Citrus Sinensis ID: 001780
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1014 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LVN7 | 1095 | DNA polymerase delta cata | yes | no | 0.996 | 0.922 | 0.744 | 0.0 | |
| Q9LRE6 | 1105 | DNA polymerase delta cata | yes | no | 0.606 | 0.556 | 0.909 | 0.0 | |
| O48901 | 1088 | DNA polymerase delta cata | yes | no | 0.548 | 0.511 | 0.886 | 0.0 | |
| P30316 | 1086 | DNA polymerase delta cata | yes | no | 0.602 | 0.562 | 0.648 | 0.0 | |
| P52431 | 1105 | DNA polymerase delta cata | yes | no | 0.603 | 0.553 | 0.635 | 0.0 | |
| P28340 | 1107 | DNA polymerase delta cata | yes | no | 0.603 | 0.552 | 0.632 | 0.0 | |
| O54747 | 1103 | DNA polymerase delta cata | yes | no | 0.603 | 0.554 | 0.634 | 0.0 | |
| P97283 | 1103 | DNA polymerase delta cata | N/A | no | 0.603 | 0.554 | 0.632 | 0.0 | |
| P28339 | 1106 | DNA polymerase delta cata | yes | no | 0.603 | 0.553 | 0.629 | 0.0 | |
| P46588 | 1038 | DNA polymerase delta cata | N/A | no | 0.601 | 0.587 | 0.627 | 0.0 |
| >sp|Q9LVN7|DPOD1_ARATH DNA polymerase delta catalytic subunit OS=Arabidopsis thaliana GN=POLD1 PE=2 SV=2 | Back alignment and function desciption |
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Score = 1623 bits (4204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 818/1099 (74%), Positives = 903/1099 (82%), Gaps = 89/1099 (8%)
Query: 1 MNRSNGSARKRPPPTPKESWPNKQQATTPTTP-----VIDDEFL-DEDVFLDETLL--PE 52
MNRS G ++KRPPP+ K +AT +TP +DDEF+ +EDVFLDETLL E
Sbjct: 1 MNRS-GISKKRPPPSNTPPPAGKHRATGDSTPSPAIGTLDDEFMMEEDVFLDETLLYGDE 59
Query: 53 DEESLILRDIEQRQDFASRLAKWARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNRELLPL 112
DEESLILRDIE+R+ SR + WARPPLS Y+S QSI+FQQL+ID +I +S++ELLP
Sbjct: 60 DEESLILRDIEERE---SRSSAWARPPLSPAYLSNSQSIIFQQLEIDSIIAESHKELLPG 116
Query: 113 SSGSAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANR 172
SSG A IIR+FGVTREG+SVCC VHGFEPYFYI+CP GMGPDDIS+FHQ LEGRMRE+N+
Sbjct: 117 SSGQAPIIRMFGVTREGNSVCCFVHGFEPYFYIACPPGMGPDDISNFHQSLEGRMRESNK 176
Query: 173 NSKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMK 232
N+KVP+FV+ IEMVQKRSIMYYQQQKSQ FLKI VALPTMVASCRGILDRG+Q+DGLGMK
Sbjct: 177 NAKVPKFVKRIEMVQKRSIMYYQQQKSQTFLKITVALPTMVASCRGILDRGLQIDGLGMK 236
Query: 233 SFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHP 292
SF TYESN+LF LRFM+DC+IVGGNWIEVP GKY+K A+TLSYCQLEF CLYSD+IS
Sbjct: 237 SFQTYESNILFVLRFMVDCDIVGGNWIEVPTGKYKKNARTLSYCQLEFHCLYSDLISHAA 296
Query: 293 EGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQ--------------VANLVTLQG- 337
EGE+SKMAPFR+LSFDIECAGRKGHFPE HDPVIQ V N++TL+
Sbjct: 297 EGEYSKMAPFRVLSFDIECAGRKGHFPEAKHDPVIQIANLVTLQGEDHPFVRNVMTLKSC 356
Query: 338 -------------EKQPFIRNVMTLKSCAP--IVGVDVMSFE----TERDVLLAWRDF-- 376
E++ + ++ P I+G ++ F+ ER L +F
Sbjct: 357 APIVGVDVMSFETEREVLLAWRDLIRDVDPDIIIGYNICKFDLPYLIERAATLGIEEFPL 416
Query: 377 ----------------------IREVDPDVMIG------------------YNICKFDLP 396
IRE + G Y++
Sbjct: 417 LGRVKNSRVRVRDSTFSSRQQGIRESKETTIEGRFQFDLIQAIHRDHKLSSYSLNSVSAH 476
Query: 397 YLIE-KEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTG 455
+L E KEDVHHSII+DLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFI+NYVEMARVTG
Sbjct: 477 FLSEQKEDVHHSIITDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTG 536
Query: 456 VPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPI 515
VPISFLL+RGQSIKVLSQLLRK KQKNLV+PN KQ+GSEQGTYEGATVLEAR GFYEKPI
Sbjct: 537 VPISFLLARGQSIKVLSQLLRKGKQKNLVLPNAKQSGSEQGTYEGATVLEARTGFYEKPI 596
Query: 516 ATLDFASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGETFVKSNLQKGILPE 575
ATLDFASLYPSIMMAYNLCY TLVTPED RKLNLPPE V KTPSGETFVK LQKGILPE
Sbjct: 597 ATLDFASLYPSIMMAYNLCYCTLVTPEDVRKLNLPPEHVTKTPSGETFVKQTLQKGILPE 656
Query: 576 ILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISS 635
ILEELL ARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPC+EISS
Sbjct: 657 ILEELLTARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISS 716
Query: 636 SVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREA 695
SVTSYGRQMIE TKKLVEDKFTT+GGY++NAEVIYGDTDSVMVQFGV VEAAM LGREA
Sbjct: 717 SVTSYGRQMIEQTKKLVEDKFTTLGGYQYNAEVIYGDTDSVMVQFGVSDVEAAMTLGREA 776
Query: 696 ADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLL 755
A++ISGTFIKPIKLEFEKVY+PYLLI+KKRYAGL WTNP++FDKMDTKGIETVRRDNCLL
Sbjct: 777 AEHISGTFIKPIKLEFEKVYFPYLLINKKRYAGLLWTNPQQFDKMDTKGIETVRRDNCLL 836
Query: 756 VKNLVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAA 815
VKNLVTE L+KIL+DRD+PGA + VK TISDLLMNR+DLSLLVITKGLTKTGDDYEVK+A
Sbjct: 837 VKNLVTESLNKILIDRDVPGAAENVKKTISDLLMNRIDLSLLVITKGLTKTGDDYEVKSA 896
Query: 816 HVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLE 875
H ELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVL+NNIPID +YYLE
Sbjct: 897 HGELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLQNNIPIDPNYYLE 956
Query: 876 NQISKPLLRIFEPILKNASKELLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISN 935
NQISKPLLRIFEP+LKNASKELL G HTRSISI+TPSNSGIMKFAK+QLSC+GCK ISN
Sbjct: 957 NQISKPLLRIFEPVLKNASKELLHGSHTRSISITTPSNSGIMKFAKKQLSCVGCKVPISN 1016
Query: 936 GTLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR 995
GTLC+ CKGREAELYCK VSQV ELE +FGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR
Sbjct: 1017 GTLCASCKGREAELYCKNVSQVAELEEVFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR 1076
Query: 996 KKAQKDMAEAKLQLDRWNF 1014
KAQKDMA A+ QLDRW+F
Sbjct: 1077 MKAQKDMAVARQQLDRWSF 1095
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This polymerase possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single stranded DNA in the 3'- to 5'-direction. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 7 |
| >sp|Q9LRE6|DPOD1_ORYSJ DNA polymerase delta catalytic subunit OS=Oryza sativa subsp. japonica GN=POLD1 PE=2 SV=1 | Back alignment and function description |
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| >sp|O48901|DPOD1_SOYBN DNA polymerase delta catalytic subunit OS=Glycine max GN=POLD1 PE=2 SV=1 | Back alignment and function description |
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| >sp|P30316|DPOD_SCHPO DNA polymerase delta catalytic subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pol3 PE=1 SV=2 | Back alignment and function description |
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| >sp|P52431|DPOD1_MOUSE DNA polymerase delta catalytic subunit OS=Mus musculus GN=Pold1 PE=1 SV=2 | Back alignment and function description |
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| >sp|P28340|DPOD1_HUMAN DNA polymerase delta catalytic subunit OS=Homo sapiens GN=POLD1 PE=1 SV=2 | Back alignment and function description |
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| >sp|O54747|DPOD1_RAT DNA polymerase delta catalytic subunit OS=Rattus norvegicus GN=Pold1 PE=2 SV=1 | Back alignment and function description |
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| >sp|P97283|DPOD1_MESAU DNA polymerase delta catalytic subunit OS=Mesocricetus auratus GN=POLD1 PE=2 SV=1 | Back alignment and function description |
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| >sp|P28339|DPOD1_BOVIN DNA polymerase delta catalytic subunit OS=Bos taurus GN=POLD1 PE=1 SV=1 | Back alignment and function description |
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| >sp|P46588|DPOD_CANAX DNA polymerase delta catalytic subunit OS=Candida albicans GN=POL3 PE=3 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1014 | ||||||
| 186532719 | 1095 | DNA polymerase delta subunit 1 [Arabidop | 0.996 | 0.922 | 0.744 | 0.0 | |
| 297793989 | 1092 | DNA-directed DNA polymerase delta cataly | 0.991 | 0.920 | 0.741 | 0.0 | |
| 255549385 | 1049 | DNA polymerase delta catalytic subunit, | 0.987 | 0.954 | 0.745 | 0.0 | |
| 8777309 | 1081 | DNA polymerase III catalytic subunit [Ar | 0.914 | 0.857 | 0.732 | 0.0 | |
| 302801963 | 980 | hypothetical protein SELMODRAFT_155333 [ | 0.892 | 0.923 | 0.711 | 0.0 | |
| 225431691 | 1089 | PREDICTED: DNA polymerase delta catalyti | 0.606 | 0.564 | 0.944 | 0.0 | |
| 449451191 | 1086 | PREDICTED: DNA polymerase delta catalyti | 0.606 | 0.566 | 0.922 | 0.0 | |
| 224083478 | 1081 | predicted protein [Populus trichocarpa] | 0.606 | 0.568 | 0.915 | 0.0 | |
| 218185393 | 1087 | hypothetical protein OsI_35398 [Oryza sa | 0.606 | 0.565 | 0.910 | 0.0 | |
| 242070347 | 1099 | hypothetical protein SORBIDRAFT_05g00568 | 0.606 | 0.559 | 0.910 | 0.0 |
| >gi|186532719|ref|NP_201201.2| DNA polymerase delta subunit 1 [Arabidopsis thaliana] gi|322510022|sp|Q9LVN7.2|DPOD1_ARATH RecName: Full=DNA polymerase delta catalytic subunit; AltName: Full=Protein EMBRYO DEFECTIVE 2780 gi|76262800|gb|ABA41487.1| DNA-directed DNA polymerase delta catalytic subunit [Arabidopsis thaliana] gi|332010438|gb|AED97821.1| DNA polymerase delta subunit 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Score = 1623 bits (4204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 818/1099 (74%), Positives = 903/1099 (82%), Gaps = 89/1099 (8%)
Query: 1 MNRSNGSARKRPPPTPKESWPNKQQATTPTTP-----VIDDEFL-DEDVFLDETLL--PE 52
MNRS G ++KRPPP+ K +AT +TP +DDEF+ +EDVFLDETLL E
Sbjct: 1 MNRS-GISKKRPPPSNTPPPAGKHRATGDSTPSPAIGTLDDEFMMEEDVFLDETLLYGDE 59
Query: 53 DEESLILRDIEQRQDFASRLAKWARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNRELLPL 112
DEESLILRDIE+R+ SR + WARPPLS Y+S QSI+FQQL+ID +I +S++ELLP
Sbjct: 60 DEESLILRDIEERE---SRSSAWARPPLSPAYLSNSQSIIFQQLEIDSIIAESHKELLPG 116
Query: 113 SSGSAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDDISHFHQILEGRMREANR 172
SSG A IIR+FGVTREG+SVCC VHGFEPYFYI+CP GMGPDDIS+FHQ LEGRMRE+N+
Sbjct: 117 SSGQAPIIRMFGVTREGNSVCCFVHGFEPYFYIACPPGMGPDDISNFHQSLEGRMRESNK 176
Query: 173 NSKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMK 232
N+KVP+FV+ IEMVQKRSIMYYQQQKSQ FLKI VALPTMVASCRGILDRG+Q+DGLGMK
Sbjct: 177 NAKVPKFVKRIEMVQKRSIMYYQQQKSQTFLKITVALPTMVASCRGILDRGLQIDGLGMK 236
Query: 233 SFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHP 292
SF TYESN+LF LRFM+DC+IVGGNWIEVP GKY+K A+TLSYCQLEF CLYSD+IS
Sbjct: 237 SFQTYESNILFVLRFMVDCDIVGGNWIEVPTGKYKKNARTLSYCQLEFHCLYSDLISHAA 296
Query: 293 EGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQ--------------VANLVTLQG- 337
EGE+SKMAPFR+LSFDIECAGRKGHFPE HDPVIQ V N++TL+
Sbjct: 297 EGEYSKMAPFRVLSFDIECAGRKGHFPEAKHDPVIQIANLVTLQGEDHPFVRNVMTLKSC 356
Query: 338 -------------EKQPFIRNVMTLKSCAP--IVGVDVMSFE----TERDVLLAWRDF-- 376
E++ + ++ P I+G ++ F+ ER L +F
Sbjct: 357 APIVGVDVMSFETEREVLLAWRDLIRDVDPDIIIGYNICKFDLPYLIERAATLGIEEFPL 416
Query: 377 ----------------------IREVDPDVMIG------------------YNICKFDLP 396
IRE + G Y++
Sbjct: 417 LGRVKNSRVRVRDSTFSSRQQGIRESKETTIEGRFQFDLIQAIHRDHKLSSYSLNSVSAH 476
Query: 397 YLIE-KEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTG 455
+L E KEDVHHSII+DLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFI+NYVEMARVTG
Sbjct: 477 FLSEQKEDVHHSIITDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTG 536
Query: 456 VPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPI 515
VPISFLL+RGQSIKVLSQLLRK KQKNLV+PN KQ+GSEQGTYEGATVLEAR GFYEKPI
Sbjct: 537 VPISFLLARGQSIKVLSQLLRKGKQKNLVLPNAKQSGSEQGTYEGATVLEARTGFYEKPI 596
Query: 516 ATLDFASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGETFVKSNLQKGILPE 575
ATLDFASLYPSIMMAYNLCY TLVTPED RKLNLPPE V KTPSGETFVK LQKGILPE
Sbjct: 597 ATLDFASLYPSIMMAYNLCYCTLVTPEDVRKLNLPPEHVTKTPSGETFVKQTLQKGILPE 656
Query: 576 ILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISS 635
ILEELL ARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPC+EISS
Sbjct: 657 ILEELLTARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISS 716
Query: 636 SVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREA 695
SVTSYGRQMIE TKKLVEDKFTT+GGY++NAEVIYGDTDSVMVQFGV VEAAM LGREA
Sbjct: 717 SVTSYGRQMIEQTKKLVEDKFTTLGGYQYNAEVIYGDTDSVMVQFGVSDVEAAMTLGREA 776
Query: 696 ADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLL 755
A++ISGTFIKPIKLEFEKVY+PYLLI+KKRYAGL WTNP++FDKMDTKGIETVRRDNCLL
Sbjct: 777 AEHISGTFIKPIKLEFEKVYFPYLLINKKRYAGLLWTNPQQFDKMDTKGIETVRRDNCLL 836
Query: 756 VKNLVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAA 815
VKNLVTE L+KIL+DRD+PGA + VK TISDLLMNR+DLSLLVITKGLTKTGDDYEVK+A
Sbjct: 837 VKNLVTESLNKILIDRDVPGAAENVKKTISDLLMNRIDLSLLVITKGLTKTGDDYEVKSA 896
Query: 816 HVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLE 875
H ELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVL+NNIPID +YYLE
Sbjct: 897 HGELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLQNNIPIDPNYYLE 956
Query: 876 NQISKPLLRIFEPILKNASKELLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISN 935
NQISKPLLRIFEP+LKNASKELL G HTRSISI+TPSNSGIMKFAK+QLSC+GCK ISN
Sbjct: 957 NQISKPLLRIFEPVLKNASKELLHGSHTRSISITTPSNSGIMKFAKKQLSCVGCKVPISN 1016
Query: 936 GTLCSHCKGREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR 995
GTLC+ CKGREAELYCK VSQV ELE +FGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR
Sbjct: 1017 GTLCASCKGREAELYCKNVSQVAELEEVFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR 1076
Query: 996 KKAQKDMAEAKLQLDRWNF 1014
KAQKDMA A+ QLDRW+F
Sbjct: 1077 MKAQKDMAVARQQLDRWSF 1095
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297793989|ref|XP_002864879.1| DNA-directed DNA polymerase delta catalytic subunit [Arabidopsis lyrata subsp. lyrata] gi|297310714|gb|EFH41138.1| DNA-directed DNA polymerase delta catalytic subunit [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|255549385|ref|XP_002515746.1| DNA polymerase delta catalytic subunit, putative [Ricinus communis] gi|223545183|gb|EEF46693.1| DNA polymerase delta catalytic subunit, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|8777309|dbj|BAA96899.1| DNA polymerase III catalytic subunit [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|302801963|ref|XP_002982737.1| hypothetical protein SELMODRAFT_155333 [Selaginella moellendorffii] gi|300149327|gb|EFJ15982.1| hypothetical protein SELMODRAFT_155333 [Selaginella moellendorffii] | Back alignment and taxonomy information |
|---|
| >gi|225431691|ref|XP_002264385.1| PREDICTED: DNA polymerase delta catalytic subunit [Vitis vinifera] gi|296088521|emb|CBI37512.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449451191|ref|XP_004143345.1| PREDICTED: DNA polymerase delta catalytic subunit-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224083478|ref|XP_002307042.1| predicted protein [Populus trichocarpa] gi|222856491|gb|EEE94038.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|218185393|gb|EEC67820.1| hypothetical protein OsI_35398 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
| >gi|242070347|ref|XP_002450450.1| hypothetical protein SORBIDRAFT_05g005680 [Sorghum bicolor] gi|241936293|gb|EES09438.1| hypothetical protein SORBIDRAFT_05g005680 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1014 | ||||||
| UNIPROTKB|Q9LRE6 | 1105 | POLD1 "DNA polymerase delta ca | 0.639 | 0.586 | 0.830 | 0.0 | |
| UNIPROTKB|A8HPJ0 | 1091 | POLD1 "DNA polymerase" [Chlamy | 0.634 | 0.589 | 0.619 | 2e-294 | |
| RGD|621839 | 1103 | Pold1 "polymerase (DNA directe | 0.602 | 0.553 | 0.609 | 1.4e-280 | |
| UNIPROTKB|O54747 | 1103 | Pold1 "DNA polymerase delta ca | 0.602 | 0.553 | 0.609 | 1.4e-280 | |
| UNIPROTKB|P28340 | 1107 | POLD1 "DNA polymerase delta ca | 0.670 | 0.614 | 0.563 | 2.3e-280 | |
| MGI|MGI:97741 | 1105 | Pold1 "polymerase (DNA directe | 0.602 | 0.552 | 0.611 | 2.3e-280 | |
| ZFIN|ZDB-GENE-060429-1 | 1105 | pold1 "polymerase (DNA directe | 0.604 | 0.554 | 0.628 | 6.2e-280 | |
| UNIPROTKB|P28339 | 1106 | POLD1 "DNA polymerase delta ca | 0.602 | 0.552 | 0.604 | 1.6e-279 | |
| UNIPROTKB|F1RH32 | 1107 | POLD1 "DNA polymerase" [Sus sc | 0.602 | 0.551 | 0.602 | 1.3e-277 | |
| UNIPROTKB|E2R5W5 | 1107 | POLD1 "DNA polymerase" [Canis | 0.602 | 0.551 | 0.602 | 1.7e-275 |
| UNIPROTKB|Q9LRE6 POLD1 "DNA polymerase delta catalytic subunit" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2782 (984.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 544/655 (83%), Positives = 582/655 (88%)
Query: 367 RDVLLAWR---DFIREVDPDVMIG-YNICKFDLPYLIE-KEDVHHSIISDLQNGNAETRR 421
+DV + R D ++ + D + Y++ +L E KEDVHHSIISDLQNGN+ETRR
Sbjct: 451 KDVAVEGRVQFDLLQAMQRDYKLSSYSLNSVSAHFLGEQKEDVHHSIISDLQNGNSETRR 510
Query: 422 RLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQK 481
RLAVYCLKDAYLPQRLLDKLM+I+NYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQK
Sbjct: 511 RLAVYCLKDAYLPQRLLDKLMYIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQK 570
Query: 482 NLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTP 541
NLVIPN+K S Q T+EGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCY TLV P
Sbjct: 571 NLVIPNIKGQASGQDTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVPP 630
Query: 542 EDARKLNLPPECVNKTPSGETFVKSNLQKGXXXXXXXXXXXXXXXXXXXXXXXXXPLEKA 601
EDARKLNLPPE VNKTPSGETFVK ++QKG P E+A
Sbjct: 631 EDARKLNLPPESVNKTPSGETFVKPDVQKGILPEILEELLAARKRAKADLKEAKDPFERA 690
Query: 602 VLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGG 661
VLDGRQLALKISANSVYGFTGATVGQLPC+EISSSVTSYGRQMIEHTKKLVEDKFTT+GG
Sbjct: 691 VLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGG 750
Query: 662 YEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVYYPYLLI 721
YEHNAEVIYGDTDSVMVQFGV TVE AMKLGREAADYISGTFIKPIKLEFEK+Y+PYLLI
Sbjct: 751 YEHNAEVIYGDTDSVMVQFGVSTVEDAMKLGREAADYISGTFIKPIKLEFEKIYFPYLLI 810
Query: 722 SKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYVK 781
SKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRD+PGAVQYVK
Sbjct: 811 SKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDVPGAVQYVK 870
Query: 782 STISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYV 841
+TISDLLMNR+DLSLLVITKGLTKTG+DY VKAAHVELAERMRKRDAATAP VGDRVPYV
Sbjct: 871 NTISDLLMNRVDLSLLVITKGLTKTGEDYAVKAAHVELAERMRKRDAATAPTVGDRVPYV 930
Query: 842 IIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQISKPLLRIFEPILKNASKELLSGD 901
IIKAAKGAKAYERSEDPIYVL+NNIPID YYLENQISKPLLRIFEPILKNAS+ELL G
Sbjct: 931 IIKAAKGAKAYERSEDPIYVLDNNIPIDPQYYLENQISKPLLRIFEPILKNASRELLHGS 990
Query: 902 HTRSISISTPSNSGIMKFAKRQLSCIGCKALIS--NGTLCSHCKGREAELYCKTVSQVQE 959
HTR++SISTPSNSGIMKFAK+QL+C+GCKA+IS N TLC HCKGREAELYCKTV V E
Sbjct: 991 HTRAVSISTPSNSGIMKFAKKQLTCLGCKAVISGSNQTLCFHCKGREAELYCKTVGNVSE 1050
Query: 960 LEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKLQLDRWNF 1014
LE+LFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRR+KAQKDMAEA++QL RW+F
Sbjct: 1051 LEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRRKAQKDMAEARVQLQRWDF 1105
|
|
| UNIPROTKB|A8HPJ0 POLD1 "DNA polymerase" [Chlamydomonas reinhardtii (taxid:3055)] | Back alignment and assigned GO terms |
|---|
| RGD|621839 Pold1 "polymerase (DNA directed), delta 1, catalytic subunit" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|O54747 Pold1 "DNA polymerase delta catalytic subunit" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P28340 POLD1 "DNA polymerase delta catalytic subunit" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:97741 Pold1 "polymerase (DNA directed), delta 1, catalytic subunit" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-060429-1 pold1 "polymerase (DNA directed), delta 1, catalytic subunit" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P28339 POLD1 "DNA polymerase delta catalytic subunit" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1RH32 POLD1 "DNA polymerase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2R5W5 POLD1 "DNA polymerase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O48901 | DPOD1_SOYBN | 2, ., 7, ., 7, ., 7 | 0.8868 | 0.5483 | 0.5110 | yes | no |
| Q9LRE6 | DPOD1_ORYSJ | 2, ., 7, ., 7, ., 7 | 0.9092 | 0.6065 | 0.5565 | yes | no |
| Q9LVN7 | DPOD1_ARATH | 2, ., 7, ., 7, ., 7 | 0.7443 | 0.9960 | 0.9223 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.7 | 0.983 |
| 4th Layer | 2.7.7.7 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1014 | |||
| PTZ00166 | 1054 | PTZ00166, PTZ00166, DNA polymerase delta catalytic | 0.0 | |
| cd05533 | 393 | cd05533, POLBc_delta, DNA polymerase type-B delta | 0.0 | |
| pfam00136 | 458 | pfam00136, DNA_pol_B, DNA polymerase family B | 1e-170 | |
| COG0417 | 792 | COG0417, PolB, DNA polymerase elongation subunit ( | 1e-149 | |
| PTZ00166 | 1054 | PTZ00166, PTZ00166, DNA polymerase delta catalytic | 1e-117 | |
| cd05534 | 451 | cd05534, POLBc_zeta, DNA polymerase type-B zeta su | 1e-101 | |
| cd00145 | 323 | cd00145, POLBc, DNA polymerase type-B family catal | 3e-94 | |
| cd05532 | 400 | cd05532, POLBc_alpha, DNA polymerase type-B alpha | 4e-89 | |
| smart00486 | 474 | smart00486, POLBc, DNA polymerase type-B family | 1e-87 | |
| PRK05762 | 786 | PRK05762, PRK05762, DNA polymerase II; Reviewed | 7e-82 | |
| cd05536 | 371 | cd05536, POLBc_B3, DNA polymerase type-B B3 subfam | 1e-79 | |
| TIGR00592 | 1172 | TIGR00592, pol2, DNA polymerase (pol2) | 2e-74 | |
| cd05777 | 230 | cd05777, DNA_polB_delta_exo, DEDDy 3'-5' exonuclea | 2e-63 | |
| cd05537 | 371 | cd05537, POLBc_Pol_II, DNA polymerase type-II subf | 8e-52 | |
| pfam03104 | 254 | pfam03104, DNA_pol_B_exo1, DNA polymerase family B | 2e-51 | |
| PRK05761 | 787 | PRK05761, PRK05761, DNA polymerase I; Reviewed | 1e-47 | |
| COG0417 | 792 | COG0417, PolB, DNA polymerase elongation subunit ( | 8e-34 | |
| cd05531 | 352 | cd05531, POLBc_B2, DNA polymerase type-B B2 subfam | 1e-32 | |
| PHA03036 | 1004 | PHA03036, PHA03036, DNA polymerase; Provisional | 4e-30 | |
| cd05777 | 230 | cd05777, DNA_polB_delta_exo, DEDDy 3'-5' exonuclea | 1e-29 | |
| cd05530 | 372 | cd05530, POLBc_B1, DNA polymerase type-B B1 subfam | 1e-28 | |
| cd05538 | 347 | cd05538, POLBc_Pol_II_B, DNA polymerase type-II B | 1e-28 | |
| pfam14260 | 73 | pfam14260, zf-C4pol, C4-type zinc-finger of DNA po | 6e-27 | |
| cd05160 | 199 | cd05160, DEDDy_DNA_polB_exo, DEDDy 3'-5' exonuclea | 2e-24 | |
| smart00486 | 474 | smart00486, POLBc, DNA polymerase type-B family | 2e-23 | |
| PHA02528 | 881 | PHA02528, 43, DNA polymerase; Provisional | 1e-16 | |
| PRK05762 | 786 | PRK05762, PRK05762, DNA polymerase II; Reviewed | 2e-16 | |
| PHA03334 | 1545 | PHA03334, PHA03334, putative DNA polymerase cataly | 9e-16 | |
| cd05781 | 188 | cd05781, DNA_polB_B3_exo, DEDDy 3'-5' exonuclease | 2e-10 | |
| cd05780 | 195 | cd05780, DNA_polB_Kod1_like_exo, DEDDy 3'-5' exonu | 5e-09 | |
| cd05779 | 204 | cd05779, DNA_polB_epsilon_exo, DEDDy 3'-5' exonucl | 3e-08 | |
| cd05784 | 193 | cd05784, DNA_polB_II_exo, DEDDy 3'-5' exonuclease | 7e-08 | |
| TIGR00592 | 1172 | TIGR00592, pol2, DNA polymerase (pol2) | 1e-06 | |
| TIGR00592 | 1172 | TIGR00592, pol2, DNA polymerase (pol2) | 1e-06 | |
| PHA02528 | 881 | PHA02528, 43, DNA polymerase; Provisional | 5e-06 | |
| cd05778 | 231 | cd05778, DNA_polB_zeta_exo, inactive DEDDy 3'-5' e | 1e-05 | |
| cd05785 | 207 | cd05785, DNA_polB_like2_exo, Uncharacterized bacte | 1e-05 | |
| pfam03104 | 254 | pfam03104, DNA_pol_B_exo1, DNA polymerase family B | 3e-04 | |
| cd05776 | 234 | cd05776, DNA_polB_alpha_exo, inactive DEDDy 3'-5' | 7e-04 | |
| cd05783 | 204 | cd05783, DNA_polB_B1_exo, DEDDy 3'-5' exonuclease | 9e-04 |
| >gnl|CDD|240301 PTZ00166, PTZ00166, DNA polymerase delta catalytic subunit; Provisional | Back alignment and domain information |
|---|
Score = 1084 bits (2806), Expect = 0.0
Identities = 397/617 (64%), Positives = 493/617 (79%), Gaps = 9/617 (1%)
Query: 400 EKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPIS 459
+KEDVH+SIISDLQNG+ ETRRR+AVYCLKDA LP RLLDKL+ I+NYVEMARVTG PI
Sbjct: 441 QKEDVHYSIISDLQNGSPETRRRIAVYCLKDAILPLRLLDKLLLIYNYVEMARVTGTPIG 500
Query: 460 FLLSRGQSIKVLSQLLRKAKQKNLVIPNVK-QAGSEQGTYEGATVLEARAGFYEKPIATL 518
+LL+RGQ IKV SQLLRK K+ N VIP VK G + YEGATVLE + GFY++PIATL
Sbjct: 501 WLLTRGQQIKVTSQLLRKCKKLNYVIPTVKYSGGGSEEKYEGATVLEPKKGFYDEPIATL 560
Query: 519 DFASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGETFVKSNLQKGILPEILE 578
DFASLYPSIM+A+NLCYSTLV P DA N P + TP+G+ FVK ++KGILP I+E
Sbjct: 561 DFASLYPSIMIAHNLCYSTLVPPNDAN--NYPEDTYVTTPTGDKFVKKEVRKGILPLIVE 618
Query: 579 ELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATV-GQLPCIEISSSV 637
EL+AARK+AK ++K+ KDPL K VL+GRQLALKISANSVYG+TGA V GQLPC+E+S+S+
Sbjct: 619 ELIAARKKAKKEMKDEKDPLLKKVLNGRQLALKISANSVYGYTGAQVGGQLPCLEVSTSI 678
Query: 638 TSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAAD 697
TS+GRQMI+ TK+LVE +T GY+H+A VIYGDTDSVMV+FG ++ AM LG+EAA+
Sbjct: 679 TSFGRQMIDKTKELVEKHYTKANGYKHDATVIYGDTDSVMVKFGTDDIQEAMDLGKEAAE 738
Query: 698 YISGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVK 757
IS F+KPIKLEFEKVY PYLL++KKRYAGL +TNPEK+DK+D KGIETVRRDNCLLV+
Sbjct: 739 RISKKFLKPIKLEFEKVYCPYLLMNKKRYAGLLYTNPEKYDKIDCKGIETVRRDNCLLVQ 798
Query: 758 NLVTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHV 817
+V L+KIL+++D+ A+++ K ISDLL NR+D+SLLVITK L K DDYE + AHV
Sbjct: 799 QMVETVLNKILIEKDVESAIEFTKGKISDLLQNRIDISLLVITKSLGK--DDYEGRLAHV 856
Query: 818 ELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQ 877
ELA+++R+RD +APNVGDRV YVI+K AKGA YER+EDP+YVLENNIPIDT YYL+ Q
Sbjct: 857 ELAKKLRQRDPGSAPNVGDRVSYVIVKGAKGAPQYERAEDPLYVLENNIPIDTQYYLD-Q 915
Query: 878 ISKPLLRIFEPILKNASKELLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISNGT 937
I PLLRIFE ++ N L SG+HTR I+IS+ S G+ KF K+QL C+GCK++I G
Sbjct: 916 IKNPLLRIFEGVMDNPDS-LFSGEHTRHITISSSSKGGLSKFVKKQLQCLGCKSVIKEGA 974
Query: 938 LCSHCK-GREAELYCKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRK 996
LC +C +E +Y K +++ + E + +LWTQCQ CQGSLHQ+V+CT+RDCPIFYRRK
Sbjct: 975 LCDNCNQNKEPSIYGKKLAKRRHKEAEYSQLWTQCQRCQGSLHQEVICTNRDCPIFYRRK 1034
Query: 997 KAQKDMAEAKLQLDRWN 1013
K QKD+AE + L R+
Sbjct: 1035 KVQKDLAELQELLSRFG 1051
|
Length = 1054 |
| >gnl|CDD|99916 cd05533, POLBc_delta, DNA polymerase type-B delta subfamily catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|215742 pfam00136, DNA_pol_B, DNA polymerase family B | Back alignment and domain information |
|---|
| >gnl|CDD|223494 COG0417, PolB, DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|240301 PTZ00166, PTZ00166, DNA polymerase delta catalytic subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|99917 cd05534, POLBc_zeta, DNA polymerase type-B zeta subfamily catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|99912 cd00145, POLBc, DNA polymerase type-B family catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|99915 cd05532, POLBc_alpha, DNA polymerase type-B alpha subfamily catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|214691 smart00486, POLBc, DNA polymerase type-B family | Back alignment and domain information |
|---|
| >gnl|CDD|235595 PRK05762, PRK05762, DNA polymerase II; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|99919 cd05536, POLBc_B3, DNA polymerase type-B B3 subfamily catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|233037 TIGR00592, pol2, DNA polymerase (pol2) | Back alignment and domain information |
|---|
| >gnl|CDD|99820 cd05777, DNA_polB_delta_exo, DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase | Back alignment and domain information |
|---|
| >gnl|CDD|99920 cd05537, POLBc_Pol_II, DNA polymerase type-II subfamily catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|217371 pfam03104, DNA_pol_B_exo1, DNA polymerase family B, exonuclease domain | Back alignment and domain information |
|---|
| >gnl|CDD|235594 PRK05761, PRK05761, DNA polymerase I; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|223494 COG0417, PolB, DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|99914 cd05531, POLBc_B2, DNA polymerase type-B B2 subfamily catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|222962 PHA03036, PHA03036, DNA polymerase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|99820 cd05777, DNA_polB_delta_exo, DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase | Back alignment and domain information |
|---|
| >gnl|CDD|99913 cd05530, POLBc_B1, DNA polymerase type-B B1 subfamily catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|99921 cd05538, POLBc_Pol_II_B, DNA polymerase type-II B subfamily catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|222632 pfam14260, zf-C4pol, C4-type zinc-finger of DNA polymerase delta | Back alignment and domain information |
|---|
| >gnl|CDD|176646 cd05160, DEDDy_DNA_polB_exo, DEDDy 3'-5' exonuclease domain of family-B DNA polymerases | Back alignment and domain information |
|---|
| >gnl|CDD|214691 smart00486, POLBc, DNA polymerase type-B family | Back alignment and domain information |
|---|
| >gnl|CDD|177369 PHA02528, 43, DNA polymerase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235595 PRK05762, PRK05762, DNA polymerase II; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|223049 PHA03334, PHA03334, putative DNA polymerase catalytic subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|99824 cd05781, DNA_polB_B3_exo, DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases | Back alignment and domain information |
|---|
| >gnl|CDD|99823 cd05780, DNA_polB_Kod1_like_exo, DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases | Back alignment and domain information |
|---|
| >gnl|CDD|99822 cd05779, DNA_polB_epsilon_exo, DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase | Back alignment and domain information |
|---|
| >gnl|CDD|99827 cd05784, DNA_polB_II_exo, DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases | Back alignment and domain information |
|---|
| >gnl|CDD|233037 TIGR00592, pol2, DNA polymerase (pol2) | Back alignment and domain information |
|---|
| >gnl|CDD|233037 TIGR00592, pol2, DNA polymerase (pol2) | Back alignment and domain information |
|---|
| >gnl|CDD|177369 PHA02528, 43, DNA polymerase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|99821 cd05778, DNA_polB_zeta_exo, inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta, a family-B DNA polymerase | Back alignment and domain information |
|---|
| >gnl|CDD|99828 cd05785, DNA_polB_like2_exo, Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases | Back alignment and domain information |
|---|
| >gnl|CDD|217371 pfam03104, DNA_pol_B_exo1, DNA polymerase family B, exonuclease domain | Back alignment and domain information |
|---|
| >gnl|CDD|99819 cd05776, DNA_polB_alpha_exo, inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a family-B DNA polymerase | Back alignment and domain information |
|---|
| >gnl|CDD|99826 cd05783, DNA_polB_B1_exo, DEDDy 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal family-B DNA polymerases | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1014 | |||
| KOG0969 | 1066 | consensus DNA polymerase delta, catalytic subunit | 100.0 | |
| PTZ00166 | 1054 | DNA polymerase delta catalytic subunit; Provisiona | 100.0 | |
| KOG0968 | 1488 | consensus DNA polymerase zeta, catalytic subunit [ | 100.0 | |
| KOG0970 | 1429 | consensus DNA polymerase alpha, catalytic subunit | 100.0 | |
| PRK05761 | 787 | DNA polymerase I; Reviewed | 100.0 | |
| PRK05762 | 786 | DNA polymerase II; Reviewed | 100.0 | |
| COG0417 | 792 | PolB DNA polymerase elongation subunit (family B) | 100.0 | |
| PHA03036 | 1004 | DNA polymerase; Provisional | 100.0 | |
| TIGR00592 | 1172 | pol2 DNA polymerase (pol2). This family is based o | 100.0 | |
| PHA02528 | 881 | 43 DNA polymerase; Provisional | 100.0 | |
| cd05533 | 393 | POLBc_delta DNA polymerase type-B delta subfamily | 100.0 | |
| cd05534 | 451 | POLBc_zeta DNA polymerase type-B zeta subfamily ca | 100.0 | |
| cd05532 | 400 | POLBc_alpha DNA polymerase type-B alpha subfamily | 100.0 | |
| PF00136 | 466 | DNA_pol_B: DNA polymerase family B Several related | 100.0 | |
| cd05536 | 371 | POLBc_B3 DNA polymerase type-B B3 subfamily cataly | 100.0 | |
| cd05537 | 371 | POLBc_Pol_II DNA polymerase type-II subfamily cata | 100.0 | |
| cd05530 | 372 | POLBc_B1 DNA polymerase type-B B1 subfamily cataly | 100.0 | |
| cd00145 | 323 | POLBc DNA polymerase type-B family catalytic domai | 100.0 | |
| cd05538 | 347 | POLBc_Pol_II_B DNA polymerase type-II B subfamily | 100.0 | |
| cd05531 | 352 | POLBc_B2 DNA polymerase type-B B2 subfamily cataly | 100.0 | |
| PHA03334 | 1545 | putative DNA polymerase catalytic subunit; Provisi | 100.0 | |
| KOG1798 | 2173 | consensus DNA polymerase epsilon, catalytic subuni | 100.0 | |
| smart00486 | 471 | POLBc DNA polymerase type-B family. DNA polymerase | 100.0 | |
| cd05535 | 621 | POLBc_epsilon DNA polymerase type-B epsilon subfam | 100.0 | |
| PHA02524 | 498 | 43A DNA polymerase subunit A; Provisional | 100.0 | |
| PF03104 | 325 | DNA_pol_B_exo1: DNA polymerase family B, exonuclea | 100.0 | |
| TIGR00592 | 1172 | pol2 DNA polymerase (pol2). This family is based o | 100.0 | |
| PHA02523 | 391 | 43B DNA polymerase subunit B; Provisional | 100.0 | |
| cd05777 | 230 | DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain | 99.96 | |
| cd05778 | 231 | DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease | 99.92 | |
| cd05779 | 204 | DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domai | 99.89 | |
| cd05780 | 195 | DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease dom | 99.87 | |
| PHA02563 | 630 | DNA polymerase; Provisional | 99.86 | |
| cd05781 | 188 | DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of | 99.84 | |
| cd05783 | 204 | DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of | 99.8 | |
| cd05160 | 199 | DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain | 99.8 | |
| cd05785 | 207 | DNA_polB_like2_exo Uncharacterized bacterial subgr | 99.8 | |
| cd05784 | 193 | DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of | 99.77 | |
| cd05776 | 234 | DNA_polB_alpha_exo inactive DEDDy 3'-5' exonucleas | 99.74 | |
| PF14260 | 73 | zf-C4pol: C4-type zinc-finger of DNA polymerase de | 99.56 | |
| cd05782 | 208 | DNA_polB_like1_exo Uncharacterized bacterial subgr | 99.32 | |
| PF10108 | 209 | DNA_pol_B_exo2: Predicted 3'-5' exonuclease relate | 98.59 | |
| PF13482 | 164 | RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A | 98.05 | |
| PHA02735 | 716 | putative DNA polymerase type B; Provisional | 97.88 | |
| PF08490 | 396 | DUF1744: Domain of unknown function (DUF1744); Int | 97.86 | |
| COG3359 | 278 | Predicted exonuclease [DNA replication, recombinat | 97.41 | |
| PRK06309 | 232 | DNA polymerase III subunit epsilon; Validated | 96.62 | |
| cd06125 | 96 | DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonucleas | 96.29 | |
| TIGR00573 | 217 | dnaq exonuclease, DNA polymerase III, epsilon subu | 96.04 | |
| PRK06310 | 250 | DNA polymerase III subunit epsilon; Validated | 96.0 | |
| smart00479 | 169 | EXOIII exonuclease domain in DNA-polymerase alpha | 95.91 | |
| cd06136 | 177 | TREX1_2 DEDDh 3'-5' exonuclease domain of three pr | 95.9 | |
| cd06138 | 183 | ExoI_N N-terminal DEDDh 3'-5' exonuclease domain o | 95.84 | |
| PRK09145 | 202 | DNA polymerase III subunit epsilon; Validated | 95.77 | |
| PRK08517 | 257 | DNA polymerase III subunit epsilon; Provisional | 95.76 | |
| PRK05711 | 240 | DNA polymerase III subunit epsilon; Provisional | 95.69 | |
| cd06130 | 156 | DNA_pol_III_epsilon_like an uncharacterized bacter | 95.57 | |
| PF08996 | 188 | zf-DNA_Pol: DNA Polymerase alpha zinc finger; Inte | 95.55 | |
| cd06135 | 173 | Orn DEDDh 3'-5' exonuclease domain of oligoribonuc | 95.46 | |
| cd06127 | 159 | DEDDh DEDDh 3'-5' exonuclease domain family. DEDDh | 95.42 | |
| PRK07740 | 244 | hypothetical protein; Provisional | 95.39 | |
| PRK09146 | 239 | DNA polymerase III subunit epsilon; Validated | 95.36 | |
| PRK07942 | 232 | DNA polymerase III subunit epsilon; Provisional | 95.35 | |
| PRK05359 | 181 | oligoribonuclease; Provisional | 95.34 | |
| PRK06807 | 313 | DNA polymerase III subunit epsilon; Validated | 95.26 | |
| PRK06063 | 313 | DNA polymerase III subunit epsilon; Provisional | 95.18 | |
| cd06131 | 167 | DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonucl | 95.06 | |
| PRK05168 | 211 | ribonuclease T; Provisional | 94.94 | |
| PRK07247 | 195 | DNA polymerase III subunit epsilon; Validated | 94.8 | |
| PF03175 | 459 | DNA_pol_B_2: DNA polymerase type B, organellar and | 94.66 | |
| TIGR01406 | 225 | dnaQ_proteo DNA polymerase III, epsilon subunit, P | 94.62 | |
| PRK07883 | 557 | hypothetical protein; Validated | 94.6 | |
| PRK11779 | 476 | sbcB exonuclease I; Provisional | 94.19 | |
| TIGR01405 | 1213 | polC_Gram_pos DNA polymerase III, alpha chain, Gra | 94.19 | |
| KOG1798 | 2173 | consensus DNA polymerase epsilon, catalytic subuni | 94.15 | |
| cd06134 | 189 | RNaseT DEDDh 3'-5' exonuclease domain of RNase T. | 93.91 | |
| PRK06195 | 309 | DNA polymerase III subunit epsilon; Validated | 93.88 | |
| PRK05601 | 377 | DNA polymerase III subunit epsilon; Validated | 93.86 | |
| PRK09182 | 294 | DNA polymerase III subunit epsilon; Validated | 93.55 | |
| TIGR01298 | 200 | RNaseT ribonuclease T. in gamma-subdivision Proteo | 93.54 | |
| PF00929 | 164 | RNase_T: Exonuclease; InterPro: IPR013520 This ent | 93.15 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 92.89 | |
| PRK07748 | 207 | sporulation inhibitor KapD; Provisional | 92.52 | |
| cd06144 | 152 | REX4_like DEDDh 3'-5' exonuclease domain of RNA ex | 92.06 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 91.79 | |
| cd06137 | 161 | DEDDh_RNase DEDDh 3'-5' exonuclease domain of the | 91.07 | |
| TIGR03491 | 457 | RecB family nuclease, putative, TM0106 family. Mem | 90.9 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 90.67 | |
| PHA03181 | 764 | helicase-primase primase subunit; Provisional | 89.2 | |
| cd06149 | 157 | ISG20 DEDDh 3'-5' exonuclease domain of Interferon | 89.03 | |
| cd06133 | 176 | ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain o | 88.91 | |
| cd06145 | 150 | REX1_like DEDDh 3'-5' exonuclease domain of RNA ex | 87.97 | |
| PHA03144 | 746 | helicase-primase primase subunit; Provisional | 86.98 | |
| PRK06722 | 281 | exonuclease; Provisional | 86.63 | |
| COG2176 | 1444 | PolC DNA polymerase III, alpha subunit (gram-posit | 86.01 | |
| COG0847 | 243 | DnaQ DNA polymerase III, epsilon subunit and relat | 83.82 | |
| PF01612 | 176 | DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR00 | 82.66 |
| >KOG0969 consensus DNA polymerase delta, catalytic subunit [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-254 Score=2130.69 Aligned_cols=927 Identities=67% Similarity=1.124 Sum_probs=895.8
Q ss_pred ccCccCCCCCCCCCCCCCCeeEEEEEeEEeeecCCccccCccccCCceEEEEEEEecCCcEEEEEEeCcceEEEEecCCC
Q 001780 71 RLAKWARPPLSSGYVSQCQSIMFQQLDIDYVIGDSNRELLPLSSGSAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQG 150 (1014)
Q Consensus 71 ~~~~~~r~~~~~~~~~~~~~l~Fq~lD~d~~~~~~~~~~~~~~~~~~pvIrLFGvT~~G~SV~v~V~gF~PYFYV~~p~~ 150 (1014)
..++|.||++| .++|...+|.|||+|+|.+++.+ +...+.+|+||+||+|.+|+|||||||||.|||||++|.+
T Consensus 56 ~~~~w~Rp~~p-~~~p~~~~i~fqq~~~e~y~~~~-----~~~~~~~pvvr~fGvT~~G~sv~~~v~gf~pyfYv~ap~g 129 (1066)
T KOG0969|consen 56 EHSRWARPALP-ALDPIKNDIEFQQIDIEFYVENG-----SGTSGSVPVVRLFGVTKEGNSVCCHVHGFFPYFYVEAPNG 129 (1066)
T ss_pred ccccccCCCCC-ccCcccccceEEEeehhhhccCC-----CcccCCCceEEEeeeccCCCeEEEEEecccceEEecCCCC
Confidence 34789999996 67999999999999999986532 2445678999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhhccCCCCCcceEEEEEEeecccccccCCCcccEEEEEEcChhhHHHHHHHHhcCccccCCC
Q 001780 151 MGPDDISHFHQILEGRMREANRNSKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVASCRGILDRGIQLDGLG 230 (1014)
Q Consensus 151 ~~~~~~~~~~~~L~~~l~~~~~~~~~~~~V~~Ie~V~K~sl~gy~~~~~~~flKI~~~~P~~v~klR~~le~g~~~~~l~ 230 (1014)
+.++++..+.+.|+..+.. ..+..+++|+|+++|||+++++.+|+||++++|.++.++|..|++|....+.+
T Consensus 130 ~~~e~i~~~~~~l~~~~~~--------~av~~ve~~~k~~l~~~~g~~k~~f~kit~~lP~~~~~~r~~lergv~~~~~~ 201 (1066)
T KOG0969|consen 130 FGPEHIGKFQQALDVKVTA--------HAVDHVEVVSKESLYGYQGDTKQPFLKITVTLPRMVAAARRLLERGVFISGKG 201 (1066)
T ss_pred CCHHHHHHHHHHHHHHHHH--------hHHHHHHHHhhhhhheecCCCCceeEEEecccHHHHHHhHHHHHhcccccccC
Confidence 9999999999999988764 25888999999999999999999999999999999999999999994444332
Q ss_pred C-ccceeeecccccceeeeeecCCcceeEEEEeccceeccccccccceeeeeeeccccccCCCCCCcCCCCCcEEEEEEE
Q 001780 231 M-KSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSYCQLEFDCLYSDIISRHPEGEFSKMAPFRILSFDI 309 (1014)
Q Consensus 231 ~-~~~~~yEanI~~~lRFmID~~I~G~~Wi~i~~~~~~~~~~k~S~C~~E~~v~~~~~~~~~~~~~~~~~pplrilSfDI 309 (1014)
. ..+++||+||+|.+|||+|++|.||+|+++|+++|..+..+.|.||+|+++.|+++++|+++|+|.++||+|+|||||
T Consensus 202 ~~~~~~~yEsNi~f~lrfmvd~~iVG~~wi~lp~gk~~~~~~~~s~cqlEv~v~y~~lishp~eG~w~~~APlrvlSfDI 281 (1066)
T KOG0969|consen 202 EKVGFTTYESNIDFVLRFMVDCDIVGMNWIELPAGKYRIRDNRVSRCQLEVSVNYKDLISHPAEGEWSKIAPLRVLSFDI 281 (1066)
T ss_pred cceeeeEecCCccEEEEEEecCccccceeEEeccchheeccchhcccceEEEEeecccccccccCcccccccccccceeE
Confidence 2 257899999999999999999999999999999998887799999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCceeEEEEEeeccCccccceeEEEeccccCCcCcceEeecCCHHHHHHHHHHHHHHhCCCEEEEec
Q 001780 310 ECAGRKGHFPEPTHDPVIQVANLVTLQGEKQPFIRNVMTLKSCAPIVGVDVMSFETERDVLLAWRDFIREVDPDVMIGYN 389 (1014)
Q Consensus 310 E~~~~~g~fP~~~~D~Ii~Is~~v~~~g~~~~~~~~vf~l~~~~~~~~~~V~~~~~E~eLL~~f~~~i~~~DPDIIiGyN 389 (1014)
||.+++|.||+|+.||||||++++...|+..||++++|+|++|++|.|++|.++.+|++||.+|.+||++.|||||+|||
T Consensus 282 ECagrkg~FPe~~~DPvIQIan~v~~~Ge~~pf~rnvf~l~~capI~G~~V~~~~~e~elL~~W~~firevDPDvI~GYN 361 (1066)
T KOG0969|consen 282 ECAGRKGVFPEAKIDPVIQIANLVTLQGENEPFVRNVFTLKTCAPIVGSNVHSYETEKELLESWRKFIREVDPDVIIGYN 361 (1066)
T ss_pred EeccCCCCCCccccChHHHHHHHHHHhcCCchHHHhhhcccCcCCCCCceeEEeccHHHHHHHHHHHHHhcCCCeEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccccc---------------------------------------------------------------------
Q 001780 390 ICKFDLPYLIE--------------------------------------------------------------------- 400 (1014)
Q Consensus 390 i~~FDlpyL~~--------------------------------------------------------------------- 400 (1014)
+.+||+|||++
T Consensus 362 i~nFDiPYll~RA~~L~Ie~Fp~LGRikn~~s~irDttfSSkq~GtRetK~v~I~GRlqfDllqvi~Rd~KLrSytLNaV 441 (1066)
T KOG0969|consen 362 ICNFDIPYLLNRAKTLGIENFPYLGRIKNSRSVIRDSTFSSKQYGTRETKEVNIDGRLQFDLLQVILRDYKLRSYTLNAV 441 (1066)
T ss_pred ccccccceecChHhhcCcccccccceecccceeeeccccchhhcCcccceEEeecceeeehHHHHHHHhhhhhhcchhhh
Confidence 99999999999
Q ss_pred --------cccccchhHHHhhcCChhhhhHHhhhhhccccchHHHHhhhhhhHhHHHHHHHhCcCcchhcccccHHHHHH
Q 001780 401 --------KEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLS 472 (1014)
Q Consensus 401 --------kedv~~~~i~~l~~~~~~~r~~l~~Y~lkDa~l~~~L~~kl~~~~~~~e~arv~g~p~~~vl~rG~~~~v~s 472 (1014)
||||||+.|+++|+|+.++|+|||.||||||+||+||+++||.+.||+|||||||+|++++++|||||||.|
T Consensus 442 s~hFL~EQKEDV~~siItdLQng~~~TRRRlA~YCLkDAYLPlRLlekLM~ivNy~EMARVTGVP~syLltRGqqIKVlS 521 (1066)
T KOG0969|consen 442 SAHFLGEQKEDVHHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLEKLMVIVNYTEMARVTGVPISYLLTRGQQIKVLS 521 (1066)
T ss_pred HHHhhhhhcccccccchhhhhcCcHHHHHHHHHHHhhhhcchHHHHHHHHHHHhHHhhhhhhCCcHHHHHhCCcchHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCccccCCCcCCCCCCcCCcceeeeccCceEEeeeEeeeccccchHHHHHhCCCcccccChhhhhccCCCCC
Q 001780 473 QLLRKAKQKNLVIPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTPEDARKLNLPPE 552 (1014)
Q Consensus 473 ~L~r~a~~~~~viP~~~~~~~~~~~yeGg~VleP~~G~y~~pV~~LDF~SLYPSIiia~Nlc~sT~~~~~~~~~~~~~~~ 552 (1014)
||+|+|+++++++|+.+.++++...||||+|+||.+|||+.||++|||+||||||||||||||||++.+++.++++ ++
T Consensus 522 qLlRkakq~~~~~P~i~~~~s~~e~yEGatVIEp~kGfY~~PIATLDFaSLYPSIMmahNLCYtTLl~~~t~~~l~--~~ 599 (1066)
T KOG0969|consen 522 QLLRKAKQKDFVIPNIKSQGSDDEQYEGATVIEPRKGFYDKPIATLDFASLYPSIMMAHNLCYTTLLTKETVEKLG--DE 599 (1066)
T ss_pred HHHHHHhhcCeeeeeecccCCccccccccEEeecccccCCCCceeeehhhhhhHHHHHhhhhheeccccchhhhcC--cc
Confidence 9999999999999999877665459999999999999999999999999999999999999999999999888876 78
Q ss_pred ceeeCCCCceeeecCCcCCCcHHHHHHHHHHHHHHHHHhhhcCChHHHHHhHHHhhhccccceecccccccccCCCCChH
Q 001780 553 CVNKTPSGETFVKSNLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIE 632 (1014)
Q Consensus 553 ~~~~~p~g~~fvk~~~~~Gilp~iL~~Ll~~R~~~K~~mk~~~d~~~~~~ld~rQ~AlKi~aNS~YG~~G~~~~r~~~~~ 632 (1014)
+|+.||+|++||+.++|+|+||+||++||.+||++|++||+++||+++++||+||+||||+|||+||||||+.|++||.+
T Consensus 600 ~~~~TP~g~yFv~~~~rkGlLP~ILe~ll~aRKraK~dlk~ekDp~kr~vldGRQLAlKisANSvYGFTGAtvGkLPCle 679 (1066)
T KOG0969|consen 600 DYTRTPTGDYFVKTEVRKGLLPEILEDLLTARKRAKADLKKEKDPFKRAVLDGRQLALKISANSVYGFTGATVGKLPCLE 679 (1066)
T ss_pred ceeECCCCCeeeehhhhccccHHHHHHHHHHHHHHHHHHHhccCHHHHhhhcchhhheeecccccccccccccCccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHhhHHHHHHHHHHHHhhccccCCccccceEEEecCccceEEcCCCCHHHHHHHHHHHHHHHHhcCCCceeEEEe
Q 001780 633 ISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFE 712 (1014)
Q Consensus 633 iA~sIT~~GR~~i~~t~~~ve~~~~~~~gy~~~~~VIYGDTDSv~V~~~~~~~~ea~~lg~eia~~vs~~~~~pi~Le~E 712 (1014)
|+.|||++||+||++|+.+||++|+++|||++++.|||||||||||+|+..++++||++|+|+|++|+..|++||+||||
T Consensus 680 IS~SVT~yGR~MI~~TK~~Ve~~y~~~ngy~~da~ViYGDTDSVMv~Fgv~~v~~am~lg~eaa~~vs~~F~~PIkLEFE 759 (1066)
T KOG0969|consen 680 ISQSVTAYGRQMIEKTKKLVEEKYTIKNGYSHDAVVIYGDTDSVMVKFGVSDVEEAMKLGREAAEYVSSKFVKPIKLEFE 759 (1066)
T ss_pred echhhHHHHHHHHHHHHHHHHHHhhhccCCccccEEEecCCceEEEecCchhHHHHHHHhHHHHHHHHhcCCCCceeEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccceecccceeEEEeccCCCCccceeEeeeeeccCchHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHcCCC
Q 001780 713 KVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYVKSTISDLLMNRM 792 (1014)
Q Consensus 713 kvy~~~ll~~KKRYagl~~~~~~~~~k~~~KGie~vRRD~~~l~k~~~~~vl~~il~~~d~~~a~~~v~~~i~~l~~~~v 792 (1014)
|||+|+||++||||||++|++|+.++++|.||+|+||||+|+||++++..+|+.||.++|+++|.++++++|++|+.|++
T Consensus 760 KvY~PYLLInKKRYAGL~~t~pd~~DkmD~kGietVRRDnc~LV~~v~~~~L~kiLi~rdv~gA~~fvk~~IsDlL~nri 839 (1066)
T KOG0969|consen 760 KVYFPYLLINKKRYAGLLWTNPDVFDKMDCKGIETVRRDNCPLVANVVNTVLRKILIERDVEGALAFVKDTISDLLCNRI 839 (1066)
T ss_pred eeecceEEeccceeeeeEeccCCcCccccccccchhccCCchHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceeEeecccCCcccccCcchHHHHHHHHHHhcCCCCCCCCCeeEEEEEecCCCCccccccCChhhhhccCCCcChhH
Q 001780 793 DLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHY 872 (1014)
Q Consensus 793 ~~~~lvi~k~l~k~~~~Y~~~~~hv~~A~r~~~rd~g~~p~~GdrV~YVi~~~~~~~~~~~ra~~p~~~~~~~~~iD~~y 872 (1014)
|++.|||+|+|+|..++|.+++|||++|+||++||+|++|..||||||||+.+++|+++|+|+|||.||++||+|||+.|
T Consensus 840 DiS~LVItK~Ltkagd~Y~~kqaHveLAermrkRD~gtaP~lGDRVpYVIi~~akg~~ay~rsEDP~fVLenNipiD~~y 919 (1066)
T KOG0969|consen 840 DISLLVITKELTKAGDDYAAKQAHVELAERMRKRDAGTAPNLGDRVPYVIIAAAKGAPAYERSEDPLYVLENNIPIDTRY 919 (1066)
T ss_pred ceeeeeeeehhcccccchhhhhhhHHHHHHhhhcCCCCCCccCCcCcEEEEecccCCchhcCCCCCeEEecCCCCcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchhhHHHhhccccccchhhhhcCCccceeeecCCCCcccccccccccccccccccccC--cccCCcCCCChHHHH
Q 001780 873 YLENQISKPLLRIFEPILKNASKELLSGDHTRSISISTPSNSGIMKFAKRQLSCIGCKALISN--GTLCSHCKGREAELY 950 (1014)
Q Consensus 873 Yi~~qi~~pl~ri~~~i~g~~~~~l~~g~~~r~~~~~~~~~~~~~~f~~~~~~C~~C~~~~~~--~~~C~~C~~~~~~~~ 950 (1014)
||++||.+||.|||+||+|+.+++++.|+|||.+.+.+++.||+|+|++++.+|++|+.++.. +++|.+|..+.+++|
T Consensus 920 YL~nQlsKPllrIfePILg~~~~~l~~g~htR~~~v~~~~~gGl~~F~kk~~tC~gCk~~~~~~~~~~C~~C~~r~~~ly 999 (1066)
T KOG0969|consen 920 YLENQLSKPLLRIFEPILGDAEKELLRGDHTRTITVTTSKVGGLMAFAKKVETCLGCKAPLRKGEQALCENCLPRSSELY 999 (1066)
T ss_pred HHhhhhhhhHHHHhhhhhCchhhccccccceeEEEeecccccchhhhhhhcccccccccccccccchhhhhhcccHHHHH
Confidence 999999999999999999998788999999999999999999999999999999999999876 579999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccccCCCCCcccccCCCCCcceeecchhhhHHHHHHhhccCC
Q 001780 951 CKTVSQVQELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKLQLDRWN 1013 (1014)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~c~~~~cp~~y~r~~~~~~~~~~~~~~~~~~ 1013 (1014)
++.+..++++|.+|+++|++||+||||+|++|+|+|+||||||||.|++++|+++.+.|+||+
T Consensus 1000 qk~v~~~~~lee~fsrlWt~Cqrcqgs~h~~vic~~rdCpifymr~kv~keL~~~~~~l~rf~ 1062 (1066)
T KOG0969|consen 1000 QKQVSHVNDLEEKFSRLWTECQRCQGSLHEEVICSNRDCPIFYMRQKVRKELQEQVDRLRRFG 1062 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhheeccCCCCchhhHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999996
|
|
| >PTZ00166 DNA polymerase delta catalytic subunit; Provisional | Back alignment and domain information |
|---|
| >KOG0968 consensus DNA polymerase zeta, catalytic subunit [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0970 consensus DNA polymerase alpha, catalytic subunit [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK05761 DNA polymerase I; Reviewed | Back alignment and domain information |
|---|
| >PRK05762 DNA polymerase II; Reviewed | Back alignment and domain information |
|---|
| >COG0417 PolB DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PHA03036 DNA polymerase; Provisional | Back alignment and domain information |
|---|
| >TIGR00592 pol2 DNA polymerase (pol2) | Back alignment and domain information |
|---|
| >PHA02528 43 DNA polymerase; Provisional | Back alignment and domain information |
|---|
| >cd05533 POLBc_delta DNA polymerase type-B delta subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd05534 POLBc_zeta DNA polymerase type-B zeta subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd05532 POLBc_alpha DNA polymerase type-B alpha subfamily catalytic domain | Back alignment and domain information |
|---|
| >PF00136 DNA_pol_B: DNA polymerase family B Several related DNA polymerases were too dissimilar to be included | Back alignment and domain information |
|---|
| >cd05536 POLBc_B3 DNA polymerase type-B B3 subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd05537 POLBc_Pol_II DNA polymerase type-II subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd05530 POLBc_B1 DNA polymerase type-B B1 subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd00145 POLBc DNA polymerase type-B family catalytic domain | Back alignment and domain information |
|---|
| >cd05538 POLBc_Pol_II_B DNA polymerase type-II B subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd05531 POLBc_B2 DNA polymerase type-B B2 subfamily catalytic domain | Back alignment and domain information |
|---|
| >PHA03334 putative DNA polymerase catalytic subunit; Provisional | Back alignment and domain information |
|---|
| >KOG1798 consensus DNA polymerase epsilon, catalytic subunit A [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >smart00486 POLBc DNA polymerase type-B family | Back alignment and domain information |
|---|
| >cd05535 POLBc_epsilon DNA polymerase type-B epsilon subfamily catalytic domain | Back alignment and domain information |
|---|
| >PHA02524 43A DNA polymerase subunit A; Provisional | Back alignment and domain information |
|---|
| >PF03104 DNA_pol_B_exo1: DNA polymerase family B, exonuclease domain Several related DNA polymerases were too dissimilar to be included | Back alignment and domain information |
|---|
| >TIGR00592 pol2 DNA polymerase (pol2) | Back alignment and domain information |
|---|
| >PHA02523 43B DNA polymerase subunit B; Provisional | Back alignment and domain information |
|---|
| >cd05777 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase | Back alignment and domain information |
|---|
| >cd05778 DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta, a family-B DNA polymerase | Back alignment and domain information |
|---|
| >cd05779 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase | Back alignment and domain information |
|---|
| >cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases | Back alignment and domain information |
|---|
| >PHA02563 DNA polymerase; Provisional | Back alignment and domain information |
|---|
| >cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases | Back alignment and domain information |
|---|
| >cd05783 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal family-B DNA polymerases | Back alignment and domain information |
|---|
| >cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases | Back alignment and domain information |
|---|
| >cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases | Back alignment and domain information |
|---|
| >cd05784 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases | Back alignment and domain information |
|---|
| >cd05776 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a family-B DNA polymerase | Back alignment and domain information |
|---|
| >PF14260 zf-C4pol: C4-type zinc-finger of DNA polymerase delta | Back alignment and domain information |
|---|
| >cd05782 DNA_polB_like1_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases | Back alignment and domain information |
|---|
| >PF10108 DNA_pol_B_exo2: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; InterPro: IPR019288 This entry represents various prokaryotic 3'-5' exonucleases and hypothetical proteins | Back alignment and domain information |
|---|
| >PF13482 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 2AJQ_F 1T8E_A 1T7P_A 1SKR_A 1X9W_A 1TK8_A 1TK0_A 1SL2_A | Back alignment and domain information |
|---|
| >PHA02735 putative DNA polymerase type B; Provisional | Back alignment and domain information |
|---|
| >PF08490 DUF1744: Domain of unknown function (DUF1744); InterPro: IPR013697 This domain is found on the catalytic subunit of DNA polymerase epsilon | Back alignment and domain information |
|---|
| >COG3359 Predicted exonuclease [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK06309 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >cd06125 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily | Back alignment and domain information |
|---|
| >TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family | Back alignment and domain information |
|---|
| >PRK06310 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases | Back alignment and domain information |
|---|
| >cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins | Back alignment and domain information |
|---|
| >cd06138 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain of Escherichia coli exonuclease I and similar proteins | Back alignment and domain information |
|---|
| >PRK09145 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK08517 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
| >PRK05711 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
| >cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III | Back alignment and domain information |
|---|
| >PF08996 zf-DNA_Pol: DNA Polymerase alpha zinc finger; InterPro: IPR015088 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >cd06135 Orn DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins | Back alignment and domain information |
|---|
| >cd06127 DEDDh DEDDh 3'-5' exonuclease domain family | Back alignment and domain information |
|---|
| >PRK07740 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK09146 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK07942 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
| >PRK05359 oligoribonuclease; Provisional | Back alignment and domain information |
|---|
| >PRK06807 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK06063 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
| >cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins | Back alignment and domain information |
|---|
| >PRK05168 ribonuclease T; Provisional | Back alignment and domain information |
|---|
| >PRK07247 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PF03175 DNA_pol_B_2: DNA polymerase type B, organellar and viral; InterPro: IPR004868 This entry is found in DNA polymerase type B proteins | Back alignment and domain information |
|---|
| >TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial | Back alignment and domain information |
|---|
| >PRK07883 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK11779 sbcB exonuclease I; Provisional | Back alignment and domain information |
|---|
| >TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type | Back alignment and domain information |
|---|
| >KOG1798 consensus DNA polymerase epsilon, catalytic subunit A [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T | Back alignment and domain information |
|---|
| >PRK06195 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK05601 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK09182 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >TIGR01298 RNaseT ribonuclease T | Back alignment and domain information |
|---|
| >PF00929 RNase_T: Exonuclease; InterPro: IPR013520 This entry includes a variety of exonuclease proteins, such as ribonuclease T [] and the epsilon subunit of DNA polymerase III | Back alignment and domain information |
|---|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
| >PRK07748 sporulation inhibitor KapD; Provisional | Back alignment and domain information |
|---|
| >cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins | Back alignment and domain information |
|---|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins | Back alignment and domain information |
|---|
| >TIGR03491 RecB family nuclease, putative, TM0106 family | Back alignment and domain information |
|---|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PHA03181 helicase-primase primase subunit; Provisional | Back alignment and domain information |
|---|
| >cd06149 ISG20 DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins | Back alignment and domain information |
|---|
| >cd06133 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins | Back alignment and domain information |
|---|
| >cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins | Back alignment and domain information |
|---|
| >PHA03144 helicase-primase primase subunit; Provisional | Back alignment and domain information |
|---|
| >PRK06722 exonuclease; Provisional | Back alignment and domain information |
|---|
| >COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG0847 DnaQ DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1014 | ||||
| 3iay_A | 919 | Ternary Complex Of Dna Polymerase Delta Length = 91 | 1e-155 | ||
| 2gv9_A | 1193 | Crystal Structure Of The Herpes Simplex Virus Type | 4e-44 | ||
| 2vwk_A | 773 | Uracil Recognition In Archaeal Dna Polymerases Capt | 7e-41 | ||
| 2xhb_A | 773 | Crystal Structure Of Dna Polymerase From Thermococc | 8e-41 | ||
| 2vwj_A | 773 | Uracil Recognition In Archaeal Dna Polymerases Capt | 8e-41 | ||
| 1tgo_A | 773 | Thermostable B Type Dna Polymerase From Thermococcu | 9e-41 | ||
| 1qht_A | 775 | Dna Polymerase From Thermococcus Sp. 9on-7 Archaeon | 1e-38 | ||
| 1wns_A | 774 | Crystal Structure Of Family B Dna Polymerase From H | 4e-37 | ||
| 1wn7_A | 774 | Crystal Structure Of Archaeal Family B Dna Polymera | 4e-37 | ||
| 2jgu_A | 775 | Crystal Structure Of Dna-directed Dna Polymerase Le | 1e-36 | ||
| 3a2f_A | 775 | Crystal Structure Of Pyrococcus Furiosus Dna Polyme | 1e-36 | ||
| 4ahc_A | 775 | Crystal Structure Of An Evolved Replicating Dna Pol | 5e-36 | ||
| 1qqc_A | 773 | Crystal Structure Of An Archaebacterial Dna Polymer | 7e-33 | ||
| 4fm2_A | 793 | Pyrococcus Abyssi B Family Dna Polymerase (Triple M | 1e-31 | ||
| 4flt_A | 793 | Pyrococcus Abyssi B Family Dna Polymerase Bound To | 2e-31 | ||
| 4fvm_A | 910 | Crystal Structure Of Yeast Dna Polymerase Alpha Len | 9e-29 | ||
| 4fyd_A | 910 | Crystal Structure Of Yeast Dna Polymerase Alpha Bou | 3e-28 | ||
| 4b08_A | 910 | Crystal Structure Of Yeast Dna Polymerase Alpha, Se | 1e-27 | ||
| 1d5a_A | 733 | Crystal Structure Of An Archaebacterial Dna Polymer | 2e-27 | ||
| 1q8i_A | 783 | Crystal Structure Of Escherichia Coli Dna Polymeras | 3e-25 | ||
| 3k5l_A | 786 | Crystal Structure Of E.Coli Pol Ii-Abasic Dna-Datp | 1e-24 | ||
| 1s5j_A | 847 | Insight In Dna Replication: The Crystal Structure O | 1e-15 | ||
| 3kd1_E | 913 | Closed Binary Complex Of An Rb69 Gp43 Fingers Domai | 5e-06 | ||
| 2dtu_A | 896 | Crystal Structure Of The Beta Hairpin Loop Deletion | 6e-04 | ||
| 3sq2_A | 902 | Rb69 Dna Polymerase Ternary Complex With Dttp Oppos | 6e-04 | ||
| 3cq8_A | 903 | Ternary Complex Of The L415f Mutant Rb69 Exo(-)poly | 6e-04 | ||
| 1ig9_A | 903 | Structure Of The Replicating Complex Of A Pol Alpha | 6e-04 | ||
| 3sq1_A | 901 | Rb69 Dna Polymerase Ternary Complex With Dupcpp Opp | 6e-04 | ||
| 1waf_A | 903 | Dna Polymerase From Bacteriophage Rb69 Length = 903 | 6e-04 | ||
| 3l8b_A | 906 | Crystal Structure Of A Replicative Dna Polymerase B | 6e-04 | ||
| 1q9y_A | 906 | Crystal Structure Of Enterobacteria Phage Rb69 Gp43 | 6e-04 | ||
| 2dy4_A | 903 | Crystal Structure Of Rb69 Gp43 In Complex With Dna | 7e-04 |
| >pdb|3IAY|A Chain A, Ternary Complex Of Dna Polymerase Delta Length = 919 | Back alignment and structure |
|
| >pdb|2GV9|A Chain A, Crystal Structure Of The Herpes Simplex Virus Type 1 Dna Polymerase Length = 1193 | Back alignment and structure |
| >pdb|2VWK|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By X-Ray Crystallography. V93q Polymerase Variant Length = 773 | Back alignment and structure |
| >pdb|2XHB|A Chain A, Crystal Structure Of Dna Polymerase From Thermococcus Gorgonarius In Complex With Hypoxanthine-Containing Dna Length = 773 | Back alignment and structure |
| >pdb|2VWJ|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By X-Ray Crystallography Length = 773 | Back alignment and structure |
| >pdb|1TGO|A Chain A, Thermostable B Type Dna Polymerase From Thermococcus Gorgonarius Length = 773 | Back alignment and structure |
| >pdb|1QHT|A Chain A, Dna Polymerase From Thermococcus Sp. 9on-7 Archaeon Length = 775 | Back alignment and structure |
| >pdb|1WNS|A Chain A, Crystal Structure Of Family B Dna Polymerase From Hyperthermophilic Archaeon Pyrococcus Kodakaraensis Kod1 Length = 774 | Back alignment and structure |
| >pdb|1WN7|A Chain A, Crystal Structure Of Archaeal Family B Dna Polymerase Mutant Length = 774 | Back alignment and structure |
| >pdb|2JGU|A Chain A, Crystal Structure Of Dna-directed Dna Polymerase Length = 775 | Back alignment and structure |
| >pdb|3A2F|A Chain A, Crystal Structure Of Pyrococcus Furiosus Dna PolymerasePCNA Monomer Mutant Complex Length = 775 | Back alignment and structure |
| >pdb|4AHC|A Chain A, Crystal Structure Of An Evolved Replicating Dna Polymerase Length = 775 | Back alignment and structure |
| >pdb|1QQC|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase D.Tok Length = 773 | Back alignment and structure |
| >pdb|4FM2|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase (Triple Mutant) Bound To A Dsdna, In Edition Mode Length = 793 | Back alignment and structure |
| >pdb|4FLT|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A Dsdna, In Edition Mode Length = 793 | Back alignment and structure |
| >pdb|4FVM|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha Length = 910 | Back alignment and structure |
| >pdb|4FYD|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To Dna/rna And Dgtp Length = 910 | Back alignment and structure |
| >pdb|4B08|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha, Selenomethionine Protein Length = 910 | Back alignment and structure |
| >pdb|1D5A|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase D.Tok. Deposition Of Second Native Structure At 2.4 Angstrom Length = 733 | Back alignment and structure |
| >pdb|1Q8I|A Chain A, Crystal Structure Of Escherichia Coli Dna Polymerase Ii Length = 783 | Back alignment and structure |
| >pdb|3K5L|A Chain A, Crystal Structure Of E.Coli Pol Ii-Abasic Dna-Datp Lt(0, 3) Ternary Complex Length = 786 | Back alignment and structure |
| >pdb|1S5J|A Chain A, Insight In Dna Replication: The Crystal Structure Of Dna Polymerase B1 From The Archaeon Sulfolobus Solfataricus Length = 847 | Back alignment and structure |
| >pdb|3KD1|E Chain E, Closed Binary Complex Of An Rb69 Gp43 Fingers Domain Mutant Complexed With An Acyclic Gmp Terminated Primer Template Pair. Length = 913 | Back alignment and structure |
| >pdb|2DTU|A Chain A, Crystal Structure Of The Beta Hairpin Loop Deletion Variant Of Rb69 Gp43 In Complex With Dna Containing An Abasic Site Analog Length = 896 | Back alignment and structure |
| >pdb|3SQ2|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dttp Opposite 2ap (At Rich Sequence) Length = 902 | Back alignment and structure |
| >pdb|3CQ8|A Chain A, Ternary Complex Of The L415f Mutant Rb69 Exo(-)polymerase Length = 903 | Back alignment and structure |
| >pdb|1IG9|A Chain A, Structure Of The Replicating Complex Of A Pol Alpha Family Dna Polymerase Length = 903 | Back alignment and structure |
| >pdb|3SQ1|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dupcpp Opposite Da Length = 901 | Back alignment and structure |
| >pdb|1WAF|A Chain A, Dna Polymerase From Bacteriophage Rb69 Length = 903 | Back alignment and structure |
| >pdb|3L8B|A Chain A, Crystal Structure Of A Replicative Dna Polymerase Bound To The Oxidized Guanine Lesion Guanidinohydantoin Length = 906 | Back alignment and structure |
| >pdb|1Q9Y|A Chain A, Crystal Structure Of Enterobacteria Phage Rb69 Gp43 Dna Polymerase Complexed With 8-Oxoguanosine Containing Dna Length = 906 | Back alignment and structure |
| >pdb|2DY4|A Chain A, Crystal Structure Of Rb69 Gp43 In Complex With Dna Containing Thymine Glycol Length = 903 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A Length = 775 | Back alignment and structure |
|---|
Score = 724 bits (1871), Expect = 0.0
Identities = 202/868 (23%), Positives = 335/868 (38%), Gaps = 135/868 (15%)
Query: 96 LDIDYVIGDSNRELLPLSSGSAAIIRIFGVTREGHSVCCKVHGFEPYFYISCPQGMGPDD 155
LD DY+ +IR+F G FEPYFY +D
Sbjct: 3 LDTDYIT-----------ENGKPVIRVFK-KENGEFKIEYDRTFEPYFYALLKDDSAIED 50
Query: 156 ISHFHQILEGRMREANRNSKVPQFVRHIEMVQKRSIMYYQQQKSQPFLKIVVALPTMVAS 215
+ G + V+ E VQK+ + K+ P V +
Sbjct: 51 VKKVTAKRHGTV----------VKVKRAEKVQKKF-----LGRPIEVWKLYFNHPQDVPA 95
Query: 216 CRGILDRGIQLDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKTLSY 275
R + + YE ++ FA R++ID ++ E
Sbjct: 96 IRDRIRAHPAV-------VDIYEYDIPFAKRYLIDKGLIPMEGDE--------------- 133
Query: 276 CQLEFDCLYSDIISRHPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTL 335
E L I + + EGE P ++S+ R + + V V+
Sbjct: 134 ---ELTMLAFAIATLYHEGEEFGTGPILMISYADGSEARVITWKKIDLPYVDVVST---- 186
Query: 336 QGEKQPFIRNVMTLKSCAP--IVGVDVMSFE----TER-DVLLAWRDFIREVDPD----- 383
EK+ R + ++ P ++ + +F+ +R + L R+
Sbjct: 187 --EKEMIKRFLRVVREKDPDVLITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRM 244
Query: 384 -----------VMI-GYNICK-------FDLPYL------IEKEDVHHSIISDLQNGNAE 418
+ Y + + + L + KE V+ I+ + E
Sbjct: 245 GDRFAVEVKGRIHFDLYPVIRRTINLPTYTLEAVYEAVFGKPKEKVYAEEIAQAWE-SGE 303
Query: 419 TRRRLAVYCLKDAYLPQRLLDKLMFIFNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKA 478
R+A Y ++DA + L + + +++R+ G + + V LLRKA
Sbjct: 304 GLERVARYSMEDAKVTYELGREFFPM--EAQLSRLIGQSLWDVSRSSTGNLVEWFLLRKA 361
Query: 479 KQKNLVIPN---VKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCY 535
++N + PN ++ +G Y G V E G ++ I LDF SLYPSI++ +N+
Sbjct: 362 YKRNELAPNKPDERELARRRGGYAGGYVKEPERGLWD-NIVYLDFRSLYPSIIITHNVSP 420
Query: 536 STLVTPEDARKLNLPPECVNKTPSGETFVKSNLQKGILPEILEELLAARKRAKADLKEAK 595
TL E G F K G +P +L +LL R++ K +K
Sbjct: 421 DTLNREGC-------KEYDVAPEVGHKFCKD--FPGFIPSLLGDLLEERQKIKRKMKATV 471
Query: 596 DPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDK 655
DPLEK +LD RQ A+KI ANS YG+ G + C E + SVT++GR+ IE + +E+K
Sbjct: 472 DPLEKKLLDYRQRAIKILANSFYGYYGYAKARWYCKECAESVTAWGREYIEMVIRELEEK 531
Query: 656 FTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTFIKPIKLEFEKVY 715
F +V+Y DTD + E K +E YI+ ++LE+E Y
Sbjct: 532 F--------GFKVLYADTDGLHATIPGADAETVKKKAKEFLKYINPKLPGLLELEYEGFY 583
Query: 716 YPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPG 775
++KK+YA + ++ K+ T+G+E VRRD + K L IL D+
Sbjct: 584 VRGFFVTKKKYAVI-----DEEGKITTRGLEIVRRDWSEIAKETQARVLEAILKHGDVEE 638
Query: 776 AVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVG 835
AV+ VK L + LVI + +T+ DY+ HV +A+R+ R P G
Sbjct: 639 AVRIVKEVTEKLSKYEVPPEKLVIHEQITRDLRDYKATGPHVAVAKRLAARGVKIRP--G 696
Query: 836 DRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQISKPLLRIFEPILKNASK 895
+ Y+++K + +R+ D YY+ENQ+ + RI + K
Sbjct: 697 TVISYIVLKG--SGRIGDRAIPADEFDPTKHRYDAEYYIENQVLPAVERILKAF--GYRK 752
Query: 896 ELLSGDHTRSISISTPSNSGIMKFAKRQ 923
E L T+ + + +K ++
Sbjct: 753 EDLRYQKTKQVGL-----GAWLKVKGKK 775
|
| >1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1 Length = 847 | Back alignment and structure |
|---|
| >3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} Length = 919 | Back alignment and structure |
|---|
| >3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} Length = 919 | Back alignment and structure |
|---|
| >3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A* Length = 786 | Back alignment and structure |
|---|
| >2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B* Length = 1193 | Back alignment and structure |
|---|
| >2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B* Length = 1193 | Back alignment and structure |
|---|
| >3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 3spz_A* 3ne6_A* 3nhg_A* 3si6_A* 3scx_A* 3sjj_A* 3snn_A* 3ngi_A* 3lzi_A* 3lzj_A* 3ndk_A* ... Length = 903 | Back alignment and structure |
|---|
| >3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 3spz_A* 3ne6_A* 3nhg_A* 3si6_A* 3scx_A* 3sjj_A* 3snn_A* 3ngi_A* 3lzi_A* 3lzj_A* 3ndk_A* ... Length = 903 | Back alignment and structure |
|---|
| >1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A* Length = 388 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A* Length = 575 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1014 | ||||
| d1tgoa2 | 426 | e.8.1.1 (A:348-773) Family B DNA polymerase {Archa | 1e-85 | |
| d1s5ja2 | 415 | e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfo | 7e-65 | |
| d1q8ia2 | 394 | e.8.1.1 (A:390-783) Family B DNA polymerase {Esche | 1e-60 | |
| d1s5ja1 | 410 | c.55.3.5 (A:40-449) Exonuclease domain of family B | 3e-47 | |
| d1ih7a2 | 528 | e.8.1.1 (A:376-903) Family B DNA polymerase {Bacte | 8e-47 | |
| d2py5a2 | 388 | e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacterio | 5e-35 | |
| d1q8ia1 | 388 | c.55.3.5 (A:2-389) Exonuclease domain of family B | 7e-35 | |
| d1tgoa1 | 347 | c.55.3.5 (A:1-347) Exonuclease domain of family B | 5e-34 | |
| d1noya_ | 372 | c.55.3.5 (A:) Exonuclease domain of family B DNA p | 8e-18 | |
| d1ih7a1 | 375 | c.55.3.5 (A:1-375) Exonuclease domain of family B | 3e-16 |
| >d1tgoa2 e.8.1.1 (A:348-773) Family B DNA polymerase {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Length = 426 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: Family B DNA polymerase species: Archaeon Thermococcus gorgonarius [TaxId: 71997]
Score = 280 bits (717), Expect = 1e-85
Identities = 138/450 (30%), Positives = 206/450 (45%), Gaps = 34/450 (7%)
Query: 463 SRGQSIKVLSQLLRKAKQKNLVIPN---VKQAGSEQGTYEGATVLEARAGFYEKPIATLD 519
S G ++ LLRKA ++N + PN ++ + +Y G V E G +E I LD
Sbjct: 1 STGNLVEWF--LLRKAYERNELAPNKPDERELARRRESYAGGYVKEPERGLWE-NIVYLD 57
Query: 520 FASLYPSIMMAYNLCYSTLVTPEDARKLNLPPECVNKTPSGETFVKSNLQKGILPEILEE 579
F SLYPSI++ +N+ TL E G F K G +P +L +
Sbjct: 58 FRSLYPSIIITHNVSPDTLNREG-------CEEYDVAPQVGHKFCKD--FPGFIPSLLGD 108
Query: 580 LLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTS 639
LL R++ K +K DP+EK +LD RQ A+KI ANS YG+ G + C E + SVT+
Sbjct: 109 LLEERQKVKKKMKATIDPIEKKLLDYRQRAIKILANSFYGYYGYAKARWYCKECAESVTA 168
Query: 640 YGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYI 699
+GRQ IE T + +E+KF +V+Y DTD E K +E DYI
Sbjct: 169 WGRQYIETTIREIEEKF--------GFKVLYADTDGFFATIPGADAETVKKKAKEFLDYI 220
Query: 700 SGTFIKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNL 759
+ ++LE+E Y ++KK+YA + DK+ T+G+E VRRD + K
Sbjct: 221 NAKLPGLLELEYEGFYKRGFFVTKKKYAVIDE-----EDKITTRGLEIVRRDWSEIAKET 275
Query: 760 VTECLHKILVDRDIPGAVQYVKSTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVEL 819
L IL D+ AV+ VK L + LVI + +T+ DY+ HV +
Sbjct: 276 QARVLEAILKHGDVEEAVRIVKEVTEKLSKYEVPPEKLVIYEQITRDLKDYKATGPHVAV 335
Query: 820 AERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDTHYYLENQIS 879
A+R+ R G + Y+++K + +R+ D YY+ENQ+
Sbjct: 336 AKRLAARG--IKIRPGTVISYIVLK--GSGRIGDRAIPFDEFDPAKHKYDAEYYIENQVL 391
Query: 880 KPLLRIFEPILKNASKELLSGDHTRSISIS 909
+ RI KE L TR + +
Sbjct: 392 PAVERILRAF--GYRKEDLRYQKTRQVGLG 419
|
| >d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus solfataricus [TaxId: 2287]} Length = 415 | Back information, alignment and structure |
|---|
| >d1q8ia2 e.8.1.1 (A:390-783) Family B DNA polymerase {Escherichia coli [TaxId: 562]} Length = 394 | Back information, alignment and structure |
|---|
| >d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]} Length = 410 | Back information, alignment and structure |
|---|
| >d1ih7a2 e.8.1.1 (A:376-903) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]} Length = 528 | Back information, alignment and structure |
|---|
| >d2py5a2 e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 10756]} Length = 388 | Back information, alignment and structure |
|---|
| >d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]} Length = 388 | Back information, alignment and structure |
|---|
| >d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Length = 347 | Back information, alignment and structure |
|---|
| >d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA polymerases {Bacteriophage T4 [TaxId: 10665]} Length = 372 | Back information, alignment and structure |
|---|
| >d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]} Length = 375 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1014 | |||
| d1tgoa2 | 426 | Family B DNA polymerase {Archaeon Thermococcus gor | 100.0 | |
| d1s5ja2 | 415 | Family B DNA polymerase {Sulfolobus solfataricus [ | 100.0 | |
| d1q8ia2 | 394 | Family B DNA polymerase {Escherichia coli [TaxId: | 100.0 | |
| d1ih7a2 | 528 | Family B DNA polymerase {Bacteriophage RB69 [TaxId | 100.0 | |
| d1s5ja1 | 410 | Exonuclease domain of family B DNA polymerases {Su | 100.0 | |
| d1q8ia1 | 388 | Exonuclease domain of family B DNA polymerases {Es | 100.0 | |
| d1tgoa1 | 347 | Exonuclease domain of family B DNA polymerases {Ar | 100.0 | |
| d1ih7a1 | 375 | Exonuclease domain of family B DNA polymerases {Ba | 100.0 | |
| d1noya_ | 372 | Exonuclease domain of family B DNA polymerases {Ba | 100.0 | |
| d2py5a2 | 388 | phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: | 100.0 | |
| d1x9ma1 | 204 | Exonuclease domain of T7 DNA polymerase {Bacteriop | 99.35 | |
| d2qxfa1 | 467 | Exonuclease I {Escherichia coli K12 (Escherichia c | 96.98 | |
| d1wlja_ | 173 | Interferon-stimulated gene 20 kDa protein, ISG20 { | 96.89 | |
| d3b6oa1 | 226 | Three prime repair exonuclease 1, TREX1 {Mouse (Mu | 95.95 | |
| d2guia1 | 174 | N-terminal exonuclease domain of the epsilon subun | 95.65 | |
| d1w0ha_ | 200 | Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 960 | 94.29 | |
| d2igia1 | 180 | Oligoribonuclease {Escherichia coli [TaxId: 562]} | 93.52 | |
| d1y97a1 | 228 | Three prime repair exonuclease 2, TREX2 {Human (Ho | 92.09 | |
| d1kfsa1 | 195 | Exonuclease domain of prokaryotic DNA polymerase { | 90.12 |
| >d1tgoa2 e.8.1.1 (A:348-773) Family B DNA polymerase {Archaeon Thermococcus gorgonarius [TaxId: 71997]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: Family B DNA polymerase species: Archaeon Thermococcus gorgonarius [TaxId: 71997]
Probab=100.00 E-value=0 Score=732.68 Aligned_cols=416 Identities=33% Similarity=0.482 Sum_probs=375.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCC---CCCCCCCCCCEEEECCCCEEEEEEEEEECCCCCHHHHHHHCCCCCCCCCHHHH
Q ss_conf 889999999976559345687767---99777687614631367137700476322541367898718884456691322
Q 001780 468 IKVLSQLLRKAKQKNLVIPNVKQA---GSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYSTLVTPEDA 544 (1014)
Q Consensus 468 ~kv~s~L~r~a~~~~~iiP~~~~~---~~~~~~yeGg~VleP~~G~y~~pV~~LDF~SLYPSIiia~Nlc~tTl~~~~~~ 544 (1014)
..|+++|+|+|+++|+++|++... .+...+|+||+|++|++|+|++ |++|||+|||||||++|||||+|++...
T Consensus 4 ~~ve~~~~~~~~~~~~~~p~~~~~~~~~~~~~~y~Gg~V~~p~~G~~~~-v~~lDf~SLYPsii~~~Ni~p~T~~~~~-- 80 (426)
T d1tgoa2 4 NLVEWFLLRKAYERNELAPNKPDERELARRRESYAGGYVKEPERGLWEN-IVYLDFRSLYPSIIITHNVSPDTLNREG-- 80 (426)
T ss_dssp HHHHHHHHHHHHHTTBCCCCCCCHHHHHHCCCCCCCCCEECCCCSEEEE-EEEEEESSHHHHHHHHTTCSTTTBTCTT--
T ss_pred HHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCC-EEEEECCCHHHHHHHHHCCCHHHCCCCC--
T ss_conf 8999999999987899933698641002555686883675689976788-5788843502999999688965568878--
Q ss_pred HCCCCCCCCEEECC-CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEECCCCCCC
Q ss_conf 00699999622189-98324321776788289999999999999998631699578997678753213320000243245
Q 001780 545 RKLNLPPECVNKTP-SGETFVKSNLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGA 623 (1014)
Q Consensus 545 ~~~~~~~~~~~~~p-~g~~fvk~~~~~Gilp~iL~~Ll~~R~~~K~~mk~~~d~~~~~~ld~rQ~AlKi~aNS~YG~~G~ 623 (1014)
.+++...| +|..|++ .++||+|++|++|++.|+++|+.||..+|+.++++||.+|+|+|+++||+|||+|+
T Consensus 81 ------~~~~~~~~~~g~~~~~--~~~Gilp~~l~~l~~~R~~~K~~~k~~~~~~~~~~~d~~Q~a~Ki~~NS~YG~~G~ 152 (426)
T d1tgoa2 81 ------CEEYDVAPQVGHKFCK--DFPGFIPSLLGDLLEERQKVKKKMKATIDPIEKKLLDYRQRAIKILANSFYGYYGY 152 (426)
T ss_dssp ------CSSEEECTTTCCEEEC--SSCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTHHHHHHC
T ss_pred ------CCCCCCCCCCCCEEEC--CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf ------5313447888835763--68871699999999999986552021010588888988999999866478888752
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 55788986778649895599999999999825024688655624787057640288078889999999999999998517
Q 001780 624 TVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAADYISGTF 703 (1014)
Q Consensus 624 ~~~r~~~~~iA~sIT~~GR~~l~~t~~~ve~~~~~~~g~~~~~~VIYGDTDSvfV~~~~~~~~ea~~lg~eia~~vs~~~ 703 (1014)
+++||||.++|++||++||++|..+++.+++.+ |++||||||||+||.++..+.+++.++++++++.|+..+
T Consensus 153 ~~~~~~~~~~A~~iT~~GR~~i~~~~~~i~~~~--------g~~ViYgDTDSi~v~~~~~~~~~~~~~~~~~~~~i~~~~ 224 (426)
T d1tgoa2 153 AKARWYCKECAESVTAWGRQYIETTIREIEEKF--------GFKVLYADTDGFFATIPGADAETVKKKAKEFLDYINAKL 224 (426)
T ss_dssp TTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTT--------CCEEEEEESSEEEEECTTCCHHHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 410000011224347999999999999999971--------982366205616885387226788999999999999875
Q ss_pred CCCEEEEEEEEECCCEECCCCEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 88256889565301010243206898425998765136753052047527999999999999882179935599999999
Q 001780 704 IKPIKLEFEKVYYPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDIPGAVQYVKST 783 (1014)
Q Consensus 704 ~~pi~Le~Ekvy~~~ll~~KKRYagl~~~~~~~~~k~~~KGie~vRRD~c~l~k~v~~~vl~~il~~~d~~~~~~~v~~~ 783 (1014)
+.|++||||++|.++++++||||+|+. ..+++++||+|++|||+|+++|+++.++|+.||.++|++++.+++++.
T Consensus 225 ~~~i~le~E~iy~~~l~~~KKrY~~~~-----~~~k~~~kGie~~Rrd~~~~~k~~~~~vl~~il~~~d~~~~~~~i~~~ 299 (426)
T d1tgoa2 225 PGLLELEYEGFYKRGFFVTKKKYAVID-----EEDKITTRGLEIVRRDWSEIAKETQARVLEAILKHGDVEEAVRIVKEV 299 (426)
T ss_dssp CTTCCEEEEEEEEEEEEEETTEEEEEC-----TTCCEEEESCSCCSSCBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHEEEEEEECCEECCCCEEEEE-----CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 044553000254102032256445652-----478753201332278874468999999999885268611146789999
Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHC
Q ss_conf 99998199892233576325679332257650899999988835899999999358999955999754334478153301
Q 001780 784 ISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLE 863 (1014)
Q Consensus 784 i~~l~~~~v~~~~lvi~k~l~k~~~~Y~~~~phv~~A~rl~~rd~g~~p~~GdrI~YVi~~~~~~~~~~~rae~p~~~~~ 863 (1014)
+.+|.+|++|+++|++++++++.+++|+..+||+.+|+||.++ |..+.+||||+|||+++++ +..+++++|.++.+
T Consensus 300 ~~~l~~~~~~~edl~i~~~l~k~~~~Yk~~~phv~~a~rl~~~--g~~i~~GdrI~Yvivk~~~--~~~d~~~~~~~~~~ 375 (426)
T d1tgoa2 300 TEKLSKYEVPPEKLVIYEQITRDLKDYKATGPHVAVAKRLAAR--GIKIRPGTVISYIVLKGSG--RIGDRAIPFDEFDP 375 (426)
T ss_dssp HHHHHTTCSCGGGSCEEEECSSCGGGSCSSSSHHHHHHHHHHH--TCCCCTTSEEEEEEBCCSS--STTCCEEEGGGCCT
T ss_pred HHHHHCCCCCHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHC--CCCCCCCCEEEEEEEECCC--CCCCEEECHHHHCC
T ss_conf 9998627989899744354226722204557089999999862--9999999988999980898--65551446777075
Q ss_pred CCCCCCHHHHHHHCCHHHHHHHHCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 6988674687741031568886400366524535029863225314898844321100
Q 001780 864 NNIPIDTHYYLENQISKPLLRIFEPILKNASKELLSGDHTRSISISTPSNSGIMKFAK 921 (1014)
Q Consensus 864 ~~~~iD~~yYi~~qi~~pl~ri~~~i~g~~~~~l~~g~~~r~~~~~~~~~~~~~~f~~ 921 (1014)
++.+||++||+++||++||.|||+++ |.+.+.+.. .+ ..+.+|..|..
T Consensus 376 ~~~~iD~~yYiekqi~~pl~~il~~~-g~~~e~l~~-~~--------~kq~~L~~f~~ 423 (426)
T d1tgoa2 376 AKHKYDAEYYIENQVLPAVERILRAF-GYRKEDLRY-QK--------TRQVGLGAWLK 423 (426)
T ss_dssp TTCCBCHHHHHHHTTGGGTHHHHHTT-TCCGGGSSC-SS--------SCCCCCTTSSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHC-CCCHHHHCC-CC--------CCCCCHHHHCC
T ss_conf 67998889999998799999998660-999899544-78--------87534999648
|
| >d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1q8ia2 e.8.1.1 (A:390-783) Family B DNA polymerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ih7a2 e.8.1.1 (A:376-903) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]} | Back information, alignment and structure |
|---|
| >d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]} | Back information, alignment and structure |
|---|
| >d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]} | Back information, alignment and structure |
|---|
| >d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA polymerases {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
| >d2py5a2 e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 10756]} | Back information, alignment and structure |
|---|
| >d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
| >d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]} | Back information, alignment and structure |
|---|
| >d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2igia1 c.55.3.5 (A:1-180) Oligoribonuclease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|