Citrus Sinensis ID: 001728

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020
MKPPANGFLPSSAEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKENDFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQFSKANPQNQVNQLPQSPIAWTQQQQLQHLLQNPLNQQQQQHPQLHQQRQQQQQLLHPQQSQQQQQQQQNHHHHNQQPPPPPQLQPSPTPPHSQSQSQSPVPQRPQQQPQQQQQQPQQQIFLPTHVNNGVLVPNANQNVQQPTVYSQLQQPQLLTSNTQAPQGILSNNKNSYQLTSLPQDSQFQQQMEQSTGPLQRQQQQSQLQQSSLQFLQQSLAQRAQQQPQVQQLAQQSMSDQQLQSQLQQKLQQQQQQQLLSPAGSLLQPQLLQQQLAHQQNQQLSQLPPSQNHQQQLSNNLSASVLVQPQQLPMNQPQNQNRPLTGTRAHSNHTDGDAPSCSTSPSSNNCQISPSNFLNRNQQGPAMLMGDSVVEPSSNLVQELHSKSDARIKHELPISKGPEHLKYNGSMTDQVEASSSGTSYCLDPGNIQQNFSLPTYCLDGDTQSHPRNSLPFVANIDGMAPDTLLSRGYDSQKDLHNLLSNYGGTPRDIETELSTAAISSQSFAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQRMRTFTKVCYAIYSL
cccccccccccccccccccccHHHHHHcccccccccccccEEEEccccHHHHccccccccccccccccccccccEEEEEEEEEEcccccccEEEEEEEEEcccccHHHcccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEEEccccccccccccccccccccccccccEEEEEEcccccEEEEEEccccccccccccccccccccHHHHHHHHHHHHccccEEEEEccccccccEEEEHHHHHHHHccccccccEEEEEEcccccccEEEEEEEEEEccccccccccccccEEEEEcccccccccccccccccEEccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHcccccHHcHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccc
ccccccccccccccccccccHHHHHHHHcccccEccccccEEEEcccccHHHHHHcccccHccccccccccccEEEEEEEEEEEccccccEEEEEEEEccccccccccccccccccccccccccHHEEEEccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHcccEEEEEEEEccccccEEEccccEEEEcccEEEcccEEEEEEcccccEEEEEEEccccccccccccEccccHHHHHHHHHHHHHHccccEEEEEccccccccEEEEHHHHHHHHHcccEEEEEEEEEEcccccccEEEEEEEEEccccccccccccccEEEEEEccccccccccccccccEEccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccHHHcccccccccccccccHHHHHHHcHHccccccccHHHHccccccccccccccccccccccccccccccccccHHHcHHHccccccccHHccccccccccHHHHHHcccccccHHHHHHHcccccHccccccccccccccccccccccccccccccccccccHccccccHHHccccccccccccccccccccccccccHccccHHHccccccccccccccccccEcccccccHHHHHHHHHccccHHHHccccccccccHHHccccHHHHHccccHHHHccccccccccHHHHHHHHccHHHHHccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccHHccccccccccccHHHHHcccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccHHccccccccccccHHHHHcHccccccccccccccccccccccccEccccccccccccccHHHHHcEcEEEEEEEcc
mkppangflpssaegerKTINSELWhacagplvslppvgslvvyfpqghsEQVAASMQKEndfipnypnlpsKLICMLHsvtlhadpetdEVYAQMTLQPVNKYEKEAILASDmglkqnrqpteFFCKtltasdtsthggfsvprraaekifppldysmqppaqeivardlhdttwtfrhiyrgqpkrhllttgWSVFVStkrlfagdsvlFIRDEKSQLLLGIRRAnrqqpalsssvissdsMHIGILAAAAHaaannspftifynpraspsefvipLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYmgtitsisdldplrwknsqwrnlqvgwdestagerpsrvslwetepvvtpfyicpppffrpkfpkqpgmpddesDIENAFKRampwlgddfgmkdatssifpglSLVQWMSMQqnnqfpaaqsgffpsmvsstglhsnfgtddpsklLNFQAsalaapnlqfskanpqnqvnqlpqspiaWTQQQQLQHLLQnplnqqqqqhpQLHQQRQQQQQLLHPQQSQQQQQQQQnhhhhnqqpppppqlqpsptpphsqsqsqspvpqrpqqqpqqqqqqpqqqiflpthvnngvlvpnanqnvqqptvysqlqqpqlltsntqapqgilsnnknsyqltslpqdsQFQQQMeqstgplqrqqQQSQLQQSSLQFLQQSLAQRAQQQPQVQQLAQQSMSDQQLQSQLQQKLQQQQQQQLlspagsllqpQLLQQQLAHQQNqqlsqlppsqnhqqqlsnnlsasvlvqpqqlpmnqpqnqnrpltgtrahsnhtdgdapscstspssnncqispsnflnrnqqgpamlmgdsvvepssnLVQELHsksdarikhelpiskgpehlkyngsmtdqveasssgtsycldpgniqqnfslptycldgdtqshprnslpfvanidgmapdtllsrgydsQKDLHNLLsnyggtprdieTELStaaissqsfavpnipfkpacsnevgineagvlgnglwanqTQRMRTFTKVCYAIYSL
mkppangflpssaeGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKENDFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLtasdtsthggfsvpRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIyrgqpkrhllttGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITsisdldplrwkNSQWRNLqvgwdestagerpsrvslwetepvvTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQFSKANPQNQVNQLPQSPIAWTQQQQLQHLLQNPLNQQQQQHPQLHQQRQQQQQLLHPQQSQQQQQQQQNHHHHNQQPPPPPQLQPSPTPPHSQSQSQSPVPQRPQQQPQQQQQQPQQQIFLPTHVNNGVLVPNANQNVQQPTVYSQLQQPQLLTSNTQAPQGILSNNKNSYQLTSLPQDSQFQQQMEQSTGPLQRQQQQSQLQQSSLQFLQQSLAQRAQQQPQVQQLAQQSMSDQQLQSQLQQKLQQQQQQQLLSPAGSLLQPQLLQQQLAHQQNQQLSQLPPSQNHQQQLSNNLSASVLVQPQQLPMNQPQNQNRPLTGTRAHSNHTDGDAPSCSTSPSSNNCQISPSNFLNRNQQGPAMLMGDSVVEPSSNLVQELHsksdarikhelpiskgpehlkyNGSMTDQVEASSSGTSYCLDPGNIQQNFSLPTYCLDGDTQSHPRNSLPFVANIDGMAPDTLLSRGYDSQKDLHNLLSNYGGTPRDIETELSTAAISSQSFAVPNIPFKPACSNEVGINEAGVLGNGLwanqtqrmrTFTKVCYAIYSL
MKPPANGFLPSSAEGERKTINSELWHACAgplvslppvgslvvYFPQGHSEQVAASMQKENDFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALsssvissdsMHIGILaaaahaaaNNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVVTPFYICpppffrpkfpkqpGMPDDESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQFSKANPQNQVNQLPQSPIAWTqqqqlqhllqnplnqqqqqhpqlhqqrqqqqqllhpqqsqqqqqqqqnhhhhnqqpppppqlqpsptpphsqsqsqspvpqrpqqqpqqqqqqpqqqIFLPTHVNNGVLVPNANQNVQQPTVYSQLQQPQLLTSNTQAPQGILSNNKNSYQLTSLPqdsqfqqqmeqSTGplqrqqqqsqlqqsslqflqqslaqraqqqpqvqqlaqqsmsdqqlqsqlqqklqqqqqqqllspagsllqpqllqqqlahqqnqqlsqlppsqnhqqqlsnnlsasvlvqpqqlpmnqpqnqnRPLTGTRAHSNHTDGDApscstspssnncQISPSNFLNRNQQGPAMLMGDSVVEPSSNLVQELHSKSDARIKHELPISKGPEHLKYNGSMTDQVEASSSGTSYCLDPGNIQQNFSLPTYCLDGDTQSHPRNSLPFVANIDGMAPDTLLSRGYDSQKDLHNLLSNYGGTPRDIETELSTAAISSQSFAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQRMRTFTKVCYAIYSL
********************NSELWHACAGPLVSLPPVGSLVVYFPQGH************DFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILAS**********TEFFCKTLTA*****************KIFPPLDY*****AQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRR****************SMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTA****SRVSLWETEPVVTPFYICPPPFFR*******************FKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSM*********************************************************************************************************************************************************************************VL***********************************************************************************************************************************************************************************************************************************************************************************************YCLDPGNIQQNFSLPTYCLDG*********LPFVANIDGMAPDTLLS********LHNLLSNYG************AAISSQSFAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQRMRTFTKVCYAIY**
*******************INSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVA*************PNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNK**********************FCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRR**********************LAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVVT************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************FS***YCLDGDTQSHPRNSLPFVANIDGMAPDTLLSRGYDSQKDLHN*************************FAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQRMRTFTKVCYAIYSL
MKPPANGFLPSSAEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKENDFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRA************SSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDE*********VSLWETEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQFSKANPQNQVNQLPQSPIAWTQQQQLQHLLQNPL**********************************************************************************QQIFLPTHVNNGVLVPNANQNVQQPTVYSQLQQPQLLTSNTQAPQGILSNNKNSYQLTSLP*****************************LQFLQ******************************************LSPAGSLLQPQLLQQ***********************SNNLSASVLVQPQQLPMNQPQ*******************************CQISPSNFLNRNQQGPAMLMGDSVVEPSSNLVQELHSKSDARIKHELPISKGPEHLKYNGSMTDQVEASSSGTSYCLDPGNIQQNFSLPTYCLDGDTQSHPRNSLPFVANIDGMAPDTLLSRGYDSQKDLHNLLSNYGGTPRDIETELSTAAISSQSFAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQRMRTFTKVCYAIYSL
*****************KTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKENDFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVN*****AILASDM***QNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQ***LS*S**SSD*MHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVVTPFYICPPPFFRPKFPKQPGMPDDE*DIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASA*************************************************************************************************************************************************************************************S***D**********************************************************************************************************************************************************************************GP*****DSVVEPSSNL*QELHS*SD*RIKHE*******EHLKYNGSMTDQVEASSSGTSYCLDPGNIQQNFSLPTYCLDGDTQSHPRNSLPFVANIDGMAPDTLLSRGYDSQKDLHNLLSNYGGTPRDIETELSTA*****SFAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQRMRTFTKVCYAIYSL
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MKPPANGFLPSSAEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKENDFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQFSKANPQNQVNQLPQSPIAWTQQQQLQHLLQNPLNQQQQQHPQLHQQRQQQQQLLHPQQSQQQQQQQQNHHHHNQQPPPPPQLQPSPTPPHSQSQSQSPVPQRPQQQPQQQQQQPQQQIFLPTHVNNGVLVPNANQNVQQPTVYSQLQQPQLLTSNTQAPQGILSNNKNSYQLTSLPQDSQFQQQMEQSTGPLQRQQQQSQLQQSSLQFLQQSLAQRAQQQPQVQQLAQQSMSDQQLQSQLQQKLQQQQQQQLLSPAGSLLQPQLLQQQLAHQQNQQLSQLPPSQNHQQQLSNNLSASVLVQPQQLPMNQPQNQNRPLTGTRAHSNHTDGDAPSCSTSPSSNNCQISPSNFLNRNQQGPAMLMGDSVVEPSSNLVQELHSKSDARIKHELPISKGPEHLKYNGSMTDQVEASSSGTSYCLDPGNIQQNFSLPTYCLDGDTQSHPRNSLPFVANIDGMAPDTLLSRGYDSQKDLHNLLSNYGGTPRDIETELSTAAISSQSFAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQRMRTFTKVCYAIYSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1020 2.2.26 [Sep-21-2011]
Q8RYC81086 Auxin response factor 19 yes no 0.473 0.444 0.840 0.0
P93022 1164 Auxin response factor 7 O no no 0.476 0.417 0.803 0.0
A3B9A01055 Auxin response factor 16 yes no 0.455 0.440 0.786 0.0
A2YAA51055 Auxin response factor 16 N/A no 0.455 0.440 0.784 0.0
Q6Z2W31142 Auxin response factor 5 O yes no 0.511 0.457 0.663 0.0
Q0D9R7 1161 Auxin response factor 19 yes no 0.433 0.380 0.746 0.0
Q6YZW01116 Auxin response factor 21 no no 0.445 0.406 0.681 1e-178
Q9ZTX8935 Auxin response factor 6 O no no 0.403 0.440 0.681 1e-159
Q6H6V4908 Auxin response factor 6 O no no 0.436 0.490 0.633 1e-156
A2X1A1908 Auxin response factor 6 O N/A no 0.436 0.490 0.633 1e-156
>sp|Q8RYC8|ARFS_ARATH Auxin response factor 19 OS=Arabidopsis thaliana GN=ARF19 PE=1 SV=2 Back     alignment and function desciption
 Score =  848 bits (2192), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/483 (84%), Positives = 446/483 (92%)

Query: 1   MKPPANGFLPSSAEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKE 60
           MK P+NGFLPSS EGE+K INS+LWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQK+
Sbjct: 1   MKAPSNGFLPSSNEGEKKPINSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQ 60

Query: 61  NDFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNR 120
            DFIPNYPNLPSKLIC+LHSVTLHAD ETDEVYAQMTLQPVNKY++EA+LASDMGLK NR
Sbjct: 61  TDFIPNYPNLPSKLICLLHSVTLHADTETDEVYAQMTLQPVNKYDREALLASDMGLKLNR 120

Query: 121 QPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRH 180
           QPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLD+SMQPPAQEIVA+DLHDTTWTFRH
Sbjct: 121 QPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRH 180

Query: 181 IYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVIS 240
           IYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLF+RDEKSQL+LGIRRANRQ P LSSSVIS
Sbjct: 181 IYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFVRDEKSQLMLGIRRANRQTPTLSSSVIS 240

Query: 241 SDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMF 300
           SDSMHIGILAAAAHA AN+SPFTIF+NPRASPSEFV+PLAKYNKA+Y QVSLGMRFRMMF
Sbjct: 241 SDSMHIGILAAAAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLGMRFRMMF 300

Query: 301 ETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVVTP 360
           ETE+ GVRRYMGT+T ISDLDP+RWK SQWRNLQVGWDESTAG+RPSRVS+WE EPV+TP
Sbjct: 301 ETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQVGWDESTAGDRPSRVSIWEIEPVITP 360

Query: 361 FYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWM 420
           FYICPPPFFRPK+P+QPGMPDDE D+ENAFKRAMPW+G+DFGMKDA SS+FPGLSLVQWM
Sbjct: 361 FYICPPPFFRPKYPRQPGMPDDELDMENAFKRAMPWMGEDFGMKDAQSSMFPGLSLVQWM 420

Query: 421 SMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQFSKANPQNQ 480
           SMQQNN    + +   PS +SS  L +NF ++DPSKLLNFQ+  L++ N QF+K N  N 
Sbjct: 421 SMQQNNPLSGSATPQLPSALSSFNLPNNFASNDPSKLLNFQSPNLSSANSQFNKPNTVNH 480

Query: 481 VNQ 483
           ++Q
Sbjct: 481 ISQ 483
Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7.
Arabidopsis thaliana (taxid: 3702)
>sp|P93022|ARFG_ARATH Auxin response factor 7 OS=Arabidopsis thaliana GN=ARF7 PE=1 SV=2 Back     alignment and function description
>sp|A3B9A0|ARFP_ORYSJ Auxin response factor 16 OS=Oryza sativa subsp. japonica GN=ARF16 PE=2 SV=1 Back     alignment and function description
>sp|A2YAA5|ARFP_ORYSI Auxin response factor 16 OS=Oryza sativa subsp. indica GN=ARF16 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z2W3|ARFE_ORYSJ Auxin response factor 5 OS=Oryza sativa subsp. japonica GN=ARF5 PE=2 SV=2 Back     alignment and function description
>sp|Q0D9R7|ARFS_ORYSJ Auxin response factor 19 OS=Oryza sativa subsp. japonica GN=ARF19 PE=2 SV=2 Back     alignment and function description
>sp|Q6YZW0|ARFU_ORYSJ Auxin response factor 21 OS=Oryza sativa subsp. japonica GN=ARF21 PE=2 SV=2 Back     alignment and function description
>sp|Q9ZTX8|ARFF_ARATH Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=1 SV=2 Back     alignment and function description
>sp|Q6H6V4|ARFF_ORYSJ Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1 Back     alignment and function description
>sp|A2X1A1|ARFF_ORYSI Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1020
3574793691120 Auxin response factor [Medicago truncatu 0.481 0.438 0.879 0.0
2555503591119 Auxin response factor, putative [Ricinus 0.482 0.439 0.904 0.0
2240692041057 predicted protein [Populus trichocarpa] 0.493 0.475 0.899 0.0
356530459 1125 PREDICTED: uncharacterized protein LOC10 0.494 0.448 0.871 0.0
297738525878 unnamed protein product [Vitis vinifera] 0.451 0.525 0.898 0.0
2254446471084 PREDICTED: auxin response factor 19-like 0.480 0.452 0.892 0.0
356556410 1122 PREDICTED: uncharacterized protein LOC10 0.492 0.447 0.870 0.0
356547962 1131 PREDICTED: uncharacterized protein LOC10 0.481 0.434 0.883 0.0
356565674 1136 PREDICTED: uncharacterized protein LOC10 0.481 0.432 0.881 0.0
4494881151097 PREDICTED: auxin response factor 19-like 0.480 0.446 0.890 0.0
>gi|357479369|ref|XP_003609970.1| Auxin response factor [Medicago truncatula] gi|355511025|gb|AES92167.1| Auxin response factor [Medicago truncatula] Back     alignment and taxonomy information
 Score =  904 bits (2336), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/491 (87%), Positives = 461/491 (93%)

Query: 1   MKPPANGFLPSSAEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKE 60
           MK P NG++P+S EGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQK+
Sbjct: 1   MKAPNNGYMPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQ 60

Query: 61  NDFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNR 120
            DFIP+YPNLPSKLICMLH+V LHADPETDEVYAQMTLQPVNKY+K+AILASD GLKQNR
Sbjct: 61  TDFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKDAILASDFGLKQNR 120

Query: 121 QPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRH 180
           QPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLD+SMQPPAQE+VA+DLHD TW FRH
Sbjct: 121 QPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDNTWAFRH 180

Query: 181 IYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVIS 240
           IYRGQPKRHLLTTGWSVF+STKRLFAGDSVLFIRDEK QLLLG+RRANRQQPALSSSVIS
Sbjct: 181 IYRGQPKRHLLTTGWSVFISTKRLFAGDSVLFIRDEKQQLLLGLRRANRQQPALSSSVIS 240

Query: 241 SDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMF 300
           SDSMHIGILAAAAHAAANNSPFTI+YNPRASPSEFV+PLAKYNKAMYTQVSLGMRFRMMF
Sbjct: 241 SDSMHIGILAAAAHAAANNSPFTIYYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMF 300

Query: 301 ETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVVTP 360
           ETEESGVRRYMGT+T ISDLDP+RWKNSQWRNLQVGWDESTAGERPSRVS+W+ EPVVTP
Sbjct: 301 ETEESGVRRYMGTVTGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTP 360

Query: 361 FYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWM 420
           FYICPPPFFR  FP  PGMPDD SD+EN+FKRAMPWLGDDFGMKDA+SS+FPGLSLVQWM
Sbjct: 361 FYICPPPFFRQNFPGHPGMPDDGSDVENSFKRAMPWLGDDFGMKDASSSVFPGLSLVQWM 420

Query: 421 SMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQFSKANPQNQ 480
           SMQQ NQF  AQSG FPSM+SS  LHSN  TDDPSKLL+FQA AL+APNLQF+K N  NQ
Sbjct: 421 SMQQKNQFSGAQSGCFPSMLSSNTLHSNLSTDDPSKLLSFQAPALSAPNLQFNKPNLPNQ 480

Query: 481 VNQLPQSPIAW 491
           +NQL QSP +W
Sbjct: 481 INQLQQSPTSW 491

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255550359|ref|XP_002516230.1| Auxin response factor, putative [Ricinus communis] gi|223544716|gb|EEF46232.1| Auxin response factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224069204|ref|XP_002326300.1| predicted protein [Populus trichocarpa] gi|222833493|gb|EEE71970.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356530459|ref|XP_003533798.1| PREDICTED: uncharacterized protein LOC100804628 [Glycine max] Back     alignment and taxonomy information
>gi|297738525|emb|CBI27770.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225444647|ref|XP_002276637.1| PREDICTED: auxin response factor 19-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356556410|ref|XP_003546519.1| PREDICTED: uncharacterized protein LOC100815277 [Glycine max] Back     alignment and taxonomy information
>gi|356547962|ref|XP_003542373.1| PREDICTED: uncharacterized protein LOC100805456 [Glycine max] Back     alignment and taxonomy information
>gi|356565674|ref|XP_003551063.1| PREDICTED: uncharacterized protein LOC100816054 [Glycine max] Back     alignment and taxonomy information
>gi|449488115|ref|XP_004157943.1| PREDICTED: auxin response factor 19-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1020
TAIR|locus:22022051086 ARF19 "auxin response factor 1 0.477 0.448 0.751 2.5e-264
TAIR|locus:2204237935 ARF6 "auxin response factor 6" 0.462 0.504 0.551 1.1e-133
TAIR|locus:2152642811 ARF8 "auxin response factor 8" 0.451 0.568 0.537 6.1e-131
TAIR|locus:2035454902 MP "MONOPTEROS" [Arabidopsis t 0.455 0.515 0.529 2.7e-126
TAIR|locus:2174013859 ARF2 "auxin response factor 2" 0.330 0.392 0.495 1.3e-86
TAIR|locus:2025991665 ARF1 "auxin response factor 1" 0.326 0.500 0.479 6.4e-83
TAIR|locus:2175098788 ARF4 "auxin response factor 4" 0.340 0.440 0.473 3.2e-81
TAIR|locus:2138096638 ARF9 "auxin response factor 9" 0.324 0.518 0.463 1.4e-80
TAIR|locus:2039124622 ARF11 "auxin response factor 1 0.322 0.528 0.470 1.7e-78
TAIR|locus:2057609608 ETT "ETTIN" [Arabidopsis thali 0.319 0.536 0.470 1.5e-76
TAIR|locus:2202205 ARF19 "auxin response factor 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1958 (694.3 bits), Expect = 2.5e-264, Sum P(3) = 2.5e-264
 Identities = 366/487 (75%), Positives = 405/487 (83%)

Query:     1 MKPPANGFLPSSAEGERKTINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKE 60
             MK P+NGFLPSS EGE+K INS+LWHACA              YFPQGHSEQVAASMQK+
Sbjct:     1 MKAPSNGFLPSSNEGEKKPINSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQ 60

Query:    61 NDFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNR 120
              DFIPNYPNLPSKLIC+LHSVTLHAD ETDEVYAQMTLQPVNKY++EA+LASDMGLK NR
Sbjct:    61 TDFIPNYPNLPSKLICLLHSVTLHADTETDEVYAQMTLQPVNKYDREALLASDMGLKLNR 120

Query:   121 QPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRH 180
             QPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLD+SMQPPAQEIVA+DLHDTTWTFRH
Sbjct:   121 QPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRH 180

Query:   181 IYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALXXXXXX 240
             IYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLF+RDEKSQL+LGIRRANRQ P L      
Sbjct:   181 IYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFVRDEKSQLMLGIRRANRQTPTLSSSVIS 240

Query:   241 XXXMHIGILXXXXXXXXNNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMF 300
                MHIGIL        N+SPFTIF+NPRASPSEFV+PLAKYNKA+Y QVSLGMRFRMMF
Sbjct:   241 SDSMHIGILAAAAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLGMRFRMMF 300

Query:   301 ETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVVTP 360
             ETE+ GVRRYMGT+T ISDLDP+RWK SQWRNLQVGWDESTAG+RPSRVS+WE EPV+TP
Sbjct:   301 ETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQVGWDESTAGDRPSRVSIWEIEPVITP 360

Query:   361 FYICXXXXXXXXXXXXXGMPDDESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWM 420
             FYIC             GMPDDE D+ENAFKRAMPW+G+DFGMKDA SS+FPGLSLVQWM
Sbjct:   361 FYICPPPFFRPKYPRQPGMPDDELDMENAFKRAMPWMGEDFGMKDAQSSMFPGLSLVQWM 420

Query:   421 SMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQFSKANPQNQ 480
             SMQQNN    + +   PS +SS  L +NF ++DPSKLLNFQ+  L++ N QF+K N  N 
Sbjct:   421 SMQQNNPLSGSATPQLPSALSSFNLPNNFASNDPSKLLNFQSPNLSSANSQFNKPNTVNH 480

Query:   481 VNQLPQS 487
             ++Q  Q+
Sbjct:   481 ISQQMQA 487
GO:0005634 "nucleus" evidence=ISM;IEA;IDA;TAS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0009725 "response to hormone stimulus" evidence=IEA
GO:0009733 "response to auxin stimulus" evidence=RCA;IMP;NAS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0048366 "leaf development" evidence=IGI
GO:0048527 "lateral root development" evidence=IGI;RCA
GO:0009723 "response to ethylene stimulus" evidence=IMP
GO:0003677 "DNA binding" evidence=IDA
GO:0010311 "lateral root formation" evidence=IGI
GO:0007155 "cell adhesion" evidence=RCA
GO:0009741 "response to brassinosteroid stimulus" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0010583 "response to cyclopentenone" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
GO:0043565 "sequence-specific DNA binding" evidence=IDA
GO:0046983 "protein dimerization activity" evidence=IDA
TAIR|locus:2204237 ARF6 "auxin response factor 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152642 ARF8 "auxin response factor 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035454 MP "MONOPTEROS" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174013 ARF2 "auxin response factor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025991 ARF1 "auxin response factor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175098 ARF4 "auxin response factor 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138096 ARF9 "auxin response factor 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039124 ARF11 "auxin response factor 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057609 ETT "ETTIN" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A3B9A0ARFP_ORYSJNo assigned EC number0.78660.45580.4407yesno
Q8RYC8ARFS_ARATHNo assigned EC number0.84050.47350.4447yesno
Q0D9R7ARFS_ORYSJNo assigned EC number0.74610.43330.3807yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00280060
hypothetical protein (1057 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1020
pfam0650783 pfam06507, Auxin_resp, Auxin response factor 9e-48
pfam0236297 pfam02362, B3, B3 DNA binding domain 9e-30
smart0101996 smart01019, B3, B3 DNA binding domain 2e-28
cd1001798 cd10017, B3_DNA, Plant-specific B3-DNA binding dom 2e-22
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 2e-15
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 1e-14
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 6e-13
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 2e-12
PRK11281 1113 PRK11281, PRK11281, hypothetical protein; Provisio 5e-12
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 4e-11
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 4e-11
PRK102631355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 3e-09
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 4e-09
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 9e-09
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 5e-08
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 5e-08
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 1e-07
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 4e-07
cd10015109 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains o 8e-07
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 1e-06
TIGR00618 1042 TIGR00618, sbcc, exonuclease SbcC 1e-06
pfam11498476 pfam11498, Activator_LAG-3, Transcriptional activa 2e-06
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 3e-06
PRK12757256 PRK12757, PRK12757, cell division protein FtsN; Pr 3e-06
PRK03427333 PRK03427, PRK03427, cell division protein ZipA; Pr 4e-06
PRK00286438 PRK00286, xseA, exodeoxyribonuclease VII large sub 4e-06
pfam13388422 pfam13388, DUF4106, Protein of unknown function (D 7e-06
PRK03427333 PRK03427, PRK03427, cell division protein ZipA; Pr 1e-05
PRK102631355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 2e-05
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 2e-05
COG3264 835 COG3264, COG3264, Small-conductance mechanosensiti 2e-05
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 4e-05
PRK03427333 PRK03427, PRK03427, cell division protein ZipA; Pr 4e-05
PRK12757256 PRK12757, PRK12757, cell division protein FtsN; Pr 5e-05
COG3264 835 COG3264, COG3264, Small-conductance mechanosensiti 5e-05
cd10016142 cd10016, EcoRII_N, N-terminal domain of type IIE r 8e-05
pfam13779820 pfam13779, DUF4175, Domain of unknown function (DU 1e-04
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 1e-04
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 1e-04
PRK12757256 PRK12757, PRK12757, cell division protein FtsN; Pr 1e-04
PRK102461047 PRK10246, PRK10246, exonuclease subunit SbcC; Prov 1e-04
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 2e-04
pfam11498476 pfam11498, Activator_LAG-3, Transcriptional activa 2e-04
PRK03427333 PRK03427, PRK03427, cell division protein ZipA; Pr 2e-04
pfam13388422 pfam13388, DUF4106, Protein of unknown function (D 2e-04
PRK10246 1047 PRK10246, PRK10246, exonuclease subunit SbcC; Prov 2e-04
PRK11281 1113 PRK11281, PRK11281, hypothetical protein; Provisio 3e-04
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 3e-04
pfam13388422 pfam13388, DUF4106, Protein of unknown function (D 3e-04
pfam13388422 pfam13388, DUF4106, Protein of unknown function (D 3e-04
COG5624505 COG5624, TAF61, Transcription initiation factor TF 3e-04
TIGR01628562 TIGR01628, PABP-1234, polyadenylate binding protei 3e-04
PRK10927319 PRK10927, PRK10927, essential cell division protei 3e-04
COG4372499 COG4372, COG4372, Uncharacterized protein conserve 5e-04
smart00935140 smart00935, OmpH, Outer membrane protein (OmpH-lik 6e-04
PRK11281 1113 PRK11281, PRK11281, hypothetical protein; Provisio 7e-04
COG3264 835 COG3264, COG3264, Small-conductance mechanosensiti 7e-04
COG5624505 COG5624, TAF61, Transcription initiation factor TF 7e-04
PRK12757256 PRK12757, PRK12757, cell division protein FtsN; Pr 8e-04
COG1570440 COG1570, XseA, Exonuclease VII, large subunit [DNA 8e-04
TIGR01628562 TIGR01628, PABP-1234, polyadenylate binding protei 9e-04
PRK00286438 PRK00286, xseA, exodeoxyribonuclease VII large sub 0.001
TIGR01628562 TIGR01628, PABP-1234, polyadenylate binding protei 0.001
PRK10920390 PRK10920, PRK10920, putative uroporphyrinogen III 0.001
smart00818165 smart00818, Amelogenin, Amelogenins, cell adhesion 0.001
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 0.001
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 0.001
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 0.002
PRK00286438 PRK00286, xseA, exodeoxyribonuclease VII large sub 0.002
pfam13388422 pfam13388, DUF4106, Protein of unknown function (D 0.002
PRK10920390 PRK10920, PRK10920, putative uroporphyrinogen III 0.002
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 0.002
PRK14971614 PRK14971, PRK14971, DNA polymerase III subunits ga 0.002
TIGR01000457 TIGR01000, bacteriocin_acc, bacteriocin secretion 0.002
pfam03157779 pfam03157, Glutenin_hmw, High molecular weight glu 0.002
TIGR00618 1042 TIGR00618, sbcc, exonuclease SbcC 0.003
PRK03427333 PRK03427, PRK03427, cell division protein ZipA; Pr 0.003
pfam07223357 pfam07223, DUF1421, Protein of unknown function (D 0.003
pfam03938157 pfam03938, OmpH, Outer membrane protein (OmpH-like 0.004
pfam04652315 pfam04652, DUF605, Vta1 like 0.004
>gnl|CDD|191545 pfam06507, Auxin_resp, Auxin response factor Back     alignment and domain information 
 Score =  163 bits (416), Expect = 9e-48
 Identities = 55/83 (66%), Positives = 67/83 (80%)

Query: 252 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYM 311
           AAHAA+  SPF +FYNPRAS SEFV+P AKY KAM    S+GMRF+M FETE+S  RR+ 
Sbjct: 1   AAHAASTGSPFHVFYNPRASTSEFVVPYAKYLKAMNNPFSVGMRFKMRFETEDSSERRFS 60

Query: 312 GTITSISDLDPLRWKNSQWRNLQ 334
           GTI+ +SDLDP+RW NS+WR+LQ
Sbjct: 61  GTISGVSDLDPIRWPNSKWRSLQ 83

A conserved region of auxin-responsive transcription factors. Length = 83
>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|197381 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains of BfiI, EcoRII and plant B3 proteins Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC Back     alignment and domain information
>gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed Back     alignment and domain information
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional Back     alignment and domain information
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|197382 cd10016, EcoRII_N, N-terminal domain of type IIE restriction endonuclease EcoRII and similar proteins Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional Back     alignment and domain information
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) Back     alignment and domain information
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional Back     alignment and domain information
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) Back     alignment and domain information
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) Back     alignment and domain information
>gnl|CDD|227911 COG5624, TAF61, Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family Back     alignment and domain information
>gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional Back     alignment and domain information
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like) Back     alignment and domain information
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|227911 COG5624, TAF61, Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional Back     alignment and domain information
>gnl|CDD|224486 COG1570, XseA, Exonuclease VII, large subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family Back     alignment and domain information
>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed Back     alignment and domain information
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family Back     alignment and domain information
>gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed Back     alignment and domain information
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) Back     alignment and domain information
>gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|233230 TIGR01000, bacteriocin_acc, bacteriocin secretion accessory protein Back     alignment and domain information
>gnl|CDD|111993 pfam03157, Glutenin_hmw, High molecular weight glutenin subunit Back     alignment and domain information
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) Back     alignment and domain information
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like) Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1020
PF0650783 Auxin_resp: Auxin response factor; InterPro: IPR01 100.0
PF02362100 B3: B3 DNA binding domain; InterPro: IPR003340 Two 99.77
KOG06441113 consensus Uncharacterized conserved protein, conta 99.55
PF09217156 EcoRII-N: Restriction endonuclease EcoRII, N-termi 98.33
PF03754114 DUF313: Domain of unknown function (DUF313) ; Inte 97.78
KOG35982220 consensus Thyroid hormone receptor-associated prot 88.9
KOG35982220 consensus Thyroid hormone receptor-associated prot 87.31
PF11498468 Activator_LAG-3: Transcriptional activator LAG-3; 80.3
>PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors Back     alignment and domain information 
Probab=100.00  E-value=5.5e-36  Score=270.19  Aligned_cols=83  Identities=64%  Similarity=1.097  Sum_probs=81.7

Q ss_pred             HHHHHhcCCcEEEEEcCCCCCCccccchHhHhHHHhcCccccceeeeeeecccccccceeeEEEEeccCCCCCCCCCCcc
Q 001728          252 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWR  331 (1020)
Q Consensus       252 Aahaaat~~~F~V~Y~PRas~sEFVVp~~kY~kAm~~~Ws~GMRFKM~FEtEdss~rwy~GTI~gVsd~DP~rWp~S~WR  331 (1020)
                      |+|||+++++|+|+||||++++||||+++||++||+++|++||||||+||+||+++++|+|||+||++.||+|||+|+||
T Consensus         1 A~~aa~~~~~F~V~Y~PRa~~sEFVV~~~k~~~al~~~~~~GmRfkM~fE~eds~~~~~~GtI~~v~~~dp~~w~~S~WR   80 (83)
T PF06507_consen    1 AAHAAATGSPFEVFYYPRASPSEFVVPASKYDKALNHPWSVGMRFKMRFETEDSSERRWQGTIVGVSDLDPIRWPGSKWR   80 (83)
T ss_pred             ChhHhhcCCeEEEEECCCCCCcceEEEHHHHHHHhcCCCCCCcEEEEEeccCCCccceeeeEEeEeeccCCCCCCCCCcc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eee
Q 001728          332 NLQ  334 (1020)
Q Consensus       332 ~Lq  334 (1020)
                      |||
T Consensus        81 ~Lq   83 (83)
T PF06507_consen   81 MLQ   83 (83)
T ss_pred             cCc
Confidence            996

The plant hormone auxin (indole-3-acetic acid) can regulate the gene expression of several families, including Aux/IAA, GH3 and SAUR families. Two related families of proteins, Aux/IAA proteins (IPR003311 from INTERPRO) and the auxin response factors (ARF), are key regulators of auxin-modulated gene expression []. There are multiple ARF proteins, some of which activate, while others repress transcription. ARF proteins bind to auxin-responsive cis-acting promoter elements (AuxREs) using an N-terminal DNA-binding domain. It is thought that Aux/IAA proteins activate transcription by modifying ARF activity through the C-terminal protein-protein interaction domains (IPR011525 from INTERPRO) found in both Aux/IAA and ARF proteins. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0009725 response to hormone stimulus, 0005634 nucleus
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV Back     alignment and domain information
>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function Back     alignment and domain information
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription] Back     alignment and domain information
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription] Back     alignment and domain information
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1020
1wid_A130 Solution Structure Of The B3 Dna-Binding Domain Of 2e-07
>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130 Back     alignment and structure 
Iteration: 1

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 125 FFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRG 184
            F K +T SD        +P+  AEK FP    ++      +   D++   W FR+ Y  
Sbjct: 13  LFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWN 72
Query: 185 QPKRHLLTTGWSVFVSTKRLFAGDSVLFIRD--EKSQLLLG 223
             + ++LT GWS FV  K L AGD V F R   +  QL +G
Sbjct: 73  SSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIG 113
  Database: pdbaa

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1020
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 3e-43
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-11
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 3e-11
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 8e-11
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 3e-10
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 9e-10
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-09
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 1e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 4e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 5e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 4e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
3ghg_B461 Fibrinogen beta chain; triple-stranded coiled coil 8e-06
3fz3_A531 Prunin; TREE NUT allergen, allergy, amandin, almon 2e-05
3lj5_A725 Portal protein, protein GP1; DNA ejection, molecul 4e-05
1yvl_A 683 Signal transducer and activator of transcription 1 2e-04
1yvl_A 683 Signal transducer and activator of transcription 1 6e-04
3ghg_C411 Fibrinogen gamma chain; triple-stranded coiled coi 4e-04
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130 Back     alignment and structure
 Score =  152 bits (385), Expect = 3e-43
 Identities = 39/125 (31%), Positives = 53/125 (42%)

Query: 117 KQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTW 176
              R     F K +T SD        +P+  AEK FP    ++      +   D++   W
Sbjct: 5   SSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVW 64

Query: 177 TFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSS 236
            FR+ Y    + ++LT GWS FV  K L AGD V F R       L I   +R    L +
Sbjct: 65  RFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDLDA 124

Query: 237 SVISS 241
           S  SS
Sbjct: 125 SGPSS 129
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H* Length = 461 Back     alignment and structure
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A Length = 531 Back     alignment and structure
>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA packaging podoviridae, virus assembly, tail tube, trunk domain; 7.50A {Enterobacteria phage P22} Length = 725 Back     alignment and structure
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens} Length = 683 Back     alignment and structure
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens} Length = 683 Back     alignment and structure
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Length = 411 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1020
d1wida_117 b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre 5e-39
d1na6a1175 b.142.1.1 (A:4-178) Restriction endonuclease EcoRI 2e-25
d1yela1102 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid 4e-15
d1f5na1300 a.114.1.1 (A:284-583) Interferon-induced guanylate 0.004
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117 Back     information, alignment and structure

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  138 bits (349), Expect = 5e-39
 Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 2/115 (1%)

Query: 120 RQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFR 179
           R     F K +T SD        +P+  AEK FP    ++      +   D++   W FR
Sbjct: 1   RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFR 60

Query: 180 HIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKS--QLLLGIRRANRQQP 232
           + Y    + ++LT GWS FV  K L AGD V F R      QL +G +  +    
Sbjct: 61  YSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDL 115
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175 Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102 Back     information, alignment and structure
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1020
d1wida_117 DNA-binding protein RAV1 {Thale cress (Arabidopsis 99.92
d1na6a1175 Restriction endonuclease EcoRII, N-terminal domain 99.79
d1yela1102 At1g16640 {Thale cress (Arabidopsis thaliana) [Tax 99.43
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=1.2e-24  Score=188.26  Aligned_cols=109  Identities=31%  Similarity=0.513  Sum_probs=102.0

Q ss_pred             CCEEEEEECCCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCCHHHHCC
Q ss_conf             73069995455679987840440312532199999999999608999837998379899994899740342551112113
Q 001728          122 PTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVST  201 (1020)
Q Consensus       122 ~~~sF~KtLTaSDVst~GrLsIPkr~AE~~FPpLD~s~~~PsqeLvvkDlhGkeW~FRhiyRgqprRhlLTTGWS~FVke  201 (1020)
                      ..++|+|+||+|||+++|||+||+.++++|||+++.....++++|.++|.+|++|.|+|+||+..++|+|++||..||++
T Consensus         3 ~~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~~~~~~~~l~~GW~~Fv~~   82 (117)
T d1wida_           3 AEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKE   82 (117)
T ss_dssp             CEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHHH
T ss_pred             CCEEEEEEECCHHCCCCCEEEECHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEEECCHHHHHHH
T ss_conf             76479999111200898889977899997389543456777079999959999999999998899834774577998887


Q ss_pred             CCCCCCCEEEEEEC--CCCCEEEEEEECCCC
Q ss_conf             78888986999973--797399999944688
Q 001728          202 KRLFAGDSVLFIRD--EKSQLLLGIRRANRQ  230 (1020)
Q Consensus       202 KkLvAGDsVVF~R~--e~GeL~VGIRRA~r~  230 (1020)
                      ++|++||+|+|+++  ++++++|++||+...
T Consensus        83 ~~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~~  113 (117)
T d1wida_          83 KNLRAGDVVSFSRSNGQDQQLYIGWKSRSGS  113 (117)
T ss_dssp             TTCCTTCEEEEEECCSSSCCEEEEEECCCSC
T ss_pred             CCCCCCCEEEEEEEECCCCEEEEEEEECCCC
T ss_conf             4999799999999818998899999999999
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure