESYLGNPLLC 855

Query:   928 GLPLSKSCDDNGLTTATPEAYTENKEGDSLIDMDSFLITFTVSYXXXXXXXXXXLCINPY 987
             G P S+SC+ N           E ++  + IDM  F  +    Y          +C +  
Sbjct:   856 GPPTSRSCETNKSPEEADNGQ-EEEDDKAAIDMMVFYFSTASIYVTALIGVLVLMCFDCP 914

Query:   988 WRRRWFYLVEVCMTS 1002
             WRR W  +V+  + S
Sbjct:   915 WRRAWLRIVDAFIAS 929

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
 Identities = 263/877 (29%), Positives = 412/877 (46%)

Query:   167 ADNRLNGSID----IKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYX 222
             + +R +G  D     K L  L  LE LD++ N  +N +    L   ++L+ L FLR +  
Sbjct:   111 SSSRCSGLFDDVEGYKSLRKLRKLEILDLASNKFNNSIF-HFLSAATSLTTL-FLRSN-N 167

Query:   223 XXXXXXXXXXXXXXXXXXXXXADNRFNGSIDIKGKQASSILRVPSFVDLVSLS-SWSV-- 279
                                  + NRFNGSI I+  + SS+ ++ + +DL     S S+  
Sbjct:   168 MDGSFPAKELRDLTNLELLDLSRNRFNGSIPIQ--ELSSLRKLKA-LDLSGNEFSGSMEL 224

Query:   280 ----------GINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDG 329
                        I +G+  L+N++ELD++ N +   + P     L  L  L L     + G
Sbjct:   225 QGKFCTDLLFSIQSGICELNNMQELDLSQNKLVGHL-PSCLTSLTGLRVLDLSS-NKLTG 282

Query:   330 SKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSI--A 387
             + V  S+GSL SL+ L L   +F+G+     L N +NL  L L      +  L +S    
Sbjct:   283 T-VPSSLGSLQSLEYLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSESSWKP 341

Query:   388 SFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVEXXX 447
              F  L  +++R C ++           P FL HQ DL++VDLS  N+SGK P+WL+    
Sbjct:   342 KF-QLSVIALRSCNMEKV---------PHFLLHQKDLRHVDLSDNNISGKLPSWLL-ANN 390

Query:   448 XXXXXXXXXXXXFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNA 507
                         F SF++P  +H  L  LDVS N F    P  IG     L  LN S+N 
Sbjct:   391 TKLKVLLLQNNLFTSFQIPKSAHN-LLFLDVSANDFNHLFPENIGWIFPHLRYLNTSKNN 449

Query:   508 FNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFN 567
             F  ++PSS  +M  ++ +D+S N   G +P     GC+S+ IL LS+N L G IF +  N
Sbjct:   450 FQENLPSSLGNMNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTN 509

Query:   568 LTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNN 627
              TN++ L +D N F G+I + L     L  L +S+N+L+G IP W+G L +L  +++ +N
Sbjct:   510 FTNILGLFMDNNLFTGKIGQGLRSLINLELLDMSNNNLTGVIPSWIGELPSLTALLISDN 569

Query:   628 NLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYS 687
              L+G IP+       L++LDLS N++ G +P          + L  NK+ G +   +  +
Sbjct:   570 FLKGDIPMSLFNKSSLQLLDLSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDTLLAN 629

Query:   688 PYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNN 747
               +  LDL  N   G IP +I+ +  +S LLL  N   G+IP Q+C L  ++L+DLS+N 
Sbjct:   630 VEI--LDLRNNRFSGKIPEFIN-IQNISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNR 686

Query:   748 LSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNM 807
             L+G IP CL NT+   G  E     S   D   ++  PS   NG  + ++ +   + KN 
Sbjct:   687 LNGTIPSCLSNTSFGFG-KECT---SYDYDFGISF--PSDVFNGFSLHQDFS---SNKNG 737

Query:   808 SYYYQGRILMSMSGIDLSCNKLTG-EIPTQIGY-------LTRIRALNLSHNNLTGTIPT 859
               Y++  + +    +D      T  E  T+  Y       L  +  ++LS N L+G IP 
Sbjct:   738 GIYFKSLLTLDPLSMDYKAATQTKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPV 797

Query:   860 TFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDS 919
              F  L ++ +L+LS+N L G IP  +  +  +  F ++ N L G+IP ++ + ++     
Sbjct:   798 EFGGLLELRALNLSHNNLSGVIPKSISSMEKMESFDLSFNRLQGRIPSQLTELTSLSVFK 857

Query:   920 YEGNPFLCGLPLSKSCDD--------NGLTTATP-------EAYTENKEG----DSLIDM 960
                N     +P  +  +         N L    P        +Y E   G    +S+IDM
Sbjct:   858 VSHNNLSGVIPQGRQFNTFDAESYFGNRLLCGQPTNRSCNNNSYEEADNGVEADESIIDM 917

Query:   961 DSFLITFTVSYXXXXXXXXXXLCINPYWRRRWFYLVE 997
              SF ++F  +Y          L  +  W R WFY V+
Sbjct:   918 VSFYLSFAAAYVTILIGILASLSFDSPWSRFWFYKVD 954

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 257/850 (30%), Positives = 386/850 (45%)

Query:   175 IDIKGLDSLSNLEELDMSYNAIDNLVVP-QGLERLSTLSNLKFLRLDYXXXXXXXXXXXX 233
             +++  L     +  LD+S + ++ LV   +G + L  L NL+ L                
Sbjct:    83 LNLSLLHPFEEVRSLDLSNSRLNGLVDDVEGYKSLRRLRNLQILNFSSNEFNNSIFPFLN 142

Query:   234 XXXXXXXXXXADNRFNGSIDIKGKQASSILRVPSFVDLV-SLSSWSVGINTGLDSLSNLE 292
                         N   G I +K  +  ++  +   +DL  +    S+ +      L  L+
Sbjct:   143 AATSLTTLSLRRNNMYGPIPLK--ELKNLTNL-ELLDLSGNRIDGSMPVRE-FPYLKKLK 198

Query:   293 ELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNF 352
              LD+++N I + +  + +  ++ L  L L GI  + G   L   G+L  L+ L L     
Sbjct:   199 ALDLSSNGIYSSMEWQVFCEMKNLQELDLRGINFV-GQLPL-CFGNLNKLRFLDLSSNQL 256

Query:   353 KGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGG 412
              G I      +F++LE L      L +S    S   F SL  L+    +       +D  
Sbjct:   257 TGNIPP----SFSSLESL----EYLSLSD--NSFEGFFSLNPLTNLTKLKVFIFSSKDDM 306

Query:   413 TFPKFLYHQHDLKNVDLSHLNLSG--KFPNWLVEXXXXXXXXXXXXXXXFGSFRMPIHSH 470
                K       L  + +  L L    K PN+L+                       + ++
Sbjct:   307 VQVKIESTWQPLFQLSVLVLRLCSLEKIPNFLMYQKNLHVVDLSGNRISGIIPTWLLENN 366

Query:   471 QKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFAD-MKMLKSLDISY 529
              +L  L +  N F      ++ T +  L  L+ S N   G  P +F   +  L  ++ S 
Sbjct:   367 PELEVLQLKNNSFT---IFQMPTSVHNLQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSN 423

Query:   530 NQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKF--NLTNLMRLQLDGNKFIGE-IP 586
             N   G  P  M    +++  L LS NNL G +  + F  +  +L  LQL  NKF G  +P
Sbjct:   424 NGFQGNFPSSMG-EMYNISFLDLSYNNLSGEL-PQSFVSSCFSLSILQLSHNKFSGHFLP 481

Query:   587 KSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKIL 646
             +  +   L+  L +++N  +GKI   L  L  L  + M NN LEG +P      +YL  L
Sbjct:   482 RQTNFTSLIV-LRINNNLFTGKIGVGLLTLVDLCILDMSNNFLEGELPPLLLVFEYLNFL 540

Query:   647 DLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPT 706
             DLS N + G LPS  S   +  +H   N   G +      S  +  LDL  N L G+IP 
Sbjct:   541 DLSGNLLSGALPSHVSLDNVLFLH--NNNFTGPIPDTFLGS--IQILDLRNNKLSGNIPQ 596

Query:   707 WIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALN---- 762
             ++D    +S+LLL  N + G IP  +C+  ++RL+DLS N L+G IP C  N +      
Sbjct:   597 FVDT-QDISFLLLRGNSLTGYIPSTLCEFSKMRLLDLSDNKLNGFIPSCFNNLSFGLARK 655

Query:   763 ---EGYHEAVAPISSSSDD-ASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRI--- 815
                  Y+ AVA  S       ST+V+ +   + S   E + V+F TK     Y G     
Sbjct:   656 EEITNYYVAVALESFYLGFYKSTFVVENFRLDYSNYFEID-VKFATKQRYDSYIGAFQFS 714

Query:   816 ---LMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDL 872
                L SM G+DLS N+L+G IP ++G L ++RALNLSHN L+  IP +FS L+ IESLDL
Sbjct:   715 EGTLNSMYGLDLSSNELSGVIPAELGDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDL 774

Query:   873 SYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLS 932
             SYN+L G IP QL  L +LA+F V+ NNLSG IP    QF+TF+E+SY GNP LCG P  
Sbjct:   775 SYNMLQGSIPHQLTNLTSLAIFNVSYNNLSGIIPQG-KQFNTFDENSYLGNPLLCGPPTD 833

Query:   933 KSCDDNGLTTATPEAYTENKEGDSLIDMDSFLITFTVSYXXXXXXXXXXLCINPYWRRRW 992
              SC+    +        E+ + +  IDM  F  +   +Y          +C++  WRR W
Sbjct:   834 TSCETKKNSEENANGGEEDDK-EVAIDMLVFYWSTAGTYVTALIGILVLMCVDCSWRRAW 892

Query:   993 FYLVEVCMTS 1002
               LV+  + S
Sbjct:   893 LRLVDAFIAS 902

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 637 (229.3 bits), Expect = 2.1e-59, P = 2.1e-59
 Identities = 238/807 (29%), Positives = 370/807 (45%)

Query:   171 LNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYXXXXXXXXX 230
             L GSI    +   +NL  +D+S N +    +P  L  LS  S+L+ L L           
Sbjct:    83 LTGSIS-PSIGRFNNLIHIDLSSNRLVG-PIPTTLSNLS--SSLESLHLFSNLLSGDIPS 138

Query:   231 XXXXXXXXXXXXXADNRFNGSI-----DIKGKQ----ASSILR--VPS-FVDLVSLSSWS 278
                           DN  NG+I     ++   Q    AS  L   +PS F  LV L +  
Sbjct:   139 QLGSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIPSRFGRLVQLQTLI 198

Query:   279 VGINTGLDS-----LSNLEELDMTNNAINNL--VVPKDYRCLRKLNTLYLGGIAMIDGSK 331
             +  N  L+      + N   L +   A N L   +P +   L+ L TL LG  +     +
Sbjct:   199 LQDNE-LEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSF--SGE 255

Query:   332 VLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTS 391
             +   +G L S++ L L+    +G ++ + L    NL+ L L  ++L    + +       
Sbjct:   256 IPSQLGDLVSIQYLNLIGNQLQG-LIPKRLTELANLQTLDLSSNNL-TGVIHEEFWRMNQ 313

Query:   392 LKYLSIRGCVLKGALHGQDGGTFPKFLYHQH-DLKNVDLSHLNLSGKFPNWLVEXXXXXX 450
             L++L +     K  L     G+ PK +   +  LK + LS   LSG+ P  +        
Sbjct:   314 LEFLVLA----KNRL----SGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKL 365

Query:   451 XXXXXXXXXFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNG 510
                       G     +    +L  L ++ N   G +   I   L+ L +  L  N   G
Sbjct:   366 LDLSNNTLT-GQIPDSLFQLVELTNLYLNNNSLEGTLSSSISN-LTNLQEFTLYHNNLEG 423

Query:   511 SIPSSFADMKMLKSLDISYNQLTGEIPDRMAIG-CFSLEILALSNNNLQGHIFSKKFNLT 569
              +P     +  L+ + +  N+ +GE+P  + IG C  L+ +    N L G I S    L 
Sbjct:   424 KVPKEIGFLGKLEIMYLYENRFSGEMP--VEIGNCTRLQEIDWYGNRLSGEIPSSIGRLK 481

Query:   570 NLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNL 629
             +L RL L  N+ +G IP SL  C+ +  + L+DN LSG IP   G L+ALE  ++ NN+L
Sbjct:   482 DLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSL 541

Query:   630 EGPIPIEFCQLDYLKILDLSNNTIFGTL-PSCFSPAYIEEIHLSKNKIEGRLESIIHYSP 688
             +G +P     L  L  ++ S+N   G++ P C S +Y+    +++N  EG +   +  S 
Sbjct:   542 QGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLS-FDVTENGFEGDIPLELGKST 600

Query:   689 YLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNL 748
              L  L L  N   G IP    ++ +LS L ++ N + G IP+++   K++  IDL++N L
Sbjct:   601 NLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYL 660

Query:   749 SGHIP------PCLVNTALNEGYHEAVAPISSSS-DDASTYVLPSVAPNGS-P--IGEEE 798
             SG IP      P L    L+        P    S  +  T  L   + NGS P  IG  +
Sbjct:   661 SGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQ 720

Query:   799 TVQ---FTTKNMSYYYQGRI--LMSMSGIDLSCNKLTGEIPTQIGYLTRIR-ALNLSHNN 852
              +         +S      I  L  +  + LS N LTGEIP +IG L  ++ AL+LS+NN
Sbjct:   721 ALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNN 780

Query:   853 LTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQF 912
              TG IP+T S L ++ESLDLS+N L+G++P Q+  + +L    ++ NNL GK+     QF
Sbjct:   781 FTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKK---QF 837

Query:   913 STFEEDSYEGNPFLCGLPLSKSCDDNG 939
             S ++ D++ GN  LCG PLS  C+  G
Sbjct:   838 SRWQADAFVGNAGLCGSPLSH-CNRAG 863

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 628 (226.1 bits), Expect = 2.2e-58, P = 2.2e-58
 Identities = 207/706 (29%), Positives = 343/706 (48%)

Query:   251 SIDIKGKQASSILRVPSFVDLVSLSSWSVG-INTGLDSLSNLEELDMTNNAINNLVVPKD 309
             S  + G   S + R+     L+   ++  G I   L + S+L       N +N   +P +
Sbjct:   176 SCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNG-TIPAE 234

Query:   310 YRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEE 369
                L  L  L L   ++    ++   +G +  L+ L L+    +G ++ + L +  NL+ 
Sbjct:   235 LGRLENLEILNLANNSLT--GEIPSQLGEMSQLQYLSLMANQLQG-LIPKSLADLGNLQT 291

Query:   370 LLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQH-DLKNVD 428
             L L  ++L   ++ +   + + L  L +    L G+L        PK +   + +L+ + 
Sbjct:   292 LDLSANNL-TGEIPEEFWNMSQLLDLVLANNHLSGSL--------PKSICSNNTNLEQLV 342

Query:   429 LSHLNLSGKFPNWLVEXXXXXXXXXXXXXXXFGSFRMPIHSHQKLATLDVSTNFFRGHIP 488
             LS   LSG+ P  L +                GS    +    +L  L +  N   G + 
Sbjct:   343 LSGTQLSGEIPVELSKCQSLKQLDLSNNSLA-GSIPEALFELVELTDLYLHNNTLEGTLS 401

Query:   489 VEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLE 548
               I   L+ L  L L  N   G +P   + ++ L+ L +  N+ +GEIP  +   C SL+
Sbjct:   402 PSISN-LTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIG-NCTSLK 459

Query:   549 ILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGK 608
             ++ +  N+ +G I      L  L  L L  N+ +G +P SL  C+ L  L L+DN LSG 
Sbjct:   460 MIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGS 519

Query:   609 IPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTL-PSCFSPAYIE 667
             IP   G L  LE +++ NN+L+G +P     L  L  ++LS+N + GT+ P C S +Y+ 
Sbjct:   520 IPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLS 579

Query:   668 EIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGE 727
                ++ N  E  +   +  S  L  L L  N L G IP  + ++ +LS L +++N + G 
Sbjct:   580 -FDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGT 638

Query:   728 IPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTA-LNE---GYHEAVAPISSSSDDASTYV 783
             IP+Q+   K++  IDL++N LSG IPP L   + L E     ++ V  + +   + +  +
Sbjct:   639 IPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLL 698

Query:   784 LPSV---APNGS-P--IGEEETVQFTTKNMSYYYQGRILMSMSGID------LSCNKLTG 831
             + S+   + NGS P  IG    +     + + +  G +  +M  +       LS N LTG
Sbjct:   699 VLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQF-SGSLPQAMGKLSKLYELRLSRNSLTG 757

Query:   832 EIPTQIGYLTRIR-ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNT 890
             EIP +IG L  ++ AL+LS+NN TG IP+T   L ++E+LDLS+N L G++P  +  + +
Sbjct:   758 EIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKS 817

Query:   891 LAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCD 936
             L    V+ NNL GK+     QFS +  DS+ GN  LCG PLS+ C+
Sbjct:   818 LGYLNVSFNNLGGKLKK---QFSRWPADSFLGNTGLCGSPLSR-CN 859

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2096349 RLP31 "receptor like protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 527 (190.6 bits), Expect = 6.1e-55, Sum P(2) = 6.1e-55
 Identities = 199/678 (29%), Positives = 315/678 (46%)

Query:   287 SLSNLEELDMTNNAINNLV--VPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKT 344
             SL NL  L + + + N LV  VP     L +L  L L    ++   ++  SIG+L  L+ 
Sbjct:   127 SLGNLFRLTLLDLSYNYLVGQVPPSIGNLSRLTILDLWDNKLV--GQLPASIGNLTQLE- 183

Query:   345 LYLLFTN--FKGTIVNQELHNFTNLEELLLVK--SDLHVSQLLQSIASFTSLKYLSIRGC 400
              YL+F++  F G I       F+NL +LL+V   ++   S L   ++ F +L Y ++   
Sbjct:   184 -YLIFSHNKFSGNIPV----TFSNLTKLLVVNLYNNSFESMLPLDMSGFQNLDYFNVGEN 238

Query:   401 VLKGALHGQ------------DGGTF--P-KF--LYHQHD-LKNVDLSHLNLSGKFPNWL 442
                G L               +G  F  P +F  +Y     L+ + LS     G  P+ L
Sbjct:   239 SFSGTLPKSLFTIPSLRWANLEGNMFKGPIEFRNMYSPSTRLQYLFLSQNKFDGPIPDTL 298

Query:   443 VEXXXXXXXXXXXXXXXFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSG--LMD 500
              +                GSF   + +   L  +++  N  +G  PVE G   S   L  
Sbjct:   299 SQYLNLIELDLSFNNLT-GSFPTFLFTIPTLERVNLEGNHLKG--PVEFGNMSSSSSLKF 355

Query:   501 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGH 560
             LN ++N FNGSIP S +    L+ L +S+N   G IP R       LE   L +NN+ G 
Sbjct:   356 LNFAQNEFNGSIPESVSQYLNLEELHLSFNNFIGTIP-RSISKLAKLEYFCLEDNNMVGE 414

Query:   561 IFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALE 620
             + S  + LT +       N F GE  + L +  +   L LS N   G  P W+  L +LE
Sbjct:   415 VPSWLWRLTMVALSNNSFNSF-GESSEGLDETQVQW-LDLSSNSFQGPFPHWICKLRSLE 472

Query:   621 DIIMPNNNLEGPIPIEFCQLDYL-KILDL--SNNTIFGTLPSCFSPAY-IEEIHLSKNKI 676
              +IM +N   G IP   C   ++  + DL   NN++ G LP  F  A  +  + +S+NK+
Sbjct:   473 ILIMSDNRFNGSIPP--CLSSFMVSLTDLILRNNSLSGPLPDIFVNATKLLSLDVSRNKL 530

Query:   677 EGRL-ESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEI--PIQIC 733
             +G L +S+IH    +  L++  N +    P+W+  LP L  L+L +N   G +  P    
Sbjct:   531 DGVLPKSLIHCKA-MQLLNVRSNKIKDKFPSWLGSLPSLHVLILRSNEFYGTLYQPHASI 589

Query:   734 QLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAP--NG 791
               + +R+ID+SHN+L G +P    ++     + E ++ ++    D      P +    N 
Sbjct:   590 GFQSLRVIDVSHNDLIGTLPSFYFSS-----WRE-MSRLTGEDGDFRLSEAPYMGKVLNA 643

Query:   792 SPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHN 851
             +    + +++   K +   ++ RI      I+ S N+ +G IP  IG L  +R LNLS N
Sbjct:   644 TAFFVD-SMEIVNKGVETEFK-RINEENKVINFSGNRFSGNIPESIGLLKELRHLNLSSN 701

Query:   852 NLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQ 911
               TG IP + +NL ++E+LDLS N L G+IP  L  L+ ++    + N L G +P +  Q
Sbjct:   702 AFTGNIPQSLANLMKLEALDLSLNQLSGQIPQGLGSLSFMSTMNFSYNFLEGPVP-KSTQ 760

Query:   912 FSTFEEDSYEGNPFLCGL 929
             F      ++  NP L GL
Sbjct:   761 FQGQNCSAFMENPKLNGL 778

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032748001 SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (883 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1021
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-61
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-58
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-53
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-46
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-30
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-06
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	6e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	7e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  227 bits (579), Expect = 1e-61
 Identities = 174/520 (33%), Positives = 238/520 (45%), Gaps = 45/520 (8%)

Query: 424 LKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFF 483
           L+ ++LS+ N +G  P   +    NL+TL L+NN L G     I S   L  LD+  N  
Sbjct: 120 LRYLNLSNNNFTGSIPRGSI---PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176

Query: 484 RGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIG 543
            G IP  +   L+ L  L L+ N   G IP     MK LK + + YN L+GEIP  +  G
Sbjct: 177 VGKIPNSLTN-LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-G 234

Query: 544 CFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDN 603
             SL  L L  NNL G I S   NL NL  L L  NK  G IP S+     L  L LSDN
Sbjct: 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294

Query: 604 HLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSP 663
            LSG+IP  +  L  LE + + +NN  G IP+    L  L++L L +N   G +P     
Sbjct: 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354

Query: 664 AY-IEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANN 722
              +  + LS N + G +   +  S  L  L L  N L G IP  +     L  + L +N
Sbjct: 355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414

Query: 723 YIEGEIPIQICQLKEVRLIDLSHNNLSGHIP------PCLVNTALNEGYHEAVAPISSSS 776
              GE+P +  +L  V  +D+S+NNL G I       P L   +L         P S  S
Sbjct: 415 SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS 474

Query: 777 D-----DASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGI---DLSCNK 828
                 D S        P                          L S+S +    LS NK
Sbjct: 475 KRLENLDLSRNQFSGAVPRK------------------------LGSLSELMQLKLSENK 510

Query: 829 LTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVL 888
           L+GEIP ++    ++ +L+LSHN L+G IP +FS +  +  LDLS N L G+IP  L  +
Sbjct: 511 LSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV 570

Query: 889 NTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCG 928
            +L    +++N+L G +P   A F      +  GN  LCG
Sbjct: 571 ESLVQVNISHNHLHGSLPSTGA-FLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  216 bits (551), Expect = 7e-58
 Identities = 165/508 (32%), Positives = 249/508 (49%), Gaps = 33/508 (6%)

Query: 429 LSHLNLSGKFPNW---LVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRG 485
           LS+ N S     W      N++ + ++ L+  ++ G     I     + T+++S N   G
Sbjct: 48  LSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG 107

Query: 486 HIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCF 545
            IP +I T  S L  LNLS N F GSIP        L++LD+S N L+GEIP+   IG F
Sbjct: 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSI--PNLETLDLSNNMLSGEIPND--IGSF 163

Query: 546 S-LEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNH 604
           S L++L L  N L G I +   NLT+L  L L  N+ +G+IP+ L +   L  +YL  N+
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223

Query: 605 LSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLP-SCFSP 663
           LSG+IP  +G L++L  + +  NNL GPIP     L  L+ L L  N + G +P S FS 
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283

Query: 664 AYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNY 723
             +  + LS N + G +  ++     L  L L  N   G IP  +  LP+L  L L +N 
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 724 IEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDD----- 778
             GEIP  + +   + ++DLS NNL+G IP  L ++    G    +   S+S +      
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS----GNLFKLILFSNSLEGEIPKS 399

Query: 779 -ASTYVLPSVAPNGSPIGEEETVQFTTKNMSYY-------YQGRI------LMSMSGIDL 824
             +   L  V    +    E   +FT   + Y+        QGRI      + S+  + L
Sbjct: 400 LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL 459

Query: 825 SCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQ 884
           + NK  G +P   G   R+  L+LS N  +G +P    +L ++  L LS N L G+IP +
Sbjct: 460 ARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE 518

Query: 885 LIVLNTLAVFRVANNNLSGKIPDRVAQF 912
           L     L    +++N LSG+IP   ++ 
Sbjct: 519 LSSCKKLVSLDLSHNQLSGQIPASFSEM 546

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  202 bits (514), Expect = 2e-53
 Identities = 178/547 (32%), Positives = 263/547 (48%), Gaps = 46/547 (8%)

Query: 212 SNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDL 271
           S +  + L   + +  I S++  L  ++ ++L++N+ +G I       SS LR   +++L
Sbjct: 69  SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLR---YLNL 125

Query: 272 VSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSK 331
            S ++++  I  G  S+ NLE LD++NN                          M+ G +
Sbjct: 126 -SNNNFTGSIPRG--SIPNLETLDLSNN--------------------------MLSG-E 155

Query: 332 VLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTS 391
           +   IGS  SLK L L      G I N  L N T+LE L L  + L V Q+ + +    S
Sbjct: 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQL-VGQIPRELGQMKS 213

Query: 392 LKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKT 451
           LK++ +    L G +  + GG           L ++DL + NL+G  P+ L  N  NL+ 
Sbjct: 214 LKWIYLGYNNLSGEIPYEIGGL--------TSLNHLDLVYNNLTGPIPSSL-GNLKNLQY 264

Query: 452 LLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGS 511
           L L  N L G     I S QKL +LD+S N   G IP E+   L  L  L+L  N F G 
Sbjct: 265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGK 323

Query: 512 IPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNL 571
           IP +   +  L+ L +  N+ +GEIP  +     +L +L LS NNL G I     +  NL
Sbjct: 324 IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNL 382

Query: 572 MRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEG 631
            +L L  N   GEIPKSL  C  L  + L DN  SG++P     L  +  + + NNNL+G
Sbjct: 383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG 442

Query: 632 PIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLM 691
            I      +  L++L L+ N  FG LP  F    +E + LS+N+  G +   +     LM
Sbjct: 443 RINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELM 502

Query: 692 TLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGH 751
            L LS N L G IP  +    +L  L L++N + G+IP    ++  +  +DLS N LSG 
Sbjct: 503 QLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGE 562

Query: 752 IPPCLVN 758
           IP  L N
Sbjct: 563 IPKNLGN 569

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  180 bits (459), Expect = 1e-46
 Identities = 189/634 (29%), Positives = 301/634 (47%), Gaps = 77/634 (12%)

Query: 30  QERSALLQLKHFFNDD-QRLQNWVDAADDENYSDCCQWERVECNKTTGRVIKLDLGDIKN 88
           +E   LL  K   ND  + L NW  +AD       C W+ + CN ++ RV+ +DL     
Sbjct: 29  EELELLLSFKSSINDPLKYLSNWNSSAD------VCLWQGITCNNSS-RVVSIDLSG--- 78

Query: 89  RKNRKSERHLNASLFT-PFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYF 147
            KN   +  +++++F  P+  +++++LS N ++G + ++                     
Sbjct: 79  -KNISGK--ISSAIFRLPY--IQTINLSNNQLSGPIPDD--------------------- 112

Query: 148 NNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLER 207
              IF++    SSLR L+L++N   GSI  +G  S+ NLE LD+S N +    +P     
Sbjct: 113 ---IFTTS---SSLRYLNLSNNNFTGSIP-RG--SIPNLETLDLSNNMLSG-EIPN---D 159

Query: 208 LSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPS 267
           + + S+LK L L  N     I +SL  L+SL  L+LA N+  G I  +  Q  S+  +  
Sbjct: 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI-- 217

Query: 268 FVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLV--VPKDYRCLRKLNTLYLGGIA 325
               +  ++ S  I   +  L++L  LD+     NNL   +P     L+ L  L+L    
Sbjct: 218 ---YLGYNNLSGEIPYEIGGLTSLNHLDLV---YNNLTGPIPSSLGNLKNLQYLFLYQNK 271

Query: 326 MIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQS 385
           +     +  SI SL  L +L L   +  G I  + +    NLE L L  ++    ++  +
Sbjct: 272 LSG--PIPPSIFSLQKLISLDLSDNSLSGEI-PELVIQLQNLEILHLFSNNF-TGKIPVA 327

Query: 386 IASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVEN 445
           + S   L+ L +      G +        PK L   ++L  +DLS  NL+G+ P  L  +
Sbjct: 328 LTSLPRLQVLQLWSNKFSGEI--------PKNLGKHNNLTVLDLSTNNLTGEIPEGLC-S 378

Query: 446 NTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSR 505
           + NL  L+L +NSL G     + + + L  + +  N F G +P E  T L  +  L++S 
Sbjct: 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF-TKLPLVYFLDISN 437

Query: 506 NAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKK 565
           N   G I S   DM  L+ L ++ N+  G +PD  + G   LE L LS N   G +  K 
Sbjct: 438 NNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD--SFGSKRLENLDLSRNQFSGAVPRKL 495

Query: 566 FNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMP 625
            +L+ LM+L+L  NK  GEIP  LS C  L  L LS N LSG+IP     +  L  + + 
Sbjct: 496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555

Query: 626 NNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPS 659
            N L G IP     ++ L  +++S+N + G+LPS
Sbjct: 556 QNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  128 bits (324), Expect = 3e-30
 Identities = 99/322 (30%), Positives = 144/322 (44%), Gaps = 61/322 (18%)

Query: 599 YLSDNHLSGKIPRWLG----NLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIF 654
           YLS+ + S  +  W G    N S +  I +   N+ G I     +L Y++ ++LSNN + 
Sbjct: 47  YLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS 106

Query: 655 GTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQL 714
           G +P                      + I   S  L  L+LS N   GSIP     +P L
Sbjct: 107 GPIP----------------------DDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNL 142

Query: 715 SYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISS 774
             L L+NN + GEIP  I     ++++DL  N L G IP  L N                
Sbjct: 143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL--------------- 187

Query: 775 SSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIP 834
                ++    ++A N          Q   +      Q +   S+  I L  N L+GEIP
Sbjct: 188 -----TSLEFLTLASN----------QLVGQIPRELGQMK---SLKWIYLGYNNLSGEIP 229

Query: 835 TQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVF 894
            +IG LT +  L+L +NNLTG IP++  NLK ++ L L  N L G IPP +  L  L   
Sbjct: 230 YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL 289

Query: 895 RVANNNLSGKIPDRVAQFSTFE 916
            +++N+LSG+IP+ V Q    E
Sbjct: 290 DLSDNSLSGEIPELVIQLQNLE 311

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 83.3 bits (206), Expect = 3e-16
 Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 29/177 (16%)

Query: 819 MSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLL 878
           + G+ L    L G IP  I  L  ++++NLS N++ G IP +  ++  +E LDLSYN   
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 879 GKIPPQLIVLNTLAVFRVANNNLSGKIP----DRVAQFSTFEEDSYEGNPFLCGLPLSKS 934
           G IP  L  L +L +  +  N+LSG++P     R+   ++F   ++  N  LCG+P    
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF---NFTDNAGLCGIP---- 532

Query: 935 CDDNGLTTATPEAYTENKEGDSLIDMDSFLITFTVSYGIVIIGIIGVLCINPYWRRR 991
               GL    P      K G          I F VS   + + I  +      W+RR
Sbjct: 533 ----GLRACGPHLSVGAKIG----------IAFGVSVAFLFLVICAMCW----WKRR 571

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 75.7 bits (186), Expect = 9e-14
 Identities = 41/110 (37%), Positives = 64/110 (58%), Gaps = 3/110 (2%)

Query: 822 IDLSCNKLTGEIPTQIGYLT-RIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGK 880
           I+LS N+L+G IP  I   +  +R LNLS+NN TG+IP     +  +E+LDLS N+L G+
Sbjct: 98  INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS--IPNLETLDLSNNMLSGE 155

Query: 881 IPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP 930
           IP  +   ++L V  +  N L GKIP+ +   ++ E  +   N  +  +P
Sbjct: 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP 205

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.6 bits (147), Expect = 3e-09
 Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 26/114 (22%)

Query: 476 LDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGE 535
           L +     RG IP +I + L  L  +NLS N+  G+IP S   +  L+ LD+SYN   G 
Sbjct: 423 LGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 536 IPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSL 589
           IP+ +                           LT+L  L L+GN   G +P +L
Sbjct: 482 IPESLG-------------------------QLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 6e-09
 Identities = 32/86 (37%), Positives = 49/86 (56%)

Query: 574 LQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPI 633
           L LD     G IP  +SK   L  + LS N + G IP  LG++++LE + +  N+  G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 634 PIEFCQLDYLKILDLSNNTIFGTLPS 659
           P    QL  L+IL+L+ N++ G +P+
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 8e-09
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 7/99 (7%)

Query: 638 CQLD------YLKILDLSNNTIFGTLPSCFSP-AYIEEIHLSKNKIEGRLESIIHYSPYL 690
           CQ D      ++  L L N  + G +P+  S   +++ I+LS N I G +   +     L
Sbjct: 409 CQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSL 468

Query: 691 MTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIP 729
             LDLSYN  +GSIP  + +L  L  L L  N + G +P
Sbjct: 469 EVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 53.4 bits (128), Expect = 3e-07
 Identities = 61/190 (32%), Positives = 89/190 (46%), Gaps = 7/190 (3%)

Query: 495 LSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSN 554
           L+ L  L+L  N      P        LK LD+S N++   +P  +     +L+ L LS 
Sbjct: 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSF 172

Query: 555 NNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLG 614
           N+L   +     NL+NL  L L GNK I ++P  +     L  L LS+N +  ++   L 
Sbjct: 173 NDLS-DLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSII-ELLSSLS 229

Query: 615 NLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKN 674
           NL  L  + + NN LE  +P     L  L+ LDLSNN I  ++ S  S   + E+ LS N
Sbjct: 230 NLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGN 287

Query: 675 KIEGRLESII 684
            +   L  I 
Sbjct: 288 SLSNALPLIA 297

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.7 bits (129), Expect = 4e-07
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 25/114 (21%)

Query: 501 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGH 560
           L L      G IP+  + ++ L+S+++S N + G IP   ++G                 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP--PSLG----------------- 463

Query: 561 IFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLG 614
                 ++T+L  L L  N F G IP+SL +   L  L L+ N LSG++P  LG
Sbjct: 464 ------SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 5e-07
 Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 4/70 (5%)

Query: 183 LSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILS 242
           L +L+ +++S N+I   + P     L ++++L+ L L YNSFN SI  SLG L+SLRIL+
Sbjct: 441 LRHLQSINLSGNSIRGNIPPS----LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496

Query: 243 LADNRFNGSI 252
           L  N  +G +
Sbjct: 497 LNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.5 bits (126), Expect = 8e-07
 Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 23/154 (14%)

Query: 28  LEQERSALLQLKHFFNDDQRLQNWVDAADDENYSDCCQ----WERVEC--NKTTGRVIKL 81
           L +E SAL  LK       R   W       N   C      W   +C  + T G+    
Sbjct: 370 LLEEVSALQTLKSSLGLPLRF-GW-------NGDPCVPQQHPWSGADCQFDSTKGKWFID 421

Query: 82  DLGDIKNRKNRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLL 141
            LG      + +  R    +  +  + L+S++LS N+I G +       L  + +L+ L 
Sbjct: 422 GLG-----LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS----LGSITSLEVLD 472

Query: 142 LDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSI 175
           L  N FN SI  SLG L+SLRIL+L  N L+G +
Sbjct: 473 LSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.7 bits (124), Expect = 2e-06
 Identities = 32/85 (37%), Positives = 43/85 (50%)

Query: 550 LALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKI 609
           L L N  L+G I +    L +L  + L GN   G IP SL     L  L LS N  +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 610 PRWLGNLSALEDIIMPNNNLEGPIP 634
           P  LG L++L  + +  N+L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.7 bits (124), Expect = 2e-06
 Identities = 23/64 (35%), Positives = 34/64 (53%)

Query: 693 LDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHI 752
           L L    L G IP  I +L  L  + L+ N I G IP  +  +  + ++DLS+N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 753 PPCL 756
           P  L
Sbjct: 483 PESL 486

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.2 bits (108), Expect = 3e-06
 Identities = 25/56 (44%), Positives = 31/56 (55%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 877
           +DLS N+LT         L  ++ L+LS NNLT   P  FS L  + SLDLS N L
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 4e-06
 Identities = 28/92 (30%), Positives = 51/92 (55%)

Query: 665 YIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYI 724
           +I+ + L    + G + + I    +L +++LS N + G+IP  +  +  L  L L+ N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 725 EGEIPIQICQLKEVRLIDLSHNNLSGHIPPCL 756
            G IP  + QL  +R+++L+ N+LSG +P  L
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 49.6 bits (118), Expect = 5e-06
 Identities = 55/183 (30%), Positives = 85/183 (46%), Gaps = 5/183 (2%)

Query: 567 NLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPN 626
           NL  L  L L+ N+    I + L    L   L L +N+++  IP  +G L +    +  +
Sbjct: 91  NLLPLPSLDLNLNRLRSNISELLELTNLTS-LDLDNNNIT-DIPPLIGLLKSNLKELDLS 148

Query: 627 NNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHY 686
           +N    +P     L  LK LDLS N +        + + +  + LS NKI   L   I  
Sbjct: 149 DNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL 207

Query: 687 SPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHN 746
              L  LDLS N +   + + +  L  LS L L+NN +E ++P  I  L  +  +DLS+N
Sbjct: 208 LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNN 265

Query: 747 NLS 749
            +S
Sbjct: 266 QIS 268

Length = 394

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 7/47 (14%)

Query: 28 LEQERSALLQLKHFFNDD--QRLQNWVDAADDENYSDCCQWERVECN 72
          L  +R ALL  K   N D    L +W     + + SD C W  V C+
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSW-----NPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 55/268 (20%), Positives = 91/268 (33%), Gaps = 47/268 (17%)

Query: 512 IPSSFADMKMLKSLDISYNQLTGEIPD------RMAIGCFSLEILALSNNNLQGHI---- 561
           + S+      LK L +S N+ TG IP       +       L+ L LS+N L        
Sbjct: 43  LASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101

Query: 562 --FSKKFNLTNLM----RLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGN 615
               +  +L  L      L   G + + +  K L     L  L L  N L G     L  
Sbjct: 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPA--LEKLVLGRNRLEGASCEALAK 159

Query: 616 L----SALEDIIMPNNNLEGPIPIEFCQ----LDYLKILDLSNNTIF--------GTLPS 659
                  L+++ + NN +         +       L++LDL+NN +          TL S
Sbjct: 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLAS 219

Query: 660 CFSPAYIEEIHLSKNKIEGR-----LESIIHYSPYLMTLDLSYNCLH----GSIPTWIDR 710
                 +E ++L  N +          +++  +  L+TL LS N +       +   +  
Sbjct: 220 ---LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAE 276

Query: 711 LPQLSYLLLANNYIEGEIPIQICQLKEV 738
              L  L L  N    E    + +    
Sbjct: 277 KESLLELDLRGNKFGEEGAQLLAESLLE 304

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 47.3 bits (112), Expect = 3e-05
 Identities = 69/222 (31%), Positives = 95/222 (42%), Gaps = 21/222 (9%)

Query: 129 ERLSRLNNLKFLLLDSNYFNNS--IFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNL 186
              S L+ L  L L S    +S     +L  L  L  L L  NRL    +I  L  L+NL
Sbjct: 61  LLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRS--NISELLELTNL 118

Query: 187 EELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADN 246
             LD+  N I ++    GL      SNLK L L  N    S+ S L  L +L+ L L+ N
Sbjct: 119 TSLDLDNNNITDIPPLIGL----LKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFN 173

Query: 247 RFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVV 306
             +    +      S L          +S     I      LS LEELD++NN+I  L  
Sbjct: 174 DLSDLPKLLSN--LSNLNNLDLSGN-KISDLPPEIEL----LSALEELDLSNNSIIEL-- 224

Query: 307 PKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLL 348
                 L+ L+ L L    + D   + +SIG+L +L+TL L 
Sbjct: 225 LSSLSNLKNLSGLELSNNKLED---LPESIGNLSNLETLDLS 263

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 7e-05
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 2/89 (2%)

Query: 427 VDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGH 486
           + L +  L G  PN  +    +L+++ L+ NS+ G+    + S   L  LD+S N F G 
Sbjct: 423 LGLDNQGLRGFIPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 487 IPVEIGTYLSGLMDLNLSRNAFNGSIPSS 515
           IP  +G  L+ L  LNL+ N+ +G +P++
Sbjct: 482 IPESLGQ-LTSLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.0 bits (97), Expect = 7e-05
 Identities = 18/59 (30%), Positives = 26/59 (44%)

Query: 666 IEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYI 724
           ++ + LS N++    +      P L  LDLS N L    P     LP L  L L+ N +
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.8 bits (109), Expect = 7e-05
 Identities = 65/300 (21%), Positives = 99/300 (33%), Gaps = 49/300 (16%)

Query: 100 ASLFTPFQQLESLDLSWNNIAGCVENEGV--ERLSRLNNLKFLLLDSNYF---NNSIFSS 154
           AS   P   L+ L LS N             + L++   L+ L L  N        +  S
Sbjct: 44  ASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103

Query: 155 LGGLSSLRILSLADNRLNGS---IDIKGL-DSLSNLEELDMSYNAIDNLVVPQGLERLST 210
           L   SSL+ L L +N L      +  KGL D    LE+L +  N ++        + L  
Sbjct: 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRA 163

Query: 211 LSNLKFLRLDYNSFNS----SIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVP 266
             +LK L L  N        ++   L    +L +L L +N      D      +  L   
Sbjct: 164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT---DEGASALAETLA-- 218

Query: 267 SFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVV-------PKDYRCLRKLNTL 319
                               SL +LE L++ +N + +                L  L+ L
Sbjct: 219 --------------------SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLS-L 257

Query: 320 YLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFK---GTIVNQELHNFTNLEELLLVKSD 376
               I       + + +    SL  L L    F      ++ + L    N  E L VK D
Sbjct: 258 SCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 5/96 (5%)

Query: 140 LLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNL 199
           L LD+      I + +  L  L+ ++L+ N + G+I    L S+++LE LD+SYN+ +  
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGS 481

Query: 200 VVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGL 235
           + P   E L  L++L+ L L+ NS +  + ++LGG 
Sbjct: 482 I-P---ESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 136 NLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNA 195
           NLK L L +N        +  GL +L++L L+ N L  SI  +    L +L  LD+S N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 196 I 196
           +
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 497 GLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNN 556
            L  L+LS N        +F  +  LK LD+S N LT  I      G  SL  L LS NN
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 557 L 557
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.3 bits (102), Expect = 6e-04
 Identities = 19/41 (46%), Positives = 27/41 (65%)

Query: 818 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIP 858
           S+  +DLS N   G IP  +G LT +R LNL+ N+L+G +P
Sbjct: 467 SLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.002
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 472 KLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQ 531
            L +LD+S N     IP      L  L  L+LS N      P +F+ +  L+SLD+S N 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 532 L 532
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 17/60 (28%), Positives = 24/60 (40%)

Query: 570 NLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNL 629
           NL  L L  N+       +      L  L LS N+L+   P     L +L  + +  NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 22/59 (37%), Positives = 27/59 (45%)

Query: 690 LMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNL 748
           L +LDLS N L          LP L  L L+ N +    P     L  +R +DLS NNL
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1021
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
PLN03150	623	hypothetical protein; Provisional	99.59
PLN03150	623	hypothetical protein; Provisional	99.39
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.23
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.23
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.17
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.12
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.06
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.03
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.99
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.96
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.92
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.92
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.91
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.87
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.86
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.76
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.71
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.69
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.62
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.54
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.45
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.38
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.35
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.28
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.12
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.09
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.06
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.05
KOG4341	483	consensus F-box protein containing LRR [General fu	98.04
KOG4341	483	consensus F-box protein containing LRR [General fu	97.97
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.96
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.87
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.83
PRK15386	426	type III secretion protein GogB; Provisional	97.68
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.64
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.6
PRK15386	426	type III secretion protein GogB; Provisional	97.46
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.46
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.4
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.33
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.29
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.19
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.9
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.87
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.26
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.17
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.15
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.44
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.39
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.29
KOG4308	478	consensus LRR-containing protein [Function unknown	93.06
KOG4308	478	consensus LRR-containing protein [Function unknown	92.43
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.05
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.98
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.58
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.46
smart00370	26	LRR Leucine-rich repeats, outliers.	85.46
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.46
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	84.75
smart00370	26	LRR Leucine-rich repeats, outliers.	84.75
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	84.48
KOG3864	221	consensus Uncharacterized conserved protein [Funct	82.14

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.1e-68  Score=682.13  Aligned_cols=371  Identities=37%  Similarity=0.542  Sum_probs=276.1

Q ss_pred             EEEcCCCCCCcccchhhhhcCCCCCEEECCCCcCCCCCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEECCC
Q 001719          475 TLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSN  554 (1021)
Q Consensus       475 ~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~  554 (1021)
                      +|++++|.+++.+|..+.. +++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+. .+++|+.|++++
T Consensus       240 ~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~l~~  317 (968)
T PLN00113        240 HLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI-QLQNLEILHLFS  317 (968)
T ss_pred             EEECcCceeccccChhHhC-CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc-CCCCCcEEECCC
Confidence            3333333333444544443 66777777777777777777777777777777777777766665443 555566666665


Q ss_pred             CcccccccccccCCCCccEEEccCCcccccCCccccccCccCeEEccCCcCCCcchhhhcCCCCCcEEECCCCcccCCcc
Q 001719          555 NNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIP  634 (1021)
Q Consensus       555 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p  634 (1021)
                      |.+.+..|..+..+++|+.|++++|.+.+.+|..+                        +.+++|+.|++++|++.+.+|
T Consensus       318 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l------------------------~~~~~L~~L~Ls~n~l~~~~p  373 (968)
T PLN00113        318 NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL------------------------GKHNNLTVLDLSTNNLTGEIP  373 (968)
T ss_pred             CccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH------------------------hCCCCCcEEECCCCeeEeeCC
Confidence            55555555555555555555555555554444444                        444445555555555544455


Q ss_pred             ccccCCCCCCEEEccCCccccCCCCCC-CCCcccEEEccCCccccccchhhhcCccccEEEccCCccCCCCCccccCCCC
Q 001719          635 IEFCQLDYLKILDLSNNTIFGTLPSCF-SPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQ  713 (1021)
Q Consensus       635 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~  713 (1021)
                      ..++.+++|+.|++++|++.+.+|..+ .+++|+.|++++|++++..|..+..+++|+.|++++|.+++.+|..+..+++
T Consensus       374 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  453 (968)
T PLN00113        374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS  453 (968)
T ss_pred             hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCC
Confidence            555555555555555555555555443 3455555556666666666667778888888888888888888888888888


Q ss_pred             CcEEEcccccccccCCccccCCCCCCEEeccCCcCcccCCcccccccccccccccccccCCCCCCCcccccCCCCCCCCC
Q 001719          714 LSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSP  793 (1021)
Q Consensus       714 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (1021)
                      |+.|++++|++.+.+|..+ ..++|+.|++++|+++|.+|..+.+++                                 
T Consensus       454 L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~---------------------------------  499 (968)
T PLN00113        454 LQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLS---------------------------------  499 (968)
T ss_pred             CcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhh---------------------------------
Confidence            9999999999888888765 457899999999999988887765543                                 


Q ss_pred             CCCcceEEEeecCccccccccccccccEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCc
Q 001719          794 IGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLS  873 (1021)
Q Consensus       794 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs  873 (1021)
                                              +|+.|+|++|+++|.+|..++.+++|++|+|++|.++|.+|..|+++++|+.|||+
T Consensus       500 ------------------------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  555 (968)
T PLN00113        500 ------------------------ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS  555 (968)
T ss_pred             ------------------------ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECC
Confidence                                    68899999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCCcccccCCCCCEEEccCCcceecCCCcccccCCCCcccccCccCCCCCC
Q 001719          874 YNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP  930 (1021)
Q Consensus       874 ~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lC~~~  930 (1021)
                      +|+++|.+|..+..+++|+.+++++|+++|.+|.. +++.++...++.|||.+||.+
T Consensus       556 ~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        556 QNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             CCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccccCCc
Confidence            99999999999999999999999999999999997 899999999999999999854

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.6e-57  Score=577.59  Aligned_cols=518  Identities=29%  Similarity=0.476  Sum_probs=467.0

Q ss_pred             CCCEEEccCcccccccCchhhhcCCCCceEEecccccccccchhhhccCCcccEEEccCccccccccCCCCCCcchhhcC
Q 001719          341 SLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYH  420 (1021)
Q Consensus       341 ~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~p~~l~~  420 (1021)
                      +++.|+++++.+.+.+ +..+..+++|+.|++++|.+.+..|...+..+++|++|++++|.+.        +.+|.  ..
T Consensus        70 ~v~~L~L~~~~i~~~~-~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~--------~~~p~--~~  138 (968)
T PLN00113         70 RVVSIDLSGKNISGKI-SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT--------GSIPR--GS  138 (968)
T ss_pred             cEEEEEecCCCccccC-ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccc--------cccCc--cc
Confidence            3556666666666665 5667777777777777777766666555557777777777777654        23333  34


Q ss_pred             CCCcCEEEecCCccccCCChhHhhcCCCCCEEECcCCcCCCCCccCccCCCCcCEEEcCCCCCCcccchhhhhcCCCCCE
Q 001719          421 QHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMD  500 (1021)
Q Consensus       421 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~  500 (1021)
                      +++|++|++++|.+++.+|.. ++++++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+.. +++|++
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~  216 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKW  216 (968)
T ss_pred             cCCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccE
Confidence            678999999999998888877 478999999999999999888999999999999999999999889988876 899999


Q ss_pred             EECCCCcCCCCCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEECCCCcccccccccccCCCCccEEEccCCc
Q 001719          501 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNK  580 (1021)
Q Consensus       501 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  580 (1021)
                      |++++|.+.+.+|..++.+++|++|++++|.+++.+|..+. ++++|++|++++|.+.+.+|..+.++++|++|++++|.
T Consensus       217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  295 (968)
T PLN00113        217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS  295 (968)
T ss_pred             EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh-CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence            99999999999999999999999999999999988888764 89999999999999999999999999999999999999


Q ss_pred             ccccCCccccccCccCeEEccCCcCCCcchhhhcCCCCCcEEECCCCcccCCccccccCCCCCCEEEccCCccccCCCCC
Q 001719          581 FIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSC  660 (1021)
Q Consensus       581 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  660 (1021)
                      +.+.+|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|++.+.+|..
T Consensus       296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~  375 (968)
T PLN00113        296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG  375 (968)
T ss_pred             eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             C-CCCcccEEEccCCccccccchhhhcCccccEEEccCCccCCCCCccccCCCCCcEEEcccccccccCCccccCCCCCC
Q 001719          661 F-SPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVR  739 (1021)
Q Consensus       661 ~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  739 (1021)
                      + ...+|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+..+++|+
T Consensus       376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  455 (968)
T PLN00113        376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ  455 (968)
T ss_pred             HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence            7 678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccCCcCcccCCcccccccccccccccccccCCCCCCCcccccCCCCCCCCCCCCcceEEEeecCccccccccccccc
Q 001719          740 LIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSM  819 (1021)
Q Consensus       740 ~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  819 (1021)
                      .|++++|++.|.+|..+.                                                          ..+|
T Consensus       456 ~L~L~~n~~~~~~p~~~~----------------------------------------------------------~~~L  477 (968)
T PLN00113        456 MLSLARNKFFGGLPDSFG----------------------------------------------------------SKRL  477 (968)
T ss_pred             EEECcCceeeeecCcccc----------------------------------------------------------cccc
Confidence            999999999988886432                                                          1268


Q ss_pred             cEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCCCCCCcccccCCCCCEEEccCC
Q 001719          820 SGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANN  899 (1021)
Q Consensus       820 ~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N  899 (1021)
                      +.||+++|++++.+|..+..+++|+.|+|++|++++.+|+.++++++|++|+|++|+++|.+|..+..+++|+.|++++|
T Consensus       478 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  557 (968)
T PLN00113        478 ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQN  557 (968)
T ss_pred             eEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceecCCCcccccCCCCcccccCccCCCCCC
Q 001719          900 NLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP  930 (1021)
Q Consensus       900 ~l~g~ip~~~~~~~~~~~~~~~gN~~lC~~~  930 (1021)
                      +++|.+|..+..+..+..+++++|+..+..|
T Consensus       558 ~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        558 QLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             cccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            9999999998889999999999999887554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-37  Score=331.24  Aligned_cols=374  Identities=21%  Similarity=0.221  Sum_probs=265.4

Q ss_pred             CCEEECCCCcCCCCCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEECCCCcccccccccccCCCCccEEEcc
Q 001719          498 LMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLD  577 (1021)
Q Consensus       498 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  577 (1021)
                      -+.|++++|++....+..|.++++|+++++..|.++ .||.... ...+|+.|+|.+|.|+..-.+.+..++.|+.|||+
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~-~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH-ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccc-cccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            345666666666666666666666666666666666 5665432 33446666666666666555666666666666666


Q ss_pred             CCcccccCCccccccCccCeEEccCCcCCCcchhhhcCCCCCcEEECCCCcccCCccccccCCCCCCEEEccCCccccCC
Q 001719          578 GNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTL  657 (1021)
Q Consensus       578 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  657 (1021)
                      .|.++......|..-.++++|+|++|+++..-...|.++.+|.+|.|+.|+++...+..|.++++|+.|+|..|.|.-.-
T Consensus       158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive  237 (873)
T KOG4194|consen  158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE  237 (873)
T ss_pred             hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence            66666444445555556666666666666666666666666777777777776555556666777777777777665332


Q ss_pred             CCCC-CCCcccEEEccCCccccccchhhhcCccccEEEccCCccCCCCCccccCCCCCcEEEcccccccccCCccccCCC
Q 001719          658 PSCF-SPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLK  736 (1021)
Q Consensus       658 p~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  736 (1021)
                      -..| ++++|+.|.+..|++.......|..+.+++.|+|+.|+++..-..|+-++++|+.|+|++|.|..+-+..+..++
T Consensus       238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq  317 (873)
T KOG4194|consen  238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ  317 (873)
T ss_pred             hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence            3334 566777777777777766667777778888888888888777777777888888888888888877777777888


Q ss_pred             CCCEEeccCCcCcccCCcccccccccccccccccccCCCCCCCcccccCCCCCCCCCCCCcceEEEeecCcccccccccc
Q 001719          737 EVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRIL  816 (1021)
Q Consensus       737 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  816 (1021)
                      +|+.|+|++|+++.--|..+..                                                         +
T Consensus       318 kL~~LdLs~N~i~~l~~~sf~~---------------------------------------------------------L  340 (873)
T KOG4194|consen  318 KLKELDLSSNRITRLDEGSFRV---------------------------------------------------------L  340 (873)
T ss_pred             cceeEeccccccccCChhHHHH---------------------------------------------------------H
Confidence            8888888888887333333322                                                         3


Q ss_pred             ccccEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhh---cccCCCCCCEEeCcCccCCCCCCcccccCCCCCE
Q 001719          817 MSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPT---TFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAV  893 (1021)
Q Consensus       817 ~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~  893 (1021)
                      ..|+.|.|++|+++..--..|..+++|+.|||++|.|++.|.+   .|..|++|+.|+|-+|+|......+|..+..|+.
T Consensus       341 ~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~  420 (873)
T KOG4194|consen  341 SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEH  420 (873)
T ss_pred             HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccce
Confidence            3677788888888855556777888899999999988887764   3778889999999999998666678888999999


Q ss_pred             EEccCCcceecCCCcccccCCCCcccccCccCCCCCCC
Q 001719          894 FRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL  931 (1021)
Q Consensus       894 L~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lC~~~l  931 (1021)
                      |||.+|.+-..-|..|.++ .++++-+..-.++|+|.+
T Consensus       421 LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql  457 (873)
T KOG4194|consen  421 LDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQL  457 (873)
T ss_pred             ecCCCCcceeecccccccc-hhhhhhhcccceEEeccH
Confidence            9999999888888888777 777777777788999975

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=5.6e-39  Score=327.44  Aligned_cols=457  Identities=27%  Similarity=0.357  Sum_probs=313.8

Q ss_pred             hcCCCCcCEEEecCCccccCCChhHhhcCCCCCEEECcCCcCCCCCccCccCCCCcCEEEcCCCCCCcccchhhhhcCCC
Q 001719          418 LYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSG  497 (1021)
Q Consensus       418 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~  497 (1021)
                      +..+..++.+++++|+++ +.|+. .+.+..++.++.++|++.. +|..+....+++.+++++|.+. ++|++++. +..
T Consensus        64 l~nL~~l~vl~~~~n~l~-~lp~a-ig~l~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~-~~~  138 (565)
T KOG0472|consen   64 LKNLACLTVLNVHDNKLS-QLPAA-IGELEALKSLNVSHNKLSE-LPEQIGSLISLVKLDCSSNELK-ELPDSIGR-LLD  138 (565)
T ss_pred             hhcccceeEEEeccchhh-hCCHH-HHHHHHHHHhhcccchHhh-ccHHHhhhhhhhhhhcccccee-ecCchHHH-Hhh
Confidence            334445556666666665 44544 2456666666666666543 4555666777777888888777 77777777 778


Q ss_pred             CCEEECCCCcCCCCCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEECCCCcccccccccccCCCCccEEEcc
Q 001719          498 LMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLD  577 (1021)
Q Consensus       498 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  577 (1021)
                      ++.++..+|+++ ..|+.+..+.+|..+++.+|+++ +.|+... +++.|++||...|.++ .+|+.++.+.+|..|++.
T Consensus       139 l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~  214 (565)
T KOG0472|consen  139 LEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLR  214 (565)
T ss_pred             hhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhh
Confidence            888888888887 67778888888888888888888 5665554 3788888888888776 577888888888888888


Q ss_pred             CCcccccCCccccccCccCeEEccCCcCCCcchhhhc-CCCCCcEEECCCCcccCCccccccCCCCCCEEEccCCccccC
Q 001719          578 GNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLG-NLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGT  656 (1021)
Q Consensus       578 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  656 (1021)
                      .|++. .+| .|.+|+.|.+++++.|.+. .+|+... +++++..||+++|++. ..|..++.+++|++||+|+|.+++.
T Consensus       215 ~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~L  290 (565)
T KOG0472|consen  215 RNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSL  290 (565)
T ss_pred             hcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccC
Confidence            88887 666 6888888999998888887 5565544 8888889999999887 6888888888899999999988866


Q ss_pred             CCCCCCCCcccEEEccCCccccccchhhhcC-----ccccE----EEccCCc---c-CCCCCcc----ccCCCCCcEEEc
Q 001719          657 LPSCFSPAYIEEIHLSKNKIEGRLESIIHYS-----PYLMT----LDLSYNC---L-HGSIPTW----IDRLPQLSYLLL  719 (1021)
Q Consensus       657 ~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~-----~~L~~----L~Ls~N~---l-~~~~p~~----~~~l~~L~~L~L  719 (1021)
                      .+...+. .|+.|-+.+|.+..+-.+.+..-     +.|+.    =-++...   - .+..|.+    .....+.+.|++
T Consensus       291 p~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~  369 (565)
T KOG0472|consen  291 PYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDV  369 (565)
T ss_pred             Ccccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcc
Confidence            5554445 88888888888753221111110     01110    0011110   0 0011111    112345667777


Q ss_pred             ccccccccCCccccCCCC---CCEEeccCCcCcccCCcccccccccccccccccccCCCCCCCcccccCCCCCCCCCCCC
Q 001719          720 ANNYIEGEIPIQICQLKE---VRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGE  796 (1021)
Q Consensus       720 ~~N~l~~~~p~~~~~l~~---L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  796 (1021)
                      ++-+++ .+|.+...-..   ...++++.|++. .+|..+..++-...                ..++......+.+   
T Consensus       370 s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT----------------~l~lsnn~isfv~---  428 (565)
T KOG0472|consen  370 SDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVT----------------DLVLSNNKISFVP---  428 (565)
T ss_pred             cccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHH----------------HHHhhcCccccch---
Confidence            777776 55555443333   566777777775 66665544330000                0000000000000   


Q ss_pred             cceEEEeecCccccccccccccccEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCcc
Q 001719          797 EETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL  876 (1021)
Q Consensus       797 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~  876 (1021)
                                    .....+++++.|+|++|-+. .+|.+++.+..|+.||+|+|+|. .+|..+..+..++.+-.++|+
T Consensus       429 --------------~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nq  492 (565)
T KOG0472|consen  429 --------------LELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQ  492 (565)
T ss_pred             --------------HHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccc
Confidence                          00123557888999999888 89999999999999999999988 788888888888888888888


Q ss_pred             CCCCCCcccccCCCCCEEEccCCcceecCCCcccccCCCCcccccCccCC
Q 001719          877 LLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFL  926 (1021)
Q Consensus       877 l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~l  926 (1021)
                      +....|+.+.++.+|.+||+.+|.+. .||..++.++++..+.+.|||+-
T Consensus       493 i~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  493 IGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            88666666999999999999999988 67777899999999999999864

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-36  Score=323.71  Aligned_cols=370  Identities=22%  Similarity=0.229  Sum_probs=311.8

Q ss_pred             CCEEECcCCcCCCCCccCccCCCCcCEEEcCCCCCCcccchhhhhcCCCCCEEECCCCcCCCCCCccccCCCCCCEEEcC
Q 001719          449 LKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDIS  528 (1021)
Q Consensus       449 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls  528 (1021)
                      -+.|++++|.+..+....|..+++|+++++..|.++ .||..... ..+|+.|+|.+|.|+..-...+..++.|+.||||
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            456888888888777777888888888888888887 78876554 6779999999999998888889999999999999


Q ss_pred             CCcCCCccchhhhhcCCCCcEEECCCCcccccccccccCCCCccEEEccCCcccccCCccccccCccCeEEccCCcCCCc
Q 001719          529 YNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGK  608 (1021)
Q Consensus       529 ~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  608 (1021)
                      .|.++ ++|...|..-.++++|+|++|.|+..-...|.++.+|..|.|+.|+++...+..|.++++|+.|+|..|++.-.
T Consensus       158 rN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  158 RNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             hchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence            99998 88887776667899999999999988888899999999999999999977778888899999999999998754


Q ss_pred             chhhhcCCCCCcEEECCCCcccCCccccccCCCCCCEEEccCCccccCCCCCC-CCCcccEEEccCCccccccchhhhcC
Q 001719          609 IPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCF-SPAYIEEIHLSKNKIEGRLESIIHYS  687 (1021)
Q Consensus       609 ~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~  687 (1021)
                      ---.|.++++|+.|.+..|.+...-.+.|..+.++++|+|+.|++...-..+. ++++|+.|++++|.|..+-++.+..+
T Consensus       237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft  316 (873)
T KOG4194|consen  237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT  316 (873)
T ss_pred             hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence            45678999999999999999998888889999999999999999986655544 88999999999999999989999999


Q ss_pred             ccccEEEccCCccCCCCCccccCCCCCcEEEcccccccccCCccccCCCCCCEEeccCCcCcccCCcccccccccccccc
Q 001719          688 PYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHE  767 (1021)
Q Consensus       688 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~  767 (1021)
                      ++|++|||++|+|+...+..|..+..|++|.|++|+++..-...|..+++|+.|||++|.+++.|-+.-.          
T Consensus       317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~----------  386 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAV----------  386 (873)
T ss_pred             ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchh----------
Confidence            9999999999999988888999999999999999999877778888999999999999999865533110          


Q ss_pred             cccccCCCCCCCcccccCCCCCCCCCCCCcceEEEeecCccccccccccccccEEEcccceecCcCcccccCCCCCCEEE
Q 001719          768 AVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALN  847 (1021)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~  847 (1021)
                                                                .|  ..+++|+.|+|.+|++...--.+|..+.+|+.||
T Consensus       387 ------------------------------------------~f--~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~Ld  422 (873)
T KOG4194|consen  387 ------------------------------------------AF--NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLD  422 (873)
T ss_pred             ------------------------------------------hh--ccchhhhheeecCceeeecchhhhccCcccceec
Confidence                                                      01  2256788888888888844345788888888888


Q ss_pred             cCCCcCccchhhcccCCCCCCEEeCcCcc
Q 001719          848 LSHNNLTGTIPTTFSNLKQIESLDLSYNL  876 (1021)
Q Consensus       848 Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~  876 (1021)
                      |.+|.|..+-|++|..+ .|+.|.++.-.
T Consensus       423 L~~NaiaSIq~nAFe~m-~Lk~Lv~nSss  450 (873)
T KOG4194|consen  423 LGDNAIASIQPNAFEPM-ELKELVMNSSS  450 (873)
T ss_pred             CCCCcceeecccccccc-hhhhhhhcccc
Confidence            88888888888888888 88887776543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=6.6e-39  Score=326.93  Aligned_cols=495  Identities=24%  Similarity=0.349  Sum_probs=387.4

Q ss_pred             CCCCEEEccCcccccccCchhhhcCCCCceEEecccccccccchhhhccCCcccEEEccCccccccccCCCCCCcchhhc
Q 001719          340 PSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLY  419 (1021)
Q Consensus       340 ~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~p~~l~  419 (1021)
                      ..|+.+.++.|.+...  ...+.++..+..+++.+|.+....+  +++.+..++.++.+.+.+         ..+|+.++
T Consensus        45 v~l~~lils~N~l~~l--~~dl~nL~~l~vl~~~~n~l~~lp~--aig~l~~l~~l~vs~n~l---------s~lp~~i~  111 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVL--REDLKNLACLTVLNVHDNKLSQLPA--AIGELEALKSLNVSHNKL---------SELPEQIG  111 (565)
T ss_pred             cchhhhhhccCchhhc--cHhhhcccceeEEEeccchhhhCCH--HHHHHHHHHHhhcccchH---------hhccHHHh
Confidence            4678889998887643  4678899999999999999875443  688888999999998876         47888889


Q ss_pred             CCCCcCEEEecCCccccCCChhHhhcCCCCCEEECcCCcCCCCCccCccCCCCcCEEEcCCCCCCcccchhhhhcCCCCC
Q 001719          420 HQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLM  499 (1021)
Q Consensus       420 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~  499 (1021)
                      ...++..+++++|.+. ++|+.+ +.+-.|+.++..+|++.. .|..+..+.++..+++.+|+++ ..|+.... ++.|+
T Consensus       112 s~~~l~~l~~s~n~~~-el~~~i-~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~  186 (565)
T KOG0472|consen  112 SLISLVKLDCSSNELK-ELPDSI-GRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLK  186 (565)
T ss_pred             hhhhhhhhhcccccee-ecCchH-HHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHH
Confidence            9999999999999988 566663 578889999999998864 5667778889999999999998 66666655 78999


Q ss_pred             EEECCCCcCCCCCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEECCCCcccccccccccCCCCccEEEccCC
Q 001719          500 DLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGN  579 (1021)
Q Consensus       500 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  579 (1021)
                      ++|...|.+. .+|+.++.+.+|..|++..|++. .+|+  |.+|..|++++++.|++.-...+...+++++..||+.+|
T Consensus       187 ~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN  262 (565)
T KOG0472|consen  187 HLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN  262 (565)
T ss_pred             hcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc
Confidence            9999999887 78888999999999999999998 8883  348889999999999988554455568899999999999


Q ss_pred             cccccCCccccccCccCeEEccCCcCCCcchhhhcCCCCCcEEECCCCcccCCccccccCCC---CCCEE-------Ecc
Q 001719          580 KFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLD---YLKIL-------DLS  649 (1021)
Q Consensus       580 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~---~L~~L-------~Ls  649 (1021)
                      +++ +.|+.+..+.+|++||+++|.++ ..|..++++ .|+.|.+.+|.+.. +...+-+..   -|++|       -++
T Consensus       263 klk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS  338 (565)
T KOG0472|consen  263 KLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLS  338 (565)
T ss_pred             ccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCC
Confidence            988 88888888999999999999998 577788998 89999999998752 222211111   01111       011


Q ss_pred             CCc---------cccCCCCCCCCCcccEEEccCCccccccchhhhcCc--cccEEEccCCccCCCCCccccCCCCCcE-E
Q 001719          650 NNT---------IFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSP--YLMTLDLSYNCLHGSIPTWIDRLPQLSY-L  717 (1021)
Q Consensus       650 ~n~---------l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~--~L~~L~Ls~N~l~~~~p~~~~~l~~L~~-L  717 (1021)
                      .-.         ..+..|+.....+.+.|++++-+++..+.+.|..-.  -.+.++++.|++. .+|..+..+..+.+ +
T Consensus       339 ~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l  417 (565)
T KOG0472|consen  339 QSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDL  417 (565)
T ss_pred             CCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHH
Confidence            110         111222222345788899999999877666665433  3788999999998 78888777776655 4


Q ss_pred             EcccccccccCCccccCCCCCCEEeccCCcCcccCCcccccccccccccccccccCCCCCCCcccccCCCCCCCCCCCCc
Q 001719          718 LLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEE  797 (1021)
Q Consensus       718 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  797 (1021)
                      .+++|.+ +-+|..++.+++|..|+|++|.+. .+|..++.+.                                     
T Consensus       418 ~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv-------------------------------------  458 (565)
T KOG0472|consen  418 VLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLV-------------------------------------  458 (565)
T ss_pred             HhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhh-------------------------------------
Confidence            4555555 488999999999999999999886 7887666543                                     


Q ss_pred             ceEEEeecCccccccccccccccEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccC
Q 001719          798 ETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL  877 (1021)
Q Consensus       798 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l  877 (1021)
                                          .|+.||+|.|+|. .+|..+..+..++.+-.++|++....|+.+.+|.+|..|||.+|.|
T Consensus       459 --------------------~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl  517 (565)
T KOG0472|consen  459 --------------------RLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL  517 (565)
T ss_pred             --------------------hhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCch
Confidence                                6889999999999 8999998888899888888999988888899999999999999999


Q ss_pred             CCCCCcccccCCCCCEEEccCCcceecCCCc-ccccCCCCcccccCcc
Q 001719          878 LGKIPPQLIVLNTLAVFRVANNNLSGKIPDR-VAQFSTFEEDSYEGNP  924 (1021)
Q Consensus       878 ~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~gN~  924 (1021)
                      . .||+.++++++|+.|++++|++.  .|.. +-.-.|..-++|.+++
T Consensus       518 q-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~~iLmkgT~aiL~ylrdr  562 (565)
T KOG0472|consen  518 Q-QIPPILGNMTNLRHLELDGNPFR--QPRHQILMKGTAAILSYLRDR  562 (565)
T ss_pred             h-hCChhhccccceeEEEecCCccC--CCHHHHhccChHHHHHHhccc
Confidence            8 89999999999999999999998  3432 1222344445555554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=5.1e-34  Score=320.56  Aligned_cols=487  Identities=28%  Similarity=0.345  Sum_probs=290.6

Q ss_pred             CCCCEEeCCCCCCCCcccccCCCCCCCCEEEcCCcccccccChhccCCCCCCCEEeCCCCCCCCCCCcccccccCCCCCC
Q 001719          135 NNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNL  214 (1021)
Q Consensus       135 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L  214 (1021)
                      .+++.|+++.|.+.....+.+.+..+|+.||+++|.++ ..|. .+..+.+|+.|+++.|.|...+.     .+.++.+|
T Consensus        21 ~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~-~it~l~~L~~ln~s~n~i~~vp~-----s~~~~~~l   93 (1081)
T KOG0618|consen   21 EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPI-QITLLSHLRQLNLSRNYIRSVPS-----SCSNMRNL   93 (1081)
T ss_pred             HHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCc-hhhhHHHHhhcccchhhHhhCch-----hhhhhhcc
Confidence            33666666666554333344555555777777777665 6665 66777777777777776665542     56667777


Q ss_pred             CEEECCCCCCCCccchhccCCCCCCEEEcCCccCcccccccCccccccccCCcccceeecCCCcCCCCCCCCCCCCCCee
Q 001719          215 KFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEEL  294 (1021)
Q Consensus       215 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~l~~l~~L~~L  294 (1021)
                      +++.|.+|.+. ..|..+..+++|++|+++.|.+. .+|.                             .+..+..++.+
T Consensus        94 ~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl-----------------------------~i~~lt~~~~~  142 (1081)
T KOG0618|consen   94 QYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPL-----------------------------VIEVLTAEEEL  142 (1081)
T ss_pred             hhheeccchhh-cCchhHHhhhcccccccchhccC-CCch-----------------------------hHHhhhHHHHH
Confidence            77777766654 34666777777777777777653 3333                             13333333444


Q ss_pred             eCCCCCCCCCcCChhhhhhccccccccCCcccccCcccccccCCCCCCCEEEccCcccccccCchhhhcCCCCceEEecc
Q 001719          295 DMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVK  374 (1021)
Q Consensus       295 ~Ls~n~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~  374 (1021)
                      ..++|.-.. .++...     .+.+++..+....  .+..++..+..  .|++.+|.+.    ...+.++.+|+.+....
T Consensus       143 ~~s~N~~~~-~lg~~~-----ik~~~l~~n~l~~--~~~~~i~~l~~--~ldLr~N~~~----~~dls~~~~l~~l~c~r  208 (1081)
T KOG0618|consen  143 AASNNEKIQ-RLGQTS-----IKKLDLRLNVLGG--SFLIDIYNLTH--QLDLRYNEME----VLDLSNLANLEVLHCER  208 (1081)
T ss_pred             hhhcchhhh-hhcccc-----chhhhhhhhhccc--chhcchhhhhe--eeecccchhh----hhhhhhccchhhhhhhh
Confidence            444441000 111111     2222222211110  11134444444  5888888776    24567778888888877


Q ss_pred             cccccccchhhhccCCcccEEEccCccccccccCCCCCCcchhhcCCCCcCEEEecCCccccCCChhHhhcCCCCCEEEC
Q 001719          375 SDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLL  454 (1021)
Q Consensus       375 n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L  454 (1021)
                      |.+....     ..-++|+.|+.+.|.+.....        .  ..-.+|+++++++|+++ .+|.| .+.+.+|+.+..
T Consensus       209 n~ls~l~-----~~g~~l~~L~a~~n~l~~~~~--------~--p~p~nl~~~dis~n~l~-~lp~w-i~~~~nle~l~~  271 (1081)
T KOG0618|consen  209 NQLSELE-----ISGPSLTALYADHNPLTTLDV--------H--PVPLNLQYLDISHNNLS-NLPEW-IGACANLEALNA  271 (1081)
T ss_pred             cccceEE-----ecCcchheeeeccCcceeecc--------c--cccccceeeecchhhhh-cchHH-HHhcccceEecc
Confidence            7765322     234677778777776651111        0  11246777888888777 56665 467777777777


Q ss_pred             cCCcCCCCCccCccCCCCcCEEEcCCCCCCcccchhhhhcCCCCCEEECCCCcCCCCCCc-cccCCCC-CCEEEcCCCcC
Q 001719          455 ANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPS-SFADMKM-LKSLDISYNQL  532 (1021)
Q Consensus       455 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~-L~~L~Ls~n~l  532 (1021)
                      .+|.+ ...|..+...++|+.|++..|.+. .+|..... ++.|++|+|..|++. ..|+ .+.-... |..|+.+.|++
T Consensus       272 n~N~l-~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~-~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l  347 (1081)
T KOG0618|consen  272 NHNRL-VALPLRISRITSLVSLSAAYNELE-YIPPFLEG-LKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKL  347 (1081)
T ss_pred             cchhH-HhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccc-cceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccc
Confidence            77777 344555566667777777777666 56655543 566777777777766 3333 2222322 55666666666


Q ss_pred             CCccchhhhhcCCCCcEEECCCCcccccccccccCCCCccEEEccCCcccccCCccccccCccCeEEccCCcCCCcchhh
Q 001719          533 TGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRW  612 (1021)
Q Consensus       533 ~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~  612 (1021)
                      . ..|..-....+.|+.|.+.+|.++....+.+.+...|+.|+|++|++.......+.++..|+.|+|++|+++ .+|..
T Consensus       348 ~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~t  425 (1081)
T KOG0618|consen  348 S-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDT  425 (1081)
T ss_pred             c-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHH
Confidence            5 444333334556777777777777666666777777777777777776444445666777777777777777 56677


Q ss_pred             hcCCCCCcEEECCCCcccCCccccccCCCCCCEEEccCCccccC-CCCCCCCCcccEEEccCCccccccchhhhcCcccc
Q 001719          613 LGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGT-LPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLM  691 (1021)
Q Consensus       613 l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~  691 (1021)
                      +.++..|++|...+|++. ..| .+..+++|+.+|+|.|+++.. +|.....++|++||+++|.-.......|..+..+.
T Consensus       426 va~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~  503 (1081)
T KOG0618|consen  426 VANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLS  503 (1081)
T ss_pred             HHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhh
Confidence            777777777777777776 455 677777777777777777643 23322226777777777764333344555555555


Q ss_pred             EEEccCC
Q 001719          692 TLDLSYN  698 (1021)
Q Consensus       692 ~L~Ls~N  698 (1021)
                      ..++.-|
T Consensus       504 ~~~i~~~  510 (1081)
T KOG0618|consen  504 QMDITLN  510 (1081)
T ss_pred             heecccC
Confidence            5555554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=2e-33  Score=315.89  Aligned_cols=423  Identities=22%  Similarity=0.286  Sum_probs=248.3

Q ss_pred             eeCCCCCCCCCcCChhhhhhccccccccCCcccccCcccccccCCCCCCCEEEccCcccccccCchhhhcCCCCceEEec
Q 001719          294 LDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLV  373 (1021)
Q Consensus       294 L~Ls~n~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~  373 (1021)
                      +|++.+++.  .+|..+..-..++.|.+..|......  +..+...-+|+.|++++|.+. .+ |..+..+..|+.|.++
T Consensus         3 vd~s~~~l~--~ip~~i~~~~~~~~ln~~~N~~l~~p--l~~~~~~v~L~~l~lsnn~~~-~f-p~~it~l~~L~~ln~s   76 (1081)
T KOG0618|consen    3 VDASDEQLE--LIPEQILNNEALQILNLRRNSLLSRP--LEFVEKRVKLKSLDLSNNQIS-SF-PIQITLLSHLRQLNLS   76 (1081)
T ss_pred             cccccccCc--ccchhhccHHHHHhhhccccccccCc--hHHhhheeeeEEeeccccccc-cC-CchhhhHHHHhhcccc
Confidence            445555554  34555444444666666666554432  244445556999999888765 34 7778888889999999


Q ss_pred             ccccccccchhhhccCCcccEEEccCccccccccCCCCCCcchhhcCCCCcCEEEecCCccccCCChhHhhcCCCCCEEE
Q 001719          374 KSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLL  453 (1021)
Q Consensus       374 ~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~  453 (1021)
                      .|.+....  .+...+.+|+++.+.++.+         ..+|..+..+++|+.||++.|.+. .+|..+ ..++.++.+.
T Consensus        77 ~n~i~~vp--~s~~~~~~l~~lnL~~n~l---------~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i-~~lt~~~~~~  143 (1081)
T KOG0618|consen   77 RNYIRSVP--SSCSNMRNLQYLNLKNNRL---------QSLPASISELKNLQYLDLSFNHFG-PIPLVI-EVLTAEEELA  143 (1081)
T ss_pred             hhhHhhCc--hhhhhhhcchhheeccchh---------hcCchhHHhhhcccccccchhccC-CCchhH-HhhhHHHHHh
Confidence            88877543  4677788888888888866         367878888888888888888887 677654 5677777777


Q ss_pred             CcCCcCCCCCccCccCCCCcCEEEcCCCCCCcccchhhhhcCCCCCEEECCCCcCCCCCCccccCCCCCCEEEcCCCcCC
Q 001719          454 LANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLT  533 (1021)
Q Consensus       454 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~  533 (1021)
                      .++|......+.    . .++.+++..|.+.+.++..+.. +..  .|+|.+|.+.   -..+..+++|+.+....|++.
T Consensus       144 ~s~N~~~~~lg~----~-~ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls  212 (1081)
T KOG0618|consen  144 ASNNEKIQRLGQ----T-SIKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS  212 (1081)
T ss_pred             hhcchhhhhhcc----c-cchhhhhhhhhcccchhcchhh-hhe--eeecccchhh---hhhhhhccchhhhhhhhcccc
Confidence            777722211111    1 1566667777666666665543 333  4777777665   234566666777777777665


Q ss_pred             CccchhhhhcCCCCcEEECCCCcccccccccccCCCCccEEEccCCcccccCCccccccCccCeEEccCCcCCCcchhhh
Q 001719          534 GEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWL  613 (1021)
Q Consensus       534 ~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l  613 (1021)
                       .+..    .-++|+.|+.++|.++...+.  ....+|++++++.|+++ .+|.++..|.+|+.++..+|+++ .+|..+
T Consensus       213 -~l~~----~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri  283 (1081)
T KOG0618|consen  213 -ELEI----SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRI  283 (1081)
T ss_pred             -eEEe----cCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHH
Confidence             3222    235666666666666622221  12345666666666665 44566666666666666666664 555555


Q ss_pred             cCCCCCcEEECCCCcccCCccccccCCCCCCEEEccCCccccCCCCCC--CCCcccEEEccCCccccccchhhhcCcccc
Q 001719          614 GNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCF--SPAYIEEIHLSKNKIEGRLESIIHYSPYLM  691 (1021)
Q Consensus       614 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~  691 (1021)
                      ...++|+.|.+..|.+. -+|.....+++|++|+|..|++....+..+  ...+|..|+.+.|++.......=...+.|+
T Consensus       284 ~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq  362 (1081)
T KOG0618|consen  284 SRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQ  362 (1081)
T ss_pred             hhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHH
Confidence            66666666666666665 445555556666666666666543222222  122345555555555433222222334455


Q ss_pred             EEEccCCccCCCCCccccCCCCCcEEEcccccccccCCccccCCCCCCEEeccCCcCcccCCcccc
Q 001719          692 TLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLV  757 (1021)
Q Consensus       692 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~  757 (1021)
                      .|.+.+|.++...-..+.+...|++|+|++|++.......+.++..|+.|+||+|+++ .+|.++.
T Consensus       363 ~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva  427 (1081)
T KOG0618|consen  363 ELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVA  427 (1081)
T ss_pred             HHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHH
Confidence            5555555555544444555555555555555555333344455555555555555554 4444433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=4.9e-33  Score=297.62  Aligned_cols=364  Identities=25%  Similarity=0.343  Sum_probs=180.9

Q ss_pred             cCEEEcCCCCCC-cccchhhhhcCCCCCEEECCCCcCCCCCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEE
Q 001719          473 LATLDVSTNFFR-GHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILA  551 (1021)
Q Consensus       473 L~~L~Ls~n~l~-~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~  551 (1021)
                      .+-+|+++|.++ +..|..+-. ++.++.|.|...++. .+|..++.+.+|++|.+++|++. .+-..+ ..++.|+.+.
T Consensus         9 VrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LRsv~   84 (1255)
T KOG0444|consen    9 VRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLRSVI   84 (1255)
T ss_pred             eecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhHHHh
Confidence            344555555555 244444443 455555555555554 45555555555555555555554 222222 1444555555


Q ss_pred             CCCCccc-ccccccccCCCCccEEEccCCcccccCCccccccCccCeEEccCCcCCCcchhhhcCCCCCcEEECCCCccc
Q 001719          552 LSNNNLQ-GHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLE  630 (1021)
Q Consensus       552 L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  630 (1021)
                      +.+|++. .-+|..+..+..|+.|||++|++. +.|..+...+++-+|+|++|++..+....+.+++.|-.|+|++|++.
T Consensus        85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe  163 (1255)
T KOG0444|consen   85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE  163 (1255)
T ss_pred             hhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence            5555543 223444444555555555555554 44444444445555555555554332233444444555555555544


Q ss_pred             CCccccccCCCCCCEEEccCCccccCCCCCCCCCcccEEEccCCccccccchhhhcCccccEEEccCCccC-CCCCcccc
Q 001719          631 GPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLH-GSIPTWID  709 (1021)
Q Consensus       631 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~-~~~p~~~~  709 (1021)
                       .+|..+..+..|++|+|++|+                       +....-..+..+++|++|.+++.+-+ ..+|..+.
T Consensus       164 -~LPPQ~RRL~~LqtL~Ls~NP-----------------------L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld  219 (1255)
T KOG0444|consen  164 -MLPPQIRRLSMLQTLKLSNNP-----------------------LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD  219 (1255)
T ss_pred             -hcCHHHHHHhhhhhhhcCCCh-----------------------hhHHHHhcCccchhhhhhhcccccchhhcCCCchh
Confidence             344444444455555555544                       43332223333444555555543321 24455555


Q ss_pred             CCCCCcEEEcccccccccCCccccCCCCCCEEeccCCcCcccCCcccccccccccccccccccCCCCCCCcccccCCCCC
Q 001719          710 RLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAP  789 (1021)
Q Consensus       710 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (1021)
                      .+.+|..+|+|.|.+. ..|+.+.++.+|+.|+||+|+|+ .+..+.+                                
T Consensus       220 ~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~--------------------------------  265 (1255)
T KOG0444|consen  220 DLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEG--------------------------------  265 (1255)
T ss_pred             hhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHH--------------------------------
Confidence            5555555555555555 45555555555555555555554 1111100                                


Q ss_pred             CCCCCCCcceEEEeecCccccccccccccccEEEcccceecCcCcccccCCCCCCEEEcCCCcCc-cchhhcccCCCCCC
Q 001719          790 NGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLT-GTIPTTFSNLKQIE  868 (1021)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~  868 (1021)
                                               ...++++|++|+|+++ .+|.++..|+.|+.|.+.+|+++ .-||+.+|+|.+|+
T Consensus       266 -------------------------~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le  319 (1255)
T KOG0444|consen  266 -------------------------EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE  319 (1255)
T ss_pred             -------------------------HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence                                     1124455555555555 55555555555555555555544 12555555555555


Q ss_pred             EEeCcCccCCCCCCcccccCCCCCEEEccCCcceecCCCcccccCCCCcccccCccCCC
Q 001719          869 SLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLC  927 (1021)
Q Consensus       869 ~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lC  927 (1021)
                      .+..++|+|. ..|.++..+..|+.|+|+.|+|. ..|+++..++.++.+++..||.+-
T Consensus       320 vf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  320 VFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             HHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCcc
Confidence            5555555554 55555555555555555555555 345554455555555555555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=6.5e-32  Score=289.04  Aligned_cols=394  Identities=26%  Similarity=0.336  Sum_probs=231.7

Q ss_pred             CCcCEEEecCCcccc-CCChhHhhcCCCCCEEECcCCcCCCCCccCccCCCCcCEEEcCCCCCCcccchhhhhcCCCCCE
Q 001719          422 HDLKNVDLSHLNLSG-KFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMD  500 (1021)
Q Consensus       422 ~~L~~L~Ls~n~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~  500 (1021)
                      +-.+-+|+++|.++| .+|..+ ..+++++.|.|...++. .+|..++.+.+|+.|.+++|++. .+-.++.. ++.|+.
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~-Lp~LRs   82 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSD-LPRLRS   82 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhH-HHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhcc-chhhHH
Confidence            345667777777773 566553 56666666666655543 23445555555555555555544 23223322 455555


Q ss_pred             EECCCCcCCC-CCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEECCCCcccccccccccCCCCccEEEccCC
Q 001719          501 LNLSRNAFNG-SIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGN  579 (1021)
Q Consensus       501 L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  579 (1021)
                      +.+..|++.. -+|..+..+..|+.||||+|+++ ++|..+- ...++-.|+||+|+|..+..+-|.+++.|-.|||++|
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence            5555555442 24445555555555555555555 5555443 3445555555555555433333444555555555555


Q ss_pred             cccccCCccccccCccCeEEccCCcCCCcchhhhcCCCCCcEEECCCCccc-CCccccccCCCCCCEEEccCCccccCCC
Q 001719          580 KFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLE-GPIPIEFCQLDYLKILDLSNNTIFGTLP  658 (1021)
Q Consensus       580 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  658 (1021)
                      ++. .+|..+..+..|++|+|++|.+....-..+..+++|+.|.+++.+-+ ..+|.++..                   
T Consensus       161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~-------------------  220 (1255)
T KOG0444|consen  161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD-------------------  220 (1255)
T ss_pred             hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhh-------------------
Confidence            544 34444444555555555555444332333333444444444443321 123333444                   


Q ss_pred             CCCCCCcccEEEccCCccccccchhhhcCccccEEEccCCccCCCCCccccCCCCCcEEEcccccccccCCccccCCCCC
Q 001719          659 SCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEV  738 (1021)
Q Consensus       659 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  738 (1021)
                          +.+|..++++.|++. ..|+.+.++++|+.|+||+|+|+ .+....+...+|+.|++|.|+++ .+|.+++++++|
T Consensus       221 ----l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL  293 (1255)
T KOG0444|consen  221 ----LHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKL  293 (1255)
T ss_pred             ----hhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHH
Confidence                445555555555554 55666677777777777777776 34444555567888888888887 778888888888


Q ss_pred             CEEeccCCcCcc-cCCcccccccccccccccccccCCCCCCCcccccCCCCCCCCCCCCcceEEEeecCccccccccccc
Q 001719          739 RLIDLSHNNLSG-HIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILM  817 (1021)
Q Consensus       739 ~~L~Ls~N~l~g-~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  817 (1021)
                      +.|.+.+|+++- .||+.++++.                                                         
T Consensus       294 ~kLy~n~NkL~FeGiPSGIGKL~---------------------------------------------------------  316 (1255)
T KOG0444|consen  294 TKLYANNNKLTFEGIPSGIGKLI---------------------------------------------------------  316 (1255)
T ss_pred             HHHHhccCcccccCCccchhhhh---------------------------------------------------------
Confidence            888888887762 4666665543                                                         


Q ss_pred             cccEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCCCCCCcccccCCCCCEEEcc
Q 001719          818 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVA  897 (1021)
Q Consensus       818 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls  897 (1021)
                      .|+.+..++|.+. .+|+.+..+..|+.|.|++|++. .+|+++--|+.|+.|||..|.=--..|.--..-+.|+.-|+.
T Consensus       317 ~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID  394 (1255)
T KOG0444|consen  317 QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID  394 (1255)
T ss_pred             hhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence            5667777888887 88888988999999999999888 788888889999999998886443344322223556665554


Q ss_pred             C---C--cceecCCC
Q 001719          898 N---N--NLSGKIPD  907 (1021)
Q Consensus       898 ~---N--~l~g~ip~  907 (1021)
                      +   +  +|-|..|.
T Consensus       395 FSLq~QlrlAG~~pa  409 (1255)
T KOG0444|consen  395 FSLQHQLRLAGQMPA  409 (1255)
T ss_pred             eehhhHHhhccCCcc
Confidence            3   2  34555554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=2.4e-26  Score=235.41  Aligned_cols=251  Identities=25%  Similarity=0.222  Sum_probs=143.6

Q ss_pred             CcCEEEcCCCCCCcccchhhhhcCCCCCEEECCCCcCCCCCCccccCCCCCCEEEcCC-CcCCCccchhhhhcCCCCcEE
Q 001719          472 KLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISY-NQLTGEIPDRMAIGCFSLEIL  550 (1021)
Q Consensus       472 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~i~~~~~~~l~~L~~L  550 (1021)
                      .-++++|..|.|+ .||...|..+++|+.|||++|.|+.+-|.+|.++++|..|-+.+ |+|+ .+|...|.++.+|+.|
T Consensus        68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL  145 (498)
T ss_pred             cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence            3455666666666 66666666667777777777777766677777776666655554 6666 6777766677777777


Q ss_pred             ECCCCcccccccccccCCCCccEEEccCCcccccCCccccccCccCeEEccCCcCCC------------cchhhhcCCCC
Q 001719          551 ALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSG------------KIPRWLGNLSA  618 (1021)
Q Consensus       551 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~p~~l~~l~~  618 (1021)
                      .+.-|++.....+.|..+++|..|.+.+|.+...-...|..+.+++.+.+..|.+..            ..|..++....
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc  225 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC  225 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence            777777766666666667777777777776653333366666666666666665321            11111222111


Q ss_pred             CcEEEC-------------------------CCCcccCCcc-ccccCCCCCCEEEccCCccccCCCCCC-CCCcccEEEc
Q 001719          619 LEDIIM-------------------------PNNNLEGPIP-IEFCQLDYLKILDLSNNTIFGTLPSCF-SPAYIEEIHL  671 (1021)
Q Consensus       619 L~~L~l-------------------------~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~~~L~~L~L  671 (1021)
                      ..-..+                         +.+...++-| ..|..+++|++|++++|+++++-+.+| +...+++|.|
T Consensus       226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L  305 (498)
T KOG4237|consen  226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL  305 (498)
T ss_pred             cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence            111111                         1222222222 235556666666666666665555555 4455555666


Q ss_pred             cCCccccccchhhhcCccccEEEccCCccCCCCCccccCCCCCcEEEcccccc
Q 001719          672 SKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYI  724 (1021)
Q Consensus       672 ~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l  724 (1021)
                      ..|++...-...|.++..|+.|+|.+|+|+...|..|..+.+|..|.|-.|.+
T Consensus       306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            66655555555555555555555555555555555555555555555555544

>PLN03210 Resistant to P

Probab=99.90  E-value=2.1e-22  Score=256.62  Aligned_cols=307  Identities=23%  Similarity=0.248  Sum_probs=170.8

Q ss_pred             CCCEEECCCCcCCCCCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEECCCCcccccccccccCCCCccEEEc
Q 001719          497 GLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQL  576 (1021)
Q Consensus       497 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  576 (1021)
                      +|+.|++.++.+. .+|..| ...+|++|++++|++. .++..+ ..+++|+.|+++++...+.+| .+..+++|++|++
T Consensus       590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L  664 (1153)
T PLN03210        590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKL  664 (1153)
T ss_pred             ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEe
Confidence            3444444444443 333333 2344455555554444 333333 234445555554443322333 2344455555555


Q ss_pred             cCCcccccCCccccccCccCeEEccCCcCCCcchhhhcCCCCCcEEECCCCcccCCccccccCCCCCCEEEccCCccccC
Q 001719          577 DGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGT  656 (1021)
Q Consensus       577 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  656 (1021)
                      ++|.....+|..+.++++|+.|++++|.....+|..+ ++++|+.|++++|...+.+|..   .++|+.|++++|.+. .
T Consensus       665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~  739 (1153)
T PLN03210        665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-E  739 (1153)
T ss_pred             cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-c
Confidence            5544444455555555555555555544333444433 4555555555555443333321   234555555555543 3


Q ss_pred             CCCCCCCCcccEEEccCCcc-------ccccchhhhcCccccEEEccCCccCCCCCccccCCCCCcEEEcccccccccCC
Q 001719          657 LPSCFSPAYIEEIHLSKNKI-------EGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIP  729 (1021)
Q Consensus       657 ~p~~~~~~~L~~L~L~~n~l-------~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  729 (1021)
                      +|..+.+++|++|++.++..       ....+..+..+++|+.|++++|...+.+|.+++++++|+.|++++|...+.+|
T Consensus       740 lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP  819 (1153)
T PLN03210        740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP  819 (1153)
T ss_pred             ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence            44444445555555544321       11122223345677777887777766777777777888888887776555666


Q ss_pred             ccccCCCCCCEEeccCCcCcccCCcccccccccccccccccccCCCCCCCcccccCCCCCCCCCCCCcceEEEeecCccc
Q 001719          730 IQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSY  809 (1021)
Q Consensus       730 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  809 (1021)
                      ..+ ++++|+.|++++|.....+|..                                                      
T Consensus       820 ~~~-~L~sL~~L~Ls~c~~L~~~p~~------------------------------------------------------  844 (1153)
T PLN03210        820 TGI-NLESLESLDLSGCSRLRTFPDI------------------------------------------------------  844 (1153)
T ss_pred             CCC-CccccCEEECCCCCcccccccc------------------------------------------------------
Confidence            655 6777788888776544333321                                                      


Q ss_pred             cccccccccccEEEcccceecCcCcccccCCCCCCEEEcCC-CcCccchhhcccCCCCCCEEeCcCcc
Q 001719          810 YYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH-NNLTGTIPTTFSNLKQIESLDLSYNL  876 (1021)
Q Consensus       810 ~~~~~~~~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~LdLs~N~  876 (1021)
                            ..+++.|+|++|.++ .+|..+..+++|+.|+|++ |+++ .+|..+..+++|+.|+++++.
T Consensus       845 ------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        845 ------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence                  125667888888887 6788888888888888887 4455 466677778888888887774

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.89  E-value=4.3e-22  Score=253.72  Aligned_cols=340  Identities=23%  Similarity=0.262  Sum_probs=274.8

Q ss_pred             chhhhhcCCCCCEEECCCCc------CCCCCCccccCCC-CCCEEEcCCCcCCCccchhhhhcCCCCcEEECCCCccccc
Q 001719          488 PVEIGTYLSGLMDLNLSRNA------FNGSIPSSFADMK-MLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGH  560 (1021)
Q Consensus       488 p~~~~~~l~~L~~L~L~~n~------l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~  560 (1021)
                      ....+..+++|+.|.+..+.      +...+|..|..++ +|+.|++.++.+. .+|..+  ...+|+.|++++|.+. .
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~  625 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-K  625 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-c
Confidence            34445557888888886553      2334677777764 6999999999997 888876  5789999999999987 4


Q ss_pred             ccccccCCCCccEEEccCCcccccCCccccccCccCeEEccCCcCCCcchhhhcCCCCCcEEECCCCcccCCccccccCC
Q 001719          561 IFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQL  640 (1021)
Q Consensus       561 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l  640 (1021)
                      ++..+..+++|+.|++++|...+.+|. +..+++|+.|++++|.....+|..+.++++|+.|++++|...+.+|..+ ++
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence            677788899999999999876667774 7889999999999998878899999999999999999987666788766 79


Q ss_pred             CCCCEEEccCCccccCCCCCCCCCcccEEEccCCccccccchhhhcCccccEEEccCCccC-------CCCCccccCCCC
Q 001719          641 DYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLH-------GSIPTWIDRLPQ  713 (1021)
Q Consensus       641 ~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~-------~~~p~~~~~l~~  713 (1021)
                      ++|+.|++++|...+.+|..  ..+|+.|++++|.+.. +|..+ .+++|+.|++.++...       ...+......++
T Consensus       704 ~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s  779 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS  779 (1153)
T ss_pred             CCCCEEeCCCCCCccccccc--cCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhhhcccc
Confidence            99999999999877777754  4689999999999874 45443 5788999988874422       122223334578


Q ss_pred             CcEEEcccccccccCCccccCCCCCCEEeccCCcCcccCCcccccccccccccccccccCCCCCCCcccccCCCCCCCCC
Q 001719          714 LSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSP  793 (1021)
Q Consensus       714 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (1021)
                      |+.|++++|...+.+|..++++++|+.|++++|+..+.+|... +                                   
T Consensus       780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~-----------------------------------  823 (1153)
T PLN03210        780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N-----------------------------------  823 (1153)
T ss_pred             chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C-----------------------------------
Confidence            9999999999888999999999999999999987666777543 1                                   


Q ss_pred             CCCcceEEEeecCccccccccccccccEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCc
Q 001719          794 IGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLS  873 (1021)
Q Consensus       794 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs  873 (1021)
                                            +.+|+.|++++|..-..+|..   .++|+.|+|++|.++ .+|.++..+++|+.|+|+
T Consensus       824 ----------------------L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~  877 (1153)
T PLN03210        824 ----------------------LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMN  877 (1153)
T ss_pred             ----------------------ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECC
Confidence                                  237889999998765566654   367999999999999 689999999999999999


Q ss_pred             C-ccCCCCCCcccccCCCCCEEEccCCc
Q 001719          874 Y-NLLLGKIPPQLIVLNTLAVFRVANNN  900 (1021)
Q Consensus       874 ~-N~l~g~ip~~l~~l~~L~~L~ls~N~  900 (1021)
                      + |++. .+|..+..++.|+.++++++.
T Consensus       878 ~C~~L~-~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        878 GCNNLQ-RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCcC-ccCcccccccCCCeeecCCCc
Confidence            9 5565 688888999999999999874

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=3.4e-24  Score=219.74  Aligned_cols=393  Identities=21%  Similarity=0.182  Sum_probs=234.6

Q ss_pred             EEcCCCCCCcccchhhhhcCCCCCEEECCCCcCCCCCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEECCC-
Q 001719          476 LDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSN-  554 (1021)
Q Consensus       476 L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~-  554 (1021)
                      ++-++-.++ ++|..+   .+.-..++|..|+|+.+.|.+|+.+++|+.||||+|+|+ .|.+..|.++.+|..|-+.+ 
T Consensus        51 VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~  125 (498)
T KOG4237|consen   51 VDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGN  125 (498)
T ss_pred             EEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcC
Confidence            344444444 677765   567889999999999888889999999999999999998 77777788999888877666 


Q ss_pred             CcccccccccccCCCCccEEEccCCcccccCCccccccCccCeEEccCCcCCCcchhhhcCCCCCcEEECCCCccc----
Q 001719          555 NNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLE----  630 (1021)
Q Consensus       555 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~----  630 (1021)
                      |+|+......|.++.+|+.|.+.-|++.-...+.|..+++|..|.+.+|.+...--..|..+.+++.+.+..|.+.    
T Consensus       126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn  205 (498)
T KOG4237|consen  126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN  205 (498)
T ss_pred             CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence            8899877788999999999999999988777888999999999999999888544447888889999888888732    


Q ss_pred             --------CCccccccCCCCCCEEEccCCccccCCCCCC---------------------------CCCcccEEEccCCc
Q 001719          631 --------GPIPIEFCQLDYLKILDLSNNTIFGTLPSCF---------------------------SPAYIEEIHLSKNK  675 (1021)
Q Consensus       631 --------~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~---------------------------~~~~L~~L~L~~n~  675 (1021)
                              -..|..++.........+.+.++...-+..|                           .+++|+.|+|++|+
T Consensus       206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~  285 (498)
T KOG4237|consen  206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK  285 (498)
T ss_pred             cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence                    1223333333333333333333322222222                           23445555555555


Q ss_pred             cccccchhhhcCccccEEEccCCccCCCCCccccCCCCCcEEEcccccccccCCccccCCCCCCEEeccCCcCcccCC-c
Q 001719          676 IEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIP-P  754 (1021)
Q Consensus       676 l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip-~  754 (1021)
                      ++++-+.+|.....++.|.|..|++...-...|.++..|+.|+|.+|+|+..-|.+|..+.+|..|+|-.|++...-- .
T Consensus       286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~  365 (498)
T KOG4237|consen  286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA  365 (498)
T ss_pred             cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence            555444455555555555555555443333444445555555555555554445555555555555554444431100 0


Q ss_pred             ccccccccccccccccccCCCCCCCcccccCCCCCCCCCC----CCcceEEE---eecCcc---c---cccccccccc-c
Q 001719          755 CLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPI----GEEETVQF---TTKNMS---Y---YYQGRILMSM-S  820 (1021)
Q Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~---~---~~~~~~~~~L-~  820 (1021)
                      +++.+-                  .... ......+..+.    .....+.+   ...+-+   .   .+.-...+-+ +
T Consensus       366 wl~~Wl------------------r~~~-~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~t  426 (498)
T KOG4237|consen  366 WLGEWL------------------RKKS-VVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDT  426 (498)
T ss_pred             HHHHHH------------------hhCC-CCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhh
Confidence            000000                  0000 00111111111    11111111   111000   0   0000011111 1


Q ss_pred             EEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCCCCCCcccccCCCCCEEEccCC
Q 001719          821 GIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANN  899 (1021)
Q Consensus       821 ~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N  899 (1021)
                      ....|++.+. .+|..+-  ..-++|++.+|.++ .+|..  .+.+| .+|+|+|+++..--..|.+++.|.+|-+++|
T Consensus       427 VvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  427 VVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            2334555554 5554443  34567888899988 66766  66777 8999999998777778888999999888886

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=2.1e-21  Score=228.20  Aligned_cols=193  Identities=24%  Similarity=0.321  Sum_probs=95.1

Q ss_pred             CCEEECCCCcCCCCCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEECCCCcccccccccccCCCCccEEEcc
Q 001719          498 LMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLD  577 (1021)
Q Consensus       498 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  577 (1021)
                      -..|++++|.++ .+|..+.  ++|+.|++++|+++ .+|.    .+++|                        ++|+++
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~L------------------------k~LdLs  250 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPEL------------------------RTLEVS  250 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCC------------------------cEEEec
Confidence            445666666665 4454443  25566666666655 4443    12344                        444444


Q ss_pred             CCcccccCCccccccCccCeEEccCCcCCCcchhhhcCCCCCcEEECCCCcccCCccccccCCCCCCEEEccCCccccCC
Q 001719          578 GNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTL  657 (1021)
Q Consensus       578 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  657 (1021)
                      +|+++ .+|..   .++|+.|++++|.+. .+|..   .++|+.|++++|+++ .+|.   ..++|+.|++++|++.+ +
T Consensus       251 ~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-L  317 (788)
T PRK15387        251 GNQLT-SLPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-L  317 (788)
T ss_pred             CCccC-cccCc---ccccceeeccCCchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-C
Confidence            44444 22321   234455555555544 23321   134555566666555 2333   13456666666666654 2


Q ss_pred             CCCCCCCcccEEEccCCccccccchhhhcCccccEEEccCCccCCCCCccccCCCCCcEEEcccccccccCCccccCCCC
Q 001719          658 PSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKE  737 (1021)
Q Consensus       658 p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~  737 (1021)
                      |..  +..|+.|++++|++++. |.   ...+|+.|+|++|++++ +|..   .++|+.|++++|++++ +|...   .+
T Consensus       318 p~l--p~~L~~L~Ls~N~L~~L-P~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l~---~~  383 (788)
T PRK15387        318 PAL--PSELCKLWAYNNQLTSL-PT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPALP---SG  383 (788)
T ss_pred             CCC--cccccccccccCccccc-cc---cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Ccccc---cc
Confidence            321  23455566666665532 21   11356666666666663 3332   2345556666666652 44322   34


Q ss_pred             CCEEeccCCcCc
Q 001719          738 VRLIDLSHNNLS  749 (1021)
Q Consensus       738 L~~L~Ls~N~l~  749 (1021)
                      |+.|++++|+++
T Consensus       384 L~~LdLs~N~Lt  395 (788)
T PRK15387        384 LKELIVSGNRLT  395 (788)
T ss_pred             cceEEecCCccc
Confidence            556666666655

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=1.1e-20  Score=222.21  Aligned_cols=265  Identities=24%  Similarity=0.320  Sum_probs=167.0

Q ss_pred             CcCEEEcCCCCCCcccchhhhhcCCCCCEEECCCCcCCCCCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEE
Q 001719          472 KLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILA  551 (1021)
Q Consensus       472 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~  551 (1021)
                      .-..|+++.+.++ .+|..+.   ++|+.|++.+|+++. +|.   ..++|++|++++|+++ .+|..    .++|+.|+
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~  268 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL----PPGLLELS  268 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc----ccccceee
Confidence            4568999999998 7998774   589999999999994 564   3588999999999999 67742    46888888


Q ss_pred             CCCCcccccccccccCCCCccEEEccCCcccccCCccccccCccCeEEccCCcCCCcchhhhcCCCCCcEEECCCCcccC
Q 001719          552 LSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEG  631 (1021)
Q Consensus       552 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~  631 (1021)
                      +++|.+.. +|..   .++|+.|++++|+++ .+|..   .++|+.|++++|++++ +|..   ..+|+.|++++|.+++
T Consensus       269 Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~  336 (788)
T PRK15387        269 IFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS  336 (788)
T ss_pred             ccCCchhh-hhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc
Confidence            88888774 3332   246777788887776 34432   3456666776666663 3321   1234555555555542


Q ss_pred             CccccccCCCCCCEEEccCCccccCCCCCCCCCcccEEEccCCccccccchhhhcCccccEEEccCCccCCCCCccccCC
Q 001719          632 PIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRL  711 (1021)
Q Consensus       632 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l  711 (1021)
                       +|..                          +.+|+.|+|++|++++. |..   .++|+.|++++|++++ +|..   .
T Consensus       337 -LP~l--------------------------p~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~-LP~l---~  381 (788)
T PRK15387        337 -LPTL--------------------------PSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTS-LPAL---P  381 (788)
T ss_pred             -cccc--------------------------ccccceEecCCCccCCC-CCC---Ccccceehhhcccccc-Cccc---c
Confidence             3321                          22444455555544432 211   2355666677777663 4543   2


Q ss_pred             CCCcEEEcccccccccCCccccCCCCCCEEeccCCcCcccCCcccccccccccccccccccCCCCCCCcccccCCCCCCC
Q 001719          712 PQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNG  791 (1021)
Q Consensus       712 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (1021)
                      .+|+.|++++|++++ +|..   .++|+.|++++|+++ .+|...                                   
T Consensus       382 ~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~-----------------------------------  421 (788)
T PRK15387        382 SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP-----------------------------------  421 (788)
T ss_pred             cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch-----------------------------------
Confidence            467788888888873 5533   246777777777776 344311                                   


Q ss_pred             CCCCCcceEEEeecCccccccccccccccEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhccc
Q 001719          792 SPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFS  862 (1021)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  862 (1021)
                                               ..|+.|++++|+|+ .+|..++.++.|+.|+|++|.|+|.+|..+.
T Consensus       422 -------------------------~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~  466 (788)
T PRK15387        422 -------------------------SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR  466 (788)
T ss_pred             -------------------------hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence                                     12445666666666 5666666666666666666666666665553

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=5.4e-19  Score=209.81  Aligned_cols=76  Identities=18%  Similarity=0.328  Sum_probs=40.5

Q ss_pred             CCCEEECCCCcCCCCCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEECCCCcccccccccccCCCCccEEEc
Q 001719          497 GLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQL  576 (1021)
Q Consensus       497 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  576 (1021)
                      +...|++++++++ .+|..+.  +.|+.|++++|+++ .+|..++   .+|++|++++|.+++ +|..+.  .+|+.|++
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATLP--DTIQEMEL  248 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhhh--ccccEEEC
Confidence            4566777766666 3454432  35666777777666 5555443   356666666665552 233221  23445555


Q ss_pred             cCCccc
Q 001719          577 DGNKFI  582 (1021)
Q Consensus       577 ~~n~l~  582 (1021)
                      ++|.+.
T Consensus       249 s~N~L~  254 (754)
T PRK15370        249 SINRIT  254 (754)
T ss_pred             cCCccC
Confidence            555444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=8.3e-19  Score=208.19  Aligned_cols=140  Identities=26%  Similarity=0.330  Sum_probs=91.0

Q ss_pred             CCcCEEEcCCCCCCcccchhhhhcCCCCCEEECCCCcCCCCCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEE
Q 001719          471 QKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEIL  550 (1021)
Q Consensus       471 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L  550 (1021)
                      .+.+.|+++++.++ .+|..+   .++|+.|++++|+++ .+|..+.  ++|++|++++|+++ .+|..+.   .+|+.|
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L  246 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACI---PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEM  246 (754)
T ss_pred             cCceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEE
Confidence            34578888888887 677655   357888888888888 4555443  57888888888887 7777653   478888


Q ss_pred             ECCCCcccccccccccCCCCccEEEccCCcccccCCccccccCccCeEEccCCcCCCcchhhhcCCCCCcEEECCCCccc
Q 001719          551 ALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLE  630 (1021)
Q Consensus       551 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  630 (1021)
                      ++++|.+. .+|..+.  .+|+.|++++|++. .+|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|.++
T Consensus       247 ~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt  317 (754)
T PRK15370        247 ELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT  317 (754)
T ss_pred             ECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc
Confidence            88888887 4455443  46777777777776 4554432  356666666666553 332221  23444444444444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=1.4e-18  Score=193.16  Aligned_cols=65  Identities=23%  Similarity=0.287  Sum_probs=29.4

Q ss_pred             cCCCCCCEEEcCCCcCccchhhcccC-----CCCCCEEeCcCccCC----CCCCcccccCCCCCEEEccCCcce
Q 001719          838 GYLTRIRALNLSHNNLTGTIPTTFSN-----LKQIESLDLSYNLLL----GKIPPQLIVLNTLAVFRVANNNLS  902 (1021)
Q Consensus       838 ~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~LdLs~N~l~----g~ip~~l~~l~~L~~L~ls~N~l~  902 (1021)
                      ..+++|++|++++|.+++.....+..     .+.|++|++++|.++    ..++..+..++.|+++++++|+++
T Consensus       218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            34444555555555554422222211     245555555555554    122233344455555555555555

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=1.5e-18  Score=192.85  Aligned_cols=275  Identities=23%  Similarity=0.244  Sum_probs=200.8

Q ss_pred             EEEccCCccc-ccCCccccccCccCeEEccCCcCCCc----chhhhcCCCCCcEEECCCCcccC------CccccccCCC
Q 001719          573 RLQLDGNKFI-GEIPKSLSKCYLLGGLYLSDNHLSGK----IPRWLGNLSALEDIIMPNNNLEG------PIPIEFCQLD  641 (1021)
Q Consensus       573 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~------~~p~~l~~l~  641 (1021)
                      .|+|..+.++ ...+..+..+..|+.++++++.++..    ++..+...+++++++++++.+.+      .++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4778888777 34455566778899999999998653    56667788889999999998762      2345677899


Q ss_pred             CCCEEEccCCccccCCCCCC-CC---CcccEEEccCCcccc----ccchhhhcC-ccccEEEccCCccCCC----CCccc
Q 001719          642 YLKILDLSNNTIFGTLPSCF-SP---AYIEEIHLSKNKIEG----RLESIIHYS-PYLMTLDLSYNCLHGS----IPTWI  708 (1021)
Q Consensus       642 ~L~~L~Ls~n~l~~~~p~~~-~~---~~L~~L~L~~n~l~~----~~~~~~~~~-~~L~~L~Ls~N~l~~~----~p~~~  708 (1021)
                      +|+.|++++|.+.+..+..+ ..   ++|++|++++|++++    .+...+..+ ++|+.|++++|.+++.    ++..+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            99999999999976554433 22   449999999999884    233455666 8999999999999843    34456


Q ss_pred             cCCCCCcEEEccccccccc----CCccccCCCCCCEEeccCCcCcccCCcccccccccccccccccccCCCCCCCccccc
Q 001719          709 DRLPQLSYLLLANNYIEGE----IPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVL  784 (1021)
Q Consensus       709 ~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  784 (1021)
                      ..+++|++|++++|.+++.    ++..+..+++|+.|++++|.+++..+..+....                        
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~------------------------  217 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL------------------------  217 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh------------------------
Confidence            6778999999999999853    344556677999999999998743222221110                        


Q ss_pred             CCCCCCCCCCCCcceEEEeecCccccccccccccccEEEcccceecCcCccccc-----CCCCCCEEEcCCCcCc----c
Q 001719          785 PSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIG-----YLTRIRALNLSHNNLT----G  855 (1021)
Q Consensus       785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~~~-----~l~~L~~L~Ls~N~l~----~  855 (1021)
                                                   ...++|+.|++++|.+++.....+.     ..+.|+.|++++|.++    .
T Consensus       218 -----------------------------~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~  268 (319)
T cd00116         218 -----------------------------ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAK  268 (319)
T ss_pred             -----------------------------cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHH
Confidence                                         1234789999999999864333332     2378999999999997    3


Q ss_pred             chhhcccCCCCCCEEeCcCccCCCC----CCcccccC-CCCCEEEccCCc
Q 001719          856 TIPTTFSNLKQIESLDLSYNLLLGK----IPPQLIVL-NTLAVFRVANNN  900 (1021)
Q Consensus       856 ~~p~~l~~l~~L~~LdLs~N~l~g~----ip~~l~~l-~~L~~L~ls~N~  900 (1021)
                      .++..+..+++|+++|+++|.++..    +...+... +.|+++++.+|.
T Consensus       269 ~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         269 DLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            3456677789999999999999854    33344444 567777777764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=2.9e-18  Score=156.12  Aligned_cols=170  Identities=28%  Similarity=0.468  Sum_probs=130.4

Q ss_pred             CCCCCCCCCcccEEEccCCccccccchhhhcCccccEEEccCCccCCCCCccccCCCCCcEEEcccccccccCCccccCC
Q 001719          656 TLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQL  735 (1021)
Q Consensus       656 ~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  735 (1021)
                      .+|..|..+.++.|-|++|+++. +|..+..+.+|+.|++++|++. .+|..++.+++|+.|+++-|++. ..|..|+.+
T Consensus        25 ~~~gLf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~  101 (264)
T KOG0617|consen   25 ELPGLFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF  101 (264)
T ss_pred             hcccccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC
Confidence            34555666777788888888874 4556788889999999999998 68888999999999999999987 789999999


Q ss_pred             CCCCEEeccCCcCcc-cCCcccccccccccccccccccCCCCCCCcccccCCCCCCCCCCCCcceEEEeecCcccccccc
Q 001719          736 KEVRLIDLSHNNLSG-HIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGR  814 (1021)
Q Consensus       736 ~~L~~L~Ls~N~l~g-~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  814 (1021)
                      +.|+.|||++|+++. .+|..+..                                                        
T Consensus       102 p~levldltynnl~e~~lpgnff~--------------------------------------------------------  125 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNENSLPGNFFY--------------------------------------------------------  125 (264)
T ss_pred             chhhhhhccccccccccCCcchhH--------------------------------------------------------
Confidence            999999999998863 23433322                                                        


Q ss_pred             ccccccEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCCCCCCcccccC
Q 001719          815 ILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVL  888 (1021)
Q Consensus       815 ~~~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l  888 (1021)
                       +..|+.|+|+.|.|. .+|..++.+++|+.|.+..|.+- ..|..++.++.|++|++.+|+++ .+|+.++++
T Consensus       126 -m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  126 -MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL  195 (264)
T ss_pred             -HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence             224666777888877 77777888888888888888777 67777888888888888888877 666665543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=9.3e-18  Score=152.82  Aligned_cols=180  Identities=29%  Similarity=0.466  Sum_probs=154.1

Q ss_pred             hhcCccccEEEccCCccCCCCCccccCCCCCcEEEcccccccccCCccccCCCCCCEEeccCCcCcccCCcccccccccc
Q 001719          684 IHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNE  763 (1021)
Q Consensus       684 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~  763 (1021)
                      +.++.+.+.|.|++|+++ .+|..++.+.+|++|++.+|++. .+|..++.+++|++|+++-|++. .+|..++..+   
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p---  102 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP---  102 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc---
Confidence            345677889999999999 67788999999999999999998 89999999999999999999997 6777766544   


Q ss_pred             cccccccccCCCCCCCcccccCCCCCCCCCCCCcceEEEeecCccccccccccccccEEEcccceecC-cCcccccCCCC
Q 001719          764 GYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTG-EIPTQIGYLTR  842 (1021)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g-~ip~~~~~l~~  842 (1021)
                                                                            .|+.|||.+|+++. ..|..|..++.
T Consensus       103 ------------------------------------------------------~levldltynnl~e~~lpgnff~m~t  128 (264)
T KOG0617|consen  103 ------------------------------------------------------ALEVLDLTYNNLNENSLPGNFFYMTT  128 (264)
T ss_pred             ------------------------------------------------------hhhhhhccccccccccCCcchhHHHH
Confidence                                                                  67889999999975 67899999999


Q ss_pred             CCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCCCCCCcccccCCCCCEEEccCCcceecCCCcccccCCC---Cccc
Q 001719          843 IRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTF---EEDS  919 (1021)
Q Consensus       843 L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~---~~~~  919 (1021)
                      |+.|+|+.|.+. .+|..++++++|+.|.+..|.+- ..|..++.++.|+.|.+.+|+|+...|+ ++++.-.   ....
T Consensus       129 lralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r  205 (264)
T KOG0617|consen  129 LRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE-LANLDLVGNKQVMR  205 (264)
T ss_pred             HHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh-hhhhhhhhhHHHHh
Confidence            999999999999 88999999999999999999998 7899999999999999999999965555 3554322   2234


Q ss_pred             ccCccCC
Q 001719          920 YEGNPFL  926 (1021)
Q Consensus       920 ~~gN~~l  926 (1021)
                      .+.|||.
T Consensus       206 ~E~NPwv  212 (264)
T KOG0617|consen  206 MEENPWV  212 (264)
T ss_pred             hhhCCCC
Confidence            5667764

>PLN03150 hypothetical protein; Provisional

Probab=99.59  E-value=3.1e-15  Score=177.91  Aligned_cols=119  Identities=33%  Similarity=0.603  Sum_probs=108.8

Q ss_pred             cccEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCCCCCCcccccCCCCCEEEcc
Q 001719          818 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVA  897 (1021)
Q Consensus       818 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls  897 (1021)
                      .++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+|..+.++++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcceecCCCccccc-CCCCcccccCccCCCCCCCCCCCC
Q 001719          898 NNNLSGKIPDRVAQF-STFEEDSYEGNPFLCGLPLSKSCD  936 (1021)
Q Consensus       898 ~N~l~g~ip~~~~~~-~~~~~~~~~gN~~lC~~~l~~~c~  936 (1021)
                      +|+++|.+|..+... ..+..+++.+|+++|+.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999876543 355678899999999977555664

>PLN03150 hypothetical protein; Provisional

Probab=99.39  E-value=1.2e-12  Score=155.89  Aligned_cols=151  Identities=29%  Similarity=0.432  Sum_probs=95.1

Q ss_pred             cCChHHHHHHHHHhhhhCCCCcccCCcccccCCCCCCCce----eeceeEecC--CCC--cEEEEecCCccccccccccC
Q 001719           25 EGCLEQERSALLQLKHFFNDDQRLQNWVDAADDENYSDCC----QWERVECNK--TTG--RVIKLDLGDIKNRKNRKSER   96 (1021)
Q Consensus        25 ~~c~~~~~~~ll~~k~~~~~~~~l~~w~~~~~~~~~~~~c----~w~gv~c~~--~~~--~v~~l~l~~~~~~~~~~~~~   96 (1021)
                      ..+.++|.+||++||+++.++.. .+|..       ..||    .|.||.|..  .++  +|+.|+|             
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~~-~~W~g-------~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L-------------  425 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPLR-FGWNG-------DPCVPQQHPWSGADCQFDSTKGKWFIDGLGL-------------  425 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCccc-CCCCC-------CCCCCcccccccceeeccCCCCceEEEEEEC-------------
Confidence            45677899999999999875532 47953       3443    799999952  111  2444444             


Q ss_pred             ccCcccccCCCCCCEEeCCCCCCCCccccchhhhccCCCCCCEEeCCCCCCCCcccccCCCCCCCCEEEcCCcccccccC
Q 001719           97 HLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSID  176 (1021)
Q Consensus        97 ~~~~~~~~~l~~L~~LdLs~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~  176 (1021)
                                        ++|.+.+..+    ..++++++|++|+|++|.+.+.+|..++.+++|++|+|++|.++|.+|
T Consensus       426 ------------------~~n~L~g~ip----~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP  483 (623)
T PLN03150        426 ------------------DNQGLRGFIP----NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP  483 (623)
T ss_pred             ------------------CCCCccccCC----HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc
Confidence                              4445555444    356667777777777777766667667777777777777777766666


Q ss_pred             hhccCCCCCCCEEeCCCCCCCCCCCcccccccCC-CCCCCEEECCCCC
Q 001719          177 IKGLDSLSNLEELDMSYNAIDNLVVPQGLERLST-LSNLKFLRLDYNS  223 (1021)
Q Consensus       177 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~-l~~L~~L~L~~n~  223 (1021)
                      . .++++++|++|+|++|.+++..|.    .+.. ..++..+++.+|.
T Consensus       484 ~-~l~~L~~L~~L~Ls~N~l~g~iP~----~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        484 E-SLGQLTSLRILNLNGNSLSGRVPA----ALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             h-HHhcCCCCCEEECcCCcccccCCh----HHhhccccCceEEecCCc
Confidence            5 666666666666666666665553    2222 2334455555543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.23  E-value=5.2e-13  Score=144.47  Aligned_cols=193  Identities=26%  Similarity=0.387  Sum_probs=115.9

Q ss_pred             CCCCCEEEccCCccccCCCCCC-CCCcccEEEccCCccccccchhhhcCccccEEEccCCccCCCCCccccCCCCCcEEE
Q 001719          640 LDYLKILDLSNNTIFGTLPSCF-SPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLL  718 (1021)
Q Consensus       640 l~~L~~L~Ls~n~l~~~~p~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  718 (1021)
                      +.--...|++.|++.. +|..+ .+..|+.+.|..|.+. .+|..+.++..|+.+||+.|+++ ..|..+..|+ |+.|.
T Consensus        74 ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             ccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            4444556677777653 33332 4555666666666665 44556666666677777777666 5555555554 66666


Q ss_pred             cccccccccCCccccCCCCCCEEeccCCcCcccCCcccccccccccccccccccCCCCCCCcccccCCCCCCCCCCCCcc
Q 001719          719 LANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEE  798 (1021)
Q Consensus       719 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  798 (1021)
                      +++|+++ .+|..++.+..|..||.+.|.+. .+|+.++.+.                                      
T Consensus       150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~--------------------------------------  189 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLT--------------------------------------  189 (722)
T ss_pred             EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHH--------------------------------------
Confidence            6666666 56666666666666666666665 4555444333                                      


Q ss_pred             eEEEeecCccccccccccccccEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCC
Q 001719          799 TVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLL  878 (1021)
Q Consensus       799 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~  878 (1021)
                                         +|+.|.+..|++. ..|.++..|+ |..||+|+|+++ .||-.|.+|+.|++|-|.+|.|.
T Consensus       190 -------------------slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  190 -------------------SLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             -------------------HHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence                               4556666666666 5666666443 566777777776 66666777777777777777766


Q ss_pred             CCCCccccc---CCCCCEEEccCC
Q 001719          879 GKIPPQLIV---LNTLAVFRVANN  899 (1021)
Q Consensus       879 g~ip~~l~~---l~~L~~L~ls~N  899 (1021)
                       ..|.++..   ..=.++|+..-.
T Consensus       248 -SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  248 -SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             -CChHHHHhccceeeeeeecchhc
Confidence             44444432   223344444444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.23  E-value=2.4e-13  Score=146.96  Aligned_cols=175  Identities=29%  Similarity=0.471  Sum_probs=151.5

Q ss_pred             CCcccEEEccCCccccccchhhhcCccccEEEccCCccCCCCCccccCCCCCcEEEcccccccccCCccccCCCCCCEEe
Q 001719          663 PAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLID  742 (1021)
Q Consensus       663 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  742 (1021)
                      ...-...+++.|++. .+|..+..+..|+.+.|..|.+. .+|..+.++..|.+|+|+.|+++ ..|..++.|+ |+.|-
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            444567889999988 56777888888999999999998 78999999999999999999998 7888888885 88999


Q ss_pred             ccCCcCcccCCcccccccccccccccccccCCCCCCCcccccCCCCCCCCCCCCcceEEEeecCccccccccccccccEE
Q 001719          743 LSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGI  822 (1021)
Q Consensus       743 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  822 (1021)
                      +++|+++ .+|..++..                                                         ..|..|
T Consensus       150 ~sNNkl~-~lp~~ig~~---------------------------------------------------------~tl~~l  171 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIGLL---------------------------------------------------------PTLAHL  171 (722)
T ss_pred             EecCccc-cCCcccccc---------------------------------------------------------hhHHHh
Confidence            9999997 778776622                                                         367789


Q ss_pred             EcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCCCCCCcccccCCCCCEEEccCCcce
Q 001719          823 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLS  902 (1021)
Q Consensus       823 ~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  902 (1021)
                      |.+.|.+. .+|..++++.+|+.|++..|++. ..|..+..| .|..||+|+|+++ .||-.|.+|+.|++|-|.+|.|.
T Consensus       172 d~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  172 DVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            99999998 89999999999999999999999 567777744 4889999999999 89999999999999999999997


Q ss_pred             e
Q 001719          903 G  903 (1021)
Q Consensus       903 g  903 (1021)
                      .
T Consensus       248 S  248 (722)
T KOG0532|consen  248 S  248 (722)
T ss_pred             C
Confidence            4

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.17  E-value=2.4e-11  Score=138.84  Aligned_cols=123  Identities=34%  Similarity=0.424  Sum_probs=60.3

Q ss_pred             cEEECCCCcccCCccccccCCCCCCEEEccCCccccCCCCCCCCC-cccEEEccCCccccccchhhhcCccccEEEccCC
Q 001719          620 EDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPA-YIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYN  698 (1021)
Q Consensus       620 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N  698 (1021)
                      ..+.+..|.+... ...+..++.++.|++.+|.++...|...... +|+.|++++|++... |..+..+++|+.|++++|
T Consensus        96 ~~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          96 PSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             ceeeccccccccC-chhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhh-hhhhhccccccccccCCc
Confidence            3566666665322 2234444667777777777664444333332 555555555555522 233445555555555555


Q ss_pred             ccCCCCCccccCCCCCcEEEcccccccccCCccccCCCCCCEEeccCC
Q 001719          699 CLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHN  746 (1021)
Q Consensus       699 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  746 (1021)
                      ++. .+|...+..++|+.|++++|+++ .+|........|+.+.+++|
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence            554 33333334445555555555554 33433333333444444444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.12  E-value=9.3e-11  Score=134.05  Aligned_cols=200  Identities=30%  Similarity=0.449  Sum_probs=143.4

Q ss_pred             CEEEccCCccccCCCCCCCCCcccEEEccCCccccccchhhhcCc-cccEEEccCCccCCCCCccccCCCCCcEEEcccc
Q 001719          644 KILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSP-YLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANN  722 (1021)
Q Consensus       644 ~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  722 (1021)
                      ..++++.|.+...+......+.++.|++.+|.++...+ ...... +|+.|++++|++. .+|..++.+++|+.|++++|
T Consensus        96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             ceeeccccccccCchhhhcccceeEEecCCcccccCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            45777777775555555555678888888888875433 444453 7888888888887 55566778888888888888


Q ss_pred             cccccCCccccCCCCCCEEeccCCcCcccCCcccccccccccccccccccCCCCCCCcccccCCCCCCCCCCCCcceEEE
Q 001719          723 YIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQF  802 (1021)
Q Consensus       723 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  802 (1021)
                      +++ .+|...+..+.|+.|++++|+++ .+|.....                                            
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~--------------------------------------------  207 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL--------------------------------------------  207 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh--------------------------------------------
Confidence            887 56666667788888888888886 45543211                                            


Q ss_pred             eecCccccccccccccccEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCCCCCC
Q 001719          803 TTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIP  882 (1021)
Q Consensus       803 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~ip  882 (1021)
                                   ...|+++++++|.+. .++..+..++.+..|.+++|++. .++..++.++++++|++++|+++ .++
T Consensus       208 -------------~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~  271 (394)
T COG4886         208 -------------LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SIS  271 (394)
T ss_pred             -------------hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-ccc
Confidence                         124667778888544 56667777888888888888877 33667778888888888888887 444


Q ss_pred             cccccCCCCCEEEccCCcceecCCCc
Q 001719          883 PQLIVLNTLAVFRVANNNLSGKIPDR  908 (1021)
Q Consensus       883 ~~l~~l~~L~~L~ls~N~l~g~ip~~  908 (1021)
                      . +..+.+++.|++++|.++...|..
T Consensus       272 ~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         272 S-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             c-ccccCccCEEeccCccccccchhh
Confidence            4 778888888888888887766654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.06  E-value=1e-10  Score=113.52  Aligned_cols=127  Identities=35%  Similarity=0.473  Sum_probs=52.0

Q ss_pred             CCCCCCEEeCCCCCCCCccccchhhhcc-CCCCCCEEeCCCCCCCCcccccCCCCCCCCEEEcCCcccccccChhcc-CC
Q 001719          105 PFQQLESLDLSWNNIAGCVENEGVERLS-RLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGL-DS  182 (1021)
Q Consensus       105 ~l~~L~~LdLs~n~i~~~~~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l-~~  182 (1021)
                      +...+++|+|++|.|+.+..      ++ .+.+|++|+|++|.++.  .+.+..+++|++|++++|.++ .++. .+ ..
T Consensus        17 n~~~~~~L~L~~n~I~~Ie~------L~~~l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~-~i~~-~l~~~   86 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIEN------LGATLDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRIS-SISE-GLDKN   86 (175)
T ss_dssp             -------------------S--------TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CH-HHHHH
T ss_pred             cccccccccccccccccccc------hhhhhcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCC-cccc-chHHh
Confidence            44567889999998876533      55 57889999999998875  346788899999999999987 6654 34 46


Q ss_pred             CCCCCEEeCCCCCCCCCCCcccccccCCCCCCCEEECCCCCCCCcc---chhccCCCCCCEEEcC
Q 001719          183 LSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSI---FSSLGGLSSLRILSLA  244 (1021)
Q Consensus       183 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~---~~~l~~l~~L~~L~L~  244 (1021)
                      +++|++|++++|+|....   .+..++.+++|++|++.+|.++...   ...+..+|+|+.||-.
T Consensus        87 lp~L~~L~L~~N~I~~l~---~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   87 LPNLQELYLSNNKISDLN---ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -TT--EEE-TTS---SCC---CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CCcCCEEECcCCcCCChH---HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            889999999999887753   3447788889999999998887432   2346778888888743

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=3.7e-11  Score=126.63  Aligned_cols=113  Identities=27%  Similarity=0.293  Sum_probs=72.6

Q ss_pred             cCCCCCCEEeCCCCCCCCccc-ccCCCCCCCCEEEcCCcccccccCh-hccCCCCCCCEEeCCCCCCCCCCCcccccccC
Q 001719          132 SRLNNLKFLLLDSNYFNNSIF-SSLGGLSSLRILSLADNRLNGSIDI-KGLDSLSNLEELDMSYNAIDNLVVPQGLERLS  209 (1021)
Q Consensus       132 ~~l~~L~~L~Ls~n~~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~i~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~  209 (1021)
                      ++++.||...|.++.+..... +....|++++.||||+|-+..--+. .....+++|+.|+|+.|++.......   .-.
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~---~~~  194 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN---TTL  194 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc---chh
Confidence            567777887777776643221 3456778888888888776521111 13456788888888888776433211   122


Q ss_pred             CCCCCCEEECCCCCCCCc-cchhccCCCCCCEEEcCCcc
Q 001719          210 TLSNLKFLRLDYNSFNSS-IFSSLGGLSSLRILSLADNR  247 (1021)
Q Consensus       210 ~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~L~~n~  247 (1021)
                      .+++|+.|.++.|.++.. +...+..+|+|+.|+|..|.
T Consensus       195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~  233 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE  233 (505)
T ss_pred             hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc
Confidence            567788888888887743 23345667888888888874

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.99  E-value=1.6e-10  Score=112.14  Aligned_cols=111  Identities=32%  Similarity=0.471  Sum_probs=44.6

Q ss_pred             hccCCCCCCEEeCCCCCCCCcccccCC-CCCCCCEEEcCCcccccccChhccCCCCCCCEEeCCCCCCCCCCCccccccc
Q 001719          130 RLSRLNNLKFLLLDSNYFNNSIFSSLG-GLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERL  208 (1021)
Q Consensus       130 ~l~~l~~L~~L~Ls~n~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l  208 (1021)
                      .+.+...+++|+|++|.|+.  .+.++ .+.+|++|+|++|.+. .++  .+..+++|++|++++|+|+...+     .+
T Consensus        14 ~~~n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~~i~~-----~l   83 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRISSISE-----GL   83 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S-CH-----HH
T ss_pred             cccccccccccccccccccc--ccchhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCCcccc-----ch
Confidence            36677789999999999975  34676 5899999999999998 666  68899999999999999997643     33


Q ss_pred             -CCCCCCCEEECCCCCCCCc-cchhccCCCCCCEEEcCCccCcc
Q 001719          209 -STLSNLKFLRLDYNSFNSS-IFSSLGGLSSLRILSLADNRFNG  250 (1021)
Q Consensus       209 -~~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~L~~n~l~~  250 (1021)
                       ..+++|++|++++|+|... ....+..+++|++|++.+|++..
T Consensus        84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence             3689999999999999863 34678899999999999998764

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.96  E-value=1.2e-10  Score=116.27  Aligned_cols=85  Identities=27%  Similarity=0.280  Sum_probs=57.6

Q ss_pred             ccccEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCCCC-CCcccccCCCCCEEE
Q 001719          817 MSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGK-IPPQLIVLNTLAVFR  895 (1021)
Q Consensus       817 ~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~-ip~~l~~l~~L~~L~  895 (1021)
                      ++|+.||||+|.++ .+-.+-..+-+.+.|+|+.|.|...  +.+++|-+|..||+++|+|... --..+++++.|+.+.
T Consensus       329 ~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~  405 (490)
T KOG1259|consen  329 PQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR  405 (490)
T ss_pred             ccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHh
Confidence            35666777777666 4444444566677788888877632  4567777788888888887632 224677888888888


Q ss_pred             ccCCcceec
Q 001719          896 VANNNLSGK  904 (1021)
Q Consensus       896 ls~N~l~g~  904 (1021)
                      +.+|.+.+.
T Consensus       406 L~~NPl~~~  414 (490)
T KOG1259|consen  406 LTGNPLAGS  414 (490)
T ss_pred             hcCCCcccc
Confidence            888888754

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.95  E-value=1.6e-11  Score=125.94  Aligned_cols=47  Identities=28%  Similarity=0.243  Sum_probs=25.0

Q ss_pred             ccCCCCCCCEEeCCCCCCCCCCCcccccccCCCCCCCEEECCCCCCC
Q 001719          179 GLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFN  225 (1021)
Q Consensus       179 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~  225 (1021)
                      .+..+++|++||||.|-+....+.....-++++..|++|.|.+|.+.
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence            34455566666666666544333222223445666666666666554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.92  E-value=2.3e-10  Score=114.35  Aligned_cols=21  Identities=43%  Similarity=0.618  Sum_probs=14.9

Q ss_pred             cccCCCCCCCEEEccCccccc
Q 001719          334 QSIGSLPSLKTLYLLFTNFKG  354 (1021)
Q Consensus       334 ~~l~~l~~L~~L~L~~n~~~~  354 (1021)
                      ..++++|.|+++.+.+|.+.+
T Consensus       393 ~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  393 NHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             cccccccHHHHHhhcCCCccc
Confidence            567777777777777776654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.92  E-value=1.6e-10  Score=118.73  Aligned_cols=167  Identities=23%  Similarity=0.216  Sum_probs=77.2

Q ss_pred             cEEEEecCCccccccccccCccCcccccCCCCCCEEeCCCCCCCCccccch-------hhhccCCCCCCEEeCCCCCCCC
Q 001719           77 RVIKLDLGDIKNRKNRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEG-------VERLSRLNNLKFLLLDSNYFNN  149 (1021)
Q Consensus        77 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~i~~~~~~~~-------~~~l~~l~~L~~L~Ls~n~~~~  149 (1021)
                      .+++|+|+|+.+.   ..-...-...+.+-+.|+..++|+- ++|.+..+.       .+++...++|++||||+|.+..
T Consensus        31 s~~~l~lsgnt~G---~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   31 SLTKLDLSGNTFG---TEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             ceEEEeccCCchh---HHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            4666777665431   0000111223445556666666653 233322211       1344555666666666666643


Q ss_pred             ccccc----CCCCCCCCEEEcCCcccccccCh-------------hccCCCCCCCEEeCCCCCCCCCCCcccccccCCCC
Q 001719          150 SIFSS----LGGLSSLRILSLADNRLNGSIDI-------------KGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLS  212 (1021)
Q Consensus       150 ~~~~~----l~~l~~L~~L~Ls~n~l~~~i~~-------------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~  212 (1021)
                      ..++.    +..++.|++|.|.+|.+. ....             ..+++-++|+++...+|++...........+...+
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~  185 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP  185 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence            33322    345666666666666553 1111             11233344555555555554433222223344445


Q ss_pred             CCCEEECCCCCCCCc----cchhccCCCCCCEEEcCCccC
Q 001719          213 NLKFLRLDYNSFNSS----IFSSLGGLSSLRILSLADNRF  248 (1021)
Q Consensus       213 ~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l  248 (1021)
                      .|+.+.++.|.|...    ...++..+++|+.|||.+|.+
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf  225 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF  225 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh
Confidence            555555555544322    123344455555555555544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=4e-10  Score=118.95  Aligned_cols=196  Identities=23%  Similarity=0.210  Sum_probs=94.8

Q ss_pred             hcCCCCceEEecccccccccch-hhhccCCcccEEEccCccccccccCCCCCCcchhhcCCCCcCEEEecCCccccCCCh
Q 001719          362 HNFTNLEELLLVKSDLHVSQLL-QSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPN  440 (1021)
Q Consensus       362 ~~l~~L~~L~L~~n~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~  440 (1021)
                      ..|++++.|+|+.|-+....+. .....+|+|+.|+++.|.+.........       ..++.|+.|.++.|.++-.--.
T Consensus       143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~-------~~l~~lK~L~l~~CGls~k~V~  215 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT-------LLLSHLKQLVLNSCGLSWKDVQ  215 (505)
T ss_pred             hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch-------hhhhhhheEEeccCCCCHHHHH
Confidence            3445555555555544332222 1233456666666666655422222111       1345667777777776644344


Q ss_pred             hHhhcCCCCCEEECcCCcCCCCCccCccCCCCcCEEEcCCCCCCcccch-hhhhcCCCCCEEECCCCcCCCCCCccccCC
Q 001719          441 WLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPV-EIGTYLSGLMDLNLSRNAFNGSIPSSFADM  519 (1021)
Q Consensus       441 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l  519 (1021)
                      ++...+|+|+.|+|..|...........-+..|++|||++|++. ..+. .....++.|+.|+++.|.+...--....  
T Consensus       216 ~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~--  292 (505)
T KOG3207|consen  216 WILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVE--  292 (505)
T ss_pred             HHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCcc--
Confidence            45566777887777777543333344444555666666666554 2221 1111245555555555555422111110  


Q ss_pred             CCCCEEEcCCCcCCCccchhhhhcCCCCcEEECCCCccccc-ccccccCCCCccEEEccCCccccc
Q 001719          520 KMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGH-IFSKKFNLTNLMRLQLDGNKFIGE  584 (1021)
Q Consensus       520 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~  584 (1021)
                          .             .+.....++|++|++..|++... .-..+..+++|+.|.+..|.+..+
T Consensus       293 ----s-------------~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  293 ----S-------------LDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             ----c-------------hhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence                0             00011344555555555555321 112334456677777777776543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.87  E-value=1.6e-09  Score=131.57  Aligned_cols=129  Identities=28%  Similarity=0.299  Sum_probs=83.9

Q ss_pred             CCCCEEeCCCCCCCCccccchhhhccCCCCCCEEeCCCCC--CCCcccccCCCCCCCCEEEcCCcccccccChhccCCCC
Q 001719          107 QQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNY--FNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLS  184 (1021)
Q Consensus       107 ~~L~~LdLs~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~--~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~  184 (1021)
                      ...|.+.+-+|.+.....      =.+.+.|++|-+..|.  +.......|..++.|++|||++|.-.+.+|. .+++|.
T Consensus       523 ~~~rr~s~~~~~~~~~~~------~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~Li  595 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAG------SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGELV  595 (889)
T ss_pred             hheeEEEEeccchhhccC------CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhhhh
Confidence            445666666665544332      1233467777777764  3333344467777777777777665556775 777777


Q ss_pred             CCCEEeCCCCCCCCCCCcccccccCCCCCCCEEECCCCCCCCccchhccCCCCCCEEEcCCcc
Q 001719          185 NLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNR  247 (1021)
Q Consensus       185 ~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~  247 (1021)
                      +||+|+|++..+..++.     .++++..|.+|++..+......+.....+++|++|.+....
T Consensus       596 ~LryL~L~~t~I~~LP~-----~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  596 HLRYLDLSDTGISHLPS-----GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hhhcccccCCCccccch-----HHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            77777777777775544     67777777777777776555556666667888888776543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.86  E-value=1.8e-09  Score=131.30  Aligned_cols=254  Identities=24%  Similarity=0.298  Sum_probs=155.2

Q ss_pred             CCCCCEEeCCCCC--CCCccccchhhhccCCCCCCEEeCCCCCCCCcccccCCCCCCCCEEEcCCcccccccChhccCCC
Q 001719          106 FQQLESLDLSWNN--IAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSL  183 (1021)
Q Consensus       106 l~~L~~LdLs~n~--i~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l  183 (1021)
                      .+.|++|=+.+|.  +.....    +.|..++.|++|||++|.-.+.+|..+++|.+||+|+++++.+. .+|. .+++|
T Consensus       544 ~~~L~tLll~~n~~~l~~is~----~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~-~l~~L  617 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISG----EFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPS-GLGNL  617 (889)
T ss_pred             CCccceEEEeecchhhhhcCH----HHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccch-HHHHH
Confidence            3468888888775  333333    45888999999999998877889999999999999999999998 8897 99999


Q ss_pred             CCCCEEeCCCCCCCCCCCcccccccCCCCCCCEEECCCCCCC--CccchhccCCCCCCEEEcCCccCcccccccCccccc
Q 001719          184 SNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFN--SSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASS  261 (1021)
Q Consensus       184 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~--~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~  261 (1021)
                      .+|.+||+..+.-...++.    ....+++|++|.+......  ......+.++.+|+.+........  +-   .....
T Consensus       618 k~L~~Lnl~~~~~l~~~~~----i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~--~~---e~l~~  688 (889)
T KOG4658|consen  618 KKLIYLNLEVTGRLESIPG----ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVL--LL---EDLLG  688 (889)
T ss_pred             Hhhheeccccccccccccc----hhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhH--hH---hhhhh
Confidence            9999999998865544431    4455899999998776522  233344556666666655433210  00   00111


Q ss_pred             cccCCcccceeecCCC-cCCCCCCCCCCCCCCeeeCCCCCCCCCcCChhh-----h-hhccccccccCCcccccCccccc
Q 001719          262 ILRVPSFVDLVSLSSW-SVGINTGLDSLSNLEELDMTNNAINNLVVPKDY-----R-CLRKLNTLYLGGIAMIDGSKVLQ  334 (1021)
Q Consensus       262 ~~~~~~~l~~l~l~~~-~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l-----~-~l~~L~~L~l~~~~~~~~~~~~~  334 (1021)
                      .....+..+.+.+..+ .......+..+.+|+.|.+.++.+..+.+ ...     . .++++..+.+..+......   .
T Consensus       689 ~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~-~~~~~~~~~~~f~~l~~~~~~~~~~~r~l---~  764 (889)
T KOG4658|consen  689 MTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVI-EWEESLIVLLCFPNLSKVSILNCHMLRDL---T  764 (889)
T ss_pred             hHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhc-ccccccchhhhHHHHHHHHhhcccccccc---c
Confidence            1111222222222222 23334467788899999998888764221 111     1 1334444444444332221   2


Q ss_pred             ccCCCCCCCEEEccCcccccccCchhhhcCCCCceEEeccccccc
Q 001719          335 SIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHV  379 (1021)
Q Consensus       335 ~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~n~~~~  379 (1021)
                      .....++|+.|.+..+.....+ ......+..++++.+..+.+.+
T Consensus       765 ~~~f~~~L~~l~l~~~~~~e~~-i~~~k~~~~l~~~i~~f~~~~~  808 (889)
T KOG4658|consen  765 WLLFAPHLTSLSLVSCRLLEDI-IPKLKALLELKELILPFNKLEG  808 (889)
T ss_pred             hhhccCcccEEEEecccccccC-CCHHHHhhhcccEEeccccccc
Confidence            2334578888888877766655 3444555555554454444443

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.76  E-value=7e-09  Score=75.27  Aligned_cols=40  Identities=38%  Similarity=0.723  Sum_probs=29.8

Q ss_pred             hHHHHHHHHHhhhhCCC-C-cccCCcccccCCCC-CCCceeeceeEec
Q 001719           28 LEQERSALLQLKHFFND-D-QRLQNWVDAADDEN-YSDCCQWERVECN   72 (1021)
Q Consensus        28 ~~~~~~~ll~~k~~~~~-~-~~l~~w~~~~~~~~-~~~~c~w~gv~c~   72 (1021)
                      +++|++||++||+++.. + ..+.+|..     + ..+||.|.||+|+
T Consensus         1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~-----~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    1 PNQDRQALLAFKKSLNNDPSGVLSSWNP-----SSDSDPCSWSGVTCD   43 (43)
T ss_dssp             -HHHHHHHHHHHHCTT-SC-CCCTT--T-----T--S-CCCSTTEEE-
T ss_pred             CcHHHHHHHHHHHhcccccCcccccCCC-----cCCCCCeeeccEEeC
Confidence            36899999999999984 5 68999986     2 2799999999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.71  E-value=7.8e-09  Score=82.37  Aligned_cols=59  Identities=44%  Similarity=0.596  Sum_probs=28.9

Q ss_pred             cccEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCcc
Q 001719          818 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL  876 (1021)
Q Consensus       818 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~  876 (1021)
                      +|+.|++++|+++...+..|..+++|++|++++|+++...|..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34455555555553333344455555555555555554444455555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.69  E-value=1.1e-08  Score=81.49  Aligned_cols=61  Identities=41%  Similarity=0.562  Sum_probs=57.2

Q ss_pred             CCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCCCCCCcccccCCCCCEEEccCCcc
Q 001719          841 TRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNL  901 (1021)
Q Consensus       841 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l  901 (1021)
                      ++|++|++++|+|+...++.|.++++|++||+++|+++...|..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4689999999999987778999999999999999999988888999999999999999985

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.62  E-value=6.1e-09  Score=119.07  Aligned_cols=129  Identities=34%  Similarity=0.467  Sum_probs=91.5

Q ss_pred             CCCCCCEEeCCCCCCCCccccchhhhccCCCCCCEEeCCCCCCCCcccccCCCCCCCCEEEcCCcccccccChhccCCCC
Q 001719          105 PFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLS  184 (1021)
Q Consensus       105 ~l~~L~~LdLs~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~  184 (1021)
                      .+..+..+++..|.|+...     ..+..+++|..|++.+|.+.. +...+..+++|++|++++|.|+ .+.  .+..++
T Consensus        70 ~l~~l~~l~l~~n~i~~~~-----~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~--~l~~l~  140 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKIL-----NHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLE--GLSTLT  140 (414)
T ss_pred             HhHhHHhhccchhhhhhhh-----cccccccceeeeeccccchhh-cccchhhhhcchheeccccccc-ccc--chhhcc
Confidence            4566666677777776522     247778888888888888764 2222677888888888888887 554  577777


Q ss_pred             CCCEEeCCCCCCCCCCCcccccccCCCCCCCEEECCCCCCCCccc-hhccCCCCCCEEEcCCccCc
Q 001719          185 NLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIF-SSLGGLSSLRILSLADNRFN  249 (1021)
Q Consensus       185 ~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~L~~n~l~  249 (1021)
                      .|+.|++++|.|+...      .+..++.|+.+++++|.+....+ . +..+.+++.+.+.+|.+.
T Consensus       141 ~L~~L~l~~N~i~~~~------~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  141 LLKELNLSGNLISDIS------GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             chhhheeccCcchhcc------CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            7888888888887653      45667888888888888776544 2 577777888888887754

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.54  E-value=2.1e-08  Score=114.74  Aligned_cols=133  Identities=38%  Similarity=0.456  Sum_probs=105.5

Q ss_pred             cccCCCCCCEEeCCCCCCCCccccchhhhccCCCCCCEEeCCCCCCCCcccccCCCCCCCCEEEcCCcccccccChhccC
Q 001719          102 LFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLD  181 (1021)
Q Consensus       102 ~~~~l~~L~~LdLs~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~  181 (1021)
                      .+..+++|++|++.+|.|.++..     .+..+.+|++|++++|.|+.  ...+..+..|+.|++++|.+. .+.  .+.
T Consensus        90 ~l~~~~~l~~l~l~~n~i~~i~~-----~l~~~~~L~~L~ls~N~I~~--i~~l~~l~~L~~L~l~~N~i~-~~~--~~~  159 (414)
T KOG0531|consen   90 HLSKLKSLEALDLYDNKIEKIEN-----LLSSLVNLQVLDLSFNKITK--LEGLSTLTLLKELNLSGNLIS-DIS--GLE  159 (414)
T ss_pred             ccccccceeeeeccccchhhccc-----chhhhhcchheecccccccc--ccchhhccchhhheeccCcch-hcc--CCc
Confidence            35778999999999999987654     27789999999999999976  445778888999999999998 555  677


Q ss_pred             CCCCCCEEeCCCCCCCCCCCcccccccCCCCCCCEEECCCCCCCCccchhccCCCCCCEEEcCCccCcc
Q 001719          182 SLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNG  250 (1021)
Q Consensus       182 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~  250 (1021)
                      .+.+|+.+++++|++..+.+.   . ...+.+++.+++.+|.+...  ..+..+..+..+++..|.++.
T Consensus       160 ~l~~L~~l~l~~n~i~~ie~~---~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~  222 (414)
T KOG0531|consen  160 SLKSLKLLDLSYNRIVDIEND---E-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISK  222 (414)
T ss_pred             cchhhhcccCCcchhhhhhhh---h-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccccee
Confidence            799999999999999876431   0 47889999999999988754  334445555555777777653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=3.8e-09  Score=105.94  Aligned_cols=162  Identities=24%  Similarity=0.200  Sum_probs=85.1

Q ss_pred             CCCEEeCCCCCCCCCCCcccccccCCCCCCCEEECCCCCCCCccchhccCCCCCCEEEcCCccCcccccccCcccccccc
Q 001719          185 NLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILR  264 (1021)
Q Consensus       185 ~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~  264 (1021)
                      .||+||||...|+....   ..-++.|++|+.|.+.++++.+.+...+++-.+|+.|+++.+.  |.....         
T Consensus       186 Rlq~lDLS~s~it~stl---~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s--G~t~n~---------  251 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTL---HGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS--GFTENA---------  251 (419)
T ss_pred             hhHHhhcchhheeHHHH---HHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc--ccchhH---------
Confidence            47777777776654322   1245667777888888887777777777777778888877764  211000         


Q ss_pred             CCcccceeecCCCcCCCCCCCCCCCCCCeeeCCCCCCCCCcCChhhhh-hccccccccCCcccccCc-ccccccCCCCCC
Q 001719          265 VPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRC-LRKLNTLYLGGIAMIDGS-KVLQSIGSLPSL  342 (1021)
Q Consensus       265 ~~~~l~~l~l~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~-l~~L~~L~l~~~~~~~~~-~~~~~l~~l~~L  342 (1021)
                                      ...-+.+|+.|.+|++++|.+..-.+-..... -++|..|+++|+...-.. .+..-...+|+|
T Consensus       252 ----------------~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l  315 (419)
T KOG2120|consen  252 ----------------LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNL  315 (419)
T ss_pred             ----------------HHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCce
Confidence                            00025677778888888876654111111111 145555666655432111 111112345555


Q ss_pred             CEEEccCcccccccCchhhhcCCCCceEEecccc
Q 001719          343 KTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSD  376 (1021)
Q Consensus       343 ~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~n~  376 (1021)
                      .+||+++|.....-....+.+++.|++|.++.|.
T Consensus       316 ~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  316 VHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             eeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence            5555555432221113334445555555554443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=9.5e-08  Score=96.07  Aligned_cols=66  Identities=15%  Similarity=0.235  Sum_probs=43.6

Q ss_pred             CCCCCEEEccCcccccccCchhhhcCCCCceEEecccccccccchhhhccCCcccEEEccCccccc
Q 001719          339 LPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKG  404 (1021)
Q Consensus       339 l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~  404 (1021)
                      +|++..+.+..|.+...........++.+.-|.|+.+++......+++..+++|..|.++.+++..
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            566666777666655433233445566666777777777766666777777888777777776653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.35  E-value=8.9e-09  Score=114.99  Aligned_cols=183  Identities=27%  Similarity=0.363  Sum_probs=110.4

Q ss_pred             cccccCCCCCCEEeCCCCCCCCccccchhhhccCC-CCCCEEeCCCCC--CCCcccccCCC------CCCCCEEEcCCcc
Q 001719          100 ASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRL-NNLKFLLLDSNY--FNNSIFSSLGG------LSSLRILSLADNR  170 (1021)
Q Consensus       100 ~~~~~~l~~L~~LdLs~n~i~~~~~~~~~~~l~~l-~~L~~L~Ls~n~--~~~~~~~~l~~------l~~L~~L~Ls~n~  170 (1021)
                      |-.+..|+.||+|.|.++.+.....      +..+ ..|++|..++.-  +...+....+.      ...|.+.+.++|.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~G------L~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~  175 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAKG------LQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNR  175 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhhh------hHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhh
Confidence            3345678999999999998865222      1111 123333222110  00011111111      2356677777777


Q ss_pred             cccccChhccCCCCCCCEEeCCCCCCCCCCCcccccccCCCCCCCEEECCCCCCCCccchhccCCCCCCEEEcCCccCcc
Q 001719          171 LNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNG  250 (1021)
Q Consensus       171 l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~  250 (1021)
                      +. .+.. .+.-++.|++|||++|+++...      .+..|++|++|||++|.+....--....+. |+.|++++|.++.
T Consensus       176 L~-~mD~-SLqll~ale~LnLshNk~~~v~------~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t  246 (1096)
T KOG1859|consen  176 LV-LMDE-SLQLLPALESLNLSHNKFTKVD------NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT  246 (1096)
T ss_pred             HH-hHHH-HHHHHHHhhhhccchhhhhhhH------HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh
Confidence            75 4443 6666777788888888776542      566777777888877777654322333444 7777777776542


Q ss_pred             cccccCccccccccCCcccceeecCCCcCCCCCCCCCCCCCCeeeCCCCCCCCCcCChhhhhhccccccccCCccccc
Q 001719          251 SIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMID  328 (1021)
Q Consensus       251 ~~p~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~l~~~~~~~  328 (1021)
                                                     ..++.++++|+.||+++|-+.+..--..+..+..|+.|++.||+...
T Consensus       247 -------------------------------L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  247 -------------------------------LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             -------------------------------hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence                                           12567788888888888877664434556677888888888887643

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=5.8e-08  Score=97.60  Aligned_cols=183  Identities=21%  Similarity=0.209  Sum_probs=110.9

Q ss_pred             CCCCeeeCCCCCCCCCcCChhhhhhccccccccCCcccccCcccccccCCCCCCCEEEccCcc-cccccCchhhhcCCCC
Q 001719          289 SNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTN-FKGTIVNQELHNFTNL  367 (1021)
Q Consensus       289 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~~l~~l~~L  367 (1021)
                      ++|+.+||+...++...+-.-+..+++|+.|.++|++..+.  +...++.-.+|+.|+++.++ ++.......+.+|+.|
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~--I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP--IVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH--HHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence            46888999888776544455677888888888888776542  22567778888888888764 4332223346788889


Q ss_pred             ceEEecccccccccchhhhcc-CCcccEEEccCccccccccCCCCCCcchhhcCCCCcCEEEecCCccc-cCCChhHhhc
Q 001719          368 EELLLVKSDLHVSQLLQSIAS-FTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLS-GKFPNWLVEN  445 (1021)
Q Consensus       368 ~~L~L~~n~~~~~~~~~~l~~-l~~L~~L~l~~~~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~~  445 (1021)
                      .+|+++.|.+..+.....+.. -+.|+.|+++|+.-..     ....+......+++|.+|||++|... ...... +..
T Consensus       263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl-----~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~k  336 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL-----QKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFK  336 (419)
T ss_pred             hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh-----hhhHHHHHHHhCCceeeeccccccccCchHHHH-HHh
Confidence            999999888776554333333 3678888888874321     11223333456777777777776432 222222 335


Q ss_pred             CCCCCEEECcCCcCCCCCcc---CccCCCCcCEEEcCCC
Q 001719          446 NTNLKTLLLANNSLFGSFRM---PIHSHQKLATLDVSTN  481 (1021)
Q Consensus       446 l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~Ls~n  481 (1021)
                      ++.|++|.++.|..  ++|.   .+...|+|.+|++.++
T Consensus       337 f~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  337 FNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             cchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            66666666666642  1221   2334445555554443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.12  E-value=4.6e-07  Score=91.31  Aligned_cols=89  Identities=31%  Similarity=0.315  Sum_probs=47.9

Q ss_pred             CCCCCCEEeCCCCCCCCccccchhhhccCCCCCCEEeCCCCCCCCcccccCCCCCCCCEEEcCCcccccccChhccCCCC
Q 001719          105 PFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLS  184 (1021)
Q Consensus       105 ~l~~L~~LdLs~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~  184 (1021)
                      ..++++.|||.+|.|+.-..  .+.-+.++++|++|+|+.|.+...|-.-=..+++|++|-|.+..+.=.-....+..++
T Consensus        69 ~~~~v~elDL~~N~iSdWse--I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSE--IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             HhhhhhhhhcccchhccHHH--HHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence            45667777777777665432  1133556677777777777664322111134556666666666553222222445555


Q ss_pred             CCCEEeCCCCC
Q 001719          185 NLEELDMSYNA  195 (1021)
Q Consensus       185 ~L~~L~Ls~n~  195 (1021)
                      .+++|.+|.|+
T Consensus       147 ~vtelHmS~N~  157 (418)
T KOG2982|consen  147 KVTELHMSDNS  157 (418)
T ss_pred             hhhhhhhccch
Confidence            56666665553

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.09  E-value=4.3e-07  Score=90.26  Aligned_cols=47  Identities=23%  Similarity=0.288  Sum_probs=29.7

Q ss_pred             ccCCCCCCCEEeCCCCCCCCCCCcccccccCCCCCCCEEECCCCCCC
Q 001719          179 GLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFN  225 (1021)
Q Consensus       179 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~  225 (1021)
                      .+.+|++|+..+||.|.+....|+....-+++-+.|.+|.+++|.+.
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            45667777777777776666555544445566666666666666543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.06  E-value=1.7e-07  Score=83.47  Aligned_cols=81  Identities=23%  Similarity=0.416  Sum_probs=41.3

Q ss_pred             ccEEEcccceecCcCccccc-CCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCCCCCCcccccCCCCCEEEcc
Q 001719          819 MSGIDLSCNKLTGEIPTQIG-YLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVA  897 (1021)
Q Consensus       819 L~~L~Ls~N~l~g~ip~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls  897 (1021)
                      |+.++|++|.|. ..|+.|. ..+.++.|||++|.|+ .+|..++.++.|+.|+++.|.+. ..|..+..|.++.+|+..
T Consensus        55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence            444555555555 3333332 2234555555555555 44555555555555555555555 444445555555555555


Q ss_pred             CCcce
Q 001719          898 NNNLS  902 (1021)
Q Consensus       898 ~N~l~  902 (1021)
                      +|.+-
T Consensus       132 ~na~~  136 (177)
T KOG4579|consen  132 ENARA  136 (177)
T ss_pred             CCccc
Confidence            55443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.05  E-value=1.5e-07  Score=105.59  Aligned_cols=205  Identities=27%  Similarity=0.245  Sum_probs=122.9

Q ss_pred             CCCCCEEEccCcccccccCchhhhcCCCCceEEecccccccccchhhhccCCcccEEEccCcccc-----ccccCCCCCC
Q 001719          339 LPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLK-----GALHGQDGGT  413 (1021)
Q Consensus       339 l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~-----~~~~~~~~~~  413 (1021)
                      +++++.|.+-.-.-.+...|..+..+.+|+.|.+.+|++........+  -..|++|-..+- +.     ...|+-....
T Consensus        83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~l--r~qLe~LIC~~S-l~Al~~v~ascggd~~n  159 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQEL--RHQLEKLICHNS-LDALRHVFASCGGDISN  159 (1096)
T ss_pred             HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHH--HHhhhhhhhhcc-HHHHHHHHHHhcccccc
Confidence            344444444332222322255677888899999998887642211111  112333322211 00     0111111111


Q ss_pred             cchhhcCCCCcCEEEecCCccccCCChhHhhcCCCCCEEECcCCcCCCCCccCccCCCCcCEEEcCCCCCCcccchhhhh
Q 001719          414 FPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGT  493 (1021)
Q Consensus       414 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~  493 (1021)
                      -|.|    ..|...+.+.|.+. .+... +.-++.|+.|+|++|+++...  .+..+++|+.|||++|.+. .+|..--.
T Consensus       160 s~~W----n~L~~a~fsyN~L~-~mD~S-Lqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~  230 (1096)
T KOG1859|consen  160 SPVW----NKLATASFSYNRLV-LMDES-LQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMV  230 (1096)
T ss_pred             chhh----hhHhhhhcchhhHH-hHHHH-HHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchh
Confidence            2222    35777788888776 23332 466788899999999887643  6677888899999998887 66643322


Q ss_pred             cCCCCCEEECCCCcCCCCCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEECCCCccc
Q 001719          494 YLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQ  558 (1021)
Q Consensus       494 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~  558 (1021)
                      .+ +|+.|.+++|.++..  ..+.++.+|+.||+++|-+.+.-.-.....+..|+.|.|.+|.+-
T Consensus       231 gc-~L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  231 GC-KLQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hh-hheeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            23 488888998888633  357788888888999888775333333335667888888888764

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.04  E-value=4.1e-07  Score=96.14  Aligned_cols=64  Identities=20%  Similarity=0.141  Sum_probs=32.4

Q ss_pred             CCCCCCCEEeCCCCCCCCCCCccccccc-CCCCCCCEEECCCC-CCCCccch-hccCCCCCCEEEcCCcc
Q 001719          181 DSLSNLEELDMSYNAIDNLVVPQGLERL-STLSNLKFLRLDYN-SFNSSIFS-SLGGLSSLRILSLADNR  247 (1021)
Q Consensus       181 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l-~~l~~L~~L~L~~n-~i~~~~~~-~l~~l~~L~~L~L~~n~  247 (1021)
                      .+++++++|++.++.....   ..+..+ ..+++|++|++..| .++..... -...+++|++|+++++.
T Consensus       161 ~~CpnIehL~l~gc~~iTd---~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~  227 (483)
T KOG4341|consen  161 SNCPNIEHLALYGCKKITD---SSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCP  227 (483)
T ss_pred             hhCCchhhhhhhcceeccH---HHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCc
Confidence            4566666666665542111   111122 24666777776663 33333222 23456777777777764

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.97  E-value=6.6e-07  Score=94.64  Aligned_cols=137  Identities=18%  Similarity=0.113  Sum_probs=72.5

Q ss_pred             cCCCCCEEECcCCcCCCCCc--cCccCCCCcCEEEcCCCC-CCcccchhhhhcCCCCCEEECCCCcCCCC--CCccccCC
Q 001719          445 NNTNLKTLLLANNSLFGSFR--MPIHSHQKLATLDVSTNF-FRGHIPVEIGTYLSGLMDLNLSRNAFNGS--IPSSFADM  519 (1021)
Q Consensus       445 ~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~-l~~~ip~~~~~~l~~L~~L~L~~n~l~~~--~p~~~~~l  519 (1021)
                      ++..|+.|..+++...+..+  .--....+|+.+.++.++ ++..--..++.+++.|+.+++..+.....  +...=.++
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            34555666655554322111  112345666666666664 33222334455567777777777654311  11222356


Q ss_pred             CCCCEEEcCCCcCCCccc----hhhhhcCCCCcEEECCCCccc-ccccccccCCCCccEEEccCCcc
Q 001719          520 KMLKSLDISYNQLTGEIP----DRMAIGCFSLEILALSNNNLQ-GHIFSKKFNLTNLMRLQLDGNKF  581 (1021)
Q Consensus       520 ~~L~~L~Ls~n~l~~~i~----~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l  581 (1021)
                      +.|+++.++++.....-.    .....+...|+.+.++++... ....+.+..+++|+.+++-+++-
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            777777777765321110    011124456777777777644 33345556677888888877753

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.96  E-value=3.9e-07  Score=81.20  Aligned_cols=100  Identities=21%  Similarity=0.320  Sum_probs=60.4

Q ss_pred             EEEcccceecCcCcccc---cCCCCCCEEEcCCCcCccchhhccc-CCCCCCEEeCcCccCCCCCCcccccCCCCCEEEc
Q 001719          821 GIDLSCNKLTGEIPTQI---GYLTRIRALNLSHNNLTGTIPTTFS-NLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRV  896 (1021)
Q Consensus       821 ~L~Ls~N~l~g~ip~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l  896 (1021)
                      .+||+++++- .|++..   .....|+..+|++|.+.. .|..|. ..+.++.|+|++|+|+ .+|.++..++.|+.+|+
T Consensus        31 ~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   31 FLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL  107 (177)
T ss_pred             hcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence            4566666654 344433   333455556777777773 343443 3346777777777776 66777777777777777


Q ss_pred             cCCcceecCCCcccccCCCCcccccCcc
Q 001719          897 ANNNLSGKIPDRVAQFSTFEEDSYEGNP  924 (1021)
Q Consensus       897 s~N~l~g~ip~~~~~~~~~~~~~~~gN~  924 (1021)
                      ++|.+.. .|..+.++.+|..++..+|.
T Consensus       108 ~~N~l~~-~p~vi~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen  108 RFNPLNA-EPRVIAPLIKLDMLDSPENA  134 (177)
T ss_pred             ccCcccc-chHHHHHHHhHHHhcCCCCc
Confidence            7777763 34445556666666555553

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.87  E-value=1.1e-06  Score=87.47  Aligned_cols=95  Identities=19%  Similarity=0.191  Sum_probs=52.1

Q ss_pred             cCCCCCCCCEEEcCCcccccccCh---hccCCCCCCCEEeCCCCCCCCC---CCc---ccccccCCCCCCCEEECCCCCC
Q 001719          154 SLGGLSSLRILSLADNRLNGSIDI---KGLDSLSNLEELDMSYNAIDNL---VVP---QGLERLSTLSNLKFLRLDYNSF  224 (1021)
Q Consensus       154 ~l~~l~~L~~L~Ls~n~l~~~i~~---~~l~~l~~L~~L~Ls~n~l~~~---~~~---~~~~~l~~l~~L~~L~L~~n~i  224 (1021)
                      .+..+..+..+|||+|.|......   ..+++-.+|+..++|.-.....   .+.   -.+..+.+|++|+..+||.|.+
T Consensus        25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            345577888888888887643211   1345566777777765322111   110   0112455666667777766666


Q ss_pred             CCccchh----ccCCCCCCEEEcCCccC
Q 001719          225 NSSIFSS----LGGLSSLRILSLADNRF  248 (1021)
Q Consensus       225 ~~~~~~~----l~~l~~L~~L~L~~n~l  248 (1021)
                      ....|..    ++.-..|++|.+++|.+
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCC
Confidence            5544433    34445566666666543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.83  E-value=1.9e-05  Score=57.38  Aligned_cols=36  Identities=39%  Similarity=0.653  Sum_probs=22.0

Q ss_pred             CCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCC
Q 001719          842 RIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLL  878 (1021)
Q Consensus       842 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~  878 (1021)
                      +|++|++++|+|+ .+|..+++|++|+.|++++|+|+
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4666666666666 45555666666666666666665

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.68  E-value=9.6e-05  Score=80.96  Aligned_cols=54  Identities=13%  Similarity=0.066  Sum_probs=28.4

Q ss_pred             CCcccEEEccCCccccccchhhhcCccccEEEccCCccCCCCCccccCCCCCcEEEcccc
Q 001719          663 PAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANN  722 (1021)
Q Consensus       663 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  722 (1021)
                      +..++.|++++|.++.. |   ...++|+.|.++++.--..+|..+  .++|+.|++++|
T Consensus        51 ~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            35566666666655533 2   122356666666543323445433  245666666665

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.64  E-value=4.4e-05  Score=55.44  Aligned_cols=37  Identities=32%  Similarity=0.658  Sum_probs=32.8

Q ss_pred             cccEEEcccceecCcCcccccCCCCCCEEEcCCCcCcc
Q 001719          818 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTG  855 (1021)
Q Consensus       818 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~  855 (1021)
                      +|+.|++++|+|+ .+|..+++|++|+.|++++|+|+.
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            6889999999999 788889999999999999999994

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.60  E-value=0.00011  Score=70.74  Aligned_cols=106  Identities=28%  Similarity=0.342  Sum_probs=63.4

Q ss_pred             CCCEEeCCCCCCCCcccccCCCCCCCCEEEcCCcccccccChhccCCCCCCCEEeCCCCCCCCCCCcccccccCCCCCCC
Q 001719          136 NLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLK  215 (1021)
Q Consensus       136 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~  215 (1021)
                      ....+||++|.+..  ...|..+..|.+|.|++|+|+ .|.+.--.-+++|+.|.|.+|+|...   .++..+..|++|+
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l---~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQEL---GDLDPLASCPKLE  116 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhh---hhcchhccCCccc
Confidence            44456666665532  334566666677777777666 55542223455677777777766654   2334566777777


Q ss_pred             EEECCCCCCCCcc---chhccCCCCCCEEEcCCcc
Q 001719          216 FLRLDYNSFNSSI---FSSLGGLSSLRILSLADNR  247 (1021)
Q Consensus       216 ~L~L~~n~i~~~~---~~~l~~l~~L~~L~L~~n~  247 (1021)
                      +|.+-+|.++...   .-.+..+++|+.||..+-.
T Consensus       117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             eeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            7777777665431   1235677788888776543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.46  E-value=0.00038  Score=76.37  Aligned_cols=55  Identities=11%  Similarity=0.079  Sum_probs=31.4

Q ss_pred             cCCCCcEEECCCCcccccccccccCCCCccEEEccCCcccccCCccccccCccCeEEccCC
Q 001719          543 GCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDN  603 (1021)
Q Consensus       543 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  603 (1021)
                      .+.+++.|++++|.++.. |.   -..+|++|.+++|.-...+|..+  .++|+.|++++|
T Consensus        50 ~~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         50 EARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HhcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            456777777777766632 31   12357777777654333445433  245666666665

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.46  E-value=0.00018  Score=69.27  Aligned_cols=113  Identities=25%  Similarity=0.249  Sum_probs=87.8

Q ss_pred             CCCCCEEeCCCCCCCCccccchhhhccCCCCCCEEeCCCCCCCCcccccCCCCCCCCEEEcCCcccccccChhccCCCCC
Q 001719          106 FQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSN  185 (1021)
Q Consensus       106 l~~L~~LdLs~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~  185 (1021)
                      ......+||++|++.....      |..++.|.+|.|.+|.|+..-|.--.-+++|+.|.|.+|++..--....+..|++
T Consensus        41 ~d~~d~iDLtdNdl~~l~~------lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~  114 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKLDN------LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPK  114 (233)
T ss_pred             ccccceecccccchhhccc------CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCc
Confidence            3466789999999876644      8899999999999999987666655667889999999998863222346889999


Q ss_pred             CCEEeCCCCCCCCCCCcccccccCCCCCCCEEECCCCCCC
Q 001719          186 LEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFN  225 (1021)
Q Consensus       186 L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~  225 (1021)
                      |++|.+-+|.++...- .-..-+..+++|++||+......
T Consensus       115 L~~Ltll~Npv~~k~~-YR~yvl~klp~l~~LDF~kVt~~  153 (233)
T KOG1644|consen  115 LEYLTLLGNPVEHKKN-YRLYVLYKLPSLRTLDFQKVTRK  153 (233)
T ss_pred             cceeeecCCchhcccC-ceeEEEEecCcceEeehhhhhHH
Confidence            9999999998876432 22235788999999999876543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.40  E-value=9.3e-05  Score=88.36  Aligned_cols=138  Identities=23%  Similarity=0.343  Sum_probs=95.8

Q ss_pred             CCCCCEEeCCCCCCCCccccchhhhcc-CCCCCCEEeCCCCCCCCc-ccccCCCCCCCCEEEcCCcccccccChhccCCC
Q 001719          106 FQQLESLDLSWNNIAGCVENEGVERLS-RLNNLKFLLLDSNYFNNS-IFSSLGGLSSLRILSLADNRLNGSIDIKGLDSL  183 (1021)
Q Consensus       106 l~~L~~LdLs~n~i~~~~~~~~~~~l~-~l~~L~~L~Ls~n~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l  183 (1021)
                      -.+|++||+++...-..   .+...++ .||.|+.|.+++-.+... ...-..++++|+.||+|+++++ .+  .++++|
T Consensus       121 r~nL~~LdI~G~~~~s~---~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl--~GIS~L  194 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSN---GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL--SGISRL  194 (699)
T ss_pred             HHhhhhcCccccchhhc---cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc--HHHhcc
Confidence            36789999988654321   1223343 588999999888766433 2334567889999999999887 44  378899


Q ss_pred             CCCCEEeCCCCCCCCCCCcccccccCCCCCCCEEECCCCCCCCcc------chhccCCCCCCEEEcCCccCcccc
Q 001719          184 SNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSI------FSSLGGLSSLRILSLADNRFNGSI  252 (1021)
Q Consensus       184 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~------~~~l~~l~~L~~L~L~~n~l~~~~  252 (1021)
                      ++||.|.+.+=.+...   ..+..+.+|++|++||+|........      .+.-..||+|+.||.+++.+.+.+
T Consensus       195 knLq~L~mrnLe~e~~---~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  195 KNLQVLSMRNLEFESY---QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             ccHHHHhccCCCCCch---hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence            9999998877665542   34457888999999999887654321      112245889999999988776543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.33  E-value=0.00049  Score=64.55  Aligned_cols=84  Identities=26%  Similarity=0.278  Sum_probs=29.9

Q ss_pred             hhhhcCCCCCEEECCCCcCCCCCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEECCCCcccccccccccCCC
Q 001719          490 EIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLT  569 (1021)
Q Consensus       490 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  569 (1021)
                      ..+..+++|+.+.+.. .+..+....|.++++|+.+.+.++ +. .++...+.++.+++.+.+.+ .+.......|..++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccc
Confidence            3333344455555443 233333344555555555555443 33 44444444444455544433 22222223333344


Q ss_pred             CccEEEcc
Q 001719          570 NLMRLQLD  577 (1021)
Q Consensus       570 ~L~~L~L~  577 (1021)
                      +|+.+++.
T Consensus        82 ~l~~i~~~   89 (129)
T PF13306_consen   82 NLKNIDIP   89 (129)
T ss_dssp             TECEEEET
T ss_pred             cccccccC
Confidence            44444443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.29  E-value=5.8e-05  Score=90.11  Aligned_cols=108  Identities=23%  Similarity=0.297  Sum_probs=64.8

Q ss_pred             CCCCeeeCCCCCCCCCcCChhh-hhhccccccccCCcccccCcccccccCCCCCCCEEEccCcccccccCchhhhcCCCC
Q 001719          289 SNLEELDMTNNAINNLVVPKDY-RCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNL  367 (1021)
Q Consensus       289 ~~L~~L~Ls~n~~~~~~~p~~l-~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L  367 (1021)
                      .+|+.||+++...-...-|..+ ..+|.|++|.+.+-.+.... +.....++|+|..||+++++++.   ...++++++|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~n---l~GIS~LknL  197 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISN---LSGISRLKNL  197 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccC---cHHHhccccH
Confidence            5788888877543221112222 34667777777665554432 33445667777777777777664   2456677777


Q ss_pred             ceEEecccccccccchhhhccCCcccEEEccCc
Q 001719          368 EELLLVKSDLHVSQLLQSIASFTSLKYLSIRGC  400 (1021)
Q Consensus       368 ~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~  400 (1021)
                      +.|.+.+-.+........+-.+++|+.||+|.-
T Consensus       198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             HHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence            777776666655444445666666776666654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.19  E-value=0.00085  Score=62.88  Aligned_cols=124  Identities=19%  Similarity=0.236  Sum_probs=59.7

Q ss_pred             ccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEECCCCcccccccccccCCCCccEEEccCCcccccCCccccccC
Q 001719          514 SSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCY  593 (1021)
Q Consensus       514 ~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  593 (1021)
                      ..|.++++|+.+.+.. .+. .++...|.++.+|+.+.+..+ +.......|.++++++.+.+.+ .+.......|..++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence            4577777888888774 455 677777777777888877764 5555555666776777777765 33334445566677


Q ss_pred             ccCeEEccCCcCCCcchhhhcCCCCCcEEECCCCcccCCccccccCCCCCC
Q 001719          594 LLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLK  644 (1021)
Q Consensus       594 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~  644 (1021)
                      +|+.+++..+ +.......|.++ +|+.+.+.. .+.......|.++++|+
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            7777777654 443444456665 677776665 33334445566665553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.90  E-value=0.00045  Score=69.73  Aligned_cols=88  Identities=33%  Similarity=0.372  Sum_probs=51.5

Q ss_pred             cCCCCCCCCEEEcCCc--ccccccChhccCCCCCCCEEeCCCCCCCCCCCcccccccCCCCCCCEEECCCCCCCCcc---
Q 001719          154 SLGGLSSLRILSLADN--RLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSI---  228 (1021)
Q Consensus       154 ~l~~l~~L~~L~Ls~n--~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~---  228 (1021)
                      .+-.|++|+.|.+|.|  .+.+.++. ...++++|++|+++.|+|..+   ..+..+..+.+|..|++..|..+...   
T Consensus        60 ~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~l---stl~pl~~l~nL~~Ldl~n~~~~~l~dyr  135 (260)
T KOG2739|consen   60 NFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDL---STLRPLKELENLKSLDLFNCSVTNLDDYR  135 (260)
T ss_pred             cCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccc---cccchhhhhcchhhhhcccCCccccccHH
Confidence            3455566666666666  44444444 445557777777777766642   22235566677777777777665421   


Q ss_pred             chhccCCCCCCEEEcCC
Q 001719          229 FSSLGGLSSLRILSLAD  245 (1021)
Q Consensus       229 ~~~l~~l~~L~~L~L~~  245 (1021)
                      -..|.-+++|++|+-..
T Consensus       136 e~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  136 EKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             HHHHHHhhhhccccccc
Confidence            13355667777776443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.87  E-value=0.00043  Score=69.82  Aligned_cols=111  Identities=23%  Similarity=0.269  Sum_probs=74.0

Q ss_pred             CCCCCCEEeCCCCCCCCccccchhhhccCCCCCCEEeCCCC--CCCCcccccCCCCCCCCEEEcCCcccccccChhccCC
Q 001719          105 PFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSN--YFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDS  182 (1021)
Q Consensus       105 ~l~~L~~LdLs~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n--~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~  182 (1021)
                      .+..|+.|++.+..++...      .+..|++|++|.+|.|  .+.+.++.....+++|++|++++|++.---....+..
T Consensus        41 ~~~~le~ls~~n~gltt~~------~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~  114 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLT------NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE  114 (260)
T ss_pred             cccchhhhhhhccceeecc------cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh
Confidence            3445556666655555433      3677888999999999  5555566666677999999999998862111125678


Q ss_pred             CCCCCEEeCCCCCCCCCCCcccccccCCCCCCCEEECCCC
Q 001719          183 LSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYN  222 (1021)
Q Consensus       183 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n  222 (1021)
                      +.+|..||+..|..+.... ..-..+.-+++|++|+-...
T Consensus       115 l~nL~~Ldl~n~~~~~l~d-yre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  115 LENLKSLDLFNCSVTNLDD-YREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hcchhhhhcccCCcccccc-HHHHHHHHhhhhcccccccc
Confidence            8889999999988776432 11224556788888775543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.26  E-value=0.00091  Score=78.95  Aligned_cols=62  Identities=31%  Similarity=0.233  Sum_probs=30.5

Q ss_pred             CCCCCEEECCCCc-CCCCCCccccC-CCCCCEEEcCCCc-CCCccchhhhhcCCCCcEEECCCCc
Q 001719          495 LSGLMDLNLSRNA-FNGSIPSSFAD-MKMLKSLDISYNQ-LTGEIPDRMAIGCFSLEILALSNNN  556 (1021)
Q Consensus       495 l~~L~~L~L~~n~-l~~~~p~~~~~-l~~L~~L~Ls~n~-l~~~i~~~~~~~l~~L~~L~L~~n~  556 (1021)
                      +++|+.|+++.+. ++...-..+.. +++|++|.+.++. ++...-..+...+++|++|+++.+.
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            4555555555555 33222222222 5556666655554 4433333444455566666666554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.17  E-value=0.00099  Score=78.63  Aligned_cols=36  Identities=28%  Similarity=0.248  Sum_probs=16.3

Q ss_pred             CCCCCEEECCCCC-CCCccchhccC-CCCCCEEEcCCc
Q 001719          211 LSNLKFLRLDYNS-FNSSIFSSLGG-LSSLRILSLADN  246 (1021)
Q Consensus       211 l~~L~~L~L~~n~-i~~~~~~~l~~-l~~L~~L~L~~n  246 (1021)
                      +++|+.|+++.+. ++......++. +++|++|.+.++
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c  279 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNC  279 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCC
Confidence            4555555555544 33333333332 455555554444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.15  E-value=0.00021  Score=71.87  Aligned_cols=102  Identities=30%  Similarity=0.327  Sum_probs=71.0

Q ss_pred             CCCCCCEEeCCCCCCCCcccccCCCCCCCCEEEcCCcccccccChhccCCCCCCCEEeCCCCCCCCCCCcccccccCCCC
Q 001719          133 RLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLS  212 (1021)
Q Consensus       133 ~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~  212 (1021)
                      .+.+.+.|++-+|.+++  .....+++.|++|.||-|+|+ .+.  .+..|++|++|.|..|.|..+.   .+.-+.+++
T Consensus        17 dl~~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIs-sL~--pl~rCtrLkElYLRkN~I~sld---EL~YLknlp   88 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKIS-SLA--PLQRCTRLKELYLRKNCIESLD---ELEYLKNLP   88 (388)
T ss_pred             HHHHhhhhcccCCCccH--HHHHHhcccceeEEeeccccc-cch--hHHHHHHHHHHHHHhcccccHH---HHHHHhcCc
Confidence            34556667777777665  233457778888888888887 444  5778888888888888887652   344677888


Q ss_pred             CCCEEECCCCCCCCccch-----hccCCCCCCEEE
Q 001719          213 NLKFLRLDYNSFNSSIFS-----SLGGLSSLRILS  242 (1021)
Q Consensus       213 ~L~~L~L~~n~i~~~~~~-----~l~~l~~L~~L~  242 (1021)
                      +|+.|.|..|.-.+..+.     .+.-||+|+.||
T Consensus        89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            888888888876654332     356677777775

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.44  E-value=0.0046  Score=37.22  Aligned_cols=19  Identities=58%  Similarity=0.901  Sum_probs=8.3

Q ss_pred             CCEEEcCCCcCccchhhccc
Q 001719          843 IRALNLSHNNLTGTIPTTFS  862 (1021)
Q Consensus       843 L~~L~Ls~N~l~~~~p~~l~  862 (1021)
                      |++|||++|+|+ .+|++|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            344444444444 3443333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.39  E-value=0.0067  Score=36.53  Aligned_cols=19  Identities=47%  Similarity=0.551  Sum_probs=9.8

Q ss_pred             CCEEeCcCccCCCCCCcccc
Q 001719          867 IESLDLSYNLLLGKIPPQLI  886 (1021)
Q Consensus       867 L~~LdLs~N~l~g~ip~~l~  886 (1021)
                      |++|||++|+|+ .||.+|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.29  E-value=0.0019  Score=65.22  Aligned_cols=83  Identities=27%  Similarity=0.338  Sum_probs=54.0

Q ss_pred             CCCCCCCCeeeCCCCCCCCCcCChhhhhhccccccccCCcccccCcccccccCCCCCCCEEEccCcccccccCch----h
Q 001719          285 LDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQ----E  360 (1021)
Q Consensus       285 l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~----~  360 (1021)
                      ..+++.|+.|.|+-|.|+.+   ..+..+++|++|+|..|.+....++ ..+.++|+|+.|+|..|.-.|...+.    .
T Consensus        37 c~kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I~sldEL-~YLknlpsLr~LWL~ENPCc~~ag~nYR~~V  112 (388)
T KOG2123|consen   37 CEKMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCIESLDEL-EYLKNLPSLRTLWLDENPCCGEAGQNYRRKV  112 (388)
T ss_pred             HHhcccceeEEeeccccccc---hhHHHHHHHHHHHHHhcccccHHHH-HHHhcCchhhhHhhccCCcccccchhHHHHH
Confidence            45677888888888888763   5677777788887777766554333 45677788888888777665544221    2


Q ss_pred             hhcCCCCceEE
Q 001719          361 LHNFTNLEELL  371 (1021)
Q Consensus       361 l~~l~~L~~L~  371 (1021)
                      +.-+++|+.||
T Consensus       113 LR~LPnLkKLD  123 (388)
T KOG2123|consen  113 LRVLPNLKKLD  123 (388)
T ss_pred             HHHcccchhcc
Confidence            34455555443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.06  E-value=0.001  Score=76.16  Aligned_cols=88  Identities=26%  Similarity=0.240  Sum_probs=50.0

Q ss_pred             CCEEeCCCCCCCCccccchhhhccCCCCCCEEeCCCCCCCCcccc----cCCCC-CCCCEEEcCCcccccc----cChhc
Q 001719          109 LESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFS----SLGGL-SSLRILSLADNRLNGS----IDIKG  179 (1021)
Q Consensus       109 L~~LdLs~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~----~l~~l-~~L~~L~Ls~n~l~~~----i~~~~  179 (1021)
                      ++.|.|.+|.+...........+....+|..|++++|.+.+.-..    .+... ..|++|++..|.+.+.    +.. .
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~-~  167 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA-V  167 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH-H
Confidence            667777777776654444445666777777777777776543221    22222 4556666666655432    221 3


Q ss_pred             cCCCCCCCEEeCCCCCCC
Q 001719          180 LDSLSNLEELDMSYNAID  197 (1021)
Q Consensus       180 l~~l~~L~~L~Ls~n~l~  197 (1021)
                      +.....++.+|++.|.+.
T Consensus       168 L~~~~~l~~l~l~~n~l~  185 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLI  185 (478)
T ss_pred             HhcccchhHHHHHhcccc
Confidence            444556666666666553

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.43  E-value=0.0017  Score=74.35  Aligned_cols=178  Identities=26%  Similarity=0.224  Sum_probs=120.6

Q ss_pred             ccccCCCCCCEEeCCCCCCCCccccchhhhccCC-CCCCEEeCCCCCCCCc----ccccCCCCCCCCEEEcCCccccc--
Q 001719          101 SLFTPFQQLESLDLSWNNIAGCVENEGVERLSRL-NNLKFLLLDSNYFNNS----IFSSLGGLSSLRILSLADNRLNG--  173 (1021)
Q Consensus       101 ~~~~~l~~L~~LdLs~n~i~~~~~~~~~~~l~~l-~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~--  173 (1021)
                      .++....+|..|++++|.+.+.......+.+... +.|++|++..|.+++.    +...+....+++.+|++.|.+..  
T Consensus       109 ~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g  188 (478)
T KOG4308|consen  109 QALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELG  188 (478)
T ss_pred             HHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhh
Confidence            4566788999999999999854332222344444 6788899999988654    56667789999999999998731  


Q ss_pred             c-cChhcc----CCCCCCCEEeCCCCCCCCCCCcccccccCCCCC-CCEEECCCCCCCCcc----chhccCC-CCCCEEE
Q 001719          174 S-IDIKGL----DSLSNLEELDMSYNAIDNLVVPQGLERLSTLSN-LKFLRLDYNSFNSSI----FSSLGGL-SSLRILS  242 (1021)
Q Consensus       174 ~-i~~~~l----~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~-L~~L~L~~n~i~~~~----~~~l~~l-~~L~~L~  242 (1021)
                      . .....+    ....++++|++++|.++..........+...+. +..+++..|.+.+..    ...+..+ ..+++++
T Consensus       189 ~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~  268 (478)
T KOG4308|consen  189 LLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLD  268 (478)
T ss_pred             hHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhh
Confidence            1 111133    357789999999998874332222224555666 777999999887542    3345555 6788999


Q ss_pred             cCCccCcccccccCccccccccCCcccceeecCCCcCCCCCCCCCCCCCCeeeCCCCCCCC
Q 001719          243 LADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINN  303 (1021)
Q Consensus       243 L~~n~l~~~~p~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~  303 (1021)
                      ++.|.++..-...                         ....+..++.++++.++.|.+..
T Consensus       269 l~~nsi~~~~~~~-------------------------L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  269 LSRNSITEKGVRD-------------------------LAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hhcCCccccchHH-------------------------HHHHHhhhHHHHHhhcccCcccc
Confidence            9999876542221                         01135567789999999887765

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.05  E-value=0.0099  Score=58.65  Aligned_cols=82  Identities=18%  Similarity=0.197  Sum_probs=70.1

Q ss_pred             cccEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCCCCCCcccccCCCCCEEEcc
Q 001719          818 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVA  897 (1021)
Q Consensus       818 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls  897 (1021)
                      ..+.||++.|++. ..-..+.-++.|..||+|.|++. ..|..++++..+..+++..|+++ ..|.++..++.++++++-
T Consensus        43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence            4567999999987 55566777888899999999998 78889999999999999999988 789999999999999988


Q ss_pred             CCcce
Q 001719          898 NNNLS  902 (1021)
Q Consensus       898 ~N~l~  902 (1021)
                      .|.+.
T Consensus       120 ~~~~~  124 (326)
T KOG0473|consen  120 KTEFF  124 (326)
T ss_pred             cCcch
Confidence            88754

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.98  E-value=0.17  Score=28.21  Aligned_cols=11  Identities=55%  Similarity=0.721  Sum_probs=3.5

Q ss_pred             CCEEeCcCccC
Q 001719          867 IESLDLSYNLL  877 (1021)
Q Consensus       867 L~~LdLs~N~l  877 (1021)
                      |+.|||++|+|
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            44444444443

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.58  E-value=0.32  Score=27.10  Aligned_cols=13  Identities=54%  Similarity=0.772  Sum_probs=5.1

Q ss_pred             CCCEEEcCCCcCC
Q 001719          521 MLKSLDISYNQLT  533 (1021)
Q Consensus       521 ~L~~L~Ls~n~l~  533 (1021)
                      +|++|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4455555555544

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.46  E-value=0.023  Score=56.14  Aligned_cols=92  Identities=26%  Similarity=0.340  Sum_probs=77.9

Q ss_pred             cCc-ccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCCCCCCcccccCCCCCEEEccCCcceecCCCccc
Q 001719          832 EIP-TQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVA  910 (1021)
Q Consensus       832 ~ip-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~  910 (1021)
                      +|| .++...+..+.||++.|++. ..-..|+-++.|..||+|.|++. ..|..+..+..+..+++..|+++ ..|.+++
T Consensus        32 ~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~  108 (326)
T KOG0473|consen   32 EIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQK  108 (326)
T ss_pred             ccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccc
Confidence            555 35677889999999999988 45567888999999999999998 78999999999999999999998 5677778


Q ss_pred             ccCCCCcccccCccCC
Q 001719          911 QFSTFEEDSYEGNPFL  926 (1021)
Q Consensus       911 ~~~~~~~~~~~gN~~l  926 (1021)
                      +.+.....+.-+||+.
T Consensus       109 k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  109 KEPHPKKNEQKKTEFF  124 (326)
T ss_pred             ccCCcchhhhccCcch
Confidence            8999988888888753

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.46  E-value=0.8  Score=28.71  Aligned_cols=22  Identities=36%  Similarity=0.563  Sum_probs=15.0

Q ss_pred             CCCCCEEEcCCCcCCCccchhhh
Q 001719          519 MKMLKSLDISYNQLTGEIPDRMA  541 (1021)
Q Consensus       519 l~~L~~L~Ls~n~l~~~i~~~~~  541 (1021)
                      +++|+.|+|++|+++ .+|...|
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            356777777777777 6666654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.46  E-value=0.8  Score=28.71  Aligned_cols=22  Identities=36%  Similarity=0.563  Sum_probs=15.0

Q ss_pred             CCCCCEEEcCCCcCCCccchhhh
Q 001719          519 MKMLKSLDISYNQLTGEIPDRMA  541 (1021)
Q Consensus       519 l~~L~~L~Ls~n~l~~~i~~~~~  541 (1021)
                      +++|+.|+|++|+++ .+|...|
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHc
Confidence            356777777777777 6666654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=84.75  E-value=0.79  Score=28.74  Aligned_cols=14  Identities=43%  Similarity=0.503  Sum_probs=7.1

Q ss_pred             CCCCEEeCcCccCC
Q 001719          865 KQIESLDLSYNLLL  878 (1021)
Q Consensus       865 ~~L~~LdLs~N~l~  878 (1021)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=84.75  E-value=0.79  Score=28.74  Aligned_cols=14  Identities=43%  Similarity=0.503  Sum_probs=7.1

Q ss_pred             CCCCEEeCcCccCC
Q 001719          865 KQIESLDLSYNLLL  878 (1021)
Q Consensus       865 ~~L~~LdLs~N~l~  878 (1021)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=84.48  E-value=0.29  Score=30.10  Aligned_cols=20  Identities=25%  Similarity=0.426  Sum_probs=9.1

Q ss_pred             CCCCEEEcCCCcCccchhhc
Q 001719          841 TRIRALNLSHNNLTGTIPTT  860 (1021)
Q Consensus       841 ~~L~~L~Ls~N~l~~~~p~~  860 (1021)
                      ++|++|+|++|.|++.....
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~   21 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASA   21 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHH
Confidence            34555555555555444433

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.14  E-value=0.22  Score=48.76  Aligned_cols=84  Identities=24%  Similarity=0.160  Sum_probs=45.4

Q ss_pred             CCCCeeeCCCCCCCCCcCChhhhhhccccccccCCcccccCcccccccCCCCCCCEEEccCcccccccCchhhhcCCCCc
Q 001719          289 SNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLE  368 (1021)
Q Consensus       289 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~  368 (1021)
                      ..++.+|-+++.|.. .--+.+..++.++.|.+..|...++..+..--+-.++|+.|+++.|.-..+.....+..+++|+
T Consensus       101 ~~IeaVDAsds~I~~-eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMY-EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR  179 (221)
T ss_pred             ceEEEEecCCchHHH-HHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence            357788888887766 2224555556666666666665554332211123456666666665433222234455555555


Q ss_pred             eEEec
Q 001719          369 ELLLV  373 (1021)
Q Consensus       369 ~L~L~  373 (1021)
                      .|.+.
T Consensus       180 ~L~l~  184 (221)
T KOG3864|consen  180 RLHLY  184 (221)
T ss_pred             HHHhc
Confidence            55544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1021
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-50
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-50
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-12
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-04
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		4e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  198 bits (504), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 175/549 (31%), Positives = 247/549 (44%), Gaps = 109/549 (19%)
Query: 461 GSFRMPIHSHQKLATLDVSTNFFRGHIPV------------------EIGTYLSGLMD-- 500
           G F   I +  +L  L++S+N F G IP                   EI  +LSG  D  
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTL 293
Query: 501 --LNLSRNAFNGSIPSSFA-------------------------DMKMLKSLDISYNQLT 533
             L+LS N F G++P  F                           M+ LK LD+S+N+ +
Sbjct: 294 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 353
Query: 534 GEIPDRMAIGCFSLEILALSNNNLQGHIFSK--KFNLTNLMRLQLDGNKFIGEIPKSLSK 591
           GE+P+ +     SL  L LS+NN  G I     +     L  L L  N F G+IP +LS 
Sbjct: 354 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 413
Query: 592 CYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNN 651
           C  L  L+LS N+LSG IP  LG+LS L D+ +  N LEG IP E   +  L+ L L  N
Sbjct: 414 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 473
Query: 652 TIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRL 711
            + G +PS  S                           L  + LS N L G IP WI RL
Sbjct: 474 DLTGEIPSGLSNCT-----------------------NLNWISLSNNRLTGEIPKWIGRL 510
Query: 712 PQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAP 771
             L+ L L+NN   G IP ++   + +  +DL+ N  +G IP  +   +           
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS---------GK 561
Query: 772 ISSSSDDASTYVLPSVAPNG--------------SPIGEEETVQFTTKN----MSYYYQG 813
           I+++      YV   +  +G                I  E+  + +T+N     S  Y G
Sbjct: 562 IAANFIAGKRYVY--IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 619
Query: 814 RILM------SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQI 867
                     SM  +D+S N L+G IP +IG +  +  LNL HN+++G+IP    +L+ +
Sbjct: 620 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 679
Query: 868 ESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 927
             LDLS N L G+IP  +  L  L    ++NNNLSG IP+ + QF TF    +  NP LC
Sbjct: 680 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLC 738
Query: 928 GLPLSKSCD 936
           G PL + CD
Sbjct: 739 GYPLPR-CD 746

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  198 bits (504), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 176/549 (32%), Positives = 249/549 (45%), Gaps = 109/549 (19%)
Query: 461 GSFRMPIHSHQKLATLDVSTNFFRGHIPV------------------EIGTYLSGLMD-- 500
           G F   I +  +L  L++S+N F G IP                   EI  +LSG  D  
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTL 296
Query: 501 --LNLSRNAFNGSIPSSFA-------------------------DMKMLKSLDISYNQLT 533
             L+LS N F G++P  F                           M+ LK LD+S+N+ +
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356
Query: 534 GEIPDRMAIGCFSLEILALSNNNLQGHIFSK--KFNLTNLMRLQLDGNKFIGEIPKSLSK 591
           GE+P+ +     SL  L LS+NN  G I     +     L  L L  N F G+IP +LS 
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416
Query: 592 CYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNN 651
           C  L  L+LS N+LSG IP  LG+LS L D+ +  N LEG IP E   L Y+K L     
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE---LMYVKTL----- 468
Query: 652 TIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRL 711
                          E + L  N + G + S +     L  + LS N L G IP WI RL
Sbjct: 469 ---------------ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 712 PQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAP 771
             L+ L L+NN   G IP ++   + +  +DL+ N  +G IP  +   +           
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS---------GK 564
Query: 772 ISSSSDDASTYVLPSVAPNG--------------SPIGEEETVQFTTKN----MSYYYQG 813
           I+++      YV   +  +G                I  E+  + +T+N     S  Y G
Sbjct: 565 IAANFIAGKRYVY--IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622
Query: 814 RILM------SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQI 867
                     SM  +D+S N L+G IP +IG +  +  LNL HN+++G+IP    +L+ +
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682
Query: 868 ESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 927
             LDLS N L G+IP  +  L  L    ++NNNLSG IP+ + QF TF    +  NP LC
Sbjct: 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLC 741
Query: 928 GLPLSKSCD 936
           G PL + CD
Sbjct: 742 GYPLPR-CD 749

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 111/254 (43%), Gaps = 30/254 (11%)
Query: 688 PYLMTLDLS-YNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHN 746
           PYL  L +   N L G IP  I +L QL YL + +  + G IP  + Q+K +  +D S+N
Sbjct: 76  PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135
Query: 747 NLSGHIPPC------LVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETV 800
            LSG +PP       LV    +        P S  S    + +  S+  + + +  +   
Sbjct: 136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS---FSKLFTSMTISRNRLTGKIPP 192
Query: 801 QFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLT---GTI 857
            F   N+++            +DLS N L G+     G     + ++L+ N+L    G +
Sbjct: 193 TFANLNLAF------------VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV 240
Query: 858 PTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEE 917
             +    K +  LDL  N + G +P  L  L  L    V+ NNL G+IP +      F+ 
Sbjct: 241 GLS----KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDV 295
Query: 918 DSYEGNPFLCGLPL 931
            +Y  N  LCG PL
Sbjct: 296 SAYANNKCLCGSPL 309

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 842 RIRALNLSHNNLTGT--IPTTFSNLKQIESLDLS-YNLLLGKIPPQLIVLNTLAVFRVAN 898
           R+  L+LS  NL     IP++ +NL  +  L +   N L+G IPP +  L  L    + +
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 899 NNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSC---------DDNGLTTATPEAY 948
            N+SG IPD ++Q  T     +  N     LP S S          D N ++ A P++Y
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 125/305 (40%), Gaps = 45/305 (14%)
Query: 496 SGLMDLNLSRNAFNGSIP-SSFADMKMLKSLDISYNQLTGEI-PDRMAIGCFSLEILALS 553
           SG+ DL+     ++   P      +++++  D+    +  EI PD   +   + +I  L 
Sbjct: 11  SGIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELR 70
Query: 554 NNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLS------- 606
            ++ +G        L +L  L L  NK      K+ S    L  LY+S NHL        
Sbjct: 71  KDDFKG--------LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP 122
Query: 607 -------------GKIPRWL-GNLSALEDIIMPNNNLEG----PIPIEFCQLDYLKILDL 648
                         K+P+ +   L  +  I M  N LE     P   +  +L+YL+I + 
Sbjct: 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182
Query: 649 SNNTIFGTLPSCFSPAYIEEIHLSKNKIEG-RLESIIHYSPYLMTLDLSYNCLHGSIPTW 707
               I   LP   +     E+HL  NKI+   LE ++ YS  L  L L +N +       
Sbjct: 183 KLTGIPKDLPETLN-----ELHLDHNKIQAIELEDLLRYS-KLYRLGLGHNQIRMIENGS 236
Query: 708 IDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLS--GHIPPCLVNTALNEGY 765
           +  LP L  L L NN +   +P  +  LK ++++ L  NN++  G    C V   +   Y
Sbjct: 237 LSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY 295
Query: 766 HEAVA 770
           +  ++
Sbjct: 296 YNGIS 300

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1021
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-173
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-78
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-73
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-67
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-72
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-65
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-51
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-47
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-45
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-60
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-58
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-57
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-55
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-59
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-59
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-50
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-46
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-57
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-52
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-50
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-57
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-55
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-48
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-35
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-32
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-54
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-53
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-46
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-42
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-31
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-37
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-44
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-29
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-25
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-18
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-13
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	5e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  524 bits (1353), Expect = e-173
 Identities = 223/933 (23%), Positives = 345/933 (36%), Gaps = 206/933 (22%)

Query: 26  GCLEQERSALLQLKHFFNDDQRLQNWVDAADDENYSDCCQWERVECNKTTGRVIKLDLGD 85
             L +E   L+  K    D   L +W          + C ++ V C     +V       
Sbjct: 8   QSLYREIHQLISFKDVLPDKNLLPDWSSN------KNPCTFDGVTCR--DDKVT------ 53

Query: 86  IKNRKNRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSN 145
                                    S+DLS   +                          
Sbjct: 54  -------------------------SIDLSSKPLNV------------------------ 64

Query: 146 YFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGL 205
              +++ SSL  L+ L  L L+++ +NGS+                              
Sbjct: 65  -GFSAVSSSLLSLTGLESLFLSNSHINGSV------------------------------ 93

Query: 206 ERLSTLSNLKFLRLDYNSFNSSI--FSSLGGLSSLRILSLADNRFNGSIDIKGKQASSIL 263
                 ++L  L L  NS +  +   +SLG  S L+ L+++ N  +    +         
Sbjct: 94  SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV--------- 144

Query: 264 RVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG 323
                              +G   L++LE LD++ N+I+                   G 
Sbjct: 145 -------------------SGGLKLNSLEVLDLSANSIS-------------------GA 166

Query: 324 IAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLL 383
                             LK L +      G +   ++    NLE L +  S  + S  +
Sbjct: 167 N-----VVGWVLSDGCGELKHLAISGNKISGDV---DVSRCVNLEFLDV--SSNNFSTGI 216

Query: 384 QSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLV 443
             +   ++L++L                                D+S   LSG F   + 
Sbjct: 217 PFLGDCSALQHL--------------------------------DISGNKLSGDFSRAIS 244

Query: 444 ENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNL 503
              T LK L +++N   G    P    + L  L ++ N F G IP  +      L  L+L
Sbjct: 245 -TCTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301

Query: 504 SRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFS 563
           S N F G++P  F    +L+SL +S N  +GE+P    +    L++L LS N   G +  
Sbjct: 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361

Query: 564 KKFNLT-NLMRLQLDGNKFIGEIPKSLSKCYL--LGGLYLSDNHLSGKIPRWLGNLSALE 620
              NL+ +L+ L L  N F G I  +L +     L  LYL +N  +GKIP  L N S L 
Sbjct: 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 421

Query: 621 DIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFS-PAYIEEIHLSKNKIEGR 679
            + +  N L G IP     L  L+ L L  N + G +P        +E + L  N + G 
Sbjct: 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481

Query: 680 LESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVR 739
           + S +     L  + LS N L G IP WI RL  L+ L L+NN   G IP ++   + + 
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541

Query: 740 LIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGS------P 793
            +DL+ N  +G IP  +   +     +           +         A N         
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601

Query: 794 IGEEETVQFTTKNMSY-YYQGRI------LMSMSGIDLSCNKLTGEIPTQIGYLTRIRAL 846
                       N++   Y G          SM  +D+S N L+G IP +IG +  +  L
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661

Query: 847 NLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIP 906
           NL HN+++G+IP    +L+ +  LDLS N L G+IP  +  L  L    ++NNNLSG IP
Sbjct: 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

Query: 907 DRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNG 939
           +   QF TF    +  NP LCG PL +    N 
Sbjct: 722 EM-GQFETFPPAKFLNNPGLCGYPLPRCDPSNA 753

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  268 bits (686), Expect = 7e-78
 Identities = 146/842 (17%), Positives = 241/842 (28%), Gaps = 207/842 (24%)

Query: 108 QLESLDLSWNNIAGCVENEGVERLSR--LNNLKFLLLDSNYFNNSIFSSLGGLSSLRILS 165
             E  D S   +          ++      N+  L L  N       ++    S L  L 
Sbjct: 5   SHEVADCSHLKL---------TQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLD 55

Query: 166 LADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFN 225
           +  N ++     +    L  L+ L++ +N +  L         +  +NL  L L  NS  
Sbjct: 56  VGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQL--SDKT--FAFCTNLTELHLMSNSIQ 110

Query: 226 SSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGL 285
               +      +L  L L+ N  + +                                  
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNGLSSTKL-----------------------------GTQ 141

Query: 286 DSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTL 345
             L NL+EL ++NN I  L                               I +  SLK L
Sbjct: 142 VQLENLQELLLSNNKIQAL-------------------------KSEELDIFANSSLKKL 176

Query: 346 YLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGA 405
            L     K                                  +   L  L +    L  +
Sbjct: 177 ELSSNQIKEFSPG--------------------------CFHAIGRLFGLFLNNVQLGPS 210

Query: 406 LHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVE-NNTNLKTLLLANNSLFGSFR 464
           L  +              ++N+ LS+  LS       +    TNL  L L+ N+L     
Sbjct: 211 LTEKLC-----LELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV--- 262

Query: 465 MPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKS 524
                        V  + F           L  L    L  N        S   +  ++ 
Sbjct: 263 -------------VGNDSFAW---------LPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300

Query: 525 LDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGE 584
           L++  +                    ++S  +L          L  L  L ++ N   G 
Sbjct: 301 LNLKRS----------------FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344

Query: 585 IPKSLSKCYLLGGLYLSDNHLSGK--IPRWLGNL--SALEDIIMPNNNLEGPIPIEFCQL 640
                +    L  L LS++  S +        +L  S L  + +  N +       F  L
Sbjct: 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404

Query: 641 DYLKILDLSNNTIFGTLP-SCFSP-AYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYN 698
            +L++LDL  N I   L    +     I EI+LS NK      +     P L  L L   
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464

Query: 699 CLHG--SIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCL 756
            L    S P+    L  L+ L L+NN I       +  L+++ ++DL HNNL+       
Sbjct: 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA------- 517

Query: 757 VNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRIL 816
                                      L   A  G P                 Y  + L
Sbjct: 518 --------------------------RLWKHANPGGP----------------IYFLKGL 535

Query: 817 MSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL 876
             +  ++L  N            L  ++ ++L  NNL     + F+N   ++SL+L  NL
Sbjct: 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595

Query: 877 LLGKIPPQL-IVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDS-----YEGNPFLCGLP 930
           +              L    +  N       + +A F  +  ++        + +LC  P
Sbjct: 596 ITSVEKKVFGPAFRNLTELDMRFNPFDC-TCESIAWFVNWINETHTNIPELSSHYLCNTP 654

Query: 931 LS 932
             
Sbjct: 655 PH 656

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  254 bits (651), Expect = 5e-73
 Identities = 120/659 (18%), Positives = 226/659 (34%), Gaps = 73/659 (11%)

Query: 106 FQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILS 165
              +  L+L+ N +            +R + L  L +  N  +         L  L++L+
Sbjct: 24  PTNITVLNLTHNQLRRLPAAN----FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN 79

Query: 166 LADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFN 225
           L  N L+   D K     +NL EL +  N+I  +             NL  L L +N  +
Sbjct: 80  LQHNELSQLSD-KTFAFCTNLTELHLMSNSIQKI--KNNP--FVKQKNLITLDLSHNGLS 134

Query: 226 SSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGL 285
           S+   +   L +L+ L L++N+                                     +
Sbjct: 135 STKLGTQVQLENLQELLLSNNKIQALKS---------------------------EELDI 167

Query: 286 DSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGS--KVLQSIGSLPSLK 343
            + S+L++L++++N I     P  +  + +L  L+L  +  +  S  + L    +  S++
Sbjct: 168 FANSSLKKLELSSNQIKEF-SPGCFHAIGRLFGLFLNNV-QLGPSLTEKLCLELANTSIR 225

Query: 344 TLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQL----LQSIASFTSLKYLSIRG 399
            L L  +    T        F  L+   L   DL  + L      S A    L+Y  +  
Sbjct: 226 NLSLSNSQLSTTSNT----TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281

Query: 400 CVLKGALHGQDGGTFP-KFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNS 458
             ++        G F  ++L  +       +S  +L         +    L+ L + +N 
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF-QWLKCLEHLNMEDND 340

Query: 459 LFGSFRMPIHSHQKLATLDVSTNFFRGHIPVE---IGTYLSGLMDLNLSRNAFNGSIPSS 515
           + G           L  L +S +F           +    S L  LNL++N  +     +
Sbjct: 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400

Query: 516 FADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKF-NLTNLMRL 574
           F+ +  L+ LD+  N++  E+  +   G  ++  + LS N     +    F  + +L RL
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ-LTRNSFALVPSLQRL 459

Query: 575 QLDGNKF--IGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGP 632
            L       +   P        L  L LS+N+++      L  L  LE + + +NNL   
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519

Query: 633 IPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMT 692
                       +  LS+               +  ++L  N  +     +      L  
Sbjct: 520 WKHANPGGPIYFLKGLSH---------------LHILNLESNGFDEIPVEVFKDLFELKI 564

Query: 693 LDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIP-IQICQLKEVRLIDLSHNNLSG 750
           +DL  N L+    +  +    L  L L  N I      +     + +  +D+  N    
Sbjct: 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  239 bits (611), Expect = 2e-67
 Identities = 128/608 (21%), Positives = 201/608 (33%), Gaps = 61/608 (10%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSL 155
             L   L      L+ L+L  N ++   +       +   NL  L L SN       +  
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKT----FAFCTNLTELHLMSNSIQKIKNNPF 117

Query: 156 GGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLK 215
               +L  L L+ N L+ +        L NL+EL +S N I  L        +   S+LK
Sbjct: 118 VKQKNLITLDLSHNGLSSTKL-GTQVQLENLQELLLSNNKIQAL--KSEELDIFANSSLK 174

Query: 216 FLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLV--- 272
            L L  N            +  L  L L + +   S+    ++    L   S  +L    
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT---EKLCLELANTSIRNLSLSN 231

Query: 273 -SLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG--IAMIDG 329
             LS+ S     GL   +NL  LD++ N +N +     +  L +L   +L    I  +  
Sbjct: 232 SQLSTTSNTTFLGL-KWTNLTMLDLSYNNLNVVG-NDSFAWLPQLEYFFLEYNNIQHLFS 289

Query: 330 SKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASF 389
                S+  L +++ L L  +  K +I    L    +                  S    
Sbjct: 290 H----SLHGLFNVRYLNLKRSFTKQSISLASLPKIDD-----------------FSFQWL 328

Query: 390 TSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLV---ENN 446
             L++L++    + G                  +LK + LS+   S +           +
Sbjct: 329 KCLEHLNMEDNDIPGI--------KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380

Query: 447 TNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRN 506
           + L  L L  N +             L  LD+  N     +  +    L  + ++ LS N
Sbjct: 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440

Query: 507 AFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAI-GCFSLEILALSNNNLQGHIFSKK 565
            +     +SFA +  L+ L +    L              +L IL LSNNN+        
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500

Query: 566 FNLTNLMRLQLDGNK--------FIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLS 617
             L  L  L L  N           G     L     L  L L  N           +L 
Sbjct: 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560

Query: 618 ALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAY--IEEIHLSKNK 675
            L+ I +  NNL       F     LK L+L  N I       F PA+  + E+ +  N 
Sbjct: 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620

Query: 676 IEGRLESI 683
            +   ESI
Sbjct: 621 FDCTCESI 628

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  249 bits (638), Expect = 7e-72
 Identities = 125/640 (19%), Positives = 214/640 (33%), Gaps = 86/640 (13%)

Query: 135 NNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYN 194
            + K L L  N   +    S      L++L L+   +    D     SLS+L  L ++ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGN 86

Query: 195 AIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDI 254
            I +L    G    S LS+L+ L     +  S     +G L +L+ L++A N        
Sbjct: 87  PIQSL--ALGA--FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ----- 137

Query: 255 KGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLR 314
                                  S  +     +L+NLE LD+++N I ++    D R L 
Sbjct: 138 -----------------------SFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVLH 173

Query: 315 KL----NTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEEL 370
           ++     +L L    M   + +         L  L L        ++   +     LE  
Sbjct: 174 QMPLLNLSLDLSLNPM---NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230

Query: 371 LLVKSDLHVSQLLQSI--ASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVD 428
            LV  +      L+    ++   L  L+                           ++   
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLT---------------------------IEEFR 263

Query: 429 LSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIP 488
           L++L+        L    TN+ +  L + ++          +     L++    F     
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT 321

Query: 489 VEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAI-GCFSL 547
                 L  L  L  + N   G    S  D+  L+ LD+S N L+ +     +  G  SL
Sbjct: 322 ----LKLKSLKRLTFTSN--KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 548 EILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKS-LSKCYLLGGLYLSDNHLS 606
           + L LS N +   + S    L  L  L    +        S       L  L +S  H  
Sbjct: 376 KYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 607 GKIPRWLGNLSALEDIIMPNNNLEGPI-PIEFCQLDYLKILDLSNNTIFGTLPSCFSP-A 664
                    LS+LE + M  N+ +    P  F +L  L  LDLS   +    P+ F+  +
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 665 YIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLP-QLSYLLLANNY 723
            ++ +++S N               L  LD S N +  S    +   P  L++L L  N 
Sbjct: 495 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 554

Query: 724 IEGEIPIQ--ICQLKEVRLIDLSHNNLSGHIPPCLVNTAL 761
                  Q  +  +K+ R + +    +    P       +
Sbjct: 555 FACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPV 594

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  231 bits (591), Expect = 2e-65
 Identities = 114/649 (17%), Positives = 219/649 (33%), Gaps = 93/649 (14%)

Query: 109 LESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLAD 168
            ++LDLS+N +                 L+ L L           +   LS L  L L  
Sbjct: 30  TKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 169 NRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNS-S 227
           N +           LS+L++L      + +L        +  L  LK L + +N   S  
Sbjct: 86  NPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFP----IGHLKTLKELNVAHNLIQSFK 140

Query: 228 IFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDS 287
           +      L++L  L L+ N+                       L  +             
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYC------------TDLRVLHQMPL----------- 177

Query: 288 LSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYL 347
                 LD++ N +N +  P  ++ +R L+ L L        + +   I  L  L+   L
Sbjct: 178 --LNLSLDLSLNPMNFIQ-PGAFKEIR-LHKLTLRN-NFDSLNVMKTCIQGLAGLEVHRL 232

Query: 348 LFTNFKGTIVNQELHNFT-------NLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGC 400
           +   F+     ++             +EE  L   D ++  ++      T++   S+   
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292

Query: 401 VLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLF 460
            ++                +    ++++L +      FP   +++   L        + F
Sbjct: 293 TIERVKDFS----------YNFGWQHLELVNCKFGQ-FPTLKLKSLKRLTFTSNKGGNAF 341

Query: 461 GSFRMPIHSHQKLATLDVSTNF--FRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFAD 518
               +P      L  LD+S N   F+G          + L  L+LS N     + S+F  
Sbjct: 342 SEVDLP-----SLEFLDLSRNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVIT-MSSNFLG 394

Query: 519 MKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDG 578
           ++ L+ LD  ++ L       + +   +L  L +S+ + +         L++L  L++ G
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 579 NKFIGEI-PKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEF 637
           N F     P   ++   L  L LS   L    P    +LS+L+ + M +NN        +
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514

Query: 638 CQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSY 697
             L+ L++LD S N I  +             H   +               L  L+L+ 
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQ-------HFPSS---------------LAFLNLTQ 552

Query: 698 NCLHGSIPT--WIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLS 744
           N    +     ++  +     LL+    +E   P      + + ++ L+
Sbjct: 553 NDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS---DKQGMPVLSLN 598

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  188 bits (480), Expect = 9e-51
 Identities = 102/538 (18%), Positives = 188/538 (34%), Gaps = 43/538 (7%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNN-SIFSS 154
           + L    F+    L+ L     N+A          +  L  LK L +  N   +  +   
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFP----IGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 155 LGGLSSLRILSLADNRLNGSI--DIKGLDSLSNLE-ELDMSYNAIDNLVVPQGLERLSTL 211
              L++L  L L+ N++      D++ L  +  L   LD+S N ++ +            
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ-----PGAFKE 199

Query: 212 SNLKFLRLDYNSFNSSIFS-SLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVP---- 266
             L  L L  N  + ++    + GL+ L +  L    F    +++    S++  +     
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 267 SFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAM 326
               L  L  +   I    + L+N+    + +  I  +    D+        L L     
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK---DFSYNFGWQHLELVNCK- 315

Query: 327 IDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLL-QS 385
                      +L       L FT+ KG     E+ +  +LE L L ++ L       QS
Sbjct: 316 ------FGQFPTLKLKSLKRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 386 IASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVEN 445
               TSLKYL +    +          T          L+++D  H NL       +  +
Sbjct: 369 DFGTTSLKYLDLSFNGVI---------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419

Query: 446 NTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSR 505
             NL  L +++     +F    +    L  L ++ N F+ +   +I T L  L  L+LS+
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 506 NAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKK 565
                  P++F  +  L+ L++S+N               SL++L  S N++      + 
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK-CLNSLQVLDYSLNHIMTSKKQEL 538

Query: 566 FNL-TNLMRLQLDGNKFIGEIPKSLSKCYL--LGGLYLSDNHLSGKIPRWLGNLSALE 620
            +  ++L  L L  N F           ++     L +    +    P     +  L 
Sbjct: 539 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLS 596

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  178 bits (454), Expect = 2e-47
 Identities = 94/555 (16%), Positives = 163/555 (29%), Gaps = 80/555 (14%)

Query: 364 FTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHD 423
             + + L L  + L       S  SF  L+ L +  C ++                    
Sbjct: 27  PFSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQT--------IEDGAYQSLSH 77

Query: 424 LKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFF 483
           L  + L+   +            ++L+ L+    +L      PI   + L  L+V+ N  
Sbjct: 78  LSTLILTGNPIQSLALGAF-SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 484 RGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLK----SLDISYNQLTGEIPDR 539
           +     E  + L+ L  L+LS N       +    +  +     SLD+S N +    P  
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG- 195

Query: 540 MAIGCFSLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNKFIGEI---PKSLSKCYLL 595
            A     L  L L NN    ++       L  L   +L   +F  E        S    L
Sbjct: 196 -AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 596 GGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFG 655
             L + +  L+                    +     I   F  L  +    L + TI  
Sbjct: 255 CNLTIEEFRLAY------------------LDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 656 TLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLS 715
                ++    + + L   K                   L++    G        LP L 
Sbjct: 297 VKDFSYNFG-WQHLELVNCKFGQ-----FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE 350

Query: 716 YLLLANNYI--EGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPIS 773
           +L L+ N +  +G           ++ +DLS N +       L    L            
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD------FQ 404

Query: 774 SSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEI 833
            S                               MS +     L ++  +D+S        
Sbjct: 405 HS-------------------------NLKQ--MSEFSVFLSLRNLIYLDISHTHTRVAF 437

Query: 834 PTQIGYLTRIRALNLSHNNLTGTI-PTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLA 892
                 L+ +  L ++ N+      P  F+ L+ +  LDLS   L    P     L++L 
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497

Query: 893 VFRVANNNLSGKIPD 907
           V  +++NN       
Sbjct: 498 VLNMSHNNFFSLDTF 512

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  173 bits (441), Expect = 1e-45
 Identities = 90/494 (18%), Positives = 151/494 (30%), Gaps = 79/494 (15%)

Query: 427 VDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGH 486
                LN   K P+ L     + K L L+ N L         S  +L  LD+S    +  
Sbjct: 12  YQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 487 IPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFS 546
                 + LS L  L L+ N        +F+ +  L+ L      L       +     +
Sbjct: 68  EDGAYQS-LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG-HLKT 125

Query: 547 LEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNKFIGEIPKSLSKC----YLLGGLYLS 601
           L+ L +++N +Q     + F NLTNL  L L  NK        L        L   L LS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 602 DNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQ-LDYLKILDLSNNTIFGTLPSC 660
            N ++   P     +  L  + + NN     +     Q L  L++  L            
Sbjct: 186 LNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE---- 240

Query: 661 FSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCL---HGSIPTWIDRLPQLSYL 717
                          +E   +S +     L   +     L      I    + L  +S  
Sbjct: 241 -------------GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

Query: 718 LLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVN-TALNEGYHEAVAPISSSS 776
            L +  IE             + ++L +          L +   L    ++     S   
Sbjct: 288 SLVSVTIERVKDFS--YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 345

Query: 777 DDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLT--GEIP 834
                                                  L S+  +DLS N L+  G   
Sbjct: 346 ---------------------------------------LPSLEFLDLSRNGLSFKGCCS 366

Query: 835 TQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIV-LNTLAV 893
                 T ++ L+LS N +  T+ + F  L+Q+E LD  ++ L       + + L  L  
Sbjct: 367 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 894 FRVANNNLSGKIPD 907
             +++ +       
Sbjct: 426 LDISHTHTRVAFNG 439

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 97.4 bits (243), Expect = 6e-21
 Identities = 47/234 (20%), Positives = 78/234 (33%), Gaps = 39/234 (16%)

Query: 91  NRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNS 150
           N  S +   +        L+ LDLS+N +     N        L  L+ L    +     
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-----FLGLEQLEHLDFQHSNLKQM 411

Query: 151 I-FSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLS 209
             FS    L +L  L ++      + +    + LS+LE L M+ N+     +P   +  +
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLP---DIFT 467

Query: 210 TLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFV 269
            L NL FL L          ++   LSSL++L+++ N F                     
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-------------TFP- 513

Query: 270 DLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG 323
                             L++L+ LD + N I      +       L  L L  
Sbjct: 514 ---------------YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 76.2 bits (188), Expect = 3e-14
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 1/92 (1%)

Query: 816 LMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 875
           L +++ +DLS  +L    PT    L+ ++ LN+SHNN        +  L  ++ LD S N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528

Query: 876 LLLGKIPPQL-IVLNTLAVFRVANNNLSGKIP 906
            ++     +L    ++LA   +  N+ +    
Sbjct: 529 HIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 71.2 bits (175), Expect = 1e-12
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 816 LMSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSY 874
           L S+  + ++ N         I   L  +  L+LS   L    PT F++L  ++ L++S+
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503

Query: 875 NLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTF-EEDSYEGNPFLCGLPLS 932
           N            LN+L V   + N++       +  F +     +   N F C     
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 562

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  216 bits (551), Expect = 6e-60
 Identities = 90/583 (15%), Positives = 180/583 (30%), Gaps = 63/583 (10%)

Query: 208 LSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPS 267
           L++   +  L L+    +  +  ++G L+ L +L+L  +    +  + G +  S      
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 268 FVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNL----VVPKDYRCLRKLNTLYLGG 323
               + +        T +D     +  D+  + IN+      + K  R   K   +    
Sbjct: 137 QKQKMRMHY----QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS 192

Query: 324 IAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLL 383
               + + V +++  L  L+  Y+  + F       E     N E     K+        
Sbjct: 193 N---NITFVSKAVMRLTKLRQFYMGNSPFVAEN-ICEAWENENSEYAQQYKT------ED 242

Query: 384 QSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWL- 442
               +   L  + +  C         +    P FL    +++ ++++             
Sbjct: 243 LKWDNLKDLTDVEVYNC--------PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD 294

Query: 443 ------VENNTNLKTLLLANNSLF-GSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYL 495
                       ++ + +  N+L        +   +KL  L+   N   G +P   G+  
Sbjct: 295 WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS-E 352

Query: 496 SGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIG-CFSLEILALSN 554
             L  LNL+ N       +     + +++L  ++N+L   IP+         +  +  S 
Sbjct: 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSY 411

Query: 555 NNLQG-------HIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSG 607
           N +          +    F   N+  + L  N+      +  S    L  + L  N L+ 
Sbjct: 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471

Query: 608 -------KIPRWLGNLSALEDIIMPNNNLEG-PIPIEFCQLDYLKILDLSNNTI------ 653
                         N   L  I +  N L           L YL  +DLS N+       
Sbjct: 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ 531

Query: 654 FGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQ 713
                +        +     N+        I   P L  L +  N +   +   I   P 
Sbjct: 532 PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPN 588

Query: 714 LSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCL 756
           +S L + +N         +C   E  +  L ++     I  C 
Sbjct: 589 ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ-DIRGCD 630

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  210 bits (536), Expect = 8e-58
 Identities = 78/558 (13%), Positives = 174/558 (31%), Gaps = 85/558 (15%)

Query: 385 SIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVE 444
           S+ S   +  LS+ G    G          P  +    +L+ + L           +  +
Sbjct: 76  SLNSNGRVTGLSLEGFGASG--------RVPDAIGQLTELEVLALGSHGEKVNERLFGPK 127

Query: 445 ---NNTNLKTLLLANNSLFGSF--RMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLM 499
               N + +           +F    P      L    ++++  +  I       L    
Sbjct: 128 GISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK-DT 186

Query: 500 DLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQG 559
            +    N     +  +   +  L+   +  +    E        C + E           
Sbjct: 187 QIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENI------CEAWENENSEYAQQYK 239

Query: 560 HIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHL--------SGKIPR 611
               K  NL +L  +++     + ++P  L     +  + ++ N            +   
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA 299

Query: 612 WLGNLSALEDIIMPNNNL-EGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIH 670
                  ++ I +  NNL   P+     ++  L +L+   N + G LP+  S   +  ++
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLN 359

Query: 671 LSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTW--IDRLPQLSYLLLANNYIEG-- 726
           L+ N+I     +   ++  +  L  ++N L   IP       +  +S +  + N I    
Sbjct: 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVD 418

Query: 727 -----EIPIQICQLKEVRLIDLSHNNLSGHIPPCLVN----TALNEGYHEAVAPISSSSD 777
                 +     +   V  I+LS+N +S             +++N         +  +  
Sbjct: 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN---------LMGNM- 468

Query: 778 DASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQI 837
                 L  +  N      E                     ++ IDL  NKLT  +    
Sbjct: 469 ------LTEIPKNSLKDENENFKN--------------TYLLTSIDLRFNKLTK-LSDDF 507

Query: 838 GY--LTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL------LLGKIPPQLIVLN 889
               L  +  ++LS+N+ +   PT   N   ++   +           L + P  + +  
Sbjct: 508 RATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566

Query: 890 TLAVFRVANNNLSGKIPD 907
           +L   ++ +N++   + +
Sbjct: 567 SLTQLQIGSNDIRK-VNE 583

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  207 bits (529), Expect = 6e-57
 Identities = 93/646 (14%), Positives = 195/646 (30%), Gaps = 131/646 (20%)

Query: 108 QLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYF----NNSIFSSLGGLSSLRI 163
           ++  L L     +G V +     + +L  L+ L L S+             +    S   
Sbjct: 82  RVTGLSLEGFGASGRVPDA----IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137

Query: 164 LSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLS-NLKFLRLDYN 222
                     +     +D     +  D+  + I++    + +++ S ++     +    N
Sbjct: 138 KQKMRMHYQKTF----VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN 193

Query: 223 SFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGIN 282
           +  + +  ++  L+ LR   + ++ F      +  +  +             +      +
Sbjct: 194 NI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS----------EYAQQYKTED 242

Query: 283 TGLDSLSNLEELDMTNNAINNL-VVPKDYRCLRKLNTLYL------GGIAMIDGSKVLQS 335
              D+L +L ++++ N    NL  +P   + L ++  + +       G  + D  + L  
Sbjct: 243 LKWDNLKDLTDVEVYNC--PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALAD 300

Query: 336 IGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYL 395
                 ++ +Y+ + N K   V   L     L  L     +   +QL   + +F S    
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML-----ECLYNQLEGKLPAFGSEI-- 353

Query: 396 SIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLA 455
                                       L +++L++  ++   P         ++ L  A
Sbjct: 354 ---------------------------KLASLNLAYNQITE-IPANFCGFTEQVENLSFA 385

Query: 456 NNSLFG-SFRMPIHSHQKLATLDVSTNFFRG-------HIPVEIGTYLSGLMDLNLSRNA 507
           +N L          S   ++ +D S N            +          +  +NLS N 
Sbjct: 386 HNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK-GINVSSINLSNNQ 444

Query: 508 FNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFN 567
            +      F+    L S+++  N LT                L   N N +        N
Sbjct: 445 ISKFPKELFSTGSPLSSINLMGNMLTE----------IPKNSLKDENENFK--------N 486

Query: 568 LTNLMRLQLDGNKFIGEIPKSLSKCYL--LGGLYLSDNHLSGKIPRWLGNLSALEDIIMP 625
              L  + L  NK + ++        L  L G+ LS N  S   P    N S L+   + 
Sbjct: 487 TYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544

Query: 626 N------NNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGR 679
           N      N      P        L  L + +N I   +    +P                
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITP---------------- 587

Query: 680 LESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIE 725
                     +  LD+  N       +++    +    +L  +  +
Sbjct: 588 ---------NISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  202 bits (515), Expect = 4e-55
 Identities = 98/668 (14%), Positives = 189/668 (28%), Gaps = 140/668 (20%)

Query: 61  SDCCQWER---VECNKTTGRVIKLDLGDIKNRKNRKSERHLNASL---FTPFQQLESLDL 114
            +   W     V  N   GRV  L L               +  +        +LE L L
Sbjct: 64  KELDMWGAQPGVSLNSN-GRVTGLSL----------EGFGASGRVPDAIGQLTELEVLAL 112

Query: 115 SWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGS 174
             +         G + +S   + +       ++  +            ++    N     
Sbjct: 113 GSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQ 172

Query: 175 IDIKGLDSLS-NLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLG 233
             IK    ++    ++    N I                             + +  ++ 
Sbjct: 173 KSIKKSSRITLKDTQIGQLSNNI-----------------------------TFVSKAVM 203

Query: 234 GLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEE 293
            L+ LR   + ++ F      +  +  +             +      +   D+L +L +
Sbjct: 204 RLTKLRQFYMGNSPFVAENICEAWENENS----------EYAQQYKTEDLKWDNLKDLTD 253

Query: 294 LDMTNNAINNL-VVPKDYRCLRKLNTLYL------GGIAMIDGSKVLQSIGSLPSLKTLY 346
           +++ N    NL  +P   + L ++  + +       G  + D  + L        ++ +Y
Sbjct: 254 VEVYNC--PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311

Query: 347 LLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGAL 406
           + + N K   V   L     L  L     +   +QL   + +F S               
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGML-----ECLYNQLEGKLPAFGSEI------------- 353

Query: 407 HGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFG-SFRM 465
                            L +++L++  ++   P         ++ L  A+N L       
Sbjct: 354 ----------------KLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIF 396

Query: 466 PIHSHQKLATLDVSTNFFRG-------HIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFAD 518
              S   ++ +D S N            +          +  +NLS N  +      F+ 
Sbjct: 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK-GINVSSINLSNNQISKFPKELFST 455

Query: 519 MKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDG 578
              L S+++  N LT                L   N N +        N   L  + L  
Sbjct: 456 GSPLSSINLMGNMLTE----------IPKNSLKDENENFK--------NTYLLTSIDLRF 497

Query: 579 NKFIGEIPKSLSKCYL--LGGLYLSDNHLSGKIPRWLGNLSALEDIIMPN------NNLE 630
           NK + ++        L  L G+ LS N  S   P    N S L+   + N      N   
Sbjct: 498 NK-LTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTL 555

Query: 631 GPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYL 690
              P        L  L + +N I   +    +P  I  + +  N       S +      
Sbjct: 556 REWPEGITLCPSLTQLQIGSNDI-RKVNEKITP-NISVLDIKDNPNISIDLSYVCPYIEA 613

Query: 691 MTLDLSYN 698
               L Y+
Sbjct: 614 GMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  152 bits (386), Expect = 2e-38
 Identities = 57/417 (13%), Positives = 122/417 (29%), Gaps = 92/417 (22%)

Query: 500 DLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFS-LEILALSNNNLQ 558
           + N   + +      S      +  L +     +G +PD  AIG  + LE+LAL ++  +
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD--AIGQLTELEVLALGSHGEK 118

Query: 559 G----HIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYL--LGGLYLSDNHLSGKIPRW 612
                          +  + Q     +         +     L    ++ +     I + 
Sbjct: 119 VNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178

Query: 613 LGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLS 672
                    I   +NN+   +     +L  L+   + N+                     
Sbjct: 179 SRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENIC------------- 224

Query: 673 KNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQI 732
                                +  Y   + +     D L  L+ + + N     ++P  +
Sbjct: 225 ---------------EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269

Query: 733 CQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGS 792
             L E++LI+++ N                                        +  +  
Sbjct: 270 KALPEMQLINVACNRGIS---------------------------------GEQLKDDWQ 296

Query: 793 PIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKL-TGEIPTQIGYLTRIRALNLSHN 851
            + +                  +   +  I +  N L T  + T +  + ++  L   +N
Sbjct: 297 ALADAP----------------VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340

Query: 852 NLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLI-VLNTLAVFRVANNNLSGKIPD 907
            L G +P  F +  ++ SL+L+YN  + +IP         +     A+N L   IP+
Sbjct: 341 QLEGKLP-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKY-IPN 394

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 83.2 bits (206), Expect = 2e-16
 Identities = 22/235 (9%), Positives = 54/235 (22%), Gaps = 34/235 (14%)

Query: 699 CLHGSIP-TWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLV 757
            + G+ P   ++   +++ L L      G +P  I QL E+ ++ L  +    +      
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 758 NTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILM 817
                         +S                +  P                        
Sbjct: 127 KGISAN--------MSDEQKQKMRMHYQKTFVDYDP-------------------REDFS 159

Query: 818 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 877
            +    ++ +     I        +   +    NN+T  +      L ++    +  +  
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPF 218

Query: 878 LGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLS 932
           + +   +                       +        +      P L  LP  
Sbjct: 219 VAENICEAWENENS-----EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF 268

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.8 bits (161), Expect = 5e-11
 Identities = 11/89 (12%), Positives = 26/89 (29%), Gaps = 3/89 (3%)

Query: 814 RILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLS 873
           +     +  D   N+   E P  I     +  L +  N++         N+     LD+ 
Sbjct: 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLDIK 595

Query: 874 YNLLLGKIPPQLIVLNTLAVFRVANNNLS 902
            N  +      +       ++ +  +   
Sbjct: 596 DNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.0 bits (151), Expect = 7e-10
 Identities = 16/119 (13%), Positives = 34/119 (28%), Gaps = 6/119 (5%)

Query: 823 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLG--- 879
           +   +    +    +    R+  L+L     +G +P     L ++E L L  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 880 -KIPPQLIVLNTLAVFRVANNNLSGKIPDRVA--QFSTFEEDSYEGNPFLCGLPLSKSC 935
              P  +    +    +    +      D      FS   +D    +P    +  S   
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  214 bits (548), Expect = 1e-59
 Identities = 107/578 (18%), Positives = 189/578 (32%), Gaps = 58/578 (10%)

Query: 183 LSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILS 242
            ++ E L+ S+N +  +         S L NL FL L           +      L  L 
Sbjct: 32  PNSTECLEFSFNVLPTI--QNTT--FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLV 87

Query: 243 LADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAIN 302
           L  N      +                             T L     L+ L      I+
Sbjct: 88  LTANPLIFMAE-----------------------------TALSGPKALKHLFFIQTGIS 118

Query: 303 NLVVPKDYRCLRKLNTLYLGG--IAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQE 360
           ++         + L +LYLG   I+ I     L        LK L          +  ++
Sbjct: 119 SID-FIPLHNQKTLESLYLGSNHISSIK----LPKGFPTEKLKVLDFQNNAIH-YLSKED 172

Query: 361 LHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYH 420
           + +      L L  +   ++ +          + L+  G      +      +       
Sbjct: 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNS------T 226

Query: 421 QHDLKNVDLSHLNLSGKFPNWLVEN-NTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVS 479
              L       ++     P         +++++ L  +  F       H    L  LD++
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286

Query: 480 TNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDR 539
                  +P  +   LS L  L LS N F      S ++   L  L I  N    E+   
Sbjct: 287 ATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

Query: 540 MAIGCFSLEILALSNNNLQGHIFSKK--FNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGG 597
                 +L  L LS+++++          NL++L  L L  N+ +    ++  +C  L  
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404

Query: 598 LYLSDNHLSGKIPR-WLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGT 656
           L L+   L  K  +    NL  L+ + + ++ L+      F  L  L+ L+L  N     
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464

Query: 657 LPSCFSP----AYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLP 712
                +       +E + LS   +    +        +  +DLS+N L  S    +  L 
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524

Query: 713 QLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSG 750
            + YL LA+N+I   +P  +  L + R I+L  N L  
Sbjct: 525 GI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  214 bits (546), Expect = 2e-59
 Identities = 123/624 (19%), Positives = 212/624 (33%), Gaps = 59/624 (9%)

Query: 134 LNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSY 193
            N+ + L    N       ++   L +L  L L   ++   I      S   L+ L ++ 
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTA 90

Query: 194 NAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSID 253
           N +  +   +    LS    LK L       +S  F  L    +L  L L  N  +    
Sbjct: 91  NPLIFM--AETA--LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS--- 143

Query: 254 IKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCL 313
                    +++P                        L+ LD  NNAI+ L   +D   L
Sbjct: 144 ---------IKLPKG-----------------FPTEKLKVLDFQNNAIHYLS-KEDMSSL 176

Query: 314 RKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQ-ELHNFTNLEELLL 372
           ++   L L  +   D + +          ++L    T     I    +     +L     
Sbjct: 177 QQATNLSLN-LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTF 235

Query: 373 VKSDLHVSQLLQSIASFTSLKYLSIRGCVLKG-ALHGQDGGTFPKFLYHQHDLKNVDLSH 431
              D+    +  ++  F  L  +S+    L+          TF  F      L+ +DL+ 
Sbjct: 236 --EDMDDEDISPAV--FEGLCEMSVESINLQKHYFFNISSNTFHCF----SGLQELDLTA 287

Query: 432 LNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEI 491
            +LS + P+ L    + LK L+L+ N      ++   +   L  L +  N  R  +    
Sbjct: 288 THLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345

Query: 492 GTYLSGLMDLNLSRNAFNGS--IPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEI 549
              L  L +L+LS +    S        ++  L+SL++SYN+      +     C  LE+
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLEL 404

Query: 550 LALSNNNLQGHIFSKKF-NLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGK 608
           L L+   L+       F NL  L  L L  +       +       L  L L  NH    
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464

Query: 609 I---PRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAY 665
                  L  L  LE +++   +L       F  L  +  +DLS+N +  +     S   
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524

Query: 666 IEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIE 725
              ++L+ N I   L S++       T++L  N L  +       +  L +       +E
Sbjct: 525 GIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN----IYFLEWYKENMQKLE 580

Query: 726 GEIPIQICQLKEVRLIDLSHNNLS 749
                       +R + LS   LS
Sbjct: 581 DTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  187 bits (478), Expect = 2e-50
 Identities = 120/591 (20%), Positives = 212/591 (35%), Gaps = 67/591 (11%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSL 155
             ++   F    +L++L L+ N +    E      LS    LK L       ++  F  L
Sbjct: 70  YWIHEDTFQSQHRLDTLVLTANPLIFMAETA----LSGPKALKHLFFIQTGISSIDFIPL 125

Query: 156 GGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLK 215
               +L  L L  N ++ SI +        L+ LD   NAI  L   + +  L   +NL 
Sbjct: 126 HNQKTLESLYLGSNHIS-SIKLPKGFPTEKLKVLDFQNNAIHYL-SKEDMSSLQQATNLS 183

Query: 216 FLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSI--LRVPSFVDLVS 273
            L L+ N   + I       +  + L+    +    I  KG + S+I  L + +F D+  
Sbjct: 184 -LNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVI-FKGLKNSTIQSLWLGTFEDM-D 239

Query: 274 LSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVL 333
               S  +  GL    ++E +++  +   N+     + C   L  L L    +   S++ 
Sbjct: 240 DEDISPAVFEGL-CEMSVESINLQKHYFFNI-SSNTFHCFSGLQELDLTATHL---SELP 294

Query: 334 QSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLK 393
             +  L +LK L L    F+  +      NF +L  L +  +   +      + +  +L+
Sbjct: 295 SGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353

Query: 394 YLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSH--LNLSGKFPNWLVENNTNLKT 451
            L                                DLSH  +  S      L  N ++L++
Sbjct: 354 EL--------------------------------DLSHDDIETSDCCNLQL-RNLSHLQS 380

Query: 452 LLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGS 511
           L L+ N              +L  LD++    +          L  L  LNLS +  + S
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440

Query: 512 IPSSFADMKMLKSLDISYNQLTGEIPDRMAI--GCFSLEILALSNNNLQG---HIFSKKF 566
               F  +  L+ L++  N        +         LEIL LS  +L     H F+   
Sbjct: 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT--- 497

Query: 567 NLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPN 626
           +L  +  + L  N+      ++LS    +  L L+ NH+S  +P  L  LS    I +  
Sbjct: 498 SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQ 556

Query: 627 NNLEGPIPIEFCQLDYLKILDLSNNTIFG-TLPSCFSPAYIEEIHLSKNKI 676
           N L+         + +L+    +   +       C +P  +  + LS   +
Sbjct: 557 NPLDCTCSN----IYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  176 bits (449), Expect = 1e-46
 Identities = 80/505 (15%), Positives = 150/505 (29%), Gaps = 50/505 (9%)

Query: 419 YHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDV 478
             +   K  +  +L L+ + P  L     + + L  + N L             L  LD+
Sbjct: 9   IEKEVNKTYNCENLGLN-EIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDL 64

Query: 479 STNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPD 538
           +       I  +       L  L L+ N       ++ +  K LK L      ++  I  
Sbjct: 65  TRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDF 122

Query: 539 RMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGL 598
                  +LE L L +N++      K F    L  L    N       + +S       L
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182

Query: 599 YLSDNHLS-GKIPRWLGNLSALEDIIMPNNNLEGPIP--IEFCQLDYLKILDLSNNTIFG 655
            L+ N      I     + +  + +          I   ++   +  L +    +     
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 656 TLPSCFSPAY---IEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLP 712
             P+ F       +E I+L K+       +  H    L  LDL+   L   +P+ +  L 
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLS 301

Query: 713 QLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPI 772
            L  L+L+ N  E    I       +  + +  N                          
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT------------------------K 337

Query: 773 SSSSDDASTYVLPSVAP---NGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKL 829
                      L ++     +   I   +      +N+S          +  ++LS N+ 
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS---------HLQSLNLSYNEP 388

Query: 830 TGEIPTQIGYLTRIRALNLSHNNLTGTIP-TTFSNLKQIESLDLSYNLLLGKIPPQLIVL 888
                       ++  L+L+   L      + F NL  ++ L+LS++LL          L
Sbjct: 389 LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448

Query: 889 NTLAVFRVANNNLSGKIPDRVAQFS 913
             L    +  N+       +     
Sbjct: 449 PALQHLNLQGNHFPKGNIQKTNSLQ 473

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  125 bits (315), Expect = 9e-30
 Identities = 78/447 (17%), Positives = 144/447 (32%), Gaps = 100/447 (22%)

Query: 91  NRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNS 150
            +           +  Q L        +      +  V       +++ + L  +YF N 
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDED--ISPAVFEGLCEMSVESINLQKHYFFNI 269

Query: 151 IFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLST 210
             ++    S L+ L L    L+  +   GL  LS L++L +S N  +NL   Q     S 
Sbjct: 270 SSNTFHCFSGLQELDLTATHLS-ELP-SGLVGLSTLKKLVLSANKFENL--CQIS--ASN 323

Query: 211 LSNLKFLRLDYNSFNSSIFS-SLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFV 269
             +L  L +  N+    + +  L  L +LR L L+ +    S                  
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL------------- 370

Query: 270 DLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDG 329
                          L +LS+L+ L+++ N   +L                         
Sbjct: 371 --------------QLRNLSHLQSLNLSYNEPLSLKT----------------------- 393

Query: 330 SKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASF 389
               ++    P L+ L L FT  K         N   L+ L L  S L +S   Q     
Sbjct: 394 ----EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS-EQLFDGL 448

Query: 390 TSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSG--KFPNWLVENNT 447
            +L++L                                +L   +           ++   
Sbjct: 449 PALQHL--------------------------------NLQGNHFPKGNIQKTNSLQTLG 476

Query: 448 NLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNA 507
            L+ L+L+   L    +    S + +  +D+S N       +E  ++L G+  LNL+ N 
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT-SSSIEALSHLKGIY-LNLASNH 534

Query: 508 FNGSIPSSFADMKMLKSLDISYNQLTG 534
            +  +PS    +   +++++  N L  
Sbjct: 535 ISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 92.0 bits (229), Expect = 3e-19
 Identities = 41/223 (18%), Positives = 80/223 (35%), Gaps = 18/223 (8%)

Query: 81  LDLGDIKNRKNRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFL 140
           LDL       +                 L+SL+LS+N     ++ E          L+ L
Sbjct: 355 LDLSH-----DDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKTEA---FKECPQLELL 405

Query: 141 LLDSNYFNNSI-FSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNL 199
            L           S    L  L++L+L+ + L+     +  D L  L+ L++  N     
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD-ISSEQLFDGLPALQHLNLQGNHFPKG 464

Query: 200 VVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQA 259
              Q    L TL  L+ L L +   +S    +   L  +  + L+ NR      +     
Sbjct: 465 -NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR------LTSSSI 517

Query: 260 SSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAIN 302
            ++  +      ++ +  S+ + + L  LS    +++  N ++
Sbjct: 518 EALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.1 bits (154), Expect = 3e-10
 Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 4/108 (3%)

Query: 823 DLSCNKLTGEIPTQIG---YLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLG 879
           +L  N        +      L R+  L LS  +L+      F++LK +  +DLS+N L  
Sbjct: 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514

Query: 880 KIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 927
               + +         +A+N++S  +P  +   S     +   NP  C
Sbjct: 515 -SSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.5 bits (142), Expect = 7e-09
 Identities = 13/118 (11%), Positives = 36/118 (30%), Gaps = 1/118 (0%)

Query: 816 LMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 875
             ++  +      ++      +     + +L L  N+++          ++++ LD   N
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163

Query: 876 LLLGKIPPQLIVLNTLAVFRVA-NNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLS 932
            +       +  L       +  N N    I       + F+  ++ G   L  +   
Sbjct: 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKG 221

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.8 bits (135), Expect = 6e-08
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 4/90 (4%)

Query: 822 IDLSCNKLTG-EIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGK 880
           +DL+  +L   +  +    L  ++ LNLSH+ L  +    F  L  ++ L+L  N     
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464

Query: 881 I---PPQLIVLNTLAVFRVANNNLSGKIPD 907
                  L  L  L +  ++  +LS     
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 816 LMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 875
           L  M+ +DLS N+LT      + +L  I  LNL+ N+++  +P+    L Q  +++L  N
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQN 557

Query: 876 LL 877
            L
Sbjct: 558 PL 559

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  198 bits (507), Expect = 4e-57
 Identities = 78/307 (25%), Positives = 125/307 (40%), Gaps = 36/307 (11%)

Query: 456 NNSLFGSFRMPIHSHQKLATLDVSTNFFRG--HIPVEIGTYLSGLMDLNLS-RNAFNGSI 512
           N +  G          ++  LD+S         IP  +   L  L  L +   N   G I
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPI 93

Query: 513 PSSFADMKMLKSLDISYNQLTGEIPDRMAIG-CFSLEILALSNNNLQGHIFSKKFNLTNL 571
           P + A +  L  L I++  ++G IPD   +    +L  L  S N L G +     +L NL
Sbjct: 94  PPAIAKLTQLHYLYITHTNVSGAIPD--FLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151

Query: 572 MRLQLDGNKFIGEIPKSLSKC-YLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLE 630
           + +  DGN+  G IP S      L   + +S N L+GKIP    NL+ L  + +  N LE
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210

Query: 631 GPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYL 690
           G   + F      + + L+ N++   L                    G  ++       L
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKV-----------------GLSKN-------L 246

Query: 691 MTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNL-- 748
             LDL  N ++G++P  + +L  L  L ++ N + GEIP Q   L+   +   ++N    
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLC 305

Query: 749 SGHIPPC 755
              +P C
Sbjct: 306 GSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  195 bits (498), Expect = 6e-56
 Identities = 75/366 (20%), Positives = 123/366 (33%), Gaps = 80/366 (21%)

Query: 584 EIPKSLSKCYLL----GGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEG--PIPIEF 637
           +I K L     L          +    G +         + ++ +   NL    PIP   
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 638 CQLDYLKILDLSN-NTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLS 696
             L YL  L +   N + G +P                    +L         L  L ++
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAI----------------AKL-------TQLHYLYIT 109

Query: 697 YNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCL 756
           +  + G+IP ++ ++  L  L  + N + G +P  I  L  +  I    N +SG IP   
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

Query: 757 VN-TALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSY-YYQGR 814
            + + L                                             +S     G+
Sbjct: 170 GSFSKLFTSM----------------------------------------TISRNRLTGK 189

Query: 815 ILMSMSGIDL-----SCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIES 869
           I  + + ++L     S N L G+     G     + ++L+ N+L   +       K +  
Sbjct: 190 IPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNG 248

Query: 870 LDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGL 929
           LDL  N + G +P  L  L  L    V+ NNL G+IP        F+  +Y  N  LCG 
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307

Query: 930 PLSKSC 935
           PL  +C
Sbjct: 308 PL-PAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  184 bits (469), Expect = 6e-52
 Identities = 61/258 (23%), Positives = 103/258 (39%), Gaps = 14/258 (5%)

Query: 511 SIPSSFADMKMLKS----LDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQG--HIFSK 564
            I     +   L S     D       G + D      + +  L LS  NL     I S 
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSS 71

Query: 565 KFNLTNLMRLQL-DGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDII 623
             NL  L  L +   N  +G IP +++K   L  LY++  ++SG IP +L  +  L  + 
Sbjct: 72  LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 624 MPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFS--PAYIEEIHLSKNKIEGRL- 680
              N L G +P     L  L  +    N I G +P  +         + +S+N++ G++ 
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

Query: 681 ESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRL 740
            +  + +  L  +DLS N L G              + LA N +  ++  ++   K +  
Sbjct: 192 PTFANLN--LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNG 248

Query: 741 IDLSHNNLSGHIPPCLVN 758
           +DL +N + G +P  L  
Sbjct: 249 LDLRNNRIYGTLPQGLTQ 266

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  178 bits (455), Expect = 4e-50
 Identities = 69/268 (25%), Positives = 116/268 (43%), Gaps = 9/268 (3%)

Query: 412 GTFPKFLYHQHDLKNVDLSHLNLSGKFP-NWLVENNTNLKTLLLAN-NSLFGSFRMPIHS 469
           G         + + N+DLS LNL   +P    + N   L  L +   N+L G     I  
Sbjct: 40  GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99

Query: 470 HQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISY 529
             +L  L ++     G IP  +   +  L+ L+ S NA +G++P S + +  L  +    
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158

Query: 530 NQLTGEIPDRMAIGCFS--LEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPK 587
           N+++G IPD  + G FS     + +S N L G I     NL NL  + L  N   G+   
Sbjct: 159 NRISGAIPD--SYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASV 215

Query: 588 SLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILD 647
                     ++L+ N L+  + + +G    L  + + NN + G +P    QL +L  L+
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274

Query: 648 LSNNTIFGTLPSCFSPAYIEEIHLSKNK 675
           +S N + G +P   +    +    + NK
Sbjct: 275 VSFNNLCGEIPQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  165 bits (419), Expect = 3e-45
 Identities = 73/283 (25%), Positives = 120/283 (42%), Gaps = 19/283 (6%)

Query: 360 ELHNFTNLEELLLVKSDLHVSQLL-QSIASFTSLKYLSIRGCVLKGALHGQDG--GTFPK 416
                  +  L L   +L     +  S+A+   L +L          + G +   G  P 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLY---------IGGINNLVGPIPP 95

Query: 417 FLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATL 476
            +     L  + ++H N+SG  P++L      L TL  + N+L G+    I S   L  +
Sbjct: 96  AIAKLTQLHYLYITHTNVSGAIPDFL-SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 477 DVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEI 536
               N   G IP   G++      + +SRN   G IP +FA++  L  +D+S N L G+ 
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDA 213

Query: 537 PDRMAIG-CFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLL 595
              +  G   + + + L+ N+L   +  K     NL  L L  N+  G +P+ L++   L
Sbjct: 214 S--VLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

Query: 596 GGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFC 638
             L +S N+L G+IP+  GNL   +     NN      P+  C
Sbjct: 271 HSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  163 bits (415), Expect = 9e-45
 Identities = 78/323 (24%), Positives = 127/323 (39%), Gaps = 69/323 (21%)

Query: 579 NKFIGEIPKSLSKCYLLGGLYLSDNHLSG--KIPRWLGNLSALEDIIMPN-NNLEGPIPI 635
             ++G +  + ++ Y +  L LS  +L     IP  L NL  L  + +   NNL GPIP 
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 636 EFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDL 695
              +L  L  L +++  + G +P                    ++++       L+TLD 
Sbjct: 96  AIAKLTQLHYLYITHTNVSGAIPDFL----------------SQIKT-------LVTLDF 132

Query: 696 SYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKE-VRLIDLSHNNLSGHIPP 754
           SYN L G++P  I  LP L  +    N I G IP       +    + +S N L+G IPP
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192

Query: 755 CLVNTALN---------EGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTK 805
              N  L          EG        S                     G ++  Q    
Sbjct: 193 TFANLNLAFVDLSRNMLEG------DASVL------------------FGSDKNTQKI-- 226

Query: 806 NMSY-YYQGRI-----LMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPT 859
           +++       +       +++G+DL  N++ G +P  +  L  + +LN+S NNL G IP 
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 860 TFSNLKQIESLDLSYNLLLGKIP 882
              NL++ +    + N  L   P
Sbjct: 287 G-GNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  128 bits (323), Expect = 1e-32
 Identities = 74/304 (24%), Positives = 115/304 (37%), Gaps = 32/304 (10%)

Query: 267 SFVDLVSLSSWSVGIN-----------TGLDSLSNLEELDMTNNAIN-NLVVPKDYRCLR 314
              +  +LSSW    +                   +  LD++   +     +P     L 
Sbjct: 17  DLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP 76

Query: 315 KLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVK 374
            LN LY+GGI  + G  +  +I  L  L  LY+  TN  G I    L     L  L    
Sbjct: 77  YLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAI-PDFLSQIKTLVTLDFSY 134

Query: 375 SDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNV-DLSHLN 433
           + L    L  SI+S  +L  ++  G  + G          P        L     +S   
Sbjct: 135 NALS-GTLPPSISSLPNLVGITFDGNRISG--------AIPDSYGSFSKLFTSMTISRNR 185

Query: 434 LSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGT 493
           L+GK P      N NL  + L+ N L G   +   S +    + ++ N     +  ++G 
Sbjct: 186 LTGKIPPTF--ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGL 242

Query: 494 YLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFS-LEILAL 552
               L  L+L  N   G++P     +K L SL++S+N L GEIP     G     ++ A 
Sbjct: 243 -SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP---QGGNLQRFDVSAY 298

Query: 553 SNNN 556
           +NN 
Sbjct: 299 ANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  122 bits (309), Expect = 9e-31
 Identities = 74/362 (20%), Positives = 120/362 (33%), Gaps = 76/362 (20%)

Query: 25  EGCLEQERSALLQLKHFFNDDQRLQNWVDAADDENYSDCCQ--WERVECNKTT--GRVIK 80
           E C  Q++ ALLQ+K    +   L +W+        +DCC   W  V C+  T   RV  
Sbjct: 1   ELCNPQDKQALLQIKKDLGNPTTLSSWLPT------TDCCNRTWLGVLCDTDTQTYRVNN 54

Query: 81  LDLGDIKNRKNRKSERHLNASLFTPFQQLESLDLS-WNNIAGCVENEGVERLSRLNNLKF 139
           LDL       N      + +SL      L  L +   NN+ G +       +++L  L +
Sbjct: 55  LDLSG----LNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPA----IAKLTQLHY 105

Query: 140 LLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNL 199
           L +     + +I   L  + +L  L  + N L+G++    + SL NL  +    N    +
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL-PPSISSLPNLVGITFDGN---RI 161

Query: 200 V--VPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGK 257
              +P      S L     + +  N     I  +   L +L  + L+ N   G       
Sbjct: 162 SGAIPDSYGSFSKLFT--SMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDAS---- 214

Query: 258 QASSILRVPSFVDLVSLSSWSVGIN--TG----LDSLSNLEELDMTNNAINNLVVPKDYR 311
                     F    +     +  N        +    NL  LD+ NN I          
Sbjct: 215 --------VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY--------- 257

Query: 312 CLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELL 371
                     G +         Q +  L  L +L + F N  G I   +  N    +   
Sbjct: 258 ----------GTLP--------QGLTQLKFLHSLNVSFNNLCGEI--PQGGNLQRFDVSA 297

Query: 372 LV 373
             
Sbjct: 298 YA 299

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  206 bits (526), Expect = 9e-57
 Identities = 118/627 (18%), Positives = 200/627 (31%), Gaps = 112/627 (17%)

Query: 135 NNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYN 194
           ++ K + L  N        S    S L+ L L+   +  +I+ K    L +L  L ++ N
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGN 90

Query: 195 AIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDI 254
            I +     G    S L++L+ L        S     +G L +L+ L++A N  +     
Sbjct: 91  PIQSF--SPGS--FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH----- 141

Query: 255 KGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLR 314
                                  S  +     +L+NL  +D++ N I  +    D + LR
Sbjct: 142 -----------------------SCKLPAYFSNLTNLVHVDLSYNYIQTIT-VNDLQFLR 177

Query: 315 KLN----TLYLGG--IAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLE 368
           +      +L +    I  I              L  L L        I+   L N   L 
Sbjct: 178 ENPQVNLSLDMSLNPIDFIQDQ-----AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLH 232

Query: 369 ELLLVKSDLHVSQLLQSIA--SFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKN 426
              L+  +    + L+         L  ++                           +  
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVT---------------------------IDE 265

Query: 427 VDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGH 486
             L++ N              N+  + LA  S+   +   +  H K  +L +     +  
Sbjct: 266 FRLTYTNDFSDDIVKF-HCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQF 322

Query: 487 IPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAI-GCF 545
             ++    L  L  L L+ N   GSI      +  L  LD+S N L+       +  G  
Sbjct: 323 PTLD----LPFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376

Query: 546 SLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNKFIGEIPKS-LSKCYLLGGLYLSDN 603
           SL  L LS N     I S  F  L  L  L    +        S       L  L +S  
Sbjct: 377 SLRHLDLSFNGA--IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434

Query: 604 HLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIE-FCQLDYLKILDLSNNTIFGTLPSCFS 662
           +           L++L  + M  N+ +       F     L  LDLS             
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC----------- 483

Query: 663 PAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANN 722
              +E+I             +      L  L++S+N L     +  ++L  LS L  + N
Sbjct: 484 --QLEQIS----------WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531

Query: 723 YIEGEIPIQICQLKEVRLIDLSHNNLS 749
            IE    I     K +   +L++N+++
Sbjct: 532 RIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  202 bits (517), Expect = 1e-55
 Identities = 110/566 (19%), Positives = 185/566 (32%), Gaps = 61/566 (10%)

Query: 106 FQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILS 165
               +++DLS+N +            S  + L++L L           +  GL  L  L 
Sbjct: 31  PSSTKNIDLSFNPLKILKSYS----FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI 86

Query: 166 LADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFN 225
           L  N +  S        L++LE L      + +L        +  L  LK L + +N  +
Sbjct: 87  LTGNPIQ-SFSPGSFSGLTSLENLVAVETKLASL--ESFP--IGQLITLKKLNVAHNFIH 141

Query: 226 S-SIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSV----- 279
           S  + +    L++L  + L+ N                + V     L      ++     
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYI------------QTITVNDLQFLRENPQVNLSLDMS 189

Query: 280 -----GINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKV-- 332
                 I         L EL +  N  ++ ++    + L  L+   L      D   +  
Sbjct: 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249

Query: 333 --LQSIGSLPSLKTLYL-LFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASF 389
                +  L  +      L      +    + H   N+  + L  + + +  L + +   
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL--AGVSIKYL-EDVPKH 306

Query: 390 TSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNL 449
              + LSI  C LK           P        LK++ L+    S  F         +L
Sbjct: 307 FKWQSLSIIRCQLKQ----FPTLDLPF-------LKSLTLTMNKGSISFKKV---ALPSL 352

Query: 450 KTLLLANNSLFGSFRMPIH--SHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNA 507
             L L+ N+L  S            L  LD+S N     I       L  L  L+   + 
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA--IIMSANFMGLEELQHLDFQHST 410

Query: 508 FNGSIP-SSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKF 566
                  S+F  ++ L  LDISY        D + +G  SL  L ++ N+ + +  S  F
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKI-DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469

Query: 567 -NLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMP 625
            N TNL  L L   +            + L  L +S N+L          L +L  +   
Sbjct: 470 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529

Query: 626 NNNLEGPIPIEFCQLDYLKILDLSNN 651
            N +E    I       L   +L+NN
Sbjct: 530 FNRIETSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  182 bits (464), Expect = 1e-48
 Identities = 98/584 (16%), Positives = 198/584 (33%), Gaps = 78/584 (13%)

Query: 340 PSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQ----SIASFTSLKYL 395
            S K + L F   K  + +    NF+ L+ L     DL   ++      +      L  L
Sbjct: 32  SSTKNIDLSFNPLK-ILKSYSFSNFSELQWL-----DLSRCEIETIEDKAWHGLHHLSNL 85

Query: 396 SIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLA 455
            + G  ++           P        L+N+      L+    ++ +     LK L +A
Sbjct: 86  ILTGNPIQS--------FSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLITLKKLNVA 136

Query: 456 NNSLFGSFRMPIHSH-QKLATLDVSTNFFRGHIPVEIGTYLSGL----MDLNLSRNAFNG 510
           +N +         S+   L  +D+S N+ +  I V    +L       + L++S N  + 
Sbjct: 137 HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ-TITVNDLQFLRENPQVNLSLDMSLNPIDF 195

Query: 511 SIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKF---- 566
               +F  +K L  L +  N  +  I          L +  L     +     + F    
Sbjct: 196 IQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254

Query: 567 --NLTNLMRLQLD--GNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDI 622
              L ++   +          +          +  + L+   +   +   +      + +
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLED-VPKHFKWQSL 312

Query: 623 IMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLES 682
            +    L+         L +LK L L+ N    +      P+ +  + LS+N +      
Sbjct: 313 SIIRCQLKQ---FPTLDLPFLKSLTLTMNKGSISFKKVALPS-LSYLDLSRNALSFSGCC 368

Query: 683 IIH--YSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQ-ICQLKEVR 739
                 +  L  LDLS+N     +      L +L +L   ++ ++          L+++ 
Sbjct: 369 SYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427

Query: 740 LIDLSHNNLSGHIPPCLVN-TALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEE 798
            +D+S+ N         +  T+LN         +  + +      L +V  N        
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNT--------LKMAGNSFKDNTLSNVFAN-------- 471

Query: 799 TVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIP 858
                              +++ +DLS  +L          L R++ LN+SHNNL     
Sbjct: 472 -----------------TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514

Query: 859 TTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLS 902
           + ++ L  + +LD S+N +            +LA F + NN+++
Sbjct: 515 SHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  145 bits (367), Expect = 2e-36
 Identities = 81/491 (16%), Positives = 154/491 (31%), Gaps = 46/491 (9%)

Query: 427 VDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGH 486
                  LS K P+ +    ++ K + L+ N L         +  +L  LD+S       
Sbjct: 16  YQCMDQKLS-KVPDDI---PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 487 IPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFS 546
                   L  L +L L+ N      P SF+ +  L++L     +L   +         +
Sbjct: 72  EDKAWHG-LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLIT 129

Query: 547 LEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNKFIGEIPKSLS----KCYLLGGLYLS 601
           L+ L +++N +        F NLTNL+ + L  N         L        +   L +S
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189

Query: 602 DNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQ-LDYLKILDLSNNTIFGTLPSC 660
            N +   I         L ++ +  N     I     Q L  L +  L            
Sbjct: 190 LNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN-- 246

Query: 661 FSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLA 720
                   + + +  I   L  +      +    L+Y             L  +S + LA
Sbjct: 247 --------LEIFEPSIMEGLCDV-----TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293

Query: 721 NNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVN-TALNEGYHEAVAPISSSSDDA 779
              I+      + +  + + + +    L       L    +L    ++     S S    
Sbjct: 294 GVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNK----GSISFKKV 347

Query: 780 STYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGY 839
           +   L  +  + + +       +               S+  +DLS N     +      
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSY---------SDLGTNSLRHLDLSFNGAI-IMSANFMG 397

Query: 840 LTRIRALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVAN 898
           L  ++ L+  H+ L        F +L+++  LD+SY           + L +L   ++A 
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457

Query: 899 NNLSGKIPDRV 909
           N+        V
Sbjct: 458 NSFKDNTLSNV 468

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  141 bits (358), Expect = 4e-35
 Identities = 73/502 (14%), Positives = 139/502 (27%), Gaps = 60/502 (11%)

Query: 423 DLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNF 482
             KN+DLS   L     ++   N + L+ L L+   +        H    L+ L ++ N 
Sbjct: 33  STKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 483 FRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAI 542
            +        + L+ L +L                 +  LK L++++N +          
Sbjct: 92  IQ-SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 543 GCFSLEILALSNNNLQG---HIFSKKFNLT-NLMRLQLDGNKFIGEIPKSLSKCYLLGGL 598
              +L  + LS N +Q    +            + L +  N  I  I     +   L  L
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN-PIDFIQDQAFQGIKLHEL 209

Query: 599 YLSDNHLSGKIPRW-LGNLSALEDIIMPNNNLEGPIPIEFCQLDYLK--------ILDLS 649
            L  N  S  I +  L NL+ L    +     +    +E  +   ++           L+
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269

Query: 650 NNTIFGTLPSCFSP-AYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWI 708
               F      F   A +  + L+   I+   +   H+     +L +    L        
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFK--WQSLSIIRCQLKQFPTLD- 326

Query: 709 DRLPQLSYLLLANNYIEGEIPIQIC-QLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHE 767
             LP L  L L  N             L  + L   + +         L   +L      
Sbjct: 327 --LPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL- 383

Query: 768 AVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCN 827
                          ++ +                             L  +  +D   +
Sbjct: 384 ---------SFNGAIIMSANFMG-------------------------LEELQHLDFQHS 409

Query: 828 KLTGEIPTQ-IGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLI 886
            L           L ++  L++S+ N        F  L  + +L ++ N         + 
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469

Query: 887 -VLNTLAVFRVANNNLSGKIPD 907
                L    ++   L      
Sbjct: 470 ANTTNLTFLDLSKCQLEQISWG 491

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  132 bits (333), Expect = 5e-32
 Identities = 77/405 (19%), Positives = 143/405 (35%), Gaps = 29/405 (7%)

Query: 510 GSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQG---HIFSKKF 566
           GS+      +  + +      +L+ ++PD +     S + + LS N L+    + FS   
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVPDDIP---SSTKNIDLSFNPLKILKSYSFS--- 53

Query: 567 NLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPN 626
           N + L  L L   +      K+    + L  L L+ N +    P     L++LE+++   
Sbjct: 54  NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113

Query: 627 NNLEGPIPIEFCQLDYLKILDLSNNTIFG-TLPSCFSP-AYIEEIHLSKNKI----EGRL 680
             L         QL  LK L++++N I    LP+ FS    +  + LS N I       L
Sbjct: 114 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 173

Query: 681 ESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQ-LKEVR 739
           + +       ++LD+S N +   I     +  +L  L L  N+    I     Q L  + 
Sbjct: 174 QFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLH 232

Query: 740 LIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEET 799
           +  L            +   ++ EG  +        +               + +     
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV---SA 289

Query: 800 VQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPT 859
           +     ++ Y            + +   +L  + PT    L  +++L L+ N    +I  
Sbjct: 290 MSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK-QFPTL--DLPFLKSLTLTMNKG--SISF 344

Query: 860 TFSNLKQIESLDLSYNLL--LGKIPPQLIVLNTLAVFRVANNNLS 902
               L  +  LDLS N L   G      +  N+L    ++ N   
Sbjct: 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  105 bits (264), Expect = 1e-23
 Identities = 58/378 (15%), Positives = 110/378 (29%), Gaps = 80/378 (21%)

Query: 82  DLGDIKNRKNRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLL 141
           D+   + R    ++   +   F     + ++ L+  +I      + +E + +    + L 
Sbjct: 260 DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI------KYLEDVPKHFKWQSLS 313

Query: 142 LDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVV 201
           +               L  L+ L+L  N+ + S        L +L  LD+S NA+     
Sbjct: 314 IIRCQLKQFPTLD---LPFLKSLTLTMNKGSISFKKVA---LPSLSYLDLSRNALSFS-- 365

Query: 202 PQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASS 261
                     ++L+ L L +N     + ++  GL  L+ L    +      +        
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEF------- 417

Query: 262 ILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYL 321
                                +   SL  L  LD++            +  L  LNTL +
Sbjct: 418 ---------------------SAFLSLEKLLYLDISYTNTKID-FDGIFLGLTSLNTLKM 455

Query: 322 GGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQ 381
            G +  D +       +  +L  L L     +  I          L+ L +         
Sbjct: 456 AGNSFKDNTLS-NVFANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNM--------- 504

Query: 382 LLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNW 441
                 S  +L +L                          + L  +D S   +       
Sbjct: 505 ------SHNNLLFLD------------------SSHYNQLYSLSTLDCSFNRIET-SKGI 539

Query: 442 LVENNTNLKTLLLANNSL 459
           L     +L    L NNS+
Sbjct: 540 LQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.6 bits (150), Expect = 9e-10
 Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 1/106 (0%)

Query: 823 DLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
            ++ N       + +    T +  L+LS   L       F  L +++ L++S+N LL   
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513

Query: 882 PPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 927
                 L +L+    + N +            +    +   N   C
Sbjct: 514 SSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.1 bits (128), Expect = 4e-07
 Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 6/131 (4%)

Query: 816 LMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTG-TIPTTFSNLKQIESLDLSY 874
           L S+  +     KL       IG L  ++ LN++HN +    +P  FSNL  +  +DLSY
Sbjct: 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162

Query: 875 NLLLGKIPPQLIVLNTLAVFRV----ANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP 930
           N +       L  L       +    + N +   I D+  Q     E +  GN     + 
Sbjct: 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIM 221

Query: 931 LSKSCDDNGLT 941
            +   +  GL 
Sbjct: 222 KTCLQNLAGLH 232

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  203 bits (519), Expect = 2e-54
 Identities = 96/668 (14%), Positives = 196/668 (29%), Gaps = 105/668 (15%)

Query: 97  HLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLG 156
              +          + + +   +    +  GV+ L     +  L L        +  ++G
Sbjct: 287 RYYSGTINNTIHSLNWNFN-KELDMWGDQPGVD-LDNNGRVTGLSLAGFGAKGRVPDAIG 344

Query: 157 GLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKF 216
            L+ L++LS   +    S  + G + L+     DMS      + +      L     L  
Sbjct: 345 QLTELKVLSFGTHSETVSGRLFGDEELT----PDMSEERKHRIRMHYKKMFLDYDQRLNL 400

Query: 217 LRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSS 276
             L  ++ N      +  +     +SL D +                          L++
Sbjct: 401 SDLLQDAINR--NPEMKPIKKDSRISLKDTQIGN-----------------------LTN 435

Query: 277 WSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSI 336
               I+  +  L+ L+ +   N+      +  D+                        S 
Sbjct: 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE--------ELSW 487

Query: 337 GSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLS 396
            +L  L  + L        +    L++   L+ L +  +        Q  A +T L    
Sbjct: 488 SNLKDLTDVELYNCPNMTQL-PDFLYDLPELQSLNI--ACNRGISAAQLKADWTRL---- 540

Query: 397 IRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLAN 456
                                      ++   + + NL     +  ++    L  L   +
Sbjct: 541 ------------------ADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH 582

Query: 457 NSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPS-- 514
           N +         ++ KL  L +  N     IP +   +   +  L  S N     IP+  
Sbjct: 583 NKV--RHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIF 638

Query: 515 SFADMKMLKSLDISYNQLTGEIPD----RMAIGCFSLEILALSNNNLQGHIFSKKFNLTN 570
           +   + ++ S+D SYN++  E  +           +   + LS N +Q          + 
Sbjct: 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP 698

Query: 571 LMRLQLDGNKF-------IGEIPKSLSKCYLLGGLYLSDNHLSGKIPR--WLGNLSALED 621
           +  + L  N         +     +    YLL  + L  N L+  +        L  L +
Sbjct: 699 ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSN 757

Query: 622 IIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLE 681
           + +  N      P +      LK   + +                       N+I  +  
Sbjct: 758 MDVSYNCFSS-FPTQPLNSSQLKAFGIRHQ-----------------RDAEGNRILRQWP 799

Query: 682 SIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLI 741
           + I   P L+ L +  N +   +   +   PQL  L +A+N         +C   E  + 
Sbjct: 800 TGITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMY 856

Query: 742 DLSHNNLS 749
            L ++   
Sbjct: 857 VLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  199 bits (507), Expect = 6e-53
 Identities = 87/570 (15%), Positives = 181/570 (31%), Gaps = 85/570 (14%)

Query: 424 LKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFF 483
           +  + L+     G+ P+ +    T LK L    +S   S R+           +   +  
Sbjct: 325 VTGLSLAGFGAKGRVPDAI-GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 484 RGHIPVEIGTYLSGLMDLNLSRNAFNG----------------------------SIPSS 515
           R H       Y   L   +L ++A N                              I  +
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA 443

Query: 516 FADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQ 575
              +  L+ +  + +  T +            E           +      NL +L  ++
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNI------AVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497

Query: 576 LDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSG---------KIPRWLGNLSALEDIIMPN 626
           L     + ++P  L     L  L ++ N             ++         ++   M  
Sbjct: 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557

Query: 627 NNLEG-PIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIH 685
           NNLE  P      ++  L +LD  +N +   L +  +   + ++ L  N+IE   E    
Sbjct: 558 NNLEEFPASASLQKMVKLGLLDCVHNKV-RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCA 616

Query: 686 YSPYLMTLDLSYNCLHGSIPTW--IDRLPQLSYLLLANNYIEGEIP-----IQICQLKEV 738
           ++  +  L  S+N L   IP       +  +  +  + N I  E       +   +    
Sbjct: 617 FTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675

Query: 739 RLIDLSHNNLSGHIPPCLVN-TALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEE 797
             + LS+N +           + ++         I  S++  ++  +P  +        +
Sbjct: 676 STVTLSYNEIQKFPTELFATGSPIST--------IILSNNLMTS--IPENSLKPKDGNYK 725

Query: 798 ETVQFTTKNMSY--------YYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLS 849
            T   TT ++ +         ++   L  +S +D+S N  +   PTQ    ++++A  + 
Sbjct: 726 NTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIR 784

Query: 850 H------NNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNL-S 902
           H      N +    PT  +    +  L +  N  + K+  +L     L +  +A+N   S
Sbjct: 785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKL--TPQLYILDIADNPNIS 841

Query: 903 GKIPDRVAQFSTFEED-SYEGNPFLCGLPL 931
             +               Y+    + G   
Sbjct: 842 IDVTSVCPYIEAGMYVLLYDKTQDIRGCDA 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  178 bits (453), Expect = 4e-46
 Identities = 78/520 (15%), Positives = 157/520 (30%), Gaps = 56/520 (10%)

Query: 273 SLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKV 332
            L  W       LD+   +  L +        V P     L +L  L  G  +     ++
Sbjct: 307 ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV-PDAIGQLTELKVLSFGTHSETVSGRL 365

Query: 333 LQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSL 392
                  P +          +       L     L    L++  ++ +  ++ I   + +
Sbjct: 366 FGDEELTPDM--SEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 393 KYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTL 452
                +   L   +         K +     L+ +  ++   +            + +  
Sbjct: 424 SLKDTQIGNLTNRITF-----ISKAIQRLTKLQIIYFANSPFTY------DNIAVDWEDA 472

Query: 453 LLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNG-- 510
                  + +  +   + + L  +++        +P  +   L  L  LN++ N      
Sbjct: 473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAA 531

Query: 511 -------SIPSSFADMKMLKSLDISYNQLTGEIPDRMAIG-CFSLEILALSNNNLQGHIF 562
                   +         ++   + YN L  E P   ++     L +L   +N +     
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKV--RHL 588

Query: 563 SKKFNLTNLMRLQLDGNKFIGEIPKSL-SKCYLLGGLYLSDNHLSGKIPRW--LGNLSAL 619
                   L  L+LD N+ I EIP+   +    + GL  S N L   IP      ++  +
Sbjct: 589 EAFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVM 646

Query: 620 EDIIMPNNNLEG-----PIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAY-IEEIHLSK 673
             +    N +          ++  +      + LS N I       F+    I  I LS 
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706

Query: 674 NKIE-------GRLESIIHYSPYLMTLDLSYNCLHGSIPTWI--DRLPQLSYLLLANNYI 724
           N +           +     +  L T+DL +N L  S+        LP LS + ++ N  
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCF 765

Query: 725 EGEIPIQICQLKEVRLIDLSH------NNLSGHIPPCLVN 758
               P Q     +++   + H      N +    P  +  
Sbjct: 766 S-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT 804

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  165 bits (420), Expect = 4e-42
 Identities = 87/529 (16%), Positives = 157/529 (29%), Gaps = 61/529 (11%)

Query: 430 SHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPV 489
             L++ G  P   ++NN  +  L LA     G     I    +L  L   T+       +
Sbjct: 306 KELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL 365

Query: 490 EIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTG--EIPDRMAIGCFSL 547
                L+  M                    + L   D+  + +    E+         SL
Sbjct: 366 FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISL 425

Query: 548 EILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLS 606
           +   + N   +    SK    LT L  +    + F  +      +               
Sbjct: 426 KDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED-----ANSDYAKQY 480

Query: 607 GKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYI 666
                   NL  L D+ + N      +P     L  L+ L+++ N              +
Sbjct: 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRL 540

Query: 667 ----------EEIHLSKNKIEG-RLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLS 715
                     +  ++  N +E     + +     L  LD  +N +   +        +L+
Sbjct: 541 ADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLT 598

Query: 716 YLLLANNYIEGEIPIQICQ-LKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISS 774
            L L  N IE EIP   C    +V  +  SHN L   IP      ++             
Sbjct: 599 DLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYV----------- 645

Query: 775 SSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIP 834
                    + SV  + + IG E      + +          ++ S + LS N++     
Sbjct: 646 ---------MGSVDFSYNKIGSEGRNISCSMDDYK------GINASTVTLSYNEIQKFPT 690

Query: 835 TQIGYLTRIRALNLSHNNLT-------GTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIV 887
                 + I  + LS+N +T             + N   + ++DL +N  L  +      
Sbjct: 691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRA 749

Query: 888 --LNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKS 934
             L  L+   V+ N  S   P +    S  +           G  + + 
Sbjct: 750 TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  132 bits (333), Expect = 1e-31
 Identities = 49/416 (11%), Positives = 122/416 (29%), Gaps = 64/416 (15%)

Query: 500 DLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFS-LEILALSNNNLQ 558
           + N   + +         +   +  L ++     G +PD  AIG  + L++L+   ++  
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD--AIGQLTELKVLSFGTHSET 360

Query: 559 GHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSA 618
                           +   ++                 + +    +     + L     
Sbjct: 361 VSGRLFGDEELTPDMSEERKHR-----------------IRMHYKKMFLDYDQRLNLSDL 403

Query: 619 LEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSP-AYIEEIHLSKNKIE 677
           L+D I  N  ++         L   +I +L+N      +         ++ I+ + +   
Sbjct: 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR--ITFISKAIQRLTKLQIIYFANSPFT 461

Query: 678 GRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKE 737
               ++          +  Y   + +       L  L+ + L N     ++P  +  L E
Sbjct: 462 YDNIAV-----DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516

Query: 738 VRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSD----DASTYVLPSVAPNGSP 793
           ++ ++++ N            T L +          +             L    P  + 
Sbjct: 517 LQSLNIACNRGISAAQLKADWTRLADD-------EDTGPKIQIFYMGYNNLEEF-PASAS 568

Query: 794 IGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNL 853
           + +                   ++ +  +D   NK+   +    G   ++  L L +N +
Sbjct: 569 LQK-------------------MVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQI 607

Query: 854 TGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIV--LNTLAVFRVANNNLSGKIPD 907
                   +   Q+E L  S+N  L  IP       +  +     + N +  +  +
Sbjct: 608 EEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  121 bits (306), Expect = 2e-28
 Identities = 39/320 (12%), Positives = 91/320 (28%), Gaps = 50/320 (15%)

Query: 475 TLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTG 534
             +   + +     V++      +  L+L+     G +P +   +  LK L    +  T 
Sbjct: 303 NFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV 361

Query: 535 EIPDRMAIGCFSLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNKF------------ 581
                      + ++     + ++ H           L    L  +              
Sbjct: 362 -SGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD 420

Query: 582 ----------------IGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMP 625
                           I  I K++ +   L  +Y +++  +             ED    
Sbjct: 421 SRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNI-----AVDWEDANSD 475

Query: 626 NNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAY-IEEIHLSKNKIEG------ 678
                    + +  L  L  ++L N      LP        ++ ++++ N+         
Sbjct: 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535

Query: 679 ---RLESIIHYSPYLMTLDLSYNCLHG-SIPTWIDRLPQLSYLLLANNYIEGEIPIQICQ 734
              RL       P +    + YN L        + ++ +L  L   +N +   +      
Sbjct: 536 DWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA-FGT 593

Query: 735 LKEVRLIDLSHNNLSGHIPP 754
             ++  + L +N +   IP 
Sbjct: 594 NVKLTDLKLDYNQIE-EIPE 612

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  121 bits (306), Expect = 2e-28
 Identities = 53/416 (12%), Positives = 125/416 (30%), Gaps = 61/416 (14%)

Query: 523 KSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFI 582
            ++ I   +    I D  A+     E L   N        +   +  N      + + + 
Sbjct: 255 ANVPIQLKETAEYIKDYKALKAI-WEALDGKNWRYYSGTINNTIHSLN-WNFNKELDMWG 312

Query: 583 GEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDY 642
            +    L     + GL L+     G++P  +G L+ L+ +    ++      +   +   
Sbjct: 313 DQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELT 372

Query: 643 LKILDLSNNTIFGTLPSCF--SPAYIEEIHLSKNKIE-----GRLESIIHYSPYLMTLDL 695
             + +   + I       F      +    L ++ I        ++     S     +  
Sbjct: 373 PDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN 432

Query: 696 SYNCLHGSIPTWIDRLPQLSYLLLANNYIEG-------------------EIPIQICQLK 736
             N +   I   I RL +L  +  AN+                          +    LK
Sbjct: 433 LTNRIT-FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK 491

Query: 737 EVRLIDLSHNNLSGHIPPCLVN-TALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIG 795
           ++  ++L +      +P  L +   L          ++ + +   +     +  + + + 
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQS--------LNIACNRGIS--AAQLKADWTRLA 541

Query: 796 EEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTG-EIPTQIGYLTRIRALNLSHNNLT 854
           ++E                    +    +  N L        +  + ++  L+  HN + 
Sbjct: 542 DDEDT---------------GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586

Query: 855 GTIPTTFSNLKQIESLDLSYNLLLGKIPPQL-IVLNTLAVFRVANNNLSGKIPDRV 909
             +   F    ++  L L YN  + +IP       + +     ++N L   IP+  
Sbjct: 587 -HLE-AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIF 638

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.3 bits (141), Expect = 1e-08
 Identities = 13/115 (11%), Positives = 33/115 (28%), Gaps = 6/115 (5%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
            +   +    +    +    R+  L+L+     G +P     L +++ L    +      
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 882 PPQLIVLNTLAVFRVANNNLSGKIP------DRVAQFSTFEEDSYEGNPFLCGLP 930
                   T  +     + +           D+    S   +D+   NP +  + 
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  175 bits (446), Expect = 2e-45
 Identities = 124/683 (18%), Positives = 223/683 (32%), Gaps = 100/683 (14%)

Query: 101 SLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSI-FSSLGGLS 159
            +       E L LS+N I              L  L+ L L S Y   +I   +   L 
Sbjct: 18  QVPQVLNTTERLLLSFNYI----RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73

Query: 160 SLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRL 219
           +LRIL L  +++   +       L +L EL + +  + + V+  G      L  L  L L
Sbjct: 74  NLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY--FRNLKALTRLDL 130

Query: 220 DYNSFNS-SIFSSLGGLSSLRILSLADNRFNG--SIDIKGKQASSILRVP-SFVDLVSLS 275
             N   S  +  S G L+SL+ +  + N+       +++  Q  ++     +   L S  
Sbjct: 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190

Query: 276 SWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQS 335
           S   G          LE LD++ N     +       + K                   S
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ---------------AFS 235

Query: 336 IGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLL----QSIASFTS 391
           +     +      F N    I + + + F  L    +   DL    +     +   +   
Sbjct: 236 LILAHHIMGAGFGFHN----IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD 291

Query: 392 LKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKT 451
           LK L++    +             +  Y   +L+ ++LS+  L   + +        +  
Sbjct: 292 LKVLNLAYNKIN--------KIADEAFYGLDNLQVLNLSYNLLGELYSSNF-YGLPKVAY 342

Query: 452 LLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGS 511
           + L  N +                  +    F+          L  L  L+L  NA    
Sbjct: 343 IDLQKNHIA----------------IIQDQTFKF---------LEKLQTLDLRDNAL--- 374

Query: 512 IPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQG-HIFSKKFNLTN 570
             ++   +  +  + +S N+L       +     +  ++ LS N L+   I      + +
Sbjct: 375 --TTIHFIPSIPDIFLSGNKLV-----TLPKINLTANLIHLSENRLENLDILYFLLRVPH 427

Query: 571 LMRLQLDGNKFIG-EIPKSLSKCYLLGGLYLSDNHLSGKI-----PRWLGNLSALEDIIM 624
           L  L L+ N+F      ++ S+   L  L+L +N L               LS L+ + +
Sbjct: 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487

Query: 625 PNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESII 684
            +N L    P  F  L  L+ L L++N +   L     PA +E + +S+N++      + 
Sbjct: 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLEILDISRNQLLAPNPDVF 546

Query: 685 HYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQIC-----QLKEVR 739
                L  LD+++N            L      L   N      P  I          V 
Sbjct: 547 ---VSLSVLDITHNKFICECE-----LSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVS 598

Query: 740 LIDLSHNNLSGHIPPCLVNTALN 762
           L  LS            +  +L 
Sbjct: 599 LFSLSTEGCDEEEVLKSLKFSLF 621

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  154 bits (391), Expect = 1e-38
 Identities = 100/563 (17%), Positives = 189/563 (33%), Gaps = 63/563 (11%)

Query: 91  NRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNS 150
           ++ +   ++   F     L  LDL  + I     +        L +L  L L     +++
Sbjct: 57  SQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA----FQGLFHLFELRLYFCGLSDA 112

Query: 151 IFSS--LGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERL 208
           +        L +L  L L+ N++           L++L+ +D S N I  +     LE L
Sbjct: 113 VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV-CEHELEPL 171

Query: 209 STLSNLKFLRLDYNSFNSSIFSSLGGLS------SLRILSLADNRFNGSIDIKGKQASSI 262
                L F  L  NS  S +    G          L IL ++ N +   I      A S 
Sbjct: 172 QGK-TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230

Query: 263 LRVPSFVDLVSLSSWSVGIN--TGLDS-------LSNLEELDMTNNAINNLVVPKDYRCL 313
            +  S +    +     G +     D         S++  LD+++  + +L   + +  L
Sbjct: 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL-NSRVFETL 289

Query: 314 RKLNTLYLGG--IAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELL 371
           + L  L L    I  I       +   L +L+ L L +      + +   +    +  + 
Sbjct: 290 KDLKVLNLAYNKINKIADE----AFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYID 344

Query: 372 LVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSH 431
           L K+ + + Q  Q+      L+ L +R   L               ++    + ++ LS 
Sbjct: 345 LQKNHIAIIQ-DQTFKFLEKLQTLDLRDNAL-------------TTIHFIPSIPDIFLSG 390

Query: 432 LNLSGKFPNWLVENNTNLKTLLLANNSLFG-SFRMPIHSHQKLATLDVSTNFFRGHIPVE 490
             L       L + N     + L+ N L        +     L  L ++ N F      +
Sbjct: 391 NKLVT-----LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445

Query: 491 IGTYLSGLMDLNLSRNAFNGSIPSS-----FADMKMLKSLDISYNQLTGEIPDRMAIGCF 545
             +    L  L L  N    +  +      F  +  L+ L +++N L   +P  +     
Sbjct: 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLT 504

Query: 546 SLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHL 605
           +L  L+L++N L     S      NL  L +  N+ +   P        L  L ++ N  
Sbjct: 505 ALRGLSLNSNRLTV--LSHNDLPANLEILDISRNQLLAPNPDVFVS---LSVLDITHNKF 559

Query: 606 SGKIP-RWLGNLSALEDIIMPNN 627
             +       N     ++ +   
Sbjct: 560 ICECELSTFINWLNHTNVTIAGP 582

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  149 bits (379), Expect = 4e-37
 Identities = 109/640 (17%), Positives = 214/640 (33%), Gaps = 83/640 (12%)

Query: 422 HDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSF-RMPIHSHQKLATLDVST 480
           +  + + LS   +              L+ L L +     +  +    +   L  LD+ +
Sbjct: 24  NTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 481 NFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSI--PSSFADMKMLKSLDISYNQLTGEIPD 538
           +     +  +    L  L +L L     + ++     F ++K L  LD+S NQ+      
Sbjct: 83  SKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 539 RMAIGCFSLEILALSNNNLQGHIFSKKFN---LTNLMRLQLDGNKFIGEIPKSLSKCY-- 593
                  SL+ +  S+N +   +   +        L    L  N     +     KC   
Sbjct: 142 PSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 594 ----LLGGLYLSDNHLSGKIPR------------WLGNLSALEDIIMPNNNLEGPIPIEF 637
               +L  L +S N  +  I               L     +       +N++ P    F
Sbjct: 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260

Query: 638 CQLD--YLKILDLSNNTIFGTLPSCFSPAY-IEEIHLSKNKIEGRLESIIHYSPYLMTLD 694
             L    ++ LDLS+  +F      F     ++ ++L+ NKI    +   +    L  L+
Sbjct: 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320

Query: 695 LSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSG-HIP 753
           LSYN L     +    LP+++Y+ L  N+I          L++++ +DL  N L+  H  
Sbjct: 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFI 380

Query: 754 PCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTK-------N 806
           P + +  L+         + +      T  L  ++ N   +   + + F  +        
Sbjct: 381 PSIPDIFLSGN------KLVTLPKINLTANLIHLSEN--RLENLDILYFLLRVPHLQILI 432

Query: 807 MSYYYQGRI--------LMSMSGIDLSCNKLTGEIPTQI-----GYLTRIRALNLSHNNL 853
           ++                 S+  + L  N L     T++       L+ ++ L L+HN L
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492

Query: 854 TGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFS 913
               P  FS+L  +  L L+ N L   +     +   L +  ++ N L    PD    F 
Sbjct: 493 NSLPPGVFSHLTALRGLSLNSNRL--TVLSHNDLPANLEILDISRNQLLAPNPD---VFV 547

Query: 914 TFEEDSYEGNPFLCGLPLS------------KSCDDNGLTTATPEAYTENK-------EG 954
           +        N F+C   LS             +     +    P++++            
Sbjct: 548 SLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGC 607

Query: 955 DSLIDMDSFLITFTVSYGIVIIGIIGVLCINPYWRRRWFY 994
           D    + S   +  +   + +   +  +     +R   F 
Sbjct: 608 DEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFI 647

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 95.3 bits (237), Expect = 5e-20
 Identities = 66/366 (18%), Positives = 109/366 (29%), Gaps = 50/366 (13%)

Query: 545 FSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPK-SLSKCYLLGGLYLSDN 603
           F   I      NL   +      L    RL L  N  I  +   S      L  L L   
Sbjct: 4   FDGRIAFYRFCNLT-QVPQ---VLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQ 58

Query: 604 HLSGKI-PRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFS 662
           +    I      NL  L  + + ++ +    P  F  L +L  L L              
Sbjct: 59  YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC----------- 107

Query: 663 PAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHG-SIPTWIDRLPQLSYLLLAN 721
                   LS   ++   +        L  LDLS N +    +     +L  L  +  ++
Sbjct: 108 -------GLSDAVLK---DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157

Query: 722 NYIEGEIP--IQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDA 779
           N I       ++  Q K +    L+ N+L   +                   +     D 
Sbjct: 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC------MNPFRNMVLEILDV 211

Query: 780 STYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGY 839
           S                         + S  +   +   + G     + +          
Sbjct: 212 SGNGWTVDITG---------NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262

Query: 840 LTR--IRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIV-LNTLAVFRV 896
           L R  +R L+LSH  +       F  LK ++ L+L+YN  + KI  +    L+ L V  +
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKIADEAFYGLDNLQVLNL 321

Query: 897 ANNNLS 902
           + N L 
Sbjct: 322 SYNLLG 327

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 91.0 bits (226), Expect = 9e-19
 Identities = 61/335 (18%), Positives = 109/335 (32%), Gaps = 60/335 (17%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSL 155
             +    F     L+ L+LS+N +              L  + ++ L  N+       + 
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLL----GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358

Query: 156 GGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLK 215
             L  L+ L L DN L        +  + ++ ++ +S N +  L                
Sbjct: 359 KFLEKLQTLDLRDNALT------TIHFIPSIPDIFLSGNKLVTLP--------KINLTAN 404

Query: 216 FLRLDYNSFNS-SIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSL 274
            + L  N   +  I   L  +  L+IL L  NRF           SS     +  +  SL
Sbjct: 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRF-----------SSCSGDQTPSENPSL 453

Query: 275 -----------SSWSVGINTG-LDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLG 322
                       +W   +     + LS+L+ L + +N +N+L  P  +  L  L  L L 
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL-PPGVFSHLTALRGLSLN 512

Query: 323 G--IAMIDGSKVLQSIGSL---------------PSLKTLYLLFTNFKGTIVNQELHNFT 365
              + ++  + +  ++  L                SL  L +    F          N+ 
Sbjct: 513 SNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWL 572

Query: 366 NLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGC 400
           N   + +      +  +     S  SL  LS  GC
Sbjct: 573 NHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGC 607

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  169 bits (429), Expect = 2e-44
 Identities = 109/544 (20%), Positives = 188/544 (34%), Gaps = 70/544 (12%)

Query: 135 NNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYN 194
            + K L L  N   +    S      L++L L+   +  +I+     SLS+L  L ++ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 195 AIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDI 254
            I +L    G    S LS+L+ L     +  S     +G L +L+ L++A N        
Sbjct: 87  PIQSL--ALGA--FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ----- 137

Query: 255 KGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLR 314
                                  S  +     +L+NLE LD+++N I ++    D R L 
Sbjct: 138 -----------------------SFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVLH 173

Query: 315 KL----NTLYLGG--IAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLE 368
           ++     +L L    +  I              L  L L        ++   +     LE
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQ-----PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 228

Query: 369 ELLLVKSDLHVSQLLQSIASFT------------SLKYLSIRGCVLKGALHGQDGGTFPK 416
              LV  +      L+                   L YL      +    +     +   
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288

Query: 417 FLYHQ-----HDLKNVDLSHLNLSGKFPNWLVENN-TNLKTLLLANNSLFGSFRMPIHSH 470
            +            N    HL L              +LK L   +N    +F       
Sbjct: 289 LVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF--SEVDL 346

Query: 471 QKLATLDVSTNFFRG-HIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISY 529
             L  LD+S N         +     + L  L+LS N    ++ S+F  ++ L+ LD  +
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 405

Query: 530 NQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNKFIGEIPK- 587
           + L       + +   +L  L +S+ + +   F+  F  L++L  L++ GN F       
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

Query: 588 SLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILD 647
             ++   L  L LS   L    P    +LS+L+ + M +N L+      F +L  L+ + 
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW 524

Query: 648 LSNN 651
           L  N
Sbjct: 525 LHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  150 bits (380), Expect = 4e-38
 Identities = 89/531 (16%), Positives = 169/531 (31%), Gaps = 56/531 (10%)

Query: 106 FQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILS 165
               ++LDLS+N +                 L+ L L           +   LS L  L 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 166 LADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFN 225
           L  N +  S+ +     LS+L++L      + +L        +  L  LK L + +N   
Sbjct: 83  LTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASL--ENFP--IGHLKTLKELNVAHNLIQ 137

Query: 226 S-SIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSV----- 279
           S  +      L++L  L L+ N+               +       L  +   ++     
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKI------------QSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 280 -----GINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQ 334
                 I  G      L +L + NN  +  V+    + L  L    L      +   + +
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 335 -SIGSLPSLKTLYLLFTNFKG--TIVNQELHNFTNLEELLLVKSDLHVSQL--LQSIASF 389
               +L  L  L +           ++  +  F  L  +      L    +  ++  +  
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV--SSFSLVSVTIERVKDFSYN 303

Query: 390 TSLKYLSIRGCVLKG------------ALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGK 437
              ++L +  C                      GG     +     L+ +DLS   LS K
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS-LEFLDLSRNGLSFK 362

Query: 438 -FPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLS 496
              +      T+LK L L+ N +  +        ++L  LD   +  +      +   L 
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 497 GLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNN 556
            L+ L++S      +    F  +  L+ L ++ N         +     +L  L LS   
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 557 LQGHIFSKKF-NLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLS 606
           L+  +    F +L++L  L +  N+          +   L  ++L  N   
Sbjct: 482 LE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  128 bits (324), Expect = 4e-31
 Identities = 92/487 (18%), Positives = 165/487 (33%), Gaps = 58/487 (11%)

Query: 282 NTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG--IAMIDGSKVLQSIGSL 339
           +    S   L+ LD++   I  +     Y+ L  L+TL L G  I  +       +   L
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALG----AFSGL 99

Query: 340 PSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRG 399
            SL+ L  + TN   ++ N  + +   L+EL +  + +   +L +  ++ T+L++L +  
Sbjct: 100 SSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 400 CVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSL 459
             +                       ++DLS   ++   P         L  L L NN  
Sbjct: 159 NKI----QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFD 212

Query: 460 FGS-FRMPIHSHQKLATLDVSTNFFRGH--IPVEIGTYLSGLMDLNLSRNAFNG------ 510
             +  +  I     L    +    FR    +     + L GL +L +             
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 511 SIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTN 570
            I   F  +  + S  +    +   + D      F  + L L N             L +
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIE-RVKD--FSYNFGWQHLELVNCKFGQFPT---LKLKS 326

Query: 571 LMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLS--GKIPRWLGNLSALEDIIMPNNN 628
           L RL    NK  G    S      L  L LS N LS  G   +     ++L+ + +  N 
Sbjct: 327 LKRLTFTSNK-GGNAF-SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 629 LEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSP 688
           +   +   F  L+ L+ LD  ++ +   +                        S+     
Sbjct: 385 VIT-MSSNFLGLEQLEHLDFQHSNL-KQMSE---------------------FSVFLSLR 421

Query: 689 YLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQI-CQLKEVRLIDLSHNN 747
            L+ LD+S+     +     + L  L  L +A N  +      I  +L+ +  +DLS   
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 748 LSGHIPP 754
           L   + P
Sbjct: 482 LE-QLSP 487

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  127 bits (322), Expect = 9e-31
 Identities = 81/434 (18%), Positives = 146/434 (33%), Gaps = 54/434 (12%)

Query: 496 SGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNN 555
               +L+LS N        SF     L+ LD+S  ++   I D        L  L L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 556 NLQG---HIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHL-SGKIPR 611
            +Q      FS    L++L +L              +     L  L ++ N + S K+P 
Sbjct: 87  PIQSLALGAFS---GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 612 WLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKI----LDLSNNTIFGTLPSCFSPAYIE 667
           +  NL+ LE + + +N ++     +   L  + +    LDLS N +    P  F    + 
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 203

Query: 668 EIHLSKNKIEGRL-ESIIHYSPYLMTLDL------SYNCLHGSIPTWIDRLPQLSYLLLA 720
           ++ L  N     + ++ I     L    L      +   L     + ++ L  L+     
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 721 NNYIEG---EIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSD 777
             Y++    +I      L  V    L    +   +     N                   
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQH-------------- 308

Query: 778 DASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRI-----LMSMSGIDLSCNKLT-- 830
                 L  V          +         +    G       L S+  +DLS N L+  
Sbjct: 309 ------LELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362

Query: 831 GEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQ--LIVL 888
           G         T ++ L+LS N +  T+ + F  L+Q+E LD  ++  L ++      + L
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSL 420

Query: 889 NTLAVFRVANNNLS 902
             L    +++ +  
Sbjct: 421 RNLIYLDISHTHTR 434

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  117 bits (296), Expect = 1e-27
 Identities = 85/500 (17%), Positives = 147/500 (29%), Gaps = 48/500 (9%)

Query: 425 KNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFR 484
                  LN   K P+ L     + K L L+ N L         S  +L  LD+S    +
Sbjct: 10  ITYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 485 GHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGC 544
             I       LS L  L L+ N        +F+ +  L+ L      L   + +      
Sbjct: 66  -TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHL 123

Query: 545 FSLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNKFIGEIPKSL----SKCYLLGGLY 599
            +L+ L +++N +Q     + F NLTNL  L L  NK        L        L   L 
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 600 LSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIE-FCQLDYLKILDLSNNTIFGTLP 658
           LS N ++  I         L  + + NN     +       L  L++  L          
Sbjct: 184 LSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF----- 237

Query: 659 SCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGS---IPTWIDRLPQLS 715
                        ++  +E   +S +     L   +     L      I    + L  +S
Sbjct: 238 ------------RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285

Query: 716 YLLLANNYIEGEIPIQI-CQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISS 774
              L +  IE           + + L++             L                  
Sbjct: 286 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 345

Query: 775 ---------SSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQG-RILMSMSGIDL 824
                    S +  S     S +  G+     + +  +   +         L  +  +D 
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTT--SLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403

Query: 825 SCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPP 883
             + L       +   L  +  L++SH +        F+ L  +E L ++ N       P
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 884 QLIV-LNTLAVFRVANNNLS 902
            +   L  L    ++   L 
Sbjct: 464 DIFTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.2 bits (211), Expect = 4e-17
 Identities = 50/221 (22%), Positives = 80/221 (36%), Gaps = 44/221 (19%)

Query: 80  KLDLGDIKNRKNRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKF 139
            LDL       N  S +   +        L+ LDLS+N +     N        L  L+ 
Sbjct: 351 FLDLSR-----NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-----FLGLEQLEH 400

Query: 140 LLLDSNYFNN-SIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDN 198
           L    +     S FS    L +L  L ++             + LS+LE L M+ N+   
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQE 459

Query: 199 LVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQ 258
             +P   +  + L NL FL L          ++   LSSL++L++A N+           
Sbjct: 460 NFLP---DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ----------- 505

Query: 259 ASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNN 299
                          L S   GI    D L++L+++ +  N
Sbjct: 506 ---------------LKSVPDGI---FDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.6 bits (124), Expect = 9e-07
 Identities = 16/85 (18%), Positives = 29/85 (34%)

Query: 823 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIP 882
           DLS N L             ++ L+LS   +       + +L  + +L L+ N +     
Sbjct: 34  DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93

Query: 883 PQLIVLNTLAVFRVANNNLSGKIPD 907
                L++L        NL+     
Sbjct: 94  GAFSGLSSLQKLVAVETNLASLENF 118

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 875
           +DLS  +L    PT    L+ ++ LN++ N L       F  L  ++ + L  N
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  154 bits (390), Expect = 1e-39
 Identities = 103/534 (19%), Positives = 186/534 (34%), Gaps = 67/534 (12%)

Query: 134 LNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSY 193
              +K L L  N         L   ++L++L L  +R+N +I+     SL +LE LD+S 
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSD 83

Query: 194 NAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNS-SIFSSLGGLSSLRILSLADNRFNGSI 252
           N + +L           LS+LK+L L  N + +  + S    L++L+ L + +       
Sbjct: 84  NHLSSL--SSSW--FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV------ 133

Query: 253 DIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRC 312
                +  S +R   F                   L++L EL++   ++ N    +  + 
Sbjct: 134 -----ETFSEIRRIDF-----------------AGLTSLNELEIKALSLRNY-QSQSLKS 170

Query: 313 LRKLNTLYLGG--IAMIDGSKVLQSIGSLPSLKTLYL----LFTNFKGTIVNQELHNFTN 366
           +R ++ L L     A +           L S++ L L    L       +   E+ +   
Sbjct: 171 IRDIHHLTLHLSESAFLLEI----FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK 226

Query: 367 LEELLLVK-SDLHVSQLLQSIASFTSLKYLSIRGCVLKG--ALHGQDGGTFPKFLYHQH- 422
                    +D   ++LL+ +     L  +    C L G    +  +     +    +  
Sbjct: 227 KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV 286

Query: 423 DLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSH-QKLATLDVSTN 481
            ++ + +    L              +K + + N+ +F         H + L  LD+S N
Sbjct: 287 TIRRLHIPQFYLFYDLSTVY-SLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSEN 344

Query: 482 FFRGHIPVEIGTY--LSGLMDLNLSRNAFN--GSIPSSFADMKMLKSLDISYNQLTGEIP 537
                             L  L LS+N              +K L SLDIS N     +P
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMP 403

Query: 538 DRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGG 597
           D        +  L LS+  ++  + +       L  L +  N  +      L +   L  
Sbjct: 404 DSCQ-WPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNN-LDSFSLFLPR---LQE 455

Query: 598 LYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNN 651
           LY+S N L   +P        L  + +  N L+      F +L  L+ + L  N
Sbjct: 456 LYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  142 bits (360), Expect = 1e-35
 Identities = 104/577 (18%), Positives = 194/577 (33%), Gaps = 80/577 (13%)

Query: 182 SLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRIL 241
           S       D    +  +  +P GL      + +K L L +N         L   ++L++L
Sbjct: 3   SCDASGVCDGRSRSFTS--IPSGL-----TAAMKSLDLSFNKITYIGHGDLRACANLQVL 55

Query: 242 SLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGIN-------TGLDSLSNLEEL 294
            L  +R             + +   +F  L SL    +  N       +    LS+L+ L
Sbjct: 56  ILKSSRI------------NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103

Query: 295 DMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKG 354
           ++  N    L V   +  L  L TL +G +      +       L SL  L +   + + 
Sbjct: 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR-IDFAGLTSLNELEIKALSLR- 161

Query: 355 TIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTF 414
              +Q L +  ++  L L  S+      +      +S++YL +R   L            
Sbjct: 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEI-FADILSSVRYLELRDTNLAR--FQFSPLPV 218

Query: 415 PKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLA 474
            +       L        + S      L+     L  +   + +L G           ++
Sbjct: 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVS 278

Query: 475 TLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTG 534
            L                     +  L++ +      + + ++ ++ +K + +  +++  
Sbjct: 279 ELGKVE--------------TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF- 323

Query: 535 EIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYL 594
            +P   +    SLE L LS N +                LQ                   
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT------------------ 365

Query: 595 LGGLYLSDNHLS--GKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNT 652
              L LS NHL    K    L  L  L  + +  N    P+P      + ++ L+LS+  
Sbjct: 366 ---LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG 421

Query: 653 IFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLP 712
           I   + +C  P  +E + +S N     L+S   + P L  L +S N L  ++P      P
Sbjct: 422 I-RVVKTCI-PQTLEVLDVSNN----NLDSFSLFLPRLQELYISRNKLK-TLPDA-SLFP 473

Query: 713 QLSYLLLANNYIEGEIPIQICQ-LKEVRLIDLSHNNL 748
            L  + ++ N ++  +P  I   L  ++ I L  N  
Sbjct: 474 VLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  135 bits (342), Expect = 2e-33
 Identities = 106/574 (18%), Positives = 188/574 (32%), Gaps = 110/574 (19%)

Query: 183 LSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILS 242
            + ++ LD+S+N I  +    G   L   +NL+ L L  +  N+    +   L SL  L 
Sbjct: 25  TAAMKSLDLSFNKITYI----GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80

Query: 243 LADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAIN 302
           L+DN                        L SLSS      +    LS+L+ L++  N   
Sbjct: 81  LSDNH-----------------------LSSLSS------SWFGPLSSLKYLNLMGNPYQ 111

Query: 303 NLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELH 362
            L V   +  L  L TL +G +      +       L SL  L +   + +    +Q L 
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRR-IDFAGLTSLNELEIKALSLR-NYQSQSLK 169

Query: 363 NFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQH 422
           +  ++  L L  S+      +      +S++YL +R   L             +      
Sbjct: 170 SIRDIHHLTLHLSESAFLLEI-FADILSSVRYLELRDTNLAR--FQFSPLPVDEVSSPMK 226

Query: 423 DLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNF 482
            L        + S      L+     L  +   + +L G           ++ L      
Sbjct: 227 KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE-- 284

Query: 483 FRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAI 542
                          +  L++ +      + + ++ ++ +K + +  +++   +P   + 
Sbjct: 285 ------------TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQ 331

Query: 543 GCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSD 602
              SLE L LS N +                LQ                      L LS 
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT---------------------LVLSQ 370

Query: 603 NHLS--GKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSC 660
           NHL    K    L  L  L  + +  N    P+P      + ++ L+LS+  I   + +C
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI-RVVKTC 428

Query: 661 FSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLA 720
             P  +E + +S N     L+S   + P L  L +S N L  ++P      P L  +   
Sbjct: 429 I-PQTLEVLDVSNN----NLDSFSLFLPRLQELYISRNKLK-TLPDA-SLFPVLLVM--- 478

Query: 721 NNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPP 754
                                 +S N L   +P 
Sbjct: 479 ---------------------KISRNQLK-SVPD 490

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  132 bits (334), Expect = 2e-32
 Identities = 84/495 (16%), Positives = 175/495 (35%), Gaps = 55/495 (11%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNN-SIFSS 154
             +    F     LE LDLS N++     +        L++LK+L L  N +    + S 
Sbjct: 63  NTIEGDAFYSLGSLEHLDLSDNHL----SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 155 LGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNL 214
              L++L+ L + +      I       L++L EL++   ++ N       + L ++ ++
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY----QSQSLKSIRDI 174

Query: 215 KFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSL 274
             L L  +     +      LSS+R L L D                  +          
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR------------FQFSPLPVDEVS 222

Query: 275 SSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQ 334
           S           +       D + N +  L+         + +   L G+   + S+   
Sbjct: 223 SPMK------KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE-SD 275

Query: 335 SIGSLPSLKTLYL----LFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSI-ASF 389
            +  L  ++T+ +    +   +    ++        ++ + +   +  V  +  S     
Sbjct: 276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV--ENSKVFLVPCSFSQHL 333

Query: 390 TSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSG-KFPNWLVENNTN 448
            SL++L +   ++                     L+ + LS  +L   +    ++    N
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSA-----CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388

Query: 449 LKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAF 508
           L +L ++ N+            +K+  L++S+   R  +   I      L  L++S N  
Sbjct: 389 LTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI---PQTLEVLDVSNN-- 441

Query: 509 NGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKF-N 567
             ++ S    +  L+ L IS N+L   +PD        L ++ +S N L+  +    F  
Sbjct: 442 --NLDSFSLFLPRLQELYISRNKLK-TLPDASLFP--VLLVMKISRNQLK-SVPDGIFDR 495

Query: 568 LTNLMRLQLDGNKFI 582
           LT+L ++ L  N + 
Sbjct: 496 LTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  127 bits (322), Expect = 7e-31
 Identities = 78/501 (15%), Positives = 162/501 (32%), Gaps = 48/501 (9%)

Query: 385 SIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVE 444
            + +  +L+ L ++       ++  +G  F    Y    L+++DLS  +LS    +    
Sbjct: 45  DLRACANLQVLILKSS----RINTIEGDAF----YSLGSLEHLDLSDNHLS-SLSSSWFG 95

Query: 445 NNTNLKTLLLANNSLFG-SFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNL 503
             ++LK L L  N            +   L TL +        I       L+ L +L +
Sbjct: 96  PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155

Query: 504 SRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFS 563
              +       S   ++ +  L +  ++    + +  A    S+  L L + NL    FS
Sbjct: 156 KALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFS 214

Query: 564 KKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDII 623
                     ++    +      +S ++   L    L  + +         + +      
Sbjct: 215 PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE------FDDCTLNGLGD 268

Query: 624 MPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSP-AYIEEIHLSKNKIEGRLES 682
              +  +    +   +   ++ L +    +F  L + +S    ++ I +  +K+     S
Sbjct: 269 FNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCS 328

Query: 683 IIHYSPYLMTLDLSYNCLHGSI---PTWIDRLPQLSYLLLANNYIE--GEIPIQICQLKE 737
              +   L  LDLS N +              P L  L+L+ N++    +    +  LK 
Sbjct: 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388

Query: 738 VRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEE 797
           +  +D+S N        C     +          +SS+        +  V     P    
Sbjct: 389 LTSLDISRNTFHPMPDSCQWPEKMRFLN------LSSTG-------IRVV-KTCIPQT-- 432

Query: 798 ETVQFTTKNMSYYYQGRI---LMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLT 854
                   ++S          L  +  + +S NKL   +P        +  + +S N L 
Sbjct: 433 ----LEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLP-DASLFPVLLVMKISRNQLK 486

Query: 855 GTIPTTFSNLKQIESLDLSYN 875
                 F  L  ++ + L  N
Sbjct: 487 SVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  118 bits (298), Expect = 7e-28
 Identities = 60/344 (17%), Positives = 117/344 (34%), Gaps = 27/344 (7%)

Query: 427 VDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGH 486
            D    + +   P+ L      +K+L L+ N +       + +   L  L + ++     
Sbjct: 10  CDGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-T 64

Query: 487 IPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFS 546
           I  +    L  L  L+LS N  +    S F  +  LK L++  N         +     +
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124

Query: 547 LEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHL 605
           L+ L + N      I    F  LT+L  L++          +SL     +  L L  +  
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184

Query: 606 SGKIPRWLGNLSALEDIIMPNNNLEG-----------PIPIEFCQLDYLKILDLSNNTIF 654
           +  +  +   LS++  + + + NL               P++        + D S N + 
Sbjct: 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244

Query: 655 GTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSP--------YLMTLDLSYNCLHGSIPT 706
             L      + +E    + N +     S               +  L +    L   + T
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304

Query: 707 WIDRLPQLSYLLLANNYIEGEIPIQICQ-LKEVRLIDLSHNNLS 749
               L ++  + + N+ +   +P    Q LK +  +DLS N + 
Sbjct: 305 VYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMV 347

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  114 bits (287), Expect = 2e-26
 Identities = 66/396 (16%), Positives = 130/396 (32%), Gaps = 43/396 (10%)

Query: 522 LKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNK 580
               D      T  IP  +     +++ L LS N +  +I         NL  L L  ++
Sbjct: 7   SGVCDGRSRSFT-SIPSGL---TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSR 61

Query: 581 FIGEIPK-SLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNL-EGPIPIEFC 638
            I  I   +      L  L LSDNHLS     W G LS+L+ + +  N      +   F 
Sbjct: 62  -INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120

Query: 639 QLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYN 698
            L  L+ L + N   F  +                                L  L++   
Sbjct: 121 NLTNLQTLRIGNVETFSEIR----------------------RIDFAGLTSLNELEIKAL 158

Query: 699 CLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVN 758
            L       +  +  + +L L  +     + I    L  VR ++L   NL+      L  
Sbjct: 159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPV 218

Query: 759 TALNEGYHEAVAPISSSSDDASTYVLPSVAPNGS---------PIGEEETVQFTTKNMSY 809
             ++    +     S  +D++   +L  +               +        +  ++  
Sbjct: 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVS 278

Query: 810 YYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIES 869
                  +++  + +    L  ++ T    L +++ + + ++ +     +   +LK +E 
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338

Query: 870 LDLSYNLLLGKIPPQLIVLNTLA---VFRVANNNLS 902
           LDLS NL++ +                  ++ N+L 
Sbjct: 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 73.6 bits (181), Expect = 1e-13
 Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 19/161 (11%)

Query: 89  RKNRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFN 148
            +N          +    + L SLD+S N      ++           ++FL L S    
Sbjct: 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-----CQWPEKMRFLNLSSTGIR 423

Query: 149 NSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERL 208
             + +      +L +L +++N L+ S  +     L  L+EL +S N +      + L   
Sbjct: 424 -VVKT--CIPQTLEVLDVSNNNLD-SFSL----FLPRLQELYISRNKL------KTLPDA 469

Query: 209 STLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFN 249
           S    L  +++  N   S        L+SL+ + L  N ++
Sbjct: 470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 822 IDLSCNKLT--GEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLG 879
           + LS N L    +    +  L  + +L++S N     +P +    +++  L+LS    + 
Sbjct: 366 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSST-GIR 423

Query: 880 KIPPQLIVLNTLAVFRVANNNLS 902
            +   +    TL V  V+NNNL 
Sbjct: 424 VVKTCI--PQTLEVLDVSNNNLD 444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  149 bits (378), Expect = 2e-38
 Identities = 99/526 (18%), Positives = 177/526 (33%), Gaps = 109/526 (20%)

Query: 128 VERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLE 187
           +   + L      +L      +++  S   L  +  L      +     I G++ L+NL 
Sbjct: 17  IFTDTALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK---SIDGVEYLNNLT 71

Query: 188 ELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNR 247
           +++ S N +        +  L  L+ L  + ++ N       + L  L++L  L+L +N+
Sbjct: 72  QINFSNNQL------TDITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQ 123

Query: 248 FNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVP 307
                 +K                                L+NL  L++++N I+++   
Sbjct: 124 ITDIDPLKN-------------------------------LTNLNRLELSSNTISDISAL 152

Query: 308 KDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNL 367
                L  L  L  G     +    L+ + +L +L+ L +             L   TNL
Sbjct: 153 SG---LTSLQQLSFG-----NQVTDLKPLANLTTLERLDISSNKVSDI---SVLAKLTNL 201

Query: 368 EELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNV 427
           E L+   + +     +  +   T+L  LS+ G  LK                        
Sbjct: 202 ESLIATNNQISD---ITPLGILTNLDELSLNGNQLK------------------------ 234

Query: 428 DLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHI 487
           D+  L            + TNL  L LANN +      P+    KL  L +  N      
Sbjct: 235 DIGTL-----------ASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS 281

Query: 488 PVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSL 547
           P+     L+ L +L L+ N      P   +++K L  L + +N ++   P         L
Sbjct: 282 PLA---GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS---SLTKL 333

Query: 548 EILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSG 607
           + L   NN +     S   NLTN+  L    N+     P  L+    +  L L+D   + 
Sbjct: 334 QRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389

Query: 608 KIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTI 653
               +  N+S    +      L    P            D++ N  
Sbjct: 390 APVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  147 bits (372), Expect = 1e-37
 Identities = 100/533 (18%), Positives = 176/533 (33%), Gaps = 98/533 (18%)

Query: 106 FQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILS 165
             +     L   N+            + L+ +  L  D     +     +  L++L  ++
Sbjct: 23  LAEKMKTVLGKTNV------TDTVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 74

Query: 166 LADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFN 225
            ++N+L    DI  L +L+ L ++ M+ N I        +  L+ L+NL  L L  N   
Sbjct: 75  FSNNQLT---DITPLKNLTKLVDILMNNNQI------ADITPLANLTNLTGLTLFNNQIT 125

Query: 226 SSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGIN--- 282
                 L  L++L  L L+ N               I  + +   L SL   S G     
Sbjct: 126 DI--DPLKNLTNLNRLELSSNT--------------ISDISALSGLTSLQQLSFGNQVTD 169

Query: 283 -TGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPS 341
              L +L+ LE LD+++N +++                             +  +  L +
Sbjct: 170 LKPLANLTTLERLDISSNKVSD-----------------------------ISVLAKLTN 200

Query: 342 LKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCV 401
           L++L               L   TNL+EL L  + L   + + ++AS T+L  L +    
Sbjct: 201 LESLIATNNQISDIT---PLGILTNLDELSLNGNQL---KDIGTLASLTNLTDLDLANNQ 254

Query: 402 LKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFG 461
           +               L     L  + L    +S   P   +   T L  L L  N L  
Sbjct: 255 ISN----------LAPLSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLED 301

Query: 462 SFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKM 521
               PI + + L  L +  N      PV     L+ L  L    N  +    SS A++  
Sbjct: 302 I--SPISNLKNLTYLTLYFNNISDISPVS---SLTKLQRLFFYNNKVSD--VSSLANLTN 354

Query: 522 LKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKF 581
           +  L   +NQ++   P         +  L L++        + K N++    ++      
Sbjct: 355 INWLSAGHNQISDLTPLA---NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL 411

Query: 582 IGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIP 634
           I   P ++S         ++ N  S          S    I        G + 
Sbjct: 412 I--APATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  134 bits (340), Expect = 1e-33
 Identities = 86/467 (18%), Positives = 163/467 (34%), Gaps = 50/467 (10%)

Query: 283 TGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSL 342
               +L+   +  +    + + V   D   L ++ TL    +    G K +  +  L +L
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVSQTD---LDQVTTLQADRL----GIKSIDGVEYLNNL 70

Query: 343 KTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVL 402
             +               L N T L ++L+  + +     +  +A+ T+L  L++    +
Sbjct: 71  TQINFSNNQLTDIT---PLKNLTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFNNQI 124

Query: 403 KGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGS 462
                          L +  +L  ++LS   +S       +   T+L+ L   N      
Sbjct: 125 TD----------IDPLKNLTNLNRLELSSNTISDISA---LSGLTSLQQLSFGNQVTDLK 171

Query: 463 FRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKML 522
              P+ +   L  LD+S+N       + +   L+ L  L  + N  +   P     +  L
Sbjct: 172 ---PLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP--LGILTNL 223

Query: 523 KSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFI 582
             L ++ NQL             +L  L L+NN +     +    LT L  L+L  N+  
Sbjct: 224 DELSLNGNQLKDIGTLA---SLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQIS 278

Query: 583 GEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDY 642
              P  L+    L  L L++N L    P  + NL  L  + +  NN+    P+    L  
Sbjct: 279 NISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS--SLTK 332

Query: 643 LKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHG 702
           L+ L   NN +   + S  +   I  +    N+I   L  + +    +  L L+      
Sbjct: 333 LQRLFFYNNKV-SDVSSLANLTNINWLSAGHNQISD-LTPLANL-TRITQLGLNDQAWTN 389

Query: 703 SIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLS 749
           +   +   +   + +      +    P  I         D++ N  S
Sbjct: 390 APVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  132 bits (335), Expect = 5e-33
 Identities = 80/431 (18%), Positives = 158/431 (36%), Gaps = 45/431 (10%)

Query: 333 LQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSL 392
           + +  +L       L  TN   T+      +   +  L   +  +     +  +    +L
Sbjct: 17  IFTDTALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGIKS---IDGVEYLNNL 70

Query: 393 KYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTL 452
             ++     L               L +   L ++ +++  ++   P   + N TNL  L
Sbjct: 71  TQINFSNNQLTD----------ITPLKNLTKLVDILMNNNQIADITP---LANLTNLTGL 117

Query: 453 LLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSI 512
            L NN +      P+ +   L  L++S+N       +     L+ L  L+        + 
Sbjct: 118 TLFNNQITDID--PLKNLTNLNRLELSSNTISDISALS---GLTSLQQLSFGNQV---TD 169

Query: 513 PSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLM 572
               A++  L+ LDIS N+++            +LE L  +NN +          LTNL 
Sbjct: 170 LKPLANLTTLERLDISSNKVSDISVLA---KLTNLESLIATNNQISDITPLG--ILTNLD 224

Query: 573 RLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGP 632
            L L+GN+ + +I  +L+    L  L L++N +S   P  L  L+ L ++ +  N +   
Sbjct: 225 ELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 280

Query: 633 IPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMT 692
            P+    L  L  L+L+ N +   +    +   +  + L  N I       +     L  
Sbjct: 281 SPLA--GLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335

Query: 693 LDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHI 752
           L    N +  S  + +  L  +++L   +N I    P+    L  +  + L+    +   
Sbjct: 336 LFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTPLA--NLTRITQLGLNDQAWTNAP 391

Query: 753 PPCLVNTALNE 763
                N ++  
Sbjct: 392 VNYKANVSIPN 402

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  122 bits (308), Expect = 2e-29
 Identities = 81/434 (18%), Positives = 151/434 (34%), Gaps = 88/434 (20%)

Query: 103 FTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLR 162
                +L  + ++ N I        +  L+ L NL  L L +N   +     L  L++L 
Sbjct: 86  LKNLTKLVDILMNNNQI------ADITPLANLTNLTGLTLFNNQITDI--DPLKNLTNLN 137

Query: 163 ILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYN 222
            L L+ N ++   DI  L  L++L++L       D       L+ L+ L+ L+ L +  N
Sbjct: 138 RLELSSNTIS---DISALSGLTSLQQLSFGNQVTD-------LKPLANLTTLERLDISSN 187

Query: 223 SFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGIN 282
               S  S L  L++L  L   +N+ +                                 
Sbjct: 188 KV--SDISVLAKLTNLESLIATNNQISDIT------------------------------ 215

Query: 283 TGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG--IAMIDGSKVLQSIGSLP 340
             L  L+NL+EL +  N + ++        L  L  L L    I+ +        +  L 
Sbjct: 216 -PLGILTNLDELSLNGNQLKDIGTLAS---LTNLTDLDLANNQISNLAP------LSGLT 265

Query: 341 SLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGC 400
            L  L L             L   T L  L L ++ L   + +  I++  +L YL++   
Sbjct: 266 KLTELKLGANQISNIS---PLAGLTALTNLELNENQL---EDISPISNLKNLTYLTLYFN 319

Query: 401 VLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLF 460
            +               +     L+ +   +  +S       + N TN+  L   +N + 
Sbjct: 320 NISD----------ISPVSSLTKLQRLFFYNNKVSDVSS---LANLTNINWLSAGHNQI- 365

Query: 461 GSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSI-PSSFADM 519
            S   P+ +  ++  L ++              Y + +   N  +N     I P++ +D 
Sbjct: 366 -SDLTPLANLTRITQLGLNDQ----AWTNAPVNYKANVSIPNTVKNVTGALIAPATISDG 420

Query: 520 KMLKSLDISYNQLT 533
                 DI++N  +
Sbjct: 421 GSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  118 bits (299), Expect = 3e-28
 Identities = 83/380 (21%), Positives = 139/380 (36%), Gaps = 40/380 (10%)

Query: 371 LLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLS 430
             +  D  ++Q+  +  +        +    +                     +  +   
Sbjct: 6   ATITQDTPINQI-FTDTALAEKMKTVLGKTNVTD----------TVSQTDLDQVTTLQAD 54

Query: 431 HLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVE 490
            L +        VE   NL  +  +NN L      P+ +  KL  + ++ N      P+ 
Sbjct: 55  RLGIK-SIDG--VEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITPLA 109

Query: 491 IGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEIL 550
               L+ L  L L  N      P    ++  L  L++S N ++         G  SL+ L
Sbjct: 110 ---NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA---LSGLTSLQQL 161

Query: 551 ALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIP 610
           +  N        +   NLT L RL +  NK        L+K   L  L  ++N +S   P
Sbjct: 162 SFGNQVTDLKPLA---NLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP 216

Query: 611 RWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIH 670
             LG L+ L+++ +  N L+    +    L  L  LDL+NN I   L        + E+ 
Sbjct: 217 --LGILTNLDELSLNGNQLKDIGTLA--SLTNLTDLDLANNQI-SNLAPLSGLTKLTELK 271

Query: 671 LSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPI 730
           L  N+I     S +     L  L+L+ N L    P  I  L  L+YL L  N I    P+
Sbjct: 272 LGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV 327

Query: 731 QICQLKEVRLIDLSHNNLSG 750
               L +++ +   +N +S 
Sbjct: 328 S--SLTKLQRLFFYNNKVSD 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.4 bits (116), Expect = 8e-06
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
           +      +       + YL  +  +N S+N LT   P    NL ++  + ++ N +    
Sbjct: 51  LQADRLGIK--SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI--AD 104

Query: 882 PPQLIVLNTLAVFRVANNNLSGKIP 906
              L  L  L    + NN ++   P
Sbjct: 105 ITPLANLTNLTGLTLFNNQITDIDP 129

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.4 bits (116), Expect = 8e-06
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
           ++L+ N+L    P  I  L  +  L L  NN++   P   S+L +++ L    N +    
Sbjct: 292 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV--SD 345

Query: 882 PPQLIVLNTLAVFRVANNNLSGKIP 906
              L  L  +      +N +S   P
Sbjct: 346 VSSLANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
           +  + N+++   P  +G LT +  L+L+ N L      T ++L  +  LDL+ N +    
Sbjct: 204 LIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA 259

Query: 882 PPQLIVLNTLAVFRVANNNLSGKIP 906
           P  L  L  L   ++  N +S   P
Sbjct: 260 P--LSGLTKLTELKLGANQISNISP 282

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 816 LMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 875
           L  ++ + L  N+++   P  +  LT +  L L+ N L    P   SNLK +  L L +N
Sbjct: 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 319

Query: 876 LLLGKIPPQLIVLNTLAVFRVANNNLSG 903
            +    P  +  L  L      NN +S 
Sbjct: 320 NISDISP--VSSLTKLQRLFFYNNKVSD 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.6 bits (106), Expect = 2e-04
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 11/87 (12%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
           I ++ N++    P  +  LT +  L L +N +T   P    NL  +  L+LS N  +  I
Sbjct: 95  ILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN-TISDI 149

Query: 882 PP--QLIVLNTLAVFRVANNNLSGKIP 906
                L  L  L+      N ++   P
Sbjct: 150 SALSGLTSLQQLSF----GNQVTDLKP 172

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.3 bits (100), Expect = 7e-04
 Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 6/84 (7%)

Query: 823 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIP 882
            L    +T  +      L ++  L      +          L  +  ++ S N L    P
Sbjct: 30  VLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINFSNNQLTDITP 85

Query: 883 PQLIVLNTLAVFRVANNNLSGKIP 906
             L  L  L    + NN ++   P
Sbjct: 86  --LKNLTKLVDILMNNNQIADITP 107

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  134 bits (340), Expect = 2e-33
 Identities = 66/396 (16%), Positives = 138/396 (34%), Gaps = 35/396 (8%)

Query: 490 EIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEI 549
           EI    +      ++ ++   ++ S       +K LD+S N L+ +I          LE+
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 550 LALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKI 609
           L LS+N L         +L+ L  L L+ N  + E+    S    +  L+ ++N++S ++
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNY-VQELLVGPS----IETLHAANNNIS-RV 114

Query: 610 PRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTI--------FGTLPSCF 661
                     ++I + NN +     ++      ++ LDL  N I          +  +  
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT-- 170

Query: 662 SPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLAN 721
               +E ++L  N I   ++  +     L TLDLS N L   +         ++++ L N
Sbjct: 171 ----LEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN 223

Query: 722 NYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDAST 781
           N +   I   +   + +   DL  N           +                +  +   
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282

Query: 782 YVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLT 841
             +P++   G+   E+    F  + ++   +   L+S  G +         +  +     
Sbjct: 283 CTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE------RLECERENQA 336

Query: 842 RIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 877
           R R ++         I       +   +L+     L
Sbjct: 337 RQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKAL 372

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  128 bits (322), Expect = 3e-31
 Identities = 59/463 (12%), Positives = 131/463 (28%), Gaps = 24/463 (5%)

Query: 467 IHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLD 526
             +  +     V+ +  +      +      + +L+LS N  +    +  A    L+ L+
Sbjct: 6   KQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 527 ISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIP 586
           +S N L  E  D  ++   +L  L L+NN +      +     ++  L    N  I  + 
Sbjct: 65  LSSNVLY-ETLDLESLS--TLRTLDLNNNYV-----QELLVGPSIETLHAANNN-ISRVS 115

Query: 587 KSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEG-PIPIEFCQLDYLKI 645
            S  +      +YL++N ++       G  S ++ + +  N ++           D L+ 
Sbjct: 116 CSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 646 LDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIP 705
           L+L  N I+  +      A ++ + LS NK+   +      +  +  + L  N L   I 
Sbjct: 174 LNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIE 230

Query: 706 TWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGY 765
             +     L +  L  N       ++    K  R+  ++   +            +    
Sbjct: 231 KALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 766 HEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLS 825
           H             +   L ++      +   +  +                    ID  
Sbjct: 290 HYGAYCCEDLPAPFAD-RLIALKRKEHALLSGQGSETERLECEREN----QARQREIDAL 344

Query: 826 CNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN--LLLGKIPP 883
             +    I            L      L   +        +++         + L     
Sbjct: 345 KEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATE 404

Query: 884 QLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFL 926
           +   L  L         +  +            +        L
Sbjct: 405 EQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQL 447

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  119 bits (301), Expect = 1e-28
 Identities = 76/508 (14%), Positives = 149/508 (29%), Gaps = 82/508 (16%)

Query: 134 LNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSY 193
            N  K   +  +    ++ S      +++ L L+ N L+  I    L   + LE L++S 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 194 NAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSID 253
           N +           L +LS L+ L L+ N         L    S+  L  A+N       
Sbjct: 68  NVL------YETLDLESLSTLRTLDLNNNY-----VQELLVGPSIETLHAANNN------ 110

Query: 254 IKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCL 313
                   I RV                          + + + NN I  L    D  C 
Sbjct: 111 --------ISRVSC------------------SRGQGKKNIYLANNKITML-RDLDEGCR 143

Query: 314 RKLNTLYLGG--IAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELL 371
            ++  L L    I  ++ +   +   S  +L+ L L +       V  ++  F  L+ L 
Sbjct: 144 SRVQYLDLKLNEIDTVNFA---ELAASSDTLEHLNLQYNFI--YDVKGQV-VFAKLKTLD 197

Query: 372 LVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSH 431
           L  S   ++ +     S   + ++S+R   L             K L    +L++ DL  
Sbjct: 198 L--SSNKLAFMGPEFQSAAGVTWISLRNNKLV---------LIEKALRFSQNLEHFDLRG 246

Query: 432 LNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEI 491
                         N  ++T  +A  ++                           +P   
Sbjct: 247 NGFHCGTLRDFFSKNQRVQT--VAKQTVKKLTGQNEEECTVPTLGHYGAYCCE-DLPAP- 302

Query: 492 GTYLSGLMDLNLSRNAFN-------GSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGC 544
             +   L+ L    +A           +     +    + +D    Q    + D++ +  
Sbjct: 303 --FADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR-TVIDQVTLRK 359

Query: 545 FSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNK--FIGEIPKSLSKCYLLGGLYLSD 602
            +   L      L   + + +     L            +    +  S   LL  +    
Sbjct: 360 QAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRY 419

Query: 603 NHLSGKIPRWLGNLSALEDIIMPNNNLE 630
             +   + +     +A+ D  M  +   
Sbjct: 420 EEMY--VEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  118 bits (297), Expect = 4e-28
 Identities = 71/440 (16%), Positives = 127/440 (28%), Gaps = 67/440 (15%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSL 155
           +   ASL      ++ LDLS N ++     +    L+    L+ L L SN         L
Sbjct: 23  KQALASLRQSAWNVKELDLSGNPLSQISAAD----LAPFTKLELLNLSSNVLYE--TLDL 76

Query: 156 GGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLK 215
             LS+LR L L +N       ++ L    ++E L  + N I  +         S     K
Sbjct: 77  ESLSTLRTLDLNNNY------VQELLVGPSIETLHAANNNISRV-------SCSRGQGKK 123

Query: 216 FLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLS 275
            + L  N          G  S ++ L L  N  +                          
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-------------------------- 157

Query: 276 SWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG--IAMIDGSKVL 333
             +V       S   LE L++  N I ++   K      KL TL L    +A +      
Sbjct: 158 --TVNFAELAASSDTLEHLNLQYNFIYDV---KGQVVFAKLKTLDLSSNKLAFMGP---- 208

Query: 334 QSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLK 393
               S   +  + L        ++ + L    NLE   L  +  H   L    +    ++
Sbjct: 209 -EFQSAAGVTWISLRNNKL--VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265

Query: 394 YLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLL 453
            ++ +       +    G    +                +L   F + L+        LL
Sbjct: 266 TVAKQ------TVKKLTGQNE-EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALL 318

Query: 454 LANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIP 513
               S          +  +   +D     +R  +  ++       + L   + A +  + 
Sbjct: 319 SGQGSETERLECERENQARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVS 377

Query: 514 SSFADMKMLKSLDISYNQLT 533
           +       L           
Sbjct: 378 NGRRAHAELDGTLQQAVGQI 397

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  109 bits (274), Expect = 3e-25
 Identities = 59/395 (14%), Positives = 114/395 (28%), Gaps = 35/395 (8%)

Query: 362 HNFTNLEELLLVKSDLHVSQLLQSI-ASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYH 420
            N    +   +  +D  + Q L S+  S  ++K L + G  L               L  
Sbjct: 7   QNGNRYKIEKV--TDSSLKQALASLRQSAWNVKELDLSGNPLSQIS--------AADLAP 56

Query: 421 QHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVST 480
              L+ ++LS   L        +E+ + L+TL L NN +       +     + TL  + 
Sbjct: 57  FTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAAN 108

Query: 481 NFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRM 540
           N     +         G  ++ L+ N               ++ LD+  N++       +
Sbjct: 109 NNIS-RVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 541 AIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYL 600
           A    +LE L L  N +       +     L  L L  NK +  +         +  + L
Sbjct: 165 AASSDTLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISL 221

Query: 601 SDNHLSGKIPRWLGNLSALEDIIMPNNNLE-GPIPIEFCQLDYLKILDLSNNTIFGTLPS 659
            +N L   I + L     LE   +  N    G +   F +   ++ +             
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

Query: 660 CFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGS----IPTWIDRLPQLS 715
                     H      E            L   + +     GS    +    +   +  
Sbjct: 281 EECT-VPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQR 339

Query: 716 YLLLANNYIEGEIPIQICQ-LKEVRLIDLSHNNLS 749
            +          +  Q+    +    ++     L 
Sbjct: 340 EIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  108 bits (270), Expect = 1e-24
 Identities = 66/545 (12%), Positives = 148/545 (27%), Gaps = 114/545 (20%)

Query: 211 LSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVD 270
            +  K  ++  +S   ++ S      +++ L L+ N               + ++ +   
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP--------------LSQISAAD- 53

Query: 271 LVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGS 330
                         L   + LE L++++N +       D   L  L TL L         
Sbjct: 54  --------------LAPFTKLELLNLSSNVLYET---LDLESLSTLRTLDLNNNY----- 91

Query: 331 KVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFT 390
             +Q +   PS++TL+    N    I           + + L  + + + + L      +
Sbjct: 92  --VQELLVGPSIETLHAANNN----ISRVSCSRGQGKKNIYLANNKITMLRDL-DEGCRS 144

Query: 391 SLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLK 450
            ++YL                                DL    +       L  ++  L+
Sbjct: 145 RVQYL--------------------------------DLKLNEIDTVNFAELAASSDTLE 172

Query: 451 TLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNG 510
            L L  N ++                          +  ++    + L  L+LS N    
Sbjct: 173 HLNLQYNFIY-------------------------DVKGQV--VFAKLKTLDLSSNKLA- 204

Query: 511 SIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTN 570
            +   F     +  + +  N+L   I   +     +LE   L  N        + F   N
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFH-CGTLRDFFSKN 261

Query: 571 LMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALE----DIIMPN 626
                +          ++  +C +    +            +   L AL+     ++   
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ 321

Query: 627 NNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSP-AYIEEIHLSKNKIEGRLESIIH 685
            +    +  E       + +D         +            +   K  ++ ++ +   
Sbjct: 322 GSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRR 381

Query: 686 YSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYL-LLANNYIEGEIPIQICQLKEVRLIDLS 744
               L             +    +    L  L  +   Y E  +  Q  Q   +R  D+ 
Sbjct: 382 AHAELDGTLQQAVGQ-IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMY 440

Query: 745 HNNLS 749
            +  +
Sbjct: 441 QHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  108 bits (270), Expect = 1e-24
 Identities = 60/481 (12%), Positives = 134/481 (27%), Gaps = 53/481 (11%)

Query: 182 SLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRIL 241
           + +  +   ++ +++   +         +  N+K L L  N  +    + L   + L +L
Sbjct: 8   NGNRYKIEKVTDSSLKQALA----SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 242 SLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGIN--TGLDSLSNLEELDMTNN 299
           +L+ N               +        L +L +  +  N    L    ++E L   NN
Sbjct: 64  NLSSNV--------------LYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANN 109

Query: 300 AINNLVVPKDYRCLRKLNTLYLGG--IAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIV 357
            I+ +         +    +YL    I M+         G    ++ L L          
Sbjct: 110 NISRV----SCSRGQGKKNIYLANNKITMLRD----LDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 358 NQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKF 417
            +   +   LE L L  + ++    ++    F  LK L +    L               
Sbjct: 162 AELAASSDTLEHLNLQYNFIYD---VKGQVVFAKLKTLDLSSNKLA---------FMGPE 209

Query: 418 LYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSL-FGSFRMPIHSHQKLATL 476
                 +  + L +  L       L   + NL+   L  N    G+ R     +Q++ T+
Sbjct: 210 FQSAAGVTWISLRNNKLV-LIEKAL-RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267

Query: 477 DVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEI 536
              T      +  +     +     +                +  LK  + +     G  
Sbjct: 268 AKQTV---KKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSE 324

Query: 537 PDRMAIGCF---SLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCY 593
            +R+            +       +  I          + L+        ++        
Sbjct: 325 TERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHA 384

Query: 594 LLGGLYLSDNHLSGKIPRWLGNLSALEDIIM-PNNNLEGPIPIEFCQLDYLKILDLSNNT 652
            L G          ++       S L+ +        E  +  +  Q + ++  D+  + 
Sbjct: 385 ELDGTLQQAVGQ-IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHK 443

Query: 653 I 653
            
Sbjct: 444 E 444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.3 bits (115), Expect = 9e-06
 Identities = 13/71 (18%), Positives = 27/71 (38%)

Query: 833 IPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLA 892
           I        R +   ++ ++L   + +   +   ++ LDLS N L       L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 893 VFRVANNNLSG 903
           +  +++N L  
Sbjct: 62  LLNLSSNVLYE 72

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 1/75 (1%)

Query: 680 LESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVR 739
           +  I           ++ + L  ++ +       +  L L+ N +       +    ++ 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 740 LIDLSHNNLSGHIPP 754
           L++LS N L      
Sbjct: 62  LLNLSSNVLY-ETLD 75

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  126 bits (318), Expect = 1e-31
 Identities = 73/387 (18%), Positives = 140/387 (36%), Gaps = 47/387 (12%)

Query: 271 LVSLSSWSVGIN--TGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG--IAM 326
             +L++    IN       L+      +   ++ ++V  ++   L  +  L + G  +A 
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEE---LESITKLVVAGEKVAS 58

Query: 327 IDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSI 386
           I G      I  L +L+ L L             L N   L  L +  + +     + ++
Sbjct: 59  IQG------IEYLTNLEYLNLNGNQITDIS---PLSNLVKLTNLYIGTNKITD---ISAL 106

Query: 387 ASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENN 446
            + T+L+ L +    +               L +   + +++L   +         + N 
Sbjct: 107 QNLTNLRELYLNEDNISD----------ISPLANLTKMYSLNLGANHNLSDLSP--LSNM 154

Query: 447 TNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRN 506
           T L  L +  + +      PI +   L +L ++ N      P+     L+ L       N
Sbjct: 155 TGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQIEDISPLA---SLTSLHYFTAYVN 209

Query: 507 AFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKF 566
                 P   A+M  L SL I  N++T   P         L  L +  N +     +   
Sbjct: 210 QITDITP--VANMTRLNSLKIGNNKITDLSPLA---NLSQLTWLEIGTNQISD--INAVK 262

Query: 567 NLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPN 626
           +LT L  L +  N+ I +I   L+    L  L+L++N L  +    +G L+ L  + +  
Sbjct: 263 DLTKLKMLNVGSNQ-ISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320

Query: 627 NNLEGPIPIEFCQLDYLKILDLSNNTI 653
           N++    P+    L  +   D +N  I
Sbjct: 321 NHITDIRPLA--SLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  124 bits (315), Expect = 3e-31
 Identities = 68/414 (16%), Positives = 146/414 (35%), Gaps = 75/414 (18%)

Query: 342 LKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCV 401
             TL  L              +       +L K+ +     + +     S+  L + G  
Sbjct: 2   AATLATLPAPINQIF---PDADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEK 55

Query: 402 LKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFG 461
           +             + + +  +L+ ++L+   ++   P   + N   L  L +  N +  
Sbjct: 56  VAS----------IQGIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKI-- 100

Query: 462 SFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKM 521
                      ++ L                  L+ L +L L+ +  +   P   A++  
Sbjct: 101 ---------TDISALQ----------------NLTNLRELYLNEDNISDISP--LANLTK 133

Query: 522 LKSLDISYNQLTGEIPDRMAIG-CFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNK 580
           + SL++  N    ++     +     L  L ++ + ++        NLT+L  L L+ N+
Sbjct: 134 MYSLNLGANHNLSDLS---PLSNMTGLNYLTVTESKVKDVTPIA--NLTDLYSLSLNYNQ 188

Query: 581 FIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQL 640
            I +I   L+    L       N ++   P  + N++ L  + + NN +    P+    L
Sbjct: 189 -IEDIS-PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLA--NL 242

Query: 641 DYLKILDLSNNTI-----FGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDL 695
             L  L++  N I        L        ++ +++  N+I   +  + +    L +L L
Sbjct: 243 SQLTWLEIGTNQISDINAVKDLTK------LKMLNVGSNQISD-ISVLNNL-SQLNSLFL 294

Query: 696 SYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLS 749
           + N L       I  L  L+ L L+ N+I    P+    L ++   D ++  + 
Sbjct: 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA--SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  124 bits (313), Expect = 6e-31
 Identities = 61/335 (18%), Positives = 125/335 (37%), Gaps = 35/335 (10%)

Query: 424 LKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFF 483
                L   +++        E   ++  L++A   +  +    I     L  L+++ N  
Sbjct: 24  GIRAVLQKASVTDVVT---QEELESITKLVVAGEKV--ASIQGIEYLTNLEYLNLNGNQI 78

Query: 484 RGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIG 543
               P+     L  L +L +  N    +  S+  ++  L+ L ++ + ++   P      
Sbjct: 79  TDISPLS---NLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISPLA---N 130

Query: 544 CFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDN 603
              +  L L  N+    + S   N+T L  L +  +K + ++   ++    L  L L+ N
Sbjct: 131 LTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESK-VKDVT-PIANLTDLYSLSLNYN 187

Query: 604 HLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTI-----FGTLP 658
            +    P  L +L++L       N +    P+    +  L  L + NN I        L 
Sbjct: 188 QIEDISP--LASLTSLHYFTAYVNQITDITPV--ANMTRLNSLKIGNNKITDLSPLANLS 243

Query: 659 SCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLL 718
                  +  + +  N+I   + ++      L  L++  N +       ++ L QL+ L 
Sbjct: 244 Q------LTWLEIGTNQISD-INAV-KDLTKLKMLNVGSNQISDISV--LNNLSQLNSLF 293

Query: 719 LANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIP 753
           L NN +  E    I  L  +  + LS N+++   P
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  123 bits (311), Expect = 1e-30
 Identities = 80/450 (17%), Positives = 146/450 (32%), Gaps = 105/450 (23%)

Query: 109 LESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLAD 168
             +L      I        +   + L      +L      + +  +   L S+  L +A 
Sbjct: 2   AATLATLPAPI------NQIFPDADLAEGIRAVLQKASVTDVV--TQEELESITKLVVAG 53

Query: 169 NRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSI 228
            ++     I+G++ L+NLE L+++ N I        +  LS L  L  L +  N    + 
Sbjct: 54  EKVA---SIQGIEYLTNLEYLNLNGNQI------TDISPLSNLVKLTNLYIGTNKI--TD 102

Query: 229 FSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSL 288
            S+L  L++LR L L ++  +                                   L +L
Sbjct: 103 ISALQNLTNLRELYLNEDNISDISP-------------------------------LANL 131

Query: 289 SNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLL 348
           + +  L++  N  +NL        +  LN L +    + D    +  I +L  L +L L 
Sbjct: 132 TKMYSLNLGAN--HNLSDLSPLSNMTGLNYLTVTESKVKD----VTPIANLTDLYSLSLN 185

Query: 349 FTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHG 408
           +   +       L + T+L       + +     +  +A+ T L  L I    +      
Sbjct: 186 YNQIEDIS---PLASLTSLHYFTAYVNQITD---ITPVANMTRLNSLKIGNNKIT----- 234

Query: 409 QDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIH 468
                              DLS L            N + L  L +  N +  S    + 
Sbjct: 235 -------------------DLSPL-----------ANLSQLTWLEIGTNQI--SDINAVK 262

Query: 469 SHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDIS 528
              KL  L+V +N       +     LS L  L L+ N            +  L +L +S
Sbjct: 263 DLTKLKMLNVGSNQISDISVLN---NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319

Query: 529 YNQLTGEIPDRMAIGCFSLEILALSNNNLQ 558
            N +T   P         ++    +N  ++
Sbjct: 320 QNHITDIRPLA---SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  116 bits (294), Expect = 2e-28
 Identities = 66/364 (18%), Positives = 138/364 (37%), Gaps = 65/364 (17%)

Query: 103 FTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLR 162
               + +  L ++   +        ++ +  L NL++L L+ N   +   S L  L  L 
Sbjct: 40  QEELESITKLVVAGEKV------ASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLT 91

Query: 163 ILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYN 222
            L +  N++    DI  L +L+NL EL ++ + I        +  L+ L+ +  L L  N
Sbjct: 92  NLYIGTNKIT---DISALQNLTNLRELYLNEDNI------SDISPLANLTKMYSLNLGAN 142

Query: 223 SFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGIN 282
              S + S L  ++ L  L++ +++      I                L  L S S+  N
Sbjct: 143 HNLSDL-SPLSNMTGLNYLTVTESKVKDVTPIAN--------------LTDLYSLSLNYN 187

Query: 283 -----TGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIG 337
                + L SL++L       N I ++    +   + +LN+L +G   + D    L  + 
Sbjct: 188 QIEDISPLASLTSLHYFTAYVNQITDITPVAN---MTRLNSLKIGNNKITD----LSPLA 240

Query: 338 SLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQL--LQSIASFTSLKYL 395
           +L  L  L +             + + T L+ L     ++  +Q+  +  + + + L  L
Sbjct: 241 NLSQLTWLEIGTNQISDI---NAVKDLTKLKML-----NVGSNQISDISVLNNLSQLNSL 292

Query: 396 SIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLA 455
            +    L             + +    +L  + LS  +++   P   + + + + +   A
Sbjct: 293 FLNNNQLGNED--------MEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFA 341

Query: 456 NNSL 459
           N  +
Sbjct: 342 NQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  112 bits (283), Expect = 5e-27
 Identities = 65/341 (19%), Positives = 122/341 (35%), Gaps = 39/341 (11%)

Query: 424 LKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFF 483
              +      ++  FP     +       +L   S+     +     + +  L V+    
Sbjct: 2   AATLATLPAPINQIFP---DADLAEGIRAVLQKASVTDV--VTQEELESITKLVVAGEKV 56

Query: 484 RGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIG 543
                +E   YL+ L  LNL+ N      P   +++  L +L I  N++T +I    A+ 
Sbjct: 57  ASIQGIE---YLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS---ALQ 107

Query: 544 CF-SLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSD 602
              +L  L L+ +N+     S   NLT +  L L  N  +      LS    L  L +++
Sbjct: 108 NLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTE 164

Query: 603 NHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTI-----FGTL 657
           + +    P  + NL+ L  + +  N +E   P     L  L       N I        +
Sbjct: 165 SKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANM 220

Query: 658 PSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYL 717
                   +  + +  NKI   L  + +    L  L++  N +   I   +  L +L  L
Sbjct: 221 TR------LNSLKIGNNKITD-LSPLANL-SQLTWLEIGTNQIS-DINA-VKDLTKLKML 270

Query: 718 LLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVN 758
            + +N I     +    L ++  + L++N L       +  
Sbjct: 271 NVGSNQISDISVLN--NLSQLNSLFLNNNQLGNEDMEVIGG 309

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.8 bits (125), Expect = 6e-07
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 5/85 (5%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
           + +  NK+T    + +  LT +R L L+ +N++   P   +NL ++ SL+L  N  L  +
Sbjct: 93  LYIGTNKIT--DISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL 148

Query: 882 PPQLIVLNTLAVFRVANNNLSGKIP 906
            P L  +  L    V  + +    P
Sbjct: 149 SP-LSNMTGLNYLTVTESKVKDVTP 172

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.0 bits (123), Expect = 1e-06
 Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 816 LMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 875
           L  +  +++  N+++    + +  L+++ +L L++N L          L  + +L LS N
Sbjct: 264 LTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321

Query: 876 LLLGKIPPQLIVLNTLAVFRVANNNLS 902
            +    P  L  L+ +     AN  + 
Sbjct: 322 HITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.6 bits (122), Expect = 2e-06
 Identities = 18/85 (21%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
           +++  N+++      +  LT+++ LN+  N ++    +  +NL Q+ SL L+ N L  + 
Sbjct: 248 LEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNED 303

Query: 882 PPQLIVLNTLAVFRVANNNLSGKIP 906
              +  L  L    ++ N+++   P
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.5 bits (119), Expect = 3e-06
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
           + ++  K+       I YLT +  LNL+ N +T   P   SNL ++ +L +  N +    
Sbjct: 49  LVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TD 102

Query: 882 PPQLIVLNTLAVFRVANNNLSGKIP 906
              L  L  L    +  +N+S   P
Sbjct: 103 ISALQNLTNLRELYLNEDNISDISP 127

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.3 bits (116), Expect = 7e-06
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 816 LMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 875
           L S+       N++T   P  +  +TR+ +L + +N +T   P   +NL Q+  L++  N
Sbjct: 198 LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN 253

Query: 876 LLLGKIPPQLIVLNTLAVFRVANNNLSG 903
            +       +  L  L +  V +N +S 
Sbjct: 254 QI--SDINAVKDLTKLKMLNVGSNQISD 279

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 823 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIP 882
           +L  N    ++   +  +T +  L ++ + +    P   +NL  + SL L+YN  +  I 
Sbjct: 138 NLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN-QIEDIS 193

Query: 883 PQLIVLNTLAVFRVANNNLSGKIP 906
           P L  L +L  F    N ++   P
Sbjct: 194 P-LASLTSLHYFTAYVNQITDITP 216

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.5 bits (101), Expect = 5e-04
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
           + L+ N++    P  +  LT +       N +T   P   +N+ ++ SL +  N  +  +
Sbjct: 182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN-KITDL 236

Query: 882 PPQLIVLNTLAVFRVANNNLSG 903
            P L  L+ L    +  N +S 
Sbjct: 237 SP-LANLSQLTWLEIGTNQISD 257

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  122 bits (309), Expect = 4e-30
 Identities = 70/331 (21%), Positives = 124/331 (37%), Gaps = 30/331 (9%)

Query: 424 LKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSL----FGSFRMPIHSHQKLATLDVS 479
            K V   +  +  K P  L+++   ++ L L +  +      +F         +  L + 
Sbjct: 47  QKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFA----YAHTIQKLYMG 101

Query: 480 TNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDR 539
            N  R ++P  +   +  L  L L RN  +      F +   L +L +S N L   I D 
Sbjct: 102 FNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDD 159

Query: 540 MAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLY 599
                 SL+ L LS+N L     S    + +L    +  N        +L+    +  L 
Sbjct: 160 TFQATTSLQNLQLSSNRLTHVDLS---LIPSLFHANVSYNLL-----STLAIPIAVEELD 211

Query: 600 LSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPS 659
            S N ++  +         L  + + +NNL             L  +DLS N +   +  
Sbjct: 212 ASHNSIN-VVRG--PVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYH 266

Query: 660 CFSP-AYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLL 718
            F     +E +++S N++   L       P L  LDLS+N L   +     +  +L  L 
Sbjct: 267 PFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 324

Query: 719 LANNYIEGEIPIQICQLKEVRLIDLSHNNLS 749
           L +N I   + +       ++ + LSHN+  
Sbjct: 325 LDHNSIV-TLKLST--HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  120 bits (304), Expect = 2e-29
 Identities = 68/340 (20%), Positives = 130/340 (38%), Gaps = 23/340 (6%)

Query: 413 TFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQK 472
                L +     +V +        +  +      N K +   N+++       + S ++
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDV-YFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ 70

Query: 473 LATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQL 532
           +  L+++       I      Y   +  L +  NA     P  F ++ +L  L +  N L
Sbjct: 71  VELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129

Query: 533 TGEIPDRMAIGCFSLEILALSNNNL---QGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSL 589
           +  +P  +      L  L++SNNNL   +   F      T+L  LQL  N+ +  +  SL
Sbjct: 130 S-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ---ATTSLQNLQLSSNR-LTHVDLSL 184

Query: 590 SKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLS 649
                L    +S N LS      L    A+E++   +N++     +       L IL L 
Sbjct: 185 IPS--LFHANVSYNLLST-----LAIPIAVEELDASHNSINV---VRGPVNVELTILKLQ 234

Query: 650 NNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWID 709
           +N +        +   + E+ LS N++E  +         L  L +S N L  ++  +  
Sbjct: 235 HNNL-TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ 292

Query: 710 RLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLS 749
            +P L  L L++N++   +     Q   +  + L HN++ 
Sbjct: 293 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  112 bits (282), Expect = 1e-26
 Identities = 59/288 (20%), Positives = 110/288 (38%), Gaps = 24/288 (8%)

Query: 471 QKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYN 530
                +    +  R  +P  +      +  LNL+          +FA    ++ L + +N
Sbjct: 45  NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103

Query: 531 QLTGEIPDRMAIGCFSLEILALSNNNLQ---GHIFSKKFNLTNLMRLQLDGNKFIGEIPK 587
            +   +P  +      L +L L  N+L      IF    N   L  L +  N  +  I  
Sbjct: 104 AIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH---NTPKLTTLSMSNNN-LERIED 158

Query: 588 S-LSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKIL 646
                   L  L LS N L+  +   L  + +L    +  N L             ++ L
Sbjct: 159 DTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEEL 210

Query: 647 DLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPT 706
           D S+N+I            +  + L  N +      +++Y P L+ +DLSYN L   +  
Sbjct: 211 DASHNSINVVRGPVNV--ELTILKLQHNNLT-DTAWLLNY-PGLVEVDLSYNELEKIMYH 266

Query: 707 WIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPP 754
              ++ +L  L ++NN +   + +    +  ++++DLSHN+L  H+  
Sbjct: 267 PFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVER 312

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  107 bits (270), Expect = 5e-25
 Identities = 68/452 (15%), Positives = 140/452 (30%), Gaps = 98/452 (21%)

Query: 131 LSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELD 190
           L        + +D    +         L++ +I++  ++ +   +    LDS   +E L+
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 191 MSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNG 250
           ++   I+ +         +    ++ L + +N+           +  L +L L  N    
Sbjct: 76  LNDLQIEEI--DTYA--FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND--- 128

Query: 251 SIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDY 310
                      +  +P  +                 +   L  L M+NN +  +     +
Sbjct: 129 -----------LSSLPRGI---------------FHNTPKLTTLSMSNNNLERI-EDDTF 161

Query: 311 RCLRKLNTLYLGG--IAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLE 368
           +    L  L L    +  +D       +  +PSL    + +           L     +E
Sbjct: 162 QATTSLQNLQLSSNRLTHVD-------LSLIPSLFHANVSYNLL------STLAIPIAVE 208

Query: 369 ELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVD 428
           EL    S   ++ +         L  L ++   L          T   +L +   L  VD
Sbjct: 209 ELDA--SHNSINVV--RGPVNVELTILKLQHNNL----------TDTAWLLNYPGLVEVD 254

Query: 429 LSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIP 488
           LS+  L  K           L+ L ++NN L                           + 
Sbjct: 255 LSYNELE-KIMYHPFVKMQRLERLYISNNRL-------------------------VALN 288

Query: 489 VEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLE 548
           +     +  L  L+LS N     +  +      L++L + +N +   +         +L+
Sbjct: 289 LYGQP-IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLS---THHTLK 342

Query: 549 ILALSNNNLQGHIFSKKFNLTNLMRLQLDGNK 580
            L LS+N+      S +    N+ R  +D   
Sbjct: 343 NLTLSHNDWDC--NSLRALFRNVARPAVDDAD 372

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  100 bits (252), Expect = 8e-23
 Identities = 57/369 (15%), Positives = 120/369 (32%), Gaps = 46/369 (12%)

Query: 91  NRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNS 150
           + +++              + +    + +           L     ++ L L+       
Sbjct: 29  DMQTQDVYFGFEDITLNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDLQIEEI 84

Query: 151 IFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLST 210
              +     +++ L +  N +   +      ++  L  L +  N + +L  P+G+     
Sbjct: 85  DTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSL--PRGI--FHN 139

Query: 211 LSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVD 270
              L  L +  N+       +    +SL+ L L+ NR    +D+                
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSL-----------IPS 187

Query: 271 LVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGS 330
           L   +     ++T L     +EELD ++N+IN +          +L  L L    + D  
Sbjct: 188 LFHANVSYNLLST-LAIPIAVEELDASHNSINVV----RGPVNVELTILKLQHNNLTD-- 240

Query: 331 KVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFT 390
                + + P L  + L +   +  I+         LE L +  S+  +  L        
Sbjct: 241 --TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYI--SNNRLVALNLYGQPIP 295

Query: 391 SLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLK 450
           +LK L +    L             +       L+N+ L H ++        +  +  LK
Sbjct: 296 TLKVLDLSHNHLL---------HVERNQPQFDRLENLYLDHNSIV-TLK---LSTHHTLK 342

Query: 451 TLLLANNSL 459
            L L++N  
Sbjct: 343 NLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 99.0 bits (247), Expect = 4e-22
 Identities = 64/389 (16%), Positives = 132/389 (33%), Gaps = 52/389 (13%)

Query: 355 TIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTF 414
             ++  L       ++ +      V    + I +  + K ++ +   ++           
Sbjct: 11  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMR---------KL 60

Query: 415 PKFLYHQ-HDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSL----FGSFRMPIHS 469
           P  L      ++ ++L+ L +  +   +       ++ L +  N++       F     +
Sbjct: 61  PAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF----QN 115

Query: 470 HQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISY 529
              L  L +  N     +P  I      L  L++S N        +F     L++L +S 
Sbjct: 116 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174

Query: 530 NQLTGEIPDRM----------------AIGCFSLEILALSNNNLQGHIFSKKFNLTNLMR 573
           N+LT  +   +                     ++E L  S+N++   +         L  
Sbjct: 175 NRLT-HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPVN--VELTI 230

Query: 574 LQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPI 633
           L+L  N  + +    L     L  + LS N L   +      +  LE + + NN L   +
Sbjct: 231 LKLQHNN-LTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-L 287

Query: 634 PIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYS--PYLM 691
            +    +  LK+LDLS+N +     +      +E ++L  N I       +  S    L 
Sbjct: 288 NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI-----VTLKLSTHHTLK 342

Query: 692 TLDLSYNCLHG-SIPTWIDRLPQLSYLLL 719
            L LS+N     S+      + + +    
Sbjct: 343 NLTLSHNDWDCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 97.4 bits (243), Expect = 1e-21
 Identities = 71/463 (15%), Positives = 149/463 (32%), Gaps = 98/463 (21%)

Query: 208 LSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPS 267
           L        + +D  + +         L++ +I++  ++               + ++P+
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST--------------MRKLPA 62

Query: 268 FVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG--IA 325
            +               LDS   +E L++ +  I  +     +     +  LY+G   I 
Sbjct: 63  AL---------------LDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIR 106

Query: 326 MIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQS 385
            +          ++P L  L L   +   ++     HN   L  L +             
Sbjct: 107 YLPPH----VFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSM------------- 148

Query: 386 IASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVEN 445
             S  +L+ +              +  TF         L+N+ LS   L+    + +   
Sbjct: 149 --SNNNLERI--------------EDDTF----QATTSLQNLQLSSNRLTHVDLSLI--- 185

Query: 446 NTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSR 505
             +L    ++ N L       +     +  LD S N     +   +      L  L L  
Sbjct: 186 -PSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQH 235

Query: 506 NAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKK 565
           N    +  +   +   L  +D+SYN+L  +I     +    LE L +SNN L   +    
Sbjct: 236 NNL--TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYG 291

Query: 566 FNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMP 625
             +  L  L L  N  +  + ++  +   L  LYL  N +   +   L     L+++ + 
Sbjct: 292 QPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLS 347

Query: 626 NNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEE 668
           +N+ +             +  +++   +      C     +E 
Sbjct: 348 HNDWD-----CNSLRALFR--NVARPAVDDADQHCKIDYQLEH 383

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 96.7 bits (241), Expect = 2e-21
 Identities = 71/407 (17%), Positives = 137/407 (33%), Gaps = 77/407 (18%)

Query: 180 LDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLR 239
           L       ++ +     D     + +    TL+N K +    ++      + L     + 
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDI----TLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 240 ILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNN 299
           +L+L D +                       +  + +++            +++L M  N
Sbjct: 73  LLNLNDLQ-----------------------IEEIDTYA------FAYAHTIQKLYMGFN 103

Query: 300 AINNLVVPKDYRCLRKLNTLYLGG--IAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIV 357
           AI  L  P  ++ +  L  L L    ++ +          + P L TL +   N +  I 
Sbjct: 104 AIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNNNLE-RIE 157

Query: 358 NQELHNFTNLEELLLVKSDLHVSQLLQ-SIASFTSLKYLSIRGCVLKGALHGQDGGTFPK 416
           +      T+L+ L      L  ++L    ++   SL + ++   +L              
Sbjct: 158 DDTFQATTSLQNL-----QLSSNRLTHVDLSLIPSLFHANVSYNLL-------------S 199

Query: 417 FLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSL--FGSFRMPIHSHQKLA 474
            L     ++ +D SH +++          N  L  L L +N+L           ++  L 
Sbjct: 200 TLAIPIAVEELDASHNSIN-VVRG---PVNVELTILKLQHNNLTDTAWLL----NYPGLV 251

Query: 475 TLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTG 534
            +D+S N     I       +  L  L +S N    ++      +  LK LD+S+N L  
Sbjct: 252 EVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL- 308

Query: 535 EIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKF 581
            +  R       LE L L +N++     S       L  L L  N +
Sbjct: 309 HVE-RNQPQFDRLENLYLDHNSIVTLKLS---THHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 80.5 bits (199), Expect = 5e-16
 Identities = 47/285 (16%), Positives = 93/285 (32%), Gaps = 66/285 (23%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSL 155
             +    F     L++L LS N +           LS + +L    +  N       S+L
Sbjct: 154 ERIEDDTFQATTSLQNLQLSSNRLTHV-------DLSLIPSLFHANVSYNLL-----STL 201

Query: 156 GGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLK 215
               ++  L  + N +N  +          L  L + +N + +         L     L 
Sbjct: 202 AIPIAVEELDASHNSIN-VVRG---PVNVELTILKLQHNNLTDT------AWLLNYPGLV 251

Query: 216 FLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLS 275
            + L YN     ++     +  L  L +++NR                          L 
Sbjct: 252 EVDLSYNELEKIMYHPFVKMQRLERLYISNNR--------------------------LV 285

Query: 276 SWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG--IAMIDGSKVL 333
           +    +N     +  L+ LD+++N + ++   ++     +L  LYL    I  +      
Sbjct: 286 A----LNLYGQPIPTLKVLDLSHNHLLHV--ERNQPQFDRLENLYLDHNSIVTL------ 333

Query: 334 QSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLH 378
             + +  +LK L L   ++     N     F N+    +  +D H
Sbjct: 334 -KLSTHHTLKNLTLSHNDWDC---NSLRALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 76.6 bits (189), Expect = 9e-15
 Identities = 54/369 (14%), Positives = 115/369 (31%), Gaps = 73/369 (19%)

Query: 546 SLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKS-LSKCYLLGGLYLSDNH 604
               + +       +   +   L N   +    +  + ++P + L     +  L L+D  
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQ 80

Query: 605 LSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPA 664
           +             ++ + M  N +    P  F  +  L +L L  N             
Sbjct: 81  IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN------------- 127

Query: 665 YIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYI 724
            +  +             I H +P L TL +S N L             L  L L++N +
Sbjct: 128 DLSSLP----------RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177

Query: 725 EGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVL 784
                + +  +  +   ++S+ NL   +   +    L+  +      I+           
Sbjct: 178 TH---VDLSLIPSLFHANVSY-NLLSTLAIPIAVEELDASH----NSINVVRGPV----- 224

Query: 785 PSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIR 844
                                           + ++ + L  N LT +    +     + 
Sbjct: 225 -------------------------------NVELTILKLQHNNLT-DTAW-LLNYPGLV 251

Query: 845 ALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGK 904
            ++LS+N L   +   F  ++++E L +S N  L  +      + TL V  +++N+L   
Sbjct: 252 EVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLL-H 309

Query: 905 IPDRVAQFS 913
           +     QF 
Sbjct: 310 VERNQPQFD 318

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 6/149 (4%)

Query: 609 IPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAY-IE 667
           I   L       D+ +     +     E   L+  KI+   N+T+     +       +E
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 668 EIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWI-DRLPQLSYLLLANNYIEG 726
            ++L+  +IE        Y+  +  L + +N +   +P  +   +P L+ L+L  N +  
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS- 130

Query: 727 EIPIQI-CQLKEVRLIDLSHNNLSGHIPP 754
            +P  I     ++  + +S+NNL   I  
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLE-RIED 158

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 19/115 (16%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 816 LMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 875
           +  +  + +S N+L   +      +  ++ L+LSHN+L   +        ++E+L L +N
Sbjct: 271 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 328

Query: 876 LLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP 930
             +  +       +TL    +++N+         A F      + +     C + 
Sbjct: 329 -SIVTLKLS--THHTLKNLTLSHNDWDC--NSLRALFRNVARPAVDDADQHCKID 378

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  121 bits (305), Expect = 4e-30
 Identities = 65/352 (18%), Positives = 113/352 (32%), Gaps = 50/352 (14%)

Query: 417 FLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATL 476
             +H    +N+          + + L    +  +    A+ + + S     +S+      
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVL----SQWQRHYNADRNRWHSAWRQANSN-NPQIE 61

Query: 477 DVSTNFFRGHIPVEIGT-YLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGE 535
             +    +      +      G + L L         P     +  L+ + I    L  E
Sbjct: 62  TRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-E 118

Query: 536 IPDRMAIGCF-SLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYL 594
           +PD   +  F  LE L L+ N L+  + +   +L  L  L +     + E+P+ L+    
Sbjct: 119 LPD--TMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 595 LGG---------LYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKI 645
            G          L L    +   +P  + NL  L+ + + N+ L   +      L  L+ 
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE 233

Query: 646 LDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLS-YNCLHGSI 704
           LDL   T     P  F                G           L  L L   + L  ++
Sbjct: 234 LDLRGCTALRNYPPIF----------------GGRAP-------LKRLILKDCSNLL-TL 269

Query: 705 PTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCL 756
           P  I RL QL  L L        +P  I QL    +I +   +L   +    
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP-PHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  118 bits (299), Expect = 2e-29
 Identities = 58/345 (16%), Positives = 111/345 (32%), Gaps = 57/345 (16%)

Query: 390 TSLKYLSIRGCV-LKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTN 448
           +  + L  +G   L+          +   L       N D +  + + +  N       N
Sbjct: 12  SGRENLYFQGSTALR---------PYHDVLSQWQRHYNADRNRWHSAWRQANS-----NN 57

Query: 449 LKTLLLANNSLFGSFRMP-IHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNA 507
            +       +L  +  +    +      L++ +       P +    LS L  + +    
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAG 115

Query: 508 FNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIG-CFSLEILALSNNNL--------- 557
               +P +      L++L ++ N L   +P   +I     L  L++              
Sbjct: 116 LM-ELPDTMQQFAGLETLTLARNPLR-ALPA--SIASLNRLRELSIRACPELTELPEPLA 171

Query: 558 QGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLS 617
                 +   L NL  L+L+    I  +P S++    L  L + ++ LS  +   + +L 
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLP 229

Query: 618 ALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIE 677
            LE++ +         P  F     LK L L + +   TLP                   
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI---------------- 273

Query: 678 GRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANN 722
            RL         L  LDL        +P+ I +LP    +L+  +
Sbjct: 274 HRLTQ-------LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  108 bits (272), Expect = 1e-25
 Identities = 50/367 (13%), Positives = 104/367 (28%), Gaps = 81/367 (22%)

Query: 567 NLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPN 626
           + +    L   G+  +      LS+         +  H + +      N +  +      
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTG 65

Query: 627 NNLEG-PIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIH 685
             L+     +E         L+L +  +    P                    RL     
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPL-PQFPDQA----------------FRLSH--- 105

Query: 686 YSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSH 745
               L  + +    L   +P  + +   L  L LA N +   +P  I  L  +R + +  
Sbjct: 106 ----LQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159

Query: 746 NNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTK 805
                 +P  L +T  +  +                                        
Sbjct: 160 CPELTELPEPLASTDASGEHQG-------------------------------------- 181

Query: 806 NMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLK 865
                     L+++  + L    +   +P  I  L  +++L + ++ L+  +     +L 
Sbjct: 182 ----------LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLP 229

Query: 866 QIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPF 925
           ++E LDL     L   PP       L    + + +    +P  + + +  E+    G   
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289

Query: 926 LCGLPLS 932
           L  LP  
Sbjct: 290 LSRLPSL 296

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  106 bits (267), Expect = 5e-25
 Identities = 66/357 (18%), Positives = 107/357 (29%), Gaps = 68/357 (19%)

Query: 310 YRCLRKLNTLYLGGIAMIDGSKVLQSI-GSLPSLKTLYLLFTNFKGTIVNQELHNFTNLE 368
           +        LY        GS  L+     L   +  Y    N   +       N  N +
Sbjct: 8   HHHSSGRENLYF------QGSTALRPYHDVLSQWQRHYNADRNRWHSA--WRQANSNNPQ 59

Query: 369 ELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVD 428
                   L  +  L   A+      L +R   L           FP   +    L+++ 
Sbjct: 60  IETRTGRALKATADLLEDATQPGRVALELRSVPLP---------QFPDQAFRLSHLQHMT 110

Query: 429 LSHLNLSGKFPNWLVENNTNLKTLLLANNSL------FGSFRMPIHSHQKLATLDVSTNF 482
           +    L  + P+ + +    L+TL LA N L        S         +L  L +    
Sbjct: 111 IDAAGLM-ELPDTM-QQFAGLETLTLARNPLRALPASIASL-------NRLRELSIRACP 161

Query: 483 FRGHIPVEIG--------TYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTG 534
               +P  +           L  L  L L       S+P+S A+++ LKSL I  + L+ 
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS- 219

Query: 535 EIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYL 594
            +    AI                        +L  L  L L G   +   P        
Sbjct: 220 ALGP--AIH-----------------------HLPKLEELDLRGCTALRNYPPIFGGRAP 254

Query: 595 LGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNN 651
           L  L L D      +P  +  L+ LE + +        +P    QL    I+ +  +
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (265), Expect = 8e-25
 Identities = 37/282 (13%), Positives = 84/282 (29%), Gaps = 33/282 (11%)

Query: 494 YLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALS 553
           + SG  +L    +          +  +   + D +         +       + +I   +
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN-----NPQIETRT 64

Query: 554 NNNLQGHIFS-KKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRW 612
              L+      +       + L+L     + + P    +   L  + +    L  ++P  
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLM-ELPDT 122

Query: 613 LGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYI------ 666
           +   + LE + +  N L   +P     L+ L+ L +        LP   +          
Sbjct: 123 MQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 667 ----EEIHLSKNKIE------GRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSY 716
               + + L    I         L++       L +L +  + L  ++   I  LP+L  
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQN-------LKSLKIRNSPLS-ALGPAIHHLPKLEE 233

Query: 717 LLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVN 758
           L L         P        ++ + L   +    +P  +  
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.5 bits (220), Expect = 5e-19
 Identities = 44/343 (12%), Positives = 92/343 (26%), Gaps = 37/343 (10%)

Query: 288 LSNLEELDMTNNAINNLV-VPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLY 346
            S  E L    +    L          ++            +         +  + +   
Sbjct: 11  SSGRENLYFQGS--TALRPYHDVLSQWQRHYNADR------NRWHSAWRQANSNNPQIET 62

Query: 347 LLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGAL 406
                 K T    E         L L    + + Q        + L++++I    L    
Sbjct: 63  RTGRALKATADLLEDATQPGRVALEL--RSVPLPQFPDQAFRLSHLQHMTIDAAGLM--- 117

Query: 407 HGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSF--- 463
                   P  +     L+ + L+   L    P  +  +   L+ L +            
Sbjct: 118 ------ELPDTMQQFAGLETLTLARNPLR-ALPASI-ASLNRLRELSIRACPELTELPEP 169

Query: 464 ------RMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFA 517
                          L +L +     R  +P  I   L  L  L +  +  + ++  +  
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLS-ALGPAIH 226

Query: 518 DMKMLKSLDISYNQLTGEIPDRMAIG-CFSLEILALSNNNLQGHIFSKKFNLTNLMRLQL 576
            +  L+ LD+         P     G    L+ L L + +    +      LT L +L L
Sbjct: 227 HLPKLEELDLRGCTALRNYPP--IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284

Query: 577 DGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSAL 619
            G   +  +P  +++      + +  +  +           A 
Sbjct: 285 RGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 87.7 bits (218), Expect = 8e-19
 Identities = 62/426 (14%), Positives = 120/426 (28%), Gaps = 126/426 (29%)

Query: 109 LESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLAD 168
            E+L    +       +     LS+         +               ++ +I +   
Sbjct: 14  RENLYFQGSTALRPYHDV----LSQWQRHYNADRNRW----HSAWRQANSNNPQIETRTG 65

Query: 169 NRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSI 228
             L  + D+    +      L++    +     P    R   LS+L+ + +D       +
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLPQF--PDQAFR---LSHLQHMTIDAAGL-MEL 119

Query: 229 FSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSL 288
             ++   + L  L+LA N                        L +L +        + SL
Sbjct: 120 PDTMQQFAGLETLTLARNP-----------------------LRALPA-------SIASL 149

Query: 289 SNLEELDMTNNAINNLV-VPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYL 347
           + L EL +       L  +P+                  +  +        L +L++L L
Sbjct: 150 NRLRELSIRAC--PELTELPEP-----------------LASTDASGEHQGLVNLQSLRL 190

Query: 348 LFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALH 407
                           +T +              L  SIA+  +LK L IR   L     
Sbjct: 191 ---------------EWTGIRS------------LPASIANLQNLKSLKIRNSPLS---- 219

Query: 408 GQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPI 467
                     ++H   L+ +DL        +P         LK L+L + S   +     
Sbjct: 220 -----ALGPAIHHLPKLEELDLRGCTALRNYPPIF-GGRAPLKRLILKDCSNLLT----- 268

Query: 468 HSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDI 527
                              +P++I   L+ L  L+L        +PS  A +     + +
Sbjct: 269 -------------------LPLDIH-RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308

Query: 528 SYNQLT 533
             +   
Sbjct: 309 PPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 74.2 bits (183), Expect = 3e-14
 Identities = 45/250 (18%), Positives = 90/250 (36%), Gaps = 54/250 (21%)

Query: 107 QQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSL 166
             L+ + +    +   + +     + +   L+ L L  N    ++ +S+  L+ LR LS+
Sbjct: 104 SHLQHMTIDAAGLM-ELPDT----MQQFAGLETLTLARNPL-RALPASIASLNRLRELSI 157

Query: 167 ADNRLNGSI--------DIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLR 218
                   +               L NL+ L + +  I +L  P  +     L NLK L+
Sbjct: 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL--PASIAN---LQNLKSLK 212

Query: 219 LDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWS 278
           +  +   S++  ++  L  L  L L                +++   P            
Sbjct: 213 IRNSPL-SALGPAIHHLPKLEELDLRGC-------------TALRNYPP----------I 248

Query: 279 VGINTGLDSLSNLEELDMTNNAINNLV-VPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIG 337
            G        + L+ L + +   +NL+ +P D   L +L  L L G   +  S++   I 
Sbjct: 249 FG------GRAPLKRLILKDC--SNLLTLPLDIHRLTQLEKLDLRGCVNL--SRLPSLIA 298

Query: 338 SLPSLKTLYL 347
            LP+   + +
Sbjct: 299 QLPANCIILV 308

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.4 bits (155), Expect = 9e-11
 Identities = 36/204 (17%), Positives = 66/204 (32%), Gaps = 43/204 (21%)

Query: 107 QQLESLDLSWNNIAGCV-----ENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSL 161
            +L  L +        +       +       L NL+ L L+      S+ +S+  L +L
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL 208

Query: 162 RILSLADNRLNGSIDIKGLDSLSNLEELDMSY-NAIDNLVVPQGLERLSTLSNLKFLRLD 220
           + L + ++ L+       +  L  LEELD+    A+ N   P         + LK L L 
Sbjct: 209 KSLKIRNSPLSALGP--AIHHLPKLEELDLRGCTALRNY--P---PIFGGRAPLKRLILK 261

Query: 221 YNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVG 280
             S   ++   +  L+ L  L L                 ++ R+PS             
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDLRGC-------------VNLSRLPS------------- 295

Query: 281 INTGLDSLSNLEELDMTNNAINNL 304
               +  L     + +  +    L
Sbjct: 296 ---LIAQLPANCIILVPPHLQAQL 316

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 2/87 (2%)

Query: 823 DLS-CNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
           DL  C  L    P   G    ++ L L   +   T+P     L Q+E LDL   + L ++
Sbjct: 235 DLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

Query: 882 PPQLIVLNTLAVFRVANNNLSGKIPDR 908
           P  +  L    +  V  +  +     R
Sbjct: 294 PSLIAQLPANCIILVPPHLQAQLDQHR 320

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  123 bits (310), Expect = 8e-30
 Identities = 94/547 (17%), Positives = 183/547 (33%), Gaps = 104/547 (19%)

Query: 335 SIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKY 394
              S   L+      +N   T +  E  N  +  E     S+               +  
Sbjct: 6   RNVSNTFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEW-ERNAPPGNGEQREMAV 62

Query: 395 LSIRGCVLKGA----LHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLK 450
             +R C+ + A    L+     + P+   H   L+++  S  +L+ + P        +LK
Sbjct: 63  SRLRDCLDRQAHELELNNLGLSSLPELPPH---LESLVASCNSLT-ELPELP----QSLK 114

Query: 451 TLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNG 510
           +LL+ NN+L     +P      L  L VS N     +P E+    S L  +++  N+   
Sbjct: 115 SLLVDNNNLKALSDLP----PLLEYLGVSNNQLE-KLP-ELQ-NSSFLKIIDVDNNSLK- 166

Query: 511 SIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTN 570
            +P        L+ +    NQL  E+P+        L  +   NN+L+  +        +
Sbjct: 167 KLPDLPPS---LEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNNSLK-KLPD---LPLS 216

Query: 571 LMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLE 630
           L  +    N    E    L     L  +Y  +N L   +P    +L AL    + +N L 
Sbjct: 217 LESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALN---VRDNYLT 270

Query: 631 GPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYL 690
             +P     L +L + +   + +    P+      +  ++ S N+I     S+    P L
Sbjct: 271 D-LPELPQSLTFLDVSENIFSGLSELPPN------LYYLNASSNEIR----SLCDLPPSL 319

Query: 691 MTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSG 750
             L++S N L   +P      P+L  L+ + N++  E+P     LK+   + + +N L  
Sbjct: 320 EELNVSNNKLI-ELPALP---PRLERLIASFNHLA-EVPELPQNLKQ---LHVEYNPLR- 370

Query: 751 HIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYY 810
             P    +             +     ++    +P                         
Sbjct: 371 EFPDIPES-------------VEDLRMNSHLAEVPE------------------------ 393

Query: 811 YQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESL 870
               +  ++  + +  N L  E P     +     L ++   +            ++E  
Sbjct: 394 ----LPQNLKQLHVETNPLR-EFPDIPESVED---LRMNSERVVDPYEFAHETTDKLEDD 445

Query: 871 DLSYNLL 877
              ++  
Sbjct: 446 VFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  113 bits (285), Expect = 1e-26
 Identities = 90/462 (19%), Positives = 167/462 (36%), Gaps = 85/462 (18%)

Query: 445 NNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLS 504
           +NT L+  L  +++L     +   + +       + + +  + P   G     +    L 
Sbjct: 9   SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGE-QREMAVSRLR 66

Query: 505 RNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSK 564
                               L+++   L+  +P+        LE L  S N+L   +   
Sbjct: 67  DCLDRQ-----------AHELELNNLGLS-SLPE----LPPHLESLVASCNSLT-ELPEL 109

Query: 565 KFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIM 624
             +L +L+    +    + ++P  L        L +S+N L  K+P  L N S L+ I +
Sbjct: 110 PQSLKSLLVDNNNLKA-LSDLPPLLEY------LGVSNNQLE-KLPE-LQNSSFLKIIDV 160

Query: 625 PNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESII 684
            NN+L+  +P        L+ +   NN +   LP   +  ++  I+   N     L+ + 
Sbjct: 161 DNNSLKK-LPDLPPS---LEFIAAGNNQL-EELPELQNLPFLTAIYADNNS----LKKLP 211

Query: 685 HYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLS 744
                L ++    N L       +  LP L+ +   NN ++  +P     L+    +++ 
Sbjct: 212 DLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEA---LNVR 265

Query: 745 HNNLSGHIPPCLVN-TALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFT 803
            N L+  +P    + T L+            S        L  + PN             
Sbjct: 266 DNYLT-DLPELPQSLTFLDVSE------NIFSG-------LSELPPN-----------LY 300

Query: 804 TKNMSYYYQGRI---LMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTT 860
             N S      +     S+  +++S NKL  E+P     L R   L  S N+L   +P  
Sbjct: 301 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPEL 355

Query: 861 FSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLS 902
             NLK    L + YN L  + P     +  L +    N++L+
Sbjct: 356 PQNLK---QLHVEYNPLR-EFPDIPESVEDLRM----NSHLA 389

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  110 bits (276), Expect = 2e-25
 Identities = 83/539 (15%), Positives = 165/539 (30%), Gaps = 95/539 (17%)

Query: 211 LSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVD 270
            + L+      ++  + +      + S      A + +  +              P   +
Sbjct: 10  NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAP------------PGNGE 56

Query: 271 LVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGS 330
              ++   +             EL++ N  +++L  P+       L +L     ++   +
Sbjct: 57  QREMAVSRLRDC----LDRQAHELELNNLGLSSL--PEL---PPHLESLVASCNSL---T 104

Query: 331 KVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFT 390
           ++ +   SL SL                        LE L +  + L   + L  + + +
Sbjct: 105 ELPELPQSLKSLLVDNNNLKALSDLP--------PLLEYLGVSNNQL---EKLPELQNSS 153

Query: 391 SLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLK 450
            LK + +    LK           P        L+ +   +  L  + P   ++N   L 
Sbjct: 154 FLKIIDVDNNSLK---------KLPDLPPS---LEFIAAGNNQLE-ELPE--LQNLPFLT 198

Query: 451 TLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNG 510
            +   NNSL     +P      L ++    N        E+   L  L  +    N    
Sbjct: 199 AIYADNNSLKKLPDLP----LSLESIVAGNNIL--EELPELQN-LPFLTTIYADNNLLK- 250

Query: 511 SIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTN 570
           ++P        L++L++  N LT ++P+       SL  L +S N     +        N
Sbjct: 251 TLPDLPPS---LEALNVRDNYLT-DLPE----LPQSLTFLDVSENIFS-GLSE---LPPN 298

Query: 571 LMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLE 630
           L  L    N+ I  +         L  L +S+N L  ++P     L  L   I   N+L 
Sbjct: 299 LYYLNASSNE-IRSLCDLPPS---LEELNVSNNKLI-ELPALPPRLERL---IASFNHLA 350

Query: 631 GPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYL 690
             +P     L   K L +  N +    P            +   ++   L  +      L
Sbjct: 351 E-VPELPQNL---KQLHVEYNPL-REFPDIPE-------SVEDLRMNSHLAEVPELPQNL 398

Query: 691 MTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLS 749
             L +  N L    P   +    +  L + +  +            ++      H++  
Sbjct: 399 KQLHVETNPLR-EFPDIPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  108 bits (273), Expect = 4e-25
 Identities = 90/532 (16%), Positives = 170/532 (31%), Gaps = 101/532 (18%)

Query: 134 LNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLS--------- 184
              L+  L  S+     +      + S      A +    +      +            
Sbjct: 10  NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 185 ---NLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRIL 241
                 EL+++   + +L  P          +L+ L    NS  + +      L SL + 
Sbjct: 69  LDRQAHELELNNLGLSSL--P------ELPPHLESLVASCNSL-TELPELPQSLKSLLVD 119

Query: 242 SLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAI 301
           +      +             L V S   L  L          L + S L+ +D+ NN++
Sbjct: 120 NNNLKALSDLPP-----LLEYLGV-SNNQLEKLPE--------LQNSSFLKIIDVDNNSL 165

Query: 302 NNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQEL 361
             L  P        L  +  G   +    + L  + +LP L  +Y    + K        
Sbjct: 166 KKL--PD---LPPSLEFIAAGNNQL----EELPELQNLPFLTAIYADNNSLKKLP----- 211

Query: 362 HNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQ 421
               +LE ++   + L     L  + +   L  +     +LK         T P      
Sbjct: 212 DLPLSLESIVAGNNILEE---LPELQNLPFLTTIYADNNLLK---------TLPDLPPS- 258

Query: 422 HDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTN 481
             L+ +++    L+   P        +L  L ++ N   G   +P      L  L+ S+N
Sbjct: 259 --LEALNVRDNYLT-DLPELP----QSLTFLDVSENIFSGLSELP----PNLYYLNASSN 307

Query: 482 FFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMA 541
             R      +      L +LN+S N     +P+       L+ L  S+N L  E+P+   
Sbjct: 308 EIR-----SLCDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPELPQ 357

Query: 542 IGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLS 601
               +L+ L +  N L+        ++ +L       N  + E+P+       L  L++ 
Sbjct: 358 ----NLKQLHVEYNPLR-EFPDIPESVEDL-----RMNSHLAEVPELPQN---LKQLHVE 404

Query: 602 DNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTI 653
            N L  + P    ++  L    M +  +  P        D L+     ++  
Sbjct: 405 TNPLR-EFPDIPESVEDLR---MNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 82.7 bits (205), Expect = 1e-16
 Identities = 61/367 (16%), Positives = 122/367 (33%), Gaps = 77/367 (20%)

Query: 103 FTPFQQLESLDLSWNNIAGCVENEGVERL-SRLNNLKFLLLDSNYFNNSIFSSLGGLSSL 161
                 L+ +D+  N++         ++L     +L+F+   +N         L  L  L
Sbjct: 149 LQNSSFLKIIDVDNNSL---------KKLPDLPPSLEFIAAGNNQL--EELPELQNLPFL 197

Query: 162 RILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDY 221
             +   +N L    D        +LE +    N ++       L  L  L  L  +  D 
Sbjct: 198 TAIYADNNSLKKLPD-----LPLSLESIVAGNNILEE------LPELQNLPFLTTIYADN 246

Query: 222 NSFNSSIFSSLGGLSSLRILSLADNRFNG---------SIDIKGKQASSILRVPSFVDLV 272
           N    ++        SL  L++ DN              +D+     S +  +P   +L 
Sbjct: 247 NLL-KTLPDLPP---SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP--NLY 300

Query: 273 SLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKV 332
            L++ S  I +  D   +LEEL+++NN +  L  P       +L  L             
Sbjct: 301 YLNASSNEIRSLCDLPPSLEELNVSNNKLIEL--PA---LPPRLERLIASFNH------- 348

Query: 333 LQSI-GSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSI-ASFT 390
           L  +     +LK L++ +        N          ++     DL ++  L  +     
Sbjct: 349 LAEVPELPQNLKQLHVEY--------NP----LREFPDIPESVEDLRMNSHLAEVPELPQ 396

Query: 391 SLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLK 450
           +LK L +    L+          FP        ++++ ++   +      +  E    L+
Sbjct: 397 NLKQLHVETNPLR---------EFPDIP---ESVEDLRMNSERVV-DPYEFAHETTDKLE 443

Query: 451 TLLLANN 457
             +  ++
Sbjct: 444 DDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 42/294 (14%), Positives = 89/294 (30%), Gaps = 91/294 (30%)

Query: 610 PRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEI 669
           PR + N   L++ +  ++NL   +P+E   +        + +      P           
Sbjct: 5   PRNVSNTF-LQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAP--------PGN 54

Query: 670 HLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIP 729
              +     RL   +        L+L+   L                           +P
Sbjct: 55  GEQREMAVSRLRDCLDRQ--AHELELNNLGLS-------------------------SLP 87

Query: 730 IQICQLKEVRLIDLSHNNLSGHIPPCLVN-TALNEGYHEAVAPISSSSDDASTYVLPSVA 788
                L+    +  S N+L+  +P    +  +L               D+ +   L  + 
Sbjct: 88  ELPPHLES---LVASCNSLT-ELPELPQSLKSLLV-------------DNNNLKALSDLP 130

Query: 789 PNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNL 848
           P                             +  + +S N+L  ++P  +   + ++ +++
Sbjct: 131 PL----------------------------LEYLGVSNNQLE-KLPE-LQNSSFLKIIDV 160

Query: 849 SHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLS 902
            +N+L   +P    +L   E +    N L  +  P+L  L  L      NN+L 
Sbjct: 161 DNNSLK-KLPDLPPSL---EFIAAGNNQL--EELPELQNLPFLTAIYADNNSLK 208

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
           I    N+L  E+P ++  L  + A+   +N+L   +P    +L   ES+    N+L  + 
Sbjct: 178 IAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLSL---ESIVAGNNIL--EE 229

Query: 882 PPQLIVLNTLAVFRVANNNLSGKIPD 907
            P+L  L  L      NN L   +PD
Sbjct: 230 LPELQNLPFLTTIYADNNLLK-TLPD 254

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.0 bits (107), Expect = 1e-04
 Identities = 42/218 (19%), Positives = 72/218 (33%), Gaps = 59/218 (27%)

Query: 106 FQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILS 165
            Q L  LD+S N  +G  E           NL +L       +N I S      SL  L+
Sbjct: 276 PQSLTFLDVSENIFSGLSE--------LPPNLYYLNAS----SNEIRSLCDLPPSLEELN 323

Query: 166 LADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFN 225
           +++N+L   +          LE L  S+N +  +  P          NLK L ++YN   
Sbjct: 324 VSNNKLI-ELP----ALPPRLERLIASFNHLAEV--P------ELPQNLKQLHVEYNPLR 370

Query: 226 S--SIFSSLGGL-------------SSLRILSLADNRFNGSIDIKGKQASSILRVPSFVD 270
               I  S+  L              +L+ L +  N               +   P   +
Sbjct: 371 EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP--------------LREFPDIPE 416

Query: 271 -LVSLSSWSVGINTGLD----SLSNLEELDMTNNAINN 303
            +  L   S  +    +    +   LE+    ++  ++
Sbjct: 417 SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHHH 454

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 30/161 (18%)

Query: 101 SLFTPFQQLESLDLSWNNIAGCVENEGVERL-SRLNNLKFLLLDSNYFNNSIFSSLGGLS 159
           SL      LE L++S N +           L +    L+ L+   N+    +        
Sbjct: 311 SLCDLPPSLEELNVSNNKL---------IELPALPPRLERLIASFNHLA-EVPELPQ--- 357

Query: 160 SLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERL----------- 208
           +L+ L +  N L         D   ++E+L M+ +  +   +PQ L++L           
Sbjct: 358 NLKQLHVEYNPLR-EFP----DIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFP 412

Query: 209 STLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFN 249
               +++ LR++          +      L       +  +
Sbjct: 413 DIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 4e-04
 Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 19/98 (19%)

Query: 823 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNL-------------KQIES 869
               + LT E+P +   +        + +      P                   +Q   
Sbjct: 17  LRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHE 75

Query: 870 LDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPD 907
           L+L+    L  +P     L +L     + N+L+ ++P+
Sbjct: 76  LELNNL-GLSSLPELPPHLESL---VASCNSLT-ELPE 108

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  123 bits (311), Expect = 1e-29
 Identities = 107/500 (21%), Positives = 175/500 (35%), Gaps = 47/500 (9%)

Query: 136 NLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNA 195
               L +  NY +    S +  LS LRIL ++ NR+   +DI        LE LD+S+N 
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNK 80

Query: 196 IDNLVVPQGLERLSTLSNLKFLRLDYNSFNS-SIFSSLGGLSSLRILSLADNRFNGSIDI 254
           +  +             NLK L L +N+F++  I    G +S L+ L L+          
Sbjct: 81  LVKI-------SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE----- 128

Query: 255 KGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLR 314
             K +   +   +   ++ +   + G     + L +     +      N           
Sbjct: 129 --KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF-------- 178

Query: 315 KLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVK 374
                 L        +  L +I  +          +       N +L N T         
Sbjct: 179 ---HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235

Query: 375 SDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHL-- 432
           S + + QL+      T++ Y SI    L+G L       F  F Y    LK + +  +  
Sbjct: 236 SFIRILQLVWH----TTVWYFSISNVKLQGQLD------FRDFDYSGTSLKALSIHQVVS 285

Query: 433 NLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIG 492
           ++ G   +++ E  +N+       +       +          LD S N        E  
Sbjct: 286 DVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL-TDTVFENC 344

Query: 493 TYLSGLMDLNLSRNAFN--GSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEIL 550
            +L+ L  L L  N       I      MK L+ LDIS N ++ +          SL  L
Sbjct: 345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404

Query: 551 ALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIP 610
            +S+N L   IF        +  L L  NK I  IPK + K   L  L ++ N L   +P
Sbjct: 405 NMSSNILTDTIFRC--LPPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQLK-SVP 460

Query: 611 R-WLGNLSALEDIIMPNNNL 629
                 L++L+ I +  N  
Sbjct: 461 DGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  119 bits (300), Expect = 3e-28
 Identities = 92/500 (18%), Positives = 172/500 (34%), Gaps = 49/500 (9%)

Query: 109 LESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLAD 168
              L++S N I+    ++    +  L+ L+ L++  N       S       L  L L+ 
Sbjct: 23  TTILNISQNYISELWTSD----ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78

Query: 169 NRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSI 228
           N+L   I         NL+ LD+S+NA D L +    +    +S LKFL L       S 
Sbjct: 79  NKLV-KISC---HPTVNLKHLDLSFNAFDALPIC---KEFGNMSQLKFLGLSTTHLEKSS 131

Query: 229 FSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLS-SWSVGINTGLDS 287
              +  L+  ++L +    +    D +              D  + S       N     
Sbjct: 132 VLPIAHLNISKVLLVLGETYGEKEDPE-----------GLQDFNTESLHIVFPTNKEFHF 180

Query: 288 LSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYL 347
           + ++    + N  ++N+    +        ++          S +  +         + +
Sbjct: 181 ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI 240

Query: 348 LFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALH 407
           L   +  T+    + N     +L     D           S TSLK LSI   V      
Sbjct: 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDY----------SGTSLKALSIHQVVSD-VFG 289

Query: 408 GQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPI 467
                 +  F     ++KN  +S   +            +    L  +NN L  +     
Sbjct: 290 FPQSYIYEIF--SNMNIKNFTVSGTRM---VHMLCPSKISPFLHLDFSNNLLTDTVFENC 344

Query: 468 HSHQKLATLDVSTNFFRGHIPVEIG--TYLSGLMDLNLSRNAFNGSIPS-SFADMKMLKS 524
               +L TL +  N  +  +       T +  L  L++S+N+ +        +  K L S
Sbjct: 345 GHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403

Query: 525 LDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGE 584
           L++S N LT  I   +      +++L L +N ++  I  +   L  L  L +  N+ +  
Sbjct: 404 LNMSSNILTDTIFRCLPP---RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQ-LKS 458

Query: 585 IPK-SLSKCYLLGGLYLSDN 603
           +P     +   L  ++L  N
Sbjct: 459 VPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  114 bits (287), Expect = 1e-26
 Identities = 84/549 (15%), Positives = 171/549 (31%), Gaps = 101/549 (18%)

Query: 184 SNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSL 243
                L++S N I  L        + +LS L+ L + +N       S       L  L L
Sbjct: 21  QKTTILNISQNYISEL----WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76

Query: 244 ADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINN 303
           + N+                       LV +S              NL+ LD++ N    
Sbjct: 77  SHNK-----------------------LVKISC---------HPTVNLKHLDLSFN---- 100

Query: 304 LVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHN 363
                        + L +               G++  LK L L  T+ +       +  
Sbjct: 101 -----------AFDALPICKE-----------FGNMSQLKFLGLSTTHLE----KSSVLP 134

Query: 364 FTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHD 423
             +L    ++   L + +          L+  +     +    + +       F+     
Sbjct: 135 IAHLNISKVL---LVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE-----FHFILDVSV 186

Query: 424 LKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFF 483
               +L   N+     +       ++   L  N  L         S+  L  ++ + N F
Sbjct: 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKL---------SNLTLNNIETTWNSF 237

Query: 484 RGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFAD-----MKMLKSLDISYNQLTGEIPD 538
              I +    + + +   ++S     G +     D     +K L    +  +        
Sbjct: 238 ---IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQS 293

Query: 539 RMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGL 598
            +     ++ I   + +  +         ++  + L    N     + ++      L  L
Sbjct: 294 YIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL 353

Query: 599 YLSDNHLSGKIPRWLG---NLSALEDIIMPNNNLEGPIPIEFC-QLDYLKILDLSNNTIF 654
            L  N L  ++ +       + +L+ + +  N++        C     L  L++S+N + 
Sbjct: 354 ILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412

Query: 655 GTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIP-TWIDRLPQ 713
            T+  C  P  I+ + L  NKI+  +   +     L  L+++ N L  S+P    DRL  
Sbjct: 413 DTIFRCL-PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTS 469

Query: 714 LSYLLLANN 722
           L  + L  N
Sbjct: 470 LQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 88.4 bits (219), Expect = 3e-18
 Identities = 73/437 (16%), Positives = 146/437 (33%), Gaps = 63/437 (14%)

Query: 501 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGH 560
           LN+S+N  +    S    +  L+ L IS+N++   +   +      LE L LS+N L   
Sbjct: 26  LNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVKI 84

Query: 561 IFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGL------YLSDNHLSGKIPRWLG 614
                    NL  L L  N F      +L  C   G +       LS  HL       + 
Sbjct: 85  SCHP---TVNLKHLDLSFNAF-----DALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 615 NLSALEDIIMPNNNLEGPIPIEF---CQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIH- 670
           +L+  + +++           E       + L I+  +N      L          E+  
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 671 ----LSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWID-----RLPQLSYLLLAN 721
               L  NK    L  +          +L+ N +  +  ++I          + Y  ++N
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256

Query: 722 NYIEGEIPIQI-----CQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSS 776
             ++G++  +        LK + +  +  +      P   +    +    +         
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNF------- 307

Query: 777 DDASTYVLPSVAPNGSPIGEEETVQFTTKNMSY-------YYQGRILMSMSGIDLSCNKL 829
             + T ++  + P+           F   + S        +     L  +  + L  N+L
Sbjct: 308 TVSGTRMVHMLCPSK-------ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360

Query: 830 TGEIPTQIGY---LTRIRALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLLLGKIPPQL 885
             E+         +  ++ L++S N+++        S  K + SL++S N+L   I   L
Sbjct: 361 K-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419

Query: 886 IVLNTLAVFRVANNNLS 902
                + V  + +N + 
Sbjct: 420 --PPRIKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 80.3 bits (198), Expect = 1e-15
 Identities = 79/488 (16%), Positives = 152/488 (31%), Gaps = 53/488 (10%)

Query: 427 VDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGH 486
           VD S   L    P  L         L ++ N +   +   I S  KL  L +S N  + +
Sbjct: 5   VDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-Y 59

Query: 487 IPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCF- 545
           + + +  +   L  L+LS N     I         LK LD+S+N     +P     G   
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFD-ALPICKEFGNMS 115

Query: 546 SLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEI-PKSLSKCYL--LGGLYLSD 602
            L+ L LS  +L+        +L     L + G  +  +  P+ L       L  ++ ++
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175

Query: 603 NHLSGKIPRWLGNLSALE-----------DIIMPNNNLEGPIPIEFCQLDYLKILDLSNN 651
                 +   +  ++ LE                 + L             L  ++ + N
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235

Query: 652 TIFGTLPSCFSPAYIEEIHLSKNKIEGRLES-----IIHYSPYLMTLDLSYNCLHGSIPT 706
           +    +        +    +S  K++G+L+             L    +  +        
Sbjct: 236 SFI-RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294

Query: 707 WIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNN---LSGHIPPCLVNT---A 760
             +    ++      +       +   ++     +D S+N            L       
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354

Query: 761 LNEGYHEAVAPISSSSD--------DASTYVLPSVAPNGSPIGEEETVQFTTKNMSY--- 809
           L     + ++ I+  +         D S   +      G       T    + NMS    
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW---TKSLLSLNMSSNIL 411

Query: 810 --YYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQI 867
                  +   +  +DL  NK+   IP Q+  L  ++ LN++ N L       F  L  +
Sbjct: 412 TDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSL 470

Query: 868 ESLDLSYN 875
           + + L  N
Sbjct: 471 QKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.6 bits (165), Expect = 1e-11
 Identities = 40/228 (17%), Positives = 83/228 (36%), Gaps = 43/228 (18%)

Query: 98  LNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGG 157
             + ++  F  +   + + +              S+++    L   +N   +++F + G 
Sbjct: 291 PQSYIYEIFSNMNIKNFTVSGTRMVHMLC----PSKISPFLHLDFSNNLLTDTVFENCGH 346

Query: 158 LSSLRILSLADNRLNG-SIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKF 216
           L+ L  L L  N+L   S   +    + +L++LD+S N++            S   +L  
Sbjct: 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK---GDCSWTKSLLS 403

Query: 217 LRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSS 276
           L +  N    +IF  L     +++L L  N+                          + S
Sbjct: 404 LNMSSNILTDTIFRCL--PPRIKVLDLHSNK--------------------------IKS 435

Query: 277 WSVGINTGLDSLSNLEELDMTNNAINNLVVPKD-YRCLRKLNTLYLGG 323
               I   +  L  L+EL++ +N + +  VP   +  L  L  ++L  
Sbjct: 436 ----IPKQVVKLEALQELNVASNQLKS--VPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.3 bits (154), Expect = 2e-10
 Identities = 37/204 (18%), Positives = 70/204 (34%), Gaps = 42/204 (20%)

Query: 98  LNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNN--SIFSSL 155
           ++    +       LD S N +     +   E    L  L+ L+L  N       I    
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLT----DTVFENCGHLTELETLILQMNQLKELSKIAEMT 370

Query: 156 GGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLK 215
             + SL+ L ++ N ++            +L  L+MS N + + +             +K
Sbjct: 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL------PPRIK 424

Query: 216 FLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLS 275
            L L  N    SI   +  L +L+ L++A N+              +  VP  +      
Sbjct: 425 VLDLHSNKI-KSIPKQVVKLEALQELNVASNQ--------------LKSVPDGI------ 463

Query: 276 SWSVGINTGLDSLSNLEELDMTNN 299
                     D L++L+++ +  N
Sbjct: 464 ---------FDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 6/111 (5%)

Query: 645 ILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSI 704
           ++D S N +   +P          +++S+N I     S I     L  L +S+N +    
Sbjct: 4   LVDRSKNGLI-HVPKDL-SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 705 PTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPC 755
            +      +L YL L++N +  +I         ++ +DLS N     +P C
Sbjct: 62  ISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFD-ALPIC 108

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  118 bits (298), Expect = 2e-29
 Identities = 54/268 (20%), Positives = 105/268 (39%), Gaps = 29/268 (10%)

Query: 490 EIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEI 549
           EI    +      ++ ++   ++ S       +K LD+S N L+ +I          LE+
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 550 LALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKI 609
           L LS+N L         +L+ L  L L+ N  + E+    S    +  L+ ++N++S ++
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNY-VQELLVGPS----IETLHAANNNIS-RV 114

Query: 610 PRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTI--------FGTLPSCF 661
                     ++I + NN +     ++      ++ LDL  N I          +  +  
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT-- 170

Query: 662 SPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLAN 721
               +E ++L  N I   ++  +     L TLDLS N L   +         ++++ L N
Sbjct: 171 ----LEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN 223

Query: 722 NYIEGEIPIQICQLKEVRLIDLSHNNLS 749
           N +   I   +   + +   DL  N   
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  115 bits (291), Expect = 2e-28
 Identities = 51/309 (16%), Positives = 106/309 (34%), Gaps = 41/309 (13%)

Query: 442 LVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDL 501
           + +N    K   + ++SL                               +      + +L
Sbjct: 5   IKQNGNRYKIEKVTDSSL-------------------------KQALASLRQSAWNVKEL 39

Query: 502 NLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHI 561
           +LS N  +    +  A    L+ L++S N L  E  D  ++   +L  L L+NN +    
Sbjct: 40  DLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLDLESLS--TLRTLDLNNNYV---- 92

Query: 562 FSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALED 621
             +     ++  L    N  I  +  S  +      +YL++N ++       G  S ++ 
Sbjct: 93  -QELLVGPSIETLHAANNN-ISRVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQY 148

Query: 622 IIMPNNNLEG-PIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRL 680
           + +  N ++           D L+ L+L  N I+  +      A ++ + LS NK+   +
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FM 206

Query: 681 ESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRL 740
                 +  +  + L  N L   I   +     L +  L  N       ++    K  R+
Sbjct: 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRV 264

Query: 741 IDLSHNNLS 749
             ++   + 
Sbjct: 265 QTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  104 bits (262), Expect = 1e-24
 Identities = 52/257 (20%), Positives = 94/257 (36%), Gaps = 31/257 (12%)

Query: 511 SIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKF-NLT 569
           +I     +    K   ++ + L  +    +    ++++ L LS N L   I +      T
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLS-QISAADLAPFT 58

Query: 570 NLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNL 629
            L  L L  N  + E    L     L  L L++N++       L    ++E +   NNN+
Sbjct: 59  KLELLNLSSNV-LYETL-DLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNI 111

Query: 630 EGPIPIEFCQLDYLKILDLSNNTI-------FGTLPSCFSPAYIEEIHLSKNKIEG-RLE 681
              +     Q    K + L+NN I        G          ++ + L  N+I+     
Sbjct: 112 SR-VSCSRGQG--KKNIYLANNKITMLRDLDEGCRSR------VQYLDLKLNEIDTVNFA 162

Query: 682 SIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLI 741
            +   S  L  L+L YN ++  +   +    +L  L L++N +   +  +      V  I
Sbjct: 163 ELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWI 219

Query: 742 DLSHNNLSGHIPPCLVN 758
            L +N L   I   L  
Sbjct: 220 SLRNNKLV-LIEKALRF 235

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  102 bits (257), Expect = 7e-24
 Identities = 59/305 (19%), Positives = 98/305 (32%), Gaps = 59/305 (19%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSL 155
           +   ASL      ++ LDLS N ++     +    L+    L+ L L SN         L
Sbjct: 23  KQALASLRQSAWNVKELDLSGNPLSQISAAD----LAPFTKLELLNLSSNVLYE--TLDL 76

Query: 156 GGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLK 215
             LS+LR L L +N       ++ L    ++E L  + N I  +         S     K
Sbjct: 77  ESLSTLRTLDLNNNY------VQELLVGPSIETLHAANNNISRV-------SCSRGQGKK 123

Query: 216 FLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLS 275
            + L  N          G  S ++ L L  N  +                          
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-------------------------- 157

Query: 276 SWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG--IAMIDGSKVL 333
             +V       S   LE L++  N I ++   K      KL TL L    +A +      
Sbjct: 158 --TVNFAELAASSDTLEHLNLQYNFIYDV---KGQVVFAKLKTLDLSSNKLAFMGP---- 208

Query: 334 QSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLK 393
               S   +  + L        ++ + L    NLE   L  +  H   L    +    ++
Sbjct: 209 -EFQSAAGVTWISLRNNKL--VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265

Query: 394 YLSIR 398
            ++ +
Sbjct: 266 TVAKQ 270

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.9 bits (247), Expect = 1e-22
 Identities = 60/330 (18%), Positives = 105/330 (31%), Gaps = 70/330 (21%)

Query: 134 LNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSY 193
            N  K   +  +    ++ S      +++ L L+ N L+  I    L   + LE L++S 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 194 NAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSID 253
           N +           L +LS L+ L L+ N         L    S+  L  A+N       
Sbjct: 68  NVL------YETLDLESLSTLRTLDLNNNY-----VQELLVGPSIETLHAANNN------ 110

Query: 254 IKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCL 313
                   I RV                          + + + NN I  L    D  C 
Sbjct: 111 --------ISRVSC------------------SRGQGKKNIYLANNKITML-RDLDEGCR 143

Query: 314 RKLNTLYLGG--IAMIDGSKVLQSIGSLPSLKTLYL---LFTNFKGTIVNQELHNFTNLE 368
            ++  L L    I  ++ +   +   S  +L+ L L      + KG +       F  L+
Sbjct: 144 SRVQYLDLKLNEIDTVNFA---ELAASSDTLEHLNLQYNFIYDVKGQV------VFAKLK 194

Query: 369 ELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVD 428
            L L  S   ++ +     S   + ++S+R   L             K L    +L++ D
Sbjct: 195 TLDL--SSNKLAFMGPEFQSAAGVTWISLRNNKLV---------LIEKALRFSQNLEHFD 243

Query: 429 LSHLNLSGKFPNWLVENNTNLKTLLLANNS 458
           L                N  ++T+      
Sbjct: 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.1 bits (245), Expect = 2e-22
 Identities = 51/293 (17%), Positives = 96/293 (32%), Gaps = 28/293 (9%)

Query: 362 HNFTNLEELLLVKSDLHVSQLLQSI-ASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYH 420
            N    +   +  +D  + Q L S+  S  ++K L + G  L               L  
Sbjct: 7   QNGNRYKIEKV--TDSSLKQALASLRQSAWNVKELDLSGNPLSQIS--------AADLAP 56

Query: 421 QHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVST 480
              L+ ++LS   L        +E+ + L+TL L NN +       +     + TL  + 
Sbjct: 57  FTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAAN 108

Query: 481 NFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRM 540
           N     +         G  ++ L+ N               ++ LD+  N++       +
Sbjct: 109 NNIS-RVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 541 AIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYL 600
           A    +LE L L  N +       +     L  L L  NK +  +         +  + L
Sbjct: 165 AASSDTLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISL 221

Query: 601 SDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTI 653
            +N L   I + L     LE   +  N       +        ++  ++  T+
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 90.0 bits (224), Expect = 1e-19
 Identities = 59/326 (18%), Positives = 114/326 (34%), Gaps = 43/326 (13%)

Query: 336 IGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQ----SIASFTS 391
             +    K   +  ++ K   +     +  N++EL     DL  + L Q     +A FT 
Sbjct: 6   KQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKEL-----DLSGNPLSQISAADLAPFTK 59

Query: 392 LKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVE--NNTNL 449
           L+ L++   VL                     L    L  L+L+    N++ E     ++
Sbjct: 60  LELLNLSSNVLY---------ETLDL----ESLST--LRTLDLNN---NYVQELLVGPSI 101

Query: 450 KTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFN 509
           +TL  ANN++    R+     Q    + ++ N       ++ G   S +  L+L  N  +
Sbjct: 102 ETLHAANNNIS---RVSCSRGQGKKNIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEID 157

Query: 510 G-SIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNL 568
             +     A    L+ L++ YN +  ++  +  +    L+ L LS+N L   +  +  + 
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIY-DVKGQ--VVFAKLKTLDLSSNKLA-FMGPEFQSA 213

Query: 569 TNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLS-GKIPRWLGNLSALEDIIMPNN 627
             +  + L  NK +  I K+L     L    L  N    G +  +      ++ +     
Sbjct: 214 AGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

Query: 628 NLEGPIPIEFCQLDYLKILDLSNNTI 653
                   E C +  L          
Sbjct: 273 KKLTGQNEEECTVPTL--GHYGAYCC 296

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 89.7 bits (223), Expect = 2e-19
 Identities = 55/396 (13%), Positives = 119/396 (30%), Gaps = 88/396 (22%)

Query: 211 LSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVD 270
            +  K  ++  +S   ++ S      +++ L L+ N               + ++ +   
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP--------------LSQISAAD- 53

Query: 271 LVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGS 330
                         L   + LE L++++N +       D   L  L TL L         
Sbjct: 54  --------------LAPFTKLELLNLSSNVLYET---LDLESLSTLRTLDLNNNY----- 91

Query: 331 KVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFT 390
             +Q +   PS++TL+    N    I           + + L  + + + + L      +
Sbjct: 92  --VQELLVGPSIETLHAANNN----ISRVSCSRGQGKKNIYLANNKITMLRDL-DEGCRS 144

Query: 391 SLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLK 450
            ++YL                                DL    +       L  ++  L+
Sbjct: 145 RVQYL--------------------------------DLKLNEIDTVNFAELAASSDTLE 172

Query: 451 TLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNG 510
            L L  N +            KL TLD+S+N     +  E     +G+  ++L  N    
Sbjct: 173 HLNLQYNFI--YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLV- 227

Query: 511 SIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTN 570
            I  +    + L+  D+  N               +  +  ++   ++  +  +      
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTL--RDFFSKNQRVQTVAKQTVK-KLTGQNEEECT 284

Query: 571 LMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLS 606
           +  L   G     ++P      +    + L  +H  
Sbjct: 285 VPTLGHYGAYCCEDLPAP----FADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 81.6 bits (202), Expect = 8e-17
 Identities = 48/305 (15%), Positives = 95/305 (31%), Gaps = 45/305 (14%)

Query: 182 SLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRIL 241
           + +  +   ++ +++        L    +  N+K L L  N  +    + L   + L +L
Sbjct: 8   NGNRYKIEKVTDSSLKQA--LASL--RQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 242 SLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGIN--TGLDSLSNLEELDMTNN 299
           +L+ N               +        L +L +  +  N    L    ++E L   NN
Sbjct: 64  NLSSNV--------------LYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANN 109

Query: 300 AINNLVVPKDYRCLRKLNTLYLGG--IAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIV 357
            I+ +         +    +YL    I M+         G    ++ L L          
Sbjct: 110 NISRV----SCSRGQGKKNIYLANNKITMLRD----LDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 358 NQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKF 417
            +   +   LE L L  + ++    ++    F  LK L +    L               
Sbjct: 162 AELAASSDTLEHLNLQYNFIYD---VKGQVVFAKLKTLDLSSNKLA---------FMGPE 209

Query: 418 LYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSL-FGSFRMPIHSHQKLATL 476
                 +  + L +  L       L   + NL+   L  N    G+ R     +Q++ T+
Sbjct: 210 FQSAAGVTWISLRNNKLV-LIEKAL-RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267

Query: 477 DVSTN 481
              T 
Sbjct: 268 AKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 823 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIP 882
            ++ + L   + +       ++ L+LS N L+       +   ++E L+LS N+L     
Sbjct: 16  KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL--YET 73

Query: 883 PQLIVLNTLAVFRVANNNLS 902
             L  L+TL    + NN + 
Sbjct: 74  LDLESLSTLRTLDLNNNYVQ 93

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.0 bits (133), Expect = 5e-08
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 4/109 (3%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
           +DLS NKL   +  +      +  ++L +N L   I       + +E  DL  N      
Sbjct: 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC-G 252

Query: 882 PPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP 930
             +        V  VA   +  K+  +  +  T     + G      LP
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLP 300

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 4/100 (4%)

Query: 815 ILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTG-TIPTTFSNLKQIESLDLS 873
                  I L+ NK+T       G  +R++ L+L  N +         ++   +E L+L 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 874 YNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFS 913
           YN +   +    +V   L    +++N L+  +       +
Sbjct: 178 YNFIY-DVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAA 214

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 13/70 (18%), Positives = 27/70 (38%)

Query: 833 IPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLA 892
           I        R +   ++ ++L   + +   +   ++ LDLS N L       L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 893 VFRVANNNLS 902
           +  +++N L 
Sbjct: 62  LLNLSSNVLY 71

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 4/81 (4%)

Query: 823 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIP 882
             + N ++  +          + + L++N +T           +++ LDL  N +     
Sbjct: 105 HAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 883 PQLIV-LNTLAVFRVANNNLS 902
            +L    +TL    +  N + 
Sbjct: 162 AELAASSDTLEHLNLQYNFIY 182

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  119 bits (301), Expect = 1e-28
 Identities = 65/340 (19%), Positives = 119/340 (35%), Gaps = 27/340 (7%)

Query: 421 QHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVST 480
               + V           P  +    T  + L L  N +    +    S   L  L+++ 
Sbjct: 10  SAQDRAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNE 65

Query: 481 NFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPS-SFADMKMLKSLDISYNQLTGEIPDR 539
           N     +       L  L  L L  N     IP   F  +  L  LDIS N++   + D 
Sbjct: 66  NIVS-AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDY 122

Query: 540 MAIGCFSLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNKFIGEIPK-SLSKCYLLGG 597
           M    ++L+ L + +N+L  +I  + F  L +L +L L+    +  IP  +LS  + L  
Sbjct: 123 MFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIV 180

Query: 598 LYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTI---- 653
           L L   +++         L  L+ + + +      +         L  L +++  +    
Sbjct: 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240

Query: 654 ---FGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDR 710
                 L        +  ++LS N I     S++H    L  + L    L    P     
Sbjct: 241 YLAVRHLVY------LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294

Query: 711 LPQLSYLLLANNYIEGEIPIQICQ-LKEVRLIDLSHNNLS 749
           L  L  L ++ N +   +   +   +  +  + L  N L+
Sbjct: 295 LNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  109 bits (274), Expect = 4e-25
 Identities = 71/316 (22%), Positives = 121/316 (38%), Gaps = 43/316 (13%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSN---YFNNSIF 152
           + LN   F  F  LE L+L+ N ++  VE       + L NL+ L L SN        +F
Sbjct: 45  KTLNQDEFASFPHLEELELNENIVSA-VEPGA---FNNLFNLRTLGLRSNRLKLIPLGVF 100

Query: 153 SSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLS 212
           +   GLS+L  L +++N++   +       L NL+ L++  N +  +         S L+
Sbjct: 101 T---GLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYI--SHRA--FSGLN 152

Query: 213 NLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLV 272
           +L+ L L+  +  S    +L  L  L +L L                 + +R  SF  L 
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI------------NAIRDYSFKRLY 200

Query: 273 SLSSWSVGINTGLDSLS-------NLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG-- 323
            L    +     LD+++       NL  L +T+  +   V     R L  L  L L    
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNP 259

Query: 324 IAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLL 383
           I+ I+GS     +  L  L+ + L+       +          L  L +  + L   +  
Sbjct: 260 ISTIEGS----MLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLE-E 313

Query: 384 QSIASFTSLKYLSIRG 399
               S  +L+ L +  
Sbjct: 314 SVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  103 bits (258), Expect = 3e-23
 Identities = 77/359 (21%), Positives = 127/359 (35%), Gaps = 62/359 (17%)

Query: 106 FQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILS 165
             +   LDL  N I    ++E     +   +L+ L L+ N  +     +   L +LR L 
Sbjct: 31  PTETRLLDLGKNRIKTLNQDE----FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLG 86

Query: 166 LADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFN 225
           L  NRL   I +     LSNL +LD+S N I  L     +     L NLK L +  N   
Sbjct: 87  LRSNRLK-LIPLGVFTGLSNLTKLDISENKIVIL--LDYM--FQDLYNLKSLEVGDNDLV 141

Query: 226 SSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGL 285
                +  GL+SL  L+L                  +  +P+                 L
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCN--------------LTSIPTEA---------------L 172

Query: 286 DSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTL 345
             L  L  L + +  IN +     ++ L +L  L +     +    +  +     +L +L
Sbjct: 173 SHLHGLIVLRLRHLNINAI-RDYSFKRLYRLKVLEISHWPYL--DTMTPNCLYGLNLTSL 229

Query: 346 YLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSI-ASFTSLKYLSIRGCVLKG 404
            +   N    +    + +   L  L L  S   +S +  S+      L+ + + G  L  
Sbjct: 230 SITHCNLT-AVPYLAVRHLVYLRFLNL--SYNPISTIEGSMLHELLRLQEIQLVGGQLA- 285

Query: 405 ALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSG----KFPNWLVENNTNLKTLLLANNSL 459
            +       F         L    L  LN+SG         +  +  NL+TL+L +N L
Sbjct: 286 VVE---PYAF-------RGLNY--LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 99.8 bits (249), Expect = 4e-22
 Identities = 80/404 (19%), Positives = 135/404 (33%), Gaps = 107/404 (26%)

Query: 184 SNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSL 243
           +    LD+  N I  L      +  ++  +L+ L L+ N  ++    +   L +LR L L
Sbjct: 32  TETRLLDLGKNRIKTL----NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87

Query: 244 ADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINN 303
             NR              +  +P  V                  LSNL +LD++ N I  
Sbjct: 88  RSNR--------------LKLIPLGV---------------FTGLSNLTKLDISENKIVI 118

Query: 304 LVVPKDYRCLRKLNTLYLGG--IAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQEL 361
           L +   ++ L  L +L +G   +  I      ++   L SL+ L  L      +I  + L
Sbjct: 119 L-LDYMFQDLYNLKSLEVGDNDLVYISH----RAFSGLNSLEQLT-LEKCNLTSIPTEAL 172

Query: 362 HNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQ 421
            +   L  L L    L+++ +     SF  L                             
Sbjct: 173 SHLHGLIVLRL--RHLNINAI--RDYSFKRL----------------------------- 199

Query: 422 HDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTN 481
           + LK +++SH           +    NL +L + + +L                  V   
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNL----------------TAVPYL 242

Query: 482 FFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMA 541
             R          L  L  LNLS N  +    S   ++  L+ + +   QL   +     
Sbjct: 243 AVRH---------LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAF 292

Query: 542 IGCFSLEILALSNNN---LQGHIFSKKFNLTNLMRLQLDGNKFI 582
            G   L +L +S N    L+  +F    ++ NL  L LD N   
Sbjct: 293 RGLNYLRVLNVSGNQLTTLEESVFH---SVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 93.6 bits (233), Expect = 4e-20
 Identities = 70/390 (17%), Positives = 137/390 (35%), Gaps = 80/390 (20%)

Query: 523 KSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNKF 581
           +++     +    +P+ +        +L L  N ++  +   +F +  +L  L+L+ N  
Sbjct: 14  RAVLCHRKRFV-AVPEGIPT---ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENI- 67

Query: 582 IGEI-PKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQL 640
           +  + P + +  + L  L L  N L          LS L  + +  N +   +   F  L
Sbjct: 68  VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127

Query: 641 DYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCL 700
             LK L++ +N +       FS                 L S       L  L L    L
Sbjct: 128 YNLKSLEVGDNDLVYISHRAFSG----------------LNS-------LEQLTLEKCNL 164

Query: 701 HGSIPT-WIDRLPQLSYLLLANNYIEGEIPIQICQ-LKEVRLIDLSHNNLSGHIPPCLVN 758
             SIPT  +  L  L  L L +  I   I     + L  ++++++SH      + P  + 
Sbjct: 165 T-SIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222

Query: 759 ----TALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGR 814
               T+L+  +      +++         +P +A                          
Sbjct: 223 GLNLTSLSITH----CNLTA---------VPYLAVRH----------------------- 246

Query: 815 ILMSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLS 873
            L+ +  ++LS N ++  I   +   L R++ + L    L    P  F  L  +  L++S
Sbjct: 247 -LVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304

Query: 874 YNLLLGKIPPQLIV-LNTLAVFRVANNNLS 902
            N  L  +   +   +  L    + +N L+
Sbjct: 305 GN-QLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 74.0 bits (182), Expect = 8e-14
 Identities = 27/154 (17%), Positives = 54/154 (35%), Gaps = 9/154 (5%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSL 155
             +    F    +L+ L++S       +            NL  L +         + ++
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPN----CLYGLNLTSLSITHCNLTAVPYLAV 244

Query: 156 GGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLK 215
             L  LR L+L+ N ++ +I+   L  L  L+E+ +    +  +           L+ L+
Sbjct: 245 RHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVV--EPYA--FRGLNYLR 299

Query: 216 FLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFN 249
            L +  N   +   S    + +L  L L  N   
Sbjct: 300 VLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 3/95 (3%)

Query: 816 LMSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSY 874
           L S+  + L    LT  IPT+   +L  +  L L H N+      +F  L +++ L++S+
Sbjct: 151 LNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209

Query: 875 NLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRV 909
              L  + P  +    L    + + NL+  +P   
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLA 243

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 8e-06
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
           +     +    +P  I   T  R L+L  N +       F++   +E L+L+ N ++  +
Sbjct: 16  VLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAV 71

Query: 882 PPQ-LIVLNTLAVFRVANNNLSGKIPDRV 909
            P     L  L    + +N L   IP  V
Sbjct: 72  EPGAFNNLFNLRTLGLRSNRLK-LIPLGV 99

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 8e-06
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
           +DL  N++      +      +  L L+ N ++   P  F+NL  + +L L  N  L  I
Sbjct: 37  LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLI 95

Query: 882 PPQLIV-LNTLAVFRVANNNLSGKIPDRV 909
           P  +   L+ L    ++ N +   + D +
Sbjct: 96  PLGVFTGLSNLTKLDISENKIV-ILLDYM 123

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 823 DLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
            L  N+L   IP  +   L+ +  L++S N +   +   F +L  ++SL++  N  L  I
Sbjct: 86  GLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYI 143

Query: 882 PPQLIV-LNTLAVFRVANNNLSGKIPDRV 909
             +    LN+L    +   NL+  IP   
Sbjct: 144 SHRAFSGLNSLEQLTLEKCNLT-SIPTEA 171

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  120 bits (301), Expect = 3e-28
 Identities = 70/337 (20%), Positives = 125/337 (37%), Gaps = 42/337 (12%)

Query: 424 LKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSL----FGSFRMPIHSHQKLATLDVS 479
            K V   +  +  K P  L+++   ++ L L +  +      +F         +  L + 
Sbjct: 53  QKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFA----YAHTIQKLYMG 107

Query: 480 TNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDR 539
            N  R ++P  +   +  L  L L RN  +      F +   L +L +S N L   I D 
Sbjct: 108 FNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDD 165

Query: 540 MAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLY 599
                 SL+ L LS+N L     S    + +L    +  N        +L+    +  L 
Sbjct: 166 TFQATTSLQNLQLSSNRLTHVDLS---LIPSLFHANVSYNLL-----STLAIPIAVEELD 217

Query: 600 LSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTI------ 653
            S N ++  +         L  + + +NNL             L  +DLS N +      
Sbjct: 218 ASHNSIN-VVRG--PVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYH 272

Query: 654 -FGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLP 712
            F  +        +E +++S N++   L       P L  LDLS+N L   +     +  
Sbjct: 273 PFVKMQR------LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD 324

Query: 713 QLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLS 749
           +L  L L +N I     +++     ++ + LSHN+  
Sbjct: 325 RLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  119 bits (299), Expect = 6e-28
 Identities = 67/329 (20%), Positives = 128/329 (38%), Gaps = 23/329 (6%)

Query: 424 LKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFF 483
             +V +        +  +      N K +   N+++       + S +++  L+++    
Sbjct: 29  FYDVHIDMQTQDV-YFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 87

Query: 484 RGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIG 543
              I      Y   +  L +  NA     P  F ++ +L  L +  N L+  +P  +   
Sbjct: 88  E-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHN 145

Query: 544 CFSLEILALSNNNLQ---GHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYL 600
              L  L++SNNNL+      F      T+L  LQL  N+ +  +  SL     L    +
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQ---ATTSLQNLQLSSNR-LTHVDLSLIP--SLFHANV 199

Query: 601 SDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSC 660
           S N LS      L    A+E++   +N++     +       L IL L +N +       
Sbjct: 200 SYNLLS-----TLAIPIAVEELDASHNSINV---VRGPVNVELTILKLQHNNLT-DTAWL 250

Query: 661 FSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLA 720
            +   + E+ LS N++E  +         L  L +S N L  ++  +   +P L  L L+
Sbjct: 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLS 309

Query: 721 NNYIEGEIPIQICQLKEVRLIDLSHNNLS 749
           +N++   +     Q   +  + L HN++ 
Sbjct: 310 HNHLL-HVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  111 bits (278), Expect = 3e-25
 Identities = 59/288 (20%), Positives = 110/288 (38%), Gaps = 24/288 (8%)

Query: 471 QKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYN 530
                +    +  R  +P  +      +  LNL+          +FA    ++ L + +N
Sbjct: 51  NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109

Query: 531 QLTGEIPDRMAIGCFSLEILALSNNNLQ---GHIFSKKFNLTNLMRLQLDGNKFIGEIPK 587
            +   +P  +      L +L L  N+L      IF    N   L  L +  N  +  I  
Sbjct: 110 AIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH---NTPKLTTLSMSNNN-LERIED 164

Query: 588 S-LSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKIL 646
                   L  L LS N L+  +   L  + +L    +  N L             ++ L
Sbjct: 165 DTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEEL 216

Query: 647 DLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPT 706
           D S+N+I            +  + L  N +      +++Y P L+ +DLSYN L   +  
Sbjct: 217 DASHNSINVVRGPVNV--ELTILKLQHNNLT-DTAWLLNY-PGLVEVDLSYNELEKIMYH 272

Query: 707 WIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPP 754
              ++ +L  L ++NN +   + +    +  ++++DLSHN+L  H+  
Sbjct: 273 PFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVER 318

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  107 bits (269), Expect = 3e-24
 Identities = 77/525 (14%), Positives = 159/525 (30%), Gaps = 109/525 (20%)

Query: 131 LSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELD 190
           L        + +D    +         L++ +I++  ++ +   +    LDS   +E L+
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 81

Query: 191 MSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNG 250
           ++   I+ +         +    ++ L + +N+           +  L +L L  N    
Sbjct: 82  LNDLQIEEI--DTYA--FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND--- 134

Query: 251 SIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDY 310
                      +  +P  +                 +   L  L M+NN +  +     +
Sbjct: 135 -----------LSSLPRGI---------------FHNTPKLTTLSMSNNNLERI-EDDTF 167

Query: 311 RCLRKLNTLYLGG--IAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLE 368
           +    L  L L    +  +D       +  +PSL    + +           L     +E
Sbjct: 168 QATTSLQNLQLSSNRLTHVD-------LSLIPSLFHANVSYNLL------STLAIPIAVE 214

Query: 369 ELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVD 428
           EL    S   ++ +         L  L ++   L          T   +L +   L  VD
Sbjct: 215 ELDA--SHNSINVV--RGPVNVELTILKLQHNNL----------TDTAWLLNYPGLVEVD 260

Query: 429 LSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIP 488
           LS+  L  K           L+ L ++NN L                           + 
Sbjct: 261 LSYNELE-KIMYHPFVKMQRLERLYISNNRL-------------------------VALN 294

Query: 489 VEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLE 548
           +     +  L  L+LS N     +  +      L++L + +N +   +         +L+
Sbjct: 295 LYGQP-IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLS---THHTLK 348

Query: 549 ILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGK 608
            L LS+N+      S +    N+ R  +D         +     Y L             
Sbjct: 349 NLTLSHNDWDC--NSLRALFRNVARPAVDDA------DQHCKIDYQLEHGLCCKESDKPY 400

Query: 609 IPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTI 653
           + R L  + AL  ++      +G         D +  +   ++ I
Sbjct: 401 LDRLLQYI-ALTSVVEKVQRAQGRCS----ATDTINSVQSLSHYI 440

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  102 bits (256), Expect = 1e-22
 Identities = 69/501 (13%), Positives = 155/501 (30%), Gaps = 47/501 (9%)

Query: 91  NRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNS 150
           + +++              + +    + +           L     ++ L L+       
Sbjct: 35  DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL----LDSFRQVELLNLNDLQIEEI 90

Query: 151 IFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLST 210
              +     +++ L +  N +   +      ++  L  L +  N + +L  P+G+     
Sbjct: 91  DTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSL--PRGI--FHN 145

Query: 211 LSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVD 270
              L  L +  N+       +    +SL+ L L+ NR    +D+                
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLS-----------LIPS 193

Query: 271 LVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGS 330
           L   +     ++T L     +EELD ++N+IN +          +L  L L    + D  
Sbjct: 194 LFHANVSYNLLST-LAIPIAVEELDASHNSINVV----RGPVNVELTILKLQHNNLTD-- 246

Query: 331 KVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFT 390
                + + P L  + L +   +  I+         LE L +  S+  +  L        
Sbjct: 247 --TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYI--SNNRLVALNLYGQPIP 301

Query: 391 SLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLK 450
           +LK L +    L             +       L+N+ L H ++     +        LK
Sbjct: 302 TLKVLDLSHNHLL---------HVERNQPQFDRLENLYLDHNSIVTLKLSTH----HTLK 348

Query: 451 TLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNG 510
            L L++N    +    +  +     +D +    +    +E G          L R     
Sbjct: 349 NLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYI 408

Query: 511 SIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTN 570
           ++ S    ++  +    + + +         I       L   N  L+  +   +  +  
Sbjct: 409 ALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQ-GNEQLEAEVNELRAEVQQ 467

Query: 571 LMRLQLDGNKFIGEIPKSLSK 591
           L   Q+   + +  +   +  
Sbjct: 468 LTNEQIQQEQLLQGLHAEIDT 488

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  101 bits (253), Expect = 3e-22
 Identities = 73/500 (14%), Positives = 156/500 (31%), Gaps = 69/500 (13%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSL 155
           R L A+L   F+Q+E L+L+   I            +  + ++ L +  N          
Sbjct: 64  RKLPAALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVF 119

Query: 156 GGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLK 215
             +  L +L L  N L+ S+      +   L  L MS N ++ +            ++L+
Sbjct: 120 QNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERI--EDDT--FQATTSLQ 174

Query: 216 FLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLS 275
            L+L  N   + +   L  + SL   +++ N  +                 +    +++ 
Sbjct: 175 NLQLSSNRL-THV--DLSLIPSLFHANVSYNLLS-----------------TLAIPIAVE 214

Query: 276 SWSVGINT----GLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG--IAMIDG 329
                 N+           L  L + +N + +            L  + L    +  I  
Sbjct: 215 ELDASHNSINVVRGPVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMY 271

Query: 330 SKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASF 389
                    +  L+ LY+         +N        L+ L L  S  H+  + ++   F
Sbjct: 272 H----PFVKMQRLERLYISNNRL--VALNLYGQPIPTLKVLDL--SHNHLLHVERNQPQF 323

Query: 390 TSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLS-----GKFPNW--- 441
             L+ L +    +          T          LKN+ LSH +         F N    
Sbjct: 324 DRLENLYLDHNSIVTL----KLSTHHT-------LKNLTLSHNDWDCNSLRALFRNVARP 372

Query: 442 -LVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMD 500
            + + + + K      + L        +  + L  + +++               S    
Sbjct: 373 AVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVV---EKVQRAQGRCSATDT 429

Query: 501 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGH 560
           +N  ++  +         ++  + L+   N+L  E+           ++L   +  +  +
Sbjct: 430 INSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTN 489

Query: 561 IFSKKFNLTNLMRLQLDGNK 580
           +   +     L R   + NK
Sbjct: 490 LRRYRLPKDGLARSSDNLNK 509

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 83.8 bits (207), Expect = 1e-16
 Identities = 69/480 (14%), Positives = 142/480 (29%), Gaps = 79/480 (16%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSL 155
             +    F     L++L LS N +           LS + +L    +  N       S+L
Sbjct: 160 ERIEDDTFQATTSLQNLQLSSNRLTHV-------DLSLIPSLFHANVSYNLL-----STL 207

Query: 156 GGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLK 215
               ++  L  + N +N  +          L  L + +N + +         L     L 
Sbjct: 208 AIPIAVEELDASHNSIN-VVR---GPVNVELTILKLQHNNLTDT------AWLLNYPGLV 257

Query: 216 FLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLS 275
            + L YN     ++     +  L  L +++NR                          L 
Sbjct: 258 EVDLSYNELEKIMYHPFVKMQRLERLYISNNR--------------------------LV 291

Query: 276 SWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG--IAMIDGSKVL 333
           +    +N     +  L+ LD+++N + ++   ++     +L  LYL    I  +      
Sbjct: 292 A----LNLYGQPIPTLKVLDLSHNHLLHV--ERNQPQFDRLENLYLDHNSIVTLK----- 340

Query: 334 QSIGSLPSLKTLYL------------LFTN-FKGTIVNQELHNFTNLEELLLVKSDLHVS 380
             + +  +LK L L            LF N  +  + + + H   + +    +       
Sbjct: 341 --LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDK 398

Query: 381 QLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQ-HDLKNVDLSHLNLSGKFP 439
             L  +  + +L  +  +    +G     D     + L H       V L          
Sbjct: 399 PYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEV 458

Query: 440 NWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLM 499
           N L      L    +    L       I ++ +   L             ++ T+L    
Sbjct: 459 NELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQ 518

Query: 500 DLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQG 559
              L           + A  K  + L+     L  ++ ++ A      +  +L    ++ 
Sbjct: 519 AFKLRET--QARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQ 576

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 82.3 bits (203), Expect = 3e-16
 Identities = 52/321 (16%), Positives = 109/321 (33%), Gaps = 49/321 (15%)

Query: 598 LYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTL 657
           +   ++ +       L +   +E + + +  +E      F     ++ L +  N I    
Sbjct: 56  VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 115

Query: 658 PSCFSP-AYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSY 716
           P  F     +  + L +N +      I H +P L TL +S N L             L  
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 175

Query: 717 LLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSS 776
           L L++N +   + +    +  +   ++S+N LS  +   +    L+  +      I+   
Sbjct: 176 LQLSSNRLT-HVDLS--LIPSLFHANVSYNLLS-TLAIPIAVEELDASH----NSINVVR 227

Query: 777 DDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQ 836
                                                   + ++ + L  N LT +    
Sbjct: 228 GPV------------------------------------NVELTILKLQHNNLT-DTAW- 249

Query: 837 IGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRV 896
           +     +  ++LS+N L   +   F  ++++E L +S N  L  +      + TL V  +
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDL 308

Query: 897 ANNNLSGKIPDRVAQFSTFEE 917
           ++N+L   +     QF   E 
Sbjct: 309 SHNHLL-HVERNQPQFDRLEN 328

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.7 bits (121), Expect = 2e-06
 Identities = 19/117 (16%), Positives = 45/117 (38%), Gaps = 7/117 (5%)

Query: 816 LMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 875
           +  +  + +S N+L   +      +  ++ L+LSHN+L   +        ++E+L L +N
Sbjct: 277 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 334

Query: 876 LLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLS 932
             +  +       +TL    +++N+         A F      + +     C +   
Sbjct: 335 -SIVTLKLS--THHTLKNLTLSHNDWDC--NSLRALFRNVARPAVDDADQHCKIDYQ 386

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  111 bits (279), Expect = 2e-25
 Identities = 98/509 (19%), Positives = 182/509 (35%), Gaps = 69/509 (13%)

Query: 136 NLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNA 195
             K L L  N  +      +  LS LR+L L+ NR+  S+D        +LE LD+S+N 
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNR 111

Query: 196 IDNLVVPQGLERLSTLSNLKFLRLDYNSFNS-SIFSSLGGLSSLRILSLADNRFNGSIDI 254
           + N+           +++L+ L L +N F+   +    G L+ L  L L+  +       
Sbjct: 112 LQNI--SCC-----PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK------- 157

Query: 255 KGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLR 314
                    ++                   L  +++L    +  + ++  +   +   L+
Sbjct: 158 -------FRQLD------------------LLPVAHLHLSCILLDLVSYHIKGGETESLQ 192

Query: 315 KLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVK 374
             NT  L  +   +    +Q   S+ +L  L L           + +   + L     + 
Sbjct: 193 IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252

Query: 375 SDLHVSQ--------LLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKN 426
           +               L        ++YL+I    +             +F Y +  LK+
Sbjct: 253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITER------IDREEFTYSETALKS 306

Query: 427 VDLSHL--NLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFR 484
           + + H+   +       L      +   +L+ +       +   S      L+ + N F 
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF- 365

Query: 485 GHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSF---ADMKMLKSLDISYNQLTGEIPDRMA 541
                +  + L  L  L L RN    +         +M  L++LD+S N L     DR  
Sbjct: 366 TDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424

Query: 542 IGCFSLEILALSNNNLQGHIFSKKFNLT-NLMRLQLDGNKFIGEIPKSLSKCYLLGGLYL 600
               S+ +L LS+N L G +F     L   +  L L  N+ I  IPK ++    L  L +
Sbjct: 425 AWAESILVLNLSSNMLTGSVFRC---LPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNV 480

Query: 601 SDNHLSGKIPR-WLGNLSALEDIIMPNNN 628
           + N L   +P      L++L+ I + +N 
Sbjct: 481 ASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 98.8 bits (246), Expect = 2e-21
 Identities = 98/492 (19%), Positives = 179/492 (36%), Gaps = 53/492 (10%)

Query: 109 LESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSN---YFNNSIFSSLGGLSSLRILS 165
            ++L LS N+I+          +S L+ L+ L L  N     +  +F        L  L 
Sbjct: 54  TKALSLSQNSIS--ELRMPD--ISFLSELRVLRLSHNRIRSLDFHVFLFNQ---DLEYLD 106

Query: 166 LADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFN 225
           ++ NRL  +I       +++L  LD+S+N  D L  P   +    L+ L FL L    F 
Sbjct: 107 VSHNRL-QNI---SCCPMASLRHLDLSFNDFDVL--PVC-KEFGNLTKLTFLGLSAAKFR 159

Query: 226 SSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGL 285
                 L  ++ L +  +  +    S  IKG +  S+    + V  +     S+      
Sbjct: 160 QL---DLLPVAHLHLSCILLD--LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVN 214

Query: 286 DSLSNLEELDMTNNAINN------LVVPKDYRCLRKLNTLYLGGIAMIDGSKV-LQSIGS 338
            S++ L  L ++N  +N+      +    +      L  + L  I       V L     
Sbjct: 215 MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274

Query: 339 LPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIAS-FTSLKYLSI 397
              ++ L +         +++E   ++      L+   +     L S  + ++    ++I
Sbjct: 275 PRPVEYLNIYNLTITE-RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333

Query: 398 RGCVLKGALHGQDGGTFPK-FLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLAN 456
           +       L   D                 ++ +  N+              L+TL+L  
Sbjct: 334 K------MLSISDTPFIHMVCPPSPSSFTFLNFTQ-NVFTDSVFQGCSTLKRLQTLILQR 386

Query: 457 N---SLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIP 513
           N   + F    M   +   L TLDVS N    H       +   ++ LNLS N   GS+ 
Sbjct: 387 NGLKNFFKVALMT-KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445

Query: 514 SSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQ---GHIFSKKFNLTN 570
                   +K LD+  N++   IP  +     +L+ L +++N L+     +F     LT+
Sbjct: 446 RCLP--PKVKVLDLHNNRIM-SIPKDVT-HLQALQELNVASNQLKSVPDGVFD---RLTS 498

Query: 571 LMRLQLDGNKFI 582
           L  + L  N + 
Sbjct: 499 LQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 96.9 bits (241), Expect = 7e-21
 Identities = 86/481 (17%), Positives = 160/481 (33%), Gaps = 62/481 (12%)

Query: 285 LDSLSNLEELDMTNNAINNLVVPKD-YRCLRKLNTLYLGGIAMIDGSKVLQSI--GSLPS 341
           +  LS L  L +++N I +L      +   + L  L +           LQ+I    + S
Sbjct: 72  ISFLSELRVLRLSHNRIRSL--DFHVFLFNQDLEYLDVS-------HNRLQNISCCPMAS 122

Query: 342 LKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCV 401
           L+ L L F +F    V +E  N T L  L      L  ++  + +     + +L +   +
Sbjct: 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFL-----GLSAAKF-RQL-DLLPVAHLHLSCIL 175

Query: 402 LKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLK----TLLLANN 457
           L    +   GG           + ++     +L     N  V    +L+     L   N 
Sbjct: 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC 235

Query: 458 SLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYL--SGLMDLNLSRNAFNGSIPSS 515
               +F   +     L  + +          V++  +     +  LN+        I   
Sbjct: 236 QRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDRE 295

Query: 516 FAD-----MKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTN 570
                   +K L    +          + +      + I  LS ++          + ++
Sbjct: 296 EFTYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSS 354

Query: 571 LMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLS--GKIPRWLGNLSALEDIIMPNNN 628
              L    N F   + +  S    L  L L  N L    K+     N+S+LE + +  N+
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414

Query: 629 LE-GPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYS 687
           L            + + +L+LS+N + G++  C  P                        
Sbjct: 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK----------------------- 451

Query: 688 PYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQ-LKEVRLIDLSHN 746
             +  LDL  N +  SIP  +  L  L  L +A+N ++  +P  +   L  ++ I L  N
Sbjct: 452 --VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

Query: 747 N 747
            
Sbjct: 508 P 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 79.1 bits (195), Expect = 3e-15
 Identities = 71/468 (15%), Positives = 147/468 (31%), Gaps = 51/468 (10%)

Query: 447 TNLKTLLLANNSL----FGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLN 502
              K L L+ NS+                +L  L +S N  R  +   +  +   L  L+
Sbjct: 52  PRTKALSLSQNSISELRMPDI----SFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLD 106

Query: 503 LSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCF-SLEILALSNNNLQGHI 561
           +S N    +I      M  L+ LD+S+N     +P     G    L  L LS    +  +
Sbjct: 107 VSHNRL-QNIS--CCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFR-QL 161

Query: 562 FSKKFNLTNLMRLQLD-GNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALE 620
                   +L  + LD  +  I        +      L+L  +  S    +   +++AL 
Sbjct: 162 DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG 221

Query: 621 DIIMPNNNLEG-------PIPIEFCQLDYLKILDLSNNTI----FGTLPSCFSPAYIEEI 669
            + + N  L             E  +   L  + L +          L   F P  +E +
Sbjct: 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281

Query: 670 HLSKNKIEGRLESIIHYS-----PYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYI 724
           ++    I  R++             LM   +       S         +++  +L+ +  
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341

Query: 725 EGEIPIQICQLKEVRLIDLSHNNLS---GHIPPCLVNTALNEGYH---EAVAPISSSSDD 778
                +          ++ + N  +         L             +    ++  + +
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN 401

Query: 779 ASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQG----------RILMSMSGIDLSCNK 828
            S+     V+ N       +      +++                 +   +  +DL  N+
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNR 461

Query: 829 LTGEIPTQIGYLTRIRALNLSHNNLTGTIPT-TFSNLKQIESLDLSYN 875
           +   IP  + +L  ++ LN++ N L  ++P   F  L  ++ + L  N
Sbjct: 462 IM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 64.9 bits (158), Expect = 9e-11
 Identities = 58/362 (16%), Positives = 108/362 (29%), Gaps = 35/362 (9%)

Query: 425 KNVDLSHLNLSGKFPNWLVE----NNTNLKTLLLANNSLFGSFRMPIHSH----QKLATL 476
            N DL +L++S    N L         +L+ L L+ N       +P+        KL  L
Sbjct: 98  FNQDLEYLDVSH---NRLQNISCCPMASLRHLDLSFNDFD---VLPVCKEFGNLTKLTFL 151

Query: 477 DVSTNFFRGHIPVEIGTYLS-GLMDLNLSRNAFNGSIPSSFADMKMLK-SLDISYNQLTG 534
            +S   FR  + +    +L    + L+L      G    S          L    N L  
Sbjct: 152 GLSAAKFR-QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFS 210

Query: 535 EIPDRMAIGCFSLEILALSNNNLQGHIFSKKFN--LTNLMRLQLDGNKFIGEIPKSLS-- 590
              +        L++  +  N+          +        L +           S+   
Sbjct: 211 VQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF 270

Query: 591 ---KCYLLGGLYLSDNHLSGKIPR-----WLGNLSALEDIIMPNNNLEGPIPIEFCQLDY 642
                  +  L + +  ++ +I R         L +L    + N          +     
Sbjct: 271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE 330

Query: 643 LKILDLSNNTIFGTLPSCF-SPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLH 701
           + I  LS +        C  SP+    ++ ++N     +         L TL L  N L 
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

Query: 702 GSIPTWIDRLPQLSYLLLANNYI----EGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLV 757
            +          +S L   +  +               + + +++LS N L+G +  CL 
Sbjct: 391 -NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP 449

Query: 758 NT 759
             
Sbjct: 450 PK 451

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 64.1 bits (156), Expect = 1e-10
 Identities = 67/425 (15%), Positives = 142/425 (33%), Gaps = 70/425 (16%)

Query: 501 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGH 560
           L+LS+N+ +       + +  L+ L +S+N++   +   + +    LE L +S+N LQ  
Sbjct: 57  LSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNI 115

Query: 561 IFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALE 620
                  + +L  L L  N F       L  C   G                  NL+ L 
Sbjct: 116 SCCP---MASLRHLDLSFNDF-----DVLPVCKEFG------------------NLTKLT 149

Query: 621 DIIMPNNNLEGPIPIEFCQLDYLKI----LDLSNNTIFGTLPSCFSPAYIEEIHLSKNK- 675
            + +          ++   + +L +    LDL +  I G             +HL  +  
Sbjct: 150 FLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN 206

Query: 676 --IEGRLESIIHYSPYLMTLDLSYNCLHG----SIPTWIDRLPQLSYLLLANNYIEGEIP 729
                ++   ++   +L   ++  N  +     +  + + R P L  + L +     +  
Sbjct: 207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266

Query: 730 IQICQ-LKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVA 788
           +++ Q      +  L+  NL+            +E   +++  I    +    +   ++ 
Sbjct: 267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSL-MIEHVKNQVFLFSKEAL- 324

Query: 789 PNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNL 848
                                     +   M+   LS +             +    LN 
Sbjct: 325 ------------------------YSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNF 360

Query: 849 SHNNLTGTIPTTFSNLKQIESLDLSYNLL--LGKIPPQLIVLNTLAVFRVANNNLSGKIP 906
           + N  T ++    S LK++++L L  N L    K+      +++L    V+ N+L+    
Sbjct: 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY 420

Query: 907 DRVAQ 911
           DR   
Sbjct: 421 DRTCA 425

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 63.7 bits (155), Expect = 2e-10
 Identities = 56/390 (14%), Positives = 112/390 (28%), Gaps = 43/390 (11%)

Query: 523 KSLDISYNQLT---GEIPDRMAIGCFSLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDG 578
             +D S   LT    ++P          + L+LS N++   +       L+ L  L+L  
Sbjct: 34  SMVDYSNRNLTHVPKDLPP-------RTKALSLSQNSIS-ELRMPDISFLSELRVLRLSH 85

Query: 579 NKFIGEIPKSL-SKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEG-PIPIE 636
           N+ I  +   +      L  L +S N L   I      +++L  + +  N+ +  P+  E
Sbjct: 86  NR-IRSLDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHLDLSFNDFDVLPVCKE 141

Query: 637 FCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLS 696
           F  L  L  L LS                +  +HLS   ++     I       +     
Sbjct: 142 FGNLTKLTFLGLSAAKF-----RQLDLLPVAHLHLSCILLDLVSYHIKGGETESL----- 191

Query: 697 YNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCL 756
                      I     L  +   N+    ++ + +  L  ++L ++  N+ +       
Sbjct: 192 ----------QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF 241

Query: 757 VNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFT----TKNMSYYYQ 812
           ++          V      +    +  L        P+        T         + Y 
Sbjct: 242 LSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYS 300

Query: 813 GRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDL 872
              L S+    +                  +    LS ++          +      L+ 
Sbjct: 301 ETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNF 360

Query: 873 SYNLLLGKIPPQLIVLNTLAVFRVANNNLS 902
           + N+    +      L  L    +  N L 
Sbjct: 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 58.3 bits (141), Expect = 8e-09
 Identities = 32/153 (20%), Positives = 64/153 (41%), Gaps = 13/153 (8%)

Query: 98  LNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSL-G 156
                 +  ++L++L L  N +      +       +++L+ L +  N  N+  +     
Sbjct: 368 SVFQGCSTLKRLQTLILQRNGLKNF--FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA 425

Query: 157 GLSSLRILSLADNRLNGSIDIKGLDSL-SNLEELDMSYNAIDNLVVPQGLERLSTLSNLK 215
              S+ +L+L+ N L GS+       L   ++ LD+  N I ++  P+ +  L     L+
Sbjct: 426 WAESILVLNLSSNMLTGSV----FRCLPPKVKVLDLHNNRIMSI--PKDVTHLQ---ALQ 476

Query: 216 FLRLDYNSFNSSIFSSLGGLSSLRILSLADNRF 248
            L +  N   S        L+SL+ + L DN +
Sbjct: 477 ELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  109 bits (275), Expect = 2e-25
 Identities = 92/452 (20%), Positives = 155/452 (34%), Gaps = 81/452 (17%)

Query: 136 NLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNA 195
           ++ ++ L  N       +S   L  L+ L +        I       LS+L  L + YN 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 196 IDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFS--SLGGLSSLRILSLADNRFNGSID 253
              L    G    + L+NL+ L L   + + ++ S      L+SL +L L DN       
Sbjct: 91  FLQL--ETGA--FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI----- 141

Query: 254 IKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCL 313
                   I     F                  ++     LD+T N + ++   +D    
Sbjct: 142 ------KKIQPASFF-----------------LNMRRFHVLDLTFNKVKSI-CEEDLLNF 177

Query: 314 RKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLV 373
           +  +   L   ++        ++  +      +    N         L    N  +  + 
Sbjct: 178 QGKHFTLLRLSSI--------TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA 229

Query: 374 KSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLN 433
           K         +  +   S  Y               D  TF         +K  DLS   
Sbjct: 230 KRFFDAIAGTKIQSLILSNSYNMGSSFG-HTNFKDPDNFTFKGL--EASGVKTCDLSKSK 286

Query: 434 LSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGT 493
           +       +  + T+L+ L LA N +            K+       N F G        
Sbjct: 287 IF-ALLKSVFSHFTDLEQLTLAQNEI-----------NKI-----DDNAFWG-------- 321

Query: 494 YLSGLMDLNLSRNAFNGSIPS-SFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILAL 552
            L+ L+ LNLS+N   GSI S  F ++  L+ LD+SYN +   + D+  +G  +L+ LAL
Sbjct: 322 -LTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELAL 378

Query: 553 SNNNLQ---GHIFSKKFNLTNLMRLQLDGNKF 581
             N L+     IF     LT+L ++ L  N +
Sbjct: 379 DTNQLKSVPDGIFD---RLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 95.6 bits (238), Expect = 1e-20
 Identities = 75/432 (17%), Positives = 147/432 (34%), Gaps = 61/432 (14%)

Query: 511 SIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKF-NLT 569
            +P   A    +  +D+S N +  E+ +        L+ L +        I +  F  L+
Sbjct: 24  QVPELPAH---VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 570 NLMRLQLDGNKFIGEIPKS-LSKCYLLGGLYLSDNHL-SGKIPR-WLGNLSALEDIIMPN 626
           +L+ L+LD N+   ++     +    L  L L+  +L    +   +   L++LE +++ +
Sbjct: 80  SLIILKLDYNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138

Query: 627 NNLEGPIP-IEFCQLDYLKILDLSNNTIFGTLPSCF---SPAYIEEIHLSKNKIEGRLES 682
           NN++   P   F  +    +LDL+ N +              +   + LS   +      
Sbjct: 139 NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITL------ 192

Query: 683 IIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLID 742
                      D++   L         +   ++ L L+ N  +  +  +         I 
Sbjct: 193 ----------QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ 242

Query: 743 LSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQF 802
               + S ++     +T   +                      +    G      +T   
Sbjct: 243 SLILSNSYNMGSSFGHTNFKD--------------------PDNFTFKGLEASGVKTCDL 282

Query: 803 TTKNMSYYYQG--RILMSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPT 859
           +   +    +        +  + L+ N++  +I       LT +  LNLS N L      
Sbjct: 283 SKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341

Query: 860 TFSNLKQIESLDLSYNLLLGKIPPQLIV-LNTLAVFRVANNNLSGKIPDRVAQFSTFEED 918
            F NL ++E LDLSYN  +  +  Q  + L  L    +  N L   +PD +  F      
Sbjct: 342 MFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLK-SVPDGI--FDRLTSL 397

Query: 919 SY---EGNPFLC 927
                  NP+ C
Sbjct: 398 QKIWLHTNPWDC 409

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 92.1 bits (229), Expect = 1e-19
 Identities = 64/364 (17%), Positives = 130/364 (35%), Gaps = 50/364 (13%)

Query: 427 VDLSHLNLSG----KFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSH-QKLATLDVSTN 481
             +++++LS     +          +L+ L +   +     R         L  L +  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 482 FFRGHIPVEIGTYLSGLMDLNLSRNAFNGSI--PSSFADMKMLKSLDISYNQLTGEIPDR 539
            F   +       L+ L  L L++   +G++   + F  +  L+ L +  N +    P  
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 540 MAIGCFSLEILALSNNNLQ---GHIFSK-------KFNLTNLMRLQLDGNKFIGEIPKSL 589
             +      +L L+ N ++                   L+++    ++      E   + 
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 590 SKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDII-------------MPNNNLEGPIPIE 636
            K   +  L LS N     + +   +  A   I                + N + P    
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268

Query: 637 FCQLDY--LKILDLSNN-------TIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYS 687
           F  L+   +K  DLS +       ++F           +E++ L++N+I    ++     
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTD------LEQLTLAQNEINKIDDNAFWGL 322

Query: 688 PYLMTLDLSYNCLHGSIPTWI-DRLPQLSYLLLANNYIEGEIPIQICQ-LKEVRLIDLSH 745
            +L+ L+LS N L GSI + + + L +L  L L+ N+I   +  Q    L  ++ + L  
Sbjct: 323 THLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDT 380

Query: 746 NNLS 749
           N L 
Sbjct: 381 NQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 88.6 bits (220), Expect = 2e-18
 Identities = 75/412 (18%), Positives = 137/412 (33%), Gaps = 44/412 (10%)

Query: 330 SKVLQSIGSLP-SLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIAS 388
           ++ L  +  LP  +  + L   +    +         +L+ L + +    +     +   
Sbjct: 19  NRGLHQVPELPAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG 77

Query: 389 FTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKF-PNWLVENNT 447
            +SL  L +        L     G F        +L+ + L+  NL G        +  T
Sbjct: 78  LSSLIILKLDYNQFL-QLET---GAFNGLA----NLEVLTLTQCNLDGAVLSGNFFKPLT 129

Query: 448 NLKTLLLANNSLF-----GSFRMPIHSHQKLATLDVSTN---------FFRGHIPVEIGT 493
           +L+ L+L +N++        F     + ++   LD++ N                     
Sbjct: 130 SLEMLVLRDNNIKKIQPASFF----LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185

Query: 494 YLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALS 553
            LS +   +++          +      + +LD+S N     +  R        +I +L 
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245

Query: 554 NNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWL 613
            +N      S             D   F G     +          LS + +   +    
Sbjct: 246 LSNSYNMGSSFGHTN----FKDPDNFTFKGLEASGVKT------CDLSKSKIFALLKSVF 295

Query: 614 GNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSC-FSP-AYIEEIHL 671
            + + LE + +  N +       F  L +L  L+LS N + G++ S  F     +E + L
Sbjct: 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDL 354

Query: 672 SKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWI-DRLPQLSYLLLANN 722
           S N I    +      P L  L L  N L  S+P  I DRL  L  + L  N
Sbjct: 355 SYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 88.3 bits (219), Expect = 2e-18
 Identities = 62/388 (15%), Positives = 118/388 (30%), Gaps = 88/388 (22%)

Query: 496 SGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNN 555
           + +  ++LS N+      +SF+ ++ L+ L +        I +    G  SL IL L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 556 NLQGHIFSKKF-NLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLG 614
                + +  F  L NL  L L                       L    LS     +  
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCN-------------------LDGAVLS---GNFFK 126

Query: 615 NLSALEDIIMPNNNLEGPIP-IEFCQLDYLKILDLSNNTIFGTLPSCF---SPAYIEEIH 670
            L++LE +++ +NN++   P   F  +    +LDL+ N +              +   + 
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186

Query: 671 LSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPI 730
           LS   +                 D++   L         +   ++ L L+ N  +  +  
Sbjct: 187 LSSITL----------------QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230

Query: 731 QICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPN 790
           +         I     + S ++     +T   +                      +    
Sbjct: 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD--------------------PDNFTFK 270

Query: 791 GSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLS 849
           G      +T                       DLS +K+   +   +  + T +  L L+
Sbjct: 271 GLEASGVKTC----------------------DLSKSKIF-ALLKSVFSHFTDLEQLTLA 307

Query: 850 HNNLTGTIPTTFSNLKQIESLDLSYNLL 877
            N +       F  L  +  L+LS N L
Sbjct: 308 QNEINKIDDNAFWGLTHLLKLNLSQNFL 335

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 83.6 bits (207), Expect = 7e-17
 Identities = 81/472 (17%), Positives = 148/472 (31%), Gaps = 115/472 (24%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSL 155
             LN + F+  Q L+ L +        + N        L++L  L LD N F      + 
Sbjct: 43  AELNETSFSRLQDLQFLKVEQQTPGLVIRNNT---FRGLSSLIILKLDYNQFLQLETGAF 99

Query: 156 GGLSSLRILSLADNRLNGS-IDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNL 214
            GL++L +L+L    L+G+ +       L++LE L +  N I  +  P        +   
Sbjct: 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI-QPASF--FLNMRRF 156

Query: 215 KFLRLDYNSFNS---SIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDL 271
             L L +N   S       +  G     +L L+                        ++ 
Sbjct: 157 HVLDLTFNKVKSICEEDLLNFQGK-HFTLLRLSSITL------------------QDMNE 197

Query: 272 VSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYR--CLRKLNTLYLGGIAMIDG 329
             L     G        +++  LD++ N     +  + +      K+ +L L     +  
Sbjct: 198 YWLGWEKCGN---PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254

Query: 330 SKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSI--A 387
           S    +     +     L                 + ++       DL  S+ + ++  +
Sbjct: 255 SFGHTNFKDPDNFTFKGL---------------EASGVKTC-----DLSKSK-IFALLKS 293

Query: 388 SFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNT 447
            F+                                DL+ + L+   ++ K  +      T
Sbjct: 294 VFSHFT-----------------------------DLEQLTLAQNEIN-KIDDNAFWGLT 323

Query: 448 NLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNA 507
           +L  L L+ N               L ++D     F           L  L  L+LS N 
Sbjct: 324 HLLKLNLSQN--------------FLGSIDSRM--FEN---------LDKLEVLDLSYNH 358

Query: 508 FNGSIPS-SFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQ 558
              ++   SF  +  LK L +  NQL   +PD +     SL+ + L  N   
Sbjct: 359 I-RALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 77.5 bits (191), Expect = 7e-15
 Identities = 73/394 (18%), Positives = 130/394 (32%), Gaps = 71/394 (18%)

Query: 95  ERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFS- 153
              +  + F     L  L L +N         G    + L NL+ L L     + ++ S 
Sbjct: 67  GLVIRNNTFRGLSSLIILKLDYNQFLQL--ETGA--FNGLANLEVLTLTQCNLDGAVLSG 122

Query: 154 -SLGGLSSLRILSLADNRLNGSIDIKGL-DSLSNLEELDMSYNAIDNL-------VVPQG 204
                L+SL +L L DN +   I       ++     LD+++N + ++          + 
Sbjct: 123 NFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKH 181

Query: 205 LERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFN-----------GSID 253
              L  LS++    ++          +    +S+  L L+ N F                
Sbjct: 182 FTLLR-LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK 240

Query: 254 IKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCL 313
           I+    S+   + S     +          GL++ S ++  D++ + I  L +   +   
Sbjct: 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA-SGVKTCDLSKSKIFAL-LKSVFSHF 298

Query: 314 RKLNTLYLGG--IAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELL 371
             L  L L    I  ID      +   L  L  L  L  NF G+I ++   N   LE L 
Sbjct: 299 TDLEQLTLAQNEINKIDD----NAFWGLTHLLKLN-LSQNFLGSIDSRMFENLDKLEVL- 352

Query: 372 LVKSDLHVSQLLQSI-----ASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKN 426
               DL  +  ++++         +LK L++    LK        G F         L +
Sbjct: 353 ----DLSYNH-IRALGDQSFLGLPNLKELALDTNQLKSVPD----GIF-------DRLTS 396

Query: 427 VDLSHLNLSG-----------KFPNWLVENNTNL 449
             L  + L                 WL +N+   
Sbjct: 397 --LQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE 428

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 72.5 bits (178), Expect = 2e-13
 Identities = 55/313 (17%), Positives = 101/313 (32%), Gaps = 54/313 (17%)

Query: 91  NRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFN-- 148
                  L+ + F P   LE L L  NNI   ++         +     L L  N     
Sbjct: 113 CNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASF--FLNMRRFHVLDLTFNKVKSI 169

Query: 149 -NSIFSSLGGLSSLRILSLADNRLN-------GSIDIKGLDSLSNLEELDMSYNAIDNLV 200
                 +  G     +L L+   L        G          +++  LD+S N     +
Sbjct: 170 CEEDLLNFQGK-HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228

Query: 201 VPQ-----GLERLSTL----SNLKFLRLDYNSFNSSIFSSLGGL--SSLRILSLADNRFN 249
             +        ++ +L    S        + +F      +  GL  S ++   L+ ++  
Sbjct: 229 AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI- 287

Query: 250 GSIDIKGKQASSILRVPSFVDLVSLSSWSVGIN-------TGLDSLSNLEELDMTNNAIN 302
                        L    F     L   ++  N            L++L +L+++ N + 
Sbjct: 288 -----------FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336

Query: 303 NLVVPKD-YRCLRKLNTLYLGG--IAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQ 359
           ++      +  L KL  L L    I  +      QS   LP+LK L L     K ++ + 
Sbjct: 337 SI--DSRMFENLDKLEVLDLSYNHIRALGD----QSFLGLPNLKELALDTNQLK-SVPDG 389

Query: 360 ELHNFTNLEELLL 372
                T+L+++ L
Sbjct: 390 IFDRLTSLQKIWL 402

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  107 bits (268), Expect = 2e-24
 Identities = 81/519 (15%), Positives = 147/519 (28%), Gaps = 117/519 (22%)

Query: 135 NNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYN 194
           +N    +  +     +   S   L++L  L   ++ +    D+ G++ L+ L +L  + N
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSN 74

Query: 195 AIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDI 254
            I  L        LS  +NL +L  D N   +     +  L+ L  L+   N+    +D+
Sbjct: 75  NITTLD-------LSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLT-KLDV 123

Query: 255 KGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLR 314
                                               L  L+   N +  +    D     
Sbjct: 124 SQ-------------------------------NPLLTYLNCARNTLTEI----DVSHNT 148

Query: 315 KLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVK 374
           +L  L       I        +     L TL   F      I   ++     L  L    
Sbjct: 149 QLTELDCHLNKKIT----KLDVTPQTQLTTLDCSFNK----ITELDVSQNKLLNRLNC-- 198

Query: 375 SDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNL 434
              ++++L   +     L +L                           D  +  L+ +++
Sbjct: 199 DTNNITKL--DLNQNIQLTFL---------------------------DCSSNKLTEIDV 229

Query: 435 SGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTY 494
           +           T L     + N L     + + +  KL TL          I +   T+
Sbjct: 230 T---------PLTQLTYFDCSVNPL---TELDVSTLSKLTTLHCIQTDLL-EIDL---TH 273

Query: 495 LSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSN 554
            + L+                      L  LD     +T E+          L  L L+N
Sbjct: 274 NTQLIYFQAEGC--RKIKELDVTHNTQLYLLDCQAAGIT-ELDLS---QNPKLVYLYLNN 327

Query: 555 NNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLG 614
             L     S   + T L  L       I +   S+ K   L   + ++          L 
Sbjct: 328 TELTELDVS---HNTKLKSLSCVNAH-IQDFS-SVGKIPALNNNFEAEGQTITMPKETLT 382

Query: 615 NLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTI 653
           N S    +    + L+        +     + D + NTI
Sbjct: 383 NNSLTIAV--SPDLLDQFGNPMNIEPGDGGVYDQATNTI 419

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 90.5 bits (225), Expect = 5e-19
 Identities = 69/479 (14%), Positives = 139/479 (29%), Gaps = 112/479 (23%)

Query: 94  SERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFS 153
             +  +         L SLD   ++I        +  + +L  L  L+      +N+I +
Sbjct: 29  EMQATDTISEEQLATLTSLDCHNSSI------TDMTGIEKLTGLTKLICT----SNNITT 78

Query: 154 -SLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLS 212
             L   ++L  L+   N+L  ++D+     L+ L  L+   N +  L        +S   
Sbjct: 79  LDLSQNTNLTYLACDSNKLT-NLDVTP---LTKLTYLNCDTNKLTKLD-------VSQNP 127

Query: 213 NLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLV 272
            L +L    N+        +   + L  L    N+    +D+  +   + L   SF  + 
Sbjct: 128 LLTYLNCARNTLTE---IDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDC-SFNKIT 183

Query: 273 SLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG--IAMIDGS 330
            L          +     L  L+   N I  L    D     +L  L      +  ID  
Sbjct: 184 ELD---------VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLTEID-- 228

Query: 331 KVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFT 390
                +  L  L             +   ++   + L  L        + ++   +   T
Sbjct: 229 -----VTPLTQLTYFDCSVNP----LTELDVSTLSKLTTLHC--IQTDLLEI--DLTHNT 275

Query: 391 SLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLK 450
            L Y    G                             +  L+++         +NT L 
Sbjct: 276 QLIYFQAEG--------------------------CRKIKELDVT---------HNTQLY 300

Query: 451 TLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNG 510
            L      +     + +  + KL  L ++       + V   ++ + L  L+        
Sbjct: 301 LLDCQAAGI---TELDLSQNPKLVYLYLNNTELT-ELDV---SHNTKLKSLSCVNAHIQ- 352

Query: 511 SIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLT 569
               S   +  L +   +  Q              ++    L+NN+L   +     +  
Sbjct: 353 DFS-SVGKIPALNNNFEAEGQTI------------TMPKETLTNNSLTIAVSPDLLDQF 398

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 87.8 bits (218), Expect = 3e-18
 Identities = 83/471 (17%), Positives = 132/471 (28%), Gaps = 95/471 (20%)

Query: 289 SNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG--IAMIDGSKVLQSIGSLPSLKTLY 346
            N          +           L  L +L      I  + G      I  L  L  L 
Sbjct: 18  DNFASEVAAAFEMQATD-TISEEQLATLTSLDCHNSSITDMTG------IEKLTGLTKLI 70

Query: 347 LLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQ-SIASFTSLKYLSIRGCVLKGA 405
               N    I   +L   TNL  L         ++L    +   T L YL+     L   
Sbjct: 71  CTSNN----ITTLDLSQNTNLTYL-----ACDSNKLTNLDVTPLTKLTYLNCDTNKLT-- 119

Query: 406 LHGQDGGTFPKFLYHQHDLKNVDLSHLNLSG-KFPNWLVENNTNLKTLLLANNSLFGSFR 464
                              +N  L++LN +        V +NT L  L    N       
Sbjct: 120 --------------KLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITK-- 163

Query: 465 MPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKS 524
           + +    +L TLD S N     + V   +    L  LN   N     +         L  
Sbjct: 164 LDVTPQTQLTTLDCSFNKIT-ELDV---SQNKLLNRLNCDTNNIT-KLD--LNQNIQLTF 216

Query: 525 LDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGE 584
           LD S N+LT EI          L     S N L     S    L+ L  L       + E
Sbjct: 217 LDCSSNKLT-EIDVT---PLTQLTYFDCSVNPLTELDVS---TLSKLTTLHCIQTD-LLE 268

Query: 585 IPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLK 644
           I   L+    L            ++   + + + L  +      +     ++  Q   L 
Sbjct: 269 ID--LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLV 321

Query: 645 ILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSI 704
            L L+N               + E+ +S N               L +L      +    
Sbjct: 322 YLYLNNT-------------ELTELDVSHN-------------TKLKSLSCVNAHI-QDF 354

Query: 705 PTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEV------RLIDLSHNNLS 749
            + + ++P L+    A       +P +      +       L+D   N ++
Sbjct: 355 SS-VGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLDQFGNPMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 87.4 bits (217), Expect = 4e-18
 Identities = 73/447 (16%), Positives = 141/447 (31%), Gaps = 78/447 (17%)

Query: 446 NTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSR 505
           + N  + + A   +  +  +       L +LD   +       +E    L+GL  L  + 
Sbjct: 17  DDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIE---KLTGLTKLICTS 73

Query: 506 NAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKK 565
           N    ++    +    L  L    N+LT  +          L  L    N L     S  
Sbjct: 74  NNIT-TLD--LSQNTNLTYLACDSNKLT-NLDVT---PLTKLTYLNCDTNKLTKLDVS-- 124

Query: 566 FNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMP 625
                L  L    N  + EI   +S    L  L    N    K+   +   + L  +   
Sbjct: 125 -QNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCS 178

Query: 626 NNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIH 685
            N +     ++  Q   L  L+   N              I ++ L++N           
Sbjct: 179 FNKITE---LDVSQNKLLNRLNCDTN-------------NITKLDLNQN----------- 211

Query: 686 YSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSH 745
               L  LD S N L   I   +  L QL+Y   + N +     + +  L ++  +    
Sbjct: 212 --IQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQ 263

Query: 746 NNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTY-VLPSVAPNGSPIGEEETVQFTT 804
            +L   I     NT L     E    I       +T   L                  T 
Sbjct: 264 TDLL-EIDL-THNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAA----------GITE 311

Query: 805 KNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNL 864
            ++S          +  + L+  +LT E+   + + T++++L+  + ++      +   +
Sbjct: 312 LDLSQ------NPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFS-SVGKI 360

Query: 865 KQIESLDLSYNLLLGKIPPQLIVLNTL 891
             + +   +    +  +P + +  N+L
Sbjct: 361 PALNNNFEAEGQTI-TMPKETLTNNSL 386

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 28/207 (13%), Positives = 56/207 (27%), Gaps = 29/207 (14%)

Query: 103 FTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLR 162
            +   +L +L     ++           +   +N + +   +          +   + L 
Sbjct: 250 VSTLSKLTTLHCIQTDL---------LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLY 300

Query: 163 ILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYN 222
           +L      +   +D+        L  L ++   +  L        +S  + LK L     
Sbjct: 301 LLDCQAAGIT-ELDLS---QNPKLVYLYLNNTELTEL-------DVSHNTKLKSLSCVNA 349

Query: 223 SFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGIN 282
                 FSS+G + +L     A+ +               L   S    VS        N
Sbjct: 350 HIQD--FSSVGKIPALNNNFEAEGQTITMP-------KETLTNNSLTIAVSPDLLDQFGN 400

Query: 283 TGLDSLSNLEELDMTNNAINNLVVPKD 309
                  +    D   N I    +  D
Sbjct: 401 PMNIEPGDGGVYDQATNTITWENLSTD 427

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  103 bits (258), Expect = 6e-24
 Identities = 58/293 (19%), Positives = 112/293 (38%), Gaps = 40/293 (13%)

Query: 475 TLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTG 534
            LD+  N     I       L  L  L L  N  +   P +FA +  L+ L +S NQL  
Sbjct: 56  LLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113

Query: 535 EIPDRMAIGCF-SLEILALSNNN---LQGHIFSKKFNLTNLMRLQLDGNKF-IGEIPK-S 588
           E+P+        +L+ L +  N    ++  +F+    L  ++ ++L  N      I   +
Sbjct: 114 ELPE----KMPKTLQELRVHENEITKVRKSVFN---GLNQMIVVELGTNPLKSSGIENGA 166

Query: 589 LSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDL 648
                 L  + ++D +++  IP+  G   +L ++ +  N +          L+ L  L L
Sbjct: 167 FQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223

Query: 649 SNNTI-------FGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLH 701
           S N+I           P       + E+HL+ NK+  ++   +    Y+  + L  N + 
Sbjct: 224 SFNSISAVDNGSLANTPH------LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

Query: 702 G------SIPTWIDRLPQLSYLLLANNYIE-GEIPIQICQ-LKEVRLIDLSHN 746
                    P +  +    S + L +N ++  EI     + +     + L + 
Sbjct: 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 97.0 bits (242), Expect = 8e-22
 Identities = 61/237 (25%), Positives = 104/237 (43%), Gaps = 14/237 (5%)

Query: 522 LKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNK 580
              LD+  N++T EI D       +L  L L NN +   I    F  L  L RL L  N+
Sbjct: 54  TALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQ 111

Query: 581 FIGEIPKSLSKCYLLGGLYLSDNHLSGKIPR-WLGNLSALEDIIMPNNNL-EGPIPIE-F 637
            + E+P+ + K   L  L + +N ++ K+ +     L+ +  + +  N L    I    F
Sbjct: 112 -LKELPEKMPKT--LQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 638 CQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSY 697
             +  L  + +++  I  T+P    P  + E+HL  NKI     + +     L  L LS+
Sbjct: 168 QGMKKLSYIRIADTNI-TTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225

Query: 698 NCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPP 754
           N +       +   P L  L L NN +  ++P  +   K ++++ L +NN+S  I  
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGS 280

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 93.1 bits (232), Expect = 2e-20
 Identities = 55/304 (18%), Positives = 92/304 (30%), Gaps = 69/304 (22%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYF-------- 147
             +    F   + L +L L  N I+  +        + L  L+ L L  N          
Sbjct: 65  TEIKDGDFKNLKNLHTLILINNKISK-ISPGA---FAPLVKLERLYLSKNQLKELPEKMP 120

Query: 148 ---------NNSIFS----SLGGLSSLRILSLADNRL-NGSIDIKGLDSLSNLEELDMSY 193
                     N I         GL+ + ++ L  N L +  I+      +  L  + ++ 
Sbjct: 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180

Query: 194 NAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSID 253
             I    +PQGL       +L  L LD N       +SL GL++L  L L+ N       
Sbjct: 181 TNITT--IPQGL-----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS------ 227

Query: 254 IKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCL 313
                   I  V +                 L +  +L EL + NN +    VP      
Sbjct: 228 --------ISAVDNGS---------------LANTPHLRELHLNNNKLVK--VPGGLADH 262

Query: 314 RKLNTLYLGG--IAMIDGS--KVLQSIGSLPSLKTLYLLFTNFKGTIVNQEL-HNFTNLE 368
           + +  +YL    I+ I  +            S   + L     +   +            
Sbjct: 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 322

Query: 369 ELLL 372
            + L
Sbjct: 323 AVQL 326

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 84.7 bits (210), Expect = 1e-17
 Identities = 52/243 (21%), Positives = 87/243 (35%), Gaps = 31/243 (12%)

Query: 136 NLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNA 195
           +   L L +N            L +L  L L +N+++  I       L  LE L +S N 
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQ 111

Query: 196 IDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIK 255
           +  L  P+ +        L+ LR+  N       S   GL+ + ++ L  N         
Sbjct: 112 LKEL--PEKM-----PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK------ 158

Query: 256 GKQASSILRVPSFVDLVSLSSWSVGIN--TGL--DSLSNLEELDMTNNAINNLVVPKDYR 311
               SS +   +F  +  LS   +     T +      +L EL +  N I   V     +
Sbjct: 159 ----SSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK-VDAASLK 213

Query: 312 CLRKLNTLYLGG--IAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEE 369
            L  L  L L    I+ +D      S+ + P L+ L+L         V   L +   ++ 
Sbjct: 214 GLNNLAKLGLSFNSISAVDNG----SLANTPHLRELHLNNNKL--VKVPGGLADHKYIQV 267

Query: 370 LLL 372
           + L
Sbjct: 268 VYL 270

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.9 bits (195), Expect = 7e-16
 Identities = 38/245 (15%), Positives = 79/245 (32%), Gaps = 66/245 (26%)

Query: 80  KLDLGDIKNRKNRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKF 139
            ++LG      N      +    F   ++L  + ++  NI                    
Sbjct: 149 VVELGT-----NPLKSSGIENGAFQGMKKLSYIRIADTNIT------------------- 184

Query: 140 LLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNL 199
                     +I   L    SL  L L  N++   +D   L  L+NL +L +S+N+I  +
Sbjct: 185 ----------TIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAV 231

Query: 200 VVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQA 259
               G   L+   +L+ L L+ N     +   L     ++++ L +N             
Sbjct: 232 --DNGS--LANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNN------------ 274

Query: 260 SSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKD-YRCLRKLNT 318
                      + ++ S            ++   + + +N +    +    +RC+     
Sbjct: 275 -----------ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323

Query: 319 LYLGG 323
           + LG 
Sbjct: 324 VQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 75.0 bits (185), Expect = 2e-14
 Identities = 52/306 (16%), Positives = 94/306 (30%), Gaps = 57/306 (18%)

Query: 285 LDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG--IAMIDGSKVLQSIGSLPSL 342
             +L NL  L + NN I+  + P  +  L KL  LYL    +  +             +L
Sbjct: 72  FKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSKNQLKELPE-------KMPKTL 123

Query: 343 KTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSI-ASFTSLKYLSIRGCV 401
           + L +        +     +    +  + L  + L  S +          L Y+ I    
Sbjct: 124 QELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT- 181

Query: 402 LKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFG 461
               +     G  P        L  + L    ++ K     ++   NL  L L+ NS+  
Sbjct: 182 ---NITTIPQGLPPS-------LTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSI-- 228

Query: 462 SFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKM 521
                                    +          L +L+L+ N     +P   AD K 
Sbjct: 229 -----------------------SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY 264

Query: 522 LKSLDISYNQLT-----GEIPDRMAIGCFSLEILALSNNNLQGH-IFSKKF-NLTNLMRL 574
           ++ + +  N ++        P        S   ++L +N +Q   I    F  +     +
Sbjct: 265 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 324

Query: 575 QLDGNK 580
           QL   K
Sbjct: 325 QLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 70.4 bits (173), Expect = 5e-13
 Identities = 29/146 (19%), Positives = 47/146 (32%), Gaps = 10/146 (6%)

Query: 106 FQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILS 165
              L  L L  N I           L  LNNL  L L  N  +     SL     LR L 
Sbjct: 191 PPSLTELHLDGNKI----TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246

Query: 166 LADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNL--VVPQGLERLSTLSNLKFLRLDYNS 223
           L +N+L   +   GL     ++ + +  N I  +           +  ++   + L  N 
Sbjct: 247 LNNNKLV-KVP-GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304

Query: 224 FNSSI--FSSLGGLSSLRILSLADNR 247
                   S+   +     + L + +
Sbjct: 305 VQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 66.6 bits (163), Expect = 9e-12
 Identities = 53/336 (15%), Positives = 99/336 (29%), Gaps = 71/336 (21%)

Query: 184 SNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSL 243
            +   LD+  N I  +    G      L NL  L L  N  +     +   L  L  L L
Sbjct: 52  PDTALLDLQNNKITEI--KDGD--FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107

Query: 244 ADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWS---VGINTG-LDSLSNLEELDMTNN 299
           + N+               L       L  L         +     + L+ +  +++  N
Sbjct: 108 SKNQL------------KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155

Query: 300 AINNLVVPKDY-RCLRKLNTLYLGG--IAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTI 356
            + +  +     + ++KL+ + +    I  I         G  PSL  L+L        +
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-------GLPPSLTELHLDGNKIT-KV 207

Query: 357 VNQELHNFTNLEELLLVKSDLHVSQL-LQSIASFTSLKYLSIRGCVLKGALHGQDGGTFP 415
               L    NL +L L  S   +S +   S+A+   L+ L +    L            P
Sbjct: 208 DAASLKGLNNLAKLGL--SFNSISAVDNGSLANTPHLRELHLNNNKLV---------KVP 256

Query: 416 KFLYHQHDLKNVDLSH-----LNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSH 470
             L     ++ V L +     +  +   P        +   + L +N             
Sbjct: 257 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN------------- 303

Query: 471 QKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRN 506
             +   ++  + FR          +     + L   
Sbjct: 304 -PVQYWEIQPSTFRC---------VYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 4/88 (4%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
           +DL  NK+T         L  +  L L +N ++   P  F+ L ++E L LS N  L ++
Sbjct: 57  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKEL 115

Query: 882 PPQLIVLNTLAVFRVANNNLSGKIPDRV 909
           P ++    TL   RV  N ++ K+   V
Sbjct: 116 PEKM--PKTLQELRVHENEIT-KVRKSV 140

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.5 bits (116), Expect = 7e-06
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 823 DLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
            L  NK+T ++       L  +  L LS N+++     + +N   +  L L+ N L+ K+
Sbjct: 198 HLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255

Query: 882 PPQLIVLNTLAVFRVANNNLS 902
           P  L     + V  + NNN+S
Sbjct: 256 PGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 2e-04
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL-LGK 880
           + LS N+L  E+P        ++ L +  N +T    + F+ L Q+  ++L  N L    
Sbjct: 105 LYLSKNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 161

Query: 881 IPPQLIV-LNTLAVFRVANNNLSGKIPD 907
           I       +  L+  R+A+ N++  IP 
Sbjct: 162 IENGAFQGMKKLSYIRIADTNIT-TIPQ 188

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
           +  S   L  ++P  +        L+L +N +T      F NLK + +L L  N  + KI
Sbjct: 36  VQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKI 91

Query: 882 PPQ-LIVLNTLAVFRVANNNLS 902
            P     L  L    ++ N L 
Sbjct: 92  SPGAFAPLVKLERLYLSKNQLK 113

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 816 LMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 875
           +  +S I ++   +T  IP   G    +  L+L  N +T     +   L  +  L LS+N
Sbjct: 170 MKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226

Query: 876 LLLGKIPPQLIV-LNTLAVFRVANNNLSGKIPD 907
             +  +    +     L    + NN L  K+P 
Sbjct: 227 -SISAVDNGSLANTPHLRELHLNNNKLV-KVPG 257

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  103 bits (259), Expect = 6e-23
 Identities = 74/348 (21%), Positives = 126/348 (36%), Gaps = 49/348 (14%)

Query: 424 LKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFF 483
              +++    L+   P+       ++ TL++ +N+L     +P     +L TL+VS N  
Sbjct: 42  NAVLNVGESGLT-TLPD---CLPAHITTLVIPDNNLT---SLP-ALPPELRTLEVSGNQL 93

Query: 484 RGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIG 543
              +PV     L  L   +                   L  L I  NQLT  +P      
Sbjct: 94  T-SLPVLPPG-LLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT-SLPVLPP-- 141

Query: 544 CFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDN 603
              L+ L++S+N L     S     + L +L    N+ +  +P   S    L  L +SDN
Sbjct: 142 --GLQELSVSDNQLA----SLPALPSELCKLWAYNNQ-LTSLPMLPSG---LQELSVSDN 191

Query: 604 HLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSP 663
            L+  +P     L  L      NN L   +P     L   K L +S N +  +LP    P
Sbjct: 192 QLA-SLPTLPSELYKLW---AYNNRLT-SLPALPSGL---KELIVSGNRL-TSLPV--LP 240

Query: 664 AYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNY 723
           + ++E+ +S N++             L++L +  N L   +P  +  L   + + L  N 
Sbjct: 241 SELKELMVSGNRLTSLPMLPSG----LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 295

Query: 724 IEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAP 771
           +  E  +Q  +  E+         +                 H A A 
Sbjct: 296 LS-ERTLQALR--EITSAPGYSGPIIRFDMAGASAPRETRALHLAAAD 340

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 91.1 bits (226), Expect = 6e-19
 Identities = 66/373 (17%), Positives = 115/373 (30%), Gaps = 86/373 (23%)

Query: 288 LSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSI-GSLPSLKTLY 346
            +    L++  + +  L  P        + TL +           L S+    P L+TL 
Sbjct: 39  NNGNAVLNVGESGLTTL--PDCL--PAHITTLVIPDNN-------LTSLPALPPELRTLE 87

Query: 347 LLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGAL 406
           +       T +         L           ++ L       + L  L I G  L    
Sbjct: 88  VSGNQL--TSLPVLPPGLLELSIF-----SNPLTHLPALP---SGLCKLWIFGNQLT--- 134

Query: 407 HGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMP 466
                 + P        L+ + +S   L+   P       + L  L   NN L       
Sbjct: 135 ------SLPVLPPG---LQELSVSDNQLA-SLPALP----SELCKLWAYNNQL------- 173

Query: 467 IHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLD 526
                               +P+       GL +L++S N    S+P+  ++   L  L 
Sbjct: 174 ------------------TSLPMLPS----GLQELSVSDNQLA-SLPTLPSE---LYKLW 207

Query: 527 ISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIP 586
              N+LT  +P   +     L+ L +S N L     S     + L  L + GN+ +  +P
Sbjct: 208 AYNNRLT-SLPALPS----GLKELIVSGNRLT----SLPVLPSELKELMVSGNR-LTSLP 257

Query: 587 KSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKIL 646
              S    L  L +  N L+ ++P  L +LS+   + +  N L         ++      
Sbjct: 258 MLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGY 313

Query: 647 DLSNNTIFGTLPS 659
                       S
Sbjct: 314 SGPIIRFDMAGAS 326

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 80.3 bits (198), Expect = 1e-15
 Identities = 60/419 (14%), Positives = 119/419 (28%), Gaps = 118/419 (28%)

Query: 235 LSSLRILSLADNRFNGSIDIKGKQASSILRVPS--FVDLVSLSSWSVGINTGLDSLSNLE 292
            +   +L++ ++               +  +P      + +L      + +       L 
Sbjct: 39  NNGNAVLNVGESG--------------LTTLPDCLPAHITTLVIPDNNLTSLPALPPELR 84

Query: 293 ELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNF 352
            L+++ N + +L  P                               L  L       T+ 
Sbjct: 85  TLEVSGNQLTSL--PV--------------------------LPPGLLELSIFSNPLTHL 116

Query: 353 KGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGG 412
                       + L +L      +  +QL         L+ LS+    L          
Sbjct: 117 PALP--------SGLCKL-----WIFGNQLTSLPVLPPGLQELSVSDNQLA--------- 154

Query: 413 TFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQK 472
           + P        L  +   +  L+   P       + L+ L +++N L             
Sbjct: 155 SLPALPSE---LCKLWAYNNQLT-SLPMLP----SGLQELSVSDNQL------------- 193

Query: 473 LATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQL 532
                         +P         L  L    N    S+P+       LK L +S N+L
Sbjct: 194 ------------ASLPTLPS----ELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRL 233

Query: 533 TGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKC 592
           T  +P   +     L+ L +S N L     S     + L+ L +  N+ +  +P+SL   
Sbjct: 234 T-SLPVLPS----ELKELMVSGNRLT----SLPMLPSGLLSLSVYRNQ-LTRLPESLIHL 283

Query: 593 YLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNN 651
                + L  N LS +  + L  +++      P    +        +      L  ++ 
Sbjct: 284 SSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFD-MAGASAPRETRALHLAAADW 341

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 76.5 bits (188), Expect = 2e-14
 Identities = 52/320 (16%), Positives = 93/320 (29%), Gaps = 50/320 (15%)

Query: 106 FQQLESLDLSWNNIAGCVENEGVERL-SRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRIL 164
              + +L +  NN+           L +    L+ L +  N    S+     GL  L I 
Sbjct: 60  PAHITTLVIPDNNL---------TSLPALPPELRTLEVSGNQL-TSLPVLPPGLLELSIF 109

Query: 165 SLADNRLNGSID-IKGLD-----------SLSNLEELDMSYNAIDNLVVPQGLERLSTL- 211
           S     L      +  L                L+EL +S N + +L  P     L  L 
Sbjct: 110 SNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASL--PALPSELCKLW 167

Query: 212 -------------SNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSI------ 252
                        S L+ L +  N   +S+ +    L  L   +                
Sbjct: 168 AYNNQLTSLPMLPSGLQELSVSDNQL-ASLPTLPSELYKLWAYNNRLTSLPALPSGLKEL 226

Query: 253 DIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRC 312
            + G + +S+  +PS  +L  L      + +     S L  L +  N +  L  P+    
Sbjct: 227 IVSGNRLTSLPVLPS--ELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRL--PESLIH 282

Query: 313 LRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLL 372
           L    T+ L G  + + +       +     +  ++  +  G    +E           L
Sbjct: 283 LSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL 342

Query: 373 VKSDLHVSQLLQSIASFTSL 392
           V +             F   
Sbjct: 343 VPAREGEPAPADRWHMFGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 74.9 bits (184), Expect = 6e-14
 Identities = 56/354 (15%), Positives = 105/354 (29%), Gaps = 75/354 (21%)

Query: 130 RLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEEL 189
           R    N    L +  +    ++   L   + +  L + DN L  S+          L  L
Sbjct: 35  RACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLP----ALPPELRTL 86

Query: 190 DMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFN 249
           ++S N + +L  P        L  L           +         S L  L +  N+  
Sbjct: 87  EVSGNQLTSL--PVLPPG---LLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLT 134

Query: 250 GSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKD 309
            S+                  L  LS     + +     S L +L   NN + +L  P  
Sbjct: 135 -SLP------------VLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSL--PML 179

Query: 310 YRCLRKLNTLYLGG--IAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNL 367
                 L  L +    +A +           L  L       T+             + L
Sbjct: 180 ---PSGLQELSVSDNQLASLP-----TLPSELYKLWAYNNRLTSLPALP--------SGL 223

Query: 368 EELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNV 427
           +EL      +  ++L       + LK L + G  L          + P        L ++
Sbjct: 224 KEL-----IVSGNRLTSLPVLPSELKELMVSGNRLT---------SLPMLP---SGLLSL 266

Query: 428 DLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTN 481
            +    L+ + P  L  + ++  T+ L  N L       + + +++ +    + 
Sbjct: 267 SVYRNQLT-RLPESL-IHLSSETTVNLEGNPL---SERTLQALREITSAPGYSG 315

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.8 bits (142), Expect = 7e-09
 Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 15/133 (11%)

Query: 626 NNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIH 685
                    +  C  +   +L++  + +  TLP C  PA+I  + +  N +         
Sbjct: 25  RGRAAVVQKMRACLNNGNAVLNVGESGL-TTLPDCL-PAHITTLVIPDNNLTSLPALP-- 80

Query: 686 YSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSH 745
             P L TL++S N L  S+P     L +LS            +P     L +   + +  
Sbjct: 81  --PELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLT----HLPALPSGLCK---LWIFG 130

Query: 746 NNLSGHIPPCLVN 758
           N L+  +P     
Sbjct: 131 NQLT-SLPVLPPG 142

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.0 bits (122), Expect = 2e-06
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 12/88 (13%)

Query: 815 ILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSY 874
           +   ++ + +  N LT  +P     L     L +S N LT ++P     L ++       
Sbjct: 59  LPAHITTLVIPDNNLT-SLPALPPELRT---LEVSGNQLT-SLPVLPPGLLELSIFSNPL 113

Query: 875 NLLLGKIPPQLIVLNTLAVFRVANNNLS 902
              L  +P  L  L       +  N L+
Sbjct: 114 T-HLPALPSGLCKLW------IFGNQLT 134

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.7 bits (108), Expect = 7e-05
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 13/89 (14%)

Query: 823 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIP 882
           ++S N+LT  +P     L  +   +    +L        +    +  L +  N  L  +P
Sbjct: 87  EVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIFGN-QLTSLP 137

Query: 883 PQLIVLNTLAVFRVANNNLSGKIPDRVAQ 911
                L  L    V++N L+  +P   ++
Sbjct: 138 VLPPGLQEL---SVSDNQLA-SLPALPSE 162

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 12/80 (15%)

Query: 823 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIP 882
            +S N+L   +PT    L +   L   +N LT ++P   S LK    L +S N  L  +P
Sbjct: 187 SVSDNQLA-SLPTLPSELYK---LWAYNNRLT-SLPALPSGLK---ELIVSGN-RLTSLP 237

Query: 883 PQLIVLNTLAVFRVANNNLS 902
                L  L    V+ N L+
Sbjct: 238 VLPSELKEL---MVSGNRLT 254

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  101 bits (253), Expect = 3e-22
 Identities = 57/292 (19%), Positives = 110/292 (37%), Gaps = 61/292 (20%)

Query: 106 FQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILS 165
           F +    +L   ++            + LN++  ++ +++   +     +  L ++  L 
Sbjct: 20  FAETIKDNLKKKSV------TDAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 71

Query: 166 LADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFN 225
           L  N+L    DIK L +L NL  L +  N I +      L  L  L  LK L L++N  +
Sbjct: 72  LNGNKLT---DIKPLTNLKNLGWLFLDENKIKD------LSSLKDLKKLKSLSLEHNGIS 122

Query: 226 SSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGL 285
               + L  L  L  L L +N+                       +  ++         L
Sbjct: 123 D--INGLVHLPQLESLYLGNNK-----------------------ITDIT--------VL 149

Query: 286 DSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTL 345
             L+ L+ L + +N I+++        L KL  LYL    + D    L+++  L +L  L
Sbjct: 150 SRLTKLDTLSLEDNQISDI---VPLAGLTKLQNLYLSKNHISD----LRALAGLKNLDVL 202

Query: 346 YLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSI 397
            L         +N+ +++ +NL     VK+        + I+     +  ++
Sbjct: 203 ELFSQE----CLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNV 250

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 91.7 bits (227), Expect = 3e-19
 Identities = 60/257 (23%), Positives = 90/257 (35%), Gaps = 64/257 (24%)

Query: 78  VIKLDLG-----DIKNRKNRKSERHLNASL--------FTPFQQLESLDLSWNNIAGCVE 124
            IK +L      D   +    S   + A+               +  L L+ N +     
Sbjct: 23  TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL----- 77

Query: 125 NEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLS 184
              ++ L+ L NL +L LD N       SSL  L  L+ LSL  N ++   DI GL  L 
Sbjct: 78  -TDIKPLTNLKNLGWLFLDEN--KIKDLSSLKDLKKLKSLSLEHNGIS---DINGLVHLP 131

Query: 185 NLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLA 244
            LE L +  N I +      +  LS L+ L  L L+ N  +      L GL+ L+ L L+
Sbjct: 132 QLESLYLGNNKITD------ITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLS 183

Query: 245 DNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNL 304
            N             S +                      L  L NL+ L++ +    N 
Sbjct: 184 KN-----------HISDL--------------------RALAGLKNLDVLELFSQECLNK 212

Query: 305 VVPKDYRCLRKLNTLYL 321
            +      L   NT+  
Sbjct: 213 PINHQSN-LVVPNTVKN 228

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 83.6 bits (206), Expect = 1e-16
 Identities = 50/259 (19%), Positives = 91/259 (35%), Gaps = 18/259 (6%)

Query: 495 LSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCF-SLEILALS 553
            +  +  NL +   + +   +  ++  +  +  + + +         I    ++  L L+
Sbjct: 20  FAETIKDNLKKK--SVTDAVTQNELNSIDQIIANNSDIK----SVQGIQYLPNVTKLFLN 73

Query: 554 NNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWL 613
            N L   I     NL NL  L LD NK I ++  SL     L  L L  N +S  I   L
Sbjct: 74  GNKLT-DIKPLT-NLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSLEHNGIS-DIN-GL 127

Query: 614 GNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSK 673
            +L  LE + + NN +     +   +L  L  L L +N I   +        ++ ++LSK
Sbjct: 128 VHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQI-SDIVPLAGLTKLQNLYLSK 184

Query: 674 NKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQIC 733
           N I   L ++      L  L+L               L   + +   +  +     I   
Sbjct: 185 NHIS-DLRALAGL-KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDD 242

Query: 734 QLKEVRLIDLSHNNLSGHI 752
              E   +       +  +
Sbjct: 243 GDYEKPNVKWHLPEFTNEV 261

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.2 bits (197), Expect = 2e-15
 Identities = 51/240 (21%), Positives = 90/240 (37%), Gaps = 44/240 (18%)

Query: 141 LLDSNYFNNSI--FSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDN 198
           + ++   +  I         +     +L    +    D    + L++++++  + + I +
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIKS 57

Query: 199 LVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQ 258
                 ++ +  L N+  L L+ N         L  L +L  L L +N+           
Sbjct: 58  ------VQGIQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENK----------- 98

Query: 259 ASSILRVPSFVDLVSLSSWSVGIN-----TGLDSLSNLEELDMTNNAINNLVVPKDYRCL 313
              I  + S  DL  L S S+  N      GL  L  LE L + NN I ++        L
Sbjct: 99  ---IKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI---TVLSRL 152

Query: 314 RKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVN-QELHNFTNLEELLL 372
            KL+TL L    + D    +  +  L  L+ LYL   +    I + + L    NL+ L L
Sbjct: 153 TKLDTLSLEDNQISD----IVPLAGLTKLQNLYLSKNH----ISDLRALAGLKNLDVLEL 204

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 68.6 bits (167), Expect = 5e-12
 Identities = 49/277 (17%), Positives = 89/277 (32%), Gaps = 26/277 (9%)

Query: 424 LKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFF 483
           +  +  ++ ++        ++   N+  L L  N L  +   P+ + + L  L +  N  
Sbjct: 45  IDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKL--TDIKPLTNLKNLGWLFLDEN-- 97

Query: 484 RGHIP-VEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAI 542
              I  +     L  L  L+L  N  +  I +    +  L+SL +  N++T +I      
Sbjct: 98  --KIKDLSSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT-DITVLS-- 150

Query: 543 GCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSD 602
               L+ L+L +N +          LT L  L L  N  I ++ ++L+    L  L L  
Sbjct: 151 RLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNH-ISDL-RALAGLKNLDVLELFS 206

Query: 603 NHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFS 662
                K      NL     +   + +L  P  I           D     +   LP   +
Sbjct: 207 QECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG-------DYEKPNVKWHLPEFTN 259

Query: 663 PAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNC 699
                                    P      +SY+ 
Sbjct: 260 EVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDV 296

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 99.4 bits (248), Expect = 5e-22
 Identities = 56/252 (22%), Positives = 95/252 (37%), Gaps = 38/252 (15%)

Query: 106 FQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILS 165
                 L+L  N I     N        L +L+ L L  N+       +  GL++L  L 
Sbjct: 63  STNTRLLNLHENQIQIIKVNS----FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118

Query: 166 LADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFN 225
           L DNRL  +I       LS L+EL +  N I+++  P      + + +L+ L L      
Sbjct: 119 LFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESI--PSYA--FNRIPSLRRLDLGELKRL 173

Query: 226 SSI-FSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGIN-- 282
           S I   +  GLS+LR L+LA                 +  +P+   L+ L    +  N  
Sbjct: 174 SYISEGAFEGLSNLRYLNLAMCN--------------LREIPNLTPLIKLDELDLSGNHL 219

Query: 283 -----TGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG--IAMIDGSKVLQS 335
                     L +L++L M  + I   +    +  L+ L  + L    + ++        
Sbjct: 220 SAIRPGSFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLVEINLAHNNLTLLPHD----L 274

Query: 336 IGSLPSLKTLYL 347
              L  L+ ++L
Sbjct: 275 FTPLHHLERIHL 286

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.4 bits (235), Expect = 2e-20
 Identities = 67/290 (23%), Positives = 113/290 (38%), Gaps = 48/290 (16%)

Query: 421 QHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVST 480
            +    V     NL  + P+ +   +TN + L L  N +                  +  
Sbjct: 42  SNQFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQI----------------QIIKV 81

Query: 481 NFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRM 540
           N F+          L  L  L LSRN        +F  +  L +L++  N+LT  IP+  
Sbjct: 82  NSFKH---------LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGA 131

Query: 541 AIGCFSLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNKFIGEIPK-SLSKCYLLGGL 598
            +    L+ L L NN ++  I S  F  + +L RL L   K +  I + +      L  L
Sbjct: 132 FVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190

Query: 599 YLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTI----- 653
            L+  +L  +IP  L  L  L+++ +  N+L    P  F  L +L+ L +  + I     
Sbjct: 191 NLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER 248

Query: 654 --FGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLH 701
             F  L S      + EI+L+ N +      +     +L  + L +N  +
Sbjct: 249 NAFDNLQS------LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.8 bits (210), Expect = 3e-17
 Identities = 45/228 (19%), Positives = 81/228 (35%), Gaps = 40/228 (17%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSL 155
           R +    F     L +L+L  N +   + N        L+ LK L L +N   +    + 
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTT-IPNGA---FVYLSKLKELWLRNNPIESIPSYAF 156

Query: 156 GGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLK 215
             + SLR L L + +    I     + LSNL  L+++   +        +  L+ L  L 
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE------IPNLTPLIKLD 210

Query: 216 FLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLS 275
            L L  N  ++    S  GL  L+ L +  ++              I  +          
Sbjct: 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ--------------IQVIERNA------ 250

Query: 276 SWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG 323
                     D+L +L E+++ +N +  L     +  L  L  ++L  
Sbjct: 251 ---------FDNLQSLVEINLAHNNLTLL-PHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.4 bits (209), Expect = 4e-17
 Identities = 60/239 (25%), Positives = 99/239 (41%), Gaps = 17/239 (7%)

Query: 522 LKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNK 580
              +      L  E+PD ++    +  +L L  N +Q  I    F +L +L  LQL  N 
Sbjct: 45  FSKVICVRKNLR-EVPDGIST---NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNH 99

Query: 581 FIGEIP-KSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIE-FC 638
            I  I   + +    L  L L DN L+         LS L+++ + NN +E  IP   F 
Sbjct: 100 -IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFN 157

Query: 639 QLDYLKILDLSNNTIFGTLPS-CFSP-AYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLS 696
           ++  L+ LDL        +    F   + +  ++L+   +   + ++      L  LDLS
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPL-IKLDELDLS 215

Query: 697 YNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQ-ICQLKEVRLIDLSHNNLSGHIPP 754
            N L    P     L  L  L +  + I+  I       L+ +  I+L+HNNL+  +P 
Sbjct: 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT-LLPH 272

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 76.3 bits (188), Expect = 1e-14
 Identities = 40/175 (22%), Positives = 63/175 (36%), Gaps = 34/175 (19%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFS-- 153
             +    F    +L+ L L  N I   + +      +R+ +L+ L L        +    
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIE-SIPSYA---FNRIPSLRRLDLGEL---KRLSYIS 177

Query: 154 --SLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLV--VPQGLERL- 208
             +  GLS+LR L+LA   L    +I  L  L  L+ELD+S N +  +     QGL  L 
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234

Query: 209 -----------------STLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADN 246
                              L +L  + L +N+           L  L  + L  N
Sbjct: 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 72.9 bits (179), Expect = 2e-13
 Identities = 62/296 (20%), Positives = 98/296 (33%), Gaps = 75/296 (25%)

Query: 289 SNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG--IAMIDGSKVLQSIGSLPSLKTLY 346
           +N   L++  N I  +     ++ LR L  L L    I  I+      +   L +L TL 
Sbjct: 64  TNTRLLNLHENQIQIIK-VNSFKHLRHLEILQLSRNHIRTIEI----GAFNGLANLNTLE 118

Query: 347 LLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGAL 406
           L F N   TI N      + L+EL L   +  +  +     +F  +              
Sbjct: 119 L-FDNRLTTIPNGAFVYLSKLKELWL--RNNPIESI--PSYAFNRIP------------- 160

Query: 407 HGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMP 466
                            L+ +DL  L           E  +NL+ L LA  +L       
Sbjct: 161 ----------------SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL------- 197

Query: 467 IHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLD 526
                                       L  L +L+LS N  +   P SF  +  L+ L 
Sbjct: 198 -----------REIPNLTP---------LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237

Query: 527 ISYNQLTGEIPDRMAIGCFSLEILALSNNNL---QGHIFSKKFNLTNLMRLQLDGN 579
           +  +Q+   I         SL  + L++NNL      +F+    L +L R+ L  N
Sbjct: 238 MIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFT---PLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.8 bits (153), Expect = 3e-10
 Identities = 51/261 (19%), Positives = 85/261 (32%), Gaps = 53/261 (20%)

Query: 201 VPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQAS 260
           VP G+      +N + L L  N       +S   L  L IL L+ N              
Sbjct: 58  VPDGI-----STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH------------- 99

Query: 261 SILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLY 320
            I  +                    + L+NL  L++ +N +  +     +  L KL  L+
Sbjct: 100 -IRTIEIGA---------------FNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKELW 142

Query: 321 LGG--IAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLH 378
           L    I  I       +   +PSL+ L L        I        +NL  L L   +L 
Sbjct: 143 LRNNPIESIPSY----AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198

Query: 379 VSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKF 438
               + ++     L  L + G      L     G+F         L+ + +    +    
Sbjct: 199 E---IPNLTPLIKLDELDLSGN----HLSAIRPGSFQGL----MHLQKLWMIQSQIQ-VI 246

Query: 439 PNWLVENNTNLKTLLLANNSL 459
                +N  +L  + LA+N+L
Sbjct: 247 ERNAFDNLQSLVEINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
           ++L  N++         +L  +  L LS N++       F+ L  + +L+L  N  L  I
Sbjct: 69  LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTI 127

Query: 882 PPQLIV-LNTLAVFRVANNNLSGKIPDRV 909
           P    V L+ L    + NN +   IP   
Sbjct: 128 PNGAFVYLSKLKELWLRNNPIE-SIPSYA 155

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
           +      L  E+P  I   T  R LNL  N +      +F +L+ +E L LS N  +  I
Sbjct: 48  VICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTI 103

Query: 882 PPQ-LIVLNTLAVFRVANNNLS 902
                  L  L    + +N L+
Sbjct: 104 EIGAFNGLANLNTLELFDNRLT 125

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 816 LMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 875
           L+ +  +DLS N L+   P     L  ++ L +  + +       F NL+ +  ++L++N
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265

Query: 876 LLLGKIPPQLIV-LNTLAVFRVANNNL 901
             L  +P  L   L+ L    + +N  
Sbjct: 266 -NLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 24/143 (16%)

Query: 823 DLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLLLGK 880
            L  N +   IP+     +  +R L+L        I    F  L  +  L+L+   L  +
Sbjct: 142 WLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL--R 198

Query: 881 IPPQLIVLNTLAVFRVANNNLSGKIPDRV--------------AQFSTFEEDSYEGNPFL 926
             P L  L  L    ++ N+LS  I                  +Q    E ++++    L
Sbjct: 199 EIPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257

Query: 927 CGLPLSKSCDDNGLTTATPEAYT 949
             + L+     N LT    + +T
Sbjct: 258 VEINLA----HNNLTLLPHDLFT 276

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 99.1 bits (247), Expect = 7e-22
 Identities = 60/265 (22%), Positives = 101/265 (38%), Gaps = 27/265 (10%)

Query: 448 NLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNA 507
               ++     L     +P         L++  N  +  I  +   +L  L  L L RN+
Sbjct: 55  QFSKVVCTRRGLS---EVPQGIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNS 110

Query: 508 FNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNL---QGHIFSK 564
                  +F  +  L +L++  N LT  IP         L  L L NN +     + F+ 
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFN- 168

Query: 565 KFNLTNLMRLQLDGNKFIGEIPK-SLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDII 623
              + +LMRL L   K +  I + +    + L  L L   ++   +P  L  L  LE++ 
Sbjct: 169 --RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELE 224

Query: 624 MPNNNLEGPIPIEFCQLDYLKILDLSNNTI-------FGTLPSCFSPAYIEEIHLSKNKI 676
           M  N+     P  F  L  LK L + N+ +       F  L S      + E++L+ N +
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS------LVELNLAHNNL 278

Query: 677 EGRLESIIHYSPYLMTLDLSYNCLH 701
                 +     YL+ L L +N  +
Sbjct: 279 SSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.3 bits (227), Expect = 2e-19
 Identities = 52/262 (19%), Positives = 87/262 (33%), Gaps = 62/262 (23%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNI----AGCVENEGVERLSRLNNLKFLLLDSN---YFN 148
           + + A  F     LE L L  N+I     G          + L +L  L L  N      
Sbjct: 88  QMIQADTFRHLHHLEVLQLGRNSIRQIEVGA--------FNGLASLNTLELFDNWLTVIP 139

Query: 149 NSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMS-YNAIDNLVVPQGLER 207
           +  F     LS LR L L +N +  SI     + + +L  LD+     ++ +   +G   
Sbjct: 140 SGAFE---YLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYI--SEGA-- 191

Query: 208 LSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPS 267
              L NLK+L L   +       +L  L  L  L ++ N                  +  
Sbjct: 192 FEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNH--------------FPEIRP 235

Query: 268 FVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG--IA 325
                               LS+L++L + N+ ++  +    +  L  L  L L    ++
Sbjct: 236 GS---------------FHGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNNLS 279

Query: 326 MIDGSKVLQSIGSLPSLKTLYL 347
            +           L  L  L+L
Sbjct: 280 SLPHD----LFTPLRYLVELHL 297

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 86.3 bits (214), Expect = 8e-18
 Identities = 55/244 (22%), Positives = 93/244 (38%), Gaps = 29/244 (11%)

Query: 136 NLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNA 195
           N ++L L  N        +   L  L +L L  N +   I++   + L++L  L++  N 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW 134

Query: 196 IDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIK 255
           +  +  P G      LS L+ L L  N   S    +   + SL  L L + +    I   
Sbjct: 135 LTVI--PSGA--FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190

Query: 256 GKQASSILRVPSFVDLVSLSSWSVGIN-----TGLDSLSNLEELDMTNNAINNLVVPKDY 310
                      +F  L +L   ++G+        L  L  LEEL+M+ N    +  P  +
Sbjct: 191 -----------AFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI-RPGSF 238

Query: 311 RCLRKLNTLYLGG--IAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLE 368
             L  L  L++    +++I+      +   L SL  L  L  N   ++ +        L 
Sbjct: 239 HGLSSLKKLWVMNSQVSLIER----NAFDGLASLVELN-LAHNNLSSLPHDLFTPLRYLV 293

Query: 369 ELLL 372
           EL L
Sbjct: 294 ELHL 297

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 85.6 bits (212), Expect = 2e-17
 Identities = 48/229 (20%), Positives = 88/229 (38%), Gaps = 42/229 (18%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSL 155
           R +    F     L +L+L  N +   + +        L+ L+ L L +N   +    + 
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTV-IPSGA---FEYLSKLRELWLRNNPIESIPSYAF 167

Query: 156 GGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLK 215
             + SL  L L + +    I     + L NL+ L++    I +      +  L+ L  L+
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD------MPNLTPLVGLE 221

Query: 216 FLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLS 275
            L +  N F      S  GLSSL+ L + +++              +  +          
Sbjct: 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ--------------VSLIERNA------ 261

Query: 276 SWSVGINTGLDSLSNLEELDMTNNAINNLVVPKD-YRCLRKLNTLYLGG 323
                     D L++L EL++ +N +++L  P D +  LR L  L+L  
Sbjct: 262 ---------FDGLASLVELNLAHNNLSSL--PHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.4 bits (209), Expect = 3e-17
 Identities = 59/245 (24%), Positives = 98/245 (40%), Gaps = 29/245 (11%)

Query: 522 LKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNK 580
              +  +   L+ E+P  +     +   L L  NN+Q  I +  F +L +L  LQL  N 
Sbjct: 56  FSKVVCTRRGLS-EVPQGIPS---NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNS 110

Query: 581 FIGEI-PKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIE-FC 638
            I +I   + +    L  L L DN L+         LS L ++ + NN +E  IP   F 
Sbjct: 111 -IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFN 168

Query: 639 QLDYLKILDLSNN--------TIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYL 690
           ++  L  LDL             F  L +      ++ ++L    I+  + ++      L
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFN------LKYLNLGMCNIK-DMPNLTPL-VGL 220

Query: 691 MTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQ-ICQLKEVRLIDLSHNNLS 749
             L++S N      P     L  L  L + N+ +   I       L  +  ++L+HNNLS
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS 279

Query: 750 GHIPP 754
             +P 
Sbjct: 280 -SLPH 283

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 77.1 bits (190), Expect = 9e-15
 Identities = 39/175 (22%), Positives = 61/175 (34%), Gaps = 34/175 (19%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFS-- 153
             + +  F    +L  L L  N I   + +      +R+ +L  L L        +    
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIE-SIPSYA---FNRVPSLMRLDLGEL---KKLEYIS 188

Query: 154 --SLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLV--VPQGLERL- 208
             +  GL +L+ L+L    +    D+  L  L  LEEL+MS N    +      GL  L 
Sbjct: 189 EGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245

Query: 209 -----------------STLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADN 246
                              L++L  L L +N+ +S        L  L  L L  N
Sbjct: 246 KLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.5 bits (152), Expect = 3e-10
 Identities = 57/311 (18%), Positives = 103/311 (33%), Gaps = 78/311 (25%)

Query: 201 VPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQAS 260
           VPQG+      SN ++L L  N+       +   L  L +L L  N              
Sbjct: 69  VPQGI-----PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS------------- 110

Query: 261 SILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLY 320
            I ++                    + L++L  L++ +N +  +     +  L KL  L+
Sbjct: 111 -IRQIEVGA---------------FNGLASLNTLELFDNWLTVI-PSGAFEYLSKLRELW 153

Query: 321 LGG--IAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLH 378
           L    I  I       +   +PSL  L L        I         NL+ L L     +
Sbjct: 154 LRNNPIESIPSY----AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL--GMCN 207

Query: 379 VSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKF 438
               ++ + + T L  L                    + L         ++S  +   + 
Sbjct: 208 ----IKDMPNLTPLVGL--------------------EEL---------EMSGNHFP-EI 233

Query: 439 PNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGL 498
                   ++LK L + N+ +    R        L  L+++ N     +P ++ T L  L
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYL 292

Query: 499 MDLNLSRNAFN 509
           ++L+L  N +N
Sbjct: 293 VELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 4/113 (3%)

Query: 816 LMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 875
           L ++  ++L    +  ++P  +  L  +  L +S N+     P +F  L  ++ L +  +
Sbjct: 195 LFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252

Query: 876 LLLGKIPPQLIV-LNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 927
             +  I       L +L    +A+NNLS    D         E     NP+ C
Sbjct: 253 -QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 3/89 (3%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
           ++L  N +         +L  +  L L  N++       F+ L  + +L+L  N  L  I
Sbjct: 80  LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVI 138

Query: 882 PPQLIV-LNTLAVFRVANNNLSGKIPDRV 909
           P      L+ L    + NN +   IP   
Sbjct: 139 PSGAFEYLSKLRELWLRNNPIE-SIPSYA 166

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.5 bits (108), Expect = 7e-05
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
           +  +   L+ E+P  I   +  R LNL  NN+      TF +L  +E L L  N  + +I
Sbjct: 59  VVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQI 114

Query: 882 PPQ-LIVLNTLAVFRVANNNLS 902
                  L +L    + +N L+
Sbjct: 115 EVGAFNGLASLNTLELFDNWLT 136

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 9/92 (9%)

Query: 816 LMSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSY 874
           L S++ ++L  N LT  IP+    YL+++R L L +N +       F+ +  +  LDL  
Sbjct: 122 LASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180

Query: 875 NLLLGKIPPQ----LIVLNTLAVFRVANNNLS 902
              L  I       L  L  L    +   N+ 
Sbjct: 181 LKKLEYISEGAFEGLFNLKYL---NLGMCNIK 209

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 95.5 bits (238), Expect = 2e-21
 Identities = 58/255 (22%), Positives = 94/255 (36%), Gaps = 43/255 (16%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSL 155
           + L   +F    QL  L LS N ++   +    +      +LK+L L  N    ++ S+ 
Sbjct: 41  QSLPHGVFDKLTQLTKLSLSSNGLS--FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNF 97

Query: 156 GGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLK 215
            GL  L  L    + L    +     SL NL  LD+S+          G+   + LS+L+
Sbjct: 98  LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA--FNGI--FNGLSSLE 153

Query: 216 FLRLDYNSFNSSIFS-SLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSL 274
            L++  NSF  +        L +L  L L+  +              + ++         
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ--------------LEQLSPTA----- 194

Query: 275 SSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG--IAMIDGSKV 332
                      +SLS+L+ L+M++N   +L     Y+CL  L  L      I        
Sbjct: 195 ----------FNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLNHIMTSKKQ-E 242

Query: 333 LQSIGSLPSLKTLYL 347
           LQ      SL  L L
Sbjct: 243 LQHF--PSSLAFLNL 255

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.0 bits (229), Expect = 2e-20
 Identities = 56/270 (20%), Positives = 91/270 (33%), Gaps = 35/270 (12%)

Query: 486 HIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLT-GEIPDRMAIGC 544
            +P  I    S    L L  N         F  +  L  L +S N L+      +   G 
Sbjct: 21  SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77

Query: 545 FSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKS--LSKCYLLGGLYLSD 602
            SL+ L LS N +   + S    L  L  L    +  + ++ +         L  L +S 
Sbjct: 78  TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISH 135

Query: 603 NHLSGKIPRWLGNLSALEDIIMPNNN-LEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCF 661
            H           LS+LE + M  N+  E  +P  F +L  L  LDLS            
Sbjct: 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC---------- 185

Query: 662 SPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLAN 721
               +E++            +  +    L  L++S+N            L  L  L  + 
Sbjct: 186 ---QLEQLS----------PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232

Query: 722 NYIEGEIPIQICQ--LKEVRLIDLSHNNLS 749
           N+I      Q  Q     +  ++L+ N+ +
Sbjct: 233 NHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 57/302 (18%), Positives = 98/302 (32%), Gaps = 70/302 (23%)

Query: 159 SSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLR 218
           SS   L L  N+L  S+     D L+ L +L +S N +               ++LK+L 
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS--DFGTTSLKYLD 84

Query: 219 LDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWS 278
           L +N    ++ S+  GL  L  L    +                        L  +S +S
Sbjct: 85  LSFNGV-ITMSSNFLGLEQLEHLDFQHSN-----------------------LKQMSEFS 120

Query: 279 VGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGS 338
           V       SL NL  LD+++                               + +      
Sbjct: 121 V-----FLSLRNLIYLDISHTHTRVA------------------------FNGIFNG--- 148

Query: 339 LPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDL-HVSQLLQSIASFTSLKYLSI 397
           L SL+ L +   +F+   +        NL  L L +  L  +S    +  S +SL+ L++
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP--TAFNSLSSLQVLNM 206

Query: 398 RGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANN 457
                  +L               + L+ +D S  ++       L    ++L  L L  N
Sbjct: 207 SHNNFF-SLD-------TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

Query: 458 SL 459
             
Sbjct: 259 DF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 76.2 bits (188), Expect = 5e-15
 Identities = 43/215 (20%), Positives = 78/215 (36%), Gaps = 17/215 (7%)

Query: 424 LKNVDLSHLNLSGKF-PNWLVENNTNLKTLLLANNSLF---GSFRMPIHSHQKLATLDVS 479
           L  + LS   LS K   +      T+LK L L+ N +     +F       ++L  LD  
Sbjct: 54  LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL----GLEQLEHLDFQ 109

Query: 480 TNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDR 539
            +  +      +   L  L+ L++S      +    F  +  L+ L ++ N         
Sbjct: 110 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169

Query: 540 MAIGCFSLEILALSNNNLQ---GHIFSKKFNLTNLMRLQLDGNKFIGEIPKS-LSKCYLL 595
           +     +L  L LS   L+      F+   +L++L  L +  N     +          L
Sbjct: 170 IFTELRNLTFLDLSQCQLEQLSPTAFN---SLSSLQVLNMSHNN-FFSLDTFPYKCLNSL 225

Query: 596 GGLYLSDNHLSGKIPRWLGNL-SALEDIIMPNNNL 629
             L  S NH+     + L +  S+L  + +  N+ 
Sbjct: 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.0 bits (164), Expect = 5e-12
 Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 7/162 (4%)

Query: 598 LYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLE--GPIPIEFCQLDYLKILDLSNNTIFG 655
           L L  N L          L+ L  + + +N L   G           LK LDLS N +  
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-I 91

Query: 656 TLPSCFSP-AYIEEIHLSKNKIEGRLE-SIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQ 713
           T+ S F     +E +    + ++   E S+      L+ LD+S+     +     + L  
Sbjct: 92  TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151

Query: 714 LSYLLLA-NNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPP 754
           L  L +A N++ E  +P    +L+ +  +DLS   L   + P
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSP 192

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 823 DLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
           DLS  +L  ++       L+ ++ LN+SHNN        +  L  ++ LD S N  +   
Sbjct: 181 DLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTS 238

Query: 882 PPQLI--VLNTLAVFRVANNNLS 902
             Q +    ++LA   +  N+ +
Sbjct: 239 KKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 815 ILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLT--GTIPTTFSNLKQIESLDL 872
           I  S + ++L  NKL          LT++  L+LS N L+  G    +      ++ LDL
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 873 SYNLLLGKIPPQLIVLNTLAVFRVANNNLS 902
           S+N ++  +    + L  L      ++NL 
Sbjct: 86  SFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 114

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.4 bits (108), Expect = 6e-05
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 823 DLSCNKLT--GEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGK 880
            LS N L+  G         T ++ L+LS N +  T+ + F  L+Q+E LD  ++ L   
Sbjct: 58  SLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQM 116

Query: 881 IPPQLIV-LNTLAVFRVANNNLSGKIPDRV 909
               + + L  L    +++ +      + +
Sbjct: 117 SEFSVFLSLRNLIYLDISHTHTR-VAFNGI 145

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.0 bits (107), Expect = 7e-05
 Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 5/83 (6%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL--LG 879
           I  +   LT  +PT I   +    L L  N L       F  L Q+  L LS N L   G
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 880 KIPPQLIVLNTLAVFRVANNNLS 902
                     +L    ++ N + 
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVI 91

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 2/82 (2%)

Query: 823 DLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
           D   + L       +   L  +  L++SH +        F+ L  +E L ++ N      
Sbjct: 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166

Query: 882 PPQ-LIVLNTLAVFRVANNNLS 902
            P     L  L    ++   L 
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLE 188

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 95.1 bits (237), Expect = 2e-21
 Identities = 56/274 (20%), Positives = 102/274 (37%), Gaps = 49/274 (17%)

Query: 106 FQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILS 165
                 +    +N+            + L+ +  L              +  L++L  L 
Sbjct: 18  LANAIKIAAGKSNV------TDTVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLE 69

Query: 166 LADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFN 225
           L DN++    D+  L +L+ + EL++S N + N      +  ++ L ++K L L      
Sbjct: 70  LKDNQIT---DLAPLKNLTKITELELSGNPLKN------VSAIAGLQSIKTLDLTSTQIT 120

Query: 226 SSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGIN--- 282
               + L GLS+L++L L  N+              I  +     L +L   S+G     
Sbjct: 121 D--VTPLAGLSNLQVLYLDLNQ--------------ITNISPLAGLTNLQYLSIGNAQVS 164

Query: 283 --TGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLP 340
             T L +LS L  L   +N I+++        L  L  ++L    + D    +  + +  
Sbjct: 165 DLTPLANLSKLTTLKADDNKISDISPLAS---LPNLIEVHLKNNQISD----VSPLANTS 217

Query: 341 SLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVK 374
           +L  + L       TI NQ +    NL    +VK
Sbjct: 218 NLFIVTLTNQ----TITNQPVFYNNNLVVPNVVK 247

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.7 bits (184), Expect = 2e-14
 Identities = 47/255 (18%), Positives = 89/255 (34%), Gaps = 35/255 (13%)

Query: 148 NNSI--FSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGL 205
             +I        L++   ++   + +    D      L  +  L      +        +
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKSNVT---DTVTQADLDGITTLSAFGTGVTT------I 56

Query: 206 ERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRV 265
           E +  L+NL  L L  N       + L  L+ +  L L+ N      ++        ++ 
Sbjct: 57  EGVQYLNNLIGLELKDNQITD--LAPLKNLTKITELELSGNPLK---NVSAIAGLQSIKT 111

Query: 266 PSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIA 325
                 + L+S  +   T L  LSNL+ L +  N I N+        L  L  L +G   
Sbjct: 112 ------LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI---SPLAGLTNLQYLSIGNAQ 162

Query: 326 MIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQS 385
           + D    L  + +L  L TL               L +  NL E+ L   +  +S  +  
Sbjct: 163 VSD----LTPLANLSKLTTLKADDNKISDI---SPLASLPNLIEVHL--KNNQISD-VSP 212

Query: 386 IASFTSLKYLSIRGC 400
           +A+ ++L  +++   
Sbjct: 213 LANTSNLFIVTLTNQ 227

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 45/266 (16%), Positives = 93/266 (34%), Gaps = 33/266 (12%)

Query: 495 LSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCF-SLEILALS 553
           L+  + +   ++        + AD+  + +L      +T  I     +    +L  L L 
Sbjct: 18  LANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIE---GVQYLNNLIGLELK 71

Query: 554 NNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWL 613
           +N +     +   NLT +  L+L GN  +  +  +++    +  L L+   ++   P  L
Sbjct: 72  DNQITD--LAPLKNLTKITELELSGNP-LKNV-SAIAGLQSIKTLDLTSTQITDVTP--L 125

Query: 614 GNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTI-----FGTLPSCFSPAYIEE 668
             LS L+ + +  N +    P+    L  L+ L + N  +        L        +  
Sbjct: 126 AGLSNLQVLYLDLNQITNISPLA--GLTNLQYLSIGNAQVSDLTPLANLSK------LTT 177

Query: 669 IHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEI 728
           +    NKI   +  +    P L+ + L  N +    P  +     L  + L N  I    
Sbjct: 178 LKADDNKISD-ISPLASL-PNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN-- 231

Query: 729 PIQICQLKEVRLIDLSHNNLSGHIPP 754
              +     + + ++        I P
Sbjct: 232 -QPVFYNNNLVVPNVVKGPSGAPIAP 256

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 53/275 (19%), Positives = 101/275 (36%), Gaps = 30/275 (10%)

Query: 361 LHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYH 420
                N  ++   KS++       + A    +  LS  G  +             + + +
Sbjct: 15  DPALANAIKIAAGKSNV---TDTVTQADLDGITTLSAFGTGVTTI----------EGVQY 61

Query: 421 QHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVST 480
            ++L  ++L    ++   P   ++N T +  L L+ N L       I   Q + TLD+++
Sbjct: 62  LNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTS 116

Query: 481 NFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRM 540
                  P+     LS L  L L  N    +  S  A +  L+ L I   Q++   P   
Sbjct: 117 TQITDVTPLA---GLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTPLA- 170

Query: 541 AIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYL 600
                 L  L   +N +     S   +L NL+ + L  N+ I ++   L+    L  + L
Sbjct: 171 --NLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQ-ISDVS-PLANTSNLFIVTL 224

Query: 601 SDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPI 635
           ++  ++ +   +  NL     +  P+     P  I
Sbjct: 225 TNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATI 259

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 18/126 (14%)

Query: 103 FTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLR 162
                 L+ L +    +        +  L+ L+ L  L  D N  ++   S L  L +L 
Sbjct: 147 LAGLTNLQYLSIGNAQV------SDLTPLANLSKLTTLKADDNKISD--ISPLASLPNLI 198

Query: 163 ILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYN 222
            + L +N+++   D+  L + SNL  + ++   I N  V          +NL    +   
Sbjct: 199 EVHLKNNQIS---DVSPLANTSNLFIVTLTNQTITNQPV-------FYNNNLVVPNVVKG 248

Query: 223 SFNSSI 228
              + I
Sbjct: 249 PSGAPI 254

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 94.4 bits (235), Expect = 7e-21
 Identities = 52/267 (19%), Positives = 98/267 (36%), Gaps = 19/267 (7%)

Query: 496 SGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNN 555
             +  L+LS N       S       L++L ++ N +   I +       SLE L LS N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 556 NLQGHIFSKKF-NLTNLMRLQLDGNKFIGEIPKS--LSKCYLLGGLYLSDNHLSGKIP-R 611
            L  ++ S  F  L++L  L L GN     + ++   S    L  L + +     KI  +
Sbjct: 111 YLS-NLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168

Query: 612 WLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAY-IEEIH 670
               L+ LE++ +  ++L+   P     +  +  L L        L         +E + 
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228

Query: 671 LSKNKIEG----RLESIIHYS----PYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANN 722
           L    ++      L +    S         + ++   L   +   ++++  L  L  + N
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRN 287

Query: 723 YIEGEIPIQICQ-LKEVRLIDLSHNNL 748
            ++  +P  I   L  ++ I L  N  
Sbjct: 288 QLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 86.7 bits (215), Expect = 2e-18
 Identities = 51/266 (19%), Positives = 102/266 (38%), Gaps = 20/266 (7%)

Query: 447 TNLKTLLLANNSL----FGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLN 502
             +K+L L+NN +                 L  L +++N     I  +  + L  L  L+
Sbjct: 52  EAVKSLDLSNNRITYISNSDL----QRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLD 106

Query: 503 LSRNAFNGSIPSS-FADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHI 561
           LS N    ++ SS F  +  L  L++  N         +      L+IL + N +    I
Sbjct: 107 LSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165

Query: 562 FSKKF-NLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALE 620
             K F  LT L  L++D +      PKSL     +  L L        +  ++   S++E
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVE 225

Query: 621 DIIMPNNNLEGPIPIE--------FCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLS 672
            + + + +L+     E          +    + + +++ ++F  +      + + E+  S
Sbjct: 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS 285

Query: 673 KNKIEGRLESIIHYSPYLMTLDLSYN 698
           +N+++   + I      L  + L  N
Sbjct: 286 RNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 84.4 bits (209), Expect = 2e-17
 Identities = 49/258 (18%), Positives = 87/258 (33%), Gaps = 44/258 (17%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNN-SIFSS 154
             +    F+    LE LDLS+N ++    +        L++L FL L  N +      S 
Sbjct: 89  NTIEEDSFSSLGSLEHLDLSYNYLSNL--SSSW--FKPLSSLTFLNLLGNPYKTLGETSL 144

Query: 155 LGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNL 214
              L+ L+IL + +      I  K    L+ LEEL++  + + +         L ++ N+
Sbjct: 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY--EPKS--LKSIQNV 200

Query: 215 KFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSL 274
             L L        +   +   SS+  L L D   +                         
Sbjct: 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT---------------------FHF 239

Query: 275 SSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQ 334
           S  S G    L        + +T+ ++  +   K    +  L  L             L+
Sbjct: 240 SELSTGETNSLIKKFTFRNVKITDESLFQV--MKLLNQISGLLELEFSRNQ-------LK 290

Query: 335 SIG-----SLPSLKTLYL 347
           S+       L SL+ ++L
Sbjct: 291 SVPDGIFDRLTSLQKIWL 308

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 82.5 bits (204), Expect = 8e-17
 Identities = 55/279 (19%), Positives = 100/279 (35%), Gaps = 39/279 (13%)

Query: 109 LESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLAD 168
           ++SLDLS N I     ++    L R  NL+ L+L SN  N     S   L SL  L L+ 
Sbjct: 54  VKSLDLSNNRITYISNSD----LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109

Query: 169 NRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSI 228
           N L  ++       LS+L  L++  N    L     L   S L+ L+ LR+      + I
Sbjct: 110 NYL-SNLSSSWFKPLSSLTFLNLLGNPYKTL-GETSL--FSHLTKLQILRVGNMDTFTKI 165

Query: 229 FS-SLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGIN----- 282
                 GL+ L  L +  +                    S   + ++S   + +      
Sbjct: 166 QRKDFAGLTFLEELEIDASDL------------QSYEPKSLKSIQNVSHLILHMKQHILL 213

Query: 283 --TGLDSLSNLEELDMTNNAINNL-------VVPKDYRCLRKLNTLYLGGIAMIDGSKVL 333
               +D  S++E L++ +  ++                       + +   ++    K+L
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL 273

Query: 334 QSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLL 372
                +  L  L       K ++ +      T+L+++ L
Sbjct: 274 N---QISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWL 308

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 81.7 bits (202), Expect = 1e-16
 Identities = 54/264 (20%), Positives = 102/264 (38%), Gaps = 42/264 (15%)

Query: 159 SSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLR 218
            +++ L L++NR+   I    L    NL+ L ++ N I+ +   +     S+L +L+ L 
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTI--EEDS--FSSLGSLEHLD 106

Query: 219 LDYN---SFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLS 275
           L YN   + +SS F     LSSL  L+L  N +            ++     F  L  L 
Sbjct: 107 LSYNYLSNLSSSWFK---PLSSLTFLNLLGNPY-----------KTLGETSLFSHLTKLQ 152

Query: 276 SWSVGINTGL--------DSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG--IA 325
              VG               L+ LEEL++  + + +   PK  + ++ ++ L L      
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY-EPKSLKSIQNVSHLILHMKQHI 211

Query: 326 MIDGSKVLQSIGSLPSLKTLYL----LFTNFKGTIVNQELHNFTNLEEL-LLVKSDLHVS 380
           ++        +    S++ L L    L T     +   E ++         +  +D  + 
Sbjct: 212 LLLEI----FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267

Query: 381 QLLQSIASFTSLKYLSIRGCVLKG 404
           Q+++ +   + L  L      LK 
Sbjct: 268 QVMKLLNQISGLLELEFSRNQLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 77.1 bits (190), Expect = 4e-15
 Identities = 63/356 (17%), Positives = 107/356 (30%), Gaps = 83/356 (23%)

Query: 524 SLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNKFI 582
               S   L   IP  +     +++ L LSNN +  +I +       NL  L L  N  I
Sbjct: 35  ICKGSSGSLN-SIPSGLTE---AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNG-I 88

Query: 583 GEIP-KSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEG-PIPIEFCQL 640
             I   S S    L  L LS N+LS     W   LS+L  + +  N  +       F  L
Sbjct: 89  NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 148

Query: 641 DYLKILDLSNNTIFGTLPS-CFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNC 699
             L+IL + N   F  +    F+        L+                 L  L++  + 
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFA-------GLTF----------------LEELEIDASD 185

Query: 700 LHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNT 759
           L    P  +  +  +S+L+L        + I +     V  ++L   +L           
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF-------- 237

Query: 760 ALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSM 819
                        S          L +   N                           + 
Sbjct: 238 -----------HFSE---------LSTGETNSLI---------------------KKFTF 256

Query: 820 SGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 875
             + ++   L  ++   +  ++ +  L  S N L       F  L  ++ + L  N
Sbjct: 257 RNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 66/388 (17%), Positives = 113/388 (29%), Gaps = 121/388 (31%)

Query: 178 KGLDSL-----SNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSL 232
             L+S+       ++ LD+S N I  +        L    NL+ L L  N  N+    S 
Sbjct: 41  GSLNSIPSGLTEAVKSLDLSNNRITYI--SNSD--LQRCVNLQALVLTSNGINTIEEDSF 96

Query: 233 GGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLE 292
             L SL  L L+ N                           LS+ S         LS+L 
Sbjct: 97  SSLGSLEHLDLSYNY--------------------------LSNLSSSW---FKPLSSLT 127

Query: 293 ELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNF 352
            L++  N    L     +  L KL  L +G          + +   +             
Sbjct: 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGN---------MDTFTKIQR----------- 167

Query: 353 KGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIA--SFTSLKYLSIRGCVLKGALHGQD 410
                 ++    T LEEL     ++  S L QS    S  S+                  
Sbjct: 168 ------KDFAGLTFLEEL-----EIDASDL-QSYEPKSLKSI------------------ 197

Query: 411 GGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSH 470
                       ++ ++ L             V+  ++++ L L +  L           
Sbjct: 198 -----------QNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDL----------- 234

Query: 471 QKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYN 530
                 ++ST      I            ++ ++  +    +      +  L  L+ S N
Sbjct: 235 DTFHFSELSTGETNSLIK------KFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRN 287

Query: 531 QLTGEIPDRMAIGCFSLEILALSNNNLQ 558
           QL   +PD +     SL+ + L  N   
Sbjct: 288 QLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 823 DLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
            L+ N +   I       L  +  L+LS+N L+    + F  L  +  L+L  N     +
Sbjct: 82  VLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TL 139

Query: 882 PPQLI--VLNTLAVFRVANNNLSGKIPDRV 909
               +   L  L + RV N +   KI  + 
Sbjct: 140 GETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 93.9 bits (234), Expect = 9e-21
 Identities = 57/266 (21%), Positives = 90/266 (33%), Gaps = 27/266 (10%)

Query: 447 TNLKTLLLANNSL----FGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLN 502
            +L  L+L NN +      +F       +KL  L +S N     IP  +    S L++L 
Sbjct: 78  QHLYALVLVNNKISKIHEKAFS----PLRKLQKLYISKNHLV-EIPPNL---PSSLVELR 129

Query: 503 LSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIF 562
           +  N         F+ ++ +  +++  N L     +  A     L  L +S   L   I 
Sbjct: 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIP 188

Query: 563 SKKFNLTNLMRLQLDGNKFIGEIPK-SLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALED 621
                   L  L LD NK I  I    L +   L  L L  N +       L  L  L +
Sbjct: 189 KDLP--ETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245

Query: 622 IIMPNNNLEGPIPIEFCQLDYLKILDLSNNTI-------FGTLPSCFSPAYIEEIHLSKN 674
           + + NN L   +P     L  L+++ L  N I       F  +      AY   I L  N
Sbjct: 246 LHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN 304

Query: 675 KIEGRL--ESIIHYSPYLMTLDLSYN 698
            +       +        + +     
Sbjct: 305 PVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 91.6 bits (228), Expect = 5e-20
 Identities = 57/290 (19%), Positives = 105/290 (36%), Gaps = 44/290 (15%)

Query: 486 HIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCF 545
            +P EI         L+L  N  +      F  ++ L +L +  N+++ +I ++      
Sbjct: 47  AVPKEISP---DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLR 102

Query: 546 SLEILALSNNNL---QGHIFSKKFNLTNLMRLQLDGNKFIGEIPK-SLSKCYLLGGLYLS 601
            L+ L +S N+L     ++ S      +L+ L++  N+ I ++PK   S    +  + + 
Sbjct: 103 KLQKLYISKNHLVEIPPNLPS------SLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMG 155

Query: 602 DNHLSGKI--PRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTI------ 653
            N L      P     L  L  + +    L G IP +    + L  L L +N I      
Sbjct: 156 GNPLENSGFEPGAFDGLK-LNYLRISEAKLTG-IPKDL--PETLNELHLDHNKIQAIELE 211

Query: 654 -FGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLP 712
                        +  + L  N+I       + + P L  L L  N L   +P  +  L 
Sbjct: 212 DLLRYSK------LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK 264

Query: 713 QLSYLLLANNYIEGEIPIQI-------CQLKEVRLIDLSHNNLS-GHIPP 754
            L  + L  N I  ++ +          +      I L +N +    + P
Sbjct: 265 LLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 87.0 bits (216), Expect = 2e-18
 Identities = 56/290 (19%), Positives = 91/290 (31%), Gaps = 42/290 (14%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFS-S 154
             L    F   Q L +L L  N I+  +  +     S L  L+ L +      N +    
Sbjct: 67  SELRKDDFKGLQHLYALVLVNNKISK-IHEKA---FSPLRKLQKLYIS----KNHLVEIP 118

Query: 155 LGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNL 214
               SSL  L + DNR+   +       L N+  ++M  N ++N     G      L  L
Sbjct: 119 PNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA--FDGL-KL 174

Query: 215 KFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSL 274
            +LR+      + I   L    +L  L L  N+               + +   +    L
Sbjct: 175 NYLRISEAKL-TGIPKDL--PETLNELHLDHNKI------------QAIELEDLLRYSKL 219

Query: 275 SSWSVGIN-------TGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG--IA 325
               +G N         L  L  L EL + NN ++   VP     L+ L  +YL    I 
Sbjct: 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR--VPAGLPDLKLLQVVYLHTNNIT 277

Query: 326 MIDGS--KVLQSIGSLPSLKTLYLLFTNFKGTIVNQEL-HNFTNLEELLL 372
            +  +    +           + L         V        T+   +  
Sbjct: 278 KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 76.2 bits (188), Expect = 7e-15
 Identities = 51/306 (16%), Positives = 94/306 (30%), Gaps = 58/306 (18%)

Query: 285 LDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG--IAMIDGSKVLQSIGSLPSL 342
              L +L  L + NN I+  +  K +  LRKL  LY+    +  I             SL
Sbjct: 74  FKGLQHLYALVLVNNKISK-IHEKAFSPLRKLQKLYISKNHLVEIPP-------NLPSSL 125

Query: 343 KTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVL 402
             L +     +  +         N+  + +  + L  S           L YL I     
Sbjct: 126 VELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA-- 182

Query: 403 KGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGS 462
              L G               L  + L H  +        +   + L  L L +N +   
Sbjct: 183 --KLTGIPKDLPET-------LNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQI--- 229

Query: 463 FRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKML 522
                          +                L  L +L+L  N  +  +P+   D+K+L
Sbjct: 230 -------------RMIENGSLSF---------LPTLRELHLDNNKLS-RVPAGLPDLKLL 266

Query: 523 KSLDISYNQLTGEIPD------RMAIGCFSLEILALSNNNLQ-GHIFSKKF-NLTNLMRL 574
           + + +  N +T ++           +       ++L NN +    +    F  +T+ + +
Sbjct: 267 QVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 325

Query: 575 QLDGNK 580
           Q    K
Sbjct: 326 QFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 57/351 (16%), Positives = 115/351 (32%), Gaps = 76/351 (21%)

Query: 184 SNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSL 243
            +   LD+  N I  L   +       L +L  L L  N  +     +   L  L+ L +
Sbjct: 54  PDTTLLDLQNNDISEL--RKDD--FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109

Query: 244 ADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINN 303
           + N               ++ +P  +                   S+L EL + +N I  
Sbjct: 110 SKNH--------------LVEIPPNL------------------PSSLVELRIHDNRIRK 137

Query: 304 LVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHN 363
           +     +  LR +N + +GG   ++ S           L  L +       T + ++L  
Sbjct: 138 V-PKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGLKLNYLRISEAKL--TGIPKDL-- 191

Query: 364 FTNLEELLLVKSDLHVSQL-LQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQH 422
              L EL L      +  + L+ +  ++ L  L +    ++  +     G+         
Sbjct: 192 PETLNELHL--DHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIE---NGSL----SFLP 241

Query: 423 DLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNF 482
            L+ + L +  LS + P  L  +   L+ + L  N               +  + V+   
Sbjct: 242 TLRELHLDNNKLS-RVPAGL-PDLKLLQVVYLHTN--------------NITKVGVND-- 283

Query: 483 FRGHIPVEIGTYLSGLMDLNLSRN--AFNGSIPSSFADMKMLKSLDISYNQ 531
           F    PV  G   +    ++L  N   +    P++F  +    ++     +
Sbjct: 284 FC---PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.4 bits (147), Expect = 9e-10
 Identities = 54/263 (20%), Positives = 92/263 (34%), Gaps = 44/263 (16%)

Query: 643 LKILDLSNNTIFGTLPSCFSPA-YIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLH 701
             +LDL NN I       F    ++  + L  NKI    E        L  L +S N L 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 702 GSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQ-LKEVRLIDLSHNNLSGHIPPCLVNTA 760
             IP   +    L  L + +N I  ++P  +   L+ +  I++  N L         N+ 
Sbjct: 116 -EIPP--NLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLE--------NSG 163

Query: 761 LNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMS 820
              G   A   +  +    S   L  +  +                        +  +++
Sbjct: 164 FEPG---AFDGLKLNYLRISEAKLTGIPKD------------------------LPETLN 196

Query: 821 GIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLG 879
            + L  NK+   I  +     +++  L L HN +      + S L  +  L L  N  L 
Sbjct: 197 ELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLS 254

Query: 880 KIPPQLIVLNTLAVFRVANNNLS 902
           ++P  L  L  L V  +  NN++
Sbjct: 255 RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
           +DL  N ++         L  + AL L +N ++      FS L++++ L +S N  L +I
Sbjct: 59  LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEI 117

Query: 882 PPQLIVLNTLAVFRVANNNLSGKIPDRV 909
           PP L   ++L   R+ +N +  K+P  V
Sbjct: 118 PPNL--PSSLVELRIHDNRIR-KVPKGV 142

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
           +  S   L   +P +I        L+L +N+++      F  L+ + +L L  N  + KI
Sbjct: 38  VQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKI 93

Query: 882 PPQLIV-LNTLAVFRVANNNLS 902
             +    L  L    ++ N+L 
Sbjct: 94  HEKAFSPLRKLQKLYISKNHLV 115

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 6/92 (6%)

Query: 817 MSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL 876
           + ++ + +S  KLT  IP  +     +  L+L HN +            ++  L L +N 
Sbjct: 172 LKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN- 227

Query: 877 LLGKIPPQ-LIVLNTLAVFRVANNNLSGKIPD 907
            +  I    L  L TL    + NN LS ++P 
Sbjct: 228 QIRMIENGSLSFLPTLRELHLDNNKLS-RVPA 258

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 5/86 (5%)

Query: 823 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL-LGKI 881
            +S N L  EIP      + +  L +  N +       FS L+ +  +++  N L     
Sbjct: 108 YISKNHLV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF 164

Query: 882 PPQLIVLNTLAVFRVANNNLSGKIPD 907
            P       L   R++   L+  IP 
Sbjct: 165 EPGAFDGLKLNYLRISEAKLT-GIPK 189

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 86.9 bits (216), Expect = 1e-19
 Identities = 38/197 (19%), Positives = 76/197 (38%), Gaps = 45/197 (22%)

Query: 108 QLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLA 167
            L  + L+  N+        +  +   +N+K L +++ +  N  ++ + GLS+L  L + 
Sbjct: 45  SLTYITLANINV------TDLTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIM 96

Query: 168 DNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSS 227
              +  S  I  L  L++L  LD+S++A D+      L +++TL  +  + L YN   + 
Sbjct: 97  GKDV-TSDKIPNLSGLTSLTLLDISHSAHDDS----ILTKINTLPKVNSIDLSYNGAITD 151

Query: 228 IFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDS 287
           I   L  L  L+ L++  +  +   D                              G++ 
Sbjct: 152 I-MPLKTLPELKSLNIQFDGVH---DY----------------------------RGIED 179

Query: 288 LSNLEELDMTNNAINNL 304
              L +L   +  I   
Sbjct: 180 FPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 83.9 bits (208), Expect = 1e-18
 Identities = 39/194 (20%), Positives = 80/194 (41%), Gaps = 30/194 (15%)

Query: 136 NLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNA 195
             K  L      +++   +   ++SL  ++LA+  +    D+ G++   N+++L ++   
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIH 77

Query: 196 IDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIK 255
             N         +S LSNL+ LR+      S    +L GL+SL +L ++ +  + SI   
Sbjct: 78  ATNY------NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI--- 128

Query: 256 GKQASSILRVPSFVDLVSLSSWSVGIN------TGLDSLSNLEELDMTNNAINNLVVPKD 309
                    +     L  ++S  +  N        L +L  L+ L++  + +++    + 
Sbjct: 129 ---------LTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY---RG 176

Query: 310 YRCLRKLNTLYLGG 323
                KLN LY   
Sbjct: 177 IEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 80.8 bits (200), Expect = 2e-17
 Identities = 27/145 (18%), Positives = 59/145 (40%), Gaps = 14/145 (9%)

Query: 106 FQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILS 165
              ++ L ++  +            +S L+NL+ L +      +    +L GL+SL +L 
Sbjct: 65  AHNIKDLTINNIHA------TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 166 LADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFN 225
           ++ +  +    +  +++L  +  +D+SYN     ++P     L TL  LK L + ++  +
Sbjct: 119 ISHSAHD-DSILTKINTLPKVNSIDLSYNGAITDIMP-----LKTLPELKSLNIQFDGVH 172

Query: 226 SSIFSSLGGLSSLRILSLADNRFNG 250
              +  +     L  L        G
Sbjct: 173 D--YRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 30/175 (17%), Positives = 66/175 (37%), Gaps = 21/175 (12%)

Query: 509 NGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFS-LEILALSNNNLQGHIFSKKFN 567
           + +   + A M  L  + ++   +T    D   I     ++ L ++N +     ++    
Sbjct: 33  SSTANITEAQMNSLTYITLANINVT----DLTGIEYAHNIKDLTINNIHATN--YNPISG 86

Query: 568 LTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDI-IMPN 626
           L+NL RL++ G     +   +LS    L  L +S +     I   +  L  +  I +  N
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 627 NNLEGPIPIEFCQLDYLKILDLSNNTI-----FGTLPSCFSPAYIEEIHLSKNKI 676
             +   +P++   L  LK L++  + +         P       + +++     I
Sbjct: 147 GAITDIMPLK--TLPELKSLNIQFDGVHDYRGIEDFPK------LNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 8/97 (8%)

Query: 103 FTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLR 162
            +    L  LD+S +      ++  + +++ L  +  + L  N     I   L  L  L+
Sbjct: 108 LSGLTSLTLLDISHSAH----DDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELK 162

Query: 163 ILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNL 199
            L++  + ++   D +G++    L +L      I   
Sbjct: 163 SLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 26/185 (14%), Positives = 66/185 (35%), Gaps = 11/185 (5%)

Query: 567 NLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPN 626
                +   L  +         ++    L  + L++ +++      +     ++D+ + N
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNS---LTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 627 NNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSP-AYIEEIHLSKNKIEGRLESIIH 685
            +     PI    L  L+ L +    +        S    +  + +S +  +  + + I+
Sbjct: 76  IHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 686 YSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSH 745
             P + ++DLSYN     I   +  LP+L  L +  + +     I+     ++  +    
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFS 190

Query: 746 NNLSG 750
             + G
Sbjct: 191 QTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
           + +    +T +    +  LT +  L++SH+    +I T  + L ++ S+DLSYN  +  I
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

Query: 882 PPQLIVLNTLAVFRVANNNLS 902
            P L  L  L    +  + + 
Sbjct: 153 MP-LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 24/143 (16%), Positives = 49/143 (34%), Gaps = 13/143 (9%)

Query: 617 SALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTI-----FGTLPSCFSPAYIEEIHL 671
           S  +  +           I   Q++ L  + L+N  +          +      I+++ +
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHN------IKDLTI 73

Query: 672 SKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQ 731
           +          I      L  L +    +       +  L  L+ L ++++  +  I  +
Sbjct: 74  NNIHATN-YNPISGL-SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

Query: 732 ICQLKEVRLIDLSHNNLSGHIPP 754
           I  L +V  IDLS+N     I P
Sbjct: 132 INTLPKVNSIDLSYNGAITDIMP 154

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 35/194 (18%), Positives = 67/194 (34%), Gaps = 25/194 (12%)

Query: 210 TLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFV 269
             S  K         +S+   +   ++SL  ++LA+       D+ G        +    
Sbjct: 18  PDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT---DLTG--------IEYAH 66

Query: 270 DLVSLSSWSVGIN--TGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMI 327
           ++  L+  ++       +  LSNLE L +    + +  +P +   L  L  L +   A  
Sbjct: 67  NIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHSAHD 125

Query: 328 DGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQL--LQS 385
           D    L  I +LP + ++ L +      I    L     L+ L     ++    +   + 
Sbjct: 126 DSI--LTKINTLPKVNSIDLSYNGAITDI--MPLKTLPELKSL-----NIQFDGVHDYRG 176

Query: 386 IASFTSLKYLSIRG 399
           I  F  L  L    
Sbjct: 177 IEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 31/201 (15%), Positives = 65/201 (32%), Gaps = 43/201 (21%)

Query: 335 SIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKY 394
           +   + SL  + L   N         +    N+++L +             I+  ++L+ 
Sbjct: 39  TEAQMNSLTYITLANINVTDL---TGIEYAHNIKDLTINNIHATN---YNPISGLSNLER 92

Query: 395 LSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLL 454
           L I G                       D+ +  + +L+             T+L  L +
Sbjct: 93  LRIMGK----------------------DVTSDKIPNLS-----------GLTSLTLLDI 119

Query: 455 ANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPS 514
           ++++   S    I++  K+ ++D+S N     I       L  L  LN+  +  +     
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFDGVHDY--R 175

Query: 515 SFADMKMLKSLDISYNQLTGE 535
              D   L  L      + G+
Sbjct: 176 GIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 2/84 (2%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
           + ++    T   P  I  L+ +  L +   ++T       S L  +  LD+S++     I
Sbjct: 71  LTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 882 PPQLIVLNTLAVFRVANNNLSGKI 905
             ++  L  +    ++ N     I
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDI 152

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 88.9 bits (221), Expect = 2e-19
 Identities = 54/241 (22%), Positives = 86/241 (35%), Gaps = 44/241 (18%)

Query: 109 LESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLAD 168
            + + L  N I+               NL  L L SN       ++  GL+ L  L L+D
Sbjct: 34  SQRIFLHGNRISHVPAAS----FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 169 NRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSI 228
           N    S+D      L  L  L +    +  L    GL     L+ L++L L  N+  +  
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQEL--GPGL--FRGLAALQYLYLQDNALQALP 145

Query: 229 FSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSL 288
             +   L +L  L L  NR              I  VP                     L
Sbjct: 146 DDTFRDLGNLTHLFLHGNR--------------ISSVPERA---------------FRGL 176

Query: 289 SNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG--IAMIDGSKVLQSIGSLPSLKTLY 346
            +L+ L +  N + ++  P  +R L +L TLYL    ++ +       ++  L +L+ L 
Sbjct: 177 HSLDRLLLHQNRVAHV-HPHAFRDLGRLMTLYLFANNLSALPTE----ALAPLRALQYLR 231

Query: 347 L 347
           L
Sbjct: 232 L 232

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 87.0 bits (216), Expect = 8e-19
 Identities = 54/230 (23%), Positives = 77/230 (33%), Gaps = 42/230 (18%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSI-FSS 154
            H+ A+ F   + L  L L  N +A  ++       + L  L+ L L  N    S+  ++
Sbjct: 45  SHVPAASFRACRNLTILWLHSNVLA-RIDAAA---FTGLALLEQLDLSDNAQLRSVDPAT 100

Query: 155 LGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNL 214
             GL  L  L L    L   +       L+ L+ L +  NA+  L  P        L NL
Sbjct: 101 FHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQAL--PDDT--FRDLGNL 155

Query: 215 KFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSL 274
             L L  N  +S    +  GL SL  L L  NR              +  V         
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNR--------------VAHVHPHA----- 196

Query: 275 SSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKD-YRCLRKLNTLYLGG 323
                        L  L  L +  N ++ L  P +    LR L  L L  
Sbjct: 197 ----------FRDLGRLMTLYLFANNLSAL--PTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 85.8 bits (213), Expect = 2e-18
 Identities = 61/244 (25%), Positives = 82/244 (33%), Gaps = 40/244 (16%)

Query: 486 HIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCF 545
            +PV I    +    + L  N  +    +SF   + L  L +  N L   I      G  
Sbjct: 25  AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLA 80

Query: 546 SLEILALSNNN----LQGHIFSKKFNLTNLMRLQLDGNKFIGEIPK-SLSKCYLLGGLYL 600
            LE L LS+N     +    F     L  L  L LD    + E+          L  LYL
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFH---GLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYL 136

Query: 601 SDNHLSGKIP-RWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPS 659
            DN L   +P     +L  L  + +  N +       F  L  L  L L  N +    P 
Sbjct: 137 QDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 660 CFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWI-DRLPQLSYLL 718
            F         L +                LMTL L  N L  ++PT     L  L YL 
Sbjct: 196 AFR-------DLGR----------------LMTLYLFANNLS-ALPTEALAPLRALQYLR 231

Query: 719 LANN 722
           L +N
Sbjct: 232 LNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 83.1 bits (206), Expect = 2e-17
 Identities = 45/211 (21%), Positives = 73/211 (34%), Gaps = 18/211 (8%)

Query: 473 LATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQL 532
              + +  N    H+P         L  L L  N       ++F  + +L+ LD+S N  
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 533 TGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNKFIGEIPK-SLS 590
              +      G   L  L L    LQ  +    F  L  L  L L  N  +  +P  +  
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA-LQALPDDTFR 150

Query: 591 KCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSN 650
               L  L+L  N +S    R    L +L+ +++  N +    P  F  L  L  L L  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 651 NTI-------FGTLPSCFSPAYIEEIHLSKN 674
           N +          L +      ++ + L+ N
Sbjct: 211 NNLSALPTEALAPLRA------LQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.0 bits (203), Expect = 4e-17
 Identities = 48/204 (23%), Positives = 67/204 (32%), Gaps = 37/204 (18%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSL 155
             ++A+ FT    LE LDLS N     V+         L  L  L LD            
Sbjct: 69  ARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT---FHGLGRLHTLHLDRCGLQELGPGLF 125

Query: 156 GGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLK 215
            GL++L+ L L DN L  ++       L NL  L +  N I ++  P+       L +L 
Sbjct: 126 RGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSV--PERA--FRGLHSLD 180

Query: 216 FLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLS 275
            L L  N        +   L  L  L L  N                           LS
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN--------------------------LS 214

Query: 276 SWSVGINTGLDSLSNLEELDMTNN 299
           +        L  L  L+ L + +N
Sbjct: 215 ALPTEA---LAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 81.2 bits (201), Expect = 8e-17
 Identities = 55/252 (21%), Positives = 82/252 (32%), Gaps = 28/252 (11%)

Query: 423 DLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSL----FGSFRMPIHSHQKLATLDV 478
             + + L    +S   P        NL  L L +N L      +F         L  LD+
Sbjct: 33  ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAF----TGLALLEQLDL 87

Query: 479 STNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPS-SFADMKMLKSLDISYNQLTGEIP 537
           S N     +       L  L  L+L R      +    F  +  L+ L +  N L   +P
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALP 145

Query: 538 DRMAIGCFSLEILALSNNNLQG---HIFSKKFNLTNLMRLQLDGNKFIGEIPK-SLSKCY 593
           D       +L  L L  N +       F     L +L RL L  N+ +  +   +     
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFR---GLHSLDRLLLHQNR-VAHVHPHAFRDLG 201

Query: 594 LLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLE-GPIPIEFCQLDYLKILDLSNNT 652
            L  LYL  N+LS      L  L AL+ + + +N           C+   L    L    
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD------CRARPLW-AWLQKFR 254

Query: 653 IFGTLPSCFSPA 664
              +   C  P 
Sbjct: 255 GSSSEVPCSLPQ 266

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 43/196 (21%), Positives = 69/196 (35%), Gaps = 19/196 (9%)

Query: 569 TNLMRLQLDGNKFIGEIP-KSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNN 627
               R+ L GN+ I  +P  S   C  L  L+L  N L+         L+ LE + + +N
Sbjct: 32  AASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 628 NLEGPIPIE-FCQLDYLKILDLSNNTI-------FGTLPSCFSPAYIEEIHLSKNKIEGR 679
                +    F  L  L  L L    +       F  L +      ++ ++L  N ++  
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA------LQYLYLQDNALQAL 144

Query: 680 LESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQ-LKEV 738
            +        L  L L  N +          L  L  LLL  N +   +     + L  +
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRL 203

Query: 739 RLIDLSHNNLSGHIPP 754
             + L  NNLS  +P 
Sbjct: 204 MTLYLFANNLS-ALPT 218

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 50/244 (20%), Positives = 85/244 (34%), Gaps = 52/244 (21%)

Query: 178 KGLDSL-----SNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSL 232
           +GL ++     +  + + +  N I ++  P          NL  L L  N       ++ 
Sbjct: 21  QGLQAVPVGIPAASQRIFLHGNRISHV--PAAS--FRACRNLTILWLHSNVLARIDAAAF 76

Query: 233 GGLSSLRILSLADNRFNGSIDIKGKQASSILRVPS--FVDLVSLSSWSVGIN-------T 283
            GL+ L  L L+DN             + +  V    F  L  L +  +           
Sbjct: 77  TGLALLEQLDLSDN-------------AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG 123

Query: 284 GLDSLSNLEELDMTNNAINNLVVPKD-YRCLRKLNTLYLGG--IAMIDGSKVLQSIGSLP 340
               L+ L+ L + +NA+  L  P D +R L  L  L+L G  I+ +       +   L 
Sbjct: 124 LFRGLAALQYLYLQDNALQAL--PDDTFRDLGNLTHLFLHGNRISSVPER----AFRGLH 177

Query: 341 SLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSI-----ASFTSLKYL 395
           SL  L  L  N    +      +   L  L      L  +  L ++     A   +L+YL
Sbjct: 178 SLDRLL-LHQNRVAHVHPHAFRDLGRLMTL-----YLFANN-LSALPTEALAPLRALQYL 230

Query: 396 SIRG 399
            +  
Sbjct: 231 RLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 51/266 (19%), Positives = 86/266 (32%), Gaps = 61/266 (22%)

Query: 201 VPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQAS 260
           VP G+      +  + + L  N  +    +S     +L IL L  N              
Sbjct: 26  VPVGI-----PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV------------- 67

Query: 261 SILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLY 320
                        L+            L+ LE+LD+++NA    V P  +  L +L+TL+
Sbjct: 68  -------------LARIDAAA---FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111

Query: 321 LGG--IAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLH 378
           L    +  +           L +L+ LYL     +  + +    +  NL  L      LH
Sbjct: 112 LDRCGLQELGPG----LFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHL-----FLH 161

Query: 379 VSQLLQSI-----ASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLN 433
            ++ + S+         SL  L +        +       F         L  + L   N
Sbjct: 162 GNR-ISSVPERAFRGLHSLDRLLLHQN----RVAHVHPHAF----RDLGRLMTLYLFANN 212

Query: 434 LSGKFPNWLVENNTNLKTLLLANNSL 459
           LS   P   +     L+ L L +N  
Sbjct: 213 LS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 2/89 (2%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
           I L  N+++            +  L L  N L       F+ L  +E LDLS N  L  +
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96

Query: 882 PPQLIV-LNTLAVFRVANNNLSGKIPDRV 909
            P     L  L    +    L  ++   +
Sbjct: 97  DPATFHGLGRLHTLHLDRCGLQ-ELGPGL 124

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 6/108 (5%)

Query: 823 DLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
            L  N L   +P      L  +  L L  N ++      F  L  ++ L L  N  +  +
Sbjct: 135 YLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHV 192

Query: 882 PPQLIV-LNTLAVFRVANNNLSGKIPDRV-AQFSTFEEDSYEGNPFLC 927
            P     L  L    +  NNLS  +P    A     +      NP++C
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVC 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 87.8 bits (218), Expect = 4e-19
 Identities = 52/268 (19%), Positives = 99/268 (36%), Gaps = 43/268 (16%)

Query: 106 FQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILS 165
           F +    +L   ++            + LN++  ++ +++   +     +  L ++  L 
Sbjct: 23  FAETIKDNLKKKSV------TDAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLF 74

Query: 166 LADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFN 225
           L  N+L    DIK L +L NL  L +  N + +      L  L  L  LK L L++N  +
Sbjct: 75  LNGNKLT---DIKPLANLKNLGWLFLDENKVKD------LSSLKDLKKLKSLSLEHNGIS 125

Query: 226 SSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGIN--- 282
               + L  L  L  L L +N+              I  +     L  L + S+  N   
Sbjct: 126 D--INGLVHLPQLESLYLGNNK--------------ITDITVLSRLTKLDTLSLEDNQIS 169

Query: 283 --TGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLP 340
               L  L+ L+ L ++ N I++L   +    L+ L+ L L     ++     QS   L 
Sbjct: 170 DIVPLAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFSQECLNKPINHQSN--LV 224

Query: 341 SLKTLYLLFTNFKGTIVNQELHNFTNLE 368
              T+     +     +  +  ++    
Sbjct: 225 VPNTVKNTDGSLVTPEIISDDGDYEKPN 252

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 81.6 bits (202), Expect = 6e-17
 Identities = 59/250 (23%), Positives = 89/250 (35%), Gaps = 57/250 (22%)

Query: 103 FTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLR 162
                 +  L L+ N +        ++ L+ L NL +L LD N       SSL  L  L+
Sbjct: 64  IQYLPNVTKLFLNGNKL------TDIKPLANLKNLGWLFLDEN--KVKDLSSLKDLKKLK 115

Query: 163 ILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYN 222
            LSL  N ++   DI GL  L  LE L +  N I +      +  LS L+ L  L L+ N
Sbjct: 116 SLSLEHNGIS---DINGLVHLPQLESLYLGNNKITD------ITVLSRLTKLDTLSLEDN 166

Query: 223 SFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGIN 282
             +      L GL+ L+ L L+ N                           +S       
Sbjct: 167 QISD--IVPLAGLTKLQNLYLSKNH--------------------------ISDLR---- 194

Query: 283 TGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKV-LQSIGSLPS 341
             L  L NL+ L++ +    N  +      L   NT+        DGS V  + I     
Sbjct: 195 -ALAGLKNLDVLELFSQECLNKPINHQSN-LVVPNTVKN-----TDGSLVTPEIISDDGD 247

Query: 342 LKTLYLLFTN 351
            +   + +  
Sbjct: 248 YEKPNVKWHL 257

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 75.9 bits (187), Expect = 5e-15
 Identities = 59/323 (18%), Positives = 107/323 (33%), Gaps = 64/323 (19%)

Query: 148 NNSI--FSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGL 205
              I    S    +     +L    +    D    + L++++++  + + I +      +
Sbjct: 11  PTPIKQIFSDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIKS------V 61

Query: 206 ERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRV 265
           + +  L N+  L L+ N         L  L +L  L L +N+     D+           
Sbjct: 62  QGIQYLPNVTKLFLNGNKLTD--IKPLANLKNLGWLFLDENKVK---DL----------- 105

Query: 266 PSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIA 325
                            + L  L  L+ L + +N I+++        L +L +LYLG   
Sbjct: 106 -----------------SSLKDLKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNK 145

Query: 326 MIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVN-QELHNFTNLEELLLVKSDLHVSQLLQ 384
           + D    +  +  L  L TL L        I +   L   T L+ L L  S  H+S  L+
Sbjct: 146 ITD----ITVLSRLTKLDTLSLEDNQ----ISDIVPLAGLTKLQNLYL--SKNHISD-LR 194

Query: 385 SIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVE 444
           ++A   +L  L +                    L   + +KN D S +       +   E
Sbjct: 195 ALAGLKNLDVLELFSQECL-----NKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYE 249

Query: 445 NNTNLKTLLLANNSLFGSFRMPI 467
                  L    N +   F  P+
Sbjct: 250 KPNVKWHLPEFTNEVSFIFYQPV 272

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 47/236 (19%), Positives = 86/236 (36%), Gaps = 16/236 (6%)

Query: 495 LSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSN 554
            +  +  NL + +       +  ++  +  +  + + +   +         ++  L L+ 
Sbjct: 23  FAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNG 77

Query: 555 NNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLG 614
           N L   I     NL NL  L LD NK + ++  SL     L  L L  N +S  I   L 
Sbjct: 78  NKLT-DIKPLA-NLKNLGWLFLDENK-VKDL-SSLKDLKKLKSLSLEHNGIS-DIN-GLV 131

Query: 615 NLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKN 674
           +L  LE + + NN +     +   +L  L  L L +N I   +        ++ ++LSKN
Sbjct: 132 HLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKN 188

Query: 675 KIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPI 730
            I   L ++      L  L+L               L   + +   +  +     I
Sbjct: 189 HIS-DLRALAGL-KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII 242

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 42/210 (20%), Positives = 84/210 (40%), Gaps = 18/210 (8%)

Query: 444 ENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNL 503
           +         L   S+  +  +  +    +  +  + +  +    ++   YL  +  L L
Sbjct: 21  DAFAETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDIKSVQGIQ---YLPNVTKLFL 75

Query: 504 SRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFS 563
           + N     I    A++K L  L +  N++  ++          L+ L+L +N +     +
Sbjct: 76  NGNKLT-DI-KPLANLKNLGWLFLDENKVK-DLSSLK--DLKKLKSLSLEHNGIS--DIN 128

Query: 564 KKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDII 623
              +L  L  L L  NK I +I   LS+   L  L L DN +S  +P  L  L+ L+++ 
Sbjct: 129 GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY 184

Query: 624 MPNNNLEGPIPIEFCQLDYLKILDLSNNTI 653
           +  N++     +    L  L +L+L +   
Sbjct: 185 LSKNHISDLRALA--GLKNLDVLELFSQEC 212

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 40/228 (17%)

Query: 522 LKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKF 581
               ++    +T  +         S++ +  +N++++         L N+ +L L+GNK 
Sbjct: 26  TIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIK--SVQGIQYLPNVTKLFLNGNK- 79

Query: 582 IGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLD 641
           + +I K L+    LG L+L +N +   +   L +L  L+ + + +N +     +    L 
Sbjct: 80  LTDI-KPLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGISDINGLV--HLP 134

Query: 642 YLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLH 701
            L+ L L NN I                      I       +     L TL L  N + 
Sbjct: 135 QLESLYLGNNKI--------------------TDITV-----LSRLTKLDTLSLEDNQIS 169

Query: 702 GSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLS 749
             I   +  L +L  L L+ N+I     +    LK + +++L      
Sbjct: 170 -DIVP-LAGLTKLQNLYLSKNHISDLRALA--GLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 46/275 (16%), Positives = 85/275 (30%), Gaps = 52/275 (18%)

Query: 361 LHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYH 420
              F    +  L K  +       +     S+  +      +K            + + +
Sbjct: 20  DDAFAETIKDNLKKKSV---TDAVTQNELNSIDQIIANNSDIKSV----------QGIQY 66

Query: 421 QHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVST 480
             ++  + L+   L+   P   + N  NL  L L  N +       +   +KL +L +  
Sbjct: 67  LPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEH 121

Query: 481 NFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRM 540
           N       +    +L  L  L L  N    +  +  + +  L +L +  NQ++       
Sbjct: 122 NGISDINGLV---HLPQLESLYLGNN--KITDITVLSRLTKLDTLSLEDNQIS------- 169

Query: 541 AIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYL 600
                 +  LA                LT L  L L  N  I ++ ++L+    L  L L
Sbjct: 170 -----DIVPLA---------------GLTKLQNLYLSKNH-ISDL-RALAGLKNLDVLEL 207

Query: 601 SDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPI 635
                  K      NL     +   + +L  P  I
Sbjct: 208 FSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII 242

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 48/327 (14%), Positives = 101/327 (30%), Gaps = 80/327 (24%)

Query: 283 TGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSL 342
              D+ +   + ++   ++ + V   +   + ++       I  + G      I  LP++
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQII-ANNSDIKSVQG------IQYLPNV 70

Query: 343 KTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVL 402
             L+L           + L N  NL  L L ++ +     L S+     LK LS+    +
Sbjct: 71  TKLFLNGNKLTDI---KPLANLKNLGWLFLDENKVKD---LSSLKDLKKLKSLSLEHNGI 124

Query: 403 KGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGS 462
                                    D++ L            +   L++L L NN +   
Sbjct: 125 S------------------------DINGL-----------VHLPQLESLYLGNNKI--- 146

Query: 463 FRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKML 522
                     +  L                  L+ L  L+L  N    S     A +  L
Sbjct: 147 --------TDITVLS----------------RLTKLDTLSLEDNQI--SDIVPLAGLTKL 180

Query: 523 KSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFI 582
           ++L +S N ++ ++      G  +L++L L +        + + NL     ++      +
Sbjct: 181 QNLYLSKNHIS-DLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

Query: 583 GEIPKSLSKCYLLGGLYLSDNHLSGKI 609
                S    Y    +       + ++
Sbjct: 238 TPEIISDDGDYEKPNVKWHLPEFTNEV 264

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 37/166 (22%), Positives = 70/166 (42%), Gaps = 12/166 (7%)

Query: 598 LYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTL 657
             L    ++  +      L++++ II  N++++    I+   L  +  L L+ N +   +
Sbjct: 29  DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNGNKL-TDI 83

Query: 658 PSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYL 717
               +   +  + L +NK++  L S+      L +L L +N +  S    +  LPQL  L
Sbjct: 84  KPLANLKNLGWLFLDENKVK-DLSSLKDL-KKLKSLSLEHNGI--SDINGLVHLPQLESL 139

Query: 718 LLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNE 763
            L NN I     +   +L ++  + L  N +S  I P    T L  
Sbjct: 140 YLGNNKITDITVLS--RLTKLDTLSLEDNQIS-DIVPLAGLTKLQN 182

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 88.0 bits (218), Expect = 6e-19
 Identities = 56/305 (18%), Positives = 94/305 (30%), Gaps = 33/305 (10%)

Query: 428 DLSHLNLSGKFPNW-------------LVENNTNLKTLLLANNSLFGSFRMPIHSHQ-KL 473
           +    N S   P+W             L     +L+ LL   ++     +         L
Sbjct: 11  ESCSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSL 70

Query: 474 ATLDVSTNFFRGHIPVEIGTYL--SGLMDLNLSRNAFNGSIPSSFADMKM--LKSLDISY 529
             L V        I       L  SGL +L L      G+ P    +     L  L++  
Sbjct: 71  KRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN 130

Query: 530 NQLTGEIPDRMAIGCF---SLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIP 586
                       +  +    L++L+++  +       +      L  L L  N  +GE  
Sbjct: 131 VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

Query: 587 KSLSKCYL----LGGLYLSDNH---LSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQ 639
              + C L    L  L L +      SG           L+ + + +N+L        C 
Sbjct: 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

Query: 640 -LDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYN 698
               L  L+LS   +   +P       +  + LS N+++ R  S     P +  L L  N
Sbjct: 251 WPSQLNSLNLSFTGL-KQVPKGLPAK-LSVLDLSYNRLD-RNPSPDEL-PQVGNLSLKGN 306

Query: 699 CLHGS 703
               S
Sbjct: 307 PFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.0 bits (205), Expect = 3e-17
 Identities = 53/283 (18%), Positives = 89/283 (31%), Gaps = 24/283 (8%)

Query: 337 GSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIA--SFTSLKY 394
           G   SL+ L              ++    +L+ L +  + +    L  ++     + L+ 
Sbjct: 40  GGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQE 99

Query: 395 LSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVE----NNTNLK 450
           L++    + G          P       DL  ++L +++ +     WL E        LK
Sbjct: 100 LTLENLEVTGT------APPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLK 152

Query: 451 TLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVE---IGTYLSGLMDLNLSRNA 507
            L +A           +     L+TLD+S N   G   +           L  L L    
Sbjct: 153 VLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212

Query: 508 FN---GSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSK 564
                G   +  A    L+ LD+S+N L              L  L LS   L+  +   
Sbjct: 213 METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271

Query: 565 KFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSG 607
                 L  L L  N+ +   P    +   +G L L  N    
Sbjct: 272 LP--AKLSVLDLSYNR-LDRNPSPD-ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.0 bits (192), Expect = 1e-15
 Identities = 37/156 (23%), Positives = 55/156 (35%), Gaps = 12/156 (7%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFN---NSIF 152
            + +      F  L +LDLS N   G           +   L+ L L +           
Sbjct: 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221

Query: 153 SSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLS 212
           +       L+ L L+ N L  +      D  S L  L++S+  +    VP+GL      +
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ--VPKGL-----PA 274

Query: 213 NLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRF 248
            L  L L YN  +     S   L  +  LSL  N F
Sbjct: 275 KLSVLDLSYNRLDR--NPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.7 bits (186), Expect = 7e-15
 Identities = 39/260 (15%), Positives = 80/260 (30%), Gaps = 20/260 (7%)

Query: 108 QLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLA 167
            LE L    +  A   +   + +   L  L                 + G+S L+ L+L 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 168 DNRLNGSIDIKGLD-SLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNS 226
           +  + G+     L+ +  +L  L++   +           +      LK L +      +
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163

Query: 227 SIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLV--SLSSWSVGINTG 284
                +    +L  L L+DN   G   +              + L    + + S   +  
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 285 LDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG--IAMIDGS------------ 330
             +   L+ LD+++N++ +           +LN+L L    +  +               
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSY 283

Query: 331 ---KVLQSIGSLPSLKTLYL 347
                  S   LP +  L L
Sbjct: 284 NRLDRNPSPDELPQVGNLSL 303

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 51/295 (17%), Positives = 98/295 (33%), Gaps = 20/295 (6%)

Query: 173 GSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSL 232
           G+ D++      +LE L    +   +L     + +  +L  L        S        +
Sbjct: 32  GAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRV 91

Query: 233 GGLSSLRILSLADNRFNGSIDIKGKQASSI-LRVPSFVDLVSLSSWSVGINTGLDSLSNL 291
            G+S L+ L+L +    G+      +A+   L + +  ++   +  +            L
Sbjct: 92  LGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGL 151

Query: 292 EELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSI--GSLPSLKTLYLLF 349
           + L +      N       R    L+TL L     +    ++ ++     P+L+ L L  
Sbjct: 152 KVLSIAQAHSLNFSCE-QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN 210

Query: 350 TNFK--GTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALH 407
              +    + +        L+ L L  + L  +    S    + L  L++    LK    
Sbjct: 211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK---- 266

Query: 408 GQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGS 462
                  PK L  +  L  +DLS+  L    P    +    +  L L  N    S
Sbjct: 267 -----QVPKGLPAK--LSVLDLSYNRLDR-NP--SPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.9 bits (158), Expect = 3e-11
 Identities = 43/237 (18%), Positives = 72/237 (30%), Gaps = 32/237 (13%)

Query: 531 QLTGEIPDRMAIGCFSLEI-LALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSL 589
              G     +  G  SLE  L   +       F+      +L RL +   +    I    
Sbjct: 29  NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88

Query: 590 SKCYLLGG---LYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKIL 646
            +   + G   L L +  ++G  P  L   +                      L+ L + 
Sbjct: 89  LRVLGISGLQELTLENLEVTGTAPPPLLEATGP-------------------DLNILNLR 129

Query: 647 DLSNNTIFGTLPSCFS--PAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSI 704
           ++S  T    L          ++ + +++          +   P L TLDLS N   G  
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189

Query: 705 PTWI----DRLPQLSYLLLANNY---IEGEIPIQICQLKEVRLIDLSHNNLSGHIPP 754
                    + P L  L L N       G          +++ +DLSHN+L      
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 49/307 (15%), Positives = 89/307 (28%), Gaps = 50/307 (16%)

Query: 612 WLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTI----FGTLPSCFSPAYIE 667
           + G  S    +   +   +     +  +   LK L +    I              + ++
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 668 EIHLSKNKIEGR--LESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQ-----LSYLLLA 720
           E+ L   ++ G      +    P L  L+L  N    +   W+  L Q     L  L +A
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLR-NVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 721 NNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDAS 780
             +       Q+     +  +DLS N   G                              
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERG--------------------------- 190

Query: 781 TYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSG---IDLSCNKLTGEIPTQI 837
             ++ ++ P   P  +   ++             +  +      +DLS N L        
Sbjct: 191 --LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

Query: 838 -GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRV 896
             + +++ +LNLS   L        + L     LDLSYN L     P    L  +    +
Sbjct: 249 CDWPSQLNSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLDRN--PSPDELPQVGNLSL 303

Query: 897 ANNNLSG 903
             N    
Sbjct: 304 KGNPFLD 310

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 83.9 bits (208), Expect = 6e-18
 Identities = 44/220 (20%), Positives = 80/220 (36%), Gaps = 40/220 (18%)

Query: 106 FQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILS 165
                  +L   ++        +     L+ ++    D++   +   + +   ++L+ L 
Sbjct: 18  LANAVKQNLGKQSV------TDLVSQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELH 69

Query: 166 LADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFN 225
           L+ N+++   D+  L  L+ LEEL ++ N + NL    G+        L  L LD N   
Sbjct: 70  LSHNQIS---DLSPLKDLTKLEELSVNRNRLKNL---NGIPSA----CLSRLFLDNNELR 119

Query: 226 SSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGIN--- 282
                SL  L +L ILS+ +N+              +  +     L  L    +  N   
Sbjct: 120 D--TDSLIHLKNLEILSIRNNK--------------LKSIVMLGFLSKLEVLDLHGNEIT 163

Query: 283 --TGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLY 320
              GL  L  +  +D+T     N  V      L   NT+ 
Sbjct: 164 NTGGLTRLKKVNWIDLTGQKCVNEPVKYQPE-LYITNTVK 202

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 49/234 (20%), Positives = 79/234 (33%), Gaps = 44/234 (18%)

Query: 148 NNSI--FSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGL 205
              I       GL++    +L    +    D+     LS ++  +   + I +      L
Sbjct: 6   PTPINQVFPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQS------L 56

Query: 206 ERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRV 265
             +   +NLK L L +N    S  S L  L+ L  LS+  NR               L+ 
Sbjct: 57  AGMQFFTNLKELHLSHN--QISDLSPLKDLTKLEELSVNRNR---------------LKN 99

Query: 266 PSFVDLVSLSSWSVGIN-----TGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLY 320
            + +    LS   +  N       L  L NLE L + NN + ++        L KL  L 
Sbjct: 100 LNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI---VMLGFLSKLEVLD 156

Query: 321 LGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVK 374
           L G  + +       +  L  +  + L         VN+ +     L     VK
Sbjct: 157 LHGNEITN----TGGLTRLKKVNWIDLTGQK----CVNEPVKYQPELYITNTVK 202

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 66.6 bits (163), Expect = 5e-12
 Identities = 41/168 (24%), Positives = 59/168 (35%), Gaps = 34/168 (20%)

Query: 106 FQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNY-----------------FN 148
           F  L+ L LS N I        +  L  L  L+ L ++ N                   N
Sbjct: 62  FTNLKELHLSHNQI------SDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDN 115

Query: 149 NSI--FSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLE 206
           N +    SL  L +L ILS+ +N+L     I  L  LS LE LD+  N I N        
Sbjct: 116 NELRDTDSLIHLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDLHGNEITN------TG 166

Query: 207 RLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDI 254
            L+ L  + ++ L      +        L     +   D R+     I
Sbjct: 167 GLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYI 214

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.5 bits (155), Expect = 5e-11
 Identities = 43/253 (16%), Positives = 87/253 (34%), Gaps = 58/253 (22%)

Query: 176 DIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGL 235
            +     L+N  + ++   ++ +      L     LS ++    D ++  S   + +   
Sbjct: 11  QVFPDPGLANAVKQNLGKQSVTD------LVSQKELSGVQNFNGDNSNIQS--LAGMQFF 62

Query: 236 SSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELD 295
           ++L+ L L+ N           Q S +                    + L  L+ LEEL 
Sbjct: 63  TNLKELHLSHN-----------QISDL--------------------SPLKDLTKLEELS 91

Query: 296 MTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGT 355
           +  N + NL           L+ L+L    + D      S+  L +L+ L +     K +
Sbjct: 92  VNRNRLKNLNGIP----SACLSRLFLDNNELRD----TDSLIHLKNLEILSIRNNKLK-S 142

Query: 356 IVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFP 415
           IV   L   + LE L L      ++     +     + ++ + G          +   + 
Sbjct: 143 IVM--LGFLSKLEVLDL--HGNEITN-TGGLTRLKKVNWIDLTGQKCV-----NEPVKYQ 192

Query: 416 KFLYHQHDLKNVD 428
             LY  + +K+ D
Sbjct: 193 PELYITNTVKDPD 205

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 32/208 (15%)

Query: 546 SLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHL 605
           +     L   ++   + S+K  L+ +     D +  I  +   +     L  L+LS N +
Sbjct: 20  NAVKQNLGKQSVT-DLVSQK-ELSGVQNFNGDNSN-IQSL-AGMQFFTNLKELHLSHNQI 75

Query: 606 SGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTI-----FGTLPSC 660
           S   P  L +L+ LE++ +  N L+    I    L     L L NN +        L + 
Sbjct: 76  SDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACL---SRLFLDNNELRDTDSLIHLKN- 129

Query: 661 FSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLA 720
                +E + +  NK++  +  +      L  LDL  N +  +    + RL +++++ L 
Sbjct: 130 -----LEILSIRNNKLK-SIVMLGFL-SKLEVLDLHGNEITNTGG--LTRLKKVNWIDLT 180

Query: 721 NNYIEGEIPIQICQLKEVRLIDLSHNNL 748
                     +          +L   N 
Sbjct: 181 GQ--------KCVNEPVKYQPELYITNT 200

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 27/183 (14%), Positives = 67/183 (36%), Gaps = 36/183 (19%)

Query: 567 NLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPN 626
            L N ++  L     + ++  S  +   +      ++++   +   +   + L+++ + +
Sbjct: 17  GLANAVKQNLGKQS-VTDL-VSQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSH 72

Query: 627 NNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHY 686
           N +    P++   L  L+ L ++ N +                      + G + S    
Sbjct: 73  NQISDLSPLK--DLTKLEELSVNRNRL--------------------KNLNG-IPS---- 105

Query: 687 SPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHN 746
              L  L L  N L       +  L  L  L + NN ++  + +    L ++ ++DL  N
Sbjct: 106 -ACLSRLFLDNNEL--RDTDSLIHLKNLEILSIRNNKLKSIVMLG--FLSKLEVLDLHGN 160

Query: 747 NLS 749
            ++
Sbjct: 161 EIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 43/213 (20%), Positives = 74/213 (34%), Gaps = 40/213 (18%)

Query: 424 LKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFF 483
           ++N +  + N+        ++  TNLK L L++N +  S   P+    KL  L V+ N  
Sbjct: 43  VQNFNGDNSNIQ-SLAG--MQFFTNLKELHLSHNQI--SDLSPLKDLTKLEELSVNRN-- 95

Query: 484 RGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIG 543
              +    G   + L  L L  N        S   +K L+ L I  N+L           
Sbjct: 96  --RLKNLNGIPSACLSRLFLDNN--ELRDTDSLIHLKNLEILSIRNNKLK---------- 141

Query: 544 CFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDN 603
             S+ +L                 L+ L  L L GN+ I      L++   +  + L+  
Sbjct: 142 --SIVMLG---------------FLSKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTGQ 182

Query: 604 HLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIE 636
               +  ++   L     +  P+     P  I 
Sbjct: 183 KCVNEPVKYQPELYITNTVKDPDGRWISPYYIS 215

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 85.0 bits (210), Expect = 4e-17
 Identities = 54/293 (18%), Positives = 91/293 (31%), Gaps = 42/293 (14%)

Query: 347 LLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSI--ASFTSLKYLSIRGCVLKG 404
             F N            +   E+  L     + ++ +  +          L +    L  
Sbjct: 16  NSFYNTISGTYADYFSAWDKWEKQAL--PGENRNEAVSLLKECLINQFSELQLNRLNLS- 72

Query: 405 ALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFR 464
                   + P  L  Q  +  ++++   L    P        +L+ L   +N L  +  
Sbjct: 73  --------SLPDNLPPQ--ITVLEITQNALI-SLPELP----ASLEYLDACDNRL-STLP 116

Query: 465 MPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKS 524
               S   L  LDV  N     +P         L  +N   N     +P        L+ 
Sbjct: 117 ELPAS---LKHLDVDNNQLT-MLPELPA----LLEYINADNNQLT-MLPEL---PTSLEV 164

Query: 525 LDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQG---HIFSKKFNLTNLMRLQLDGNKF 581
           L +  NQLT  +P+       SLE L +S N L+           +    +  +   N+ 
Sbjct: 165 LSVRNNQLT-FLPELPE----SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR- 218

Query: 582 IGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIP 634
           I  IP+++        + L DN LS +I   L   +A  D   P         
Sbjct: 219 ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDG 271

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.9 bits (181), Expect = 1e-13
 Identities = 62/397 (15%), Positives = 108/397 (27%), Gaps = 106/397 (26%)

Query: 524 SLDISYNQLTGEIPDRMAIGCFSLEILALSNNNL-QGHIFSKKFNLTNLMRLQLDGNKFI 582
           S +  YN ++              E  AL   N  +     K+  +     LQL+    +
Sbjct: 14  SQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLN-L 71

Query: 583 GEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDY 642
             +P +L     +  L ++ N L   +P    +L                          
Sbjct: 72  SSLPDNLPP--QITVLEITQNALI-SLPELPASL-------------------------- 102

Query: 643 LKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHG 702
            + LD  +N                           RL ++      L  LD+  N L  
Sbjct: 103 -EYLDACDN---------------------------RLSTLPELPASLKHLDVDNNQLT- 133

Query: 703 SIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVN-TAL 761
            +P        L Y+   NN +   +P     L+    + + +N L+  +P    +  AL
Sbjct: 134 MLPELP---ALLEYINADNNQLT-MLPELPTSLEV---LSVRNNQLT-FLPELPESLEAL 185

Query: 762 NEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSG 821
           +         + S         LP+V        E E                       
Sbjct: 186 DVST----NLLES---------LPAVPVRNHHSEETEIF--------------------- 211

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
                N++T  IP  I  L     + L  N L+ +      + +  +       +     
Sbjct: 212 FRCRENRIT-HIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIYFSMS 269

Query: 882 PPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEED 918
             Q   L+      V       K  D    +  FE +
Sbjct: 270 DGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHE 306

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 65.0 bits (158), Expect = 7e-11
 Identities = 48/256 (18%), Positives = 87/256 (33%), Gaps = 53/256 (20%)

Query: 100 ASLFTPFQQLESLDLSWNNIAGCVENEGVERL--SRLNNLKFLLLDSNYFNNSIFSSLGG 157
           A  F+ + + E   L   N      NE V  L    +N    L L+    + S+  +L  
Sbjct: 27  ADYFSAWDKWEKQALPGENR-----NEAVSLLKECLINQFSELQLNRLNLS-SLPDNLP- 79

Query: 158 LSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFL 217
              + +L +  N L  S+     +  ++LE LD   N +  L            ++LK L
Sbjct: 80  -PQITVLEITQNAL-ISLP----ELPASLEYLDACDNRLSTL--------PELPASLKHL 125

Query: 218 RLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVP-SFVDLVSLSS 276
            +D N         L   + L  ++  +N+              +  +P     L  LS 
Sbjct: 126 DVDNNQLTM--LPEL--PALLEYINADNNQ--------------LTMLPELPTSLEVLSV 167

Query: 277 WSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGS-----K 331
            +  +    +   +LE LD++ N + +L  P             +               
Sbjct: 168 RNNQLTFLPELPESLEALDVSTNLLESL--PAVPVRNHHSEETEI----FFRCRENRITH 221

Query: 332 VLQSIGSLPSLKTLYL 347
           + ++I SL    T+ L
Sbjct: 222 IPENILSLDPTCTIIL 237

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.4 bits (120), Expect = 3e-06
 Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 11/145 (7%)

Query: 823 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIES----LDLSYNLLL 878
            +  N+LT  +P     L     L++S N L  ++P         E          N  +
Sbjct: 166 SVRNNQLT-FLPELPESLEA---LDVSTNLLE-SLPAVPVRNHHSEETEIFFRCREN-RI 219

Query: 879 GKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDN 938
             IP  ++ L+      + +N LS +I + ++Q  T + D +    +       ++    
Sbjct: 220 THIPENILSLDPTCTIILEDNPLSSRIRESLSQQ-TAQPDYHGPRIYFSMSDGQQNTLHR 278

Query: 939 GLTTATPEAYTENKEGDSLIDMDSF 963
            L  A    + ENK+ D      +F
Sbjct: 279 PLADAVTAWFPENKQSDVSQIWHAF 303

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.0 bits (119), Expect = 3e-06
 Identities = 49/312 (15%), Positives = 95/312 (30%), Gaps = 74/312 (23%)

Query: 106 FQQLESLDLSWNNIAGCVENEGVERL-SRLNNLKFLLLDSNYF----------------N 148
              LE LD   N +           L     +LK L +D+N                  N
Sbjct: 99  PASLEYLDACDNRL---------STLPELPASLKHLDVDNNQLTMLPELPALLEYINADN 149

Query: 149 NSIFSSLGGLSSLRILSLADNRLNGSIDIKGL-DSLSNLEELDMSYNAIDNLVVPQGLER 207
           N +       +SL +LS+ +N+L        L +   +LE LD+S N +++L  P    R
Sbjct: 150 NQLTMLPELPTSLEVLSVRNNQLTF------LPELPESLEALDVSTNLLESL--PAVPVR 201

Query: 208 LS------------------------TLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSL 243
                                     +L     + L+ N  +S I  SL   ++      
Sbjct: 202 NHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG 261

Query: 244 ADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWS-VGINTGLDSLSNLEELDMTNNAIN 302
               F+ S   +        R  +              ++    +  + E  +  +  ++
Sbjct: 262 PRIYFSMSDGQQNTLH----RPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLD 317

Query: 303 NLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSL-KTLYLLFTNFKGTIVNQEL 361
            L      R                  +  L+ + +   L +  + +  +   +  ++  
Sbjct: 318 RLSDTVSARNTSGFRE---------QVAAWLEKLSASAELRQQSFAVAADATESCEDRVA 368

Query: 362 HNFTNLEELLLV 373
             + NL + LLV
Sbjct: 369 LTWNNLRKTLLV 380

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.1 bits (109), Expect = 5e-05
 Identities = 56/352 (15%), Positives = 114/352 (32%), Gaps = 81/352 (23%)

Query: 158 LSSLRILSLADNRLNGSIDIKGLD---SLSNLEELDMSYNAIDNLVVPQGLERLSTLSNL 214
           L      SL+ N    +I     D   +    E+  +     +  V    L +   ++  
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAV---SLLKECLINQF 61

Query: 215 KFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSL 274
             L+L+  +  SS+  +L     + +L +  N                        L+SL
Sbjct: 62  SELQLNRLNL-SSLPDNLP--PQITVLEITQNA-----------------------LISL 95

Query: 275 SSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQ 334
                      +  ++LE LD  +N ++ L  P+    L+ L+         +D ++ L 
Sbjct: 96  P----------ELPASLEYLDACDNRLSTL--PELPASLKHLD---------VDNNQ-LT 133

Query: 335 SIGSLP-SLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLK 393
            +  LP  L+ +         T++ +     T+LE L +   +  ++ L +      SL+
Sbjct: 134 MLPELPALLEYINADNNQL--TMLPELP---TSLEVLSV--RNNQLTFLPELP---ESLE 183

Query: 394 YLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSG----KFPNWLVENNTNL 449
            L +   +L+         + P      H  +  ++             P  ++ +    
Sbjct: 184 ALDVSTNLLE---------SLPAVPVRNHHSEETEI-FFRCRENRITHIPENIL-SLDPT 232

Query: 450 KTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDL 501
            T++L +N L  S      S Q           +      +  T    L D 
Sbjct: 233 CTIILEDNPL-SSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADA 283

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 84.2 bits (209), Expect = 4e-17
 Identities = 91/498 (18%), Positives = 164/498 (32%), Gaps = 88/498 (17%)

Query: 107 QQLESLDLSWNNIAGCVENEGVERLSR-LNNLKFLLLDSNYFNNSIFSSLGGLSSLRILS 165
             ++SLD+    +     +     L   L   + + LD               +  + +S
Sbjct: 3   LDIQSLDIQCEEL----SDARWAELLPLLQQCQVVRLDDCGL---------TEARCKDIS 49

Query: 166 LADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVP---QGLERLSTLSNLKFLRLDYN 222
            A            L     L EL++  N + ++ V    QGL+  S    ++ L L   
Sbjct: 50  SA------------LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC--KIQKLSLQNC 95

Query: 223 SFN----SSIFSSLGGLSSLRILSLADNRFNGS----IDIKGKQASSILRVPSFVDLVSL 274
                    + S+L  L +L+ L L+DN    +    +          L         SL
Sbjct: 96  CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEY-CSL 154

Query: 275 SSWSVG-INTGLDSLSNLEELDMTNNAINNLVVP------KDYRCLRKLNTLYLGGIAM- 326
           S+ S   + + L +  + +EL ++NN IN   V       KD  C  +L  L L    + 
Sbjct: 155 SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPC--QLEALKLESCGVT 212

Query: 327 IDGSKVL-QSIGSLPSLKTLYLLFTNFKGT----IVNQELHNFTNLEELLLVK---SDLH 378
            D  + L   + S  SL+ L L            +    LH  + L  L + +   +   
Sbjct: 213 SDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKG 272

Query: 379 VSQLLQSIASFTSLKYLSIRGCVL--KGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSG 436
              L + + +  SLK LS+ G  L  +GA    +    P        L+++ +   + + 
Sbjct: 273 CGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEP-----GCQLESLWVKSCSFTA 327

Query: 437 KFPNWLVE---NNTNLKTLLLANNSLFGS-----FRMPIHSHQKLATLDVSTNFFRGHIP 488
              +        N  L  L ++NN L  +      +        L  L ++         
Sbjct: 328 ACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSC 387

Query: 489 VEIGTYLSG---LMDLNLSRNAFNGSIPSSFADMKM-----LKSLDISYNQLTGEIPDRM 540
             +   L     L +L+LS N    +      +        L+ L +     + E     
Sbjct: 388 SSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE----- 442

Query: 541 AIGCFSLEILALSNNNLQ 558
                 L+ L     +L+
Sbjct: 443 --MEDRLQALEKDKPSLR 458

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 78.9 bits (195), Expect = 2e-15
 Identities = 87/473 (18%), Positives = 157/473 (33%), Gaps = 85/473 (17%)

Query: 184 SNLEELDMSYNAIDNLVVPQGLERL-STLSNLKFLRLDYNSFN----SSIFSSLGGLSSL 238
            +++ LD+    +           L   L   + +RLD           I S+L    +L
Sbjct: 3   LDIQSLDIQCEELS----DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPAL 58

Query: 239 RILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGIN--------TGLDSLSN 290
             L+L  N      D+        L+ PS   +  LS  +  +         + L +L  
Sbjct: 59  AELNLRSNELG---DVGVHCVLQGLQTPSCK-IQKLSLQNCCLTGAGCGVLSSTLRTLPT 114

Query: 291 LEELDMTNNAINNLVVPKDYRCLR----KLNTLYLGG--IAMIDGSKVLQSIGSLPSLKT 344
           L+EL +++N + +  +      L     +L  L L    ++      +   + + P  K 
Sbjct: 115 LQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE 174

Query: 345 LYLLFTNFKGTIVNQEL-----HNFTNLEELLLVK---SDLHVSQLLQSIASFTSLKYLS 396
           L +   +     V + L      +   LE L L     +  +   L   +AS  SL+ L+
Sbjct: 175 LTVSNNDINEAGV-RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233

Query: 397 IRGCVL--KGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVE---NNTNLKT 451
           +    L   G      G      L+    L+ + +    ++ K    L        +LK 
Sbjct: 234 LGSNKLGDVGMAELCPG-----LLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288

Query: 452 LLLANNSLFGS-----FRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSG---LMDLNL 503
           L LA N L            +    +L +L V +  F         + L+    L++L +
Sbjct: 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI 348

Query: 504 SRNAFNGSIPSSFADM-----KMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQ 558
           S N    +              +L+ L ++   ++          C SL    L  N   
Sbjct: 349 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS-------SCSSL-AATLLAN--- 397

Query: 559 GHIFSKKFNLTNLMRLQLDGNKF----IGEIPKSLSKC-YLLGGLYLSDNHLS 606
                      +L  L L  N      I ++ +S+ +   LL  L L D + S
Sbjct: 398 ----------HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 68.5 bits (168), Expect = 5e-12
 Identities = 61/386 (15%), Positives = 131/386 (33%), Gaps = 65/386 (16%)

Query: 423 DLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSL-------FGSFRMPIHSHQKLAT 475
           D++++D+    LS      L+      + + L +  L         S    +  +  LA 
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA---LRVNPALAE 60

Query: 476 LDVSTNFFRGHIPVEIGTYLS----GLMDLNLSRNAFN----GSIPSSFADMKMLKSLDI 527
           L++ +N         +   L      +  L+L          G + S+   +  L+ L +
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 528 SYNQLTGE----IPDRMAIGCFSLEILALSNNNLQ----GHIFSKKFNLTNLMRLQLDGN 579
           S N L       + + +      LE L L   +L       + S      +   L +  N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 580 KFIGEIPKSLSKC-----YLLGGLYLSDNHLSGK----IPRWLGNLSALEDIIMPNNNLE 630
                  + L +        L  L L    ++      +   + + ++L ++ + +N L 
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 631 GPIPIEFCQ-----LDYLKILDLSNNTI--------FGTLPSCFSPAYIEEIHLSKNKIE 677
                E C         L+ L +    I           L +  S   ++E+ L+ N++ 
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES---LKELSLAGNELG 297

Query: 678 GR-----LESIIHYSPYLMTLDLSYNCLHG----SIPTWIDRLPQLSYLLLANNYIEGEI 728
                   E+++     L +L +              + + +   L  L ++NN +E   
Sbjct: 298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 357

Query: 729 PIQICQ-LKEV----RLIDLSHNNLS 749
             ++CQ L +     R++ L+  ++S
Sbjct: 358 VRELCQGLGQPGSVLRVLWLADCDVS 383

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 64.2 bits (157), Expect = 9e-11
 Identities = 77/419 (18%), Positives = 140/419 (33%), Gaps = 66/419 (15%)

Query: 81  LDLGDIKNRKNRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRL----NN 136
           L+L    N         +   L TP  +++ L L    +       G   LS        
Sbjct: 61  LNLRS--NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL----TGAGCGVLSSTLRTLPT 114

Query: 137 LKFLLLDSNYFNNSIFSSLGGL-----SSLRILSLADNRL--NGSIDI-KGLDSLSNLEE 188
           L+ L L  N   ++    L          L  L L    L       +   L +  + +E
Sbjct: 115 LQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE 174

Query: 189 LDMSYNAIDNLVVP---QGLERLSTLSNLKFLRLDYNSFN----SSIFSSLGGLSSLRIL 241
           L +S N I+   V    QGL+   +   L+ L+L+           +   +   +SLR L
Sbjct: 175 LTVSNNDINEAGVRVLCQGLK--DSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 232

Query: 242 SLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGIN--------TGLDSLSNLEE 293
           +L  N+     D+   +    L  PS   L +L  W  GI           L +  +L+E
Sbjct: 233 ALGSNKLG---DVGMAELCPGLLHPSSR-LRTLWIWECGITAKGCGDLCRVLRAKESLKE 288

Query: 294 LDMTNNAINN----LVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSL----PSLKTL 345
           L +  N + +    L+         +L +L++   +    +       S+      L  L
Sbjct: 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF--TAACCSHFSSVLAQNRFLLEL 346

Query: 346 YLLFTNFKGT----IVNQELHNFTNLEELLLVK---SDLHVSQLLQSIASFTSLKYLSIR 398
            +     +      +        + L  L L     SD   S L  ++ +  SL+ L + 
Sbjct: 347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 406

Query: 399 GCVLKGALHGQDGGT-FPKFLYHQH-DLKNVDLSHLNLSGKFPNWL---VENNTNLKTL 452
              L     G  G     + +      L+ + L  +  S +  + L    ++  +L+ +
Sbjct: 407 NNCL-----GDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 63.8 bits (156), Expect = 1e-10
 Identities = 66/454 (14%), Positives = 139/454 (30%), Gaps = 88/454 (19%)

Query: 289 SNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLG--GIAMIDGSKVLQSIGSLPSLKTLY 346
            +++ LD+    +++    +    L++   + L   G+       +  ++   P+L  L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 347 LLFTNFKG----TIVNQELHNFTNLEELLLVK---SDLHVSQLLQSIASFTSLKYLSIRG 399
           L            ++         +++L L     +      L  ++ +  +L+ L +  
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 400 CVLKGALHGQDGGT--FPKFLYHQHDLKNVDLSHLNLSGKFPNWLVE---NNTNLKTLLL 454
            +L     G  G        L  Q  L+ + L + +LS      L        + K L +
Sbjct: 123 NLL-----GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177

Query: 455 ANNSLFGS-----FRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFN 509
           +NN +  +      +    S  +L  L + +      +  +    L G+    ++     
Sbjct: 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESC----GVTSDNCRDLCGI----VASK--- 226

Query: 510 GSIPSSFADMKMLKSLDISYNQLTGE----IPDRMAIGCFSLEILALSNNNLQ----GHI 561
                       L+ L +  N+L       +   +      L  L +    +     G +
Sbjct: 227 ----------ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 276

Query: 562 FSKKFNLTNLMRLQLDGNKFIGEIPKSLSK-----CYLLGGLYLSDNHLSGKIPRWLGNL 616
                   +L  L L GN+   E  + L +        L  L++     +          
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA------CC 330

Query: 617 SALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPA------YIEEIH 670
           S    ++  N  L                L +SNN +                  +  + 
Sbjct: 331 SHFSSVLAQNRFL--------------LELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376

Query: 671 LSKNKI--EG--RLESIIHYSPYLMTLDLSYNCL 700
           L+   +       L + +  +  L  LDLS NCL
Sbjct: 377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 58.8 bits (143), Expect = 5e-09
 Identities = 64/302 (21%), Positives = 113/302 (37%), Gaps = 51/302 (16%)

Query: 80  KLDLGDIKNRKNRKSERHLNASLFTPFQQLESLDLSWNNI--AGCVENEGVERLSRLNNL 137
           +L + +  N  N    R L   L     QLE+L L    +    C   +    ++   +L
Sbjct: 174 ELTVSN--NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR--DLCGIVASKASL 229

Query: 138 KFLLLDSNYFNNSIFSSLG-----GLSSLRILSLADNRL--NGSIDI-KGLDSLSNLEEL 189
           + L L SN   +   + L        S LR L + +  +   G  D+ + L +  +L+EL
Sbjct: 230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 289

Query: 190 DMSYNAIDNLVVPQGLERLS-----TLSNLKFLRLDYNSFNS----SIFSSLGGLSSLRI 240
            ++ N + +    +G   L          L+ L +   SF +       S L     L  
Sbjct: 290 SLAGNELGD----EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345

Query: 241 LSLADNRFNGSIDIKGKQA-SSILRVPSFVDLVSLSSWSVGIN--------TGLDSLSNL 291
           L +++NR    ++  G +     L  P  V L  L      ++          L +  +L
Sbjct: 346 LQISNNR----LEDAGVRELCQGLGQPGSV-LRVLWLADCDVSDSSCSSLAATLLANHSL 400

Query: 292 EELDMTNNAINNLVVP------KDYRCLRKLNTLYLGGIAMID-GSKVLQSI-GSLPSLK 343
            ELD++NN + +  +       +   C   L  L L  I   +     LQ++    PSL+
Sbjct: 401 RELDLSNNCLGDAGILQLVESVRQPGC--LLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 458

Query: 344 TL 345
            +
Sbjct: 459 VI 460

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 54.6 bits (132), Expect = 1e-07
 Identities = 60/352 (17%), Positives = 107/352 (30%), Gaps = 75/352 (21%)

Query: 446 NTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSR 505
           + ++++L +    L         S  + A L                  L     + L  
Sbjct: 2   SLDIQSLDIQCEEL---------SDARWAEL---------------LPLLQQCQVVRLDD 37

Query: 506 NAFN----GSIPSSFADMKMLKSLDISYNQLTGE----IPDRMAIGCFSLEILALSNNNL 557
                     I S+      L  L++  N+L       +   +      ++ L+L N  L
Sbjct: 38  CGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 97

Query: 558 Q----GHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSK-----CYLLGGLYLSDNHLSGK 608
                G + S    L  L  L L  N       + L +        L  L L    LS  
Sbjct: 98  TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157

Query: 609 ----IPRWLGNLSALEDIIMPNNNLEGPIPIEFCQL-----DYLKILDLSNNTI------ 653
               +   L      +++ + NN++        CQ        L+ L L +  +      
Sbjct: 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217

Query: 654 --FGTLPSCFSPAYIEEIHLSKNKIEGR-----LESIIHYSPYLMTLDLSYNCLH----G 702
              G + S  S   + E+ L  NK+           ++H S  L TL +    +     G
Sbjct: 218 DLCGIVASKAS---LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG 274

Query: 703 SIPTWIDRLPQLSYLLLANNYIEGEIPIQICQ-LKEV----RLIDLSHNNLS 749
            +   +     L  L LA N +  E    +C+ L E       + +   + +
Sbjct: 275 DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.8 bits (130), Expect = 2e-07
 Identities = 39/168 (23%), Positives = 64/168 (38%), Gaps = 29/168 (17%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLS----RLNNLKFLLLDSNYFNNSI 151
           R L  +L  P  QLESL +   +             S    +   L  L + +N   ++ 
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSF----TAACCSHFSSVLAQNRFLLELQISNNRLEDAG 357

Query: 152 FSSLG-----GLSSLRILSLADNRL--NGSIDI-KGLDSLSNLEELDMSYNAIDNLVVPQ 203
              L        S LR+L LAD  +  +    +   L +  +L ELD+S N + +     
Sbjct: 358 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD----A 413

Query: 204 GLERLSTL-----SNLKFLRLDYNSFNSSIFSSLGGL----SSLRILS 242
           G+ +L          L+ L L    ++  +   L  L     SLR++S
Sbjct: 414 GILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 73.2 bits (180), Expect = 9e-15
 Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 18/156 (11%)

Query: 68  RVECNKTTGRVIKLDLGDIKNRKNRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEG 127
           R+   + +    + +  ++        +     S        + L LS NNI      E 
Sbjct: 12  RIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLK---ACKHLALSTNNI------EK 62

Query: 128 VERLSRLNNLKFLLLDSNYFNNSIFSSLGGLS-SLRILSLADNRLNGSIDIKGLDSLSNL 186
           +  LS + NL+ L L  N        +L  ++ +L  L ++ N++     + G++ L NL
Sbjct: 63  ISSLSGMENLRILSLGRNLI--KKIENLDAVADTLEELWISYNQIA---SLSGIEKLVNL 117

Query: 187 EELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYN 222
             L MS N I N      +++L+ L  L+ L L  N
Sbjct: 118 RVLYMSNNKITNW---GEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 59.3 bits (144), Expect = 5e-10
 Identities = 41/234 (17%), Positives = 71/234 (30%), Gaps = 77/234 (32%)

Query: 126 EGVERLSRLNNLKFLLLDSNYFNNS------IFSSLGGLSSLRILSLADNRLNGSIDIKG 179
           + +       ++     +    +        + ++L  L + + L+L+ N +     I  
Sbjct: 9   DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE---KISS 65

Query: 180 LDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLR 239
           L  + NL  L +  N             +  + NL  +                   +L 
Sbjct: 66  LSGMENLRILSLGRN------------LIKKIENLDAV-----------------ADTLE 96

Query: 240 ILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNN 299
            L ++ N+                       + SLS        G++ L NL  L M+NN
Sbjct: 97  ELWISYNQ-----------------------IASLS--------GIEKLVNLRVLYMSNN 125

Query: 300 AINNLVVPKDYRCLRKLNTLYLGG--IAMIDGSKVLQS------IGSLPSLKTL 345
            I N         L KL  L L G  +          S      +  LP+LK L
Sbjct: 126 KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.5 bits (134), Expect = 8e-09
 Identities = 43/176 (24%), Positives = 63/176 (35%), Gaps = 45/176 (25%)

Query: 175 IDIKGLDSLSNLE--ELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSL 232
            + +     +  E  EL      I+ +        LSTL   K L L  N+    I SSL
Sbjct: 14  FEERKSVVATEAEKVELHGMIPPIEKM-----DATLSTLKACKHLALSTNNI-EKI-SSL 66

Query: 233 GGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSN-L 291
            G+ +LRILSL  N               I                      LD++++ L
Sbjct: 67  SGMENLRILSLGRNLI-----------KKI--------------------ENLDAVADTL 95

Query: 292 EELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYL 347
           EEL ++ N I +L        L  L  LY+     I     +  + +L  L+ L L
Sbjct: 96  EELWISYNQIASL---SGIEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLL 147

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 35/138 (25%), Positives = 54/138 (39%), Gaps = 16/138 (11%)

Query: 598 LYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIE-FCQLDYLKILDLSNNTIFGT 656
           L+     +  K+   L  L A + + +  NN+E    I     ++ L+IL L  N I   
Sbjct: 30  LHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK---ISSLSGMENLRILSLGRNLIKKI 85

Query: 657 LPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTW-----IDRL 711
                    +EE+ +S N+I   L  I      L  L +S N     I  W     +  L
Sbjct: 86  ENLDAVADTLEELWISYNQIA-SLSGIEKL-VNLRVLYMSNNK----ITNWGEIDKLAAL 139

Query: 712 PQLSYLLLANNYIEGEIP 729
            +L  LLLA N +  +  
Sbjct: 140 DKLEDLLLAGNPLYNDYK 157

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 39/170 (22%), Positives = 65/170 (38%), Gaps = 22/170 (12%)

Query: 550 LALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKI 609
           L      ++  + +    L     L L  N  I +I  SLS    L  L L  N +  KI
Sbjct: 30  LHGMIPPIE-KMDATLSTLKACKHLALSTNN-IEKI-SSLSGMENLRILSLGRNLIK-KI 85

Query: 610 PRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTI--FGTLPSCFSPAYIE 667
                    LE++ +  N +     IE  +L  L++L +SNN I  +G +    +   +E
Sbjct: 86  ENLDAVADTLEELWISYNQIASLSGIE--KLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143

Query: 668 EIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYL 717
           ++ L+ N +    +     S Y + +              + RLP L  L
Sbjct: 144 DLLLAGNPLYNDYKENNATSEYRIEV--------------VKRLPNLKKL 179

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 56/223 (25%), Positives = 91/223 (40%), Gaps = 26/223 (11%)

Query: 512 IPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQ---GHIFSKKFNL 568
           +P S       K+LD+S+N L   +          L++L LS   +Q      +    +L
Sbjct: 26  LPFS------TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ---SL 75

Query: 569 TNLMRLQLDGNKFIGEIPKSL-SKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNN 627
           ++L  L L GN  I  +     S    L  L   + +L+      +G+L  L+++ + +N
Sbjct: 76  SHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 628 NL-EGPIPIEFCQLDYLKILDLSNNTIFGTLPS-CFS-----PAYIEEIHLSKNKIEGRL 680
            +    +P  F  L  L+ LDLS+N I  ++           P     + LS N +   +
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FI 192

Query: 681 ESIIHYSPYLMTLDLSYNCLHGSIPTWI-DRLPQLSYLLLANN 722
           +        L  L L  N L  S+P  I DRL  L  + L  N
Sbjct: 193 QPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 48/207 (23%), Positives = 83/207 (40%), Gaps = 14/207 (6%)

Query: 501 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQ-- 558
           L+LS N        SF     L+ LD+S  ++   I D        L  L L+ N +Q  
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 559 -GHIFSKKFNLTNLMRLQLDGNKFIGEIPKSL-SKCYLLGGLYLSDNHL-SGKIPRWLGN 615
               FS    L++L +L       +  +          L  L ++ N + S K+P +  N
Sbjct: 92  ALGAFS---GLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 616 LSALEDIIMPNNNLEGPIPIEFCQLDYLKI----LDLSNNTIFGTLPSCFSPAYIEEIHL 671
           L+ LE + + +N ++     +   L  + +    LDLS N +    P  F    ++E+ L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 207

Query: 672 SKNKIEGRLESIIHYSPYLMTLDLSYN 698
             N+++   + I      L  + L  N
Sbjct: 208 DTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 66.9 bits (164), Expect = 4e-12
 Identities = 58/236 (24%), Positives = 93/236 (39%), Gaps = 51/236 (21%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSN---YFNNSIF 152
           RHL +  F  F +L+ LDLS   I      +G      L++L  L+L  N         F
Sbjct: 41  RHLGSYSFFSFPELQVLDLSRCEIQ--TIEDGA--YQSLSHLSTLILTGNPIQSLALGAF 96

Query: 153 SSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLS 212
           S   GLSSL+ L   +  L  S++   +  L  L+EL++++N I +  +P   E  S L+
Sbjct: 97  S---GLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLT 149

Query: 213 NLKFLRLDYN---SFNSSIFSSLGGLSSLRI-LSLADNRFNGSIDIKGKQASSILRVPSF 268
           NL+ L L  N   S   +    L  +  L + L L+ N                      
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP--------------------- 188

Query: 269 VDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKD-YRCLRKLNTLYLGG 323
                ++    G    +     L+EL +  N + +  VP   +  L  L  ++L  
Sbjct: 189 -----MNFIQPGAFKEI----RLKELALDTNQLKS--VPDGIFDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 56/245 (22%), Positives = 87/245 (35%), Gaps = 52/245 (21%)

Query: 159 SSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLR 218
            S + L L+ N L   +      S   L+ LD+S   I  +    G     +LS+L  L 
Sbjct: 28  FSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTI--EDGA--YQSLSHLSTLI 82

Query: 219 LDYN---SFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLS 275
           L  N   S     FS   GLSSL+ L   +                +  + +F       
Sbjct: 83  LTGNPIQSLALGAFS---GLSSLQKLVAVETN--------------LASLENFP------ 119

Query: 276 SWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG--IAMIDGSKVL 333
                    +  L  L+EL++ +N I +  +P+ +  L  L  L L    I  I     L
Sbjct: 120 ---------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDL 169

Query: 334 QSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIAS--FTS 391
           + +  +P L     L  N    I   +   F  +    L +  L  +Q L+S+    F  
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFI---QPGAFKEIR---LKELALDTNQ-LKSVPDGIFDR 222

Query: 392 LKYLS 396
           L  L 
Sbjct: 223 LTSLQ 227

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 15/167 (8%)

Query: 598 LYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIE-FCQLDYLKILDLSNNTIFGT 656
           L LS N L         +   L+ + +    ++  I    +  L +L  L L+ N I  +
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPI-QS 90

Query: 657 LPS-CFS-PAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTW--IDRLP 712
           L    FS  + ++++   +  +       I +   L  L++++N +  S         L 
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLT 149

Query: 713 QLSYLLLANNYIEGEIPIQI----CQLKEVRL-IDLSHNNLSGHIPP 754
            L +L L++N I+  I         Q+  + L +DLS N ++  I P
Sbjct: 150 NLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQP 194

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 55/281 (19%), Positives = 98/281 (34%), Gaps = 88/281 (31%)

Query: 289 SNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSI-----GSLPSLK 343
            + + LD++ N + +L     +    +L  L L           +Q+I      SL  L 
Sbjct: 28  FSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLS-------RCEIQTIEDGAYQSLSHLS 79

Query: 344 TLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASF-----TSLKYLSIR 398
           TL L   N   ++        ++L++L+ V+++L       S+ +F      +LK L   
Sbjct: 80  TLIL-TGNPIQSLALGAFSGLSSLQKLVAVETNL------ASLENFPIGHLKTLKEL--- 129

Query: 399 GCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNS 458
                                   ++ +  +    L   F      N TNL+ L L++N 
Sbjct: 130 ------------------------NVAHNLIQSFKLPEYF-----SNLTNLEHLDLSSNK 160

Query: 459 LFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGL----MDLNLSRNAFNGSIPS 514
           +                           I       L  +    + L+LS N  N   P 
Sbjct: 161 I-------------------------QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195

Query: 515 SFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNN 555
           +F +++ LK L +  NQL   +PD +     SL+ + L  N
Sbjct: 196 AFKEIR-LKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 823 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLL 877
           DLS N L             ++ L+LS   +  TI    + +L  + +L L+ N +
Sbjct: 34  DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI 88

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 73.3 bits (180), Expect = 8e-14
 Identities = 40/247 (16%), Positives = 75/247 (30%), Gaps = 21/247 (8%)

Query: 486 HIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCF 545
            IP ++       ++L             +F+    L+ ++IS N +   I   +     
Sbjct: 23  EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 79

Query: 546 SLEILALSNNN----LQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYL--LGGLY 599
            L  + +   N    +    F    NL NL  L +     I  +P  + K +      L 
Sbjct: 80  KLHEIRIEKANNLLYINPEAFQ---NLPNLQYLLISNTG-IKHLP-DVHKIHSLQKVLLD 134

Query: 600 LSDNHLSGKIP-RWLGNLSA-LEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTL 657
           + DN     I       LS     + +  N ++      F      ++    NN +    
Sbjct: 135 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELP 194

Query: 658 PSCFSPA-YIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSY 716
              F  A     + +S+ +I       +     L             +PT +++L  L  
Sbjct: 195 NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL---KKLPT-LEKLVALME 250

Query: 717 LLLANNY 723
             L    
Sbjct: 251 ASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.3 bits (167), Expect = 3e-12
 Identities = 47/247 (19%), Positives = 78/247 (31%), Gaps = 33/247 (13%)

Query: 109 LESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSI----FSSLGGLSSLRIL 164
              L      +    +       S   +L+ + +  N     I    FS+L  L  +RI 
Sbjct: 32  AIELRFVLTKLRVIQKGA----FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 165 SLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSF 224
               N L   I+ +   +L NL+ L +S   I +L  P              L +  N  
Sbjct: 88  K--ANNLL-YINPEAFQNLPNLQYLLISNTGIKHL--PDVH--KIHSLQKVLLDIQDNIN 140

Query: 225 NSSI----FSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVG 280
             +I    F  L       IL L  N     I       + +  + +  D  +L      
Sbjct: 141 IHTIERNSFVGLSFE--SVILWLNKNGIQ-EIHNSAFNGTQLDEL-NLSDNNNLEELPND 196

Query: 281 INTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLP 340
           +       S    LD++   I++L        L+KL       +      K L ++  L 
Sbjct: 197 V---FHGASGPVILDISRTRIHSL-PSYGLENLKKLRARSTYNL------KKLPTLEKLV 246

Query: 341 SLKTLYL 347
           +L    L
Sbjct: 247 ALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 39/237 (16%), Positives = 79/237 (33%), Gaps = 34/237 (14%)

Query: 523 KSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNKF 581
           +      +++T EIP  +     +   L      L+  I    F    +L ++++  N  
Sbjct: 12  RVFLCQESKVT-EIPSDLPR---NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDV 66

Query: 582 IGEIPKS-LSKCYLLGGLYLSD-NHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQ 639
           +  I     S    L  + +   N+L    P    NL  L+ +++ N  ++    +    
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 126

Query: 640 LDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNC 699
                +LD+ +N    T+                        S +  S   + L L+ N 
Sbjct: 127 SLQKVLLDIQDNINIHTIER---------------------NSFVGLSFESVILWLNKNG 165

Query: 700 LHGSIPTWI-DRLPQLSYLLLANNYIEGEIPIQICQ-LKEVRLIDLSHNNLSGHIPP 754
           +   I     +        L  NN +E E+P  +        ++D+S   +   +P 
Sbjct: 166 IQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPS 219

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 57/296 (19%), Positives = 88/296 (29%), Gaps = 49/296 (16%)

Query: 422 HDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLAN-NSLFGSFRMPIHSHQKLATLDVST 480
            DL+ +++S  ++       +  N   L  + +   N+L                     
Sbjct: 54  GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-------------------- 93

Query: 481 NFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPS-SFADMKMLKSLDISYNQLTGEIPDR 539
                +I  E    L  L  L +S       +P            LDI  N     I   
Sbjct: 94  -----YINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERN 147

Query: 540 MAIGC-FSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPK-SLSKCYLLGG 597
             +G  F   IL L+ N +Q  I +  FN T L  L L  N  + E+P            
Sbjct: 148 SFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 206

Query: 598 LYLSDNHLSGKIPRW-LGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNN----- 651
           L +S   +   +P + L NL  L        NL+    +E  +L  L    L+       
Sbjct: 207 LDISRTRIH-SLPSYGLENLKKLR--ARSTYNLKKLPTLE--KLVALMEASLTYPSHCCA 261

Query: 652 ------TIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSP-YLMTLDLSYNCL 700
                  I    P C      +E+         R          Y    D++Y   
Sbjct: 262 FANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAEDNESSYSRGFDMTYTEF 317

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.1 bits (130), Expect = 1e-07
 Identities = 39/251 (15%), Positives = 74/251 (29%), Gaps = 33/251 (13%)

Query: 289 SNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGS-----LPSLK 343
            N  EL      +  +     +     L  + +        + VL+ I +     LP L 
Sbjct: 30  RNAIELRFVLTKLRVI-QKGAFSGFGDLEKIEI------SQNDVLEVIEADVFSNLPKLH 82

Query: 344 TLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLK 403
            + +   N    I  +   N  NL+ LL+  + +     +  I S      L I+     
Sbjct: 83  EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS-LQKVLLDIQD---N 138

Query: 404 GALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSL---- 459
             +H  +  +F        +   + L+   +  +  N         +  L  NN+L    
Sbjct: 139 INIHTIERNSFVG---LSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELP 194

Query: 460 FGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADM 519
              F            LD+S       +P      L  L   +         +P +   +
Sbjct: 195 NDVFHGASG----PVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLP-TLEKL 245

Query: 520 KMLKSLDISYN 530
             L    ++Y 
Sbjct: 246 VALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 29/144 (20%), Positives = 42/144 (29%), Gaps = 19/144 (13%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSL 155
           +HL         Q   LD+  N     +E      LS       L L+ N       S+ 
Sbjct: 117 KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS--FESVILWLNKNGIQEIHNSAF 174

Query: 156 GGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNL--VVPQGLERLSTLSN 213
            G     +    +N L   +        S    LD+S   I +L     + L++L   S 
Sbjct: 175 NGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 233

Query: 214 --------------LKFLRLDYNS 223
                         L    L Y S
Sbjct: 234 YNLKKLPTLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 38/238 (15%), Positives = 79/238 (33%), Gaps = 39/238 (16%)

Query: 644 KILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGS 703
           ++     + +   +PS   P    E+     K+    +        L  +++S N +   
Sbjct: 12  RVFLCQESKV-TEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 704 IPTWI-DRLPQLSYLLLAN-NYIEGEIPIQICQ-LKEVRLIDLSHNNLSGHIPPCLVNTA 760
           I   +   LP+L  + +   N +   I  +  Q L  ++ + +S+  +  H+P      +
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHS 127

Query: 761 LNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMS 820
           L +   +         D+ + + +   +  G                             
Sbjct: 128 LQKVLLDI-------QDNINIHTIERNSFVGLSFESVI---------------------- 158

Query: 821 GIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLL 877
            + L+ N +  EI       T++  LNLS NN    +P   F        LD+S   +
Sbjct: 159 -LWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 10/92 (10%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
                +K+T EIP+ +        L      L       FS    +E +++S N +L  I
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 882 PPQ----LIVLNTLAVFRVANNNLSGKIPDRV 909
                  L  L+ + + +   NNL   I    
Sbjct: 71  EADVFSNLPKLHEIRIEK--ANNLL-YINPEA 99

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.8 bits (176), Expect = 2e-13
 Identities = 36/154 (23%), Positives = 62/154 (40%), Gaps = 18/154 (11%)

Query: 103 FTPFQQLESLDLSWNNIAGCVENEGVER--LSRLNNLKFLLLDSN---YFNNSIFSSLGG 157
            T    L SL LS N++        +       + NL++L L SN     +  +FS    
Sbjct: 60  PTRLTNLHSLLLSHNHL------NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS---D 110

Query: 158 LSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFL 217
           L +L +L L +N +   +D    + ++ L++L +S N I      + ++  + L  L  L
Sbjct: 111 LQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLL 168

Query: 218 RLDYNSFNSSIFSSLGGLSSL--RILSLADNRFN 249
            L  N       + L  L +     L L +N   
Sbjct: 169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 55/210 (26%), Positives = 83/210 (39%), Gaps = 23/210 (10%)

Query: 475 TLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPS-SFADMKMLKSLDISYNQLT 533
            LD+S N           T L+ L  L LS N  N  I S +F  +  L+ LD+S N L 
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101

Query: 534 GEIPDRMAIGCFSLEILALSNNNLQ---GHIFSKKFNLTNLMRLQLDGNKFIGEIP---- 586
             + + +     +LE+L L NN++     + F    ++  L +L L  N+ I   P    
Sbjct: 102 -TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE---DMAQLQKLYLSQNQ-ISRFPVELI 156

Query: 587 KSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMP-NNNLEGPIPIEFCQL----D 641
           K  +K   L  L LS N L       L  L A     +  +NN   P+  + C+L     
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN---PLECD-CKLYQLFS 212

Query: 642 YLKILDLSNNTIFGTLPSCFSPAYIEEIHL 671
           + +   LS+   F     C     +  I  
Sbjct: 213 HWQYRQLSSVMDFQEDLYCMHSKKLHNIFS 242

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 42/186 (22%), Positives = 71/186 (38%), Gaps = 45/186 (24%)

Query: 148 NNSIFS-----SLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVP 202
           +N++       +   L++L  L L+ N LN  I  +    + NL  LD+S N +  L   
Sbjct: 48  HNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTL--D 104

Query: 203 QGLERLSTLSNLKFLRLDYN---SFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQA 259
           + L   S L  L+ L L  N     + + F     ++ L+ L L+ N+            
Sbjct: 105 EFL--FSDLQALEVLLLYNNHIVVVDRNAFE---DMAQLQKLYLSQNQ------------ 147

Query: 260 SSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKL--N 317
                         +S + V +    + L  L  LD+++N +  L    D + L     N
Sbjct: 148 --------------ISRFPVELIKDGNKLPKLMLLDLSSNKLKKL-PLTDLQKLPAWVKN 192

Query: 318 TLYLGG 323
            LYL  
Sbjct: 193 GLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.0 bits (161), Expect = 2e-11
 Identities = 47/191 (24%), Positives = 73/191 (38%), Gaps = 37/191 (19%)

Query: 423 DLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNF 482
               +DLSH NLS     W     TNL +LLL++N               L  +      
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN--------------HLNFISSEA-- 83

Query: 483 FRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPS-SFADMKMLKSLDISYNQLTGEIPDRMA 541
           F           +  L  L+LS N  + ++    F+D++ L+ L +  N +   +     
Sbjct: 84  FVP---------VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAF 132

Query: 542 IGCFSLEILALSNNNLQ---GHIFSKKFNLTNLMRLQLDGNKFIGEIPK----SLSKCYL 594
                L+ L LS N +      +      L  LM L L  NK + ++P      L   ++
Sbjct: 133 EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPA-WV 190

Query: 595 LGGLYLSDNHL 605
             GLYL +N L
Sbjct: 191 KNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.1 bits (143), Expect = 3e-09
 Identities = 56/206 (27%), Positives = 78/206 (37%), Gaps = 33/206 (16%)

Query: 523 KSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKF--NLTNLMRLQLDGNK 580
             L  S  QL   +P  +        +L LS+NNL   + ++     LTNL  L L  N 
Sbjct: 21  NILSCSKQQLP-NVPQSLPS---YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNH 75

Query: 581 FIGEIPK-SLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIE-FC 638
            +  I   +      L  L LS NHL         +L ALE +++ NN++   +    F 
Sbjct: 76  -LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFE 133

Query: 639 QLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYN 698
            +  L+ L LS N              I    +   K   +L         LM LDLS N
Sbjct: 134 DMAQLQKLYLSQN-------------QISRFPVELIKDGNKLPK-------LMLLDLSSN 173

Query: 699 CLHGSIPTWIDRLPQLS--YLLLANN 722
            L     T + +LP      L L NN
Sbjct: 174 KLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 22/164 (13%)

Query: 598 LYLSDNHLSGKIPRW-LGNLSALEDIIMPNNNLEGPIPIE-FCQLDYLKILDLSNNTI-- 653
           L LS N+LS     W    L+ L  +++ +N+L   I  E F  +  L+ LDLS+N +  
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNHLHT 102

Query: 654 -----FGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIP--- 705
                F  L +      +E + L  N I     +       L  L LS N +    P   
Sbjct: 103 LDEFLFSDLQA------LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVEL 155

Query: 706 -TWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLS-HNN 747
               ++LP+L  L L++N ++      + +L       L  HNN
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.9 bits (127), Expect = 3e-07
 Identities = 40/202 (19%), Positives = 71/202 (35%), Gaps = 42/202 (20%)

Query: 178 KGLDSL-----SNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSL 232
           + L ++     S    LD+S+N +  L   +     + L+NL  L L +N  N     + 
Sbjct: 28  QQLPNVPQSLPSYTALLDLSHNNLSRL---RAEWTPTRLTNLHSLLLSHNHLNFISSEAF 84

Query: 233 GGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLE 292
             + +LR L L+ N               +  +  F+                  L  LE
Sbjct: 85  VPVPNLRYLDLSSNH--------------LHTLDEFL---------------FSDLQALE 115

Query: 293 ELDMTNNAINNLVVPKDYRCLRKLNTLYLGG--IAMIDGSKVLQSIGSLPSLKTLYLLFT 350
            L + NN I  +     +  + +L  LYL    I+     ++++    LP L  L  L +
Sbjct: 116 VLLLYNNHIVVV-DRNAFEDMAQLQKLYLSQNQISRFP-VELIKDGNKLPKLMLLD-LSS 172

Query: 351 NFKGTIVNQELHNFTNLEELLL 372
           N    +   +L       +  L
Sbjct: 173 NKLKKLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.2 bits (125), Expect = 5e-07
 Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 9/112 (8%)

Query: 823 DLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
           DLS N L   +   +   L  +  L L +N++       F ++ Q++ L LS N  + + 
Sbjct: 94  DLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRF 151

Query: 882 PPQLIV----LNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYE--GNPFLC 927
           P +LI     L  L +  +++N L       + +   + ++      NP  C
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.3 bits (115), Expect = 8e-06
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 19/122 (15%)

Query: 643 LKILDLSNNTIFGTLPSCFSPAYI---EEIHLSKNKIEGRLESIIHYS-----PYLMTLD 694
             +LDLS+N +   L + ++P  +     + LS N +     + I        P L  LD
Sbjct: 41  TALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHL-----NFISSEAFVPVPNLRYLD 94

Query: 695 LSYNCLHGSIPTWI-DRLPQLSYLLLANNYIEGEIPIQI-CQLKEVRLIDLSHNNLSGHI 752
           LS N LH ++  ++   L  L  LLL NN+I   +       + +++ + LS N +S   
Sbjct: 95  LSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RF 151

Query: 753 PP 754
           P 
Sbjct: 152 PV 153

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.8 bits (106), Expect = 9e-05
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 822 IDLSCNKLTGEIPTQI--GYLTRIRALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLLL 878
           +DLS N L+  +  +     LT + +L LSHN+L   I +  F  +  +  LDLS N  L
Sbjct: 44  LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN-HL 100

Query: 879 GKIPPQLIV-LNTLAVFRVANNNLSGKIPDRV 909
             +   L   L  L V  + NN++   +    
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIV-VVDRNA 131

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.5 bits (173), Expect = 3e-13
 Identities = 45/185 (24%), Positives = 73/185 (39%), Gaps = 14/185 (7%)

Query: 447 TNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRN 506
            +   L L+ N L+      +  + +L  L++        + V+    L  L  L+LS N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGT--LPVLGTLDLSHN 87

Query: 507 AFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQ---GHIFS 563
               S+P     +  L  LD+S+N+LT  +P     G   L+ L L  N L+     + +
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 564 KKFNLTNLMRLQLDGNKFIGEIPKSL-SKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDI 622
                  L +L L  N  + E+P  L +    L  L L +N L   IP+       L   
Sbjct: 146 P---TPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFA 200

Query: 623 IMPNN 627
            +  N
Sbjct: 201 FLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 69.0 bits (169), Expect = 9e-13
 Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 12/152 (7%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSL 155
              + +   P+ +L  L+L    +        ++    L  L  L L  N    S+    
Sbjct: 44  YTFSLATLMPYTRLTQLNLDRAEL------TKLQVDGTLPVLGTLDLSHNQL-QSLPLLG 96

Query: 156 GGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLK 215
             L +L +L ++ NRL  S+ +  L  L  L+EL +  N +  L  P GL  L+    L+
Sbjct: 97  QTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTL--PPGL--LTPTPKLE 151

Query: 216 FLRLDYNSFNSSIFSSLGGLSSLRILSLADNR 247
            L L  N+        L GL +L  L L +N 
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.5 bits (147), Expect = 6e-10
 Identities = 43/199 (21%), Positives = 69/199 (34%), Gaps = 37/199 (18%)

Query: 136 NLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNA 195
           +   L L  N       ++L   + L  L+L    L     ++   +L  L  LD+S+N 
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVLGTLDLSHNQ 88

Query: 196 IDNL-VVPQGLERLSTLSNLKFLRLDYNSFNS---SIFSSLGGLSSLRILSLADNRFNGS 251
           + +L ++ Q       L  L  L + +N   S          GL  L+ L L  N     
Sbjct: 89  LQSLPLLGQT------LPALTVLDVSFNRLTSLPLGALR---GLGELQELYLKGNEL--- 136

Query: 252 IDIKGKQASSILRVPSFVDLVSLSSWSVGIN--TGL-----DSLSNLEELDMTNNAINNL 304
                      L          L   S+  N  T L     + L NL+ L +  N++   
Sbjct: 137 ---------KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT- 186

Query: 305 VVPKDYRCLRKLNTLYLGG 323
            +PK +     L   +L G
Sbjct: 187 -IPKGFFGSHLLPFAFLHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 11/161 (6%)

Query: 598 LYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTL 657
           L+LS+N L       L   + L  + +    L   + +    L  L  LDLS+N +  +L
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-DGTLPVLGTLDLSHNQL-QSL 92

Query: 658 PSCFS--PAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWI-DRLPQL 714
           P      PA +  + +S N++       +     L  L L  N L  ++P  +    P+L
Sbjct: 93  PLLGQTLPA-LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKL 150

Query: 715 SYLLLANNYIEGEIPIQICQ-LKEVRLIDLSHNNLSGHIPP 754
             L LANN +  E+P  +   L+ +  + L  N+L   IP 
Sbjct: 151 EKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPK 189

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 39/215 (18%), Positives = 72/215 (33%), Gaps = 47/215 (21%)

Query: 183 LSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILS 242
           +++  E++     +    +P  L       +   L L  N   +   ++L   + L  L+
Sbjct: 9   VASHLEVNCDKRNLTA--LPPDL-----PKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 243 LADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGIN------TGLDSLSNLEELDM 296
           L                  + ++     L  L +  +  N          +L  L  LD+
Sbjct: 62  LDRAE--------------LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107

Query: 297 TNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSI-----GSLPSLKTLYLLFTN 351
           + N + +L      R L +L  LYL G         L+++        P L+ L  L  N
Sbjct: 108 SFNRLTSL-PLGALRGLGELQELYLKG-------NELKTLPPGLLTPTPKLEKLS-LANN 158

Query: 352 FKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSI 386
               +    L+   NL+ L      L  +  L +I
Sbjct: 159 NLTELPAGLLNGLENLDTL-----LLQENS-LYTI 187

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 816 LMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 875
           L  +  +DLS N+L   +P     L  +  L++S N LT         L +++ L L  N
Sbjct: 76  LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134

Query: 876 LL 877
            L
Sbjct: 135 EL 136

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 4/92 (4%)

Query: 663 PAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANN 722
           P     +HLS+N +     + +     L  L+L    L   +      LP L  L L++N
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD-GTLPVLGTLDLSHN 87

Query: 723 YIEGEIPIQICQLKEVRLIDLSHNNLSGHIPP 754
            ++  +P+    L  + ++D+S N L+  +P 
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPL 117

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 72.6 bits (178), Expect = 3e-13
 Identities = 70/479 (14%), Positives = 159/479 (33%), Gaps = 56/479 (11%)

Query: 100 ASLFTPFQQLESLDLSWNNIAGCVENEGVERLSR-LNNLKFLLLD--SNYFNNSIFSSLG 156
            ++ + +  LE + L        V ++ +E +++   N K L+L     +  + + +   
Sbjct: 98  EAMSSSYTWLEEIRLK----RMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAA 153

Query: 157 GLSSLRILSLADNRLNGSIDIKGLDSLS----NLEELDMSYNAIDNLVVPQGLERLST-L 211
              +L+ L L ++ ++  +    L        +L  L++S   + + V    LERL T  
Sbjct: 154 TCRNLKELDLRESDVD-DVSGHWLSHFPDTYTSLVSLNISC--LASEVSFSALERLVTRC 210

Query: 212 SNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDL 271
            NLK L+L+       + + L     L  L           D+    + ++        L
Sbjct: 211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270

Query: 272 VSLSS-WSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGS 330
                     +       S L  L+++   + +  + K      KL  L++       G 
Sbjct: 271 SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGL 330

Query: 331 KVLQSIGSLPSLKTLYLLFTNFKGTIVNQEL---------HNFTNLEELLLVKSDLHVSQ 381
           +VL S  +   L+ L +  +       N  L              LE +L     +  + 
Sbjct: 331 EVLAS--TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA 388

Query: 382 LLQSIASFTSLKYLSIRGCVLKGALHGQDGGT---FPKFLYHQHDLKNVDLSHLNLSGKF 438
           L+    +  ++    +     K   +         F   + H  DL+ + LS L L+ K 
Sbjct: 389 LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKV 447

Query: 439 PNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGL 498
             ++      ++ L +A             +      +              + +    L
Sbjct: 448 FEYIGTYAKKMEMLSVA------------FAGDSDLGM------------HHVLSGCDSL 483

Query: 499 MDLNLSRNAF-NGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNN 556
             L +    F + ++ ++ + ++ ++SL +S   ++      +      L +  +    
Sbjct: 484 RKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 54.9 bits (132), Expect = 1e-07
 Identities = 43/255 (16%), Positives = 86/255 (33%), Gaps = 12/255 (4%)

Query: 338 SLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIAS-FTSLKYLS 396
           S   L+ + L         +     +F N + L+L   +   +  L +IA+   +LK L 
Sbjct: 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELD 162

Query: 397 IRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLS--HLNLSGKFPNWLVENNTNLKTLLL 454
           +R       +    G     F      L ++++S     +S      LV    NLK+L L
Sbjct: 163 LRES----DVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218

Query: 455 ANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIG-----TYLSGLMDLNLSRNAFN 509
                       +    +L  L            V  G     +    L  L+   +A  
Sbjct: 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP 278

Query: 510 GSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLT 569
             +P+ ++    L +L++SY  +      ++   C  L+ L + +      +        
Sbjct: 279 AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCK 338

Query: 570 NLMRLQLDGNKFIGE 584
           +L  L++  ++    
Sbjct: 339 DLRELRVFPSEPFVM 353

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.2 bits (171), Expect = 2e-12
 Identities = 45/304 (14%), Positives = 93/304 (30%), Gaps = 44/304 (14%)

Query: 46  QRLQNWVDAADDENYSDCCQWERVECNKTTGRVIKLDLGDIKNRKNRKSERHLNASLFTP 105
             L           ++    W   +  K    +        ++    +       S+   
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKS 361

Query: 106 FQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNN-SIFSSLGGLSSLRIL 164
              L+S   S   +           L+ +  ++ L            FS+L  +  +R  
Sbjct: 362 -TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 420

Query: 165 SLADNR-LNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNS 223
            L D R      +       +++  L +++  +  L        L  L  +  L L +N 
Sbjct: 421 YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL------CHLEQLLLVTHLDLSHNR 474

Query: 224 FNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINT 283
              ++  +L  L  L +L  +DN                        L ++         
Sbjct: 475 L-RALPPALAALRCLEVLQASDNA-----------------------LENVD-------- 502

Query: 284 GLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG--IAMIDGSKVLQSIGSLPS 341
           G+ +L  L+EL + NN +      +      +L  L L G  +   +G +  +    LPS
Sbjct: 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ-ERLAEMLPS 561

Query: 342 LKTL 345
           + ++
Sbjct: 562 VSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.5 bits (146), Expect = 2e-09
 Identities = 43/261 (16%), Positives = 87/261 (33%), Gaps = 23/261 (8%)

Query: 414 FPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMP--IHSHQ 471
            P+  +      +       L    P     ++   + L     S+  S  +   + S +
Sbjct: 313 LPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCK 372

Query: 472 KLATLDVSTNFFRGHIPVEIGTY--LSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISY 529
           +L  L+    +    I + +     L    +     +      P   A +  L+S  +  
Sbjct: 373 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE 432

Query: 530 NQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSL 589
           N +       +        +L L++ +L   +      L  +  L L  N+ +  +P +L
Sbjct: 433 NSVLKMEYADV-------RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNR-LRALPPAL 482

Query: 590 SKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEG-PIPIEFCQLDYLKILDL 648
           +    L  L  SDN L   +   + NL  L+++++ NN L+             L +L+L
Sbjct: 483 AALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540

Query: 649 SNNTIFGTLPSCFSPAYIEEI 669
             N        C      E +
Sbjct: 541 QGN------SLCQEEGIQERL 555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.3 bits (122), Expect = 1e-06
 Identities = 45/322 (13%), Positives = 92/322 (28%), Gaps = 16/322 (4%)

Query: 592 CYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNN 651
            Y    L  ++ H            + L         +   +      +D   +      
Sbjct: 230 FYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRT 289

Query: 652 TIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRL 711
                 PS      +    L+    +     I   S       L  +             
Sbjct: 290 PDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD-SATD 348

Query: 712 PQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAP 771
            QL    L+       +  ++   KE++ ++  +      I   +          E +  
Sbjct: 349 EQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY 407

Query: 772 IS----------SSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSG 821
            S          +  DD  +  L   +       +   +    K+++       L+ ++ 
Sbjct: 408 FSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTH 467

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLG-K 880
           +DLS N+L   +P  +  L  +  L  S N L   +    +NL +++ L L  N L    
Sbjct: 468 LDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSA 524

Query: 881 IPPQLIVLNTLAVFRVANNNLS 902
               L+    L +  +  N+L 
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSLC 546

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 33/188 (17%), Positives = 71/188 (37%), Gaps = 10/188 (5%)

Query: 473 LATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPS-SFADMKMLKSLDISYNQ 531
             TL +     R  IP    + L  +  + +S +     + S SF ++  +  ++I   +
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 532 LTGEIPDRMAIGCFSLEILALSNNNLQGHI--FSKKFNLTNLMRLQLDGNKFIGEIPKSL 589
               I          L+ L + N  L+      +K ++      L++  N ++  IP + 
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 590 --SKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIE-FCQL-DYLKI 645
               C     L L +N  +  +  +  N + L+ + +  N     I  + F  +     +
Sbjct: 151 FQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 646 LDLSNNTI 653
           LD+S  ++
Sbjct: 210 LDVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 62.7 bits (153), Expect = 6e-11
 Identities = 40/239 (16%), Positives = 83/239 (34%), Gaps = 35/239 (14%)

Query: 522 LKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNK 580
            +   ++   +   IP        S + L L   +L+  I S  F NL N+ R+ +  + 
Sbjct: 13  EEDFRVTCKDIQ-RIPSLPP----STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDV 66

Query: 581 FIGEIP-KSLSKCYLLGGLYLSDN-HLSGKIPRWLGNLSALEDIIMPNNNLEG-PIPIEF 637
            + ++   S      +  + + +  +L+   P  L  L  L+ + + N  L+  P   + 
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKV 126

Query: 638 CQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSY 697
              D   IL++++N    ++P                       +        +TL L  
Sbjct: 127 YSTDIFFILEITDNPYMTSIPV---------------------NAFQGLCNETLTLKLYN 165

Query: 698 NCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQ--LKEVRLIDLSHNNLSGHIPP 754
           N    S+  +     +L  + L  N     I             L+D+S  +++  +P 
Sbjct: 166 NGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPS 222

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 38/228 (16%), Positives = 72/228 (31%), Gaps = 42/228 (18%)

Query: 109 LESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFS-SLGGLSSLRILSLA 167
            ++L L   ++     +      S L N+  + +  +     + S S   LS +  + + 
Sbjct: 33  TQTLKLIETHLRTIPSHA----FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 168 DNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSS 227
           + R    ID   L  L  L+ L +    +        L ++ +      L +  N + +S
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLKMF---PDLTKVYSTDIFFILEITDNPYMTS 145

Query: 228 I----FSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFV-DLVSLSSWSVGIN 282
           I    F  L        L L +N F                V  +  +   L +  +  N
Sbjct: 146 IPVNAFQGLCNE--TLTLKLYNNGFT--------------SVQGYAFNGTKLDAVYLNKN 189

Query: 283 TGLDSL---------SNLEELDMTNNAINNLVVPKDYRCLRKLNTLYL 321
             L  +         S    LD++  ++  L      + L  L  L  
Sbjct: 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL----PSKGLEHLKELIA 233

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 26/158 (16%), Positives = 53/158 (33%), Gaps = 16/158 (10%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNN-SIFSS 154
           + L +  F    ++  +++        ++ +    L  L  LKFL + +         + 
Sbjct: 69  QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA---LKELPLLKFLGIFNTGLKMFPDLTK 125

Query: 155 LGGLSSLRILSLADNRLNGSIDIKGLDSLSN-LEELDMSYNAIDNLVVPQGLERLSTLSN 213
           +       IL + DN    SI +     L N    L +  N   +  V          + 
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS--VQGYAFN---GTK 180

Query: 214 LKFLRLDYNSFNSSI----FSSLGGLSSLRILSLADNR 247
           L  + L+ N + + I    F  +   S   +L ++   
Sbjct: 181 LDAVYLNKNKYLTVIDKDAFGGVY--SGPSLLDVSQTS 216

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 36/233 (15%), Positives = 71/233 (30%), Gaps = 45/233 (19%)

Query: 183 LSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFS-SLGGLSSLRIL 241
             + + L +    +  +  P      S L N+  + +  +     + S S   LS +  +
Sbjct: 30  PPSTQTLKLIETHLRTI--PSHA--FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHI 85

Query: 242 SLADNRFNGSIDIKGKQASSILRVPS--FVDLVSLSSWSVGIN--------TGLDSLSNL 291
            + + R             ++  +      +L  L    +           T + S    
Sbjct: 86  EIRNTR-------------NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIF 132

Query: 292 EELDMTNNAINNLVVPKDYRCLRK-LNTLYLGG--IAMIDGSKVLQSIGSLPSLKTLYLL 348
             L++T+N     +    ++ L     TL L       +          +   L  +YL 
Sbjct: 133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ-----GYAFNGTKLDAVYLN 187

Query: 349 FTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQ-LLQSIAS--FTSLKYLSIR 398
              +   I   +   F  +       S L VSQ  + ++ S     LK L  R
Sbjct: 188 KNKYLTVI---DKDAFGGVYSGP---SLLDVSQTSVTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 5/89 (5%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
             ++C  +   IP+        + L L   +L       FSNL  I  + +S ++ L ++
Sbjct: 16  FRVTCKDIQ-RIPSL---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL 71

Query: 882 PPQLIV-LNTLAVFRVANNNLSGKIPDRV 909
                  L+ +    + N      I    
Sbjct: 72  ESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 65.7 bits (160), Expect = 5e-11
 Identities = 68/524 (12%), Positives = 140/524 (26%), Gaps = 71/524 (13%)

Query: 98  LNASLFTPFQQLESLDLSW----------NNIAGCVENEGVERLSR-LNNLKFLLLDSNY 146
               L   F  L SL L                G      V  +S  L  LK +      
Sbjct: 64  TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI 123

Query: 147 FNNSIFSSL--GGLSSLRILSLADNRLNGSIDIKGL-DSLSNLEELDMSYNAIDNLVVPQ 203
            ++     L       L  L L       +  +  +      ++ L M  ++        
Sbjct: 124 VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW 183

Query: 204 GLERLSTLSNLKFLRLDYNSF----NSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQA 259
             E     ++L+ L      F       + +      SL  + + D              
Sbjct: 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF------------- 230

Query: 260 SSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTL 319
                    ++LV              + +NLEE     +   ++ +P+ Y  L     L
Sbjct: 231 -------EILELVGF----------FKAAANLEEFC-GGSLNEDIGMPEKYMNLVFPRKL 272

Query: 320 YLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHV 379
              G++ +  +++         ++ L LL+   +       +    NLE L     ++  
Sbjct: 273 CRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET--RNVIG 330

Query: 380 SQLLQSIASF-TSLKYLSIRGCVLKGALHGQDGG----TFPKFLYHQHDLKNVDLSHLNL 434
            + L+ +A +   LK L I     +  +  ++G               +L+ + +   ++
Sbjct: 331 DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDI 390

Query: 435 SGKFPNWLVENNTNLKTLLLAN---------NSLFGSFRMPIHSHQKLATLDVSTN--FF 483
           + +    +     NL    L             L    R  +   +KL            
Sbjct: 391 TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL 450

Query: 484 RGHIPVEIGTYLSGLMDLNLSRNAF-NGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAI 542
                  IG Y   +  + L      +  +         L+ L++     +         
Sbjct: 451 TDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT 510

Query: 543 GCFSLEILALSNNNLQ---GHIFSKKFNLTNLMRLQLDGNKFIG 583
              SL  L +           +        N+  +       + 
Sbjct: 511 KLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVN 554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.5 bits (110), Expect = 4e-05
 Identities = 65/421 (15%), Positives = 133/421 (31%), Gaps = 49/421 (11%)

Query: 338 SLPSLKTLYLLFTNFKGTIVNQELH-----NFTNLEELLLVKSDLHVSQLLQSIASF-TS 391
           +L  LK+++         + + +L         +LE L L K     +  L SI +    
Sbjct: 110 NLRQLKSVHFRRM----IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRK 165

Query: 392 LKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHL---NLSGKFPNWLVENNTN 448
           +K L +       +   +DG    +   H   L+ ++        +S K    +  N  +
Sbjct: 166 IKTLLMEES----SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221

Query: 449 LKTLLLANNSL--FGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRN 506
           L ++ + +  +     F     + ++     ++ +       + +      L  L LS  
Sbjct: 222 LVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK-LCRLGLSYM 280

Query: 507 AFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKF 566
             N  +P  F     ++ LD+ Y  L  E    +   C +LE+L   N      +     
Sbjct: 281 GPNE-MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQ 339

Query: 567 NLTNLMRLQLDGNKFIGEIPKSLSK------------CYLLGGLYLSDNHLSGK----IP 610
               L RL+++       +                  C  L  + +  + ++ +    I 
Sbjct: 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399

Query: 611 RWLGNLSALEDIIMPNNNLEGPIPIE------FCQLDYLKILDLSNN----TIFGTLPSC 660
            +L NL     +++        +P++            L+           T  G     
Sbjct: 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG 459

Query: 661 FSPAYIEEIHLSKNKIEGR-LESIIHYSPYLMTLDLSYNCLH-GSIPTWIDRLPQLSYLL 718
                +  + L         L       P L  L++   C    +I   + +LP L YL 
Sbjct: 460 QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW 519

Query: 719 L 719
           +
Sbjct: 520 V 520

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.7 bits (158), Expect = 6e-11
 Identities = 48/316 (15%), Positives = 92/316 (29%), Gaps = 63/316 (19%)

Query: 109 LESLDLSWNNIAGCVENEGVERLSRL----NNLKFLLLDSNYFNN----SIFSSLGGLSS 160
           +E   L  + I      E  + +  +    +++K ++L  N         +  ++     
Sbjct: 6   IEGKSLKLDAI----TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 61

Query: 161 LRILSLADNRLNGSIDI---------KGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTL 211
           L I   +D       D          + L     L  + +S NA         ++ LS  
Sbjct: 62  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 121

Query: 212 SNLKFLRLDYNSF-------------NSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQ 258
           + L+ L L  N                 ++         LR +    NR    ++    +
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR----LENGSMK 177

Query: 259 A-SSILRVPSFVDLVSLSSWSVG-------INTGLDSLSNLEELDMTNNAINNLVVPKDY 310
             +   +    +  V +    +        +  GL     L+ LD+ +N   +L      
Sbjct: 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237

Query: 311 RCLRK---LNTLYLG-------GIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKG----TI 356
             L+    L  L L        G A +              L+TL L +   +     T+
Sbjct: 238 IALKSWPNLRELGLNDCLLSARGAAAV--VDAFSK-LENIGLQTLRLQYNEIELDAVRTL 294

Query: 357 VNQELHNFTNLEELLL 372
                    +L  L L
Sbjct: 295 KTVIDEKMPDLLFLEL 310

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.0 bits (156), Expect = 8e-11
 Identities = 46/230 (20%), Positives = 72/230 (31%), Gaps = 43/230 (18%)

Query: 107 QQLESLDLSWNNIAGCVENEGVERLSRL----NNLKFLLLDSNYF-------------NN 149
            +L ++ LS N           E L         L+ L L +N                 
Sbjct: 94  PKLHTVRLSDNAF----GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL 149

Query: 150 SIFSSLGGLSSLRILSLADNRL--NGSIDI-KGLDSLSNLEELDMSYNAIDNLVVPQGL- 205
           ++         LR +    NRL      +  K   S   L  + M  N I    +   L 
Sbjct: 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL 209

Query: 206 ERLSTLSNLKFLRLDYNSFN----SSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQA-S 260
           E L+    LK L L  N+F     S++  +L    +LR L L D      +  +G  A  
Sbjct: 210 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL----LSARGAAAVV 265

Query: 261 SILRVPSFVDLVSLSSWSVGI-NTGLDSL--------SNLEELDMTNNAI 301
                   + L +L      I    + +L         +L  L++  N  
Sbjct: 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 61.3 bits (149), Expect = 6e-10
 Identities = 62/392 (15%), Positives = 119/392 (30%), Gaps = 112/392 (28%)

Query: 424 LKNVDLSHLNLSGKFPNWL-----------VENNTNLKTLLLANNSL-------FGSFRM 465
           +    +   +L     + +           +  + ++K ++L+ N++             
Sbjct: 1   MARFSIEGKSLKL---DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN-- 55

Query: 466 PIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSL 525
            I S + L   + S  F  G +  EI   L  L+               +      L ++
Sbjct: 56  -IASKKDLEIAEFSDIFT-GRVKDEIPEALRLLL--------------QALLKCPKLHTV 99

Query: 526 DISYNQLTGEIPDRMA---IGCFSLEILALSNNNL-------------QGHIFSKKFNLT 569
            +S N       + +         LE L L NN L             +  +  K  N  
Sbjct: 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP 159

Query: 570 NLMRLQLDGNKFIGE-----IPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIM 624
            L  +    N+ +         K+     LL  + +  N +  +     G    L + + 
Sbjct: 160 PLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE-----GIEHLLLEGLA 213

Query: 625 PNNNLEGPIPIEFCQLDYLKILDLSNNTI--------FGTLPSCFSPAYIEEIHLSKNKI 676
               L              K+LDL +NT            L S  +   + E+ L+   +
Sbjct: 214 YCQEL--------------KVLDLQDNTFTHLGSSALAIALKSWPN---LRELGLNDCLL 256

Query: 677 EGR--------LESIIHYSPYLMTLDLSYNCLHGSIPTWI-----DRLPQLSYLLLANNY 723
             R           + +    L TL L YN +       +     +++P L +L L  N 
Sbjct: 257 SARGAAAVVDAFSKLENIG--LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314

Query: 724 I--EGEIPIQICQLKEVR----LIDLSHNNLS 749
              E ++  +I ++   R    L +L      
Sbjct: 315 FSEEDDVVDEIREVFSTRGRGELDELDDMEEL 346

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 27/144 (18%)

Query: 100 ASLFTPFQQLESLDLSWNNIAGCVENEGVER-----LSRLNNLKFLLLDSNYFNN----S 150
           A  F   + L ++ +  N I      EG+E      L+    LK L L  N F +    +
Sbjct: 180 AKTFQSHRLLHTVKMVQNGI----RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235

Query: 151 IFSSLGGLSSLRILSLADNRL--NGSIDI-KGLDSLSN--LEELDMSYNAIDNLVVPQGL 205
           +  +L    +LR L L D  L   G+  +      L N  L+ L + YN I+       +
Sbjct: 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL----DAV 291

Query: 206 ERLST-----LSNLKFLRLDYNSF 224
             L T     + +L FL L+ N F
Sbjct: 292 RTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 50/294 (17%), Positives = 84/294 (28%), Gaps = 49/294 (16%)

Query: 359 QELHNFTNLEELLLVK---SDLHVSQLLQSIASFTSLKYLSIRGCVL--KGALHGQDGGT 413
             L    +++E++L            L ++IAS   L+                 +    
Sbjct: 26  AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL 85

Query: 414 FPKFLYHQHDLKNVDLSHLNLSGKFPNWLVE---NNTNLKTLLLANNSL----------- 459
             + L     L  V LS           L++    +T L+ L L NN L           
Sbjct: 86  LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA 145

Query: 460 --FGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYL---SGLMDLNLSRNAFN----- 509
               +      +   L ++    N        E          L  + + +N        
Sbjct: 146 LQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE 205

Query: 510 GSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIG-----CFSLEILALSNNNLQG----H 560
             +    A  + LK LD+  N  T       A+        +L  L L++  L       
Sbjct: 206 HLLLEGLAYCQELKVLDLQDNTFTHL--GSSALAIALKSWPNLRELGLNDCLLSARGAAA 263

Query: 561 IFS--KKFNLTNLMRLQLDGNKFIGE-----IPKSL-SKCYLLGGLYLSDNHLS 606
           +     K     L  L+L  N+ I       +   +  K   L  L L+ N  S
Sbjct: 264 VVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 46/295 (15%), Positives = 95/295 (32%), Gaps = 59/295 (20%)

Query: 78  VIKLDLGDIKNRKNRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRL--- 134
           V  L+L    N  + KS   L  +L      +  LDL WN+      ++      +    
Sbjct: 82  VTSLNLSG--NFLSYKSSDELVKTLAAIPFTITVLDLGWNDF----SSKSSSEFKQAFSN 135

Query: 135 --NNLKFLLLDSNYFNN----SIFSSLGGL-SSLRILSLADNRL--NGSIDI-KGLDSL- 183
              ++  L L  N         +   L  + +++  L+L  N L      ++ K L S+ 
Sbjct: 136 LPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP 195

Query: 184 SNLEELDMSYNAIDNLVVPQGLERLSTL-----SNLKFLRLDYNSFNSS----IFSSLGG 234
           +++  LD+S N +      +    L+ +     +++  L L  N  +      +      
Sbjct: 196 ASVTSLDLSANLLGL----KSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251

Query: 235 LSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEEL 294
           L  L+ + L  +      ++  +Q  ++                        ++  +  +
Sbjct: 252 LKHLQTVYLDYDIVK---NMSKEQCKALGAA-------------------FPNIQKIILV 289

Query: 295 DMTNNAINNLVVPKDYRCLR----KLNTLYLGGIAMIDGSKVLQSIGSLPSLKTL 345
           D     I+          +R    K +   L    +I   K   +I  L     L
Sbjct: 290 DKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDEL 344

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 55/342 (16%), Positives = 120/342 (35%), Gaps = 63/342 (18%)

Query: 78  VIKLDLGDIKNRKNRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRL--- 134
           V  LDL    N     S   L  +       + SL+LS N++      +  + L ++   
Sbjct: 24  VTSLDLSL--NNLYSISTVELIQAFANTPASVTSLNLSGNSL----GFKNSDELVQILAA 77

Query: 135 --NNLKFLLLDSNYFNNSIFSSLGGL-----SSLRILSLADNRL--NGSIDI-KGLDSL- 183
              N+  L L  N+ +      L         ++ +L L  N      S +  +   +L 
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 184 SNLEELDMSYNAIDNLVVPQGLERLSTL-----SNLKFLRLDYNSFNSS----IFSSLGG 234
           +++  L++  N +      +  + L  +     +N+  L L  N+  S     +   L  
Sbjct: 138 ASITSLNLRGNDLGI----KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS 193

Query: 235 L-SSLRILSLADNRFNGSIDIKGKQ--ASSILRVPSFVDLVSLSSWSVG------INTGL 285
           + +S+  L L+ N     + +K     A     +P+ V  ++L    +       +    
Sbjct: 194 IPASVTSLDLSANL----LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249

Query: 286 DSLSNLEELDMTNNAINNL------VVPKDYRCLRKLNTLYLGGIAMIDG-----SKVLQ 334
           DSL +L+ + +  + + N+       +   +  ++K+  +   G  +        S +++
Sbjct: 250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIR 309

Query: 335 SIGSLPSLKTLYL----LFTNFKGTIVNQELHNFTNLEELLL 372
            +          L    L    K     ++L+    L E + 
Sbjct: 310 ELSG--KADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQ 349

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 44/282 (15%), Positives = 100/282 (35%), Gaps = 54/282 (19%)

Query: 107 QQLESLDLSWNNIAGCVENEGVERLSRL-----NNLKFLLLDSNYFNN----SIFSSLGG 157
             + SLDLS NN+     +     L +       ++  L L  N         +   L  
Sbjct: 22  HGVTSLDLSLNNL----YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 158 L-SSLRILSLADNRLNGSIDIKGL-----DSLSNLEELDMSYNAIDNLVVPQGLERLSTL 211
           + +++  L+L+ N L        L          +  LD+ +N        +        
Sbjct: 78  IPANVTSLNLSGNFL-SYKSSDELVKTLAAIPFTITVLDLGWNDFS----SKSSSEFKQA 132

Query: 212 -----SNLKFLRLDYNSFN----SSIFSSLGGL-SSLRILSLADNRF--NGSIDIKGKQA 259
                +++  L L  N         +   L  + +++  L+L  N        ++    A
Sbjct: 133 FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAEL----A 188

Query: 260 SSILRVPSFVDLVSLSSWSVGINTGLDSLS--------NLEELDMTNNAINNLVVP---K 308
             +  +P+ V  + LS+  +G       L+        ++  L++  N ++   +     
Sbjct: 189 KFLASIPASVTSLDLSANLLG-LKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247

Query: 309 DYRCLRKLNTLYLGGIAMID-GSKVLQSIGS-LPSLKTLYLL 348
               L+ L T+YL    + +   +  +++G+  P+++ + L+
Sbjct: 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILV 289

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 42/261 (16%), Positives = 75/261 (28%), Gaps = 53/261 (20%)

Query: 429 LSHLNLSG---------KFPNWLVENNTNLKTLLLANNSLFGS-----FRMPIHSHQKLA 474
           ++ LNLSG         +    L     N+ +L L+ N L         +        + 
Sbjct: 53  VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTIT 112

Query: 475 TLDVSTNFFRGHIPVEIGTYL----SGLMDLNLSRNAFNGSIPSSFADM-----KMLKSL 525
            LD+  N F      E         + +  LNL  N            +       + SL
Sbjct: 113 VLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172

Query: 526 DISYNQLTGE----IPDRMAIGCFSLEILALSNNNLQ---GHIFSK--KFNLTNLMRLQL 576
           ++  N L  +    +   +A    S+  L LS N L        +        +++ L L
Sbjct: 173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNL 232

Query: 577 DGNKF----IGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGP 632
             N      +  +         L  +YL  + +          L A              
Sbjct: 233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA------------- 279

Query: 633 IPIEFCQLDYLKILDLSNNTI 653
               F  +  + ++D +   I
Sbjct: 280 ----FPNIQKIILVDKNGKEI 296

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.4 bits (147), Expect = 6e-10
 Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 18/183 (9%)

Query: 501 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQ-- 558
           L+L  N  +     +F  +  L+ L ++ N+L   +P  +     +LE L +++N LQ  
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL 100

Query: 559 -GHIFSKKFNLTNLMRLQLDGNKFIGEIPK----SLSKCYLLGGLYLSDNHLSGKIPRWL 613
              +F     L NL  L+LD N+ +  +P     SL+K   L  L L  N L   +P+ +
Sbjct: 101 PIGVFD---QLVNLAELRLDRNQ-LKSLPPRVFDSLTK---LTYLSLGYNELQ-SLPKGV 152

Query: 614 -GNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSP-AYIEEIHL 671
              L++L+++ + NN L+      F +L  LK L L NN +       F     ++ + L
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212

Query: 672 SKN 674
            +N
Sbjct: 213 QEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 15/152 (9%)

Query: 98  LNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFN---NSIFSS 154
           L +  F    +L  L L+ N +       G+     L NL+ L +  N        +F  
Sbjct: 52  LPSKAFHRLTKLRLLYLNDNKLQTL--PAGI--FKELKNLETLWVTDNKLQALPIGVFD- 106

Query: 155 LGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNL 214
              L +L  L L  N+L  S+  +  DSL+ L  L + YN + +L  P+G+     L++L
Sbjct: 107 --QLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSL--PKGV--FDKLTSL 159

Query: 215 KFLRLDYNSFNSSIFSSLGGLSSLRILSLADN 246
           K LRL  N        +   L+ L+ L L +N
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 15/154 (9%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFN---NSIF 152
           + L A +F   + LE+L ++ N +       GV    +L NL  L LD N        +F
Sbjct: 74  QTLPAGIFKELKNLETLWVTDNKLQAL--PIGV--FDQLVNLAELRLDRNQLKSLPPRVF 129

Query: 153 SSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLS 212
                L+ L  LSL  N L  S+     D L++L+EL +  N +  +  P+G      L+
Sbjct: 130 D---SLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRV--PEGA--FDKLT 181

Query: 213 NLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADN 246
            LK L+LD N        +   L  L++L L +N
Sbjct: 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.9 bits (138), Expect = 8e-09
 Identities = 54/207 (26%), Positives = 84/207 (40%), Gaps = 49/207 (23%)

Query: 159 SSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLR 218
           +  + L L  N+L+ S+  K    L+ L  L ++ N +  L  P G+     L NL+ L 
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTL--PAGI--FKELKNLETLW 91

Query: 219 LDYNSFNS---SIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPS--FVDLVS 273
           +  N   +    +F     L +L  L L  N           Q  S+   P   F  L  
Sbjct: 92  VTDNKLQALPIGVFD---QLVNLAELRLDRN-----------QLKSL---PPRVFDSLTK 134

Query: 274 LSSWSVGIN--TGL-----DSLSNLEELDMTNNAINNLVVPKD-YRCLRKLNTLYLGGIA 325
           L+  S+G N    L     D L++L+EL + NN +  +  P+  +  L +L TL L    
Sbjct: 135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV--PEGAFDKLTELKTLKL---- 188

Query: 326 MIDGSKVLQSI-----GSLPSLKTLYL 347
               +  L+ +      SL  LK L L
Sbjct: 189 ---DNNQLKRVPEGAFDSLEKLKMLQL 212

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 54.2 bits (131), Expect = 6e-08
 Identities = 59/228 (25%), Positives = 84/228 (36%), Gaps = 58/228 (25%)

Query: 511 SIPSS-FADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQ---GHIFSKKF 566
           +IPS+  AD    K LD+  N+L+  +P +       L +L L++N LQ     IF +  
Sbjct: 30  AIPSNIPAD---TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE-- 83

Query: 567 NLTNLMRLQLDGNKFIGEIP----KSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDI 622
            L NL  L +  NK +  +P      L     L  L L  N L   +P  +         
Sbjct: 84  -LKNLETLWVTDNK-LQALPIGVFDQLVN---LAELRLDRNQLK-SLPPRV--------- 128

Query: 623 IMPNNNLEGPIPIEFCQLDYLKILDLSNNTI-------FGTLPSCFSPAYIEEIHLSKNK 675
                         F  L  L  L L  N +       F  L S      ++E+ L  N+
Sbjct: 129 --------------FDSLTKLTYLSLGYNELQSLPKGVFDKLTS------LKELRLYNNQ 168

Query: 676 IEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWI-DRLPQLSYLLLANN 722
           ++   E        L TL L  N L   +P    D L +L  L L  N
Sbjct: 169 LKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 52/205 (25%), Positives = 80/205 (39%), Gaps = 53/205 (25%)

Query: 212 SNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPS--FV 269
           ++ K L L  N  +S    +   L+ LR+L L DN+              +  +P+  F 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK--------------LQTLPAGIFK 82

Query: 270 DLVSL----------SSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKD-YRCLRKLNT 318
           +L +L           +  +G+    D L NL EL +  N + +L  P   +  L KL  
Sbjct: 83  ELKNLETLWVTDNKLQALPIGV---FDQLVNLAELRLDRNQLKSL--PPRVFDSLTKLTY 137

Query: 319 LYLGGIAMIDGSKVLQSI-----GSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLV 373
           L LG          LQS+       L SLK L  L+ N    +        T L+ L   
Sbjct: 138 LSLGYNE-------LQSLPKGVFDKLTSLKELR-LYNNQLKRVPEGAFDKLTELKTL--- 186

Query: 374 KSDLHVSQLLQSIA--SFTSLKYLS 396
              L  +Q L+ +   +F SL+ L 
Sbjct: 187 --KLDNNQ-LKRVPEGAFDSLEKLK 208

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 15/134 (11%)

Query: 501 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQ-- 558
           + L +N      P +F+  K L+ +D+S NQ++ E+      G  SL  L L  N +   
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 559 -GHIFSKKFNLTNLMRLQLDGNKFIGEIPK----SLSKCYLLGGLYLSDNHLSGKIPRWL 613
              +F     L +L  L L+ NK I  +       L     L  L L DN L        
Sbjct: 96  PKSLFEG---LFSLQLLLLNANK-INCLRVDAFQDLHN---LNLLSLYDNKLQTIAKGTF 148

Query: 614 GNLSALEDIIMPNN 627
             L A++ + +  N
Sbjct: 149 SPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 34/142 (23%), Positives = 52/142 (36%), Gaps = 19/142 (13%)

Query: 110 ESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSL-----GGLSSLRIL 164
             + L  N I            S    L+ + L     NN I S L      GL SL  L
Sbjct: 35  TEIRLEQNTIKVIPPGA----FSPYKKLRRIDLS----NNQI-SELAPDAFQGLRSLNSL 85

Query: 165 SLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSF 224
            L  N++   +     + L +L+ L ++ N I+ L           L NL  L L  N  
Sbjct: 86  VLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCL--RVDA--FQDLHNLNLLSLYDNKL 140

Query: 225 NSSIFSSLGGLSSLRILSLADN 246
            +    +   L +++ + LA N
Sbjct: 141 QTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 15/133 (11%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSN---YFNNSIF 152
           + +    F+P+++L  +DLS N I+             L +L  L+L  N       S+F
Sbjct: 45  KVIPPGAFSPYKKLRRIDLSNNQISEL--APDA--FQGLRSLNSLVLYGNKITELPKSLF 100

Query: 153 SSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLS 212
               GL SL++L L  N++N  + +     L NL  L +  N +    + +G    S L 
Sbjct: 101 E---GLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQT--IAKGT--FSPLR 152

Query: 213 NLKFLRLDYNSFN 225
            ++ + L  N F 
Sbjct: 153 AIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 33/134 (24%), Positives = 44/134 (32%), Gaps = 17/134 (12%)

Query: 598 LYLSDNHLSGKIPRW-LGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTI--- 653
           + L  N +   IP         L  I + NN +    P  F  L  L  L L  N I   
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 654 ----FGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWI- 708
               F  L S      ++ + L+ NKI             L  L L  N L  +I     
Sbjct: 96  PKSLFEGLFS------LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTF 148

Query: 709 DRLPQLSYLLLANN 722
             L  +  + LA N
Sbjct: 149 SPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 12/114 (10%)

Query: 447 TNLKTLLLANNSL----FGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLN 502
             L+ + L+NN +      +F       + L +L +  N     +P  +   L  L  L 
Sbjct: 56  KKLRRIDLSNNQISELAPDAF----QGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLL 110

Query: 503 LSRNAFNGSIPS-SFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNN 555
           L+ N  N  +   +F D+  L  L +  N+L   I         +++ + L+ N
Sbjct: 111 LNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 37/162 (22%), Positives = 61/162 (37%), Gaps = 43/162 (26%)

Query: 201 VPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQAS 260
           +P  L        +  +RL+ N+       +      LR + L++N              
Sbjct: 26  IPTNLP-----ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-------------- 66

Query: 261 SILRVPS--FVDLVSLSSWSVGIN--TGL-----DSLSNLEELDMTNNAINNLVVPKD-Y 310
            I  +    F  L SL+S  +  N  T L     + L +L+ L +  N IN L    D +
Sbjct: 67  QISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCL--RVDAF 124

Query: 311 RCLRKLNTLYLGGIAMIDGSKVLQSI-----GSLPSLKTLYL 347
           + L  LN L L           LQ+I       L +++T++L
Sbjct: 125 QDLHNLNLLSL-------YDNKLQTIAKGTFSPLRAIQTMHL 159

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 4/105 (3%)

Query: 645 ILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSI 704
           ++ L+   I        +     E+ L   KI   +E++         +D S N +   +
Sbjct: 1   MVKLTAELI-EQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL 57

Query: 705 PTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLS 749
             +   L +L  LL+ NN I          L ++  + L++N+L 
Sbjct: 58  DGF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 29/124 (23%), Positives = 44/124 (35%), Gaps = 15/124 (12%)

Query: 85  DIKNRKNRKSERHLNAS---------LFTPFQQLESLDLSWNNIAGCVENEGVERLSRLN 135
                 N   +R L+           L     Q +++D S N I        ++    L 
Sbjct: 11  QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI------RKLDGFPLLR 64

Query: 136 NLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNA 195
            LK LL+++N            L  L  L L +N L    D+  L SL +L  L +  N 
Sbjct: 65  RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP 124

Query: 196 IDNL 199
           + N 
Sbjct: 125 VTNK 128

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 33/160 (20%), Positives = 48/160 (30%), Gaps = 41/160 (25%)

Query: 153 SSLGGLSSLRILSLADNRLNGSIDIKGLDS-LSNLEELDMSYNAIDNLVVPQGLERLSTL 211
           +        R L L   ++     I+ L + L   + +D S N I  L      +    L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP---VIENLGATLDQFDAIDFSDNEIRKL------DGFPLL 63

Query: 212 SNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDL 271
             LK L ++ N            L  L  L L +N                       +L
Sbjct: 64  RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV--------------------EL 103

Query: 272 VSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYR 311
             L          L SL +L  L +  N + N    K YR
Sbjct: 104 GDLDP--------LASLKSLTYLCILRNPVTNK---KHYR 132

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 8/133 (6%)

Query: 567 NLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPN 626
           N      L L G K I  I    +       +  SDN +  K+      L  L+ +++ N
Sbjct: 17  NAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNN 73

Query: 627 NNLEGPIPIEFCQLDYLKILDLSNNTI--FGTLPSCFSPAYIEEIHLSKN---KIEGRLE 681
           N +          L  L  L L+NN++   G L    S   +  + + +N     +    
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRL 133

Query: 682 SIIHYSPYLMTLD 694
            +I+  P +  LD
Sbjct: 134 YVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 29/173 (16%), Positives = 45/173 (26%), Gaps = 62/173 (35%)

Query: 176 DIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGL 235
                 +     ELD+    I  +   + L   +TL     +    N            L
Sbjct: 11  QAAQYTNAVRDRELDLRGYKIPVI---ENLG--ATLDQFDAIDFSDNEIRK--LDGFPLL 63

Query: 236 SSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELD 295
             L+ L + +NR              I                        +L +L EL 
Sbjct: 64  RRLKTLLVNNNRI-----------CRIG------------------EGLDQALPDLTELI 94

Query: 296 MTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLL 348
           +TNN++  L                            L  + SL SL  L +L
Sbjct: 95  LTNNSLVEL--------------------------GDLDPLASLKSLTYLCIL 121

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 27/121 (22%), Positives = 39/121 (32%), Gaps = 13/121 (10%)

Query: 283 TGLDSLSNLEELDMTNN---AINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSL 339
               +     ELD+       I NL        L + + +        +  + L     L
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLG-----ATLDQFDAIDFSD----NEIRKLDGFPLL 63

Query: 340 PSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRG 399
             LKTL +        I         +L EL+L  + L     L  +AS  SL YL I  
Sbjct: 64  RRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122

Query: 400 C 400
            
Sbjct: 123 N 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 55.1 bits (133), Expect = 7e-09
 Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 6/109 (5%)

Query: 91  NRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNS 150
           N KS       L   F  LE L L    +        V  L +L  LK L L  N     
Sbjct: 33  NCKSNDGKIEGLTAEFVNLEFLSLINVGL------ISVSNLPKLPKLKKLELSENRIFGG 86

Query: 151 IFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNL 199
           +      L +L  L+L+ N+L     ++ L  L  L+ LD+    + NL
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 33/154 (21%), Positives = 52/154 (33%), Gaps = 37/154 (24%)

Query: 158 LSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFL 217
            +++R L L + + N            NLE L +    + +      +  L  L  LK L
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS------VSNLPKLPKLKKL 76

Query: 218 RLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSW 277
            L  N     +      L +L  L+L+ N+                      D+ +L   
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK--------------------DISTLEP- 115

Query: 278 SVGINTGLDSLSNLEELDMTNNAINNLVVPKDYR 311
                  L  L  L+ LD+ N  + NL    DYR
Sbjct: 116 -------LKKLECLKSLDLFNCEVTNL---NDYR 139

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 3/89 (3%)

Query: 662 SPAYIEEIHLSKNKI-EGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLA 720
           +PA + E+ L   K  +G++E +      L  L L    L  S+   + +LP+L  L L+
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELS 79

Query: 721 NNYIEGEIPIQICQLKEVRLIDLSHNNLS 749
            N I G + +   +L  +  ++LS N L 
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 30/137 (21%), Positives = 51/137 (37%), Gaps = 8/137 (5%)

Query: 564 KKFNLTNLMRLQLDGNKF-IGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDI 622
           +      +  L LD  K   G+I    ++   L  L L +  L   +   L  L  L+ +
Sbjct: 19  RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKL 76

Query: 623 IMPNNNLEGPIPIEFCQLDYLKILDLSNNTI--FGTLPSCFSPAYIEEIHLSKN---KIE 677
            +  N + G + +   +L  L  L+LS N +    TL        ++ + L       + 
Sbjct: 77  ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136

Query: 678 GRLESIIHYSPYLMTLD 694
              ES+    P L  LD
Sbjct: 137 DYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 5/114 (4%)

Query: 287 SLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLY 346
           + + + EL + N   N+  +         L  L L  + +      + ++  LP LK L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL----ISVSNLPKLPKLKKLE 77

Query: 347 LLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGC 400
            L  N     ++       NL  L L  + L     L+ +     LK L +  C
Sbjct: 78  -LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.8 bits (135), Expect = 9e-09
 Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 15/136 (11%)

Query: 475 TLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTG 534
            L ++ N F       I   L  L  +N S N        +F     +  + ++ N+L  
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE- 94

Query: 535 EIPDRMAIGCFSLEILALSNNNLQ---GHIFSKKFNLTNLMRLQLDGNKFIGEIPK---- 587
            +  +M  G  SL+ L L +N +       F     L+++  L L  N+ I  +      
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIG---LSSVRLLSLYDNQ-ITTVAPGAFD 150

Query: 588 SLSKCYLLGGLYLSDN 603
           +L     L  L L  N
Sbjct: 151 TLHS---LSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 37/128 (28%), Positives = 53/128 (41%), Gaps = 15/128 (11%)

Query: 101 SLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSN---YFNNSIFSSLGG 157
            +F    QL  ++ S N I   +E EG       + +  +LL SN      + +F    G
Sbjct: 51  GIFKKLPQLRKINFSNNKITD-IE-EGA--FEGASGVNEILLTSNRLENVQHKMFK---G 103

Query: 158 LSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFL 217
           L SL+ L L  NR+   +       LS++  L +  N I    V  G     TL +L  L
Sbjct: 104 LESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITT--VAPGA--FDTLHSLSTL 158

Query: 218 RLDYNSFN 225
            L  N FN
Sbjct: 159 NLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 34/169 (20%), Positives = 53/169 (31%), Gaps = 42/169 (24%)

Query: 159 SSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLR 218
                L L +N             L  L +++ S N I ++   +G       S +  + 
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI--EEGA--FEGASGVNEIL 87

Query: 219 LDYN---SFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLS 275
           L  N   +    +F    GL SL+ L L  NR              I  V +        
Sbjct: 88  LTSNRLENVQHKMFK---GLESLKTLMLRSNR--------------ITCVGNDS------ 124

Query: 276 SWSVGINTGLDSLSNLEELDMTNNAINNLVVPKD-YRCLRKLNTLYLGG 323
                       LS++  L + +N I    V    +  L  L+TL L  
Sbjct: 125 ---------FIGLSSVRLLSLYDNQITT--VAPGAFDTLHSLSTLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 30/159 (18%)

Query: 423 DLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNF 482
               + L++   +      + +    L+ +  +NN              K+  ++     
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN--------------KITDIEEGA-- 76

Query: 483 FRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSS-FADMKMLKSLDISYNQLTGEIPDRMA 541
           F G          SG+ ++ L+ N    ++    F  ++ LK+L +  N++T  + +   
Sbjct: 77  FEG---------ASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSF 125

Query: 542 IGCFSLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGN 579
           IG  S+ +L+L +N +   +    F  L +L  L L  N
Sbjct: 126 IGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 10/134 (7%)

Query: 523 KSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFN-LTNLMRLQLDGNKF 581
             L ++ N+ T      +      L  +  SNN +   I    F   + +  + L  N+ 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNR- 92

Query: 582 IGEIP----KSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEF 637
           +  +     K L     L  L L  N ++         LS++  + + +N +    P  F
Sbjct: 93  LENVQHKMFKGLES---LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149

Query: 638 CQLDYLKILDLSNN 651
             L  L  L+L  N
Sbjct: 150 DTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 27/134 (20%), Positives = 44/134 (32%), Gaps = 16/134 (11%)

Query: 598 LYLSDNHLSGKIPR-WLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTI--- 653
           L L++N  +          L  L  I   NN +       F     +  + L++N +   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96

Query: 654 ----FGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWI- 708
               F  L S      ++ + L  N+I             +  L L  N +  ++     
Sbjct: 97  QHKMFKGLES------LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAF 149

Query: 709 DRLPQLSYLLLANN 722
           D L  LS L L  N
Sbjct: 150 DTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 11/105 (10%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSN---YFNNSIF 152
             +    F     +  + L+ N +        +     L +LK L+L SN      N  F
Sbjct: 70  TDIEEGAFEGASGVNEILLTSNRLENV--QHKM--FKGLESLKTLMLRSNRITCVGNDSF 125

Query: 153 SSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAID 197
               GLSS+R+LSL DN++  ++     D+L +L  L++  N  +
Sbjct: 126 I---GLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 30/122 (24%), Positives = 44/122 (36%), Gaps = 20/122 (16%)

Query: 637 FCQLDYLKILDLSNNTIFGTLPSCFSPA-YIEEIHLSKNKIEGRLESIIHYSPYLMTLDL 695
           F +L  L+ ++ SNN I       F  A  + EI L+ N++E     +      L TL L
Sbjct: 53  FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112

Query: 696 SYNCLHGSIPTWI-DRLPQLSYLLLANNYIEGEIPIQICQLKEV------RLIDLSHNNL 748
             N +   +       L  +  L L +N           Q+  V       L  LS  NL
Sbjct: 113 RSNRIT-CVGNDSFIGLSSVRLLSLYDN-----------QITTVAPGAFDTLHSLSTLNL 160

Query: 749 SG 750
             
Sbjct: 161 LA 162

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 6/109 (5%)

Query: 91  NRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNS 150
           N +S       L   F++LE L      +        +  L +LN LK L L  N  +  
Sbjct: 26  NSRSNEGKLEGLTDEFEELEFLSTINVGL------TSIANLPKLNKLKKLELSDNRVSGG 79

Query: 151 IFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNL 199
           +        +L  L+L+ N++     I+ L  L NL+ LD+    + NL
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 34/154 (22%), Positives = 53/154 (34%), Gaps = 37/154 (24%)

Query: 158 LSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFL 217
            S ++ L L ++R N        D    LE L      + +      +  L  L+ LK L
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS------IANLPKLNKLKKL 69

Query: 218 RLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSW 277
            L  N  +  +        +L  L+L+ N+                      DL ++   
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK--------------------DLSTIEP- 108

Query: 278 SVGINTGLDSLSNLEELDMTNNAINNLVVPKDYR 311
                  L  L NL+ LD+ N  + NL    DYR
Sbjct: 109 -------LKKLENLKSLDLFNCEVTNL---NDYR 132

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 32/171 (18%), Positives = 58/171 (33%), Gaps = 41/171 (23%)

Query: 179 GLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSL 238
              + S+++EL +  +  +     +          L+FL        S   ++L  L+ L
Sbjct: 12  RNRTPSDVKELVLDNSRSNE---GKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKL 66

Query: 239 RILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTN 298
           + L L+DNR                              S G+    +   NL  L+++ 
Sbjct: 67  KKLELSDNRV-----------------------------SGGLEVLAEKCPNLTHLNLSG 97

Query: 299 NAINNLVVPKDYRCLRKLNTLYLGG--IAMIDG--SKVLQSIGSLPSLKTL 345
           N I +L   +  + L  L +L L    +  ++     V      LP L  L
Sbjct: 98  NKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENV---FKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 8/134 (5%)

Query: 567 NLTNLMRLQLDGNKF-IGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMP 625
             +++  L LD ++   G++     +   L  L   +  L+  I   L  L+ L+ + + 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72

Query: 626 NNNLEGPIPIEFCQLDYLKILDLSNNTI--FGTLPSCFSPAYIEEIHLSKN---KIEGRL 680
           +N + G + +   +   L  L+LS N I    T+        ++ + L       +    
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYR 132

Query: 681 ESIIHYSPYLMTLD 694
           E++    P L  LD
Sbjct: 133 ENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 12/116 (10%)

Query: 235 LSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINT--GLDSLSNLE 292
            S ++ L L DN  +    ++G           F +L  LS+ +VG+ +   L  L+ L+
Sbjct: 16  PSDVKELVL-DNSRSNEGKLEGLTDE-------FEELEFLSTINVGLTSIANLPKLNKLK 67

Query: 293 ELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLL 348
           +L++++N ++  +          L  L L G   I     ++ +  L +LK+L L 
Sbjct: 68  KLELSDNRVSGGL-EVLAEKCPNLTHLNLSG-NKIKDLSTIEPLKKLENLKSLDLF 121

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 3/89 (3%)

Query: 662 SPAYIEEIHLSKNKI-EGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLA 720
           +P+ ++E+ L  ++  EG+LE +      L  L      L  SI   + +L +L  L L+
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72

Query: 721 NNYIEGEIPIQICQLKEVRLIDLSHNNLS 749
           +N + G + +   +   +  ++LS N + 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 7/116 (6%)

Query: 491 IGTYLSGLMDLNLSRNAFN-GSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEI 549
                S + +L L  +  N G +     + + L+ L      LT  I +        L+ 
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIANLPK--LNKLKK 68

Query: 550 LALSNNNLQGHIFSKKFNLTNLMRLQLDGNKF--IGEIPKSLSKCYLLGGLYLSDN 603
           L LS+N + G +        NL  L L GNK   +  I + L K   L  L L + 
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFNC 123

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 34/134 (25%), Positives = 49/134 (36%), Gaps = 16/134 (11%)

Query: 501 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLT---GEIPDRMAIGCFSLEILALSNNNL 557
           L L  N      P  F  +  LK L +  NQL      + D +      L +L L  N L
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT----QLTVLDLGTNQL 100

Query: 558 Q----GHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWL 613
                  +F +   L +L  L +  NK   E+P+ + +   L  L L  N L        
Sbjct: 101 TVLPSA-VFDR---LVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAF 155

Query: 614 GNLSALEDIIMPNN 627
             LS+L    +  N
Sbjct: 156 DRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 18/137 (13%)

Query: 523 KSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQ----GHIFSKKFNLTNLMRLQLDG 578
           + L +  NQ+T ++   +     +L+ L L +N L     G +F     LT L  L L  
Sbjct: 43  QILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVG-VFDS---LTQLTVLDLGT 97

Query: 579 NKFIGEIPK----SLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIP 634
           N+ +  +P      L     L  L++  N L+ ++PR +  L+ L  + +  N L+    
Sbjct: 98  NQ-LTVLPSAVFDRLVH---LKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH 152

Query: 635 IEFCQLDYLKILDLSNN 651
             F +L  L    L  N
Sbjct: 153 GAFDRLSSLTHAYLFGN 169

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 3e-08
 Identities = 87/535 (16%), Positives = 152/535 (28%), Gaps = 179/535 (33%)

Query: 486 HI----PVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDR-- 539
           HI        GT    L    LS+      +   F +    + L I+Y  L   I     
Sbjct: 53  HIIMSKDAVSGTLR--LFWTLLSKQE---EMVQKFVE----EVLRINYKFLMSPIKTEQR 103

Query: 540 ---MAIGCFSLEILALSNNNLQGHIFSKKF--------NLTN-LMRLQ------LDGNKF 581
              M    +  +   L N+N    +F+K           L   L+ L+      +DG   
Sbjct: 104 QPSMMTRMYIEQRDRLYNDN---QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160

Query: 582 IGEIPKSLSKCYLLGGLYLSDNHLSGKIPR---WL--GNLSALEDIIMPNNNLEGPIPIE 636
            G   K+      +         +  K+     WL   N ++ E ++     L   I   
Sbjct: 161 SG---KTW-----VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 637 FCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLS 696
           +         D S+N                 I L  + I+  L  ++   PY       
Sbjct: 213 WTSR-----SDHSSN-----------------IKLRIHSIQAELRRLLKSKPYE------ 244

Query: 697 YNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPC- 755
            NCL                L+L N          +   K     +LS          C 
Sbjct: 245 -NCL----------------LVLLN----------VQNAKAWNAFNLS----------CK 267

Query: 756 -LVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGR 814
            L+ T   +   + +         A+T    S+  +   +  +E      K         
Sbjct: 268 ILLTTR-FKQVTDFL--------SAATTTHISLDHHSMTLTPDEVKSLLLKY-------- 310

Query: 815 ILMSMSGIDLSCNKLTGEI----PTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQI--- 867
                  +D     L  E+    P ++  +    A ++           T+ N K +   
Sbjct: 311 -------LDCRPQDLPREVLTTNPRRLSII----AESIRDG------LATWDNWKHVNCD 353

Query: 868 ---ESLDLSYNLLLGKIPPQLI--VLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEG 922
                ++ S N+L     P     + + L+VF       S  IP  +     F+    + 
Sbjct: 354 KLTTIIESSLNVL----EPAEYRKMFDRLSVFPP-----SAHIPTILLSLIWFDVIKSDV 404

Query: 923 NPFLCGLPLSKS---CDDNGLTTATPEAYTENK-EGDSLIDMDSFLITFTVSYGI 973
              +  L    S         T + P  Y E K + ++   +   ++     Y I
Sbjct: 405 MVVVNKL-HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD---HYNI 455

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 4e-06
 Identities = 83/562 (14%), Positives = 179/562 (31%), Gaps = 160/562 (28%)

Query: 6   RVWVSELIFILLVVKGWWIEGCLEQERSALLQLKHFFNDDQRLQNWVDAADDENYSDCCQ 65
           R++    +F    V          + R ALL+L+            V             
Sbjct: 118 RLYNDNQVFAKYNV---SRLQPYLKLRQALLELRP--------AKNV------------- 153

Query: 66  WERVE----CNKT--TGRVIKLDLGDIKNRKNRKSERHLNASLFTPFQQLESLDLSWNNI 119
              ++      KT     V            + K +  ++  +F            W N+
Sbjct: 154 --LIDGVLGSGKTWVALDVC----------LSYKVQCKMDFKIF------------WLNL 189

Query: 120 AGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSS------LRILSLADNRLNG 173
             C   E V  L  L  L    +D N+ + S  SS   L        LR L L       
Sbjct: 190 KNCNSPETV--LEMLQKL-LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYEN 245

Query: 174 SIDIKGLDSLSNLEELDMSYNAIDN----LVVPQGLERLSTLSNLKFLRLDYNSFNSSIF 229
            + +  L ++ N +  +    A +     L+  +  +    LS      +       S+ 
Sbjct: 246 CLLV--LLNVQNAKAWN----AFNLSCKILLTTRFKQVTDFLSAATTTHI-------SLD 292

Query: 230 SSLGGLS---SLRILSLADNRFNGSIDIKGK----QASSI--LRVPSFVDLVS--LSSWS 278
                L+      +L          +D + +    +  +    R+    + +   L++W 
Sbjct: 293 HHSMTLTPDEVKSLLLKY-------LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345

Query: 279 VGINTGLDSLSNLEELDMTNNAINNLVVPKDYR-CLRKLNTLYLGGIAMIDGSKVLQSIG 337
              +   D L+ + E      ++N L  P +YR    +L       +     + +     
Sbjct: 346 NWKHVNCDKLTTIIES-----SLNVL-EPAEYRKMFDRL------SV-FPPSAHI----- 387

Query: 338 SLPSLKTLYLLFTNFKGTIVN---QELHNFTNLE----ELLLVKSDLHVSQLLQSIASFT 390
             P+   L L++ +   + V     +LH ++ +E    E  +    +++  L   + +  
Sbjct: 388 --PT-ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE-LKVKLENEY 443

Query: 391 SL------KYLSIRGCVLKGALHGQDGGTFPKFL-YHQHDLKNVDLSHLNLSGKFPNWLV 443
           +L       Y   +       +       F   + +H   LKN++         F    +
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH---LKNIEHPE--RMTLFRMVFL 498

Query: 444 ENNTNLKTL---LLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTY---LSG 497
               + + L   +  +++ + +    +++ Q+L        F++ +I      Y   ++ 
Sbjct: 499 ----DFRFLEQKIRHDSTAWNASGSILNTLQQL-------KFYKPYICDNDPKYERLVNA 547

Query: 498 LMDLNLSRNAFNGSIPSSFADM 519
           ++D  L +   N  I S + D+
Sbjct: 548 ILD-FLPKIEEN-LICSKYTDL 567

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 2e-05
 Identities = 111/733 (15%), Positives = 201/733 (27%), Gaps = 224/733 (30%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIA----GCVENEGVE-------RLSRLNNLKFLLLDS 144
           ++    + + F+     +    ++       +  E ++        +S    L + LL  
Sbjct: 15  QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74

Query: 145 NYFNNSIFSSLGGLSSLRILSLADN------RLNGSIDIKGLDSLSNLEELDMSYNAIDN 198
                 +   +  +       L  N       +        + +   +E+ D  YN  DN
Sbjct: 75  Q--EEMVQKFVEEV-------LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN--DN 123

Query: 199 LVVPQG-LERLSTLSNLK--FLRLDYNSFNSSIFSSLG-GLSSLRILSLADNR----FNG 250
            V  +  + RL     L+   L L     N  I   LG G + + +      +     + 
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAK-NVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 251 SI---DIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLE-ELDMTNNAINNLVV 306
            I   ++     S    +     L+     +    +  D  SN++  +      +  L+ 
Sbjct: 183 KIFWLNL-KNCNSPETVLEMLQKLLYQIDPN--WTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 307 PKDY-RCLRKLNTLYLGGIAMIDG---SKVLQS--IGSLPSLKTLYLLFTNFKGTIVNQE 360
            K Y  CL     L L           +K   +  +      K L  L T FK  + +  
Sbjct: 240 SKPYENCL-----LVL------LNVQNAKAWNAFNLSC----KIL--LTTRFKQ-VTDF- 280

Query: 361 LHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYH 420
                     L   +  H+S L     + T  +  S+                  K+L  
Sbjct: 281 ----------LSAATTTHIS-LDHHSMTLTPDEVKSL----------------LLKYL-- 311

Query: 421 QHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVST 480
             D +  DL    L+   P              L   S+             LAT D   
Sbjct: 312 --DCRPQDLPREVLTT-NP------------RRL---SIIAESI-----RDGLATWD--- 345

Query: 481 NFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRM 540
             ++ H+  +                             K+   ++ S N L    P   
Sbjct: 346 -NWK-HVNCD-----------------------------KLTTIIESSLNVLE---PAEY 371

Query: 541 AIGCFSLEILALSNNNLQGHIFSKKFNLTN--LMRL---------QLDGNKFIGEIPKSL 589
               F  + L+         +F    ++    L  +          +  NK       SL
Sbjct: 372 R-KMF--DRLS---------VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK---YSL 416

Query: 590 SKCYLLGGLY-LSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKI-LD 647
            +         +   +L  K+   L N  AL   I+ + N    IP  F   D +   LD
Sbjct: 417 VEKQPKESTISIPSIYLELKVK--LENEYALHRSIVDHYN----IPKTFDSDDLIPPYLD 470

Query: 648 LSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSY--NCLHGSIP 705
                 +  +       +    HL   +   R+         +  LD  +    +     
Sbjct: 471 ---QYFYSHI------GH----HLKNIEHPERMTLF----RMVF-LDFRFLEQKIRHDST 512

Query: 706 TWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHN------NLSGHIPPCLVNT 759
            W      L+ L     Y +  I        E  +  +         NL       L+  
Sbjct: 513 AWNASGSILNTLQQLKFY-KPYI-CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570

Query: 760 AL---NEG-YHEA 768
           AL   +E  + EA
Sbjct: 571 ALMAEDEAIFEEA 583

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 54.6 bits (130), Expect = 7e-08
 Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 9/137 (6%)

Query: 105 PFQQLESLDLSWNNI-AGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSL------GG 157
           P   L+SL++    +    VE+     L  L  L   +   +Y  +   +          
Sbjct: 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250

Query: 158 LSSLRILSLADNRL--NGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLK 215
             +L+ L + D              D L  LE +D+S   + +      L+ +  + +LK
Sbjct: 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310

Query: 216 FLRLDYNSFNSSIFSSL 232
           F+ + YN  +  +   L
Sbjct: 311 FINMKYNYLSDEMKKEL 327

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.6 bits (104), Expect = 1e-04
 Identities = 23/167 (13%), Positives = 48/167 (28%), Gaps = 19/167 (11%)

Query: 441 WLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGT-YLSGLM 499
            +++    L  L +   +   +  +       L +L++ +      +  +I    L  L 
Sbjct: 166 PVLDAMPLLNNLKIKGTN---NLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLE 222

Query: 500 DLNLSRNAFNGSIPSSFAD---------MKMLKSLDISYNQLTGEIPDRMAIGCF--SLE 548
            L L     +                     LK L I   +    + +          LE
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE 282

Query: 549 ILALSNNNLQG----HIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSK 591
            + +S   L       +      + +L  + +  N    E+ K L K
Sbjct: 283 TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 54.7 bits (132), Expect = 8e-08
 Identities = 38/230 (16%), Positives = 73/230 (31%), Gaps = 31/230 (13%)

Query: 106 FQQLESLDLSWNNIAGCVENEGVERLS---RLNN--LKFLLLDSNYFNNS----IFSSLG 156
           F +   L L  N++      E  + L      +   +  L L +N    +    +   L 
Sbjct: 125 FLRARKLGLQLNSL----GPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180

Query: 157 GLSSLRILSLADNRL--NGSIDI-KGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSN 213
           G +S+  LSL    L   G   +   LD    L+EL+++YN   +              +
Sbjct: 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPS 240

Query: 214 LKFLRLDYNSFNSS----IFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFV 269
           L+ L L +N  +S     +    G       + ++        +      S + R  +  
Sbjct: 241 LELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSW 300

Query: 270 DLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTL 319
           D              +     L   D+ ++    L   +  + LR    +
Sbjct: 301 D-----------RARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEV 339

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 37/282 (13%), Positives = 90/282 (31%), Gaps = 60/282 (21%)

Query: 107 QQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSL 166
             L  L+L+   +           ++       +L                  +L  ++L
Sbjct: 72  SSLRQLNLAGVRM----TPVKCTVVA------AVLGSGR-------------HALDEVNL 108

Query: 167 ADNRLN--GSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTL-----SNLKFLRL 219
           A  +L+  G   +  L       +L +  N++      +  + L  L       +  LRL
Sbjct: 109 ASCQLDPAGLRTL--LPVFLRARKLGLQLNSLGP----EACKDLRDLLLHDQCQITTLRL 162

Query: 220 DYNSFNSS----IFSSLGGLSSLRILSLADNRFNGSIDIKGKQA-SSILRVPSFVDLVSL 274
             N   ++    +   L G +S+  LSL        +  +G +  ++ L     +  +++
Sbjct: 163 SNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG----LGDEGLELLAAQLDRNRQLQELNV 218

Query: 275 SSWSVG------INTGLDSLSNLEELDMTNNAINNLVV------PKDYRCLRKLNTLYLG 322
           +    G      +        +LE L +  N +++                 ++      
Sbjct: 219 AYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTE 278

Query: 323 GIAMID-GSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHN 363
           G A+ +  S +L  +    +L +           ++ ++L +
Sbjct: 279 GTAVSEYWSVILSEV--QRNLNSWDRARVQRHLELLLRDLED 318

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 21/142 (14%), Positives = 46/142 (32%), Gaps = 15/142 (10%)

Query: 96  RHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRL----NNLKFLLLDSNYFNN-- 149
           + L   L     Q+ +L LS N +       GV  L        ++  L L      +  
Sbjct: 144 KDLRDLLLHDQCQITTLRLSNNPL----TAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEG 199

Query: 150 --SIFSSLGGLSSLRILSLADNRL--NGSIDI-KGLDSLSNLEELDMSYNAIDNLVVPQG 204
              + + L     L+ L++A N      ++ + +      +LE L + +N + +      
Sbjct: 200 LELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259

Query: 205 LERLSTLSNLKFLRLDYNSFNS 226
            +          + +      +
Sbjct: 260 RDLGGAAEGGARVVVSLTEGTA 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 54.5 bits (131), Expect = 8e-08
 Identities = 52/260 (20%), Positives = 86/260 (33%), Gaps = 41/260 (15%)

Query: 155 LGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNL 214
            G L S  +++    R      +    S   ++ +D+S + I+          LS  S L
Sbjct: 64  TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV---STLHGILSQCSKL 120

Query: 215 KFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSL 274
           + L L+    +  I ++L   S+L  L+L                       S     S 
Sbjct: 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNL-----------------------SGCSGFS- 156

Query: 275 SSWSVGINTGLDSLSNLEELDM------TNNAINNLVVPKDYRCLRKLNTLYLGGIAMID 328
                 + T L S S L+EL++      T   +   V          +  L L G     
Sbjct: 157 ---EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA----HVSETITQLNLSGYRKNL 209

Query: 329 GSKVLQSIG-SLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIA 387
               L ++    P+L  L L  +        QE      L+ L L +    + + L  + 
Sbjct: 210 QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG 269

Query: 388 SFTSLKYLSIRGCVLKGALH 407
              +LK L + G V  G L 
Sbjct: 270 EIPTLKTLQVFGIVPDGTLQ 289

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 39/202 (19%), Positives = 77/202 (38%), Gaps = 12/202 (5%)

Query: 51  WVDAADDENYSDCCQWERVECNKTTGRVIKLDLGDIKNRKNRKSERHLNASLFTPFQQLE 110
           W   A DE+            N       +L    +   +  +S      +      +++
Sbjct: 39  WYRLASDESLWQTLDLTG--KNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQ 96

Query: 111 SLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNR 170
            +DLS + I     +     LS+ + L+ L L+    ++ I ++L   S+L  L+L+   
Sbjct: 97  HMDLSNSVI---EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 153

Query: 171 LNGSIDIKGL-DSLSNLEELDMSY-NAIDNLVVPQGLERLSTLSNLKFLRLDYNSFN--- 225
                 ++ L  S S L+EL++S+        V   +  +S    +  L L     N   
Sbjct: 154 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS--ETITQLNLSGYRKNLQK 211

Query: 226 SSIFSSLGGLSSLRILSLADNR 247
           S + + +    +L  L L+D+ 
Sbjct: 212 SDLSTLVRRCPNLVHLDLSDSV 233

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.5 bits (129), Expect = 9e-08
 Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 21/161 (13%)

Query: 501 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQ-- 558
           L+L          ++F  +  L  L++ YNQL   +   +      L  L L+NN L   
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASL 98

Query: 559 -GHIFSKKFNLTNLMRLQLDGNKFIGEIPK----SLSKCYLLGGLYLSDNHLSGKIPRWL 613
              +F     LT L +L L GN+ +  +P      L+K   L  L L+ N L   IP   
Sbjct: 99  PLGVFDH---LTQLDKLYLGGNQ-LKSLPSGVFDRLTK---LKELRLNTNQLQ-SIPA-- 148

Query: 614 G---NLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNN 651
           G    L+ L+ + +  N L+      F +L  L+ + L  N
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 47/186 (25%), Positives = 73/186 (39%), Gaps = 43/186 (23%)

Query: 140 LLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNL 199
           L L S        ++  GL+ L  L+L  N+L  ++     D L+ L  L ++ N + +L
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLASL 98

Query: 200 VVPQGLERLSTLSNLKFLRLDYN---SFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKG 256
             P G+     L+ L  L L  N   S  S +F     L+ L+ L L  N+         
Sbjct: 99  --PLGV--FDHLTQLDKLYLGGNQLKSLPSGVFDR---LTKLKELRLNTNQ--------- 142

Query: 257 KQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKD-YRCLRK 315
                            L S   G     D L+NL+ L ++ N + +  VP   +  L K
Sbjct: 143 -----------------LQSIPAGA---FDKLTNLQTLSLSTNQLQS--VPHGAFDRLGK 180

Query: 316 LNTLYL 321
           L T+ L
Sbjct: 181 LQTITL 186

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 15/152 (9%)

Query: 98  LNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSN---YFNNSIFSS 154
           L+ + F    +L  L+L +N +   +   GV     L  L  L L +N        +F  
Sbjct: 50  LSDATFRGLTKLTWLNLDYNQLQT-LS-AGV--FDDLTELGTLGLANNQLASLPLGVFDH 105

Query: 155 LGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNL 214
           L   + L  L L  N+L  S+     D L+ L+EL ++ N + ++  P G      L+NL
Sbjct: 106 L---TQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSI--PAGA--FDKLTNL 157

Query: 215 KFLRLDYNSFNSSIFSSLGGLSSLRILSLADN 246
           + L L  N   S    +   L  L+ ++L  N
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 31/124 (25%), Positives = 46/124 (37%), Gaps = 32/124 (25%)

Query: 501 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIP----DRMAIGCFSLEILALSNNN 556
           L L  N F   +P   ++ K L  +D+S N+++  +       M      L  L LS N 
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMT----QLLTLILSYNR 89

Query: 557 LQ---GHIFSKKFNLTNLMRLQLDGNKFIGEIP-------KSLSKCYLLGG--------L 598
           L+      F     L +L  L L GN  I  +P        +LS   +            
Sbjct: 90  LRCIPPRTFDG---LKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ 145

Query: 599 YLSD 602
           +LSD
Sbjct: 146 WLSD 149

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 9/106 (8%)

Query: 140 LLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNL 199
           L LD N F   +   L     L ++ L++NR++ ++  +   +++ L  L +SYN +  +
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 200 VVPQGLERLSTLSNLKFLRLDYN---SFNSSIFSSLGGLSSLRILS 242
             P        L +L+ L L  N         F+ L  LS L I +
Sbjct: 94  --PPRT--FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.4 bits (125), Expect = 3e-07
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 11/103 (10%)

Query: 150 SIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLS 209
                L G  +L  L + + +    ++++ L  L  L  L +  + +    V        
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF--VAPDA--FH 77

Query: 210 TLSNLKFLRLDYNSFNS---SIFSSLGGLSSLRILSLADNRFN 249
               L  L L +N+  S        L    SL+ L L+ N  +
Sbjct: 78  FTPRLSRLNLSFNALESLSWKTVQGL----SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.7 bits (123), Expect = 7e-07
 Identities = 16/108 (14%), Positives = 35/108 (32%), Gaps = 5/108 (4%)

Query: 823 DLSC-NKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNLLLGK 880
            L C      +    +     +  L + +      +       L ++ +L +  +  L  
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRF 70

Query: 881 IPPQ-LIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 927
           + P        L+   ++ N L   +  +  Q  + +E    GNP  C
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 6e-06
 Identities = 21/98 (21%), Positives = 28/98 (28%), Gaps = 7/98 (7%)

Query: 511 SIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNL---QGHIFSKKFN 567
                    + L  L I   Q    +  R   G   L  L +  + L       F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH---F 78

Query: 568 LTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHL 605
              L RL L  N  +  +     +   L  L LS N L
Sbjct: 79  TPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 14/81 (17%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 822 IDLSCNKLTGEIPTQ-IGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGK 880
           + +   +    +  + +  L  +R L +  + L    P  F    ++  L+LS+N L   
Sbjct: 36  LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-S 94

Query: 881 IPPQLIVLNTLAVFRVANNNL 901
           +  + +   +L    ++ N L
Sbjct: 95  LSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 5e-05
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 1/92 (1%)

Query: 584 EIPKSLSKCYLLGGLYLSDNHLSGKIPRW-LGNLSALEDIIMPNNNLEGPIPIEFCQLDY 642
           +    L     L  LY+ +      +    L  L  L ++ +  + L    P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 643 LKILDLSNNTIFGTLPSCFSPAYIEEIHLSKN 674
           L  L+LS N +            ++E+ LS N
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 2e-04
 Identities = 22/123 (17%), Positives = 38/123 (30%), Gaps = 33/123 (26%)

Query: 103 FTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLR 162
               + L  L +        +E                              L GL  LR
Sbjct: 27  LPGAENLTELYIENQQHLQHLELR---------------------------DLRGLGELR 59

Query: 163 ILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYN 222
            L++  + L   +          L  L++S+NA+++L        +  LS L+ L L  N
Sbjct: 60  NLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALESL--SWKT--VQGLS-LQELVLSGN 113

Query: 223 SFN 225
             +
Sbjct: 114 PLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 9e-04
 Identities = 20/125 (16%), Positives = 39/125 (31%), Gaps = 8/125 (6%)

Query: 633 IPIEFCQLDYLKILDLSNNTIFGTLPS-CFSP-AYIEEIHLSKNKIEGRLESIIHYSPYL 690
                   + L  L + N      L          +  + + K+ +        H++P L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 691 MTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSG 750
             L+LS+N L       +  L  L  L+L+ N +        C L+ ++  +        
Sbjct: 83  SRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH-----CSCALRWLQRWEEEGLGGVP 136

Query: 751 HIPPC 755
                
Sbjct: 137 EQKLQ 141

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 47/227 (20%), Positives = 89/227 (39%), Gaps = 52/227 (22%)

Query: 142 LDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVV 201
            +    + +   +   L+S+  +   ++ +     ++G+  L N+  L +  N + ++  
Sbjct: 24  ANLKKKSVTDAVTQNELNSIDQIIANNSDIKS---VQGIQYLPNVRYLALGGNKLHDISA 80

Query: 202 PQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASS 261
                 L  L+NL +L L  N   S        L++L+ L L +N+              
Sbjct: 81  ------LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-------------- 120

Query: 262 ILRVPS--FVDLVSLSSWSVGIN--TGL-----DSLSNLEELDMTNN---AINNLVVPKD 309
           +  +P   F  L +L+  ++  N    L     D L+NL ELD++ N   ++   V  K 
Sbjct: 121 LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK- 179

Query: 310 YRCLRKLNTLYLGGIAMIDGSKVLQSI-----GSLPSLKTLYLLFTN 351
              L +L  L L           L+S+       L SL+ ++ L  N
Sbjct: 180 ---LTQLKDLRL-------YQNQLKSVPDGVFDRLTSLQYIW-LHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 49/198 (24%), Positives = 82/198 (41%), Gaps = 40/198 (20%)

Query: 447 TNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTY--LSGLMDLNLS 504
            ++  ++  N+ +       I     +  L +  N        +I     L+ L  L L+
Sbjct: 41  NSIDQIIANNSDI--KSVQGIQYLPNVRYLALGGNKLH-----DISALKELTNLTYLILT 93

Query: 505 RNAFNGSIPSS-FADMKMLKSLDISYNQLT---GEIPDRMAIGCFSLEILALSNNNLQ-- 558
            N    S+P+  F  +  LK L +  NQL      + D++     +L  L L++N LQ  
Sbjct: 94  GNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT----NLTYLNLAHNQLQSL 148

Query: 559 --GHIFSKKFNLTNLMRLQLDGNKFIGEIPK----SLSKCYLLGGLYLSDNHLSGKIPRW 612
             G +F K   LTNL  L L  N+    +P+     L++   L  L L  N L   +P  
Sbjct: 149 PKG-VFDK---LTNLTELDLSYNQL-QSLPEGVFDKLTQ---LKDLRLYQNQLKS-VPD- 198

Query: 613 LG---NLSALEDIIMPNN 627
            G    L++L+ I + +N
Sbjct: 199 -GVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 53/238 (22%), Positives = 95/238 (39%), Gaps = 61/238 (25%)

Query: 93  KSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIF 152
           K +   +A        ++ +  + ++I      + V+ +  L N+++L L  N       
Sbjct: 27  KKKSVTDAVTQNELNSIDQIIANNSDI------KSVQGIQYLPNVRYLALGGNKL----- 75

Query: 153 SSLG---GLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLS 209
             +     L++L  L L  N+L  S+     D L+NL+EL +  N + +L  P G+    
Sbjct: 76  HDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSL--PDGV--FD 130

Query: 210 TLSNLKFLRLDYN---SFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVP 266
            L+NL +L L +N   S    +F  L   ++L  L L+ N+                   
Sbjct: 131 KLTNLTYLNLAHNQLQSLPKGVFDKL---TNLTELDLSYNQ------------------- 168

Query: 267 SFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPK---DYRCLRKLNTLYL 321
                  L S   G+    D L+ L++L +  N + +  VP    D   L  L  ++L
Sbjct: 169 -------LQSLPEGV---FDKLTQLKDLRLYQNQLKS--VPDGVFDR--LTSLQYIWL 212

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.5 bits (98), Expect = 8e-04
 Identities = 58/237 (24%), Positives = 90/237 (37%), Gaps = 63/237 (26%)

Query: 523 KSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFN-LTNLMRLQLDGNKF 581
              ++    +T  +         S++ +  +N++++     +    L N+  L L GNK 
Sbjct: 22  IKANLKKKSVTDAVTQ---NELNSIDQIIANNSDIK---SVQGIQYLPNVRYLALGGNK- 74

Query: 582 IGEIP--KSLSKCYLLGGLYLSDN---HLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIE 636
           + +I   K L+    L  L L+ N    L   +   L NL  L    +  N L+      
Sbjct: 75  LHDISALKELTN---LTYLILTGNQLQSLPNGVFDKLTNLKELV---LVENQLQSLPDGV 128

Query: 637 FCQLDYLKILDLSNNTIFGTLPS-CFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDL 695
           F +L  L  L+L++N +  +LP   F         L+                 L  LDL
Sbjct: 129 FDKLTNLTYLNLAHNQL-QSLPKGVFD-------KLTN----------------LTELDL 164

Query: 696 SYNCLHGSIPTWI-DRLPQLSYLLLANNYIEGEIPIQICQLKEV------RLIDLSH 745
           SYN L  S+P  + D+L QL  L L  N           QLK V      RL  L +
Sbjct: 165 SYNQLQ-SLPEGVFDKLTQLKDLRLYQN-----------QLKSVPDGVFDRLTSLQY 209

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 29/136 (21%)

Query: 487 IPVEIGTYLSGLMDLNLSRNAFNGSIPSS--FADMKMLKSLDISYNQLTGEIPDRMAIGC 544
           IP +I  + +   +L L+ N     I S   F  +  L  L++  NQLT  I      G 
Sbjct: 23  IPRDIPLHTT---ELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGA 77

Query: 545 FSLEILALSNNNLQ---GHIFSKKFNLTNLMRLQLDGNKFIGEIP-------KSLSKCYL 594
             ++ L L  N ++     +F     L  L  L L  N+ I  +         SL+   L
Sbjct: 78  SHIQELQLGENKIKEISNKMFLG---LHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNL 133

Query: 595 LGG--------LYLSD 602
                       + ++
Sbjct: 134 ASNPFNCNCHLAWFAE 149

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 20/115 (17%)

Query: 523 KSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQG---HIFSKKFNLTNLMRLQLDGN 579
             L ++ N+L     D +      L  L L  N L G   + F      +++  LQL  N
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG---ASHIQELQLGEN 88

Query: 580 KFIGEIPK----SLSKCYLLGGLYLSDNHLSGKIPRWLG---NLSALEDIIMPNN 627
           K I EI       L +   L  L L DN +S  +    G   +L++L  + + +N
Sbjct: 89  K-IKEISNKMFLGLHQ---LKTLNLYDNQISC-VMP--GSFEHLNSLTSLNLASN 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 23/138 (16%)

Query: 501 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLT---GEIPDRMAIGCFSLEILALSNNNL 557
           L+L  N+        F ++  L  L +  N+L      + +++     SL  L LS N L
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT----SLTYLNLSTNQL 88

Query: 558 QG---HIFSKKFNLTNLMRLQLDGNKFIGEIPK----SLSKCYLLGGLYLSDNHLSGKIP 610
           Q     +F K   LT L  L L+ N+ +  +P      L++   L  L L  N L   +P
Sbjct: 89  QSLPNGVFDK---LTQLKELALNTNQ-LQSLPDGVFDKLTQ---LKDLRLYQNQLKS-VP 140

Query: 611 R-WLGNLSALEDIIMPNN 627
                 L++L+ I + +N
Sbjct: 141 DGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 11/112 (9%)

Query: 138 KFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAID 197
            +L L++N   +        L+SL  L L  N+L  S+     + L++L  L++S N + 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 198 NLVVPQGLERLSTLSNLKFLRLDYNSFNS---SIFSSLGGLSSLRILSLADN 246
           +L  P G+     L+ LK L L+ N   S    +F  L     L+ L L  N
Sbjct: 90  SL--PNGV--FDKLTQLKELALNTNQLQSLPDGVFDKLT---QLKDLRLYQN 134

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 22/137 (16%), Positives = 50/137 (36%), Gaps = 13/137 (9%)

Query: 89  RKNRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLL-DSNYF 147
           ++ +K   HL  +      +++++D + + I     + G + +  L  ++ + L   +Y 
Sbjct: 44  QRWQKDYNHLP-TGPLDKYKIQAIDATDSCI----MSIGFDHMEGLQYVEKIRLCKCHYI 98

Query: 148 NNSIFSSLGGLS----SLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQ 203
            +     L  L     S+  + +          I  L    NL+ L +S       V  +
Sbjct: 99  EDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL---PGVKEK 155

Query: 204 GLERLSTLSNLKFLRLD 220
                +  ++L  L L 
Sbjct: 156 EKIVQAFKTSLPSLELK 172

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 9/112 (8%)

Query: 116 WNNIAGCVENEGVERLSRLNNLKFLLLDSNY--FNNSIFSSLGGLSSLRILSLADNRLNG 173
           ++      ++        L+  K   +D+      +  F  + GL  +  + L       
Sbjct: 40  YHGQQRWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH--- 96

Query: 174 SIDIKGLDSLSNLEELDMSYNAID----NLVVPQGLERLSTLSNLKFLRLDY 221
            I+   L+ LS LE L  S   ++      V  +G+  L    NLK+L L  
Sbjct: 97  YIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSD 148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1021
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-20
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.004
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	8e-07
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	6e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 90.6 bits (223), Expect = 3e-20
 Identities = 62/262 (23%), Positives = 98/262 (37%), Gaps = 5/262 (1%)

Query: 498 LMDLNLSRNAFNG--SIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNN 555
           + +L+LS         IPSS A++  L  L I                   L  L +++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 556 NLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGN 615
           N+ G I      +  L+ L    N   G +P S+S    L G+    N +SG IP   G+
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 616 LSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNK 675
            S L   +  + N              L  +DLS N + G     F      +       
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 676 IEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQL 735
                   +  S  L  LDL  N ++G++P  + +L  L  L ++ N + GEIP Q   L
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNL 290

Query: 736 KEVRLIDLSHNNL--SGHIPPC 755
           +   +   ++N       +P C
Sbjct: 291 QRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 87.1 bits (214), Expect = 4e-19
 Identities = 56/273 (20%), Positives = 100/273 (36%), Gaps = 15/273 (5%)

Query: 614 GNLSALEDIIMPNNNLEG--PIPIEFCQLDYLKILDLSN--NTIFGTLPSCFSPAYIEEI 669
                + ++ +   NL    PIP     L YL  L +    N +    P+      +  +
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 670 HLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIP 729
           +++   + G +   +     L+TLD SYN L G++P  I  LP L  +    N I G IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 730 IQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAP 789
                           + L   +               A   ++      +     +   
Sbjct: 167 DSYGS----------FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL 216

Query: 790 NGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLS 849
            GS    ++             +  +  +++G+DL  N++ G +P  +  L  + +LN+S
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 850 HNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIP 882
            NNL G IP    NL++ +    + N  L   P
Sbjct: 277 FNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 81.3 bits (199), Expect = 4e-17
 Identities = 56/244 (22%), Positives = 82/244 (33%), Gaps = 2/244 (0%)

Query: 522 LKSLDISYNQLTGEIPDRMAIGCFS-LEILALSNN-NLQGHIFSKKFNLTNLMRLQLDGN 579
           + +LD+S   L    P   ++     L  L +    NL G I      LT L  L +   
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 580 KFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQ 639
              G IP  LS+   L  L  S N LSG +P  + +L  L  I    N + G IP  +  
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 640 LDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNC 699
              L      +                         +     S++  S            
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 700 LHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNT 759
                   +     L+ L L NN I G +P  + QLK +  +++S NNL G IP      
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291

Query: 760 ALNE 763
             + 
Sbjct: 292 RFDV 295

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 72.9 bits (177), Expect = 3e-14
 Identities = 57/262 (21%), Positives = 91/262 (34%), Gaps = 26/262 (9%)

Query: 424 LKNVDLSHLNLSGKFP-NWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNF 482
           + N+DLS LNL   +P    + N   L  L +   +       P  +          T+ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 483 FRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAI 542
                  +  + +  L+ L+ S NA +G++P S + +  L  +    N+++G IPD    
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 543 GCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCY--------- 593
                  + +S N L G I     NL                     S            
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 594 -------------LLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQL 640
                         L GL L +N + G +P+ L  L  L  + +  NNL G IP +   L
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNL 290

Query: 641 DYLKILDLSNNTIF--GTLPSC 660
               +   +NN       LP+C
Sbjct: 291 QRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.5 bits (132), Expect = 1e-08
 Identities = 65/350 (18%), Positives = 114/350 (32%), Gaps = 58/350 (16%)

Query: 27  CLEQERSALLQLKHFFNDDQRLQNWVDAADDENYSDCCQ--WERVECNKTTGRVIKLDLG 84
           C  Q++ ALLQ+K    +   L +W+        +DCC   W  V C+  T         
Sbjct: 3   CNPQDKQALLQIKKDLGNPTTLSSWLPT------TDCCNRTWLGVLCDTDTQTY------ 50

Query: 85  DIKNRKNRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDS 144
                                  ++ +LDLS  N+           L+ L  L FL +  
Sbjct: 51  -----------------------RVNNLDLSGLNLPKPYPIP--SSLANLPYLNFLYIGG 85

Query: 145 NY-FNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQ 203
                  I  ++  L+ L  L +    ++G+I         +  +  ++ +   N +   
Sbjct: 86  INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-----LSQIKTLVTLDFSYNALSGT 140

Query: 204 GLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRI-LSLADNRFNGSIDIKGKQASSI 262
               +S+L NL  +  D N  + +I  S G  S L   ++++ NR  G I          
Sbjct: 141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN---- 196

Query: 263 LRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLG 322
                        S ++          + +     + A N+L        L K       
Sbjct: 197 -----LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDL 251

Query: 323 GIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLL 372
               I G+ + Q +  L  L +L + F N  G I   +  N    +    
Sbjct: 252 RNNRIYGT-LPQGLTQLKFLHSLNVSFNNLCGEI--PQGGNLQRFDVSAY 298

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.0 bits (102), Expect = 6e-05
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 141 LLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYN 194
            L +N    ++   L  L  L  L+++ N L G   I    +L   +    + N
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE--IPQGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 24/151 (15%), Positives = 44/151 (29%), Gaps = 5/151 (3%)

Query: 21  GWWIEGCLEQERSALLQLKHFFNDDQRLQNWVDAADDENYSDCCQWERVECNKTTGRVIK 80
           G  I G +     +  +L       +            N +           +    V+ 
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLF 217

Query: 81  LDLGDIKNRKNRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFL 140
               + +     K+    +       + L  LDL  N I G +       L++L  L  L
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG----LTQLKFLHSL 273

Query: 141 LLDSNYFNNSIFSSLGGLSSLRILSLADNRL 171
            +  N     I    G L    + + A+N+ 
Sbjct: 274 NVSFNNLCGEI-PQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.2 bits (87), Expect = 0.004
 Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 13/67 (19%)

Query: 219 LDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWS 278
           L  N    ++   L  L  L  L+++ N   G I             P   +L      +
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-------------PQGGNLQRFDVSA 297

Query: 279 VGINTGL 285
              N  L
Sbjct: 298 YANNKCL 304

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 84.7 bits (208), Expect = 8e-18
 Identities = 66/386 (17%), Positives = 116/386 (30%), Gaps = 41/386 (10%)

Query: 286 DSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTL 345
            +L+   +  +    + + V   D   L ++ TL         G K +  +  L +L  +
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTD---LDQVTTLQADR----LGIKSIDGVEYLNNLTQI 71

Query: 346 YLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGA 405
                        + L    ++       +D+     L ++   T           LK  
Sbjct: 72  NFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 131

Query: 406 LHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRM 465
            +          +     L  +        G     L           L  +S   S   
Sbjct: 132 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS 191

Query: 466 PIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSL 525
            +     L +L  + N      P+ I T L    +L+L+ N        + A +  L  L
Sbjct: 192 VLAKLTNLESLIATNNQISDITPLGILTNLD---ELSLNGNQLKD--IGTLASLTNLTDL 246

Query: 526 DISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHI--------------------FSKK 565
           D++ NQ++   P     G   L  L L  N +                         S  
Sbjct: 247 DLANNQISNLAPLS---GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 303

Query: 566 FNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMP 625
            NL NL  L L  N      P  +S    L  L+ ++N +S      L NL+ +  +   
Sbjct: 304 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAG 359

Query: 626 NNNLEGPIPIEFCQLDYLKILDLSNN 651
           +N +    P     L  +  L L++ 
Sbjct: 360 HNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.8 bits (198), Expect = 1e-16
 Identities = 55/406 (13%), Positives = 118/406 (29%), Gaps = 44/406 (10%)

Query: 495 LSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFS-LEILALS 553
           L+  M   L +     ++  S  D+  + +L      +         +   + L  +  S
Sbjct: 21  LAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK----SIDGVEYLNNLTQINFS 74

Query: 554 NNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWL 613
           NN L          L NL +L             +              N+    I    
Sbjct: 75  NNQLTDIT-----PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129

Query: 614 GNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSK 673
              +     +  N   +         L  L   +   +       +      I    +S 
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189

Query: 674 NKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQIC 733
             +  +L         L +L  + N +    P  I     L  L L  N ++      + 
Sbjct: 190 ISVLAKL-------TNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLA 238

Query: 734 QLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSP 793
            L  +  +DL++N +S   P   +                 +        + +++P    
Sbjct: 239 SLTNLTDLDLANNQISNLAPLSGLT--------------KLTELKLGANQISNISPLAGL 284

Query: 794 IGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNL 853
                      +          L +++ + L  N ++   P  +  LT+++ L  ++N +
Sbjct: 285 TALTNLELNENQLEDISPI-SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV 341

Query: 854 TGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANN 899
           +    ++ +NL  I  L   +N +    P  L  L  +    + + 
Sbjct: 342 SD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.0 bits (175), Expect = 9e-14
 Identities = 66/412 (16%), Positives = 130/412 (31%), Gaps = 46/412 (11%)

Query: 149 NSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERL 208
           N IF+    L+      L    +  ++       L  +  L      I ++      + +
Sbjct: 13  NQIFTD-TALAEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGIKSI------DGV 62

Query: 209 STLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSF 268
             L+NL  +    N         L  L+ L  + + +N+      +      + L + + 
Sbjct: 63  EYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 120

Query: 269 VDLVSLSSWSVGINTGLDSLSN-LEELDMTNNAINNLVVPKDYRCLRKLN----TLYLGG 323
                    ++     L+  SN + ++   +   +   +    +          T     
Sbjct: 121 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERL 180

Query: 324 IAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLL 383
               +    +  +  L +L++L               L   TNL+EL L  + L     +
Sbjct: 181 DISSNKVSDISVLAKLTNLESLIATNNQISDIT---PLGILTNLDELSLNGNQLKD---I 234

Query: 384 QSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLV 443
            ++AS T+L  L +    +               L     L  + L    +S   P   +
Sbjct: 235 GTLASLTNLTDLDLANNQISN----------LAPLSGLTKLTELKLGANQISNISPLAGL 284

Query: 444 ENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNL 503
              TNL+      N        PI + + L  L +  N      PV     L+ L  L  
Sbjct: 285 TALTNLE-----LNENQLEDISPISNLKNLTYLTLYFNNISDISPVS---SLTKLQRLFF 336

Query: 504 SRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNN 555
           + N  +    SS A++  +  L   +NQ++   P         +  L L++ 
Sbjct: 337 ANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA---NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 67.7 bits (164), Expect = 2e-12
 Identities = 60/399 (15%), Positives = 130/399 (32%), Gaps = 34/399 (8%)

Query: 181 DSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRI 240
            +L+   +  +    + + V        + L  +  L+ D     S     +  L++L  
Sbjct: 19  TALAEKMKTVLGKTNVTDTV------SQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQ 70

Query: 241 LSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNA 300
           ++ ++N+      +K       +   +   +  ++  +   N    +L N +  D+    
Sbjct: 71  INFSNNQLTDITPLKNLTKLVDIL-MNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129

Query: 301 INNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQE 360
               +   +       +   L G+  +        +  L  L  L  L      +    +
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189

Query: 361 LHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYH 420
           +     L  L  + +  +    +  +   T+L  LS+ G  LK              L  
Sbjct: 190 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD----------IGTLAS 239

Query: 421 QHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVST 480
             +L ++DL++  +S   P   +   T L  L L  N +       I     L  L    
Sbjct: 240 LTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISN-----ISPLAGLTALTNLE 291

Query: 481 NFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRM 540
                   +   + L  L  L L  N  +   P   + +  L+ L  + N+++      +
Sbjct: 292 LNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSL 347

Query: 541 AIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGN 579
           A    ++  L+  +N +         NLT + +L L+  
Sbjct: 348 A-NLTNINWLSAGHNQISDLTPLA--NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.3 bits (150), Expect = 1e-10
 Identities = 44/214 (20%), Positives = 76/214 (35%), Gaps = 66/214 (30%)

Query: 106 FQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILS 165
              L+ L L+ N +      + +  L+ L NL  L L +N  +N     L GL+ L  L 
Sbjct: 218 LTNLDELSLNGNQL------KDIGTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELK 269

Query: 166 LADNRLNGSIDIKGLDS-------------------LSNLEELDMSYNAIDNLVVPQGLE 206
           L  N+++    + GL +                   L NL  L + +N I        + 
Sbjct: 270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI------SDIS 323

Query: 207 RLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVP 266
            +S+L+ L+ L    N    S  SSL  L+++  LS   N+ +                 
Sbjct: 324 PVSSLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQISDLTP------------- 368

Query: 267 SFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNA 300
                             L +L+ + +L + + A
Sbjct: 369 ------------------LANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.3 bits (137), Expect = 5e-09
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 11/93 (11%)

Query: 103 FTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLR 162
            +  + L  L L +NNI        +  +S L  L+ L   +N    S  SSL  L+++ 
Sbjct: 303 ISNLKNLTYLTLYFNNI------SDISPVSSLTKLQRLFFANNKV--SDVSSLANLTNIN 354

Query: 163 ILSLADNRLNGSIDIKGLDSLSNLEELDMSYNA 195
            LS   N+++       L +L+ + +L ++  A
Sbjct: 355 WLSAGHNQISDLTP---LANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.3 bits (124), Expect = 2e-07
 Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 27/136 (19%)

Query: 103 FTPFQQLESLDLSWNNIAGCVENEGVERLS----------------RLNNLKFLLLDSNY 146
            +   +L  L L  N I+      G+  L+                 L NL +L L  N 
Sbjct: 259 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 318

Query: 147 FNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLE 206
            ++     +  L+ L+ L  A+N+++    +  L +L+N+  L   +N I        L 
Sbjct: 319 ISDIS--PVSSLTKLQRLFFANNKVSD---VSSLANLTNINWLSAGHNQI------SDLT 367

Query: 207 RLSTLSNLKFLRLDYN 222
            L+ L+ +  L L+  
Sbjct: 368 PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.2 bits (121), Expect = 4e-07
 Identities = 78/406 (19%), Positives = 139/406 (34%), Gaps = 68/406 (16%)

Query: 106 FQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILS 165
             Q+ +L      I      + ++ +  LNNL  +   +N                    
Sbjct: 43  LDQVTTLQADRLGI------KSIDGVEYLNNLTQINFSNNQLT----------------- 79

Query: 166 LADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFN 225
                     DI  L +L+ L ++ M+ N I ++     L  L+ L+       D +   
Sbjct: 80  ----------DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129

Query: 226 SSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQA----SSILRVPSFVDLVSLSSWSVGI 281
           +    +   LSS  I  ++      S+              L   + ++ + +SS  V  
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189

Query: 282 NTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPS 341
            + L  L+NLE L  TNN I+++        L  L+ L L G  + D    + ++ SL +
Sbjct: 190 ISVLAKLTNLESLIATNNQISDIT---PLGILTNLDELSLNGNQLKD----IGTLASLTN 242

Query: 342 LKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCV 401
           L  L L             L   T L EL L  + +     L  + + T+L+    +   
Sbjct: 243 LTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE- 298

Query: 402 LKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFG 461
                           + +  +L  + L   N+S   P   V + T L+ L  ANN +  
Sbjct: 299 ------------DISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKVSD 343

Query: 462 SFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNA 507
                + +   +  L    N      P+     L+ +  L L+  A
Sbjct: 344 V--SSLANLTNINWLSAGHNQISDLTPLA---NLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 0.002
 Identities = 38/223 (17%), Positives = 77/223 (34%), Gaps = 16/223 (7%)

Query: 690 LMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLS 749
           + TL      +  SI   ++ L  L+ +  +NN +    P++       +L+D+  NN  
Sbjct: 46  VTTLQADRLGIK-SI-DGVEYLNNLTQINFSNNQLTDITPLKNLT----KLVDILMNNNQ 99

Query: 750 GHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSY 809
                 L N     G       I+      +   L  +  + + I +   +   T     
Sbjct: 100 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 159

Query: 810 YYQGRILMSMSGIDLSCNKLTGEIP------TQIGYLTRIRALNLSHNNLTGTIPTTFSN 863
            +  ++       +L+  +            + +  LT + +L  ++N ++   P     
Sbjct: 160 SFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT 219

Query: 864 LKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIP 906
              ++ L L+ N L       L  L  L    +ANN +S   P
Sbjct: 220 --NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 258

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.6 bits (200), Expect = 3e-17
 Identities = 50/268 (18%), Positives = 98/268 (36%), Gaps = 12/268 (4%)

Query: 464 RMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLK 523
           ++P       A LD+  N        +    L  L  L L  N  +   P +FA +  L+
Sbjct: 24  KVPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 524 SLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIG 583
            L +S NQL  E+P++M      L +       ++  +F+   N   ++ L  +  K  G
Sbjct: 83  RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFN-GLNQMIVVELGTNPLKSSG 140

Query: 584 EIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYL 643
               +      L  + ++D +++  IP+  G   +L ++ +  N +          L+ L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 644 KILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHG- 702
             L LS N+I        +           N    ++   +    Y+  + L  N +   
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 257

Query: 703 -----SIPTWIDRLPQLSYLLLANNYIE 725
                  P +  +    S + L +N ++
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.4 bits (176), Expect = 3e-14
 Identities = 47/312 (15%), Positives = 89/312 (28%), Gaps = 45/312 (14%)

Query: 569 TNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNN 628
            +   L L  NK              L  L L +N +S   P     L  LE + +  N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 629 LEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSP 688
           L+         L  L++ +     +  ++ +  +   + E+  +  K  G          
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 689 YLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNL 748
            L  + ++   +  +IP  +   P L+ L L  N I       +  L  +  + LS N++
Sbjct: 151 KLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 749 SGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMS 808
           S      L NT      H     +                                  + 
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKL----------------------------------VK 233

Query: 809 YYYQGRILMSMSGIDLSCNKLTG------EIPTQIGYLTRIRALNLSHNNLTGT--IPTT 860
                     +  + L  N ++         P           ++L  N +      P+T
Sbjct: 234 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 293

Query: 861 FSNLKQIESLDL 872
           F  +    ++ L
Sbjct: 294 FRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.7 bits (169), Expect = 2e-13
 Identities = 52/228 (22%), Positives = 83/228 (36%), Gaps = 26/228 (11%)

Query: 546 SLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHL 605
              +L L NN +         NL NL  L L  NK     P + +    L  LYLS N L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 606 SGKIPRWLGNLSALE-----------------------DIIMPNNNLEGPIPIEFCQLDY 642
                +    L  L                        ++        G     F  +  
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 643 LKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHG 702
           L  + +++  I  T+P    P+ + E+HL  NKI     + +     L  L LS+N +  
Sbjct: 152 LSYIRIADTNI-TTIPQGLPPS-LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209

Query: 703 SIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSG 750
                +   P L  L L NN +  ++P  +   K ++++ L +NN+S 
Sbjct: 210 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.1 bits (139), Expect = 1e-09
 Identities = 50/275 (18%), Positives = 93/275 (33%), Gaps = 25/275 (9%)

Query: 289 SNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLL 348
            +   LD+ NN I  +    D++ L+ L+TL L    +   S    +   L  L+ LYL 
Sbjct: 31  PDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISP--GAFAPLVKLERLYLS 87

Query: 349 FTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHG 408
               K      EL          L   +  ++++ +S+        L+    V  G    
Sbjct: 88  KNQLK------ELPEKMPKTLQELRVHENEITKVRKSV-----FNGLNQMIVVELGTNPL 136

Query: 409 QDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIH 468
           +  G           L  + ++  N++            +L  L L  N +       + 
Sbjct: 137 KSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP----PSLTELHLDGNKITKVDAASLK 192

Query: 469 SHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDIS 528
               LA L +S N                L +L+L+ N     +P   AD K ++ + + 
Sbjct: 193 GLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH 250

Query: 529 YNQLTGEIPDRMAI-----GCFSLEILALSNNNLQ 558
            N ++    +            S   ++L +N +Q
Sbjct: 251 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.1 bits (139), Expect = 2e-09
 Identities = 48/270 (17%), Positives = 91/270 (33%), Gaps = 14/270 (5%)

Query: 663 PAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANN 722
           P     + L  NKI    +        L TL L  N +    P     L +L  L L+ N
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 723 YIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTY 782
            ++         L+E+R+ +     +   +   L    + E     +   SS  ++ +  
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL--KSSGIENGAFQ 147

Query: 783 VLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTR 842
            +  +           +               +  S++ + L  NK+T      +  L  
Sbjct: 148 GMKKL-----------SYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNN 196

Query: 843 IRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLS 902
           +  L LS N+++     + +N   +  L L+ N  L K+P  L     + V  + NNN+S
Sbjct: 197 LAKLGLSFNSISAVDNGSLANTPHLRELHLN-NNKLVKVPGGLADHKYIQVVYLHNNNIS 255

Query: 903 GKIPDRVAQFSTFEEDSYEGNPFLCGLPLS 932
               +         + +      L   P+ 
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.7 bits (117), Expect = 9e-07
 Identities = 42/278 (15%), Positives = 77/278 (27%), Gaps = 44/278 (15%)

Query: 109 LESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLAD 168
              LDL  N I    + +       L NL  L+L +N  +     +   L  L  L L+ 
Sbjct: 33  TALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 169 NRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERL----------------STLS 212
           N+L   +  K   +L  L   +     +   V     + +                    
Sbjct: 89  NQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 213 NLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSI------------------DI 254
            +K L     +  +      G   SL  L L  N+                        I
Sbjct: 148 GMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 255 KGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNL-----VVPKD 309
                 S+   P   +L   ++  V +  GL     ++ + + NN I+ +       P  
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 267

Query: 310 YRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYL 347
                  + + L    +        +   +     + L
Sbjct: 268 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.5 bits (114), Expect = 2e-06
 Identities = 42/277 (15%), Positives = 92/277 (33%), Gaps = 24/277 (8%)

Query: 184 SNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSL 243
            +   LD+  N I  +           L NL  L L  N  +     +   L  L  L L
Sbjct: 31  PDTALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 244 ADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINN 303
           + N+     +   K    +            +  +    +  + L+ +  +++  N + +
Sbjct: 87  SKNQLKELPEKMPKTLQELRV--------HENEITKVRKSVFNGLNQMIVVELGTNPLKS 138

Query: 304 L-VVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELH 362
             +    ++ ++KL+ + +    +    +     G  PSL  L+L             L 
Sbjct: 139 SGIENGAFQGMKKLSYIRIADTNITTIPQ-----GLPPSLTELHLDGNKITKVD-AASLK 192

Query: 363 NFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQH 422
              NL + L +  +   +    S+A+   L+ L +    L     G     + + +    
Sbjct: 193 GLNNLAK-LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVV---- 247

Query: 423 DLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSL 459
            L N ++S +  +   P        +   + L +N +
Sbjct: 248 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.2 bits (196), Expect = 5e-17
 Identities = 50/266 (18%), Positives = 76/266 (28%), Gaps = 8/266 (3%)

Query: 486 HIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCF 545
            +PV I         + L  N  +    +SF   + L  L +  N L             
Sbjct: 25  AVPVGIPAASQ---RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 546 SLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHL 605
             ++    N  L+    +    L  L  L LD        P        L  LYL DN L
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141

Query: 606 SGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAY 665
                    +L  L  + +  N +       F  L  L  L L  N +    P  F    
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 666 IEEIHL-SKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYI 724
                    N +       +     L  L L+ N               L     +++ +
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEV 260

Query: 725 EGEIPIQICQLKEVRLIDLSHNNLSG 750
              +P    +L    L  L+ N+L G
Sbjct: 261 PCSLPQ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (179), Expect = 1e-14
 Identities = 55/257 (21%), Positives = 87/257 (33%), Gaps = 5/257 (1%)

Query: 422 HDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTN 481
              + + L    +S            NL  L L +N L             L  LD+S N
Sbjct: 32  AASQRIFLHGNRISHVPAASF-RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 482 FFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMA 541
                +       L  L  L+L R       P  F  +  L+ L +  N L     D   
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD-TF 149

Query: 542 IGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLS 601
               +L  L L  N +          L +L RL L  N+     P +      L  LYL 
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 602 DNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCF 661
            N+LS      L  L AL+ + + +N              +L+    S++ +  +LP   
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQKFRGSSSEVPCSLPQRL 268

Query: 662 SPAYIEEIHLSKNKIEG 678
           +   ++   L+ N ++G
Sbjct: 269 AGRDLKR--LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (162), Expect = 2e-12
 Identities = 44/303 (14%), Positives = 87/303 (28%), Gaps = 41/303 (13%)

Query: 579 NKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFC 638
            + +  +P  +        ++L  N +S            L  + + +N L       F 
Sbjct: 20  QQGLQAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT 77

Query: 639 QLDYLKILDLSNNTIFGTL-PSCFSP-AYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLS 696
            L  L+ LDLS+N    ++ P+ F     +  +HL +  ++     +      L  L L 
Sbjct: 78  GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137

Query: 697 YNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCL 756
            N L          L  L++L L  N I          L  +  + L  N ++   P   
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 757 VNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRIL 816
            +       +                                       +         L
Sbjct: 198 RDLGRLMTLYL---------------------------------FANNLSALPTEALAPL 224

Query: 817 MSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL 876
            ++  + L+ N    +          ++    S + +  ++P     L   +   L+ N 
Sbjct: 225 RALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLP---QRLAGRDLKRLAAND 280

Query: 877 LLG 879
           L G
Sbjct: 281 LQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 1e-10
 Identities = 42/189 (22%), Positives = 63/189 (33%), Gaps = 2/189 (1%)

Query: 569 TNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNN 628
               R+ L GN+       S   C  L  L+L  N L+         L+ LE + + +N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 629 LEGPI-PIEFCQLDYLKILDLSNNTIFGTLPSCFSPAY-IEEIHLSKNKIEGRLESIIHY 686
               + P  F  L  L  L L    +    P  F     ++ ++L  N ++   +     
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 687 SPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHN 746
              L  L L  N +          L  L  LLL  N +    P     L  +  + L  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 747 NLSGHIPPC 755
           NLS      
Sbjct: 212 NLSALPTEA 220

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 8e-09
 Identities = 46/243 (18%), Positives = 77/243 (31%), Gaps = 6/243 (2%)

Query: 523 KSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFI 582
            +       L   +P  +     + + + L  N +     +      NL  L L  N   
Sbjct: 14  VTTSCPQQGLQ-AVPVGIPA---ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA 69

Query: 583 GEIPKSLSKCYLLGGLYLSDNHLSGKI-PRWLGNLSALEDIIMPNNNLEGPIPIEFCQLD 641
                + +   LL  L LSDN     + P     L  L  + +    L+   P  F  L 
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 642 YLKILDLSNNTIFGTLPSCF-SPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCL 700
            L+ L L +N +       F     +  + L  N+I    E        L  L L  N +
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 701 HGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTA 760
               P     L +L  L L  N +       +  L+ ++ + L+ N          +   
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW 249

Query: 761 LNE 763
           L +
Sbjct: 250 LQK 252

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 4e-08
 Identities = 43/246 (17%), Positives = 73/246 (29%), Gaps = 11/246 (4%)

Query: 686 YSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSH 745
           Y+   +T       L  ++P  I        + L  N I           + + ++ L  
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 746 NNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTK 805
           N L+          AL E    +      S D A+ + L  +            +     
Sbjct: 66  NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL--------HTLHLDRCGL 117

Query: 806 NMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLK 865
                   R L ++  + L  N L          L  +  L L  N ++      F  L 
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177

Query: 866 QIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPF 925
            ++ L L  N +    P     L  L    +  NNLS    + +A     +      NP+
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

Query: 926 LCGLPL 931
           +C    
Sbjct: 238 VCDCRA 243

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 53/310 (17%), Positives = 93/310 (30%), Gaps = 52/310 (16%)

Query: 201 VPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQAS 260
           VP G+      +  + + L  N  +    +S     +L IL L  N              
Sbjct: 26  VPVGI-----PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-------------- 66

Query: 261 SILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLY 320
                            +         L+ LE+LD+++NA    V P  +  L +L+TL+
Sbjct: 67  ---------------VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111

Query: 321 LGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVS 380
           L    + +   +   +    +      L  N    + +    +  NL  L L  + +  S
Sbjct: 112 LDRCGLQE---LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-S 167

Query: 381 QLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPN 440
              ++     SL  L +           +     P        L  + L   N     P 
Sbjct: 168 VPERAFRGLHSLDRLLLHQN--------RVAHVHPHAFRDLGRLMTLYLFA-NNLSALPT 218

Query: 441 WLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMD 500
             +     L+ L L +N      R        L     S++     +P      L+G   
Sbjct: 219 EALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQR----LAGRDL 273

Query: 501 LNLSRNAFNG 510
             L+ N   G
Sbjct: 274 KRLAANDLQG 283

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (141), Expect = 7e-10
 Identities = 40/285 (14%), Positives = 86/285 (30%), Gaps = 21/285 (7%)

Query: 475 TLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTG 534
           TLD++       +   +     G++     R+  +  +   F+  + ++ +D+S + +  
Sbjct: 4   TLDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEV 60

Query: 535 EIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYL 594
                +   C  L+ L+L    L   I +     +NL+RL L G     E          
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 595 LGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIF 654
                L+ +       + +    A     +   NL G             +    N    
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 655 GTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSY-NCLHGSIPTWIDRLPQ 713
               S                ++           YL  L LS    +       +  +P 
Sbjct: 181 DLSDSV--------------MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226

Query: 714 LSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVN 758
           L  L +     +G + +    L  ++   ++ ++ +    P + N
Sbjct: 227 LKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 4e-09
 Identities = 39/271 (14%), Positives = 81/271 (29%), Gaps = 6/271 (2%)

Query: 626 NNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGR-LESII 684
             NL   +         +       + +   L   FSP  ++ + LS + IE   L  I+
Sbjct: 9   GKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL 67

Query: 685 HYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLS 744
                L  L L    L   I   + +   L  L L+      E  +Q       RL +L+
Sbjct: 68  SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 127

Query: 745 HNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTT 804
            +         +     +         +S    +     L ++      +   +      
Sbjct: 128 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 187

Query: 805 KNMSYYYQGRILMSMSGIDLS-CNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSN 863
                + +   L  +  + LS C  +  E   ++G +  ++ L +      GT+      
Sbjct: 188 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEA 247

Query: 864 LKQIESLDLSYNLLLGKIPPQLIVLNTLAVF 894
           L     L ++ +       P +       ++
Sbjct: 248 LPH---LQINCSHFTTIARPTIGNKKNQEIW 275

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 41/255 (16%), Positives = 79/255 (30%), Gaps = 27/255 (10%)

Query: 153 SSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLS 212
              G L S  +++    R      +    S   ++ +D+S + I+   +   L + S   
Sbjct: 15  DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCS--- 71

Query: 213 NLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLV 272
            L+ L L+    +  I ++L   S+L  L+L+                            
Sbjct: 72  KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE--------------------- 110

Query: 273 SLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKV 332
                   + +    L  L      +    ++ V   +           G    +  S +
Sbjct: 111 ---FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 167

Query: 333 LQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSL 392
              +   P+L  L L  +        QE      L+ L L +    + + L  +    +L
Sbjct: 168 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 227

Query: 393 KYLSIRGCVLKGALH 407
           K L + G V  G L 
Sbjct: 228 KTLQVFGIVPDGTLQ 242

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 4e-05
 Identities = 36/241 (14%), Positives = 81/241 (33%), Gaps = 14/241 (5%)

Query: 111 SLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNR 170
           +LDL+  N+   V    + +      +       ++ +  +         ++ + L+++ 
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQ-----GVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSV 57

Query: 171 LNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFS 230
           +  S     L   S L+ L +    + +      +  L+  SNL  L L   S  S    
Sbjct: 58  IEVSTLHGILSQCSKLQNLSLEGLRLSD----PIVNTLAKNSNLVRLNLSGCSGFSEFAL 113

Query: 231 SLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSN 290
                S  R+  L  +      +   + A + +        +S    ++  +     +  
Sbjct: 114 QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 173

Query: 291 LEELDMTNNAINNLVVPKDYRCL---RKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYL 347
              L   + + + ++    ++       L  L L     I     L  +G +P+LKTL +
Sbjct: 174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE-TLLELGEIPTLKTLQV 232

Query: 348 L 348
            
Sbjct: 233 F 233

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 16/107 (14%), Positives = 41/107 (38%), Gaps = 3/107 (2%)

Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
           +DL+   L  ++  ++     + A     + +   +   FS  + ++ +DLS +++    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62

Query: 882 PPQLIV-LNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 927
              ++   + L    +    LS  I + +A+ S     +  G     
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS 109

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (131), Expect = 2e-08
 Identities = 45/443 (10%), Positives = 101/443 (22%), Gaps = 30/443 (6%)

Query: 473 LATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNG----SIPSSFADMKMLKSLDIS 528
           + +LD+           E+   L     + L            I S+      L  L++ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 529 YNQLTGE----IPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGE 584
            N+L       +   +      ++ L+L N  L G       +    +    + +     
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 585 IPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLK 644
           +  +  +    G L         ++     + ++ E +            +     D  +
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 645 ILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSI 704
                        P       +E   ++ +        +   +        S       +
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 705 PTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEG 764
                 L   S  L      E  I  + C      L               L +      
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 765 YHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSG--- 821
               + P              + A            +F  +      +            
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 822 ----------IDLSCNKLTGE----IPTQIGYLTRIRALNLSHNNLTGTIPTTFS----- 862
                     + L+   ++      +   +     +R L+LS+N L              
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 863 NLKQIESLDLSYNLLLGKIPPQL 885
               +E L L       ++  +L
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 2e-06
 Identities = 53/478 (11%), Positives = 110/478 (23%), Gaps = 45/478 (9%)

Query: 290 NLEELDMTNNAINNLVVPKDYRCLRKLNTLYLG--GIAMIDGSKVLQSIGSLPSLKTLYL 347
           +++ LD+    +++    +    L++   + L   G+       +  ++   P+L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 348 LFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALH 407
                    V+                    V Q LQ+      ++ LS         L 
Sbjct: 63  RSNELGDVGVH-------------------CVLQGLQT--PSCKIQKLS---------LQ 92

Query: 408 GQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPI 467
                     +          L  L+LS                L               
Sbjct: 93  NCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS 152

Query: 468 HSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDI 527
            S      L            + +                    +  S   ++ LK    
Sbjct: 153 LSAASCEPLASVLRAKPDFKELTVSNN----DINEAGVRVLCQGLKDSPCQLEALKLESC 208

Query: 528 SYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPK 587
                       +     SL  LAL +N L     ++          +L           
Sbjct: 209 GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 268

Query: 588 SLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILD 647
           +     L   L   ++     +            +          +   + +        
Sbjct: 269 AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 328

Query: 648 LSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHG----S 703
            S+ +             I    L    +    + +      L  L L+   +      S
Sbjct: 329 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS 388

Query: 704 IPTWIDRLPQLSYLLLANNYIEGEIPIQICQ-----LKEVRLIDLSHNNLSGHIPPCL 756
           +   +     L  L L+NN +     +Q+ +        +  + L     S  +   L
Sbjct: 389 LAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 4e-05
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 8/92 (8%)

Query: 159 SSLRILSLADNRLNGSIDI---KGLDSLSNLEELDMSYNAIDNLVVPQGLERLST-LSNL 214
           S LR+L LAD  ++ S        L +  +L ELD+S N + +  + Q +E +      L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 215 KFLRLDYNSFNSSIFSSLGGLS----SLRILS 242
           + L L    ++  +   L  L     SLR++S
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 1e-04
 Identities = 12/95 (12%), Positives = 26/95 (27%), Gaps = 5/95 (5%)

Query: 160 SLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRL 219
            ++ L +    L+ +   + L  L   + + +    +           L     L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 220 DYNSFNSSIFSSLGGL-----SSLRILSLADNRFN 249
             N         +          ++ LSL +    
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 3e-04
 Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 8/87 (9%)

Query: 513 PSSFADMKMLKSLDISYNQLTGEIPDRMA---IGCFSLEILALSNNNLQGHIFSK----- 564
                   +L+ L ++   ++      +A   +   SL  L LSNN L      +     
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 565 KFNLTNLMRLQLDGNKFIGEIPKSLSK 591
           +     L +L L    +  E+   L  
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQA 448

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 3e-04
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 11/94 (11%)

Query: 109 LESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNN----SIFSSLGGLSSLRIL 164
           ++SLD+    ++   +    E L  L   + + LD           I S+L    +L  L
Sbjct: 4   IQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 165 SLADNRLNGSIDIKGLDSLS----NLEELDMSYN 194
           +L  N L        L  L      +++L +   
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 7e-04
 Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 15/104 (14%)

Query: 463 FRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSG---LMDLNLSRNAFNGSIPSSFAD- 518
            +        L  L ++           +   L     L +L+LS N    +      + 
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

Query: 519 ----MKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQ 558
                 +L+ L +     + E+ D        L+ L     +L+
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMED-------RLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 5/74 (6%)

Query: 184 SNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGG-----LSSL 238
           S L  L ++   + +         L    +L+ L L  N    +    L          L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 239 RILSLADNRFNGSI 252
             L L D  ++  +
Sbjct: 429 EQLVLYDIYWSEEM 442

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 26/153 (16%), Positives = 48/153 (31%), Gaps = 16/153 (10%)

Query: 22  WWIEGCLEQERSALLQLKHFFNDDQRLQNWVDAADDENYSDCCQWERVECNKTTGRVIKL 81
             +        +A            R    +  +++       +       +    +  L
Sbjct: 315 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 374

Query: 82  DLGDIKNRKNRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSR-----LNN 136
            L D     +  S   L A+       L  LDLS N +     + G+ +L          
Sbjct: 375 WLAD--CDVSDSSCSSL-AATLLANHSLRELDLSNNCL----GDAGILQLVESVRQPGCL 427

Query: 137 LKFLLLDSNYFNNSIFSSLGGLS----SLRILS 165
           L+ L+L   Y++  +   L  L     SLR++S
Sbjct: 428 LEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 36/189 (19%), Positives = 61/189 (32%), Gaps = 7/189 (3%)

Query: 486 HIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCF 545
            +P ++    +    L+LS N       ++      L  L++   +    +      G  
Sbjct: 24  ALPPDLPKDTT---ILHLSENLLYTFSLATLMPYTRLTQLNLDRAE----LTKLQVDGTL 76

Query: 546 SLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHL 605
            +      ++N    +      L  L  L +  N+       +L     L  LYL  N L
Sbjct: 77  PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136

Query: 606 SGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAY 665
               P  L     LE + + NNNL          L+ L  L L  N+++      F    
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196

Query: 666 IEEIHLSKN 674
           +    L  N
Sbjct: 197 LPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 2e-07
 Identities = 34/217 (15%), Positives = 54/217 (24%), Gaps = 16/217 (7%)

Query: 659 SCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLL 718
                A   E++  K  +      +         L LS N L+      +    +L+ L 
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 719 LANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDD 778
           L    +                       L           +L        A        
Sbjct: 62  LDRAELTKLQVDGTLP------------VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF 109

Query: 779 ASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIG 838
                LP  A  G    +E  ++                 +  + L+ N LT      + 
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169

Query: 839 YLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 875
            L  +  L L  N+L  TIP  F     +    L  N
Sbjct: 170 GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 4e-07
 Identities = 33/180 (18%), Positives = 58/180 (32%), Gaps = 3/180 (1%)

Query: 569 TNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNN 628
            +   L L  N        +L     L  L L    L+         L  L  + + +N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQ 88

Query: 629 LEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSP 688
           L+    +         +    N      L +      ++E++L  N+++     ++  +P
Sbjct: 89  LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148

Query: 689 YLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNL 748
            L  L L+ N L       ++ L  L  LLL  N +   IP        +    L  N  
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 1e-06
 Identities = 40/192 (20%), Positives = 68/192 (35%), Gaps = 6/192 (3%)

Query: 567 NLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPN 626
            + + + +  D       +P  L K      L+LS+N L       L   + L  + +  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL-- 62

Query: 627 NNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHY 686
           +  E         L  L  LDLS+N +        +   +  + +S N++       +  
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 687 SPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHN 746
              L  L L  N L    P  +   P+L  L LANN +       +  L+ +  + L  N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 747 NLSGHIPPCLVN 758
           +L   IP     
Sbjct: 183 SLY-TIPKGFFG 193

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 1e-05
 Identities = 34/207 (16%), Positives = 55/207 (26%), Gaps = 10/207 (4%)

Query: 423 DLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNF 482
               V+    NL+   P  L     +   L L+ N L+      +  + +L  L++    
Sbjct: 11  SHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 483 FRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAI 542
                       L  L       +                 ++          +P     
Sbjct: 67  LTKLQVDGTLPVLGTLD-----LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 543 GCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSD 602
           G   L+ L L  N L+            L +L L  N         L+    L  L L +
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 603 NHLSGKIPRWLGNLSALEDIIMPNNNL 629
           N L   IP+       L    +  N  
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 5e-07
 Identities = 47/313 (15%), Positives = 83/313 (26%), Gaps = 17/313 (5%)

Query: 598 LYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTL 657
           L L++  LS  +P    +L +L   +   N+L   +P     L  L + + +   +    
Sbjct: 43  LELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLP 97

Query: 658 PSCFSPAY---IEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQL 714
           P            E               +  +      DL  +    +           
Sbjct: 98  PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE 157

Query: 715 SYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISS 774
              L     I  +             ++      +       +          A   +  
Sbjct: 158 LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK 217

Query: 775 SSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIP 834
           +  D    +      +       E  Q  T           L  +       N  + EI 
Sbjct: 218 TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR 277

Query: 835 TQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVF 894
           +       +  LN+S+N L   +P     L   E L  S+N  L ++P     L  L   
Sbjct: 278 SLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFN-HLAEVPELPQNLKQL--- 329

Query: 895 RVANNNLSGKIPD 907
            V  N L  + PD
Sbjct: 330 HVEYNPLR-EFPD 341

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 56/348 (16%), Positives = 92/348 (26%), Gaps = 36/348 (10%)

Query: 544 CFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDN 603
                 L L+N  L     S      +L  L    N  + E+P+       L  L + +N
Sbjct: 37  DRQAHELELNNLGLS----SLPELPPHLESLVASCNS-LTELPELPQS---LKSLLVDNN 88

Query: 604 HLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSP 663
           +L                +      LE             ++ + S   I     +    
Sbjct: 89  NLKA--------------LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK 134

Query: 664 AYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNY 723
                  L            +     L  L   Y   +         L   S +   N  
Sbjct: 135 LPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL 194

Query: 724 IEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYV 783
            E      +  L        + NNL   +P    +          +  +       +   
Sbjct: 195 EELPELQNLPFLT----TIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLD 250

Query: 784 LPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRI 843
           +     +G              +        +  S+  +++S NKL  E+P     L R 
Sbjct: 251 VSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER- 308

Query: 844 RALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL--LGKIPPQLIVLN 889
             L  S N+L   +P    NLK    L + YN L     IP  +  L 
Sbjct: 309 --LIASFNHLA-EVPELPQNLK---QLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.2 bits (105), Expect = 3e-05
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 14/99 (14%)

Query: 142 LDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVV 201
              N  +N I S      SL  L++++N+L   +          LE L  S+N +  +  
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP----ALPPRLERLIASFNHLAEVP- 320

Query: 202 PQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRI 240
                      NLK L ++YN            +  LR+
Sbjct: 321 -------ELPQNLKQLHVEYNPL-REFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 9e-05
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 11/95 (11%)

Query: 502 NLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHI 561
               NA +  I S       L+ L++S N+L  E+P         LE L  S N+L    
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA----LPPRLERLIASFNHLA--- 317

Query: 562 FSKKFNLTNLMRLQLDGNKF--IGEIPKSLSKCYL 594
                   NL +L ++ N      +IP+S+    +
Sbjct: 318 -EVPELPQNLKQLHVEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 5e-04
 Identities = 50/347 (14%), Positives = 100/347 (28%), Gaps = 42/347 (12%)

Query: 424 LKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSL------FGSFRMPIHSHQKLATLD 477
              ++L++L LS   P        +L++L+ + NSL        S +  +  +  L  L 
Sbjct: 40  AHELELNNLGLS-SLPELP----PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALS 94

Query: 478 VSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIP 537
                                +  +      +    S      +  SL+           
Sbjct: 95  DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE 154

Query: 538 DRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGG 597
                    L  +   NN+L+          + +    +       +    L+  Y    
Sbjct: 155 LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 214

Query: 598 LYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTL 657
           L  +   L   +                         +    L  L  L  S   +  + 
Sbjct: 215 LLKTLPDLPPSLEAL---------------------NVRDNYLTDLPELPQSLTFLDVSE 253

Query: 658 PSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYL 717
                 + +       N     + S+    P L  L++S N L   +P      P+L  L
Sbjct: 254 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERL 309

Query: 718 LLANNYIEGEIPIQICQLKEVRLIDLSHNNLSG--HIPPCLVNTALN 762
           + + N++  E+P     LK+   + + +N L     IP  + +  +N
Sbjct: 310 IASFNHLA-EVPELPQNLKQ---LHVEYNPLREFPDIPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.004
 Identities = 49/298 (16%), Positives = 82/298 (27%), Gaps = 45/298 (15%)

Query: 496 SGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPD------RMAIGCFSLEI 549
               +L L+    + S+P        L+SL  S N LT E+P+       + +   +L+ 
Sbjct: 38  RQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 550 LALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLL-------------- 595
           L+     L+    S                K I     SL K   L              
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 596 ------GGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLS 649
                   L       +            L    +   N       E   L +L  +   
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 650 NNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMT---------LDLSYNCL 700
           NN +        S   +         +    +S+                       N  
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 701 HGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVN 758
              I +  D  P L  L ++NN +  E+P    +L+    +  S N+L+  +P    N
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPELPQN 325

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 8e-07
 Identities = 17/116 (14%), Positives = 38/116 (32%), Gaps = 3/116 (2%)

Query: 818 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPT-TFSNLKQIESLDLSYNL 876
             SG+  + +    +    +     +  L + +      +       L ++ +L +  + 
Sbjct: 9   GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67

Query: 877 LLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLS 932
           L    P        L+   ++ N L   +  +  Q  + +E    GNP  C   L 
Sbjct: 68  LRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALR 122

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 6e-04
 Identities = 31/151 (20%), Positives = 42/151 (27%), Gaps = 10/151 (6%)

Query: 496 SGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNN 555
            G   L  +R+             + L  L I   Q    +  R   G   L  L +  +
Sbjct: 8   HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 556 NLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLS-GKIPRWLG 614
            L+            L RL L  N     +     +   L  L LS N L      RWL 
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQ 125

Query: 615 NLSALEDIIMPNNNL--EGP-----IPIEFC 638
                    +P   L   G      +P   C
Sbjct: 126 RWEEEGLGGVPEQKLQCHGQGPLAHMPNASC 156

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 2e-05
 Identities = 21/143 (14%), Positives = 48/143 (33%), Gaps = 8/143 (5%)

Query: 514 SSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMR 573
           + + +    + LD+   ++   I + +       + +  S+N +          L  L  
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 574 LQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSG----KIPRWLGNLSALEDIIMPNNNL 629
           L ++ N+              L  L L++N L           L +L+ L  +  P  N 
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 630 EGPIPIEFCQLDYLKILDLSNNT 652
           +        ++  +++LD     
Sbjct: 128 KHYRLYVIYKVPQVRVLDFQKVK 150

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 3e-04
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 828 KLTGEIPTQIGY---LTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 877
           KLT E+  Q        R R L+L    +   I    + L Q +++D S N +
Sbjct: 2   KLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI 53

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 3e-04
 Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 4/102 (3%)

Query: 648 LSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTW 707
           L+   I        +     E+ L   KI   +E++         +D S N +       
Sbjct: 3   LTAELI-EQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--KLDG 58

Query: 708 IDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLS 749
              L +L  LL+ NN I          L ++  + L++N+L 
Sbjct: 59  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 100

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 615 NLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKN 674
           N     ++ +    +   I      LD    +D S+N I   L        ++ + ++ N
Sbjct: 16  NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLLVNNN 73

Query: 675 KIEGRLESIIHYSPYLMTLDLSYNCLHG-SIPTWIDRLPQLSYLLLAN---NYIEGEIPI 730
           +I    E +    P L  L L+ N L        +  L  L+YL +        +     
Sbjct: 74  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY 133

Query: 731 QICQLKEVRLIDLS 744
            I ++ +VR++D  
Sbjct: 134 VIYKVPQVRVLDFQ 147

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 9/114 (7%)

Query: 103 FTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLR 162
                 +  LDLS N +           L+ L  L+ L   ++         +  L  L+
Sbjct: 16  LEQLLLVTHLDLSHNRLRALPPA-----LAALRCLEVL--QASDNALENVDGVANLPRLQ 68

Query: 163 ILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNL--VVPQGLERLSTLSNL 214
            L L +NRL  S  I+ L S   L  L++  N++     +  +  E L ++S++
Sbjct: 69  ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 8e-05
 Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 13/113 (11%)

Query: 112 LDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRL 171
           L L+  ++        +  L +L  +  L L     +N + +    L++LR L +     
Sbjct: 3   LHLAHKDL------TVLCHLEQLLLVTHLDLS----HNRLRALPPALAALRCLEVLQASD 52

Query: 172 NGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSF 224
           N   ++ G+ +L  L+EL +  N +        ++ L +   L  L L  NS 
Sbjct: 53  NALENVDGVANLPRLQELLLCNNRLQQS---AAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 11/132 (8%)

Query: 215 KFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSL 274
           + L L +     ++   L  L  +  L L+ NR               +   S   L ++
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 275 SSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQ 334
              +             +EL + NN +      +      +L  L L G ++     + +
Sbjct: 59  DGVANLPRL--------QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 110

Query: 335 SIGS-LPSLKTL 345
            +   LPS+ ++
Sbjct: 111 RLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 8/116 (6%)

Query: 428 DLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHI 487
            L+H +L+    +  +E    +  L L++N L    R    +   L  L+V         
Sbjct: 4   HLAHKDLT-VLCH--LEQLLLVTHLDLSHNRL----RALPPALAALRCLEVLQASDNALE 56

Query: 488 PVEIGTYLSGLMDLNLSRNAFNG-SIPSSFADMKMLKSLDISYNQLTGEIPDRMAI 542
            V+    L  L +L L  N     +          L  L++  N L  E   +  +
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 9/117 (7%)

Query: 142 LDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVV 201
           L   + + ++   L  L  +  L L+ NRL        L +L  LE L  S NA++N   
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPP--ALAALRCLEVLQASDNALEN--- 57

Query: 202 PQGLERLSTLSNLKFLRLDYNSFNS-SIFSSLGGLSSLRILSLADNRFNGSIDIKGK 257
              ++ ++ L  L+ L L  N     +    L     L +L+L  N       I+ +
Sbjct: 58  ---VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 111

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 4e-04
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 5/103 (4%)

Query: 626 NNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIH 685
           + +L     +E  QL  +  LDLS+N +    P+  +   +E +  S N +E      + 
Sbjct: 7   HKDLTVLCHLE--QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG--VA 62

Query: 686 YSPYLMTLDLSYNCL-HGSIPTWIDRLPQLSYLLLANNYIEGE 727
             P L  L L  N L   +    +   P+L  L L  N +  E
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 5/108 (4%)

Query: 644 KILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGS 703
           ++L L++  +   L        +  + LS N++     ++      L  L  S N L   
Sbjct: 1   RVLHLAHKDL-TVLCHLEQLLLVTHLDLSHNRLRALPPALAAL-RCLEVLQASDNALENV 58

Query: 704 IPTWIDRLPQLSYLLLANNYIEGEIPIQ-ICQLKEVRLIDLSHNNLSG 750
                    Q   LLL NN ++    IQ +     + L++L  N+L  
Sbjct: 59  DGVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 549 ILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGK 608
           +L L++ +L   +      L  +  L L  N+     P +L+    L  L  SDN L   
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 58

Query: 609 IPRWLGNLSALEDIIMPNNNLEG-PIPIEFCQLDYLKILDLSNNTI 653
                      +++++ NN L+             L +L+L  N++
Sbjct: 59  DGVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.3 bits (100), Expect = 4e-05
 Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 3/149 (2%)

Query: 511 SIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTN 570
            IP           L ++ N+L     D +      L  L L  N L G   +     ++
Sbjct: 22  EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 571 LMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLE 630
           +  LQL  NK      K     + L  L L DN +S  +P    +L++L  + + +N   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 631 GPIPIEFCQLDYLKILDLSNNTIFGTLPS 659
               + +   ++L+   L+        PS
Sbjct: 140 CNCHLAWF-AEWLRKKSLNGGAARCGAPS 167

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 5e-05
 Identities = 33/259 (12%), Positives = 75/259 (28%), Gaps = 50/259 (19%)

Query: 615 NLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKN 674
            L+    I    +N+   +      LD +  L      +                     
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGV--------------------T 54

Query: 675 KIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQ 734
            IEG     + Y   L+ L+L  N +       +  L +++ L L+ N ++    I   Q
Sbjct: 55  TIEG-----VQYLNNLIGLELKDNQIT--DLAPLKNLTKITELELSGNPLKNVSAIAGLQ 107

Query: 735 LKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPI 794
             +   +  +       +        L    ++       +      Y+           
Sbjct: 108 SIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYL----------- 156

Query: 795 GEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLT 854
                       +S       L  ++ +    NK++   P  +  L  +  ++L +N ++
Sbjct: 157 ------SIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS 208

Query: 855 GTIPTTFSNLKQIESLDLS 873
              P   +N   +  + L+
Sbjct: 209 DVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 31/237 (13%), Positives = 60/237 (25%), Gaps = 20/237 (8%)

Query: 511 SIPSSFAD--MKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNL 568
           +I   F D  +     +    + +T  +          +  L+     +          L
Sbjct: 8   AINVIFPDPALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVTT--IEGVQYL 62

Query: 569 TNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNN 628
            NL+ L+L  N+     P           L  +       I       +         + 
Sbjct: 63  NNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV 122

Query: 629 LEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSP 688
                      L            +                +LS    +    + +    
Sbjct: 123 TPLAGLSNLQVLYL---------DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLS 173

Query: 689 YLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSH 745
            L TL    N +    P  +  LP L  + L NN I    P+       + ++ L++
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 0.001
 Identities = 35/216 (16%), Positives = 77/216 (35%), Gaps = 11/216 (5%)

Query: 134 LNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSY 193
           L N   +    +   +++  +   L  +  LS     +     I+G+  L+NL  L++  
Sbjct: 18  LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKD 72

Query: 194 NAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSID 253
           N I +L   + L +++ L        + ++           L+S +I  +       ++ 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 254 IKGKQASSILRVPSFVDLVSLSSWSVGINTGL--DSLSNLEELDMTNNAINNLVVPKDYR 311
           +     + I  +     L +L   S+G         L+NL +L       N +       
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA 192

Query: 312 CLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYL 347
            L  L  ++L    + D    +  + +  +L  + L
Sbjct: 193 SLPNLIEVHLKNNQISD----VSPLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 39/221 (17%), Positives = 74/221 (33%), Gaps = 15/221 (6%)

Query: 338 SLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQL--LQSIASFTSLKYL 395
           +L +   +    +N   T+   +L   T L            + +  ++ +    +L  L
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQADLDGITTL--------SAFGTGVTTIEGVQYLNNLIGL 68

Query: 396 SIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLA 455
            ++   +      ++     +     + LKNV       S K  +      T++  L   
Sbjct: 69  ELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128

Query: 456 NNSLF-GSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNG-SIP 513
           +N          I +   LA L        G+  V   T L+ L  L   +   N  S  
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI 188

Query: 514 SSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSN 554
           S  A +  L  + +  NQ++   P        +L I+ L+N
Sbjct: 189 SPLASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTLTN 226

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 1e-04
 Identities = 28/241 (11%), Positives = 68/241 (28%), Gaps = 12/241 (4%)

Query: 644 KILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGS 703
           ++     + +   +PS   P    E+     K+    +        L  +++S N +   
Sbjct: 11  RVFLCQESKV-TEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68

Query: 704 IPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNE 763
           I   +             + I  E    +  +      +L +          + +     
Sbjct: 69  IEADVFSNLP------KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH 122

Query: 764 GYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGID 823
             H     +    D+ + + +   +  G                  +        +  ++
Sbjct: 123 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELN 182

Query: 824 LSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIP 882
           LS N    E+P  +    +    L++S   +         NLK++ +        L K+P
Sbjct: 183 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN---LKKLP 239

Query: 883 P 883
            
Sbjct: 240 T 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 0.002
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 3/58 (5%)

Query: 818 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 875
           S        +K+T EIP+ +        L      L       FS    +E +++S N
Sbjct: 9   SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 63

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 6/113 (5%)

Query: 643 LKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCL-- 700
            + LDL        L +      I+ +   ++ +   L  I    P L++L+LS N L  
Sbjct: 24  QQALDLKGLRSDPDLVAQ----NIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYR 79

Query: 701 HGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIP 753
              + + + + P L  L L+ N ++ E  +   +  ++  + L  N+LS    
Sbjct: 80  LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR 132

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 0.002
 Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 5/121 (4%)

Query: 544 CFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDN 603
            +     AL    L              + L    +     +         L  L LS+N
Sbjct: 19  RYDGSQQALDLKGL--RSDPDLVAQNIDVVLNR-RSSMAATLRIIEENIPELLSLNLSNN 75

Query: 604 HLSGK--IPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCF 661
            L     +   +     L+ + +  N L+    ++  +   L+ L L  N++  T     
Sbjct: 76  RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQS 135

Query: 662 S 662
           +
Sbjct: 136 T 136

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 7e-04
 Identities = 26/332 (7%), Positives = 79/332 (23%), Gaps = 38/332 (11%)

Query: 565 KFNLTNL-MRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGK----IPRWLGNLSAL 619
           +F++    ++L     +    +   L +   +  + LS N +  +    +   + +   L
Sbjct: 2   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 61

Query: 620 EDIIMPNN---NLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKI 676
           E     +     ++  IP     L    +     +T+  +  +    A    I       
Sbjct: 62  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 121

Query: 677 EGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLK 736
                 + +              L         +       ++          ++     
Sbjct: 122 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 181

Query: 737 EVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGE 796
                 L    +  +         L          +                     +  
Sbjct: 182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL-------------------KVLDL 222

Query: 797 EETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIG------YLTRIRALNLSH 850
           ++       + +     +   ++  + L+   L+      +           ++ L L +
Sbjct: 223 QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQY 282

Query: 851 NNLTGTIPTT-----FSNLKQIESLDLSYNLL 877
           N +      T        +  +  L+L+ N  
Sbjct: 283 NEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 48/351 (13%), Positives = 96/351 (27%), Gaps = 32/351 (9%)

Query: 416 KFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSL----FGSFRMPIHSHQ 471
           +F      LK   ++  +        L   + ++K ++L+ N++           I S +
Sbjct: 2   RFSIEGKSLKLDAITTEDEK-SVFAVL-LEDDSVKEIVLSGNTIGTEAARWLSENIASKK 59

Query: 472 KLATLDVSTNFFRGHIPVEIGTYLSGLMDL--NLSRNAFNGSIPSSFADMKMLKSLDISY 529
            L   + S  F    +  EI   L  L+       +        ++F        +D   
Sbjct: 60  DLEIAEFSDIFTG-RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 118

Query: 530 NQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSL 589
                E       G        ++    +  +  K  N   L  +    N  +       
Sbjct: 119 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKE 177

Query: 590 SKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLS 649
                     L    +     R  G    L + +     L+     +             
Sbjct: 178 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 237

Query: 650 NNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESII------HYSPYLMTLDLSYNCLHGS 703
                       S   + E+ L+   +  R  + +        +  L TL L YN +   
Sbjct: 238 A---------LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 288

Query: 704 IPTWI-----DRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLS 749
               +     +++P L +L L  N    E    + +++EV         L 
Sbjct: 289 AVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVVDEIREV-FSTRGRGELD 337

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 32/193 (16%), Positives = 69/193 (35%), Gaps = 13/193 (6%)

Query: 134 LNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSY 193
                   L      +++  +   L+S+  +   ++ +     ++G+  L N+ +L ++ 
Sbjct: 23  FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLNG 77

Query: 194 NAIDNLVVPQGLERLSTLSN---LKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNG 250
           N + ++     L+ L  L                      SL       I  L       
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 251 SIDIKGKQASSILRVPSFVDLVSLSSWSVGINT--GLDSLSNLEELDMTNNAINNLVVPK 308
           S+ +   + + I  +     L +LS     I+    L  L+ L+ L ++ N I++L   +
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL---R 194

Query: 309 DYRCLRKLNTLYL 321
               L+ L+ L L
Sbjct: 195 ALAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 23/184 (12%), Positives = 52/184 (28%), Gaps = 23/184 (12%)

Query: 690 LMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLS 749
           +  +  + + +       I  LP ++ L L  N +                       L+
Sbjct: 48  IDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTD------------------IKPLA 87

Query: 750 GHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSY 809
                  +    N+    +           S         NG     +    +   N   
Sbjct: 88  NLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT 147

Query: 810 YYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIES 869
                  ++        +    +I   +  LT+++ L LS N+++       + LK ++ 
Sbjct: 148 DITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD--LRALAGLKNLDV 204

Query: 870 LDLS 873
           L+L 
Sbjct: 205 LELF 208

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1021
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.98
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.96
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.96
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.96
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.96
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.92
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.92
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.91
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.91
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.91
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.9
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.89
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.89
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.82
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.77
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.74
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.73
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.71
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.67
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.66
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.52
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.88
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.79
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.29

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=0  Score=291.13  Aligned_cols=182  Identities=31%  Similarity=0.522  Sum_probs=109.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCE--EECEEEECCCC--CCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             771999999998634089995348820035899999850--11016842997--92899756996221355566766752
Q 001719           26 GCLEQERSALLQLKHFFNDDQRLQNWVDAADDENYSDCC--QWERVECNKTT--GRVIKLDLGDIKNRKNRKSERHLNAS  101 (1021)
Q Consensus        26 ~c~~~~~~all~~k~~~~~~~~l~~w~~~~~~~~~~~~c--~w~gv~c~~~~--~~v~~l~l~~~~~~~~~~~~~~~~~~  101 (1021)
                      -|+++||+||++||+++.++..+++|..      ++|||  .|.||+|+...  +||++|+|++..+    .+..     
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~~l~sW~~------~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l----~g~~-----   66 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPTTLSSWLP------TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL----PKPY-----   66 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCGGGTTCCT------TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCC----SSCE-----
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCCCCCCC------CCCCCCCCCCCEEEECCCCCEEEEEEECCCCCC----CCCC-----
T ss_conf             9898999999999997799986778899------999988948896974899947988998989988----8888-----


Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCC
Q ss_conf             3568989988969898779854520111016999997996989-878973321478999998997698314444591002
Q 001719          102 LFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDS-NYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGL  180 (1021)
Q Consensus       102 ~~~~~~~L~~LdLs~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~-n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l  180 (1021)
                                          .++    ..+.++++|++|++++ |.+.+.+|..|+++++|++|++++|.+.+..+. .+
T Consensus        67 --------------------~lp----~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~-~~  121 (313)
T d1ogqa_          67 --------------------PIP----SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FL  121 (313)
T ss_dssp             --------------------ECC----GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG-GG
T ss_pred             --------------------CCC----HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC-CC
T ss_conf             --------------------798----47846753352020265433300243114542001102035643443322-22


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCC-CEEECCCCCCCCC
Q ss_conf             8999998995999879998873100013799998978888997988630000399998-7897589637443
Q 001719          181 DSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSL-RILSLADNRFNGS  251 (1021)
Q Consensus       181 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L-~~L~Ls~n~l~~~  251 (1021)
                      ..+.+|+++++++|.+....|.    .+.++++++++++++|.+.+.+|..+..+..+ +.++++.|.+++.
T Consensus       122 ~~~~~L~~l~l~~N~~~~~~p~----~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~  189 (313)
T d1ogqa_         122 SQIKTLVTLDFSYNALSGTLPP----SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK  189 (313)
T ss_dssp             GGCTTCCEEECCSSEEESCCCG----GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred             CCHHHHCCCCCCCCCCCCCCCH----HHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             2011100111122455556851----2206740000002355335620312144311232310224643533

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=0  Score=249.01  Aligned_cols=257  Identities=33%  Similarity=0.540  Sum_probs=202.1

Q ss_pred             CCEEECCCCCCCC--CCHHHHCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             5769842885999--6124420898776898788-966677530003999997997648706557899879896019984
Q 001719          595 LGGLYLSDNHLSG--KIPRWLGNLSALEDIIMPN-NNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHL  671 (1021)
Q Consensus       595 L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~L  671 (1021)
                      ++.|+++++.+.+  .+|..+.++++|++|++++ |.+.|.+|..+.++++|++|++++|++.                 
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~-----------------  114 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS-----------------  114 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE-----------------
T ss_pred             EEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCC-----------------
T ss_conf             889989899888888798478467533520202654333002431145420011020356434-----------------


Q ss_pred             CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC-CEEECCCCCCCC
Q ss_conf             2772565560444238565689743773588878001699997678741561542378011499887-889666883855
Q 001719          672 SKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEV-RLIDLSHNNLSG  750 (1021)
Q Consensus       672 ~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~~L~Ls~N~l~g  750 (1021)
                            +..+..+..++.|+.++++.|.+.+.+|..+..++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++
T Consensus       115 ------~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~  188 (313)
T d1ogqa_         115 ------GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG  188 (313)
T ss_dssp             ------EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE
T ss_pred             ------CCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             ------43322222011100111122455556851220674000000235533562031214431123231022464353


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCEEC
Q ss_conf             69943101433445443445667898887554358989999999875317886237521111110245547991124205
Q 001719          751 HIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLT  830 (1021)
Q Consensus       751 ~ip~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~  830 (1021)
                      ..|..+..+.                                                          ...++++++.+.
T Consensus       189 ~~~~~~~~l~----------------------------------------------------------~~~l~l~~~~~~  210 (313)
T d1ogqa_         189 KIPPTFANLN----------------------------------------------------------LAFVDLSRNMLE  210 (313)
T ss_dssp             ECCGGGGGCC----------------------------------------------------------CSEEECCSSEEE
T ss_pred             CCCCCCCCCC----------------------------------------------------------CCCCCCCCCCCC
T ss_conf             3243322222----------------------------------------------------------223333334332


Q ss_pred             CCCCCCCCCCCCCCEEECCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCEECCCCCCC
Q ss_conf             86920125887798897678967543000013888888886868628777981232699998898108801002898532
Q 001719          831 GEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVA  910 (1021)
Q Consensus       831 g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~  910 (1021)
                      +.+|..+..++.++.+++++|.+.+.+| .++.+++|+.|+|++|+++|.+|..+.++++|++|++++|+++|.+|.. +
T Consensus       211 ~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~-~  288 (313)
T d1ogqa_         211 GDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-G  288 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-T
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCCC-C
T ss_conf             2222222222221112222222222222-2224554444447657066608768847999998979588351668986-6


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             3578874434476688898998998
Q 001719          911 QFSTFEEDSYEGNPFLCGLPLSKSC  935 (1021)
Q Consensus       911 ~~~~l~~~~~~gNp~lC~~~l~~~c  935 (1021)
                      .+++++.+++.||+.+||.|+. .|
T Consensus       289 ~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         289 NLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             TGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             CCCCCCHHHHCCCCCCCCCCCC-CC
T ss_conf             6799897886889500198988-98

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=100.00  E-value=1.8e-39  Score=211.71  Aligned_cols=37  Identities=27%  Similarity=0.488  Sum_probs=13.1

Q ss_pred             CCCCEEECCCCCCCCCCCHHCCCCCCCCCEEECCCCCCCC
Q ss_conf             9998997698314444591002899999899599987999
Q 001719          159 SSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDN  198 (1021)
Q Consensus       159 ~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~  198 (1021)
                      .+|++|+++++.+. .++  ++..+++|++|++++|++++
T Consensus        44 ~~l~~L~l~~~~I~-~l~--gl~~L~nL~~L~Ls~N~l~~   80 (384)
T d2omza2          44 DQVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLTD   80 (384)
T ss_dssp             TTCCEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCC
T ss_pred             CCCCEEECCCCCCC-CCC--CCCCCCCCCEEECCCCCCCC
T ss_conf             78789989998987-762--42458999989681881798

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=100.00  E-value=1.4e-39  Score=212.32  Aligned_cols=58  Identities=21%  Similarity=0.374  Sum_probs=20.7

Q ss_pred             CCCCCCCEEECCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf             58877988976789675430000138888888868686287779812326999988981088
Q 001719          838 GYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANN  899 (1021)
Q Consensus       838 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N  899 (1021)
                      ..+++|+.|++++|++++ ++ .++++++|+.|++++|++++.+|  +.++++|+.|++++|
T Consensus       326 ~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         326 SSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCCCEEECCCCCCCC-CH-HHCCCCCCCEEECCCCCCCCCHH--HCCCCCCCEEECCCC
T ss_conf             668988989898998999-74-67089999989897995899800--003999999639789

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.3e-35  Score=188.49  Aligned_cols=284  Identities=19%  Similarity=0.218  Sum_probs=0.0

Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             65898248846565884323557557698428859996124420898776898788966677530003999997997648
Q 001719          571 LMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSN  650 (1021)
Q Consensus       571 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  650 (1021)
                      .+.++-++.+++ .+|..+.  +.+++|++++|+++...+..|.++++|++|++++|.+....|..|.++++|+.|++++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEECCCCCC-CCCCCCC--CCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEECCCC
T ss_conf             999985599988-5198889--9979897849918986965760465652311234434452356652798557831568


Q ss_pred             CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCC--CCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf             706557899879896019984277256556044423856568974377--358887800169999767874156154237
Q 001719          651 NTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYN--CLHGSIPTWIDRLPQLSYLLLANNYIEGEI  728 (1021)
Q Consensus       651 n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N--~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  728 (1021)
                      |++.......  ...+..|.+..|.+....+..+.....+..++...|  ......+..+..+++|+.+++++|.+. .+
T Consensus        89 n~l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l  165 (305)
T d1xkua_          89 NQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TI  165 (305)
T ss_dssp             SCCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SC
T ss_pred             CCCCCCCCCH--HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC
T ss_conf             7567676400--11132321024610234444540133110000123333346777642234565671203467745-16


Q ss_pred             CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf             80114998878896668838556994310143344544344566789888755435898999999987531788623752
Q 001719          729 PIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMS  808 (1021)
Q Consensus       729 p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  808 (1021)
                      |..+  +++|+.|++++|..++..+..+....                                                
T Consensus       166 ~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~------------------------------------------------  195 (305)
T d1xkua_         166 PQGL--PPSLTELHLDGNKITKVDAASLKGLN------------------------------------------------  195 (305)
T ss_dssp             CSSC--CTTCSEEECTTSCCCEECTGGGTTCT------------------------------------------------
T ss_pred             CCCC--CCCCCEEECCCCCCCCCCHHHHHCCC------------------------------------------------
T ss_conf             7101--77667898978867788826764134------------------------------------------------


Q ss_pred             CCCCCCCCCCCCEEECCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCC--
Q ss_conf             111111024554799112420586920125887798897678967543000013888888886868628777981232--
Q 001719          809 YYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLI--  886 (1021)
Q Consensus       809 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~--  886 (1021)
                               .++.|++++|.+++..+..+.++++|++|+|++|.|+ .+|..+..+++|+.|+|++|+|+......|.  
T Consensus       196 ---------~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~  265 (305)
T d1xkua_         196 ---------NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP  265 (305)
T ss_dssp             ---------TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred             ---------CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCHHHCCCC
T ss_conf             ---------1330154455332223454334433224302554002-463110334678989898986576381002672


Q ss_pred             ----CCCCCCEEECCCCCCE--ECCCCCCCCCCCCCCCCC
Q ss_conf             ----6999988981088010--028985323578874434
Q 001719          887 ----VLNTLAVFRVANNNLS--GKIPDRVAQFSTFEEDSY  920 (1021)
Q Consensus       887 ----~l~~L~~L~ls~N~l~--g~~p~~~~~~~~l~~~~~  920 (1021)
                          .+.+|+.+++++|.+.  ...|..+.-+....++.+
T Consensus       266 ~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~~~~~  305 (305)
T d1xkua_         266 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL  305 (305)
T ss_dssp             SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC
T ss_pred             CHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCCCCC
T ss_conf             1002158889788989957667689768300245742409

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-34  Score=183.25  Aligned_cols=268  Identities=22%  Similarity=0.168  Sum_probs=0.0

Q ss_pred             CEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECC
Q ss_conf             89986899787566425541699997898878868877770012999988997678758986404665149987499878
Q 001719          474 ATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALS  553 (1021)
Q Consensus       474 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~  553 (1021)
                      ..++.+++.++ .+|..+   .+.+++|+|++|.++...+..|.++++|++|++++|.+. .++...+.++..+..+...
T Consensus        14 ~~v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~   88 (284)
T d1ozna_          14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS   88 (284)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             EEEECCCCCCC-CCCCCC---CCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC
T ss_conf             69984799989-449788---999888977488179879778641421300001344543-3211121222222222222


Q ss_pred             -CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC
Q ss_conf             -9866644564334899865898248846565884323557557698428859996124420898776898788966677
Q 001719          554 -NNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGP  632 (1021)
Q Consensus       554 -~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~  632 (1021)
                       .+.+....+..+.++++|++|++++|.+....+..+.....|+.+++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus        89 ~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l  168 (284)
T d1ozna_          89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (284)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCHHCCCCHHHHCCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCC
T ss_conf             10223544620101010277875688544320135332000121102001431445805740434050223141765662


Q ss_pred             CCCCCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf             53000399999799764870655789987-98960199842772565560444238565689743773588878001699
Q 001719          633 IPIEFCQLDYLKILDLSNNTIFGTLPSCF-SPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRL  711 (1021)
Q Consensus       633 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l  711 (1021)
                      .+..|.++++|+.+++++|.+.+..|..| ..++|+.|++++|.+.+..+..|..+++|+.+++++|.+. -......-.
T Consensus       169 ~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~-C~C~~~~l~  247 (284)
T d1ozna_         169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV-CDCRARPLW  247 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE-CSGGGHHHH
T ss_pred             CHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC-CCCCCHHHH
T ss_conf             5666546563413142114346628167665320002333335221000002355465688981199887-875646999


Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             997678741561542378011499887889666883855
Q 001719          712 PQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSG  750 (1021)
Q Consensus       712 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~g  750 (1021)
                      ..++.+....+.+....|..+.+   ....+++.+.++|
T Consensus       248 ~~l~~~~~~~~~~~C~~p~~l~g---~~l~~l~~~~l~g  283 (284)
T d1ozna_         248 AWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG  283 (284)
T ss_dssp             HHHHHCCSEECCCBEEESGGGTT---CBGGGSCGGGSCC
T ss_pred             HHHHHCCCCCCCEEECCCHHHCC---CCCCCCCHHHCCC
T ss_conf             99986738888667479669849---8534189888789

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-33  Score=181.35  Aligned_cols=205  Identities=23%  Similarity=0.258  Sum_probs=103.7

Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             99997997648706557899879896019984277256556044423856568974377358887800169999767874
Q 001719          640 LDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLL  719 (1021)
Q Consensus       640 l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  719 (1021)
                      ...+..++.+++.++. +|..+ ++.++.|+|++|.+++..+..|..+++|+.|++++|.++. ++ .++.+++|++|++
T Consensus         9 ~~~~~~v~C~~~~L~~-iP~~l-p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTA-LPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDL   84 (266)
T ss_dssp             STTCCEEECTTSCCSS-CCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEEC
T ss_pred             CCCCEEEECCCCCCCE-ECCCC-CCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC-CC-CCCCCCCCCCCCC
T ss_conf             6898699806999886-19675-7688989884992898597786345655221356654444-31-1111223211111


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             15615423780114998878896668838556994310143344544344566789888755435898999999987531
Q 001719          720 ANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEET  799 (1021)
Q Consensus       720 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  799 (1021)
                      ++|+++. .+..+..+++|+.|++++|.+                                                   
T Consensus        85 s~N~l~~-~~~~~~~l~~L~~L~l~~~~~---------------------------------------------------  112 (266)
T d1p9ag_          85 SHNQLQS-LPLLGQTLPALTVLDVSFNRL---------------------------------------------------  112 (266)
T ss_dssp             CSSCCSS-CCCCTTTCTTCCEEECCSSCC---------------------------------------------------
T ss_pred             CCCCCCC-CCCCCCCCCCCCCCCCCCCCC---------------------------------------------------
T ss_conf             2222211-111212222222222222311---------------------------------------------------


Q ss_pred             EEEEECCCCCCCCCCCCCCCCEEECCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCHHHCCCCCCCCCEEECCCCCCCC
Q ss_conf             78862375211111102455479911242058692012588779889767896754300001388888888686862877
Q 001719          800 VQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLG  879 (1021)
Q Consensus       800 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  879 (1021)
                                                    .+..+..+..+..++.|++++|.++...+..+..++.++.+++++|++++
T Consensus       113 ------------------------------~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~  162 (266)
T d1p9ag_         113 ------------------------------TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (266)
T ss_dssp             ------------------------------CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             ------------------------------CEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHCCCCCCCCCC
T ss_conf             ------------------------------01100112222111122124342102212333221110000000156522


Q ss_pred             CCCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             7981232699998898108801002898532357887443447668889899
Q 001719          880 KIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL  931 (1021)
Q Consensus       880 ~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~~~~~gNp~lC~~~l  931 (1021)
                      ..+..+..+++|+.|++++|+|+ .+|.++..+..++.+.+.||||.|+|.+
T Consensus       163 ~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             CCCCCCCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEEECCCCCCCCCCH
T ss_conf             37200134212423430139785-5686677788899998369998788643

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=6.5e-31  Score=168.60  Aligned_cols=106  Identities=24%  Similarity=0.176  Sum_probs=48.3

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCC
Q ss_conf             77689878896667753000399999799764870655789987989601998427725655604442385656897437
Q 001719          618 ALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSY  697 (1021)
Q Consensus       618 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~  697 (1021)
                      +++.|++++|.+++..+..|.++++|+.|++++|+++.. +                        .+..+++|+.|++++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~------------------------~~~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q------------------------VDGTLPVLGTLDLSH   86 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E------------------------CCSCCTTCCEEECCS
T ss_pred             CCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC-C------------------------CCCCCCCCCCCCCCC
T ss_conf             889898849928985977863456552213566544443-1------------------------111122321111122


Q ss_pred             CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf             7358887800169999767874156154237801149988788966688385
Q 001719          698 NCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLS  749 (1021)
Q Consensus       698 N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  749 (1021)
                      |++.. .+..+..+++|+.|++++|.+....+..+..+.+++.+++++|.++
T Consensus        87 N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~  137 (266)
T d1p9ag_          87 NQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK  137 (266)
T ss_dssp             SCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred             CCCCC-CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             22211-1112122222222222223110110011222211112212434210

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.5e-32  Score=173.33  Aligned_cols=62  Identities=26%  Similarity=0.299  Sum_probs=31.2

Q ss_pred             CCCEEECCCCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCC----CCCCCCCCCCCCEEECCCCCCC
Q ss_conf             9988969898779854520111016999997996989878973----3214789999989976983144
Q 001719          108 QLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNS----IFSSLGGLSSLRILSLADNRLN  172 (1021)
Q Consensus       108 ~L~~LdLs~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~Ls~n~l~  172 (1021)
                      .|++||++++.+++....   +.+..++++++|+|++|+++..    +...+..+++|++|||++|.++
T Consensus         3 ~l~~ld~~~~~i~~~~~~---~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~   68 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWA---ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG   68 (460)
T ss_dssp             EEEEEEEESCCCCHHHHH---HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH
T ss_pred             CCCEEEEECCCCCHHHHH---HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCC
T ss_conf             877798208958868999---999767799999828999988999999999853999888979598597

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.96  E-value=5.8e-26  Score=143.64  Aligned_cols=11  Identities=45%  Similarity=0.558  Sum_probs=3.6

Q ss_pred             CCEEECCCCCC
Q ss_conf             88886868628
Q 001719          867 IESLDLSYNLL  877 (1021)
Q Consensus       867 L~~L~Ls~N~l  877 (1021)
                      |+.|+|++|+|
T Consensus       306 L~~L~L~~N~L  316 (353)
T d1jl5a_         306 LERLIASFNHL  316 (353)
T ss_dssp             CCEEECCSSCC
T ss_pred             CCEEECCCCCC
T ss_conf             99898999968

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.96  E-value=2.6e-25  Score=140.40  Aligned_cols=13  Identities=38%  Similarity=0.488  Sum_probs=4.8

Q ss_pred             CCCEEECCCCCCC
Q ss_conf             7988976789675
Q 001719          842 RIRALNLSHNNLT  854 (1021)
Q Consensus       842 ~L~~L~Ls~N~l~  854 (1021)
                      +|+.|+|++|+|+
T Consensus       305 ~L~~L~L~~N~L~  317 (353)
T d1jl5a_         305 RLERLIASFNHLA  317 (353)
T ss_dssp             TCCEEECCSSCCS
T ss_pred             CCCEEECCCCCCC
T ss_conf             7998989999687

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.1e-30  Score=164.57  Aligned_cols=61  Identities=20%  Similarity=0.255  Sum_probs=25.8

Q ss_pred             CCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCC----CCCHHCCCCCCCCCEEECCCCCCC
Q ss_conf             9979969898789733-2147899999899769831444----459100289999989959998799
Q 001719          136 NLKFLLLDSNYFNNSI-FSSLGGLSSLRILSLADNRLNG----SIDIKGLDSLSNLEELDMSYNAID  197 (1021)
Q Consensus       136 ~L~~L~Ls~n~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~----~i~~~~l~~l~~L~~L~Ls~n~l~  197 (1021)
                      +|++||++++++++.. ...+..+++++.|+|++|.++.    .+.. .+..+++|++|||++|.++
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~-~L~~~~~L~~LdLs~N~i~   68 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELG   68 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHH-HHHCCCCCCEEECCCCCCC
T ss_conf             87779820895886899999976779999982899998899999999-9853999888979598597

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.5e-24  Score=135.39  Aligned_cols=18  Identities=22%  Similarity=0.185  Sum_probs=6.8

Q ss_pred             CCCCCCCCEEECCCCCCC
Q ss_conf             138888888868686287
Q 001719          861 FSNLKQIESLDLSYNLLL  878 (1021)
Q Consensus       861 ~~~l~~L~~L~Ls~N~l~  878 (1021)
                      |.++++|+.|++++|+++
T Consensus       197 f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         197 FHGASGPVILDISRTRIH  214 (242)
T ss_dssp             TTTSCCCSEEECTTSCCC
T ss_pred             HCCCCCCCEEECCCCCCC
T ss_conf             668999998989799289

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.92  E-value=2e-23  Score=130.86  Aligned_cols=202  Identities=23%  Similarity=0.315  Sum_probs=0.0

Q ss_pred             ECCCCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCCEEECC
Q ss_conf             69898779854520111016999997996989878973321478999998997698314444591002899999899599
Q 001719          113 DLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMS  192 (1021)
Q Consensus       113 dLs~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~Ls  192 (1021)
                      +++.+.+.+...      +..+++|+.|++.+|.++..  +.+..+++|++|++++|.+. .++  .+.++++|++++++
T Consensus        25 ~l~~~~~~d~~~------~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~-~~~--~l~~l~~l~~l~~~   93 (227)
T d1h6ua2          25 AAGKSNVTDTVT------QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQIT-DLA--PLKNLTKITELELS   93 (227)
T ss_dssp             HTTCSSTTSEEC------HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCG--GGTTCCSCCEEECC
T ss_pred             HHCCCCCCCCCC------HHHCCCCCEEECCCCCCCCC--HHHHCCCCCCEEECCCCEEE-CCC--CCCCCCCCCCCCCC
T ss_conf             848887677579------87848868997779999766--45744888837635785320-254--31123343201211


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             98799988731000137999989788889979886300003999987897589637443456676544335677534243
Q 001719          193 YNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLV  272 (1021)
Q Consensus       193 ~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~~~~~~l~~l  272 (1021)
                      +|.++...      .+.++++|+.+.++.+...+.  ..+...+.++.+.++.+.+....+                   
T Consensus        94 ~n~~~~i~------~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~-------------------  146 (227)
T d1h6ua2          94 GNPLKNVS------AIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP-------------------  146 (227)
T ss_dssp             SCCCSCCG------GGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG-------------------
T ss_pred             CCCCCCCC------CCCCCCCCCCCCCCCCCCCCC--CHHCCCCCHHHHHCHHHHHCHHHH-------------------
T ss_conf             12222222------222222221221222443311--000002301222000000000000-------------------


Q ss_pred             ECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf             05787677887888989998320898877997678133421023412368831236764322248999997897457531
Q 001719          273 SLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNF  352 (1021)
Q Consensus       273 ~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~  352 (1021)
                                  +..+++|+.|++++|.+...                             ..++.+++|+.|++++|.+
T Consensus       147 ------------~~~~~~L~~L~l~~n~~~~~-----------------------------~~l~~l~~L~~L~Ls~n~l  185 (227)
T d1h6ua2         147 ------------LAGLTNLQYLSIGNAQVSDL-----------------------------TPLANLSKLTTLKADDNKI  185 (227)
T ss_dssp             ------------GGGCTTCCEEECCSSCCCCC-----------------------------GGGTTCTTCCEEECCSSCC
T ss_pred             ------------HCCCCCCCCCCCCCCCCCCC-----------------------------HHHCCCCCCEECCCCCCCC
T ss_conf             ------------01021110023333333310-----------------------------0105646335644588841


Q ss_pred             CCCCCCHHHHCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCEEECCC
Q ss_conf             00118322206898764871166433223234330698644998448
Q 001719          353 KGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRG  399 (1021)
Q Consensus       353 ~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~  399 (1021)
                      .+   ...+.++++|++|++++|.++...+   +..+++|+.|++++
T Consensus       186 ~~---l~~l~~l~~L~~L~Ls~N~lt~i~~---l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         186 SD---ISPLASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTN  226 (227)
T ss_dssp             CC---CGGGGGCTTCCEEECTTSCCCBCGG---GTTCTTCCEEEEEE
T ss_pred             CC---CHHHCCCCCCCEEECCCCCCCCCCC---CCCCCCCCEEEEEC
T ss_conf             77---8534479999989795996899802---03699989897129

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.91  E-value=4.2e-23  Score=129.25  Aligned_cols=37  Identities=30%  Similarity=0.570  Sum_probs=12.4

Q ss_pred             CCCCCEEECCCCCCCCCHHHCCCCCCCCCEEECCCCCCC
Q ss_conf             877988976789675430000138888888868686287
Q 001719          840 LTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLL  878 (1021)
Q Consensus       840 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  878 (1021)
                      +++|+.+++++|.+++..+  +.++++|+.|+|++|+++
T Consensus       155 l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         155 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCCCCCCCCCCCCCC--CCCCCCCCEEECCCCCCC
T ss_conf             1332100134643025645--367898999989799899

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.91  E-value=2.4e-24  Score=135.51  Aligned_cols=57  Identities=26%  Similarity=0.396  Sum_probs=19.7

Q ss_pred             EECCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCHHHCCCCCCCCCEEECCCCCCC
Q ss_conf             991124205869201258877988976789675430000138888888868686287
Q 001719          822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLL  878 (1021)
Q Consensus       822 L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  878 (1021)
                      |+|++|++++..|..|.++++|+.|+|++|+|++..|..|..+++|++|+|++|.+.
T Consensus        83 L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             EEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC
T ss_conf             100355344349799807974655245774535359778568753342000364434

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.91  E-value=1.2e-22  Score=126.87  Aligned_cols=17  Identities=24%  Similarity=0.405  Sum_probs=5.9

Q ss_pred             CCCCCCCCEEECCCCCC
Q ss_conf             78999998997698314
Q 001719          155 LGGLSSLRILSLADNRL  171 (1021)
Q Consensus       155 l~~l~~L~~L~Ls~n~l  171 (1021)
                      ++++++|++|++++|.+
T Consensus        80 l~~l~~L~~L~l~~n~~   96 (199)
T d2omxa2          80 LKNLTKLVDILMNNNQI   96 (199)
T ss_dssp             GTTCTTCCEEECCSSCC
T ss_pred             CCCCCCCCCCCCCCCCC
T ss_conf             16775223111122222

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.5e-23  Score=131.53  Aligned_cols=38  Identities=16%  Similarity=0.119  Sum_probs=13.4

Q ss_pred             CCCCEEECCCCCCCCCCCHHCCCCCCCCCEEECCCCCC
Q ss_conf             99989976983144445910028999998995999879
Q 001719          159 SSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAI  196 (1021)
Q Consensus       159 ~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l  196 (1021)
                      .+|++||++++.+........+.++++|++|+++++.+
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l   83 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL   83 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBC
T ss_pred             CCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             87887889898457779999997487765145234679

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=9.4e-23  Score=127.47  Aligned_cols=35  Identities=29%  Similarity=0.293  Sum_probs=11.2

Q ss_pred             CCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECC
Q ss_conf             99998978888997988630000399998789758
Q 001719          210 TLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLA  244 (1021)
Q Consensus       210 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls  244 (1021)
                      .+++|++|+++++.+.+..+..++.+++|++|+++
T Consensus        69 ~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls  103 (284)
T d2astb2          69 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  103 (284)
T ss_dssp             TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             HCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf             48776514523467986789998518997571510

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.89  E-value=5.6e-23  Score=128.60  Aligned_cols=88  Identities=24%  Similarity=0.275  Sum_probs=33.2

Q ss_pred             CCCEEECCCCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCC
Q ss_conf             99889698987798545201110169999979969898789733214789999989976983144445910028999998
Q 001719          108 QLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLE  187 (1021)
Q Consensus       108 ~L~~LdLs~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~  187 (1021)
                      ++++|+|++|.|.+..+.   ..|.++++|++|++++|.+....+..+..+++|++|++++|.+. .++...|.++++|+
T Consensus        30 ~l~~L~Ls~N~i~~~~~~---~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~-~l~~~~F~~l~~L~  105 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSD---GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLK  105 (192)
T ss_dssp             TCSEEECCSCCCCSBCCS---CSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC-EECSSSSTTCTTCC
T ss_pred             CCCEEEECCCCCCCCCCC---CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCC-CCCHHHHHCCCCCC
T ss_conf             878898489877553020---02578762721301363221212122211222210100355344-34979980797465


Q ss_pred             EEECCCCCCCCC
Q ss_conf             995999879998
Q 001719          188 ELDMSYNAIDNL  199 (1021)
Q Consensus       188 ~L~Ls~n~l~~~  199 (1021)
                      +|+|++|.++.+
T Consensus       106 ~L~L~~N~l~~i  117 (192)
T d1w8aa_         106 TLNLYDNQISCV  117 (192)
T ss_dssp             EEECCSSCCCEE
T ss_pred             CCCCCCCCCCCC
T ss_conf             524577453535

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.82  E-value=3.1e-20  Score=114.82  Aligned_cols=243  Identities=17%  Similarity=0.155  Sum_probs=0.0

Q ss_pred             CCCHHHCCCCCCCEEEECCCCCCCCCCHHH---HHCCCCCCEEECCCCCCCCC----------CCCCCCCCCCCCEEECC
Q ss_conf             956110089985899902885656787467---63399988998768868888----------86685699984899868
Q 001719          413 TFPKFLYHQHDLKNVDLSHLNLSGKFPNWL---VENNTNLKTLLLANNSLFGS----------FRMPIHSHQKLATLDVS  479 (1021)
Q Consensus       413 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~---~~~l~~L~~L~Ls~n~l~~~----------~~~~~~~l~~L~~L~Ls  479 (1021)
                      .+...+.....+++|++++|.+.......+   +...++|+.+.++++.....          ....+..+++|+.|+++
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             99999963899788978498377899999999998589988888877754334542106787999887547775633000


Q ss_pred             CCCCCCC----CCHHHHHCCCCCCEEECCCCCCCCCCCCCC-------------CCCCCCCEEECCCCCCCCCCCHHH--
Q ss_conf             9978756----642554169999789887886887777001-------------299998899767875898640466--
Q 001719          480 TNFFRGH----IPVEIGTYLSGLMDLNLSRNAFNGSIPSSF-------------ADMKMLKSLDISYNQLTGEIPDRM--  540 (1021)
Q Consensus       480 ~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~-------------~~l~~L~~L~Ls~n~l~~~i~~~~--  540 (1021)
                      +|.+...    +...+.. .++|+.|++++|.+.......+             ...+.|+.+++++|.+.......+  
T Consensus       102 ~n~i~~~~~~~l~~~l~~-~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~  180 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  180 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHCC-CCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf             013455433310111002-3432100000246666543111121222211000146764211101365013554332211


Q ss_pred             -HHCCCCCCEEECCCCCCCCC-----CCCCCCCCCCCCEEECCCCCCCCC----CCCCCCCCCCCCEEECCCCCCCCCCH
Q ss_conf             -51499874998789866644-----564334899865898248846565----88432355755769842885999612
Q 001719          541 -AIGCFSLEILALSNNNLQGH-----IFSKKFNLTNLMRLQLDGNKFIGE----IPKSLSKCYLLGGLYLSDNHLSGKIP  610 (1021)
Q Consensus       541 -~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~p  610 (1021)
                       ...++.|+.|+++.|.+...     +...+...++|+.|++++|.+...    +...+..+++|++|++++|.+++...
T Consensus       181 ~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~  260 (344)
T d2ca6a1         181 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA  260 (344)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHH
T ss_conf             11233321335433322222223200243321101211222333322222222344433232211110300475671566


Q ss_pred             HHH------CCCCCCCEEECCCCCCCCCCCCCCC-----CCCCCCEEECCCCCCCCC
Q ss_conf             442------0898776898788966677530003-----999997997648706557
Q 001719          611 RWL------GNLSALEDIIMPNNNLEGPIPIEFC-----QLDYLKILDLSNNTIFGT  656 (1021)
Q Consensus       611 ~~l------~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~  656 (1021)
                      ..+      ...+.|+.|++++|.+.......+.     +++.|+.|++++|.+...
T Consensus       261 ~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         261 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCC
T ss_conf             788877631568888989898986980899999999970389999897879808986

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6.7e-19  Score=108.06  Aligned_cols=87  Identities=21%  Similarity=0.176  Sum_probs=33.6

Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCC
Q ss_conf             68989988969898779854520111016999997996989878973321478999998997698314444591002899
Q 001719          104 TPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSL  183 (1021)
Q Consensus       104 ~~~~~L~~LdLs~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l  183 (1021)
                      .+...+|+|||++|.|.....     .+..+++|++|++++|.+...  +.+..+++|++|++++|.++ .++...+..+
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~-----~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l   86 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIEN-----LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQAL   86 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCC-----GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHC
T ss_pred             CCCCCCCEEECCCCCCCCCCC-----CCCCCCCCCEEECCCCCCCCC--CCCCCCCCHHHHHCCCCCCC-CCCCCCCCCC
T ss_conf             685748489788997886576-----200414599898979978764--77445761306431021345-7776322334


Q ss_pred             CCCCEEECCCCCCCC
Q ss_conf             999899599987999
Q 001719          184 SNLEELDMSYNAIDN  198 (1021)
Q Consensus       184 ~~L~~L~Ls~n~l~~  198 (1021)
                      ++|++|++++|.+..
T Consensus        87 ~~L~~L~L~~N~i~~  101 (162)
T d1a9na_          87 PDLTELILTNNSLVE  101 (162)
T ss_dssp             TTCCEEECCSCCCCC
T ss_pred             CCCCCCEECCCCCCC
T ss_conf             534434203000166

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=1.2e-17  Score=101.78  Aligned_cols=38  Identities=29%  Similarity=0.386  Sum_probs=12.5

Q ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf             999997996989878973321478999998997698314
Q 001719          133 RLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRL  171 (1021)
Q Consensus       133 ~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l  171 (1021)
                      .+++|++|++++|.++ .+|..++.+++|++|++++|.+
T Consensus        18 ~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i   55 (124)
T d1dcea3          18 QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL   55 (124)
T ss_dssp             GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC
T ss_pred             CCCCCCEEECCCCCCC-CCHHHHHHHHCCCCCCCCCCCC
T ss_conf             5898898979787168-6521565543135453243211

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=7.1e-18  Score=102.91  Aligned_cols=111  Identities=16%  Similarity=0.170  Sum_probs=89.7

Q ss_pred             CCEEECCCCEECCCCCCCCCCCCCCCEEECCCC-CCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             547991124205869201258877988976789-6754300001388888888686862877798123269999889810
Q 001719          819 MSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHN-NLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVA  897 (1021)
Q Consensus       819 L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls  897 (1021)
                      .+.++.+++.+. .+|..+..+++|+.|++++| .++...+..|.++++|+.|+|++|+|+...|.+|..+++|+.|+++
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCEEEECCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECC
T ss_conf             996985289976-5860025765657431689866443692122566666721620212477420111245543333226


Q ss_pred             CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8801002898532357887443447668889899
Q 001719          898 NNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL  931 (1021)
Q Consensus       898 ~N~l~g~~p~~~~~~~~l~~~~~~gNp~lC~~~l  931 (1021)
                      +|+++...+.. -+...+..+++.||||.|+|.+
T Consensus        89 ~N~l~~l~~~~-~~~~~l~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3          89 FNALESLSWKT-VQGLSLQELVLSGNPLHCSCAL  121 (156)
T ss_dssp             SSCCSCCCSTT-TCSCCCCEEECCSSCCCCCGGG
T ss_pred             CCCCCCCCHHH-HCCCCCCCCCCCCCCCCCCCHH
T ss_conf             78785157456-3353212433579863388117

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.8e-17  Score=100.89  Aligned_cols=87  Identities=21%  Similarity=0.153  Sum_probs=35.5

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             16999997996989878973321478999998997698314444591002899999899599987999887310001379
Q 001719          131 LSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLST  210 (1021)
Q Consensus       131 l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~  210 (1021)
                      +.+...+|+|+|++|+++.. +..+..+++|++|++++|.+. .++  .+..+++|++|++++|.+....+.    .+..
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~-~l~--~~~~l~~L~~L~ls~N~i~~l~~~----~~~~   85 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIR-KLD--GFPLLRRLKTLLVNNNRICRIGEG----LDQA   85 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCC-EEC--CCCCCSSCCEEECCSSCCCEECSC----HHHH
T ss_pred             CCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCEEECCCCCCC-CCC--CCCCCCCHHHHHCCCCCCCCCCCC----CCCC
T ss_conf             16857484897889978865-762004145998989799787-647--744576130643102134577763----2233


Q ss_pred             CCCCCEEECCCCCCC
Q ss_conf             999897888899798
Q 001719          211 LSNLKFLRLDYNSFN  225 (1021)
Q Consensus       211 l~~L~~L~L~~n~i~  225 (1021)
                      +++|++|++++|.+.
T Consensus        86 l~~L~~L~L~~N~i~  100 (162)
T d1a9na_          86 LPDLTELILTNNSLV  100 (162)
T ss_dssp             CTTCCEEECCSCCCC
T ss_pred             CCCCCCCEECCCCCC
T ss_conf             453443420300016

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=3.4e-16  Score=94.42  Aligned_cols=100  Identities=29%  Similarity=0.321  Sum_probs=39.8

Q ss_pred             EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             99698987897332147899999899769831444459100289999989959998799988731000137999989788
Q 001719          139 FLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLR  218 (1021)
Q Consensus       139 ~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~  218 (1021)
                      +|++++|.++..  +.++.+++|++|++++|.++ .+|. .++.+++|++|++++|.++...      .+..+++|++++
T Consensus         2 ~L~Ls~n~l~~l--~~l~~l~~L~~L~ls~N~l~-~lp~-~~~~l~~L~~L~l~~N~i~~l~------~~~~l~~L~~L~   71 (124)
T d1dcea3           2 VLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDNALENVD------GVANLPRLQELL   71 (124)
T ss_dssp             EEECTTSCCSSC--CCGGGGTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCCCCG------GGTTCSSCCEEE
T ss_pred             EEECCCCCCCCC--CCCCCCCCCCEEECCCCCCC-CCHH-HHHHHHCCCCCCCCCCCCCCCC------CCCCCCCCCEEE
T ss_conf             898689989887--10105898898979787168-6521-5655431354532432112357------412335557688


Q ss_pred             CCCCCCCCCC-CHHCCCCCCCCEEECCCCCC
Q ss_conf             8899798863-00003999987897589637
Q 001719          219 LDYNSFNSSI-FSSLGGLSSLRILSLADNRF  248 (1021)
Q Consensus       219 L~~n~i~~~~-~~~l~~l~~L~~L~Ls~n~l  248 (1021)
                      +++|.+.... ...+..+++|++|++++|.+
T Consensus        72 l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          72 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             CCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CCCCCCCCCCCCHHHCCCCCCCEEECCCCCC
T ss_conf             8898658888825653799999998979968

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.66  E-value=1.5e-18  Score=106.33  Aligned_cols=15  Identities=53%  Similarity=0.844  Sum_probs=5.0

Q ss_pred             CCCCCCEEECCCCCC
Q ss_conf             999998997698314
Q 001719          157 GLSSLRILSLADNRL  171 (1021)
Q Consensus       157 ~l~~L~~L~Ls~n~l  171 (1021)
                      ++++|++|++++|.+
T Consensus        68 ~l~~L~~L~Ls~N~i   82 (198)
T d1m9la_          68 GMENLRILSLGRNLI   82 (198)
T ss_dssp             HHTTCCEEECCEEEE
T ss_pred             CCCCCCCHHHCCCCC
T ss_conf             782535734135343

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1e-13  Score=81.90  Aligned_cols=82  Identities=18%  Similarity=0.241  Sum_probs=32.2

Q ss_pred             CCEEECCCCE-ECCCCCCCCCCCCCCCEEECCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             5479911242-058692012588779889767896754300001388888888686862877798123269999889810
Q 001719          819 MSGIDLSCNK-LTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVA  897 (1021)
Q Consensus       819 L~~L~Ls~N~-l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls  897 (1021)
                      ++.|++++|+ ++...+..|.++++|+.|+|++|+|+.+.|.+|..+++|+.|+|++|+|+. +|........|+.|+++
T Consensus        33 l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~~~~l~~L~L~  111 (156)
T d2ifga3          33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQGLSLQELVLS  111 (156)
T ss_dssp             CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC-CCSTTTCSCCCCEEECC
T ss_pred             CCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCC-CCHHHHCCCCCCCCCCC
T ss_conf             57431689866443692122566666721620212477420111245543333226787851-57456335321243357


Q ss_pred             CCCC
Q ss_conf             8801
Q 001719          898 NNNL  901 (1021)
Q Consensus       898 ~N~l  901 (1021)
                      +|.+
T Consensus       112 ~Np~  115 (156)
T d2ifga3         112 GNPL  115 (156)
T ss_dssp             SSCC
T ss_pred             CCCC
T ss_conf             9863

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.7e-11  Score=69.74  Aligned_cols=10  Identities=40%  Similarity=0.481  Sum_probs=3.1

Q ss_pred             CCEEECCCCC
Q ss_conf             9899599987
Q 001719          186 LEELDMSYNA  195 (1021)
Q Consensus       186 L~~L~Ls~n~  195 (1021)
                      |++|+|++|+
T Consensus        67 L~~L~Ls~N~   76 (162)
T d1koha1          67 LLSLNLSNNR   76 (162)
T ss_dssp             CCCCCCCSSC
T ss_pred             CCEEECCCCC
T ss_conf             7886377766

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.79  E-value=2.1e-09  Score=60.20  Aligned_cols=10  Identities=10%  Similarity=0.348  Sum_probs=3.9

Q ss_pred             CCCCEEECCC
Q ss_conf             8998896989
Q 001719          107 QQLESLDLSW  116 (1021)
Q Consensus       107 ~~L~~LdLs~  116 (1021)
                      +.|++|+|++
T Consensus        15 ~~L~~L~L~~   24 (167)
T d1pgva_          15 TDLKEVNINN   24 (167)
T ss_dssp             SSCCEEECTT
T ss_pred             CCCCEEEECC
T ss_conf             9981978279

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.29  E-value=9.4e-08  Score=51.89  Aligned_cols=115  Identities=15%  Similarity=0.100  Sum_probs=0.0

Q ss_pred             CCCCCCCEEECCC-CCCCCC----CCCCCCCCCCCCEEECCCCCCCCC----CCHHCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf             6999997996989-878973----321478999998997698314444----5910028999998995999879998873
Q 001719          132 SRLNNLKFLLLDS-NYFNNS----IFSSLGGLSSLRILSLADNRLNGS----IDIKGLDSLSNLEELDMSYNAIDNLVVP  202 (1021)
Q Consensus       132 ~~l~~L~~L~Ls~-n~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----i~~~~l~~l~~L~~L~Ls~n~l~~~~~~  202 (1021)
                      .+.+.|++|++++ +.++..    +...+...++|++|++++|.+...    +.. .+...+.++.++++.|.+......
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~-~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE-MLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHH-HHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHH-HHHHCCCCHHHHHCCCCCCCHHHH
T ss_conf             5599986887689999898999999988841982574301589611778999998-775212210121025432201478


Q ss_pred             CCCCCCCCCCCCCE--EECCCCCCCC----CCCHHCCCCCCCCEEECCCCC
Q ss_conf             10001379999897--8888997988----630000399998789758963
Q 001719          203 QGLERLSTLSNLKF--LRLDYNSFNS----SIFSSLGGLSSLRILSLADNR  247 (1021)
Q Consensus       203 ~~~~~l~~l~~L~~--L~L~~n~i~~----~~~~~l~~l~~L~~L~Ls~n~  247 (1021)
                      .....+...++|+.  |+++.|.+..    .+...+...+.|+.|++..+.
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf             899999848652477321677867679999999999849984788581898