Citrus Sinensis ID: 001732

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------102

MSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEESELIDETEQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLTSATSGSTNSSGSGLEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHGMRYGQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYALAYFAVFCATFAWGVDSESRASKKRPTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVESKI

cccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHcccccccHHHHHHHHccccHHHHHHHHHHEEccccccccccccccccccccccccccccccEEEEEHHHccccccccccccccccccHHHHHHHHHHcccccccEEEEcccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHEEEEEEEcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHcccHHHHHHHHHHHccccHHccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccEEcccccHHHHHHHHHHHHHccccccccHHHccHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHccc

ccccccccccccccEEEEHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHcccEEEccccEEcccccccccccccccccHHHHHccccccHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccHHHccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHcHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccccccccHHHHHHHHHcHHccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccEccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHEEEEEEHcHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccEEEEEccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHcccccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHHHHccccHHHHccHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHccc

mslagqcngtsrsalwlpIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQrerdpsegpvpridsslcmvLSVTTLTVADIIEEEEselideteqspsnlpkdkqapgrrrKDLVTSLQLLgdfedmltpppfvRSIANQAAAKAIMFISGltvgngyyesvsmnglatsclGNMRHLIVEACIARNLldtsaylwpgyvnasdsnqvpcsiatqmsgwsslmkgspltpsltnalvvtpasslAEIEKVYEIAvngsddekICAATVLCGASlvrgwsvqeNTILFIIKllsppvpadysgseshLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICevfgssipnaswtlssgeefscyavFSNAFTILVRLWrfhkppleqltvdmplvasqlspeYLLLVRNSklasfgtspkdqmkskrfsknikfstdpifmdsfpklKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKinrsgtpltsatsgstnssgsgledvsiklkvpawdileatPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVtrglwkpafmngtdwpspatnlSSIEQQIKKILAatgvdvptvavggnspatlplPLAALVSLTITFKLDKASDRFLALVGLGLsslasscpwpcmpivASLWAQKVKRWNDFlvfsasgtvfhynTDAVVQLLKSCFtstlgltsshnysnggvgallghgfgshfsggispvgpgiLYLRVHRSVRDVMFMKEEILSILMHCVRDiascglpreKLEKLKktkhgmryGQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVqeggesgcmvGMLGGYALAYFAVFCATFawgvdsesraskkrptvlgTHLEFLASALDRKisvgcdcatwRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVESKI

mslagqcngtsrsALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPsegpvpridsslcmVLSVTTLTVADIIEEEESelideteqspsnlpkdkqapgrrrKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLasfgtspkdqmkskrfsknikfstdpifmdsFPKLKRWYRQNEECIASTltglvhgtSVHLIVDALLTKMFRKINRsgtpltsatsgstnssgsglEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEklkktkhgmryGQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYALAYFAVFCATFAWGVDSesraskkrptvLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVESKI

MSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADiieeeeselideteQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLtsatsgstnssgsgLEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNspatlplplaalvsltITFKLDKASDRFlalvglglsslassCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNggvgallghgfgshfsggISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHGMRYGQVSlaaamtraklaaslGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYALAYFAVFCATFAWGVDSESRASKKRPTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEElaltllgvggvgamgaaaqlIVESKI

************SALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQ************IDSSLCMVLSVTTLTVADII********************************VTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLM****LTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSK********************IKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKI************************VSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHGMRYGQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYALAYFAVFCATFAWGVD*********PTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIV****

********GTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRE*DP*EGPVPRIDSSLCMVLSVTTLTVADIIEEEE**************************DLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTV****************CLGNMRHLIVEACIARNLLDTSAYLWPGYVNASD***************SSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASW**SSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRN*****************************IFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMF********************************KVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVA**GNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIAS***************************AMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWF*******************LGGYALAYFAVFCATFAWGVD************LGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVESK*

*********TSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEE*************************KDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASF***********RFSKNIKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSG******************EDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHGMRYGQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYALAYFAVFCATFAWGVD********RPTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVESKI

**********SRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEES*******************PGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLAS******************KFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINR***********************SIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLK*TKHGMRYGQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHG******ESGCMVGMLGGYALAYFAVFCATFAWGVDSESRASKKRPTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVESKI

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1019	2.2.26 [Sep-21-2011]
F4IN69		1275	Mediator of RNA polymeras	yes	no	0.962	0.769	0.640	0.0
Q9LUG9		1309	Mediator of RNA polymeras	no	no	0.976	0.760	0.606	0.0

>sp\|F4IN69\|MD33B_ARATH Mediator of RNA polymerase II transcription subunit 33B OS=Arabidopsis thaliana GN=MED33B PE=1 SV=1	Back alignment and function desciption

 Score = 1268 bits (3280), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1031 (64%), Positives = 785/1031 (76%), Gaps = 50/1031 (4%)

Query: 10   TSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLG------- 62
            TS SALWLPIDLF ED MDGTQ AA SAVE LTGLVKALQ  N T+WHD FL        
Sbjct: 268  TSDSALWLPIDLFFEDIMDGTQAAAASAVENLTGLVKALQAANSTSWHDAFLALWLAALR 327

Query: 63   ------------LWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEESE 110
                         ++  L +L  ERDP EGPVPR D+ LC++LSVT L VA+IIEEEES+
Sbjct: 328  LVQRENLCLRYCFFMHMLEILSEERDPIEGPVPRTDTFLCVLLSVTPLAVANIIEEEESQ 387

Query: 111  LIDETEQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMF 170
             ID+T  SPSN  K+K+  G+ R+ L+ SLQ LGD+E +LTPP  V+S+ANQAAAKAIMF
Sbjct: 388  WIDQTSSSPSNQWKEKK--GKCRQGLINSLQQLGDYESLLTPPRSVQSVANQAAAKAIMF 445

Query: 171  ISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIAR-NLLDTSAYLWPGYVNASDSNQ 229
            ISG+T  NG YE+ SM+  A+ C           C  R +L     ++  G         
Sbjct: 446  ISGITNSNGSYENTSMSESASGC-----------CKVRFSLFTLKMFVVMGVY------- 487

Query: 230  VPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAAT 289
            + C+I    S WS +MKGSPLTPSLTN+L+ TPASSLAEIEK+YE+A  GS+DEKI  A+
Sbjct: 488  LLCNI----SCWSLVMKGSPLTPSLTNSLITTPASSLAEIEKMYEVATTGSEDEKIAVAS 543

Query: 290  VLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCI 349
            +LCGASL RGWS+QE+ I+FI+ LLSPP PAD SGS SHLI  A  LN LLVGIS +DC+
Sbjct: 544  ILCGASLFRGWSIQEHVIIFIVTLLSPPAPADLSGSYSHLINSAPFLNVLLVGISPIDCV 603

Query: 350  QIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFH 409
             IFSLHG VPLLA ALMPICE FGS +PN +WTL +GE  S +AVFS AFT+L+RLWRF 
Sbjct: 604  HIFSLHGVVPLLAGALMPICEAFGSGVPNITWTLPTGELISSHAVFSTAFTLLLRLWRFD 663

Query: 410  KPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFM 469
             PPL+ +  D+P V  Q SPEYLLLVRN +L  FG SPKD+M  +RFSK I  S DPIFM
Sbjct: 664  HPPLDYVLGDVPPVGPQPSPEYLLLVRNCRLECFGKSPKDRMARRRFSKVIDISVDPIFM 723

Query: 470  DSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLTSATSGST 529
            DSFP+LK+WYRQ++EC+AS L+ L  G+ VH IVD+LL+ MF+K N+ G+   + +SGS+
Sbjct: 724  DSFPRLKQWYRQHQECMASILSELKTGSPVHHIVDSLLSMMFKKANKGGSQSLTPSSGSS 783

Query: 530  NSSGSGLEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPAT 589
            + S SG +D S +LK+PAWDILEA PFVLDAAL ACAHG LSPRELATGLK L+D LPAT
Sbjct: 784  SLSTSGGDDSSDQLKLPAWDILEAAPFVLDAALTACAHGSLSPRELATGLKILADFLPAT 843

Query: 590  LATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGN 649
            L T+VSYFS+EVTRGLWKP  MNGTDWPSPA NL+S+EQQI+KILAATGVDVP +   G 
Sbjct: 844  LGTMVSYFSSEVTRGLWKPVSMNGTDWPSPAANLASVEQQIEKILAATGVDVPRLPADGI 903

Query: 650  SPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVK 709
            S ATLPLPLAALVSLTIT+KLDKA++RFL LVG  L SLA++CPWPCMPIV SLW QKVK
Sbjct: 904  SAATLPLPLAALVSLTITYKLDKATERFLVLVGPALDSLAAACPWPCMPIVTSLWTQKVK 963

Query: 710  RWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLT-SSHNYSNGGVGALLGHGFGSHF 768
            RW+DFL+FSAS TVFH+N DAV+QLL+SCFT TLGLT +S   S GGVGALLGHGFGS +
Sbjct: 964  RWSDFLIFSASRTVFHHNRDAVIQLLRSCFTCTLGLTPTSQLCSYGGVGALLGHGFGSRY 1023

Query: 769  SGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHG 828
            SGGIS   PGILY++VHRS+RDVMF+ EEILS+LM  V+ IA+  LP  + EKLKKTK G
Sbjct: 1024 SGGISTAAPGILYIKVHRSIRDVMFLTEEILSLLMFSVKSIATRELPAGQAEKLKKTKDG 1083

Query: 829  MRY--GQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGG 886
             RY  GQVSL+ AM R KLAASLGASLVWISGG +LV +L+ ETLPSWFISVHG   E  
Sbjct: 1084 SRYGIGQVSLSLAMRRVKLAASLGASLVWISGGLNLVQALIKETLPSWFISVHG---EED 1140

Query: 887  ESGCMVGMLGGYALAYFAVFCATFAWGVDSESRASKKRPTVLGTHLEFLASALDRKISVG 946
            E G MV ML GYALAYFA+  + FAWGVDS   ASK+RP VL  HLEF+ SAL+ KIS+G
Sbjct: 1141 ELGGMVPMLRGYALAYFAILSSAFAWGVDSSYPASKRRPRVLWLHLEFMVSALEGKISLG 1200

Query: 947  CDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGA 1006
            CD ATW+AYV+GFV+L+V CTP W+LE++V+ +KRLSK LRQW+E++LAL LL  GG+G 
Sbjct: 1201 CDWATWQAYVTGFVSLMVQCTPAWVLEVDVEVIKRLSKSLRQWNEQDLALALLCAGGLGT 1260

Query: 1007 MGAAAQLIVES 1017
            MGAA +LIVE+
Sbjct: 1261 MGAATELIVET 1271

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Involved in the repression of phenylpropanoid biosynthesis. May compete with MED33B for common binding partners or for occupancy in Mediator.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9LUG9\|MD33A_ARATH Mediator of RNA polymerase II transcription subunit 33A OS=Arabidopsis thaliana GN=MED33A PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1019
296086711		1388	unnamed protein product [Vitis vinifera]	0.996	0.731	0.732	0.0
224068803		1295	predicted protein [Populus trichocarpa]	0.983	0.773	0.748	0.0
359479864		1321	PREDICTED: uncharacterized protein LOC10	0.980	0.756	0.722	0.0
224128668		1315	predicted protein [Populus trichocarpa]	0.986	0.764	0.729	0.0
225432512		1305	PREDICTED: uncharacterized protein LOC10	0.978	0.763	0.690	0.0
255551487		1325	conserved hypothetical protein [Ricinus	0.997	0.766	0.680	0.0
356513981		1303	PREDICTED: uncharacterized protein LOC10	0.995	0.778	0.685	0.0
449444909		1335	PREDICTED: mediator of RNA polymerase II	0.994	0.758	0.719	0.0
224100311		1304	predicted protein [Populus trichocarpa]	0.974	0.761	0.665	0.0
356557874		1310	PREDICTED: uncharacterized protein LOC10	0.994	0.773	0.655	0.0

>gi\|296086711\|emb\|CBI32346.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1513 bits (3918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 745/1017 (73%), Positives = 860/1017 (84%), Gaps = 2/1017 (0%)

Query: 1    MSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTF 60
            +S AGQC+G S SALWLPID+FLED MD +QV ATSAVE LTGLVKALQ VNGT+WH+TF
Sbjct: 371  ISSAGQCHGVSWSALWLPIDMFLEDTMDDSQVVATSAVETLTGLVKALQAVNGTSWHNTF 430

Query: 61   LGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEESELIDETEQSPS 120
            LG+WIAALRL+QRERDPSEGPVPR+D+ LCM+LS+T L + +IIEEEES LIDE  +SP+
Sbjct: 431  LGVWIAALRLVQRERDPSEGPVPRLDTCLCMLLSITPLAIVNIIEEEESTLIDEAGRSPT 490

Query: 121  NLPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGY 180
            NL K+KQ   + RKDL++SLQLLGD+E +LT P  +  +ANQA AKA+MF+SG+T G+GY
Sbjct: 491  NLRKEKQISVKHRKDLISSLQLLGDYEGLLTVPQSLSLVANQAVAKAMMFVSGVTSGSGY 550

Query: 181  YESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSG 240
             + +SMN L  +C GNMRHLIVEACIARNLLDTSAYLWPGYVN   SNQ+P S+   M G
Sbjct: 551  LDCMSMNDLPMNCSGNMRHLIVEACIARNLLDTSAYLWPGYVNGR-SNQLPRSVPGPMPG 609

Query: 241  WSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGW 300
            WSSLMKGSPLTP + N LV TPASSLAEIEK+YEIAVNGSDDEKI AA +LCGASLVRGW
Sbjct: 610  WSSLMKGSPLTPPMINVLVSTPASSLAEIEKIYEIAVNGSDDEKISAAAILCGASLVRGW 669

Query: 301  SVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPL 360
            ++QE+T+ FI KLLSPPVPADYSG++SHLIGYA  LN LLVGISSVDC+QI+SLHG VP 
Sbjct: 670  NIQEHTVFFITKLLSPPVPADYSGTDSHLIGYAPFLNVLLVGISSVDCVQIYSLHGLVPQ 729

Query: 361  LAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQ-LTVD 419
            LA ALMPICEVFGS  P  S TL++GEE S + VFSNAF +L+RLWRF+ PPLE  +  D
Sbjct: 730  LAGALMPICEVFGSCAPKVSCTLTTGEEISSHQVFSNAFNLLLRLWRFNHPPLEHVMGGD 789

Query: 420  MPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWY 479
            +P V SQL+PEYLLLVRNS+LA+ G + K   K +R S+    S +PIFMDSFPKLK WY
Sbjct: 790  IPPVGSQLTPEYLLLVRNSQLANSGNTTKGPFKYRRPSRISSPSPEPIFMDSFPKLKLWY 849

Query: 480  RQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLTSATSGSTNSSGSGLEDV 539
            RQ++ CIAS L+GLVHGT VH +VDA+L  MFRK+ R G PLT   SGS+NSSGSG ED 
Sbjct: 850  RQHQACIASALSGLVHGTPVHQVVDAVLNMMFRKMGRGGQPLTPTASGSSNSSGSGPEDA 909

Query: 540  SIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSA 599
            S++LK+PAWDILEA PFVLDAAL ACAHGRLSPRELATGLK+LSD LPA+LAT+ SYFSA
Sbjct: 910  SLRLKLPAWDILEAIPFVLDAALTACAHGRLSPRELATGLKDLSDFLPASLATIASYFSA 969

Query: 600  EVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLA 659
            EVTRG+WKPAFMNGTDWPSPA NLS +EQQIKK+LAATGVDVP++A  G+SPATLPLPLA
Sbjct: 970  EVTRGIWKPAFMNGTDWPSPAANLSMVEQQIKKVLAATGVDVPSLAAVGSSPATLPLPLA 1029

Query: 660  ALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSA 719
            ALVSLTIT+KLD+A++R L +VG  L+SLA+ CPWPCMPI+ASLWAQKVKRW D+L+FSA
Sbjct: 1030 ALVSLTITYKLDRATERLLTVVGPALNSLAAGCPWPCMPIIASLWAQKVKRWADYLIFSA 1089

Query: 720  SGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGI 779
            S TVFH+ +DAVVQLLKSCFTSTLGL SS   SNGGVGALLGHGFGSH+SGG+SPV PGI
Sbjct: 1090 SRTVFHHKSDAVVQLLKSCFTSTLGLNSSPVSSNGGVGALLGHGFGSHYSGGMSPVAPGI 1149

Query: 780  LYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHGMRYGQVSLAAA 839
            LYLRVHR VRDVMFM E +LS+LM  VRDIASCGLP+E+LEKLKKTK+GMRYGQVSLAAA
Sbjct: 1150 LYLRVHRDVRDVMFMTEVVLSLLMQSVRDIASCGLPKERLEKLKKTKYGMRYGQVSLAAA 1209

Query: 840  MTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYA 899
            MTR KLAASLGAS+VWISGG +LV SL+ ETLPSWFISVHG   EG ES  M  MLGGYA
Sbjct: 1210 MTRVKLAASLGASIVWISGGLTLVQSLIKETLPSWFISVHGSEHEGTESEEMAAMLGGYA 1269

Query: 900  LAYFAVFCATFAWGVDSESRASKKRPTVLGTHLEFLASALDRKISVGCDCATWRAYVSGF 959
            LAYFAV C TFAWGVD  S ASK+RP VLG HLEFLA+ALD KIS+GC   TWRAYV   
Sbjct: 1270 LAYFAVLCGTFAWGVDLMSPASKRRPKVLGAHLEFLANALDGKISLGCVWGTWRAYVPAL 1329

Query: 960  VTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVE 1016
            VTL+VGCTP W+ E++V+ LKR+SKGLRQW+EEELA+ LLG+GG+ AMGAAA++IVE
Sbjct: 1330 VTLMVGCTPAWIPEVDVEVLKRVSKGLRQWNEEELAIALLGLGGIHAMGAAAEVIVE 1386

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224068803\|ref\|XP_002302829.1\| predicted protein [Populus trichocarpa] gi\|222844555\|gb\|EEE82102.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359479864\|ref\|XP_002271735.2\| PREDICTED: uncharacterized protein LOC100254459 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224128668\|ref\|XP_002320389.1\| predicted protein [Populus trichocarpa] gi\|222861162\|gb\|EEE98704.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225432512\|ref\|XP_002277484.1\| PREDICTED: uncharacterized protein LOC100247741 [Vitis vinifera] gi\|297736973\|emb\|CBI26174.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255551487\|ref\|XP_002516789.1\| conserved hypothetical protein [Ricinus communis] gi\|223543877\|gb\|EEF45403.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356513981\|ref\|XP_003525686.1\| PREDICTED: uncharacterized protein LOC100783353 [Glycine max]	Back alignment and taxonomy information

>gi\|449444909\|ref\|XP_004140216.1\| PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224100311\|ref\|XP_002311827.1\| predicted protein [Populus trichocarpa] gi\|222851647\|gb\|EEE89194.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356557874\|ref\|XP_003547235.1\| PREDICTED: uncharacterized protein LOC100782680 [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1019
TAIR\|locus:2039356		1275	REF4 "AT2G48110" [Arabidopsis	0.738	0.590	0.612	8.6e-303
TAIR\|locus:2088050		1309	RFR1 "AT3G23590" [Arabidopsis	0.841	0.654	0.560	6.2e-259

TAIR\|locus:2039356 REF4 "AT2G48110" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2371 (839.7 bits), Expect = 8.6e-303, Sum P(3) = 8.6e-303
 Identities = 465/759 (61%), Positives = 552/759 (72%)

Query:   238 MSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLV 297
             +S WS +MKGSPLTPSLTN+L+ TPASSLAEIEK+YE+A  GS+DEKI  A++LCGASL 
Sbjct:   492 ISCWSLVMKGSPLTPSLTNSLITTPASSLAEIEKMYEVATTGSEDEKIAVASILCGASLF 551

Query:   298 RGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGW 357
             RGWS+QE+ I+FI+ LLSPP PAD SGS SHLI  A  LN LLVGIS +DC+ IFSLHG 
Sbjct:   552 RGWSIQEHVIIFIVTLLSPPAPADLSGSYSHLINSAPFLNVLLVGISPIDCVHIFSLHGV 611

Query:   358 VPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLT 417
             VPLLA ALMPICE FGS +PN +WTL +GE  S +AVFS AFT+L+RLWRF  PPL+ + 
Sbjct:   612 VPLLAGALMPICEAFGSGVPNITWTLPTGELISSHAVFSTAFTLLLRLWRFDHPPLDYVL 671

Query:   418 VDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDSFPKLKR 477
              D+P V  Q SPEYLLLVRN +L  FG SPKD+M  +RFSK I  S DPIFMDSFP+LK+
Sbjct:   672 GDVPPVGPQPSPEYLLLVRNCRLECFGKSPKDRMARRRFSKVIDISVDPIFMDSFPRLKQ 731

Query:   478 WYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLXXXXXXXXXXXXXXLE 537
             WYRQ++EC+AS L+ L  G+ VH IVD+LL+ MF+K N+ G+                 +
Sbjct:   732 WYRQHQECMASILSELKTGSPVHHIVDSLLSMMFKKANKGGSQSLTPSSGSSSLSTSGGD 791

Query:   538 DVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYF 597
             D S +LK+PAWDILEA PFVLDAAL ACAHG LSPRELATGLK L+D LPATL T+VSYF
Sbjct:   792 DSSDQLKLPAWDILEAAPFVLDAALTACAHGSLSPRELATGLKILADFLPATLGTMVSYF 851

Query:   598 SAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNXXXXXXXX 657
             S+EVTRGLWKP  MNGTDWPSPA NL+S+EQQI+KILAATGVDVP +   G         
Sbjct:   852 SSEVTRGLWKPVSMNGTDWPSPAANLASVEQQIEKILAATGVDVPRLPADGISAATLPLP 911

Query:   658 XXXXXXXXITFKLDKASDRFXXXXXXXXXXXXXXCPWPCMPIVASLWAQKVKRWNDFLVF 717
                     IT+KLDKA++RF              CPWPCMPIV SLW QKVKRW+DFL+F
Sbjct:   912 LAALVSLTITYKLDKATERFLVLVGPALDSLAAACPWPCMPIVTSLWTQKVKRWSDFLIF 971

Query:   718 SASGTVFHYNTDAVVQLLKSCFTSTLGLT-SSHNYSNXXXXXXXXXXXXXXXXXXISPVG 776
             SAS TVFH+N DAV+QLL+SCFT TLGLT +S   S                   IS   
Sbjct:   972 SASRTVFHHNRDAVIQLLRSCFTCTLGLTPTSQLCSYGGVGALLGHGFGSRYSGGISTAA 1031

Query:   777 PGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHGMRYG--QV 834
             PGILY++VHRS+RDVMF+ EEILS+LM  V+ IA+  LP  + EKLKKTK G RYG  QV
Sbjct:  1032 PGILYIKVHRSIRDVMFLTEEILSLLMFSVKSIATRELPAGQAEKLKKTKDGSRYGIGQV 1091

Query:   835 SXXXXXXXXXXXXXXGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGM 894
             S              GASLVWISGG +LV +L+ ETLPSWFISVHG   E  E G MV M
Sbjct:  1092 SLSLAMRRVKLAASLGASLVWISGGLNLVQALIKETLPSWFISVHG---EEDELGGMVPM 1148

Query:   895 LGGYALAYFAVFCATFAWGVDSESRASKKRPTVLGTHLEFLASALDRKISVGCDCATWRA 954
             L GYALAYFA+  + FAWGVDS   ASK+RP VL  HLEF+ SAL+ KIS+GCD ATW+A
Sbjct:  1149 LRGYALAYFAILSSAFAWGVDSSYPASKRRPRVLWLHLEFMVSALEGKISLGCDWATWQA 1208

Query:   955 YVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEE 993
             YV+GFV+L+V CTP W+LE++V+ +KRLSK LRQW+E++
Sbjct:  1209 YVTGFVSLMVQCTPAWVLEVDVEVIKRLSKSLRQWNEQD 1247

GO:0009698 "phenylpropanoid metabolic process" evidence=IMP

GO:0016020 "membrane" evidence=TAS

GO:2000762 "regulation of phenylpropanoid metabolic process" evidence=IGI

TAIR\|locus:2088050 RFR1 "AT3G23590" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4IN69	MD33B_ARATH	No assigned EC number	0.6401	0.9627	0.7694	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00023679001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (1323 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1019
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 59.1 bits (142), Expect = 7e-09
 Identities = 57/412 (13%), Positives = 110/412 (26%), Gaps = 134/412 (32%)

Query: 387 EEFSCY-------AVFSNA-FTILVRLWRFHKPPLEQL-------------TVDMPLVAS 425
           + F C        ++ S      ++      K  +                 V    V  
Sbjct: 31  DNFDCKDVQDMPKSILSKEEIDHIIMS----KDAVSGTLRLFWTLLSKQEEMVQK-FVEE 85

Query: 426 QLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWYRQNEEC 485
            L   Y  L+  S + +    P    +     ++  ++ + +F     K      Q    
Sbjct: 86  VLRINYKFLM--SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF----AKYNVSRLQPYLK 139

Query: 486 IASTLTGL-------VHGT-----SVHLIVDAL-----LTKMFRKINRSGTPLTSATSGS 528
           +   L  L       + G      +  + +D         KM  KI             +
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFKI-------FWLNLKN 191

Query: 529 TNSSGSGLEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPR----ELATGLKEL-- 582
            NS  + LE            +L+   + +D    + +    + +     +   L+ L  
Sbjct: 192 CNSPETVLE------------MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 583 ----SDCLPATLATVVSYFSAEVTRGLWKP----AFMNGTDWPSPATNLSSIEQQIKKIL 634
                +CL   L          V   +       AF           NLS       KIL
Sbjct: 240 SKPYENCL---L----------VLLNVQNAKAWNAF-----------NLSC------KIL 269

Query: 635 AATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASS-CP 693
             T     T  +   +   + L        ++T   D+     L  +      L      
Sbjct: 270 LTTRFKQVTDFLSAATTTHISL-----DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 694 WPCMPIVASLWAQKVK----RWNDFLVFSASGTVFHYNTDAVVQLLKSCFTS 741
               P   S+ A+ ++     W+++          H N D +  +++S    
Sbjct: 325 --TNPRRLSIIAESIRDGLATWDNWK---------HVNCDKLTTIIESSLNV 365

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00