Citrus Sinensis ID: 001739

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------102
MATPAAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYGDIQSDDEDPLPSAVRKVAGGRR
ccccccccccEEEEEEEEEccccEEEEEEcccccccccccEEEEEEEEccccccccccccccHHHHHHHHHHHHcccEEEEEEEEEEcccccEEEEEEEccccHHHHHHHcccEEEEEcccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHccccEEEEEEEEEccccEEEEEEccccEEEEEEEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHccccEEEEEEEEEcccccEEEEEEEccccccccHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEEEEEccEEEEEccccccccccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHHcccEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEccccccccccccHHHccccccccccccHHHHHHHcccEEEEEccccccccHHHHHHHHHHHHHHHccccccccccccccEEEcccccHHHHHccHHHHHHHcccccEEEEEEccccEEEEEcccccccEEEEcccEEcccccccccHHHHHHHHHHHccccEEEEEEEEcccccEEEEEEccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHcccccccccccccccEEEEEEcccccEEEEEEEEEccccccccccEEEEEEEEccccEEEccccccccccccccccccccccccccEEcccccccccHHHHHHHHHHHccccccEEEEEEEEcccccEEEccccccEEEEEEEcccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccc
cccccccccccEEEEEEEEEcccEEEEEccccccccccccEEEEEEEEccccccccccccccHHHHHHHHHHHHHccEEEEEEEEEccccccEEEEEEEccccHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHcHHHHHHHHccccccEEEEEEEcccEEEEEEccccEEEEEEEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccEEEEEEEccccccEEEEEEccccccHHHHHHHHHHccccEEEcccHHHcccHHHHHHHHHHHHHHHHHHccHcccccccccHHHHcccccEEEEEEEEcccEEEEEccccccccccccEEEEEcccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEEEEccccccccEEccccccccHHHHHHHHHHHHHccccccccccccEHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHccccccccccccccEEEcccccHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEccccEEEEEEEEcEEcccccccHHHHHHHHHHHHHHcccEEEEEEEccccccEEEEEEEcccHHHHHHHHHcccEEcccccccccccHHHHHHHHHHHHHHHHccHccccccHHHccHHHHHHcccccEEEEEEEEccccEEEEEEccccHHHHHHHHHHHHHHcccccccccccccccEEEEEEcccccEEEEEEEEccccccccccccEEEEEEEcccccEccHHHcccccccHccccHHHHHEEEEEEEcccccHHHHHHHHHHHHHHHccccHHHHHHHHHccccccEEcccccccEEEEccccccccccHHHHHHHcccEEEcccccccHHHHHHHHHHHHHHHHHHHHHccccEEEccccccccccccccccccccccc
matpaaagggwyrarvkavpsgdSLVITAlsnpnpgpprektltlssiitprlarrggldepfawDSREFLRKLCIGKVtfrvdyavpnigrefgtvilgDKNVAMLVVSEGWAKVkeqgsqkgeasPFLAELLRLEEQAKLQGlgrwskvpgaaeasirnlppsaigdssnfNAMALLdankgrpmqgiveqardgstlrvyllpefQFVQVFVAGIqapavarrpaaivdtdteetngdvsaaeavAPLNSAQRLAASTasagqqstdepfalDAKYFTEMRVLNREVRIVLEGVDKFKNLIgsvfypdgetAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRmwtnyvppqsnskaihdqnftgKVVEVVSGdciivaddsipygNALAERRVNlssircpkignprkdekpAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVeaapvaagakgpagtkgpagtkgqaaakgpageesvgatetriIDFGSifllspikgegddasavaqsnaagqpagVNVAELVVSRglgnvinhrdfeerSNYYDALLAAEARAKAgkkgcysskeppvmhiqdltmapvkkardflpflqrsrriPAVVEYVLSGhrfkvlipketcsiafsfsgvrcpgrnerySNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQtsfgsdripdshLLEQAEKSAKSQKLKIWENYvegeevsngaavegkQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLnlqeapvigafnpkkGEIVLAQFSadnswnramivnaprekvesvnDKFEVFYIDygnqelvpynklrpidpslsstpplaqlcslayikipaledeygpEAAEFLnehtynssNEFRALVEErdssggklkgqgtgTLLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGmwqygdiqsddedplpsaVRKVAGGRR
matpaaagggwyrARVKAVPSGDSLVITAlsnpnpgpprekTLTLSSIItprlarrggldepfawdsREFLRKLCIGKVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVkeqgsqkgeASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAAStasagqqstdepFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVppqsnskaihdqNFTGKVVEVVSGDCIIVADDSIPYGNALAErrvnlssircpkignprkdekpaaYAREAREFLrtrligrqvnvqmeySRKVVVEAApvaagakgpagtkgpagtKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLpflqrsrriPAVVEYVLSGHRFKVLIPKETCSIAfsfsgvrcpgrnERYSNEALLLMRQKILQRDVEIEVETVDRTGtflgslwesrTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEevsngaavegkqkeVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVnaprekvesvnDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTlmvqeglarverrkrwgsrdRQAALENLEKFQEEAKTARIGMWQygdiqsddedplpsavrkvaggrr
MATPAAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGiqapavarrpaaivDTDTEETNGDVSAAEAVAPLNSAQRLaastasagqqstDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEaapvaagakgpagtkgpagtkgqaaakgpagEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDallaaearakagkkgCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSggklkgqgtgtllHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYGDIQSDDEDPLPSAVRKVAGGRR
*********GWYRARVKAVP**DSLVIT****************LSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKV*************LAELLRL*****LQGLGRW*****************************************IVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIV*****************************************FALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANM*****************KTRLRMWTNYVP******AIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCP****************EAREFLRTRLIGRQVNVQMEYSRKVVVEAA************************************ETRIIDFGSIFLLSPIK******************AGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAK****GCY******VMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSF**********************LKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDP****TPPLAQLCSLAYIKIPALEDEYGPEAAEFLNE**************************GTGTLLHVTLVAVDAEISINTLMVQEGLARVER*************************ARIGMWQYG**********************
*************ARVKAVPSGDSLVITALS*****PPREKTLTLSSII*************FAWDSREFLRKLCIGKVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQ***********AELLRLEE***LQ***RWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVA********************AEAVAPLNSAQRL*************EPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNY*****************KVVEVVSGDCIIVADDSIPYGNALAERRVNLS*******************AREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIF***********************PAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAA******************VMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQT***********************KLKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQEGLARV********************************WQYGDIQSDDED**************
**********WYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAK**********ASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSA***************DEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNP********YAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVA*******************************ATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEA**********SSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQ*********LKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYGDIQSDDEDPLPSAVRKVAGGRR
*********GWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRW******AEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAV*********************************************TDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSP********SAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYGDIQS******************
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MATPAAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYGDIQSDDEDPLPSAVRKVAGGRR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1019 2.2.26 [Sep-21-2011]
Q78PY7910 Staphylococcal nuclease d yes no 0.828 0.927 0.340 1e-130
Q66X93909 Staphylococcal nuclease d yes no 0.828 0.928 0.340 1e-130
Q863B3910 Staphylococcal nuclease d yes no 0.829 0.928 0.338 1e-129
Q7KZF4910 Staphylococcal nuclease d yes no 0.829 0.928 0.337 1e-129
Q5REU4910 Staphylococcal nuclease d yes no 0.829 0.928 0.338 1e-129
Q7ZT42897 Staphylococcal nuclease d yes no 0.821 0.933 0.332 1e-122
Q9Y7U7878 Staphylococcal nuclease d yes no 0.426 0.495 0.313 1e-49
Q9BXT4 1180 Tudor domain-containing p no no 0.140 0.121 0.329 2e-13
Q99MV1 1172 Tudor domain-containing p no no 0.126 0.110 0.301 5e-12
Q58EK5 1175 Tudor domain-containing p no no 0.170 0.148 0.313 1e-09
>sp|Q78PY7|SND1_MOUSE Staphylococcal nuclease domain-containing protein 1 OS=Mus musculus GN=Snd1 PE=1 SV=1 Back     alignment and function desciption
 Score =  466 bits (1198), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 352/1033 (34%), Positives = 528/1033 (51%), Gaps = 189/1033 (18%)

Query: 13   RARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGL---------DEPF 63
            R  VK V SG ++++     P  GPP E+ + LS+I    LARR            DEP+
Sbjct: 21   RGIVKMVLSGCAIIVRG--QPRGGPPPERQINLSNIRAGNLARRAAATQPDGKDTPDEPW 78

Query: 64   AWDSREFLRKLCIGK-VTFRVDYAVPNIGREFGTVILGD----KNVAMLVVSEGWAKVKE 118
            A+ +REFLRK  IGK V F ++   P  GRE+G + LG     +N+A  +V+EG A  +E
Sbjct: 79   AFPAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYLGKDTNGENIAESLVAEGLATRRE 137

Query: 119  QGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMAL 178
             G +    +P    L   EEQAK    G WS+  G    +IR+L    I +  +F     
Sbjct: 138  -GMRAN--NPEQNRLSECEEQAKASKKGMWSE--GNGSHTIRDLK-YTIENPRHF----- 186

Query: 179  LDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEET 238
            +D++  +P+  I+E  RDGS +R  LLP    V V ++GI+ P   R           ET
Sbjct: 187  VDSHHQKPVNAIIEHVRDGSVVRALLLPGHHLVTVMLSGIKCPTFRR-----------ET 235

Query: 239  NGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVD 298
            +G                            T EPFA +AK+FTE R+L R+V+I+LE   
Sbjct: 236  DGS--------------------------ETPEPFAAEAKFFTESRLLQRDVQIILESCH 269

Query: 299  KFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRL 358
              +NL+G++ +P+G    ++   L++ G A+ ++WS  +    A++ L+AA+  AK+ RL
Sbjct: 270  N-QNLLGTILHPNG----NITELLLKEGFARCVDWSIAVYTRGAEK-LRAAERFAKERRL 323

Query: 359  RMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCP 418
            R+W +YVPP +N     D+ F  KV++V++ D I+V  +S  Y      + ++LSSIR P
Sbjct: 324  RIWRDYVPPTANLDQ-KDKQFVAKVMQVLNADAIVVKLNSGDY------KTIHLSSIRPP 376

Query: 419  K-----IGNPRKDEKP---AAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGA 470
            +     I +  K  +P     Y  EAREFLR +LIG++VNV ++Y R     A+P     
Sbjct: 377  RLEGDNIQDKNKKLRPLYDIPYMFEAREFLRKKLIGKKVNVTVDYIRP----ASP----- 427

Query: 471  KGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSN 530
                           A    PA  E   AT T                            
Sbjct: 428  ---------------ATETVPAFSERTCATVT---------------------------- 444

Query: 531  AAGQPAGVNVAELVVSRGLGNVINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPP 589
                  G+N+AE +VS+GL  VI +R D ++RS++YD LLAAEARA    KG +S KE P
Sbjct: 445  ----IGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVP 500

Query: 590  VMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVR 649
            +  + D++    +KA+ FLPFLQR+ R  AVVEYV SG R K+ +PKETC I F  +G+ 
Sbjct: 501  IHRVADIS-GDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIE 559

Query: 650  CP--GRN--------ERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVA 699
            CP   RN        E +S EA L  ++ +LQR+VE+EVE++D+ G F+G L     N++
Sbjct: 560  CPRGARNLPGLVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHMDGANLS 619

Query: 700  VILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEG--EEVSNGAAVEG 757
            V+L+E  L+K+   F ++R      L  AE++AK +K K+W +Y E   EEV      + 
Sbjct: 620  VLLVEQALSKVH--FTAERSAYYKPLLSAEEAAKQRKEKVWAHYEERPVEEVMPVLEEKE 677

Query: 758  KQKEVLKVVVTEILGGGKFYVQQV--GDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIV 815
            +      V VTEI     FYVQ V  G Q +  + + + +      PV G++ P++GE  
Sbjct: 678  RSASYKPVFVTEITDDLHFYVQDVETGTQ-LEKLMENMRNDISSHPPVEGSYAPRRGEFC 736

Query: 816  LAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSS--T 873
            +A+F  D  W RA +     EKVES   K  VFYIDYGN+E++P  +L  + P+ S+   
Sbjct: 737  IAKF-VDGEWYRARV-----EKVES-PAKVHVFYIDYGNREILPSTRLGTLPPAFSTRVL 789

Query: 874  PPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQG-T 932
            P  A   + A+I++P  ED                 ++   ++V +  ++   L  +  +
Sbjct: 790  PAQATEYAFAFIQVPQDEDA---------------RTDAVDSVVRDIQNTQCLLNVEHLS 834

Query: 933  GTLLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIG 992
             +  HVTL   D++  +   +V+EGL  VE RK    +  Q  +      QE AK+AR+ 
Sbjct: 835  ASCPHVTLQFADSKGDVGLGLVKEGLVMVEVRK---EKQFQKVITEYLNAQESAKSARLN 891

Query: 993  MWQYGDIQSDDED 1005
            +W+YGD ++DD D
Sbjct: 892  LWRYGDFRADDAD 904
Functions as a bridging factor between STAT6 and the basal transcription factor. Plays a role in PIM1 regulation of MYB activity. Plays a role in cell viability (By similarity). Functions as a transcriptional coactivator for STAT5.
Mus musculus (taxid: 10090)
>sp|Q66X93|SND1_RAT Staphylococcal nuclease domain-containing protein 1 OS=Rattus norvegicus GN=Snd1 PE=2 SV=1 Back     alignment and function description
>sp|Q863B3|SND1_BOVIN Staphylococcal nuclease domain-containing protein 1 OS=Bos taurus GN=SND1 PE=1 SV=1 Back     alignment and function description
>sp|Q7KZF4|SND1_HUMAN Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens GN=SND1 PE=1 SV=1 Back     alignment and function description
>sp|Q5REU4|SND1_PONAB Staphylococcal nuclease domain-containing protein 1 OS=Pongo abelii GN=SND1 PE=2 SV=1 Back     alignment and function description
>sp|Q7ZT42|SND1_DANRE Staphylococcal nuclease domain-containing protein 1 OS=Danio rerio GN=snd1 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y7U7|SND1_SCHPO Staphylococcal nuclease domain-containing protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snd1 PE=1 SV=1 Back     alignment and function description
>sp|Q9BXT4|TDRD1_HUMAN Tudor domain-containing protein 1 OS=Homo sapiens GN=TDRD1 PE=2 SV=2 Back     alignment and function description
>sp|Q99MV1|TDRD1_MOUSE Tudor domain-containing protein 1 OS=Mus musculus GN=Tdrd1 PE=1 SV=2 Back     alignment and function description
>sp|Q58EK5|TDRD1_DANRE Tudor domain-containing protein 1 OS=Danio rerio GN=tdrd1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1019
356516458990 PREDICTED: staphylococcal nuclease domai 0.966 0.994 0.738 0.0
356508886990 PREDICTED: staphylococcal nuclease domai 0.966 0.994 0.737 0.0
449440482988 PREDICTED: staphylococcal nuclease domai 0.961 0.991 0.730 0.0
307135996988 short-chain dehydrogenase/reductase [Cuc 0.961 0.991 0.727 0.0
224136368984 predicted protein [Populus trichocarpa] 0.959 0.993 0.738 0.0
2254477231000 PREDICTED: staphylococcal nuclease domai 0.964 0.983 0.731 0.0
255539999988 ebna2 binding protein P100, putative [Ri 0.964 0.994 0.731 0.0
356527378995 PREDICTED: staphylococcal nuclease domai 0.967 0.990 0.725 0.0
356512924991 PREDICTED: staphylococcal nuclease domai 0.966 0.993 0.722 0.0
357464897992 nuclease domain-containing protein [Medi 0.965 0.991 0.718 0.0
>gi|356516458|ref|XP_003526911.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] Back     alignment and taxonomy information
 Score = 1541 bits (3989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 756/1024 (73%), Positives = 865/1024 (84%), Gaps = 39/1024 (3%)

Query: 1    MATPAAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLD 60
            MA+ A+   GWYR RVKAVPSGD LVI A+S+  PGP  EKT+TLSS+I PRLARRGG+D
Sbjct: 1    MASAASGATGWYRGRVKAVPSGDCLVIVAISSTKPGPLPEKTITLSSLIAPRLARRGGVD 60

Query: 61   EPFAWDSREFLRKLCIGK-VTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQ 119
            EPFAW+SREFLRKLCIGK VTFRVDY VP+I R+FGTV LGDKNVAMLVVS+GW KV+EQ
Sbjct: 61   EPFAWESREFLRKLCIGKEVTFRVDYNVPSISRDFGTVFLGDKNVAMLVVSQGWVKVREQ 120

Query: 120  GSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALL 179
            G QKGEASP+LAELLRLEEQAK +GLGRWSKVPGAAEASIRNLPPSA+GD SNF+AM  L
Sbjct: 121  GQQKGEASPYLAELLRLEEQAKQEGLGRWSKVPGAAEASIRNLPPSALGDPSNFDAMTFL 180

Query: 180  DANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARR--PAAIVDTD--T 235
            +ANKG PM+ +VEQ RDGSTLR+YLLPEFQFVQVFVAGIQAP + RR  P ++V+ +  +
Sbjct: 181  NANKGLPMEAVVEQVRDGSTLRIYLLPEFQFVQVFVAGIQAPQMGRRAAPESVVEPELVS 240

Query: 236  EETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLE 295
            ++TNGDV   E  APL SAQRLA ST++   ++  +PFA DAK+FTEMRVLNR+VR+VLE
Sbjct: 241  DDTNGDV-PGEPQAPLTSAQRLAVSTSA---ETAADPFAHDAKFFTEMRVLNRDVRLVLE 296

Query: 296  GVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKK 355
            GVDKF NLIGSV+YPDGE+AKDLA+ELVENG AKY+EWSANMMEE+AKR+LK A+LQAKK
Sbjct: 297  GVDKFSNLIGSVYYPDGESAKDLALELVENGYAKYVEWSANMMEEEAKRKLKTAELQAKK 356

Query: 356  TRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSI 415
             RLRMWTNYVPP SNSKAIH+QNF+GKVVEVVSGDCI+VADDSIPYG+ LAERRVNLSSI
Sbjct: 357  DRLRMWTNYVPPPSNSKAIHNQNFSGKVVEVVSGDCIVVADDSIPYGSPLAERRVNLSSI 416

Query: 416  RCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAG 475
            RCPK+GNPR+DEKPA YAREA+EFLRTRLIGRQVNVQMEYSRKV      V   A     
Sbjct: 417  RCPKMGNPRRDEKPAPYAREAKEFLRTRLIGRQVNVQMEYSRKVSPTDGSVVPSA----- 471

Query: 476  TKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQP 535
                                   A+++R++DFGS+FLLS  K + DDA + A   A  Q 
Sbjct: 472  -----------------------ASDSRVMDFGSVFLLSGAKVDNDDAPSSAPP-AGSQQ 507

Query: 536  AGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQD 595
             GVNVAEL+V RG G VI HRDFEERSNYYDALLAAE+RA +G+KG +S+K+PPVMHI D
Sbjct: 508  NGVNVAELIVGRGFGTVIRHRDFEERSNYYDALLAAESRAISGRKGTHSAKDPPVMHITD 567

Query: 596  LTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNE 655
            LT A  KKARDFLPFL RSRR+PAVVEYVLSGHRFK+LIPKETCSIAFSFSGVRCPGR E
Sbjct: 568  LTTASAKKARDFLPFLHRSRRVPAVVEYVLSGHRFKLLIPKETCSIAFSFSGVRCPGRAE 627

Query: 656  RYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFG 715
             YS+EA+ LMR+KI+QRDVEIEVETVDRTGTFLGSLWESRTNVA+ LLEAGLAKLQTSFG
Sbjct: 628  PYSDEAIALMRRKIMQRDVEIEVETVDRTGTFLGSLWESRTNVAITLLEAGLAKLQTSFG 687

Query: 716  SDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNGAAVEGKQKEVLKVVVTEILGGGK 775
            SDRIPD HLL+QAE+SAK QKLKIWEN+VEGEEVSNGAAVE KQ+EVLKV+VTE+LGGGK
Sbjct: 688  SDRIPDFHLLDQAEQSAKRQKLKIWENFVEGEEVSNGAAVENKQQEVLKVIVTEVLGGGK 747

Query: 776  FYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPR 835
            FYVQ VGDQK+AS+QQQLASLNL++APV+GAFNPKKG+IVL  F AD SW RAM+VN PR
Sbjct: 748  FYVQTVGDQKIASIQQQLASLNLKDAPVLGAFNPKKGDIVLCYFHADKSWYRAMVVNTPR 807

Query: 836  EKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYG 895
              VES ND FEVFY+DYGNQE+VPY++LRP+DPS+S+ P LAQLCSLAYIKIP LE+++G
Sbjct: 808  GPVESPNDLFEVFYVDYGNQEVVPYSQLRPVDPSVSAAPGLAQLCSLAYIKIPNLEEDFG 867

Query: 896  PEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQ 955
             EAAE+L+E T NS  EFRA VEE+D+SGGK+KGQGTG +L VTLVAVDAEIS+N  M+Q
Sbjct: 868  QEAAEYLSELTLNSGKEFRAKVEEKDTSGGKVKGQGTGAILAVTLVAVDAEISVNAAMLQ 927

Query: 956  EGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYGDIQSDDEDPLPSAVRKVA 1015
            EGLAR E+R RW  +DRQ AL+NLE FQ+EAKT+R GMWQYGDIQSDDED  P   RK  
Sbjct: 928  EGLARTEKRNRWDRKDRQTALDNLENFQDEAKTSRRGMWQYGDIQSDDEDTAPPP-RKTG 986

Query: 1016 GGRR 1019
            GGR+
Sbjct: 987  GGRK 990

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356508886|ref|XP_003523184.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|449440482|ref|XP_004138013.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Cucumis sativus] gi|449522262|ref|XP_004168146.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|307135996|gb|ADN33852.1| short-chain dehydrogenase/reductase [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|224136368|ref|XP_002322312.1| predicted protein [Populus trichocarpa] gi|222869308|gb|EEF06439.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225447723|ref|XP_002273150.1| PREDICTED: staphylococcal nuclease domain-containing protein 1 [Vitis vinifera] gi|296088151|emb|CBI35621.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255539999|ref|XP_002511064.1| ebna2 binding protein P100, putative [Ricinus communis] gi|223550179|gb|EEF51666.1| ebna2 binding protein P100, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356527378|ref|XP_003532288.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356512924|ref|XP_003525164.1| PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357464897|ref|XP_003602730.1| nuclease domain-containing protein [Medicago truncatula] gi|355491778|gb|AES72981.1| nuclease domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1019
TAIR|locus:2159218985 Tudor2 "TUDOR-SN protein 2" [A 0.499 0.516 0.636 0.0
ZFIN|ZDB-GENE-030131-3124913 snd1 "staphylococcal nuclease 0.433 0.484 0.356 8.1e-121
RGD|631340909 Snd1 "staphylococcal nuclease 0.432 0.485 0.362 3e-118
UNIPROTKB|Q66X93909 Snd1 "Staphylococcal nuclease 0.432 0.485 0.362 3e-118
MGI|MGI:1929266910 Snd1 "staphylococcal nuclease 0.432 0.484 0.358 2.9e-117
UNIPROTKB|Q7KZF4910 SND1 "Staphylococcal nuclease 0.432 0.484 0.353 4.9e-117
UNIPROTKB|Q863B3910 SND1 "Staphylococcal nuclease 0.456 0.510 0.344 1.1e-116
UNIPROTKB|E2RH91910 SND1 "Uncharacterized protein" 0.432 0.484 0.355 1.3e-115
FB|FBgn0035121926 Tudor-SN "Tudor-SN" [Drosophil 0.436 0.480 0.290 3.2e-93
ASPGD|ASPL0000052132882 AN0242 [Emericella nidulans (t 0.434 0.502 0.336 4.2e-92
TAIR|locus:2159218 Tudor2 "TUDOR-SN protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1704 (604.9 bits), Expect = 0., Sum P(2) = 0.
 Identities = 333/523 (63%), Positives = 412/523 (78%)

Query:   498 GATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRD 557
             GA + R++DFGS+FL SP KG+    +AVA   AA  P G N+AEL++SRGLG V+ HRD
Sbjct:   474 GAGD-RVMDFGSVFLPSPTKGD----TAVA---AAATP-GANIAELIISRGLGTVVRHRD 524

Query:   558 FEERSNYYDXXXXXXXXXXXXXXXCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRI 617
             FEERSN+YD                +S+K+ P +HI DLT+A  KKA+DFLP LQR  +I
Sbjct:   525 FEERSNHYDALLAAEARAIAGKKNIHSAKDSPALHIADLTVASAKKAKDFLPSLQRINQI 584

Query:   618 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 677
              AVVEYVLSGHRFK+ IPKE+CSIAF+FSGVRCPGR E YS EA+ LMR+KI+QRDVEI 
Sbjct:   585 SAVVEYVLSGHRFKLYIPKESCSIAFAFSGVRCPGRGEPYSEEAIALMRRKIMQRDVEIV 644

Query:   678 VETVDRTGTFLGSLWE--SRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQ 735
             VE VDRTGTFLGS+WE  S+TN    LLEAGLAK+QT FG+DRIP++H+LE AE+SAK+Q
Sbjct:   645 VENVDRTGTFLGSMWEKNSKTNAGTYLLEAGLAKMQTGFGADRIPEAHILEMAERSAKNQ 704

Query:   736 KLKIWENYVEGEEVSNGAA-VEGKQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLA 794
             KLKIWENYVEGEEV NG++ VE +QKE LKVVVTE+LGGG+FYVQ VGDQKVAS+Q QLA
Sbjct:   705 KLKIWENYVEGEEVVNGSSKVETRQKETLKVVVTEVLGGGRFYVQTVGDQKVASIQNQLA 764

Query:   795 SLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGN 854
             +L+L++AP+IG+FNPKKG+IVLAQFS DNSWNRAMIVN PR  V+S  ++FEVFYIDYGN
Sbjct:   765 ALSLKDAPIIGSFNPKKGDIVLAQFSLDNSWNRAMIVNGPRGAVQSPEEEFEVFYIDYGN 824

Query:   855 QELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFR 914
             QE+VPY+ +RP+DPS+SS P LAQLC LAYIK+P  E+++G +A E+L+  T  S  EFR
Sbjct:   825 QEIVPYSAIRPVDPSVSSAPGLAQLCRLAYIKVPGKEEDFGRDAGEYLHTVTLESGKEFR 884

Query:   915 ALVEERDSSXXXXXXXXXXXXXHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQA 974
             A+VEERD+S              VTL+AVD EIS+N  M+QEG+AR+E+R+RW  +D+QA
Sbjct:   885 AVVEERDTSGGKVKGQGTGTELVVTLIAVDDEISVNAAMLQEGIARMEKRRRWEPKDKQA 944

Query:   975 ALENLEKFQEEAKTARIGMWQYGDIQSDDEDPLPSAVRKVAGG 1017
             AL+ LEKFQ+EA+ +R G+W+YGDIQSDDED +P  VRK   G
Sbjct:   945 ALDALEKFQDEARKSRTGIWEYGDIQSDDEDNVP--VRKPGRG 985
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0004518 "nuclease activity" evidence=ISS
GO:0016442 "RNA-induced silencing complex" evidence=IEA
GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA
GO:0031047 "gene silencing by RNA" evidence=IEA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0009686 "gibberellin biosynthetic process" evidence=IMP
GO:0009845 "seed germination" evidence=IMP
GO:0003723 "RNA binding" evidence=TAS
GO:0005635 "nuclear envelope" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009306 "protein secretion" evidence=IGI
GO:0009651 "response to salt stress" evidence=IGI;RCA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
ZFIN|ZDB-GENE-030131-3124 snd1 "staphylococcal nuclease domain containing 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|631340 Snd1 "staphylococcal nuclease and tudor domain containing 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q66X93 Snd1 "Staphylococcal nuclease domain-containing protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1929266 Snd1 "staphylococcal nuclease and tudor domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q7KZF4 SND1 "Staphylococcal nuclease domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q863B3 SND1 "Staphylococcal nuclease domain-containing protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RH91 SND1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0035121 Tudor-SN "Tudor-SN" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ASPGD|ASPL0000052132 AN0242 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q78PY7SND1_MOUSENo assigned EC number0.34070.82820.9274yesno
Q7KZF4SND1_HUMANNo assigned EC number0.33720.82920.9285yesno
Q66X93SND1_RATNo assigned EC number0.34070.82820.9284yesno
Q7ZT42SND1_DANRENo assigned EC number0.33230.82130.9331yesno
Q5REU4SND1_PONABNo assigned EC number0.33810.82920.9285yesno
Q863B3SND1_BOVINNo assigned EC number0.33810.82920.9285yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_XV0342
hypothetical protein (984 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1019
pfam00567118 pfam00567, TUDOR, Tudor domain 6e-33
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 4e-23
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 5e-22
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 8e-22
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 4e-21
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 2e-20
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 1e-19
pfam00565106 pfam00565, SNase, Staphylococcal nuclease homologu 3e-14
pfam00565106 pfam00565, SNase, Staphylococcal nuclease homologu 6e-14
cd0450848 cd04508, TUDOR, Tudor domains are found in many eu 1e-13
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 9e-12
smart0033357 smart00333, TUDOR, Tudor domain 6e-11
pfam00565106 pfam00565, SNase, Staphylococcal nuclease homologu 8e-11
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 1e-10
COG1525192 COG1525, COG1525, Micrococcal nuclease (thermonucl 1e-08
pfam00565106 pfam00565, SNase, Staphylococcal nuclease homologu 1e-06
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 3e-06
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 2e-05
cd00175129 cd00175, SNc, Staphylococcal nuclease homologues 6e-05
smart00318137 smart00318, SNc, Staphylococcal nuclease homologue 2e-04
COG1525192 COG1525, COG1525, Micrococcal nuclease (thermonucl 7e-04
pfam00565106 pfam00565, SNase, Staphylococcal nuclease homologu 0.001
>gnl|CDD|215998 pfam00567, TUDOR, Tudor domain Back     alignment and domain information 
 Score =  123 bits (310), Expect = 6e-33
 Identities = 48/126 (38%), Positives = 66/126 (52%), Gaps = 9/126 (7%)

Query: 760 KEVLKVVVTEILGGGKFYVQQVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQ 818
              + VVVT I   G+FY+Q   D +K+  + ++L    L + P   +  PK G+  +A 
Sbjct: 1   GSTIDVVVTHIESPGRFYIQPKSDDKKLEKLTEELQEYYLSKPPE--SLPPKVGDGCVAA 58

Query: 819 FSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQ 878
           FS D  W RA I+      V   +   EVF+IDYGN E VP + LRP+    +S PP A 
Sbjct: 59  FSEDGKWYRAKIL------VSLDDGLVEVFFIDYGNTETVPLSDLRPLPSEFASLPPQAI 112

Query: 879 LCSLAY 884
            CSLA 
Sbjct: 113 KCSLAG 118

Length = 118
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue Back     alignment and domain information
>gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue Back     alignment and domain information
>gnl|CDD|119391 cd04508, TUDOR, Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains Back     alignment and domain information
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|197660 smart00333, TUDOR, Tudor domain Back     alignment and domain information
>gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|224442 COG1525, COG1525, Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|238102 cd00175, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|214615 smart00318, SNc, Staphylococcal nuclease homologues Back     alignment and domain information
>gnl|CDD|224442 COG1525, COG1525, Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|201310 pfam00565, SNase, Staphylococcal nuclease homologue Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1019
KOG2039875 consensus Transcriptional coactivator p100 [Transc 100.0
smart00318138 SNc Staphylococcal nuclease homologues. 99.9
smart00318138 SNc Staphylococcal nuclease homologues. 99.9
PRK06518177 hypothetical protein; Provisional 99.89
KOG2039 875 consensus Transcriptional coactivator p100 [Transc 99.89
cd00175129 SNc Staphylococcal nuclease homologues. SNase homo 99.89
cd00175129 SNc Staphylococcal nuclease homologues. SNase homo 99.88
PF00567121 TUDOR: Tudor domain; InterPro: IPR008191 There are 99.83
COG1525192 Micrococcal nuclease (thermonuclease) homologs [DN 99.78
PF00565108 SNase: Staphylococcal nuclease homologue; InterPro 99.77
PRK06518177 hypothetical protein; Provisional 99.76
PF00565108 SNase: Staphylococcal nuclease homologue; InterPro 99.73
COG1525192 Micrococcal nuclease (thermonuclease) homologs [DN 99.65
smart0033357 TUDOR Tudor domain. Domain of unknown function pre 99.27
cd0450848 TUDOR Tudor domains are found in many eukaryotic o 99.25
KOG2279608 consensus Kinase anchor protein AKAP149, contains 98.94
smart0074361 Agenet Tudor-like domain present in plant sequence 98.43
PF06003264 SMN: Survival motor neuron protein (SMN); InterPro 98.06
KOG2279608 consensus Kinase anchor protein AKAP149, contains 96.56
PF0946555 LBR_tudor: Lamin-B receptor of TUDOR domain; Inter 96.16
PF0564168 Agenet: Agenet domain; InterPro: IPR008395 This do 94.46
PF1171755 Tudor-knot: RNA binding activity-knot of a chromod 91.73
KOG4327218 consensus mRNA splicing protein SMN (survival moto 91.36
PF15057124 DUF4537: Domain of unknown function (DUF4537) 90.09
PF15057124 DUF4537: Domain of unknown function (DUF4537) 89.34
KOG3026262 consensus Splicing factor SPF30 [RNA processing an 88.78
KOG3038264 consensus Histone acetyltransferase SAGA associate 83.6
>KOG2039 consensus Transcriptional coactivator p100 [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=4.7e-89  Score=839.12  Aligned_cols=852  Identities=44%  Similarity=0.708  Sum_probs=733.3

Q ss_pred             CcEEEEEeEeccCCeEEEeeCCCCCCCCCCceEEEEEeccCCCCCCCCC-CCChhHHHHHHHHHHHcCce-EEEEEeeee
Q 001739           10 GWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGG-LDEPFAWDSREFLRKLCIGK-VTFRVDYAV   87 (1019)
Q Consensus        10 ~~~~g~V~~V~sGDTi~v~~~~~~~~g~~~~~~vrL~~IdaPe~~~~~~-~~ep~a~eAre~Lr~~liGk-V~~~~~~~~   87 (1019)
                      ....|.|++|.|||.+.+++.  +..+++++.+++|+++.+|++.++++ -++||+|++++|+|++++|| +.|..++..
T Consensus         3 ~~~~~~v~~v~s~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~p~~~~~~~~~~~~~~~k~~~v~~~~~~   80 (875)
T KOG2039|consen    3 QRLVGYVKAVLSGDAFVIRGS--PRAGPPPEFQINLSNVKAPNEARRDKGVDEPFAWESREFLRKSEIGKEVAVTRDQMS   80 (875)
T ss_pred             eEEeeeEEEEeccCccEEEcc--cccCCCCCceEEEeecCCccccccCCCCCCCcChhhHHHHHHHhccceeeeEEeeec
Confidence            356799999999999999985  45689999999999999999998852 37999999999999999999 999988844


Q ss_pred             CCCCcEEEEEEeCCcchHHHHHhcCCEEEEEecCcCCCCchHHHHHHHHHHHHHHhCCCCCCCCCCCcccccccCCCCCC
Q 001739           88 PNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAI  167 (1019)
Q Consensus        88 ~~~gR~~g~v~~~g~~v~~~lv~~G~A~~~~~~~~~~~~~~~~~~l~~ae~~Ak~~~~GiWs~~~~~~~~~~~~~~~~~~  167 (1019)
                      ..++|.+|.+++++.++++.|+.+||+.+++...   .+.++...+...|.+|++.++|+|+.    .....+++.++. 
T Consensus        81 ~~~~~e~~~~~~~~~~~a~~lv~~g~~~~~~~~~---~~~~~~~~l~~~~~~~k~~~~g~w~~----~~~~~~~~~~~~-  152 (875)
T KOG2039|consen   81 ANNGREVGFIYLGDENSAESLVKEGLLDVRDEGV---RNSSYFKTLDEVEVQAKQSGRGIWSK----LDHFIRNLKDSA-  152 (875)
T ss_pred             cccccccceeecCcchhHHHHHhccCCccccccc---ccchhhhhhhhhhhhhhhhccccccc----cccceeeccccc-
Confidence            4579999999999999999999999999988763   33778889999999999999999993    334568888763 


Q ss_pred             CCCchhhHHHHhhhcCCCCccEEEEEEccCC-EEEEEEcCCceEEEEEEeeecCCCCCCCCCccccCcccccCCCccccc
Q 001739          168 GDSSNFNAMALLDANKGRPMQGIVEQARDGS-TLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAE  246 (1019)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~Ve~V~dG~-t~rv~~~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~~~~~~~~  246 (1019)
                           .+++.|+..+.++++.|+||+|++|+ +.||++.+++..++++|+|+.||.+..+.           ++.     
T Consensus       153 -----~~p~~~~~~~~~~~~~~~ve~v~~~~~~~rv~~~p~~~~~~v~lSg~~~P~~~~~s-----------~~~-----  211 (875)
T KOG2039|consen  153 -----LNPAELVDAVGGKPVNAIVEHVRDGEDTVRVLLRPELKYVTVRLSGKRCPSQGPPS-----------DGS-----  211 (875)
T ss_pred             -----cccHHHHHhcCCceeeeehhhccChhhhhhHHhccccceeEEecccccCCCCCCCC-----------CCC-----
Confidence                 57789999988999999999999999 68888888888899999999999986532           110     


Q ss_pred             cccchhhHHHHhhhcccCCCCCCCchhHHHHHHHHHHHccCCEEEEEEeeecCCCCEEEEEEeCCCCChhHHHHHHHhcC
Q 001739          247 AVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENG  326 (1019)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~epf~~eAk~f~~~~ll~r~V~i~~~~~d~~g~~~~~V~~~~g~~~~di~~~Ll~~G  326 (1019)
                                          ....+||+.+|+.|++.++++|+|.|.+++...+..++|+|++++|+    |++.|+.+|
T Consensus       212 --------------------~~~~~~~~~~a~~f~~~~~~~r~~~i~~~~~~~~~~~~g~v~~~~~~----i~~~~~~~~  267 (875)
T KOG2039|consen  212 --------------------PSVPDPFADEAKLFSEDRLLQRAVAIPLESEENYVFFVGDVLYPDGN----IALELLSEG  267 (875)
T ss_pred             --------------------CCCCCcHHHHHHHhcccchhhhceeeeeccccccccccccccccccc----eeeehhccc
Confidence                                12358999999999999999999999999998887789999999994    999999999


Q ss_pred             cEEEEecccccchHHHHHHHHHHHHHHHHhcccc-ccCCCCCCCCcccccccceeEEEEEEeeCcEEEEecCCCCCCCCc
Q 001739          327 LAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRM-WTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNAL  405 (1019)
Q Consensus       327 la~~~~~~~~~~~~~~~~~l~~ae~~Ak~~r~g~-W~~~~~~~~~~~~~~~~~~~~~V~~v~~gd~i~v~~~~~~~~~~~  405 (1019)
                      ++++++|+...++.+....++.++..++..+.++ |++|.++.+.++.+.++.|.+.|++++++||+.+..++   |+  
T Consensus       268 ~~k~v~~s~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~~~v~e~~~~d~~~~~~~s---g~--  342 (875)
T KOG2039|consen  268 LAKCVDWSKNEIPCGAAKKLRAAERLAKEHRLRVLWKNYQVPLSTSESIDDKGFSGKVVEVLVSDCVLVALDS---GS--  342 (875)
T ss_pred             hHHHHHhhhhccCchhhhhhhHHhhccchhHHHHHHhccccccchheeeccccccceeeeeeccCceEEecCC---CC--
Confidence            9999999999888888778999999999999999 99999999888877788999999999999999999876   33  


Q ss_pred             ceeEEEEeeccCCCCCCCCCCCC--CcchHHHHHHHHHhhcCCcEEEEEEEEEeeccccccccccCCCCCCCCCCCCCCc
Q 001739          406 AERRVNLSSIRCPKIGNPRKDEK--PAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTK  483 (1019)
Q Consensus       406 ~e~~v~l~~i~~p~~~~~~~~~~--~~~~~~ea~e~lr~~~iGk~v~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (1019)
                       +.++.+++|+.|+.+++.+..+  ..||+++|++|||+++||++|.+.++|.++...                .     
T Consensus       343 -~~~~~~~~i~~pr~~~~~~~~~p~~~~~q~~a~~~~~~~~i~~~v~~~~~~~~~~~~----------------~-----  400 (875)
T KOG2039|consen  343 -ENKLFLSSIRLPRAGEPGRSLKPYISPVQLVAREFLRKKLIGKRVILQMDVIRPRRE----------------N-----  400 (875)
T ss_pred             -ceEEEeeeccCccccccccccCCccccHHHHhhhhhhhhccCceeeEeeeccccccc----------------c-----
Confidence             7899999999999444333334  489999999999999999999999999886310                0     


Q ss_pred             CccccCCCCCCCccCccccceeeeeEEEecCCCCCCCCCchhhhccccCCCCCCcchHHHHHHccceEEEecC-Cccccc
Q 001739          484 GQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHR-DFEERS  562 (1019)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~lv~~G~a~v~~~~-~~~~~~  562 (1019)
                                      +.   ..-+.+++                      .+|.|+++.++.+|++++.+|| .+..++
T Consensus       401 ----------------~~---~~~c~~~~----------------------~~~~~~a~~~~~kg~~~~v~~~~~~~~~s  439 (875)
T KOG2039|consen  401 ----------------VP---TKVCALPL----------------------GGGKNVAELLVKKGLATVVRKRQDDEQRS  439 (875)
T ss_pred             ----------------cc---cccccccC----------------------CCcceeeEEEecccchhhhhhHhhhhhhc
Confidence                            00   01111222                      2468999999999999999999 667889


Q ss_pred             hHHHHHHHHHHHHHhcCCCCCCCCCCCcceeEeCCCcchhchh-ccccccccCCccCEEEEEEecCCEEEEEecCCcceE
Q 001739          563 NYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKAR-DFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSI  641 (1019)
Q Consensus       563 ~~~~~l~~~e~~A~~~~~G~~~~~~~~~~~~~d~~~~~~~~~k-~fl~~l~r~~~l~~vVe~V~~G~~~rv~lp~~~~~i  641 (1019)
                      +.||.|+.+|..|..+++|+|+.+..+.+.+.+++. ...+.+ .|+++++++..+..+|+++++|+++++++|++.+.+
T Consensus       440 ~~~d~ll~~E~~~~~~~~~~~s~~~~~~~~~~~~~~-~i~~n~~~~~~~~~~~~~~~~~v~~~~~gs~~~~~~pk~~~~~  518 (875)
T KOG2039|consen  440 SHYDLLLVAEAIAIKGKKGCHSKKLDPTLRITDLTV-DIVRNKVQFLPSLDRGNRVEAIVEAVISGSRLRLYIPKETCYC  518 (875)
T ss_pred             chhhhhhcchHHHHhhhhhhcccCCCcceeechhhh-hhhcCcEEeehhhccccceeeeeeeeeccccceeccCCcceeE
Confidence            999999999999999999999987776677888864 333444 899999999999999999999999999999999999


Q ss_pred             EEEEecccCCC-------CCCcChHHHHHHHHHHhcCceEEEEEEEECCCCcEEEEEEeC-CccHHHHHHHcCCEEEeee
Q 001739          642 AFSFSGVRCPG-------RNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWES-RTNVAVILLEAGLAKLQTS  713 (1019)
Q Consensus       642 ~~~LaGI~~P~-------~~e~w~~EA~~flk~~ll~R~V~v~V~~~Dk~G~~~g~L~~~-~~nIa~~Ll~~GlA~v~~~  713 (1019)
                      +|.++|++||+       .+++|+.+|..|++.+++++++.+.+..+++.|++++.++.+ +.+++..++++||+.++  
T Consensus       519 ~~~~~g~~~~~~~r~~~~~~e~~~~~~~~~~~~~vl~~~~~l~v~~~~~~~~~l~~~~~~~~~~~s~~~~e~~L~~~~--  596 (875)
T KOG2039|consen  519 QFALAGIDCPSGARNDVQEGEPFSEEAIEFTRSLVLQREVELEVEITDKNGNFLGSLYEDSKTNLSLKLLEQGLAPEH--  596 (875)
T ss_pred             EEeeccccCcccccccccccCCccHHHHHHhhhheeccceEEEEeeeccCccccccccccccccchhhhhhhhcCccc--
Confidence            99999999996       488999999999999999999999999999999999999887 88999999999999996  


Q ss_pred             cCCCCCCchhHHHHHHHHHH-hhccccccccccccccc--CCCcccCCCccEEEEEEEEEecCCeEEEEEcCc-hhHHHH
Q 001739          714 FGSDRIPDSHLLEQAEKSAK-SQKLKIWENYVEGEEVS--NGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGD-QKVASV  789 (1019)
Q Consensus       714 ~s~~~~~~~~~L~~AE~~AK-~~k~glW~~~~p~~~~~--~~~~~~~~~~~~~~V~VT~V~sp~~FyvQ~~~~-~~l~~L  789 (1019)
                      |..+++.....|..++..|| ..+.++|.++.++..+.  ....+......+..++++.+..++.||+|..+. ..+++|
T Consensus       597 ~~~e~~~~~~~~~s~~~~ak~~~k~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~i~p~~~F~~q~~~~~~~i~~~  676 (875)
T KOG2039|consen  597 FAAERSSEYPPLESAELPAKLEQKLKIWLNYVEPVVEEVVLCLEKDERDLNTLKVVVTEITPGKGFYVQSISDGSKITKI  676 (875)
T ss_pred             hhhhhhhhccchhhhhhccccchhcceeecccccchhhheecccccccccccceeeEeeecCCCcceeecccchHHHHHH
Confidence            76666666677888999999 89999999988763221  111111123456677777777669999999984 789999


Q ss_pred             HHHHHHHHccCCCCCCCCCCcCCCeEEEEEcCCCcEEEEEEEeecccccccCCCEEEEEEEecCCceeecCCCcccCCcc
Q 001739          790 QQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPS  869 (1019)
Q Consensus       790 ~~~L~~~~~~~~~~~~~~~p~~G~lc~A~fs~D~~WYRA~V~~i~~~~~~~~~~~v~V~fVDYGn~e~V~~~~Lr~Lp~~  869 (1019)
                      +..|+.......+..+++.|+.|++|+|+|+.|++||||.|+.+.      +...+.|+||||||.+++|+.+|++||+.
T Consensus       677 ~~~~~~~~~~~~~~~~~~~p~~gd~c~A~y~~D~qwyRa~i~~V~------~~~~~~V~yiDygn~E~lp~~~l~~lp~~  750 (875)
T KOG2039|consen  677 MTNLSQLVELKPPSSGSYTPKRGDLCVAKYSLDGQWYRALIVEVL------DPESMEVFYIDYGNIETLPFVRLKPLPPH  750 (875)
T ss_pred             HHHHHHHhhhcccccCCCCCCCCCeeeeeeccccceeeeeeeeec------cCcceeEEEEecCcccccccccccCCChH
Confidence            999999888767777889999999999999999999999999984      22899999999999999999999999999


Q ss_pred             ccCCCCceEEEEecceecCCCCCCCcHHHHHHHhhccccCCCEEEEEEEEEeCCCCcccCCCCcceEEEEEEecCCCCcH
Q 001739          870 LSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISI  949 (1019)
Q Consensus       870 f~~lP~qAi~C~LagV~p~~~~~~Ws~eA~~~f~~lllv~~k~l~a~V~~~~~~g~~i~~~~~~~~~~V~L~d~~~~~sI  949 (1019)
                      |..+|++|.+|+|++|+++. ..+..++++.+|.+  ...++.+++.+.....          ++.++++|+...+..++
T Consensus       751 ~~~~p~~a~~~~L~~ik~~~-~~~~~e~~i~~l~~--~~~~~~~~~~~~~~i~----------~~~~~~~l~~~~~~~d~  817 (875)
T KOG2039|consen  751 FSLLPPVAQECGLAGIKEPQ-LEDLKEEAIRYLDE--DTLGHKCQVNVELRVV----------GNSLLVTLLYTVEELDV  817 (875)
T ss_pred             HhcCchHHhhhhhhcccCCc-ccchHHHHHHHHHH--Hhhcccceeeeeeeee----------ccceeEEEeeecCcCCh
Confidence            99999999999999999985 57889999999999  6677777776443321          45688999888789999


Q ss_pred             HHHHHH-cCCeeeecccccCchhhHHHHHHHHHHHHHHHHhccCccccCCCCCCCCCCCc
Q 001739          950 NTLMVQ-EGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYGDIQSDDEDPLP 1008 (1019)
Q Consensus       950 n~~LV~-~GlA~~~~~~~~~~~~~~~~~~~l~~aq~~Ak~~r~giW~yGD~~~Dde~~~~ 1008 (1019)
                      ++.|+. .|+.....++.  .+.++...+.|+.+|+.|++.|+++|.|||++.+|+++++
T Consensus       818 ~~~l~~~~~l~~~~~~~~--~~~~q~~~~~~~~~qq~a~~~~~~~~~y~~~~~~~~~~~~  875 (875)
T KOG2039|consen  818 GEELVAVEGLSLVEQRKT--EEVLQALLDQLEKAQQEARKEHLNIWFYGDVTGKDADEVV  875 (875)
T ss_pred             hHhhhhhccccccccccc--chHHHHHhhHhhhchhhHHhhhhhhhhhcCcccCcccccC
Confidence            999999 99999887662  2667999999999999999999999999999999998863

>smart00318 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>smart00318 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>PRK06518 hypothetical protein; Provisional Back     alignment and domain information
>KOG2039 consensus Transcriptional coactivator p100 [Transcription] Back     alignment and domain information
>cd00175 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>cd00175 SNc Staphylococcal nuclease homologues Back     alignment and domain information
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins [] Back     alignment and domain information
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes Back     alignment and domain information
>PRK06518 hypothetical protein; Provisional Back     alignment and domain information
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes Back     alignment and domain information
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair] Back     alignment and domain information
>smart00333 TUDOR Tudor domain Back     alignment and domain information
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains Back     alignment and domain information
>KOG2279 consensus Kinase anchor protein AKAP149, contains KH and Tudor RNA-binding domains [Signal transduction mechanisms] Back     alignment and domain information
>smart00743 Agenet Tudor-like domain present in plant sequences Back     alignment and domain information
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins Back     alignment and domain information
>KOG2279 consensus Kinase anchor protein AKAP149, contains KH and Tudor RNA-binding domains [Signal transduction mechanisms] Back     alignment and domain information
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane Back     alignment and domain information
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO [] Back     alignment and domain information
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F Back     alignment and domain information
>KOG4327 consensus mRNA splicing protein SMN (survival motor neuron) [RNA processing and modification] Back     alignment and domain information
>PF15057 DUF4537: Domain of unknown function (DUF4537) Back     alignment and domain information
>PF15057 DUF4537: Domain of unknown function (DUF4537) Back     alignment and domain information
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification] Back     alignment and domain information
>KOG3038 consensus Histone acetyltransferase SAGA associated factor SGF29 [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1019
3bdl_A570 Crystal Structure Of A Truncated Human Tudor-Sn Len 2e-59
3omg_A261 Structure Of Human Snd1 Extended Tudor Domain In Co 8e-24
2hqx_A246 Crystal Structure Of Human P100 Tudor Domain Conser 1e-21
2wac_A218 Extended Tudor Domain Of Drosophila Melanogaster Tu 2e-21
2o4x_A217 Crystal Structure Of Human P100 Tudor Domain Length 4e-18
2e6n_A104 Solution Structure Of The Tudor Domain Of Staphyloc 5e-09
2o4x_B91 Crystal Structure Of Human P100 Tudor Domain Length 9e-09
4b9w_A201 Structure Of Extended Tudor Domain Td3 From Mouse T 6e-06
4b9x_A226 Structure Of Extended Tudor Domain Td3 From Mouse T 8e-06
4j1m_A143 Crystal Structure Of Staphylococcal Nuclease Varian 4e-04
4iun_A143 Crystal Structure Of Staphylococcal Nuclease Varian 4e-04
3hej_A143 Crystal Structure Of Staphylococcal Nuclease Varian 6e-04
3mhb_A143 Crystal Structure Of Staphylococcal Nuclease Varian 6e-04
>pdb|3BDL|A Chain A, Crystal Structure Of A Truncated Human Tudor-Sn Length = 570 Back     alignment and structure 
Iteration: 1

 Score =  227 bits (579), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 164/470 (34%), Positives = 248/470 (52%), Gaps = 45/470 (9%)
Query: 537 GVNVAELVVSRGLGNVINHR-DFEERSNYYDXXXXXXXXXXXXXXXCYSSKEPPVMHIQD 595
           G+N+AE +VS+GL  VI +R D ++RS++YD                +S KE P+  + D
Sbjct: 129 GINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVAD 188
Query: 596 LTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCP--GR 653
           ++    +KA+ FLPFLQR+ R  AVVEYV SG R K+ +PKETC I F  +G+ CP   R
Sbjct: 189 IS-GDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGAR 247
Query: 654 N--------ERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEA 705
           N        E +S EA L  ++ +LQR+VE+EVE++D+ G F+G L     N++V+L+E 
Sbjct: 248 NLPGLVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHIDGANLSVLLVEH 307
Query: 706 GLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEG--EEVSNGAAVEGKQKEVL 763
            L+K+   F ++R      L  AE++AK +K K+W +Y E   EEV      + +     
Sbjct: 308 ALSKVH--FTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVLEEKERSASYK 365
Query: 764 KVVVTEILGGGKFYVQQV--GDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSA 821
            V VTEI     FYVQ V  G Q +  + + + +      PV G++ P++GE  +A+F  
Sbjct: 366 PVFVTEITDDLHFYVQDVETGTQ-LEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKF-V 423
Query: 822 DNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSS--TPPLAQL 879
           D  W RA +     EKVES   K  VFYIDYGN+E++P  +L  + P+ S+   P  A  
Sbjct: 424 DGEWYRARV-----EKVES-PAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATE 477
Query: 880 CSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSXXXXXXXXXXXXXHVT 939
            + A+I++P  +D+   +A + +     N+       VE   +              HVT
Sbjct: 478 YAFAFIQVPQ-DDDARTDAVDSVVRDIQNTQCLLN--VEHLSAG-----------CPHVT 523
Query: 940 LVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTA 989
           L   D++  +   +V+EGL  VE RK    +  Q  +      QE AK+A
Sbjct: 524 LQFADSKGDVGLGLVKEGLVMVEVRK---EKQFQKVITEYLNAQESAKSA 570
>pdb|3OMG|A Chain A, Structure Of Human Snd1 Extended Tudor Domain In Complex With The Symmetrically Dimethylated Arginine Piwil1 Peptide R14me2s Length = 261 Back     alignment and structure
>pdb|2HQX|A Chain A, Crystal Structure Of Human P100 Tudor Domain Conserved Region Length = 246 Back     alignment and structure
>pdb|2WAC|A Chain A, Extended Tudor Domain Of Drosophila Melanogaster Tudor-Sn ( P100) Length = 218 Back     alignment and structure
>pdb|2O4X|A Chain A, Crystal Structure Of Human P100 Tudor Domain Length = 217 Back     alignment and structure
>pdb|2E6N|A Chain A, Solution Structure Of The Tudor Domain Of Staphylococcal Nuclease Domain-Containing Protein 1 Length = 104 Back     alignment and structure
>pdb|2O4X|B Chain B, Crystal Structure Of Human P100 Tudor Domain Length = 91 Back     alignment and structure
>pdb|4B9W|A Chain A, Structure Of Extended Tudor Domain Td3 From Mouse Tdrd1 In Complex With Mili Peptide Containing Dimethylarginine 45. Length = 201 Back     alignment and structure
>pdb|4B9X|A Chain A, Structure Of Extended Tudor Domain Td3 From Mouse Tdrd1 Length = 226 Back     alignment and structure
>pdb|4J1M|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Delta+phs R105e At Cryogenic Temperature Length = 143 Back     alignment and structure
>pdb|4IUN|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Delta+phs R126e At Cryogenic Temperature Length = 143 Back     alignment and structure
>pdb|3HEJ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Delta+p Cryogenic Temperature Length = 143 Back     alignment and structure
>pdb|3MHB|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Delta+phs L38a At Cryogenic Temperature Length = 143 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1019
3bdl_A570 Staphylococcal nuclease domain-containing protein 1e-123
3bdl_A570 Staphylococcal nuclease domain-containing protein 5e-40
3bdl_A570 Staphylococcal nuclease domain-containing protein 4e-18
3bdl_A570 Staphylococcal nuclease domain-containing protein 3e-09
3bdl_A 570 Staphylococcal nuclease domain-containing protein 2e-04
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 8e-59
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 4e-07
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 4e-04
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 2e-53
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 2e-07
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 5e-07
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 6e-05
3ntk_A169 Maternal protein tudor; tudor domain, OB-fold, GER 1e-35
2diq_A110 Tudor and KH domain-containing protein; tudor doma 2e-21
3fdr_A94 Tudor and KH domain-containing protein; TDRD2, str 1e-20
3pnw_C77 Tudor domain-containing protein 3; FAB, structural 6e-19
2d9t_A78 Tudor domain-containing protein 3; structural geno 1e-18
3s6w_A54 Tudor domain-containing protein 3; methylated argi 1e-17
4a4f_A64 SurviVal of motor neuron-related-splicing factor; 3e-15
1mhn_A59 SurviVal motor neuron protein; SMN, SMA, spinal mu 6e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1g5v_A88 SurviVal motor neuron protein 1; mRNA processing, 7e-12
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 2e-09
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 2e-08
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 5e-07
4eqp_A143 Thermonuclease; staphylococcal nuclease, hyperstab 9e-06
2eqk_A85 Tudor domain-containing protein 4; structural geno 8e-08
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
 Score =  386 bits (992), Expect = e-123
 Identities = 203/653 (31%), Positives = 310/653 (47%), Gaps = 117/653 (17%)

Query: 361 WTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKI 420
            +  VP  S+     D+ F  KV++V++ D I+V  +S         + ++LSSIR P++
Sbjct: 11  SSGLVPRGSHM----DKQFVAKVMQVLNADAIVVKLNSGD------YKTIHLSSIRPPRL 60

Query: 421 GNPRKDEKPA--------AYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKG 472
                 +K           Y  EAREFLR +LIG++VNV ++Y R               
Sbjct: 61  EGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGKKVNVTVDYIRPA------------- 107

Query: 473 PAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAA 532
                                 E+V A   R     ++ +                    
Sbjct: 108 ------------------SPATETVPAFSER--TCATVTI-------------------- 127

Query: 533 GQPAGVNVAELVVSRGLGNVINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVM 591
               G+N+AE +VS+GL  VI +R D ++RS++YD LLAAEARA    KG +S KE P+ 
Sbjct: 128 ---GGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIH 184

Query: 592 HIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCP 651
            + D      +KA+ FLPFLQR+ R  AVVEYV SG R K+ +PKETC I F  +G+ CP
Sbjct: 185 RVAD-ISGDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECP 243

Query: 652 ----------GRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVI 701
                        E +S EA L  ++ +LQR+VE+EVE++D+ G F+G L     N++V+
Sbjct: 244 RGARNLPGLVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHIDGANLSVL 303

Query: 702 LLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENY--VEGEEVSNGAAVEGKQ 759
           L+E  L+K+   F ++R      L  AE++AK +K K+W +Y     EEV      + + 
Sbjct: 304 LVEHALSKVH--FTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVLEEKERS 361

Query: 760 KEVLKVVVTEILGGGKFYVQQVGDQ-KVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQ 818
                V VTEI     FYVQ V    ++  + + + +      PV G++ P++GE  +A+
Sbjct: 362 ASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAK 421

Query: 819 FSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSST--PPL 876
           F  D  W RA +             K  VFYIDYGN+E++P  +L  + P+ S+   P  
Sbjct: 422 FV-DGEWYRARVEKVES------PAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQ 474

Query: 877 AQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLL 936
           A   + A+I++P  +D+   +A + +     N+  +    VE                  
Sbjct: 475 ATEYAFAFIQVPQ-DDDARTDAVDSVVRDIQNT--QCLLNVEHLS-----------AGCP 520

Query: 937 HVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTA 989
           HVTL   D++  +   +V+EGL  VE RK    +  Q  +      QE AK+A
Sbjct: 521 HVTLQFADSKGDVGLGLVKEGLVMVEVRK---EKQFQKVITEYLNAQESAKSA 570
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570 Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Length = 246 Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Length = 246 Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Length = 246 Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Length = 218 Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Length = 218 Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Length = 218 Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Length = 218 Back     alignment and structure
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* Length = 169 Back     alignment and structure
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1 Length = 110 Back     alignment and structure
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} Length = 94 Back     alignment and structure
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens} Length = 77 Back     alignment and structure
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1 Length = 78 Back     alignment and structure
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A* Length = 54 Back     alignment and structure
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A* Length = 64 Back     alignment and structure
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A* Length = 59 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1 Length = 88 Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Length = 143 Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Length = 143 Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Length = 143 Back     alignment and structure
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ... Length = 143 Back     alignment and structure
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1019
d2diqa197 b.34.9.1 (A:8-104) Tudor and KH domain-containing 1e-20
d2hqxa190 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human ( 2e-18
d2d9ta160 b.34.9.1 (A:8-67) Tudor domain-containing protein 6e-17
d1mhna_59 b.34.9.1 (A:) Survival motor neuron protein 1, smn 7e-14
d1snoa_136 b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ 5e-12
d1snoa_136 b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ 8e-10
d1snoa_136 b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ 4e-05
d1snoa_136 b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ 0.002
d1snoa_136 b.40.1.1 (A:) Staphylococcal nuclease {Staphylococ 0.004
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Length = 97 Back     information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor and KH domain-containing protein TDRKH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.3 bits (211), Expect = 1e-20
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 806 AFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRP 865
                 G+IV A    + SW RA ++          N   +++++D+G+    P   LR 
Sbjct: 23  DLTVHVGDIVAAPLPTNGSWYRARVLGTLE------NGNLDLYFVDFGDNGDCPLKDLRA 76

Query: 866 IDPSLSSTPPLAQLCSLAYI 885
           +     S P  A  CSLA I
Sbjct: 77  LRSDFLSLPFQAIECSLARI 96
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 60 Back     information, alignment and structure
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Length = 59 Back     information, alignment and structure
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 Back     information, alignment and structure
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 Back     information, alignment and structure
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 Back     information, alignment and structure
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 Back     information, alignment and structure
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Length = 136 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1019
d1snoa_136 Staphylococcal nuclease {Staphylococcus aureus [Ta 99.96
d1snoa_136 Staphylococcal nuclease {Staphylococcus aureus [Ta 99.93
d2diqa197 Tudor and KH domain-containing protein TDRKH {Huma 99.88
d2hqxa190 P100 co-activator, SND1 {Human (Homo sapiens) [Tax 99.84
d1mhna_59 Survival motor neuron protein 1, smn {Human (Homo 99.52
d2d9ta160 Tudor domain-containing protein 3, TDRD3 {Mouse (M 99.52
d1wgsa_133 Probable histone acetyltransferase MYST1 {Mouse (M 94.46
d2buda188 Putative histone acetyltransferase MOF {Fruit fly 93.1
d2qqra256 Jumonji domain-containing protein 2A {Human (Homo 90.62
d2qqra159 Jumonji domain-containing protein 2A {Human (Homo 84.37
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Staphylococcal nuclease
family: Staphylococcal nuclease
domain: Staphylococcal nuclease
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.96  E-value=4.8e-29  Score=191.08  Aligned_cols=128  Identities=23%  Similarity=0.236  Sum_probs=110.6

Q ss_pred             EEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CE-EEEEEEEE--E
Q ss_conf             88999696469867995089999999971399997105899898899998449999999997738-61-99999234--0
Q 001739           12 YRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCI-GK-VTFRVDYA--V   87 (1019)
Q Consensus        12 ~~g~V~~V~sGDTi~i~~~~~~~~g~~~~~~vrL~~IdaP~~~~~~~~~ep~a~eAre~Lr~~l~-Gk-V~~~~~~~--~   87 (1019)
                      ..++|++|+|||||+|....       ...+|||+||||||+.++....+|||++|++||++++. |+ |.+.++..  .
T Consensus         5 ~~a~V~~V~DGDT~~v~~~~-------~~~~vRL~GIdaPE~~~~~~~~~~~g~eA~~~l~~ll~~~~~v~~~~~~~~~~   77 (136)
T d1snoa_           5 EPATLIKAIDGDTVKLMYKG-------QPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQRT   77 (136)
T ss_dssp             EEEEEEEECSSSEEEEEETT-------EEEEEEETTEECCCSSBTTTBSCTTHHHHHHHHHHHHHTCSCEEEEECSSCSB
T ss_pred             CCEEEEEEECCCEEEEEECC-------CEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf             25299999719999998699-------68899998773665466786233558999999999851684169999556457


Q ss_pred             CCCCCEEEEEEECCCCHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             79991899999599026889976487899980676799915799999999999991899778
Q 001739           88 PNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWS  149 (1019)
Q Consensus        88 ~~~gR~~g~v~~~g~~i~~~lv~~GlA~~~~~~~~~~~~~~~~~~l~~ae~~Ak~~~~GlW~  149 (1019)
                      +.|||.+|+||++|.|||++||++|||+++..+.   .+..+.+.|..+|.+|+++++||||
T Consensus        78 D~~gR~la~v~~~g~~l~~~Lv~~G~A~~~~~~~---~~~~~~~~l~~ae~~Ak~~~~GlWs  136 (136)
T d1snoa_          78 DKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYK---PNNTHEQLLRKSEAQAKKEKLNIWS  136 (136)
T ss_dssp             CTTSCEEEEEEETTEEHHHHHHHTTSCEECCCBT---TBCTTHHHHHHHHHHHHHTTCGGGC
T ss_pred             CCCCCCEEEEEEECCHHHHHHHHCCCEEEEEECC---CCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             7644312688874333589998789879803528---8826799999999999981888899
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2buda1 b.34.13.3 (A:367-454) Putative histone acetyltransferase MOF {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2qqra2 b.34.9.1 (A:956-1011) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qqra1 b.34.9.1 (A:897-955) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure