Citrus Sinensis ID: 001724

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020
MKPFSPKSLLSLSCSSSSSSPSSPLRIFVAHFSTSSNTSPRRHEEESKNVRVSVWWDFENCNLPAGVNAFKVAHTITAAIRANGIKGPVTITAFGDVVQMSRANQEVLSSTGINIAHVPHGGKNSADRSLLVDLMYWVSQNPPPAHLFLISGDRDFASVLHRLRMNNYNILLASRESASNVLCSAASVMWNWDSLLRKENLAGKHFNQPPDGPYGSWYGHYKGPLLDPFSVAEQPAISRSVEPPEPASDKLRPVPKSVVRQIRYILKSYPEGIFITELRAELSKSPVTIDKDLYGYKKFSRFLLSMPNILRLQPEPDGQFLVYGSTPKAPEPFEIDLGTSNGHDCENGTSNGHVCRNGDRELSESLKLSVDQGLKNGAANGKPSSSPEAVVDQPSRKVQQHPLSSEKENVINAEVQEPLKKVQQPPPMDKNVSSPVAVQEDEPHVLKQDPVNEVVFFKKIWIRWFGGKNGDSDIKSQHIPEKCSDSGDISQKISKKRPEKPLAYGDGKKKKVEEKNIRSPTQDDDLAESVQGKKTAKSAHACGEKSTMSAGVLSQIVNWCKFRRSRPDSDSLSDLSSEKLNQTNSNAQKHAVFLKDSFWSDMESFMKSPRGSVIVSQSRTRKQMAESLKEEGPLVLRDLSECDLLDLVDLMILEKKWVEEYPSEKSPFKLSGLVRKKSSLDHSHAANGLRSIFLNTPSKSDQPKVQKHEEEKQSRKISHAGVPASAINKNPKDRSRNDILADCQKLVDEILKEYPEGYNMRGFRQLFIERYGYHLDIQKLGYQKLGTLLQIMPGVMIESRYMLPSNKVMCSSGLETSDPGFEEADAHHPLSNSDRELLETSKKSDDSDSQWEELGPVSNLSFDRKAVQSGLKGEPVKETETETYPDYEPSVSDDEFSDSGGDASTATQPEGQGKPEVDNEDSSLLQILDSWYSSKEEVDNNKNKSENVDGMVDCSTDGVIPSASSEEATTSATSSGNFALKQRPKKRYSFVSDPLDNEKDKLIDGILGSLKKSGEPRMEG
cccccccccccccccccccccccccHHHHccccccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHcccEEEEEccccccHHHHHcccEEEEHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccccHHHHHHHHccccEEccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHccccccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccccccccEEEcccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccccHHHHHHHccccEEcccccccccccccccccccccccccccccccccccccHHHHHcccccccccccHHHccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccHHHHHHccccccccccccc
ccccccccHHHHcccccccccccccccEEEEEccccccccccccHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHHccccccEEEEEEcccccccHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHcHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccEEEEcccccEEEcccHHHHHHHHHcccccccccccEEEEEcccccccEEEEcccccccEEEccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccEHHHccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccEcHHHccHHHHHHHHHHccccEEEccEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHcHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccEHccHHccHHHcccccccc
mkpfspksllslscsssssspssplRIFVAHfstssntsprrheeesknVRVSVWWDfencnlpagvnAFKVAHTITAAIRangikgpvtiTAFGDVVQMSRANQEVLSstginiahvphggknsaDRSLLVDLMYwvsqnpppahlflISGDRDFASVLHRLRMNNYNILLASRESASNVLCSAASVMWNWDSLLRKEnlagkhfnqppdgpygswyghykgplldpfsvaeqpaisrsveppepasdklrpvpkSVVRQIRYILKSYPEGIFITELRAelskspvtidkdlygYKKFSRFLlsmpnilrlqpepdgqflvygstpkapepfeidlgtsnghdcengtsnghvcrngdrelSESLKLSVDQglkngaangkpssspeavvdqpsrkvqqhplssekeNVINAEVqeplkkvqqpppmdknvsspvavqedephvlkqdpvnevVFFKKIWIRwfggkngdsdiksqhipekcsdsgdisqkiskkrpekplaygdgkkkkveeknirsptqdddlaesvqgkktaksahacgekstmsAGVLSQIVNWckfrrsrpdsdslsdlsseklnqtnsNAQKHAVFLKDsfwsdmesfmksprgsvivsqSRTRKQMAESLKEegplvlrdlsecdllDLVDLMILEKKwveeypsekspfklsglvrkkssldhshaanglrsiflntpsksdqpkvqkheeekqsrkishagvpasainknpkdrsrndiLADCQKLVDEILKEypegynmrgFRQLFIERYGYHLDIQKLGYQKLGTLLqimpgvmiesrymlpsnkvmcssgletsdpgfeeadahhplsnsdrelletskksddsdsqweelgpvsnlsfdrkavqsglkgepvketetetypdyepsvsddefsdsggdastatqpegqgkpevdnedssLLQILDSWYsskeevdnnknksenvdgmvdcstdgvipsasseeattsatssgnfalkqrpkkrysfvsdpldnekdKLIDGILGslkksgeprmeg
mkpfspkslLSLSCSSSSSSPSSPLRIFVAHFstssntsprrheeeskNVRVSVWWDFENCNLPAGVNAFKVAHTITAAIRANGIKGPVTITAFGDVVQMSRANQEVLSSTGiniahvphggkNSADRSLLVDLMYWVSQNPPPAHLFLISGDRDFASVLHRLRMNNYNILLASRESASNVLCSAASVMWNWDSLLRKENLAGKHFNQPPDGPYGSWYGHYKGPLLDPFSVAEQPAISrsveppepasdklrpvpksVVRQIRYILksypegifitelraelskspvtidkdlyGYKKFSRFLLSMPNILRLQPEPDGQFLVYGSTPKAPEPFEIDLGTSNGHDCENGTSNGHVCRNGDRELSESLKLSVDQGLKNgaangkpssspeavvdqpsrkvqqhplssekenvINAEVQeplkkvqqpppmDKNVSSPVAVQEdephvlkqdpvneVVFFKKIWIRWFGGKNGDSDIKSqhipekcsdsgdisqkiskkrpekplaygdgkkkkveeknirsptqdddlaesvqgkktaksahacgekstmsagVLSQIVNWCKFRRSRPDSDSLSDLSSEKlnqtnsnaqKHAVFLKDSFWSDMESFMKsprgsvivsqsrTRKQMAEslkeegplvlrdlsecDLLDLVDLMILEKKWveeypsekspfklSGLVRKKSSLDHSHAANGLRSIFLNTPSKSDQPKVQKheeekqsrkishagvpasainknpkdrsrndILADCQKLVDEILKEYPEGYNMRGFRQLFIERYGYHLDIQKLGYQKLGTLLQIMPGVMIESRYMLPSNKVMCSSGLETSDPGFeeadahhplsnsdRELLETSkksddsdsqweelgpvsnlsfdrkavqsglkgepvketetetypdyepsvSDDEFSDSGGDASTatqpegqgkpevdnedsSLLQILDSWYsskeevdnnknksenvdgmvDCSTDGVIPSAsseeattsatssgnfalkqrpkkrysfvsdpldnekdklidgilgslkksgeprmeg
MKpfspksllslscsssssspssplRIFVAHFSTSSNTSPRRHEEESKNVRVSVWWDFENCNLPAGVNAFKVAHTITAAIRANGIKGPVTITAFGDVVQMSRANQEVLSSTGINIAHVPHGGKNSADRSLLVDLMYWVSQNPPPAHLFLISGDRDFASVLHRLRMNNYNILLASRESASNVLCSAASVMWNWDSLLRKENLAGKHFNQPPDGPYGSWYGHYKGPLLDPFSVAEQPAISRSVEPPEPASDKLRPVPKSVVRQIRYILKSYPEGIFITELRAELSKSPVTIDKDLYGYKKFSRFLLSMPNILRLQPEPDGQFLVYGSTPKAPEPFEIDLGTSNGHDCENGTSNGHVCRNGDRELSESLKLSVDQGLKNGAANGKPSSSPEAVVDQPSRKVQQHPLSSEKENVINAEVQEPLKKVQQPPPMDKNVSSPVAVQEDEPHVLKQDPVNEVVFFKKIWIRWFGGKNGDSDIKSQHIPEKCSDSGDISQKISKKRPEKPLAYGDGKKKKVEEKNIRSPTQDDDLAESVQGKKTAKSAHACGEKSTMSAGVLSQIVNWCKFrrsrpdsdslsdlssEKLNQTNSNAQKHAVFLKDSFWSDMESFMKSPRGSVIVSQSRTRKQMAESLKEEGPLVLRDLSECDLLDLVDLMILEKKWVEEYPSEKSPFKLSGLVRKKSSLDHSHAANGLRSIFLNTPSKSDQPKVQKHEEEKQSRKISHAGVPASAINKNPKDRSRNDILADCQKLVDEILKEYPEGYNMRGFRQLFIERYGYHLDIQKLGYQKLGTLLQIMPGVMIESRYMLPSNKVMCSSGLETSDPGFEEADAHHPLSNSDRELLETSKKSDDSDSQWEELGPVSNLSFDRKAVQSGLKGEPVKetetetYPDYEPSVSDDEFSDSGGDASTATQPEGQGKPEVDNEDSSLLQILDSWYSSKEEVDNNKNKSENVDGMVDCSTDGVIPsasseeattsatssGNFALKQRPKKRYSFVSDPLDNEKDKLIDGILGSLKKSGEPRMEG
*************************************************VRVSVWWDFENCNLPAGVNAFKVAHTITAAIRANGIKGPVTITAFGDVVQMSRANQEVLSSTGINIAHVPHGGKNSADRSLLVDLMYWVSQNPPPAHLFLISGDRDFASVLHRLRMNNYNILLASRESASNVLCSAASVMWNWDSLLRKENLAGKHFNQPPDGPYGSWYGHYKGPLLDPF****************************VVRQIRYILKSYPEGIFITELRAELSKSPVTIDKDLYGYKKFSRFLLSMPNILRLQPEPDGQFLVYG****************************************************************************************************************************DPVNEVVFFKKIWIRWFGG**********************************************************************************AGVLSQIVNWCKF*****************************VFLKDSFW**********************************LVLRDLSECDLLDLVDLMILEKKWVEEY*****************************************************************************ILADCQKLVDEILKEYPEGYNMRGFRQLFIERYGYHLDIQKLGYQKLGTLLQIMPGVMIESRYMLPSN**********************************************************************************************************************************************************************************************************************
****************************************************SVWWDFENCNLPAGVNAFKVAHTITAAIRANGIKGPVTITAFGDVVQMSRANQEVLSSTGINIAHVPHGGKNSADRSLLVDLMYWVSQNPPPAHLFLISGDRDFASVLHRLRMNNYNILLASRESASNVLCSAASVMWNWDSLLRK************************************************************VRQIRYILKSYP***********************YGYKKFSRFL***********************************************************************************************************************************************************************************************************************************************************QIVNWCKFRR********************************SFWSDM************************************LSECDLLDLVDLMILEKKWVEEYPSEKSPFKLSG********************************************************************ADCQKLVDEILKEYPEGYNMRGFRQLFIERYGYHLDIQKLGYQKLGTLLQIMPGVMIESRY*****************************************************************************************************************************ILD***********************************************************************KLID****************
***********************PLRIFVAHFS****************VRVSVWWDFENCNLPAGVNAFKVAHTITAAIRANGIKGPVTITAFGDVVQMSRANQEVLSSTGINIAHVPHGGKNSADRSLLVDLMYWVSQNPPPAHLFLISGDRDFASVLHRLRMNNYNILLASRESASNVLCSAASVMWNWDSLLRKENLAGKHFNQPPDGPYGSWYGHYKGPLLDPFSVAEQP*****************PVPKSVVRQIRYILKSYPEGIFITELRAELSKSPVTIDKDLYGYKKFSRFLLSMPNILRLQPEPDGQFLVYGSTPKAPEPFEIDLGTSNGHDCENGTSNGHVCRNGDRELSESLKLSVDQGLKN****************************SEKENVINAEVQEPLKKVQQPPPMDKNVSSPVAVQEDEPHVLKQDPVNEVVFFKKIWIRWFGGKNGDSDIKSQHIPEKCSDSGDISQKISKKRPEKPLAYGDGKKKKVEEKNIRS**************************STMSAGVLSQIVNWCKFRR**************KLNQTNSNAQKHAVFLKDSFWSDMESFMKSP********************EEGPLVLRDLSECDLLDLVDLMILEKKWVEEYPSEKSPFKLSGLVRKKSSLDHSHAANGLRSIFLNTPS**********************GVPASAINKNPKDRSRNDILADCQKLVDEILKEYPEGYNMRGFRQLFIERYGYHLDIQKLGYQKLGTLLQIMPGVMIESRYMLPSNKVMCSSGLETSDPGFEEADAHHPLSN*********************LGPVSNLSFDRK********************DYEP*******************************DSSLLQILDSWYSS**********SENVDGMVDCSTDGVI*********************QRPKKRYSFVSDPLDNEKDKLIDGILGSLK*********
************************LRIFVAHFSTSSNTSPRRHEEESKNVRVSVWWDFENCNLPAGVNAFKVAHTITAAIRANGIKGPVTITAFGDVVQMSRANQEVLSSTGINIAHVPHGGKNSADRSLLVDLMYWVSQNPPPAHLFLISGDRDFASVLHRLRMNNYNILLASRESASNVLCSAASVMWNWDSLLRKENLAGKHFNQPPDGPYGSWYGHYKGPLLDPFSVA*****************KLRPVPKSVVRQIRYILKSYPEGIFITELRAELSKSPVTIDKDLYGYKKFSRFLLSMPNILRLQPEPDGQFLVYGST*********************************************************************************************************************HVLKQDPVNEVVFFKKIWIRWFG***********************************************************************************AGVLSQIVNWCKFRR**************************AVFLKDSFWSDMESFMKSPRGSVIVSQSRTRKQMAESLKEEGPLVLRDLSECDLLDLVDLMILEKKWVEEYPSEKSPFKLSGLVRKKSS******************************************************RSRNDILADCQKLVDEILKEYPEGYNMRGFRQLFIERYGYHLDIQKLGYQKLGTLLQIMPGVMIESRYMLPSNK*******************************************W**********************************************************************SSLLQILDSWYS***************************************************KKRYSFVSDPLDNEKDKLIDGILGS***********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKPFSPKSLLSLSCSSSSSSPSSPLRIFVAHFSTSSNTSPRRHEEESKNVRVSVWWDFENCNLPAGVNAFKVAHTITAAIRANGIKGPVTITAFGDVVQMSRANQEVLSSTGINIAHVPHGGKNSADRSLLVDLMYWVSQNPPPAHLFLISGDRDFASVLHRLRMNNYNILLASRESASNVLCSAASVMWNWDSLLRKENLAGKHFNQPPDGPYGSWYGHYKGPLLDPFSVAEQPAISRSVEPPEPASDKLRPVPKSVVRQIRYILKSYPEGIFITELRAELSKSPVTIDKDLYGYKKFSRFLLSMPNILRLQPEPDGQFLVYGSTPKAPEPFEIDLGTSNGHDCENGTSNGHVCRNGDRELSESLKLSVDQGLKNGAANGKPSSSPEAVVDQPSRKVQQHPLSSEKENVINAEVQEPLKKVQQPPPMDKNVSSPVAVQEDEPHVLKQDPVNEVVFFKKIWIRWFGGKNGDSDIKSQHIPEKCSDSGDISQKISKKRPEKPLAYGDGKKKKVEEKNIRSPTQDDDLAESVQGKKTAKSAHACGEKSTMSAGVLSQIVNWCKFRRSRPDSDSLSDLSSEKLNQTNSNAQKHAVFLKDSFWSDMESFMKSPRGSVIVSQSRTRKQMAESLKEEGPLVLRDLSECDLLDLVDLMILEKKWVEEYPSEKSPFKLSGLVRKKSSLDHSHAANGLRSIFLNTPSKSDQPKVQKHEEEKQSRKISHAGVPASAINKNPKDRSRNDILADCQKLVDEILKEYPEGYNMRGFRQLFIERYGYHLDIQKLGYQKLGTLLQIMPGVMIESRYMLPSNKVMCSSGLETSDPGFEEADAHHPLSNSDRELLETSKKSDDSDSQWEELGPVSNLSFDRKAVQSGLKGEPVKETETETYPDYEPSVSDDEFSDSGGDASTATQPEGQGKPEVDNEDSSLLQILDSWYSSKEEVDNNKNKSENVDGMVDCSTDGVIPSASSEEATTSATSSGNFALKQRPKKRYSFVSDPLDNEKDKLIDGILGSLKKSGEPRMEG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1020 2.2.26 [Sep-21-2011]
B2GUN4 1681 Meiosis arrest female pro yes no 0.137 0.083 0.302 3e-10
Q8BJ34 1730 Meiosis arrest female pro yes no 0.137 0.080 0.295 3e-10
Q8VIG2 1735 Meiosis arrest female pro yes no 0.137 0.080 0.295 3e-10
Q9Y4F3 1742 Meiosis arrest female pro yes no 0.137 0.080 0.295 5e-10
E1BP74 1742 Meiosis arrest female pro yes no 0.137 0.080 0.295 7e-10
E1BZ85 1741 Meiosis arrest female pro yes no 0.137 0.080 0.302 2e-09
>sp|B2GUN4|MARF1_XENTR Meiosis arrest female protein 1 homolog OS=Xenopus tropicalis GN=marf1 PE=2 SV=1 Back     alignment and function desciption
 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 9/149 (6%)

Query: 52  VSVWWDFENCNLPAGVNAFKVAHTITAAIRANGIKGPVTITAFGDVVQMSRANQEV---L 108
           + V+WD ENC++P+G +A     T+   IR    KG      F  V  +S+ N+EV   L
Sbjct: 340 IGVFWDIENCSVPSGRSAV----TVVKRIRERLFKGHRE-AEFICVCDISKENKEVIEEL 394

Query: 109 SSTGINIAHVPHGGKNSADRSLLVDLMYWVSQNPPPAHLFLISGDRDFASVLHRLRM-NN 167
           ++  + +AH+    KN+AD  L   L  +   +  PA + L+S D +FA  L  LR  ++
Sbjct: 395 NNCQVTVAHINATAKNAADDKLRQSLRRFADTHTSPATVVLVSTDVNFALELSDLRHRHS 454

Query: 168 YNILLASRESASNVLCSAASVMWNWDSLL 196
           ++I+L  +  AS  L   A  + +++  +
Sbjct: 455 FHIILIHKNQASEALLHHAHELIHFEEFI 483

Xenopus tropicalis (taxid: 8364)
>sp|Q8BJ34|MARF1_MOUSE Meiosis arrest female protein 1 OS=Mus musculus GN=Marf1 PE=1 SV=3 Back     alignment and function description
>sp|Q8VIG2|MARF1_RAT Meiosis arrest female protein 1 OS=Rattus norvegicus GN=Marf1 PE=1 SV=2 Back     alignment and function description
>sp|Q9Y4F3|MARF1_HUMAN Meiosis arrest female protein 1 OS=Homo sapiens GN=KIAA0430 PE=1 SV=6 Back     alignment and function description
>sp|E1BP74|MARF1_BOVIN Meiosis arrest female protein 1 OS=Bos taurus GN=MARF1 PE=3 SV=2 Back     alignment and function description
>sp|E1BZ85|MARF1_CHICK Meiosis arrest female protein 1 homolog OS=Gallus gallus GN=MARF1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1020
225431392990 PREDICTED: uncharacterized protein LOC10 0.962 0.991 0.539 0.0
296088635871 unnamed protein product [Vitis vinifera] 0.848 0.993 0.506 0.0
224126929998 predicted protein [Populus trichocarpa] 0.946 0.966 0.487 0.0
224056045855 predicted protein [Populus trichocarpa] 0.807 0.963 0.481 0.0
4494659301049 PREDICTED: uncharacterized protein LOC10 0.933 0.907 0.424 0.0
449503066957 PREDICTED: uncharacterized protein LOC10 0.872 0.929 0.434 0.0
15242519924 Putative endonuclease or glycosyl hydrol 0.822 0.908 0.413 1e-180
297807007918 hypothetical protein ARALYDRAFT_487806 [ 0.837 0.930 0.406 1e-179
297794065860 hypothetical protein ARALYDRAFT_919795 [ 0.707 0.839 0.428 1e-162
15238228841 Putative endonuclease or glycosyl hydrol 0.775 0.940 0.377 1e-153
>gi|225431392|ref|XP_002272192.1| PREDICTED: uncharacterized protein LOC100259153 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  987 bits (2552), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/1024 (53%), Positives = 708/1024 (69%), Gaps = 42/1024 (4%)

Query: 1    MKPFSPKSLLSLSCSSSSSSPSSPLRIFVAHFSTSSNTSP---RRHEEESKNVRVSVWWD 57
            MK  S + +  L  S  SS P  P   F++HF+TS+       RRHE+ES+ V+VSVWWD
Sbjct: 1    MKLLSSRPIF-LFASYFSSPP--PYLFFISHFTTSTTPLSSSYRRHEDESRTVKVSVWWD 57

Query: 58   FENCNLPAGVNAFKVAHTITAAIRANGIKGPVTITAFGDVVQMSRANQEVLSSTGINIAH 117
            FENCN+PAGVN FK+AH+ITAA+RANGIKGP+ ITAFGDV Q++R+NQE LSSTGIN+AH
Sbjct: 58   FENCNIPAGVNVFKIAHSITAAVRANGIKGPLQITAFGDVSQLARSNQEALSSTGINLAH 117

Query: 118  VPHGGKNSADRSLLVDLMYWVSQNPPPAHLFLISGDRDFASVLHRLRMNNYNILLASRES 177
            +P+GGKNSADRSLL+DLMYWVSQNPPPAHLFLISGDRDFAS+LHRLRM+NYN+LLAS  +
Sbjct: 118  IPNGGKNSADRSLLLDLMYWVSQNPPPAHLFLISGDRDFASILHRLRMSNYNVLLASPGT 177

Query: 178  ASNVLCSAASVMWNWDSLLRKENLAGKHFNQPPDGPYGSWYGHYKGPLLDPFSVAEQPAI 237
            AS VLCSAAS+MWNW++L+R ENL GKHFNQPPDGPYGSWYGH+K PL DPFSV EQP+ 
Sbjct: 178  ASGVLCSAASIMWNWNALVRGENLTGKHFNQPPDGPYGSWYGHFKVPLEDPFSVVEQPSS 237

Query: 238  SRSVEPPEPASD-KLRPVPKSVVRQIRYILKSYPEGIFITELRAELSKSPVTIDKDLYGY 296
             ++ E  EP  D KLRP+P+ V+RQIR+IL SYP+G+ ITELR+EL KS V IDKD YGY
Sbjct: 238  PQAEELSEPGLDSKLRPIPRIVMRQIRHILNSYPKGVSITELRSELGKSNVKIDKDFYGY 297

Query: 297  KKFSRFLLSMPNILRLQPEPDGQFLVYGSTPKAPEPFEIDLGTSNGHDCENGTSNGHVCR 356
            +KFS FLLSMP+IL+LQ   DGQ+ V     KAPEP E               S G V  
Sbjct: 298  RKFSHFLLSMPHILKLQSRGDGQYCVQRIASKAPEPVE----------SIAPISVGPVSN 347

Query: 357  NGDRELSESLKLSVDQGLKNGAANGKPS--SSPEAVVDQPSRKVQQHPLSSEKENVINAE 414
            + +RELS + KL   +   +GA NGK S   SPE  V +P  KV++ P+  E+   +  +
Sbjct: 348  SENRELSLNPKLHNTELSGSGAVNGKSSLPLSPELKVKEPPTKVEEPPIKEEEPPPLGQK 407

Query: 415  VQEPLKKVQQPPPMDKNVSSPVAVQEDEPHVLKQDPVNEVVFFKKIWIRWFGGKNGDSDI 474
            V E               ++  A +E    V   +  +EV FFKKIW +WF  K+G  + 
Sbjct: 408  VAE--------------TTNAHAAEEHLSPVEGPESSSEVGFFKKIWRKWFSSKDGGFEK 453

Query: 475  KSQHIPEKCSDSGDISQKISKKRPEKPLAYGDGKKKKVEEKNIRSPTQDDDLAESVQGKK 534
            +S  IPEKC    D S+KI  K  EK +     +   +E  +I S   D    +    KK
Sbjct: 454  ESNRIPEKCGTCDDSSEKI--KSEEKCMDSKSQQADPIEMVSISSSNDDGSFLD----KK 507

Query: 535  TAKSAHACGEKSTMSAGVLSQIVNWCKFRRSRPDSDSLSDLSSEKLNQTNSNAQKHAVFL 594
            + +S+    +KS  S+   +++ NWCKF R+ P SD LSD S E+LNQ NS+++KH  F 
Sbjct: 508  STRSSETYDDKSIASSNFFNKVANWCKFWRASPQSDVLSDQSWERLNQINSHSEKHDCFS 567

Query: 595  KDSFWSDMESFMKSPRGSVIVSQSRTRKQMAESLKEEGPLVLRDLSECDLLDLVDLMILE 654
            +DS WSD++SFM +P+GSV+VSQSRTR+QMA++L++EGPLVL  L+E DLL LVDL+I +
Sbjct: 568  EDSLWSDIKSFMATPKGSVLVSQSRTREQMAQNLRKEGPLVLGSLTETDLLHLVDLLISD 627

Query: 655  KKWVEEYPSEKSPFKLSGLVRKKSSLDHSHAANGLRSIFLNTPSKSDQPKVQKHEEEKQS 714
            KKWVEE P++ SPFK+   V KKS+    H +NGL SIFL T S+S+  +  +H  EK+ 
Sbjct: 628  KKWVEENPTQTSPFKVIWPVGKKSTSSQPHVSNGLSSIFLGTQSQSNLQRQLEH-GEKRD 686

Query: 715  RKISHAGVPASAINKNPKDRSRNDILADCQKLVDEILKEYPEGYNMRGFRQLFIERYGYH 774
            + + H G     I+K   DRSR++ILA CQKLVDEILKEYPEG+NM  FR+LF+ERYGY 
Sbjct: 687  QNLPHTGASRPVIDKKMLDRSRSEILAHCQKLVDEILKEYPEGFNMGAFRKLFLERYGYS 746

Query: 775  LDIQKLGYQKLGTLLQIMPGVMIESRYMLPSNKVMCSSGLETSDPGFEEADAHHPLSNSD 834
            LD+QKLGYQ+L +LLQIMPGV IES Y++PS      S LE+SD   +E +    + NSD
Sbjct: 747  LDVQKLGYQRLASLLQIMPGVKIESTYIVPSWTASKGSLLESSDTNGQEDNVSGKVGNSD 806

Query: 835  RELLETSKKSDDSDSQWEELGPVSNLSFDRKAVQSGLKGEPVKETETETYPDYEPSVSDD 894
             EL + S+K DD DS WEELGPV++ + +R  ++S L+ +  +ET  + + DYEPS SDD
Sbjct: 807  SELSDASRKEDDLDSPWEELGPVADTNSNRNEMESELRRKKKEETVRQVHLDYEPSPSDD 866

Query: 895  EFSDSGGDASTATQPEGQGKPEVDNEDSSLLQILDSWYSSKEEVDNNKNKSENVDGMVDC 954
            +FSDS G+ S +T  + Q +P++  EDSSLL+ILDSWYSSKE+ +  ++  EN DGM+DC
Sbjct: 867  DFSDSEGETSLSTGTDRQERPKISKEDSSLLRILDSWYSSKED-NKRRDGVENADGMIDC 925

Query: 955  STDGVIPSASSEEATTSATSSGNFALKQRPKKRYSFVSDPLDNEKDKLIDGILGSLKKSG 1014
            S + +  S SS   +   TS  N   KQRP + YSFVSD  D +KDKLIDGILGSLKKSG
Sbjct: 926  SRNDLKSSGSSGFFSEDDTSPINCRKKQRPVRSYSFVSDHGD-DKDKLIDGILGSLKKSG 984

Query: 1015 EPRM 1018
            E RM
Sbjct: 985  ESRM 988

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296088635|emb|CBI37626.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224126929|ref|XP_002329508.1| predicted protein [Populus trichocarpa] gi|222870188|gb|EEF07319.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056045|ref|XP_002298719.1| predicted protein [Populus trichocarpa] gi|222845977|gb|EEE83524.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449465930|ref|XP_004150680.1| PREDICTED: uncharacterized protein LOC101207201, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|449503066|ref|XP_004161821.1| PREDICTED: uncharacterized protein LOC101230056, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|15242519|ref|NP_196546.1| Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana] gi|9758962|dbj|BAB09405.1| unnamed protein product [Arabidopsis thaliana] gi|332004071|gb|AED91454.1| Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297807007|ref|XP_002871387.1| hypothetical protein ARALYDRAFT_487806 [Arabidopsis lyrata subsp. lyrata] gi|297317224|gb|EFH47646.1| hypothetical protein ARALYDRAFT_487806 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297794065|ref|XP_002864917.1| hypothetical protein ARALYDRAFT_919795 [Arabidopsis lyrata subsp. lyrata] gi|297310752|gb|EFH41176.1| hypothetical protein ARALYDRAFT_919795 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15238228|ref|NP_201276.1| Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana] gi|10177202|dbj|BAB10304.1| unnamed protein product [Arabidopsis thaliana] gi|332010558|gb|AED97941.1| Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1020
TAIR|locus:2176075841 AT5G64710 "AT5G64710" [Arabido 0.292 0.354 0.605 1.5e-158
TAIR|locus:2178163924 AT5G09840 [Arabidopsis thalian 0.598 0.660 0.441 2.7e-143
TAIR|locus:2098058673 AT3G62200 "AT3G62200" [Arabido 0.159 0.242 0.445 2.7e-36
TAIR|locus:2098073279 EDA32 "embryo sac development 0.150 0.551 0.442 6.3e-33
TAIR|locus:2159491346 AT5G61180 "AT5G61180" [Arabido 0.073 0.216 0.506 9.8e-28
TAIR|locus:2100957257 AT3G60940 "AT3G60940" [Arabido 0.143 0.568 0.387 5.3e-25
TAIR|locus:2053567489 AT2G15560 [Arabidopsis thalian 0.153 0.321 0.349 1.6e-18
TAIR|locus:2097963157 AT3G62050 "AT3G62050" [Arabido 0.110 0.719 0.327 1.1e-13
TAIR|locus:2081700472 AT3G62850 [Arabidopsis thalian 0.146 0.315 0.331 6.9e-12
TAIR|locus:2165902192 AT5G35640 "AT5G35640" [Arabido 0.115 0.614 0.327 5.3e-11
TAIR|locus:2176075 AT5G64710 "AT5G64710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 965 (344.8 bits), Expect = 1.5e-158, Sum P(5) = 1.5e-158
 Identities = 189/312 (60%), Positives = 234/312 (75%)

Query:    29 VAHFSTSSN-----TSPRR--HEEESKNVRVSVWWDFENCNLPAGVNAFKVAHTITAAIR 81
             V +FS+SS+     TS +R  +EE+S++VRV VWWDFENC+LP+G N FK+A TIT+A+R
Sbjct:    32 VGNFSSSSSISAHYTSLKRSQYEEDSRSVRVPVWWDFENCHLPSGANVFKLAQTITSAVR 91

Query:    82 ANGIKGPVTITAFGDVVQMSRANQEVLSSTGINIAHVPHGGKNSADRSLLVDLMYWVSQN 141
               GIKGP+TITA+GD++Q+SR NQE L +TGIN+ HVP GGKNS DRSL+ ++M WVSQN
Sbjct:    92 ICGIKGPITITAYGDMIQLSRTNQEALFATGINLTHVPQGGKNSTDRSLITEIMCWVSQN 151

Query:   142 PPPAHLFLISGDRDFASVLHRLRMNNYNILLASRESAS-NVLCSAASVMWNWDSLLRKEN 200
             PPPAHLFLIS D DFA+VLHRLRM NYNILLA  E  +  VLCSAAS+MW+WD+L+R +N
Sbjct:   152 PPPAHLFLISSDSDFANVLHRLRMRNYNILLACYEETTLGVLCSAASIMWDWDALVRGQN 211

Query:   201 LAGKHFNQPPDGPYGSWYGHYKGPLLDPFSVA-EQPAIS----RSVEPPEPASDKLR-PV 254
                KHFNQPPDGPY SWYGHY  PLLDPF+ +     IS    ++VE  E  S K R P+
Sbjct:   212 PTAKHFNQPPDGPYHSWYGHYTTPLLDPFATSTNNKQISSTSVKTVELLELGSSKSRRPI 271

Query:   255 PKSVVRQIRYILKSYPEGIFITELRAELSKSPVTIDKDLYGYKKFSRFLLSMPNILRLQP 314
             P  VV+QI  IL+ YP+G  ITELR +L K  V +D+D YGYK FSRFLLSM NIL++ P
Sbjct:   272 PNKVVKQIGLILRWYPKGAAITELREQLRKRKVLLDRDFYGYKSFSRFLLSMRNILQVVP 331

Query:   315 EPDGQFLVYGST 326
               DG F ++  T
Sbjct:   332 LGDGMFSIHAVT 343
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
TAIR|locus:2178163 AT5G09840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098058 AT3G62200 "AT3G62200" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098073 EDA32 "embryo sac development arrest 32" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2159491 AT5G61180 "AT5G61180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100957 AT3G60940 "AT3G60940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053567 AT2G15560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097963 AT3G62050 "AT3G62050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081700 AT3G62850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165902 AT5G35640 "AT5G35640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00008704001
SubName- Full=Chromosome chr4 scaffold_205, whole genome shotgun sequence; (923 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1020
cd10910145 cd10910, limkain_b1_N_like, N-terminal LabA-like d 3e-55
pfam01936141 pfam01936, NYN, NYN domain 1e-29
cd0882470 cd08824, LOTUS, LOTUS is an uncharacterized small 9e-12
cd0882470 cd08824, LOTUS, LOTUS is an uncharacterized small 1e-06
pfam1287274 pfam12872, OST-HTH, OST-HTH/LOTUS domain 3e-06
cd06167151 cd06167, LabA_like, LabA_like proteins 8e-06
pfam1441869 pfam14418, OHA, OST-HTH Associated domain 2e-05
>gnl|CDD|199896 cd10910, limkain_b1_N_like, N-terminal LabA-like domain of limkain b1 and similar proteins Back     alignment and domain information 
 Score =  187 bits (478), Expect = 3e-55
 Identities = 74/144 (51%), Positives = 98/144 (68%), Gaps = 1/144 (0%)

Query: 52  VSVWWDFENCNLPAGVNAFKVAHTITAAIRANGIKGPVTITAFGDVVQMSRANQEVLSST 111
             V+WD ENC +P GV+A +V   I  A+R  G  GPVTITA+GD+  + +   E LSST
Sbjct: 2   TGVFWDIENCPVPDGVDARRVGPNIKRALRKLGYSGPVTITAYGDLTDVPKDVLEELSST 61

Query: 112 GINIAHVPHGGKNSADRSLLVDLMYWVSQNPPPAHLFLISGDRDFASVLHRLRMNNYNIL 171
           GI++AHVP G KN+AD+ +LVD++ W   NPPPA++ LISGD+DFA  L  LR   YN+L
Sbjct: 62  GISLAHVPSGDKNAADKKILVDILLWALDNPPPANIMLISGDKDFADTLSDLRERGYNVL 121

Query: 172 LA-SRESASNVLCSAASVMWNWDS 194
           LA   + AS+ L  AAS +W W+S
Sbjct: 122 LAQPPDQASSALSEAASEVWLWES 145

This eukaryotic subfamily of LabA-like domains contains the N-terminal domain of human limkain b1, a human autoantigen, localized to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures. Limkain b1 contains multiple copies of LOTUS domains and a conserved RNA recognition motif, its - and similar - domain architectures are shared by several members of this family, and a function of these architectures in RNA binding or RNA metabolism has been suggested. The function of the N-terminal domain is unknown. LabA_like domains exhibit some similarity to the NYN domain, a distant relative of the PIN-domain nucleases. Length = 145
>gnl|CDD|216797 pfam01936, NYN, NYN domain Back     alignment and domain information
>gnl|CDD|193585 cd08824, LOTUS, LOTUS is an uncharacterized small globular domain found in Limkain b1, Oskar and Tudor-containing proteins 5 and 7 Back     alignment and domain information
>gnl|CDD|193585 cd08824, LOTUS, LOTUS is an uncharacterized small globular domain found in Limkain b1, Oskar and Tudor-containing proteins 5 and 7 Back     alignment and domain information
>gnl|CDD|221822 pfam12872, OST-HTH, OST-HTH/LOTUS domain Back     alignment and domain information
>gnl|CDD|199895 cd06167, LabA_like, LabA_like proteins Back     alignment and domain information
>gnl|CDD|206585 pfam14418, OHA, OST-HTH Associated domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1020
TIGR00288160 conserved hypothetical protein TIGR00288. This fam 99.91
PF01936146 NYN: NYN domain; InterPro: IPR021139 This highly c 99.87
cd06167149 LabA_like LabA_like proteins. A well conserved gro 99.81
PF1441875 OHA: OST-HTH Associated domain 98.94
PF1287274 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 98.86
COG1432181 Uncharacterized conserved protein [Function unknow 98.86
PF1287274 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 97.65
COG4634113 Uncharacterized protein conserved in bacteria [Fun 91.71
PRK00124151 hypothetical protein; Validated 83.34
>TIGR00288 conserved hypothetical protein TIGR00288 Back     alignment and domain information 
Probab=99.91  E-value=1e-23  Score=211.81  Aligned_cols=134  Identities=16%  Similarity=0.162  Sum_probs=114.3

Q ss_pred             CCCeEEEEEecCCCCCCCCCChhhHHHHHHHHHHHhCCCCceEE-EEeecccccchhhHHHhhhcCCceeeccCCCccch
Q 001724           48 KNVRVSVWWDFENCNLPAGVNAFKVAHTITAAIRANGIKGPVTI-TAFGDVVQMSRANQEVLSSTGINIAHVPHGGKNSA  126 (1020)
Q Consensus        48 ~~~rVAVFWDiENcpiP~g~d~~~Va~nI~~aLrelG~~GpVtI-RAYGDws~~~k~~qe~L~ssGI~LihvP~ggKNAA  126 (1020)
                      ...+||||||++|++. ..+     ..+++.+++.+..+|.|++ |+||||.. ...+++.|...||+++.+    |+++
T Consensus        21 ~~~riAvfID~~Nv~~-~~~-----~~d~~~i~~~ls~~G~i~~~R~Y~~a~a-~~~l~~~l~~~Gf~pv~~----kG~~   89 (160)
T TIGR00288        21 GEKKIGLLVDGPNMLR-KEF-----NIDLDEIREILSEYGDIKIGKVLLNQYA-SDKLIEAVVNQGFEPIIV----AGDV   89 (160)
T ss_pred             CCCcEEEEEeCCccCh-hhh-----ccCHHHHHHHHHhcCCeEEEEEEechhc-cHHHHHHHHHCCceEEEe----cCcc
Confidence            3578999999999973 211     1235666777778899999 99999744 346889999999998753    5689


Q ss_pred             hhHHHHHHHHHHHhCCCCcEEEEEeCCcchHHHHHHHHhCCCEEEEec-CCchhHHHHhhcceEEecc
Q 001724          127 DRSLLVDLMYWVSQNPPPAHLFLISGDRDFASVLHRLRMNNYNILLAS-RESASNVLCSAASVMWNWD  193 (1020)
Q Consensus       127 Di~LiIDaMd~a~~nP~pdtFVLISGDsDFtpLL~RLRerGynVILag-p~kTpeaL~sAcd~Fw~we  193 (1020)
                      |+.|+||||+++|. +.+|+|||||||+||++|+.+||++|+.|++++ +.+||..|+++||+|+++.
T Consensus        90 Dv~laIDame~~~~-~~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v~g~~~~ts~~L~~acd~FI~L~  156 (160)
T TIGR00288        90 DVRMAVEAMELIYN-PNIDAVALVTRDADFLPVINKAKENGKETIVIGAEPGFSTALQNSADIAIILG  156 (160)
T ss_pred             cHHHHHHHHHHhcc-CCCCEEEEEeccHhHHHHHHHHHHCCCEEEEEeCCCCChHHHHHhcCeEEeCC
Confidence            99999999999996 679999999999999999999999999999988 6689999999999999865

This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function Back     alignment and domain information
>cd06167 LabA_like LabA_like proteins Back     alignment and domain information
>PF14418 OHA: OST-HTH Associated domain Back     alignment and domain information
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A Back     alignment and domain information
>COG1432 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A Back     alignment and domain information
>COG4634 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK00124 hypothetical protein; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1020
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
3rco_A89 Tudor domain-containing protein 7; structural geno 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 84.9 bits (209), Expect = 9e-17
 Identities = 90/661 (13%), Positives = 186/661 (28%), Gaps = 181/661 (27%)

Query: 220 HYKGPLLDPFSVAEQPAISRSVEPPEPASDKLR-PVPKSVVRQIRYILKSYPEGI---FI 275
            ++   +D F   +   + +S+   E     +      S   ++ + L S  E +   F+
Sbjct: 24  VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83

Query: 276 TELRAELSKSPVTIDKDLYGYKKFSRFLLSMPNILRLQPEPDGQFLVYGSTPKAPEPFEI 335
            E+          +  + Y       FL+S      ++ E            + P     
Sbjct: 84  EEV----------LRIN-YK------FLMS-----PIKTEQ-----------RQPS---- 106

Query: 336 DLGTSNGHDCENGTSNG-------HVCR--------NGDRELSESLKLSVDQGLKNGAAN 380
            + T    +  +   N        +V R            EL  +  + +  G+  G+  
Sbjct: 107 -MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI-DGVL-GS-- 161

Query: 381 GKPSSSPEAVVDQPSRKVQQHP------LSSEKENVINAEVQEPLKKVQQPPPMDKNVSS 434
           GK   + +  +     KVQ         L+ +  N     V E L+K+     +D N +S
Sbjct: 162 GKTWVALDVCLSY---KVQCKMDFKIFWLNLKNCNSPE-TVLEMLQKLLYQ--IDPNWTS 215

Query: 435 PVAVQEDEPHVLKQDPVNEVVFFKKIWIRWFGGKNG----DSDIKSQHIPE----KC--- 483
                 +         ++ +    +  ++    +N       ++++          C   
Sbjct: 216 RSDHSSNIKL-----RIHSIQAELRRLLKSKPYENCLLVLL-NVQNAKAWNAFNLSCKIL 269

Query: 484 ---SDSGDISQKISKKRPEKPLAYGDGKKKKVEEKNIRSPTQDDDLAESVQGKKTAKSAH 540
                        +       L                +P +   L       +      
Sbjct: 270 LTTRFKQVTDFLSAATTTHISL---------DHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 541 ACGEKSTMSAGVLSQIVNWCKFRRSRPD------SDSLSDLSSEKLNQTNSNAQKH---- 590
              E  T +   LS I    +   +  D       D L+ +    LN       +     
Sbjct: 321 ---EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

Query: 591 -AVFLKDS---------FWSDMESFMKSPRGSVIVSQSRTRKQMAESLKEEGPLVLRDLS 640
            +VF   +          W D+          V+V++   +  + E   +E  + +  + 
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKS--DVM--VVVNKLH-KYSLVEKQPKESTISIPSI- 431

Query: 641 ECDLLDLV----DLMILEKKWVEEY-------PSEKSPFKLSG-----LVRKKSSLDHSH 684
               L+L     +   L +  V+ Y         +  P  L       +     +++H  
Sbjct: 432 ---YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488

Query: 685 AANGLRSIFLNTPSKSDQPKVQKHEEEKQSRKISHAGVPASAINKNPKDRSRNDILADCQ 744
                R +FL      D   ++        +KI H     +A        S  + L   +
Sbjct: 489 RMTLFRMVFL------DFRFLE--------QKIRHDSTAWNASG------SILNTLQQLK 528

Query: 745 KLVDEILKEYPEGYNMRGFRQL--FIERYGYHLDIQKLGYQKLGTLLQIMPGVMIESRYM 802
                I    P+ Y       +  F+ +   +L        K   LL+I   +M E   +
Sbjct: 529 FYKPYICDNDPK-YERL-VNAILDFLPKIEENLIC-----SKYTDLLRI--ALMAEDEAI 579

Query: 803 L 803
            
Sbjct: 580 F 580
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3rco_A Tudor domain-containing protein 7; structural genomics, structural genomics consortium, SGC, HL DNA binding protein; 1.80A {Homo sapiens} Length = 89 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00