Citrus Sinensis ID: 001721
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1020 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FN03 | 440 | Ultraviolet-B receptor UV | no | no | 0.300 | 0.697 | 0.381 | 8e-49 | |
| Q15751 | 4861 | Probable E3 ubiquitin-pro | yes | no | 0.349 | 0.073 | 0.345 | 2e-47 | |
| O95714 | 4834 | E3 ubiquitin-protein liga | no | no | 0.351 | 0.074 | 0.330 | 5e-47 | |
| Q4U2R1 | 4836 | E3 ubiquitin-protein liga | yes | no | 0.351 | 0.074 | 0.333 | 6e-47 | |
| Q9VR91 | 4912 | Probable E3 ubiquitin-pro | yes | no | 0.329 | 0.068 | 0.338 | 7e-43 | |
| Q5GLZ8 | 1057 | Probable E3 ubiquitin-pro | no | no | 0.361 | 0.349 | 0.307 | 3e-39 | |
| Q5PQN1 | 1057 | Probable E3 ubiquitin-pro | no | no | 0.370 | 0.357 | 0.304 | 5e-39 | |
| Q6PAV2 | 1057 | Probable E3 ubiquitin-pro | no | no | 0.329 | 0.317 | 0.315 | 6e-39 | |
| Q15034 | 1050 | Probable E3 ubiquitin-pro | no | no | 0.298 | 0.289 | 0.342 | 3e-38 | |
| F2Z461 | 1003 | E3 ISG15--protein ligase | no | no | 0.312 | 0.318 | 0.306 | 4e-31 |
| >sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 | Back alignment and function desciption |
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Score = 196 bits (498), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 175/325 (53%), Gaps = 18/325 (5%)
Query: 235 VQNIACGGRHAALVTKQG-EVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACG 293
+ ++ CG H ++ G EV+SWG GRLGHG SD+ P I AL I ++ +ACG
Sbjct: 69 IVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 128
Query: 294 EHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTA 353
+ H AVT+ G++ +WG N N G LG G+ +P+K+ EGI + V+ G HTA
Sbjct: 129 DSHCLAVTMEGEVQSWG-RNQN-GQLGLGDTEDSLVPQKIQ-AFEGIRIKMVAAGAEHTA 185
Query: 354 VVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVG 413
VT G L+ +G G +G LG GDR P V S G + ACG HT +V
Sbjct: 186 AVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISV------ 239
Query: 414 SSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCGHSLTVALTT 473
SG L+T+G G+LGHGD E L+P + AL Q+S G T+ALT+
Sbjct: 240 ------SYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTS 293
Query: 474 TGHVYTMGSPVYGQLGDPKANGKL-PTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTW 532
G +Y G +GQ+G + P +V + V+ ++CG H +T R V+ W
Sbjct: 294 DGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQ-VSCGWRHTLAVTERNNVFAW 352
Query: 533 GKGANGRLGHGDTDDRNFPSLVEAL 557
G+G NG+LG G++ DRNFP ++EAL
Sbjct: 353 GRGTNGQLGIGESVDRNFPKIIEAL 377
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UV-B specific signaling component that acts as UV-B photoreceptor and plays a key role in establishing UV-protective responses in plants. Upon UV-B irradiation, UVR8 undergoes an immediate switch from homodimer to monomer, accumulates in the nucleus, interacts with the photomorphogenic repressor COP1 and regulates the expression of the transcription factor HY5 by associating with chromatin (through histone H2B binding) in the HY5 promoter region. UVR8 is involved in controlling aspects of leaf growth and morphogenesis in response to UV-B, is required for normal progression of endocycle and has a regulatory role in stomatal differentiation. Is required for plant circadian clock response to photomorphogenic UV-B light, partly through the transcriptional activation of responsive clock genes. Promotes photosynthetic efficiency at elevated levels of UV-B. Plays a role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway. The two tryptophans, Trp-285 and Trp-233, serve collectively as the UV-B chromophore. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 | Back alignment and function description |
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| >sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 | Back alignment and function description |
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| >sp|F2Z461|HERC6_MOUSE E3 ISG15--protein ligase Herc6 OS=Mus musculus GN=Herc6 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1020 | ||||||
| 359479203 | 1107 | PREDICTED: uncharacterized protein LOC10 | 0.992 | 0.914 | 0.761 | 0.0 | |
| 255544003 | 1096 | Ran GTPase binding protein, putative [Ri | 0.990 | 0.921 | 0.767 | 0.0 | |
| 255572207 | 1100 | Ran GTPase binding protein, putative [Ri | 0.994 | 0.921 | 0.767 | 0.0 | |
| 224105957 | 1104 | predicted protein [Populus trichocarpa] | 0.991 | 0.915 | 0.765 | 0.0 | |
| 224075844 | 1099 | predicted protein [Populus trichocarpa] | 0.990 | 0.919 | 0.743 | 0.0 | |
| 224055315 | 1109 | predicted protein [Populus trichocarpa] | 0.991 | 0.911 | 0.750 | 0.0 | |
| 357493985 | 1124 | Lateral signaling target protein-like pr | 0.994 | 0.902 | 0.753 | 0.0 | |
| 356554129 | 1106 | PREDICTED: uncharacterized protein LOC10 | 0.993 | 0.915 | 0.75 | 0.0 | |
| 356501403 | 1109 | PREDICTED: uncharacterized protein LOC10 | 0.994 | 0.914 | 0.750 | 0.0 | |
| 356567509 | 1106 | PREDICTED: uncharacterized protein LOC10 | 0.990 | 0.913 | 0.733 | 0.0 |
| >gi|359479203|ref|XP_002279847.2| PREDICTED: uncharacterized protein LOC100248282 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1544 bits (3997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 784/1029 (76%), Positives = 880/1029 (85%), Gaps = 17/1029 (1%)
Query: 5 PIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFTGLKALISRS-HYRKGRAESR 63
PIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWF+GLKALISR H+RK R ESR
Sbjct: 83 PIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRGGHHRKWRTESR 142
Query: 64 SDEVSSVATSPRAHTQRSSPLSSPFGSGGSSQKDGLDPLHLHTSYESPPKNVLDKALSDA 123
SD + S A SPR +T+RSSPL+SPFGS S QKDG D L LH+ YESPPK+V++KA SD
Sbjct: 143 SDGIPSEANSPRTYTRRSSPLNSPFGSADSLQKDGGDHLRLHSPYESPPKSVMEKAFSDV 202
Query: 124 VLYAAPPKVLLPSESACGSVNSLSSGGSDGRTGHLKGLSGDTFRVSLSSAVSSSSQGSGH 183
+LYA PPK PS+SA GSV+SLSSGGSD GH+K ++ D FRVSLSSAVSSSSQGSGH
Sbjct: 203 ILYAVPPKGFFPSDSASGSVHSLSSGGSDSVHGHMKAMTMDAFRVSLSSAVSSSSQGSGH 262
Query: 184 DDGDSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESAVVLDVQNIACGGR 243
DDGD+LGDVFIWGE TGDG+LGGG HR GS G+KMDS +PKA+ESAVVLDVQNIACGGR
Sbjct: 263 DDGDALGDVFIWGEGTGDGVLGGGSHRVGSCFGMKMDSLLPKALESAVVLDVQNIACGGR 322
Query: 244 HAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLS 303
HAALVTKQGE+FSWGEE GGRLGHGVDSDV HPKLID+L N N+ELVACGE+HTCAVTLS
Sbjct: 323 HAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIDSLSNTNIELVACGEYHTCAVTLS 382
Query: 304 GDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFT 363
GD+YTWG NFGLLGHGNE+S W+PK++NGPLEGIHVSS+SCGPWHTAVVTS+GQLFT
Sbjct: 383 GDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSSGQLFT 442
Query: 364 FGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSG 423
FGDGTFGVLGHGD SVS PREV+SLKG RTV +ACGVWHTAAVVE+MVG+ SSSNCSSG
Sbjct: 443 FGDGTFGVLGHGDTKSVSKPREVESLKGHRTVISACGVWHTAAVVEIMVGNPSSSNCSSG 502
Query: 424 KLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCGHSLTVALTTTGHVYTMGSP 483
KLFTWGDGD+GRLGHGDKEA+LVPTCVAALV+PNFC+V+CGHSLTVALTT+GHVYTMGSP
Sbjct: 503 KLFTWGDGDKGRLGHGDKEAKLVPTCVAALVDPNFCRVACGHSLTVALTTSGHVYTMGSP 562
Query: 484 VYGQLGDPKANGKLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKGANGRLGHG 543
VYGQLG+P+A+GKLPTRVEGKL K+FVEEIACG YHVAVLTSRTEVYTWGKGANGRLGHG
Sbjct: 563 VYGQLGNPQADGKLPTRVEGKLAKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHG 622
Query: 544 DTDDRNFPSLVEALKDKQVKSIVCGTSFTAAICLHKWVSGVDQSMCSGCRIPFNFKRKRH 603
DTDDRN P+LVEALKDKQVKSI CGT+FTA ICLHKWVSGVDQSMCSGCR+PFNFKRKRH
Sbjct: 623 DTDDRNSPTLVEALKDKQVKSIACGTNFTATICLHKWVSGVDQSMCSGCRLPFNFKRKRH 682
Query: 604 NCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKLTKATETSSSSHSTVSRRGS 663
NCYNCGLV+CH+CSSKKS+KASMAPNPNKPYRVCDNCF KL KA ET +SS S VSRRG
Sbjct: 683 NCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFSKLRKAIETDASSQSAVSRRGV 742
Query: 664 MNQGFNEAVEHGENFVSRSHVQFG--TSMESLKKVESGSSKRNKKQEFNRTRGLPLPNGV 721
NQG NE ++ E SRS VQ +SMESLK+ ES +SKRNKK EFN +R P+PNG
Sbjct: 743 TNQGLNELIDKDEKLDSRSRVQLARFSSMESLKQAESRTSKRNKKLEFNSSRVSPIPNGG 802
Query: 722 SQ-GNALNNSKSSNPVFGSTKKFFSASLPGSRIMSRATSPTSRRSSPPRATTPTPTLSGL 780
SQ G AL KS NPVFGS+KKFFSAS+PGSRI+SR TSP SRR SPPRA TPTPTL GL
Sbjct: 803 SQWGGAL---KSLNPVFGSSKKFFSASVPGSRIVSRTTSPISRRPSPPRAATPTPTLEGL 859
Query: 781 ASPKIVVDDAKRT----SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEET 836
SPKIVVDDAKRT S+EVIKLR QVE LTRK+QLQE+ELERTT+QLKEA+A+AGEET
Sbjct: 860 TSPKIVVDDAKRTNDSLSQEVIKLRVQVENLTRKAQLQEVELERTTKQLKEAIAIAGEET 919
Query: 837 AKCRAAKDVIKSLTAQLKDMAEMLPVGAVRNSN-----SFHSSPTPAWDVSSAAIEQPSS 891
A+C+AAK+VIKSLTAQLKDMAE LPVGA RN+ S S+P + D+SS +I++ +
Sbjct: 920 ARCKAAKEVIKSLTAQLKDMAERLPVGAARNTKSPSFTSLGSNPASS-DLSSLSIDRING 978
Query: 892 PLTFQGAIPNGSNSLILSNGSDFGDNRSPSQTEASHCEATTKNKNRTMKAEPAQGDEWVE 951
+T Q NGSN +LSNGS +NRS H EAT +N +RT ++E +EWVE
Sbjct: 979 QITSQEPDLNGSNGQLLSNGSSTTNNRSSGHNRLGHLEATIRNGSRTKESEHRNDNEWVE 1038
Query: 952 QDETGVYITLVALPGGLKDLKRVRFSRKKFSEKQAEQWWAANRARVYQQYNVSMVDKSSV 1011
QDE GVYITL +LPGG+KDLKRVRFSRK+FSEKQAEQWWA NRARV+++YNV M+DKSSV
Sbjct: 1039 QDEPGVYITLTSLPGGVKDLKRVRFSRKRFSEKQAEQWWAENRARVHERYNVRMIDKSSV 1098
Query: 1012 SIGREGLAH 1020
+G E LAH
Sbjct: 1099 GVGSEDLAH 1107
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255544003|ref|XP_002513064.1| Ran GTPase binding protein, putative [Ricinus communis] gi|223548075|gb|EEF49567.1| Ran GTPase binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|255572207|ref|XP_002527043.1| Ran GTPase binding protein, putative [Ricinus communis] gi|223533605|gb|EEF35343.1| Ran GTPase binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224105957|ref|XP_002313993.1| predicted protein [Populus trichocarpa] gi|222850401|gb|EEE87948.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224075844|ref|XP_002304793.1| predicted protein [Populus trichocarpa] gi|222842225|gb|EEE79772.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224055315|ref|XP_002298476.1| predicted protein [Populus trichocarpa] gi|222845734|gb|EEE83281.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|357493985|ref|XP_003617281.1| Lateral signaling target protein-like protein [Medicago truncatula] gi|355518616|gb|AET00240.1| Lateral signaling target protein-like protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356554129|ref|XP_003545401.1| PREDICTED: uncharacterized protein LOC100802464 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356501403|ref|XP_003519514.1| PREDICTED: uncharacterized protein LOC100806439 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356567509|ref|XP_003551961.1| PREDICTED: uncharacterized protein LOC100791947 [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1020 | ||||||
| TAIR|locus:505006603 | 1075 | AT5G12350 "AT5G12350" [Arabido | 0.959 | 0.910 | 0.620 | 0.0 | |
| TAIR|locus:2025277 | 1103 | PRAF1 "AT1G76950" [Arabidopsis | 0.688 | 0.636 | 0.499 | 7.4e-231 | |
| TAIR|locus:2165770 | 1073 | AT5G42140 "AT5G42140" [Arabido | 0.556 | 0.529 | 0.537 | 2.2e-229 | |
| TAIR|locus:2086253 | 1045 | AT3G23270 "AT3G23270" [Arabido | 0.478 | 0.466 | 0.562 | 7.3e-197 | |
| TAIR|locus:2079147 | 954 | AT3G47660 "AT3G47660" [Arabido | 0.606 | 0.648 | 0.489 | 1.6e-173 | |
| TAIR|locus:2009739 | 1006 | AT1G65920 [Arabidopsis thalian | 0.434 | 0.440 | 0.501 | 2.3e-158 | |
| TAIR|locus:2163986 | 440 | UVR8 "UVB-RESISTANCE 8" [Arabi | 0.336 | 0.779 | 0.339 | 6.1e-46 | |
| UNIPROTKB|E1BW48 | 4841 | HERC2 "Uncharacterized protein | 0.399 | 0.084 | 0.312 | 3.8e-39 | |
| UNIPROTKB|E1C8K2 | 4841 | HERC2 "Uncharacterized protein | 0.399 | 0.084 | 0.312 | 3.8e-39 | |
| MGI|MGI:103234 | 4836 | Herc2 "hect (homologous to the | 0.398 | 0.083 | 0.312 | 4.9e-39 |
| TAIR|locus:505006603 AT5G12350 "AT5G12350" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 3172 (1121.7 bits), Expect = 0., P = 0.
Identities = 636/1025 (62%), Positives = 736/1025 (71%)
Query: 5 PIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFTGLKALISRSHYRKGRAESRS 64
PIFQRYPRPEKEYQSFSLIY++RSLD+ICKDKDEAEVWFTGLKALIS H R R ESRS
Sbjct: 83 PIFQRYPRPEKEYQSFSLIYSERSLDVICKDKDEAEVWFTGLKALISHCHQRNRRTESRS 142
Query: 65 DEVSSVATSPRAHTQRXXXXXXXXXXXXXXQKDGLDPLHLHTSYESPPKNVLDKALSDAV 124
D S A SPR +T+R QKDG + L +H+ +ESPPKN LDKA SD
Sbjct: 143 DGTPSEANSPRTYTRRSSPLHSPFSSNDSLQKDGSNHLRIHSPFESPPKNGLDKAFSDMA 202
Query: 125 LYAAPPKVLLPSESACGSVNSLSSGGSDGRTGHLKGLSGDTFRVXXXXXXXXXXXXXXXX 184
LYA PPK PS+SA SV+S GGSD GH++G+ D FRV
Sbjct: 203 LYAVPPKGFYPSDSATISVHS---GGSDSMHGHMRGMGMDAFRVSMSSAVSSSSHGSGHD 259
Query: 185 XXXXXXXVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESAVVLDVQNIACGGRH 244
VFIWGE G+G+LGGG R GS +KMDS +PKA+ES +VLDVQNIACGG+H
Sbjct: 260 DGDALGDVFIWGEGIGEGVLGGGNRRVGSSFDIKMDSLLPKALESTIVLDVQNIACGGQH 319
Query: 245 AALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSG 304
A LVTKQGE FSWGEE GRLGHGVDS++ PKLIDAL N+ELVACGE H+CAVTLSG
Sbjct: 320 AVLVTKQGESFSWGEESEGRLGHGVDSNIQQPKLIDALNTTNIELVACGEFHSCAVTLSG 379
Query: 305 DMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTF 364
D+YTWG + FG+LGHGNE+S W+PK++N LEGIHVSS++CGP+HTAVVTSAGQLFTF
Sbjct: 380 DLYTWGKGD--FGVLGHGNEVSHWVPKRVNFLLEGIHVSSIACGPYHTAVVTSAGQLFTF 437
Query: 365 GDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVGXXXXXXXXXGK 424
GDGTFGVLGHGD+ SV PREVDSLKGLRTVRAACGVWHTAAVVEVMVG GK
Sbjct: 438 GDGTFGVLGHGDKKSVFIPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGK 497
Query: 425 LFTWXXXXXXXXXXXXKEARLVPTCVAALVEPNFCQVSCGHSLTVALTTTGHVYTMGSPV 484
LFTW KE +LVPTCVAALVEPNFCQV+CGHSLTVALTT+GHVYTMGSPV
Sbjct: 498 LFTWGDGDKGRLGHGNKEPKLVPTCVAALVEPNFCQVACGHSLTVALTTSGHVYTMGSPV 557
Query: 485 YGQLGDPKANGKLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKGANGRLGHGD 544
YGQLG+ A+GK P RVEGKL K+FVEEIACG YHVAVLTSRTEVYTWGKG+NGRLGHGD
Sbjct: 558 YGQLGNSHADGKTPNRVEGKLHKSFVEEIACGAYHVAVLTSRTEVYTWGKGSNGRLGHGD 617
Query: 545 TDDRNFPSLVEALKDKQVKSIVCGTSFTAAICLHKWVSGVDQSMCSGCRIPFNFKRKRHN 604
DDRN P+LVE+LKDKQVKSI CGT+FTAA+C+H+W SG+DQSMCSGCR PF+FKRKRHN
Sbjct: 618 VDDRNSPTLVESLKDKQVKSIACGTNFTAAVCIHRWASGMDQSMCSGCRQPFSFKRKRHN 677
Query: 605 CYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKLTKATEXXXXXXXXXXXXXXM 664
CYNCGLV+CH+C+SKKS+KA MAPNPNKPYRVCD CF KL K E +
Sbjct: 678 CYNCGLVFCHSCTSKKSLKACMAPNPNKPYRVCDKCFNKLKKTMETDPSSHSSLSRRGSI 737
Query: 665 NQGFNEAVEHGENFVSRSHVQFG--TSMESLKKVESGSSKRNKKQEFNRTRGLPLPNGVS 722
NQG ++ ++ + F SRS Q + MES+++V+S K+NKK EFN +R P+P+G S
Sbjct: 738 NQG-SDPIDKDDKFDSRSDGQLARFSLMESMRQVDS-RHKKNKKYEFNSSRVSPIPSGSS 795
Query: 723 QGNALNNSKSSNPVFGSTKKFFSASLPGSRIMXXXXXXXXXXXXXXXXXXXXXXLSGLAS 782
Q ALN +KS NPVFG++KKFFSAS+PGSRI+ LSGLA+
Sbjct: 796 QRGALNIAKSFNPVFGASKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLSGLAT 855
Query: 783 PKIVVDDAKRT----SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 838
PK VVDD KRT S+EV+KLR+QVE LTRK+QLQE+ELERTT+QLKEALA+ EET +
Sbjct: 856 PKFVVDDTKRTNDNLSQEVVKLRSQVESLTRKAQLQEVELERTTKQLKEALAITNEETTR 915
Query: 839 CRAAKDVIKSLTAQLKDMAEMLPVGAVR------NSNSFHSSP--TPAWDVSSAAIEQPS 890
C+AAK+VIKSLTAQLKDMAE LPVG+ R + NSF SSP +++ + A Q S
Sbjct: 916 CKAAKEVIKSLTAQLKDMAERLPVGSARTVKSPPSLNSFGSSPGRIDPFNILNQANSQES 975
Query: 891 SPLTFQGAIPXXXXXXXXXXXXDFGDNRSPSQTEASHCEATTKNKNRTMKAEPAQGDEWV 950
P P FG+ EAT + +N EWV
Sbjct: 976 EPNGI--TTPMFSNGTMTPA---FGNG-----------EATNEARNEK---------EWV 1010
Query: 951 EQDETGVYITLVALPGGLKDLKRVRFSRKKFSEKQAEQWWAANRARVYQQYNVSMVDKSS 1010
EQDE GVYITL AL GG +DLKRVRFSRK+FSE QAEQWWA NR RVY+QYNV MVDK+S
Sbjct: 1011 EQDEPGVYITLTALAGGARDLKRVRFSRKRFSEIQAEQWWADNRGRVYEQYNVRMVDKAS 1070
Query: 1011 VSIGR 1015
+ R
Sbjct: 1071 EDLPR 1075
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| TAIR|locus:2025277 PRAF1 "AT1G76950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2165770 AT5G42140 "AT5G42140" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2086253 AT3G23270 "AT3G23270" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2079147 AT3G47660 "AT3G47660" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2009739 AT1G65920 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BW48 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1C8K2 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:103234 Herc2 "hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00030935001 | SubName- Full=Chromosome undetermined scaffold_53, whole genome shotgun sequence; (1124 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1020 | |||
| COG5184 | 476 | COG5184, ATS1, Alpha-tubulin suppressor and relate | 1e-30 | |
| pfam08381 | 59 | pfam08381, BRX, Transcription factor regulating ro | 1e-30 | |
| COG5184 | 476 | COG5184, ATS1, Alpha-tubulin suppressor and relate | 1e-29 | |
| COG5184 | 476 | COG5184, ATS1, Alpha-tubulin suppressor and relate | 9e-29 | |
| pfam01363 | 68 | pfam01363, FYVE, FYVE zinc finger | 7e-22 | |
| smart00064 | 68 | smart00064, FYVE, Protein present in Fab1, YOTB, V | 7e-20 | |
| cd00065 | 57 | cd00065, FYVE, FYVE domain; Zinc-binding domain; t | 2e-18 | |
| cd13365 | 115 | cd13365, PH_PLC_plant-like, Plant-like Phospholipa | 7e-17 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 1e-13 | |
| pfam13713 | 39 | pfam13713, BRX_N, Transcription factor BRX N-termi | 1e-13 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 2e-13 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 5e-12 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 6e-11 | |
| cd01248 | 108 | cd01248, PH_PLC_ELMO1, Phospholipase C and Engulfm | 8e-10 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 4e-09 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 3e-07 | |
| cd13363 | 117 | cd13363, PH_PLC_delta, Phospholipase C-delta (PLC- | 6e-06 | |
| pfam12718 | 143 | pfam12718, Tropomyosin_1, Tropomyosin like | 2e-05 | |
| cd13364 | 108 | cd13364, PH_PLC_eta, Phospholipase C-eta (PLC-eta) | 4e-05 | |
| pfam13540 | 30 | pfam13540, RCC1_2, Regulator of chromosome condens | 3e-04 | |
| pfam13540 | 30 | pfam13540, RCC1_2, Regulator of chromosome condens | 5e-04 | |
| pfam13540 | 30 | pfam13540, RCC1_2, Regulator of chromosome condens | 8e-04 | |
| pfam00261 | 237 | pfam00261, Tropomyosin, Tropomyosin | 0.001 | |
| pfam13540 | 30 | pfam13540, RCC1_2, Regulator of chromosome condens | 0.002 | |
| pfam12718 | 143 | pfam12718, Tropomyosin_1, Tropomyosin like | 0.003 |
| >gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 1e-30
Identities = 84/364 (23%), Positives = 133/364 (36%), Gaps = 44/364 (12%)
Query: 238 IACGGRHAALVTKQGEVFSWGEELGGRLGHGV--DSDVSHPKLIDALKNINVEL------ 289
IACGG H+ + G ++SWG+ G LG + D + +ID
Sbjct: 109 IACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPG 168
Query: 290 ------------VACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKK--LNG 335
+ACG + +T G +Y+WG C G + L
Sbjct: 169 GSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKV 228
Query: 336 PLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTV 395
P + I ++ G H +T+ G+++ +G G LG + V +R +
Sbjct: 229 PKKAI--VQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNI 286
Query: 396 -RAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLV----PTCV 450
ACG H+ A+ E G+++ WG G+LG G P
Sbjct: 287 KYVACGKDHSLALDE------------DGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYK 334
Query: 451 AALVEPNFCQVSCGHSLTVALTTTGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFV 510
L C +S G S ++ L G +Y G GQLG + + +
Sbjct: 335 QLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAIKL 394
Query: 511 EEIACGDYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNFPSLVEALKDKQVKSIV---C 567
E++ACG +H T VY+WG G +G LG+G + + +I+
Sbjct: 395 EQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSGHNIILAGY 454
Query: 568 GTSF 571
G F
Sbjct: 455 GNQF 458
|
Length = 476 |
| >gnl|CDD|203924 pfam08381, BRX, Transcription factor regulating root and shoot growth via Pin3 | Back alignment and domain information |
|---|
| >gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|216454 pfam01363, FYVE, FYVE zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|214499 smart00064, FYVE, Protein present in Fab1, YOTB, Vac1, and EEA1 | Back alignment and domain information |
|---|
| >gnl|CDD|238022 cd00065, FYVE, FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1; | Back alignment and domain information |
|---|
| >gnl|CDD|241519 cd13365, PH_PLC_plant-like, Plant-like Phospholipase C (PLC) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|205888 pfam13713, BRX_N, Transcription factor BRX N-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|241279 cd01248, PH_PLC_ELMO1, Phospholipase C and Engulfment and cell motility protein 1 pleckstrin homology domain | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|241517 cd13363, PH_PLC_delta, Phospholipase C-delta (PLC-delta) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >gnl|CDD|205039 pfam12718, Tropomyosin_1, Tropomyosin like | Back alignment and domain information |
|---|
| >gnl|CDD|241518 cd13364, PH_PLC_eta, Phospholipase C-eta (PLC-eta) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|189476 pfam00261, Tropomyosin, Tropomyosin | Back alignment and domain information |
|---|
| >gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|205039 pfam12718, Tropomyosin_1, Tropomyosin like | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1020 | |||
| COG5184 | 476 | ATS1 Alpha-tubulin suppressor and related RCC1 dom | 100.0 | |
| KOG1427 | 443 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| COG5184 | 476 | ATS1 Alpha-tubulin suppressor and related RCC1 dom | 100.0 | |
| KOG1427 | 443 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| PF08381 | 59 | BRX: Transcription factor regulating root and shoo | 99.97 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 99.93 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 99.93 | |
| KOG1428 | 3738 | consensus Inhibitor of type V adenylyl cyclases/Ne | 99.85 | |
| KOG1428 | 3738 | consensus Inhibitor of type V adenylyl cyclases/Ne | 99.82 | |
| PF13713 | 39 | BRX_N: Transcription factor BRX N-terminal domain | 99.32 | |
| PF01363 | 69 | FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc f | 99.15 | |
| PF00415 | 51 | RCC1: Regulator of chromosome condensation (RCC1) | 99.09 | |
| KOG1818 | 634 | consensus Membrane trafficking and cell signaling | 99.08 | |
| KOG0941 | 850 | consensus E3 ubiquitin protein ligase [Posttransla | 99.06 | |
| smart00064 | 68 | FYVE Protein present in Fab1, YOTB, Vac1, and EEA1 | 99.01 | |
| PF00415 | 51 | RCC1: Regulator of chromosome condensation (RCC1) | 98.96 | |
| KOG1729 | 288 | consensus FYVE finger containing protein [General | 98.84 | |
| PTZ00303 | 1374 | phosphatidylinositol kinase; Provisional | 98.79 | |
| KOG1819 | 990 | consensus FYVE finger-containing proteins [General | 98.78 | |
| KOG0941 | 850 | consensus E3 ubiquitin protein ligase [Posttransla | 98.76 | |
| PF13540 | 30 | RCC1_2: Regulator of chromosome condensation (RCC1 | 98.7 | |
| PF13540 | 30 | RCC1_2: Regulator of chromosome condensation (RCC1 | 98.65 | |
| cd00065 | 57 | FYVE FYVE domain; Zinc-binding domain; targets pro | 98.52 | |
| PF12814 | 123 | Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin | 98.12 | |
| KOG1841 | 1287 | consensus Smad anchor for receptor activation [Def | 97.94 | |
| KOG1842 | 505 | consensus FYVE finger-containing protein [General | 97.93 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 97.69 | |
| cd01248 | 115 | PH_PLC Phospholipase C (PLC) pleckstrin homology ( | 97.55 | |
| KOG1843 | 473 | consensus Uncharacterized conserved protein [Funct | 97.22 | |
| KOG4424 | 623 | consensus Predicted Rho/Rac guanine nucleotide exc | 95.88 | |
| KOG1811 | 1141 | consensus Predicted Zn2+-binding protein, contains | 94.12 | |
| KOG0230 | 1598 | consensus Phosphatidylinositol-4-phosphate 5-kinas | 91.63 | |
| PF02403 | 108 | Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom | 90.15 | |
| PRK15396 | 78 | murein lipoprotein; Provisional | 89.99 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 88.53 | |
| KOG0943 | 3015 | consensus Predicted ubiquitin-protein ligase/hyper | 88.38 | |
| PRK09973 | 85 | putative outer membrane lipoprotein; Provisional | 88.19 | |
| PF04728 | 56 | LPP: Lipoprotein leucine-zipper; InterPro: IPR0068 | 88.08 | |
| PF02318 | 118 | FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 | 88.02 | |
| PF03962 | 188 | Mnd1: Mnd1 family; InterPro: IPR005647 This family | 86.5 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 86.23 | |
| PLN02153 | 341 | epithiospecifier protein | 85.44 | |
| KOG0943 | 3015 | consensus Predicted ubiquitin-protein ligase/hyper | 84.22 | |
| TIGR02449 | 65 | conserved hypothetical protein TIGR02449. Members | 82.88 | |
| KOG3669 | 705 | consensus Uncharacterized conserved protein, conta | 82.81 | |
| PF04849 | 306 | HAP1_N: HAP1 N-terminal conserved region; InterPro | 82.73 | |
| PF07106 | 169 | TBPIP: Tat binding protein 1(TBP-1)-interacting pr | 82.31 | |
| PF02403 | 108 | Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom | 81.5 | |
| PRK05431 | 425 | seryl-tRNA synthetase; Provisional | 81.16 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 80.95 | |
| PF12325 | 120 | TMF_TATA_bd: TATA element modulatory factor 1 TATA | 80.38 | |
| PF03904 | 230 | DUF334: Domain of unknown function (DUF334); Inter | 80.23 |
| >COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-46 Score=417.57 Aligned_cols=367 Identities=26% Similarity=0.451 Sum_probs=299.0
Q ss_pred cccccCCCCcEEEEcCCCCCCccCCCCCcCCccccccccccceEEeccc--CCCCEEEEEecCcEEEEEEcCCeEEEEeC
Q 001721 182 GHDDGDSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESA--VVLDVQNIACGGRHAALVTKQGEVFSWGE 259 (1020)
Q Consensus 182 ~~~~lds~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~--~~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~ 259 (1020)
+......-++||+||.|. .++||+|.+. ..+..|+.+... ....|++++||+.|+++|+.||.||+||.
T Consensus 60 ~~~~~~~~~~v~~~Gsn~-~~eLGlg~de--------~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~ 130 (476)
T COG5184 60 HTHLLVKMASVYSWGSNG-MNELGLGNDE--------TKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGD 130 (476)
T ss_pred chhhhhheeeeEEEecCc-ceeeccCCch--------hcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEecc
Confidence 344678889999999999 9999999874 346788887765 56899999999999999999999999999
Q ss_pred CCCCccCCCCC----------------CCCCcceEeec----cCCCcEEEEEecCCEEEEEEeCCcEEEeCCCCCCCccc
Q 001721 260 ELGGRLGHGVD----------------SDVSHPKLIDA----LKNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLL 319 (1020)
Q Consensus 260 N~~GqLG~g~~----------------~~~~~P~~V~~----l~~~~I~~VacG~~ht~aLT~dG~VysWG~n~~~~GqL 319 (1020)
|..|+||.... .....|..|+. ....+|++++||++++++|+++|+||.||.+ ..+.+
T Consensus 131 N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~--r~~e~ 208 (476)
T COG5184 131 NDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTF--RCGEL 208 (476)
T ss_pred CcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCc--ccccc
Confidence 99999997661 12467777776 2234799999999999999999999999988 55666
Q ss_pred CCCCCc--c----eecceeeCCCCCCCcEEEEEecCCeEEEEEcCCcEEEeccCCCCcCCCCCCcccccceeeccCCCC-
Q 001721 320 GHGNEM--S----LWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGL- 392 (1020)
Q Consensus 320 G~g~~~--~----~~~P~~I~~~l~~~~Iv~VacG~~Hs~aLt~~G~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~- 392 (1020)
+.+... . .++|.++. ...|+++++|.+|.++|+++|+||+||+|.+||||.........+..+..+...
T Consensus 209 ~~g~~~~s~k~~~~~~p~~v~----~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~ 284 (476)
T COG5184 209 GQGSYKNSQKTSIQFTPLKVP----KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIR 284 (476)
T ss_pred ccccccccccceeeeeeeecC----chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhh
Confidence 655322 2 24455443 357999999999999999999999999999999999887777666666544333
Q ss_pred eEEEEecCCceEEEEEEeeecCcccccCCCCcEEEecCCCCCCcCCCCC----CcceecEEeeccCCCCeeEEEeeCcEE
Q 001721 393 RTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDK----EARLVPTCVAALVEPNFCQVSCGHSLT 468 (1020)
Q Consensus 393 ~I~~IacG~~ht~aLtE~~~~~~~~~~~~~G~Ly~WG~n~~GQLG~g~~----~~~~~Pt~V~~l~~~~I~~Ia~G~~ht 468 (1020)
.|..|+||.+|++||. .+|++|+||.|.+||||.+.. .....|+....+.+..|..|++|..|+
T Consensus 285 ~i~~vacG~~h~~al~------------~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~ 352 (476)
T COG5184 285 NIKYVACGKDHSLALD------------EDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHS 352 (476)
T ss_pred hhhhcccCcceEEEEc------------CCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceE
Confidence 3688999999999998 599999999999999999821 224566666667777899999999999
Q ss_pred EEEecCCcEEEEeCCCCCCCCCCCCCC---CcceeeccccCCCcEEEEEecCcEEEEEeCCCeEEEEeCCCCCCCCCCCC
Q 001721 469 VALTTTGHVYTMGSPVYGQLGDPKANG---KLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKGANGRLGHGDT 545 (1020)
Q Consensus 469 laLT~dG~Vy~wG~N~~GQLG~~~~~~---~~P~~v~~~l~~~~I~~Ia~G~~HslaLTsdG~VytWG~n~~GQLG~G~~ 545 (1020)
++|..+|.||.||.+..||||.+.... ..|..+. ....+.+|+||..|.++.+.+|+||.||+|.+|+||.|+.
T Consensus 353 l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls---~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~ 429 (476)
T COG5184 353 LILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLS---VAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPK 429 (476)
T ss_pred EEEecCceEEEecCCccccccCcccceeecCCccccc---cccceEEEEecCccceeeccCCceEEecCchhhhccCCch
Confidence 999999999999999999999987332 2233222 1246999999999999999999999999999999999984
Q ss_pred -CCcccCceeec--ccccceEEEEecCCcceeeeee
Q 001721 546 -DDRNFPSLVEA--LKDKQVKSIVCGTSFTAAICLH 578 (1020)
Q Consensus 546 -~~~~~P~~V~~--l~~~~V~~IacG~~~T~aL~~~ 578 (1020)
++...|+++.. +....++..-||.+++++...+
T Consensus 430 ~~~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~~~ 465 (476)
T COG5184 430 EADVLVPTLIRQPLLSGHNIILAGYGNQFSVIEETM 465 (476)
T ss_pred hhhccccccccccccCCCceEEeccCcceEEEecch
Confidence 56677888873 6777888888888777766543
|
|
| >KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] | Back alignment and domain information |
|---|
| >COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] | Back alignment and domain information |
|---|
| >PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members | Back alignment and domain information |
|---|
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
| >KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13713 BRX_N: Transcription factor BRX N-terminal domain | Back alignment and domain information |
|---|
| >PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) | Back alignment and domain information |
|---|
| >KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1 | Back alignment and domain information |
|---|
| >PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) | Back alignment and domain information |
|---|
| >KOG1729 consensus FYVE finger containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >PTZ00303 phosphatidylinositol kinase; Provisional | Back alignment and domain information |
|---|
| >KOG1819 consensus FYVE finger-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B | Back alignment and domain information |
|---|
| >PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B | Back alignment and domain information |
|---|
| >cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1; | Back alignment and domain information |
|---|
| >PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis | Back alignment and domain information |
|---|
| >KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms] | Back alignment and domain information |
|---|
| >KOG1842 consensus FYVE finger-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
| >cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >KOG1843 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >PRK15396 murein lipoprotein; Provisional | Back alignment and domain information |
|---|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
| >KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK09973 putative outer membrane lipoprotein; Provisional | Back alignment and domain information |
|---|
| >PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP | Back alignment and domain information |
|---|
| >PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A | Back alignment and domain information |
|---|
| >PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
| >KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >TIGR02449 conserved hypothetical protein TIGR02449 | Back alignment and domain information |
|---|
| >KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] | Back alignment and domain information |
|---|
| >PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues | Back alignment and domain information |
|---|
| >PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences | Back alignment and domain information |
|---|
| >PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >PRK05431 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] | Back alignment and domain information |
|---|
| >PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1020 | ||||
| 4d9s_A | 406 | Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv | 5e-44 | ||
| 4dnv_A | 370 | Crystal Structure Of The W285f Mutant Of Uvb-Resist | 7e-44 | ||
| 4dnw_A | 374 | Crystal Structure Of Uvb-Resistance Protein Uvr8 Le | 1e-43 | ||
| 4dnu_A | 372 | Crystal Structure Of The W285a Mutant Of Uvb-Resist | 5e-43 | ||
| 3kci_A | 389 | The Third Rld Domain Of Herc2 Length = 389 | 2e-35 | ||
| 3kci_A | 389 | The Third Rld Domain Of Herc2 Length = 389 | 2e-15 | ||
| 3mvd_K | 423 | Crystal Structure Of The Chromatin Factor Rcc1 In C | 2e-17 | ||
| 1a12_A | 413 | Regulator Of Chromosome Condensation (Rcc1) Of Huma | 4e-14 | ||
| 1i2m_B | 402 | Ran-Rcc1-So4 Complex Length = 402 | 8e-14 | ||
| 3of7_A | 473 | The Crystal Structure Of Prp20p From Saccharomyces | 6e-08 | ||
| 2yqm_A | 89 | Solution Structure Of The Fyve Domain In Zinc Finge | 3e-07 | ||
| 2yw8_A | 82 | Crystal Structure Of Human Run And Fyve Domain-Cont | 5e-07 | ||
| 1joc_A | 125 | Eea1 Homodimer Of C-Terminal Fyve Domain Bound To I | 5e-07 | ||
| 1dvp_A | 220 | Crystal Structure Of The Vhs And Fyve Tandem Domain | 2e-06 | ||
| 3zyq_A | 226 | Crystal Structure Of The Tandem Vhs And Fyve Domain | 8e-06 | ||
| 1hyi_A | 65 | Solution Structure Of The Eea1 Fyve Domain Complexe | 1e-05 | ||
| 3mpx_A | 434 | Crystal Structure Of The Dh And Ph-1 Domains Of Hum | 5e-05 | ||
| 3t7l_A | 90 | Crystal Structure Of The Fyve Domain Of Endofin (Zf | 2e-04 | ||
| 1z2q_A | 84 | High-Resolution Solution Structure Of The Lm5-1 Fyv | 4e-04 | ||
| 1vfy_A | 73 | Phosphatidylinositol-3-Phosphate Binding Fyve Domai | 5e-04 |
| >pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 | Back alignment and structure |
|
| >pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 | Back alignment and structure |
| >pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 | Back alignment and structure |
| >pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 | Back alignment and structure |
| >pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 | Back alignment and structure |
| >pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 | Back alignment and structure |
| >pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 | Back alignment and structure |
| >pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 | Back alignment and structure |
| >pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 | Back alignment and structure |
| >pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 | Back alignment and structure |
| >pdb|2YQM|A Chain A, Solution Structure Of The Fyve Domain In Zinc Finger Fyve Domain-Containing Protein 12 Length = 89 | Back alignment and structure |
| >pdb|2YW8|A Chain A, Crystal Structure Of Human Run And Fyve Domain-Containing Protein Length = 82 | Back alignment and structure |
| >pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol 1,3-Diphosphate Length = 125 | Back alignment and structure |
| >pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of Hrs, A Protein Involved In Membrane Trafficking And Signal Transduction Length = 220 | Back alignment and structure |
| >pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of Hepatocyte Growth Factor-Regulated Tyrosine Kinase Substrate (Hgs-Hrs) At 1.48 A Resolution Length = 226 | Back alignment and structure |
| >pdb|1HYI|A Chain A, Solution Structure Of The Eea1 Fyve Domain Complexed With Inositol 1,3-Bisphosphate Length = 65 | Back alignment and structure |
| >pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5 Length = 434 | Back alignment and structure |
| >pdb|3T7L|A Chain A, Crystal Structure Of The Fyve Domain Of Endofin (Zfyve16) At 1.1a Resolution Length = 90 | Back alignment and structure |
| >pdb|1Z2Q|A Chain A, High-Resolution Solution Structure Of The Lm5-1 Fyve Domain From Leishmania Major Length = 84 | Back alignment and structure |
| >pdb|1VFY|A Chain A, Phosphatidylinositol-3-Phosphate Binding Fyve Domain Of Vps27p Protein From Saccharomyces Cerevisiae Length = 73 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 | Back alignment and structure |
|---|
Score = 420 bits (1082), Expect = e-138
Identities = 141/430 (32%), Positives = 198/430 (46%), Gaps = 45/430 (10%)
Query: 167 RVSLSSAVSSSSQGSGH-----DDGDSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDS 221
+ V S G+ H V WG DG LG G D
Sbjct: 11 VTAPPRKVLIISAGASHSVALLSGDI----VCSWGR-GEDGQLGHG---------DAEDR 56
Query: 222 FVPKAVESAVVLDVQNIACGGRHAALVTKQG-EVFSWGEELGGRLGHGVDSDVSHPKLID 280
P + + + ++ CG H ++ G EV+SWG GRLGHG SD+ P I
Sbjct: 57 PSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIK 116
Query: 281 ALKNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGI 340
AL I ++ +ACG+ H AVT+ G++ +WG N G LG G+ +P+K+ EGI
Sbjct: 117 ALHGIRIKQIACGDSHCLAVTMEGEVQSWG-RN-QNGQLGLGDTEDSLVPQKIQA-FEGI 173
Query: 341 HVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAACG 400
+ V+ G HTA VT G L+ +G G +G LG GDR P V S G + ACG
Sbjct: 174 RIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG 233
Query: 401 VWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQ 460
HT +V SG L+T+G G+LGHGD E L+P + AL Q
Sbjct: 234 WRHTISVSY------------SGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQ 281
Query: 461 VSCGHSLTVALTTTGHVYTMGSPVYGQLGDP-KANGKLPTRVEGKLTKNFVEEIACGDYH 519
+S G T+ALT+ G +Y G +GQ+G + P +V V +++CG H
Sbjct: 282 ISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRF-PDDQKVVQVSCGWRH 340
Query: 520 VAVLTSRTEVYTWGKGANGRLGHGDTDDRNFPSLVEALKDKQVKSIVCGTSFTAAIC--- 576
+T R V+ WG+G NG+LG G++ DRNFP ++EAL G ++
Sbjct: 341 TLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALSV----DGASGQHIESSNIDPS 396
Query: 577 -LHKWVSGVD 585
WVS +
Sbjct: 397 SGKSWVSPAE 406
|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 | Back alignment and structure |
|---|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 | Back alignment and structure |
|---|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 | Back alignment and structure |
|---|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 | Back alignment and structure |
|---|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
| >1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A Length = 125 | Back alignment and structure |
|---|
| >2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A Length = 82 | Back alignment and structure |
|---|
| >1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major} Length = 84 | Back alignment and structure |
|---|
| >1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1 Length = 88 | Back alignment and structure |
|---|
| >3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens} Length = 90 | Back alignment and structure |
|---|
| >1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 84 | Back alignment and structure |
|---|
| >1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Length = 220 | Back alignment and structure |
|---|
| >1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1 Length = 73 | Back alignment and structure |
|---|
| >3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Length = 226 | Back alignment and structure |
|---|
| >1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1 Length = 131 | Back alignment and structure |
|---|
| >3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Length = 434 | Back alignment and structure |
|---|
| >1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1 Length = 120 | Back alignment and structure |
|---|
| >2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Length = 406 | Back alignment and structure |
|---|
| >1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1 Length = 134 | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1020 | ||||
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 2e-38 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 1e-23 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 7e-22 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 1e-15 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 6e-14 | |
| d1joca1 | 64 | g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) | 6e-19 | |
| d1dvpa2 | 72 | g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila me | 4e-18 | |
| d1wfka_ | 88 | g.50.1.1 (A:) Zinc finger FYVE domain containing p | 8e-18 | |
| d1vfya_ | 67 | g.50.1.1 (A:) vps27p protein {Baker's yeast (Sacch | 9e-17 | |
| d1zbdb_ | 124 | g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat | 2e-14 | |
| d1jtdb_ | 273 | b.69.5.2 (B:) beta-lactamase inhibitor protein-II, | 4e-14 | |
| d1jtdb_ | 273 | b.69.5.2 (B:) beta-lactamase inhibitor protein-II, | 4e-12 | |
| d1jtdb_ | 273 | b.69.5.2 (B:) beta-lactamase inhibitor protein-II, | 4e-06 | |
| d1jtdb_ | 273 | b.69.5.2 (B:) beta-lactamase inhibitor protein-II, | 8e-06 | |
| d1y02a2 | 51 | g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger pro | 2e-13 | |
| d1maia_ | 119 | b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus | 7e-11 | |
| d2zkmx3 | 131 | b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human | 2e-08 |
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: Regulator of chromosome condensation RCC1 domain: Regulator of chromosome condensation RCC1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 146 bits (369), Expect = 2e-38
Identities = 97/409 (23%), Positives = 151/409 (36%), Gaps = 50/409 (12%)
Query: 190 GDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESAVVLDVQNIACGGRHAALVT 249
G V G+ G LG G M+ P V DV GG H ++
Sbjct: 15 GLVLTLGQ-GDVGQLGLG--------ENVMERKKPALVSIPE--DVVQAEAGGMHTVCLS 63
Query: 250 KQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTW 309
K G+V+S+G G LG + S V V+ G+ HT A+T G ++ W
Sbjct: 64 KSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLW 123
Query: 310 GGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTF 369
G N G++G M + V V+ G H ++T+ G L+T G G
Sbjct: 124 GSFRDNNGVIGLLEPM--KKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQ 181
Query: 370 GVLGHGDRISVSTPREVD----------------SLKGLRTVRAACGVWHTAAVVEVMVG 413
G LG + + S +R A CG + T A+
Sbjct: 182 GQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAI------ 235
Query: 414 SSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVS--CGHSLTVAL 471
G ++ +G + +LG E+ +P + + V G TV +
Sbjct: 236 ------SHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCM 289
Query: 472 TTTGHVYTMGSPVYGQLGDP--KANGKLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEV 529
+ G Y++G YG+LG +PT + V +ACG +T V
Sbjct: 290 DSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA---VSSVACGASVGYAVTKDGRV 346
Query: 530 YTWGKGANGRLGHGDTDDRNFPSLV--EALKDKQVKSIVCGTSFTAAIC 576
+ WG G N +LG G +D P + + L+++ V S+ G T +
Sbjct: 347 FAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLV 395
|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
| >d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]} Length = 64 | Back information, alignment and structure |
|---|
| >d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 72 | Back information, alignment and structure |
|---|
| >d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 | Back information, alignment and structure |
|---|
| >d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67 | Back information, alignment and structure |
|---|
| >d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 | Back information, alignment and structure |
|---|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 | Back information, alignment and structure |
|---|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 | Back information, alignment and structure |
|---|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 | Back information, alignment and structure |
|---|
| >d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
| >d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 119 | Back information, alignment and structure |
|---|
| >d2zkmx3 b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 131 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1020 | |||
| d1a12a_ | 401 | Regulator of chromosome condensation RCC1 {Human ( | 100.0 | |
| d1a12a_ | 401 | Regulator of chromosome condensation RCC1 {Human ( | 100.0 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 100.0 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 100.0 | |
| d1joca1 | 64 | Eea1 {Human (Homo sapiens) [TaxId: 9606]} | 99.16 | |
| d1wfka_ | 88 | Zinc finger FYVE domain containing protein 19 {Mou | 99.01 | |
| d1dvpa2 | 72 | Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 | 98.91 | |
| d1vfya_ | 67 | vps27p protein {Baker's yeast (Saccharomyces cerev | 98.87 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.27 | |
| d1maia_ | 119 | Phospholipase C delta-1 {Rat (Rattus norvegicus) [ | 98.06 | |
| d1y02a2 | 51 | Rififylin (FYVE-RING finger protein Sakura) {Human | 98.02 | |
| d1zbdb_ | 124 | Effector domain of rabphilin-3a {Rat (Rattus norve | 97.75 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.45 | |
| d2zkmx3 | 131 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 97.25 | |
| d2adza1 | 105 | Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 1 | 80.59 |
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: Regulator of chromosome condensation RCC1 domain: Regulator of chromosome condensation RCC1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=467.40 Aligned_cols=371 Identities=27% Similarity=0.419 Sum_probs=313.6
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCEEEEEECCCEEEEEECC
Q ss_conf 75322288996999939999973578977688666654455560783136889889999548679999829909999389
Q 001721 181 SGHDDGDSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESAVVLDVQNIACGGRHAALVTKQGEVFSWGEE 260 (1020)
Q Consensus 181 s~~~~lds~G~Vy~WG~n~~~GqLG~G~~~~~~~~~~~~~~~~P~~i~s~~~~~V~~Ia~G~~hs~~Lt~dG~VyswG~n 260 (1020)
.|.++++.+|+||+||.|. +||||+|... .+...|.+|..+ .+|++|+||..|+++|+.+|+||+||.|
T Consensus 6 ~h~~~~~~~G~vy~wG~n~-~GqLG~g~~~--------~~~~~P~~v~~~--~~i~~ia~G~~h~~al~~~G~vy~wG~n 74 (401)
T d1a12a_ 6 SHRSHSTEPGLVLTLGQGD-VGQLGLGENV--------MERKKPALVSIP--EDVVQAEAGGMHTVCLSKSGQVYSFGCN 74 (401)
T ss_dssp CCTTCCCCCBEEEEEEECT-TSTTCSCTTC--------CEEEEEEEECCS--SCEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred EEEEEECCCCEEEEEECCC-CCCCCCCCCC--------CEECCCEEECCC--CCEEEEEECCCEEEEEECCCEEEEEECC
T ss_conf 6789997898899996999-8888999988--------650357790899--9929999189889999679989999589
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCEECCEEECCCCCCC
Q ss_conf 99965789897877656850148995999994698799999089399957999888645898986400112217998998
Q 001721 261 LGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGI 340 (1020)
Q Consensus 261 ~~GqLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLT~dG~Vy~WG~n~~~~GqLG~g~~~~~~~P~~I~~~l~~~ 340 (1020)
.+||||++...+...|.++......+|++|+||..|+++++++|.||+||.+....++++.........+.... ....
T Consensus 75 ~~GQLG~g~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 152 (401)
T d1a12a_ 75 DEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDV 152 (401)
T ss_dssp TTSTTCSCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEE--CCCC
T ss_conf 99887744655664235542354220022011100101000345311202145655544666775431001100--1688
Q ss_pred CEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCC-----------CCCCEEEC-----CCCCCEEEEEECCCCEE
Q ss_conf 299998669859999829927983069987578988854-----------33561431-----58898099995188469
Q 001721 341 HVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRIS-----------VSTPREVD-----SLKGLRTVRAACGVWHT 404 (1020)
Q Consensus 341 ~Iv~IAcG~~Hs~alTs~G~VytwG~N~~GQLG~g~~~~-----------~~~P~~V~-----~l~g~~I~~IAcG~~ht 404 (1020)
+|+.|+||..|+++++.+|++|+||.|.+||||.+.... ...|..+. .....+|.+|+||..|+
T Consensus 153 ~i~~i~~g~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~ 232 (401)
T d1a12a_ 153 PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFT 232 (401)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEE
T ss_pred CEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEECCCEE
T ss_conf 50699820352256503785003466876622888753445677555443356520000356777784399999368769
Q ss_pred EEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEECEEEECCCC--CCEEEEEEECCEEEEEECCCCEEEEEC
Q ss_conf 999984315765433799927982289998768999875000078402579--980599730858999965993999919
Q 001721 405 AAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVE--PNFCQVSCGHSLTVALTTTGHVYTMGS 482 (1020)
Q Consensus 405 ~aIte~~~~~~~~~~~s~G~VytWG~n~~GqLG~g~~~~~~~Pt~V~~l~~--~~I~~Va~G~~htvaLT~dG~Vy~wGs 482 (1020)
++|+ .+|++|+||.|.++++|.........+..+..+.. ..++.+++|..|+++|+.+|.||+||.
T Consensus 233 ~~l~------------~~g~v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~ 300 (401)
T d1a12a_ 233 FAIS------------HEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGR 300 (401)
T ss_dssp EEEE------------TTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred EEEE------------CCCEEEEECCCCEECCCCCCCCCCEECCCCCCCCCCCEEEEEEEEECCCEEEECCCCCEEEECC
T ss_conf 9995------------5981865122210203545663100000101235540369998510120135614897888403
Q ss_pred CCCCCCCCCCCCC--CCCEEECCCCCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCEEEC--CC
Q ss_conf 9988889999999--7433531345777479999639479999679919999389999999999998656713411--35
Q 001721 483 PVYGQLGDPKANG--KLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNFPSLVEA--LK 558 (1020)
Q Consensus 483 n~~GQLG~~~~~~--~~P~~v~~~l~~~~V~~Ia~G~~Hs~aLTsdG~VytWG~n~~GQLG~Gd~~~~~~P~~V~~--l~ 558 (1020)
|.+||||.+.... ..|..+.. ...|++|+||.+|++||+++|+||+||.|.+||||+|+..++..|++|.. ++
T Consensus 301 n~~gqlG~g~~~~~~~~P~~i~~---~~~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~~~~~~P~~v~~~~~~ 377 (401)
T d1a12a_ 301 AEYGRLGLGEGAEEKSIPTLISR---LPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLE 377 (401)
T ss_dssp CGGGTTCSCTTCCCEEEEEECCS---SSSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTT
T ss_pred CCCCCCCCCCCCCCCCCCEECCC---CCCEEEEEEECCEEEEEECCCEEEEEECCCCCCCCCCCCCCEECCEEEECCCCC
T ss_conf 34675678862333558888579---998299993088799994899699992599887789999888607896435789
Q ss_pred CCCEEEEEECCCCCEEEEEEC
Q ss_conf 652689981577430163201
Q 001721 559 DKQVKSIVCGTSFTAAICLHK 579 (1020)
Q Consensus 559 ~~~V~~IacG~~hT~aL~~~k 579 (1020)
+.+|.+|+||.+||++|+.+.
T Consensus 378 ~~~v~~v~~G~~hs~~l~~d~ 398 (401)
T d1a12a_ 378 NRVVLSVSSGGQHTVLLVKDK 398 (401)
T ss_dssp TEEEEEEEECSSEEEEEEEEC
T ss_pred CCEEEEEEECCCEEEEEEECC
T ss_conf 988999997524399999799
|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
| >d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
| >d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
| >d2zkmx3 b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2adza1 b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|