Citrus Sinensis ID: 001796

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010--

MALELIPIGTILAVLTNQVIKTAQAAKNVVYEKESFKVLSKHLFDIESVLKELQLQKLNDSQAVRLALESLEADVEKANNLVEKYKNKSRFYLLVKCRYIVNEIQEVTRNIGRSLASLSLANTEVLSEISDQMNRLQNEMQRVEFKASQSQIVDKLNQGLRDQKLDQGFANDMLEEIARAVGVPVEPSEISKELASFRREKEEAANRKERAEVLFLDQVIELLSRADAARDYEEVKKQYFQRLQIIERYDSRENYIQPLNAFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDRREKTDPETGVVLEDTSLRSNSPLRQSIEEWKELNYCLNIRCCRAKLLSGIDSSELEALDQMQDLMRESSINKDWISIGGITDIIISILGSSHNKDVKMKILITLKQLVKGHARNKEKVIDYGGWDHIVPCLGRDPSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTWGTDSLKEEALGFLEKVFMSKEMVDTYGSSARLLLVPLTSRNVHEDGSLERKAAKVLSLIERYSRSSTSLIPGLFG

cccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHccccHHHEHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHcccccccHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccccc

ccEEEccHHHHHHHHHHHHHHHHHHccccEEEHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHHHHHHHHcccHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcHHccccccccccccccccccccccccccccccHHccccccHHHccccEEEEccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHccHcccHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHcccHcHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHHHHHHHccccEEEcccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEccccccEEEEEccccHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcHccHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccc

MALELIPIGTILAVLTNQVIKTAQAAKNVVYEKESFKVLSKHLFDIESVLKELQLQKLNDSQAVRLALESLEADVEKANNLVEKYKNKSRFYLLVKCRYIVNEIQEVTRNIGRSLASLSLANTEVLSEISDQMNRLQNEMQRVEFKASQSQIVDKLNQGLRDQKLDQGFANDMLEEIARavgvpvepseISKELASFRREKEEAANRKERAEVLFLDQVIELLSRADAARDYEEVKKQYFQRLQIIERydsrenyiqplNAFKCritgtvmmdpvslytgttcERAAIEAWLDRrektdpetgvvledtslrsnsplRQSIEEWKELNYCLNIRCCRAKLlsgidsseLEALDQMQDLMREssinkdwisiggITDIIISILGSSHNKDVKMKILITLKQLVKGHarnkekvidyggwdhivpclgrdpsiSLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLikgpvresAECAEKILQQLFDVDEENFCRaaksgwykpLIDRIIQGAESSRILMMKALLSMELVDSNLEllgkegiippllglvgsgnfqskeLSLSVLVKLSgcsknrelisaaggiPQVLELMFsshvpsniIVKCSEILEKLSSDGIKFLvdekgnrlelePIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLfshhepegvveylLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALfrftdptnleaqrnvveRGVYPLLVNLLQIGSITAKARAAALIGTlstsspkftdmpesagcwcfrpsrahlcqvhggicsesTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTWGTDSLKEEALGFLEKVFMSKEMVDTYGSSARLLLVpltsrnvhedgslERKAAKVLSLIERYsrsstslipglfg

MALELIPIGTILAVLTNQVIKTAQAAKNVVYEKESFKVLSKHLFDIESVLKELQLQKLNDSQAVRLALESLEADVEKANNLvekyknksrfyLLVKCRYIVNEIQEVTRNIGRSLASLSLANTEVLSEISDQMNRLQNEMQRVEFKASQSQIVDKLNQGLRDQKLDQGFANDMLEEIAravgvpvepseiSKELASFRREKEeaanrkeraevlfldQVIELLSRADAARDYEEVKKQYFQRLQIIerydsrenyiQPLNAFKCRITGTVMMDPVSLYTGTTCERAAIEAWldrrektdpetgvvledtslrsnsplRQSIEEWKELNYCLNIRCCRAKLLSGIDSSELEALDQMQDLMRESsinkdwisiGGITDIIISILGSSHNKDVKMKILITLKQLVKGHARNKEKVIDYGGWDHIVPCLGRDPSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAaksgwykpliDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLstsspkftdMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTWGTDSLKEEALGFLEKVFMSKEMVDTYGSSARLLLVPLtsrnvhedgslerKAAKVLSLIerysrsstslipglfg

MALELIPIGTILAVLTNQVIKTAQAAKNVVYEKESFKVLSKHLFDIESVLKELQLQKLNDSQAVRLALESLEADVEKANNLVEKYKNKSRFYLLVKCRYIVNEIQEVTRNIGRSLASLSLANTEVLSEISDQMNRLQNEMQRVEFKASQSQIVDKLNQGLRDQKLDQGFANDMLEEIARAVGVPVEPSEISKELASFrrekeeaanrkeraeVLFLDQVIELLSRADAARDYEEVKKQYFQRLQIIERYDSRENYIQPLNAFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDRREKTDPETGVVLEDTSLRSNSPLRQSIEEWKELNYCLNIRCCRAKLLSGIDSSELEALDQMQDLMRESSINKDWisiggitdiiisilgssHNKDVKMKILITLKQLVKGHARNKEKVIDYGGWDHIVPCLGRDPSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQskelslsvlvklsGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVslilsllddtdsEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTWGTDSLKEEALGFLEKVFMSKEMVDTYGSSARLLLVPLTSRNVHEDGSLERKAAKVLSLIERYSRSSTSLIPGLFG

***ELIPIGTILAVLTNQVIKTAQAAKNVVYEKESFKVLSKHLFDIESVLKELQLQKLNDSQAVRLALESLEADVEKANNLVEKYKNKSRFYLLVKCRYIVNEIQEVTRNIGRSLASLSLANT****************************************************************************************EVLFLDQVIELLSRADAARDYEEVKKQYFQRLQIIERYDSRENYIQPLNAFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDR**************************IEEWKELNYCLNIRCCRAKLLSGIDSS*L************SSINKDWISIGGITDIIISILGSSHNKDVKMKILITLKQLVKGHARNKEKVIDYGGWDHIVPCLGRDPSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLST****FTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTWGTDSLKEEALGFLEKVFMSKEMVDTYGSSARLLLVPLTSRNV************VLSLI****************

*****IPIGTILAVLTNQVIKTAQAAKNVVYEKESFKVLSKHLFDIESVLKELQ***********LALESLEADVEKANNLVEKYKNKSRFYLLVKCRYIVNEIQEVTRNIGRSLASLSLANTEVLSEISDQMNRLQNEMQRVE********************************IARAVGVPVEPSEISKEL**********************DQVIELLSRADA******************************LNAFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDRREKTDPETGVVLEDTSLRSNSPLRQSIEEWKELNYC**************************************************************KILITLKQLVKGHARNKEKVIDYGGWDHIVPCLGRDPSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLEN**KHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIIN*************LSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTS**************CFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTWGTDSLKEEALGFLEKVFMSKEMVD***SSARLLLVP****************AKVLSLIERY*****SLIPGLFG

MALELIPIGTILAVLTNQVIKTAQAAKNVVYEKESFKVLSKHLFDIESVLKELQLQKLNDSQAVRLALESLEADVEKANNLVEKYKNKSRFYLLVKCRYIVNEIQEVTRNIGRSLASLSLANTEVLSEISDQMNRLQNEMQRVEFKASQSQIVDKLNQGLRDQKLDQGFANDMLEEIARAVGVPVEPSEISKELASF**********KERAEVLFLDQVIELLSRADAARDYEEVKKQYFQRLQIIERYDSRENYIQPLNAFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDRREKTDPETGVVLEDTSLRSNSPLRQSIEEWKELNYCLNIRCCRAKLLSGIDSSELEALDQMQDLMRESSINKDWISIGGITDIIISILGSSHNKDVKMKILITLKQLVKGHARNKEKVIDYGGWDHIVPCLGRDPSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTWGTDSLKEEALGFLEKVFMSKEMVDTYGSSARLLLVPLTSRNVHEDGSLERKAAKVLSLIERYSRSSTSLIPGLFG

*ALELIPIGTILAVLTNQVIKTAQAAKNVVYEKESFKVLSKHLFDIESVLKELQLQKLNDSQAVRLALESLEADVEKANNLVEKYKNKSRFYLLVKCRYIVNEIQEVTRNIGRSLASLSLANTEVLSEISDQMNRLQNEMQRVEFKASQSQIVDKLNQGLRDQKLDQGFANDMLEEIARAVGVPVEPSEISKELASFRREKEEAANRKERAEVLFLDQVIELLSRADAAR***********************NYIQPLNAFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDRREKTDPETGVVLEDTSLRSNSPLRQSIEEWKELNYCLNIRCCRAKLLSGIDSSELEALDQMQDLMRESSINKDWISIGGITDIIISILGSSHNKDVKMKILITLKQLVKGHARNKEKVIDYGGWDHIVPCLGRDPSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTWGTDSLKEEALGFLEKVFMSKEMVDTYGSSARLLLVPLTSRNVHEDGSLERKAAKVLSLIERYSRSSTSLIPGLFG

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MALELIPIGTILAVLTNQVIKTAQAAKNVVYEKESFKVLSKHLFDIESVLKELQLQKLNDxxxxxxxxxxxxxxxxxxxxxxxxxxxxSRFYLLVKCRYIVNEIQEVTRNIGRSLASLSLANTEVxxxxxxxxxxxxxxxxxxxxxASQSQIVDKLNQGLRDQKLDQGFANDMLEEIARAVGVPVEPSEISKExxxxxxxxxxxxxxxxxxxxxFLDQVIELLSRADAARDYEEVKKQYFQRLQIIERYDSRENYIQPLNAFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDRREKTDPETGVVLEDTSLRSNSPLRQSIEEWKELNYCLNIRCCRAKLLSGIDSSELEALDQMQDLMRESSINKDWISIGGITDIIISILGSSHNKDVKMKILITLKQLVKGHARNKEKVIDYGGWDHIVPCLGRDPSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTWGTDSLKEEALGFLEKVFMSKEMVDTYGSSARLLLVPLTSRNVHEDGSLERKAAKVLSLIERYSRSSTSLIPGLFG

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1012	2.2.26 [Sep-21-2011]
Q9CAA7		1033	Putative U-box domain-con	yes	no	0.906	0.887	0.239	3e-41
Q9SFX2		811	U-box domain-containing p	no	no	0.687	0.858	0.270	6e-37
Q9LM76		801	U-box domain-containing p	no	no	0.691	0.873	0.266	4e-35
Q5XEZ8		707	U-box domain-containing p	no	no	0.509	0.729	0.229	4e-14
Q8GWV5		760	U-box domain-containing p	no	no	0.267	0.356	0.238	1e-10
Q5VRH9		611	U-box domain-containing p	no	no	0.475	0.787	0.209	2e-10
O22193		826	U-box domain-containing p	no	no	0.237	0.290	0.262	4e-10
Q9SNC6		660	U-box domain-containing p	no	no	0.465	0.713	0.210	3e-09
Q8VZ40		632	U-box domain-containing p	no	no	0.493	0.789	0.209	2e-07
Q8GUG9		612	U-box domain-containing p	no	no	0.227	0.375	0.263	2e-07

>sp\|Q9CAA7\|PUB42_ARATH Putative U-box domain-containing protein 42 OS=Arabidopsis thaliana GN=PUB42 PE=2 SV=1	Back alignment and function desciption

 Score =  171 bits (432), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 248/1034 (23%), Positives = 441/1034 (42%), Gaps = 117/1034 (11%)

Query: 68   LESLEADVEKANNLVEKYKNKSRFYLLVKCRYIVNEIQEVTRNIGRSLASLSLANTEVLS 127
             ESL   V+ A  LVEK +  +        R I    + V + +G +L S+  +  +   
Sbjct: 17   FESLSDSVDVAKKLVEKSQESNEAESTTDLRSIEAGFEGVVKQMGETLQSIPESTFDEEE 76

Query: 128  EISDQMNRLQNEMQRVEF-KASQSQIVDKLNQGLRDQKLDQGFANDMLEEIARAVGVPVE 186
             I   +  L NEMQ       S+S+++   N G   QK+      D++ E       P +
Sbjct: 77   YIGVVIQSLSNEMQNATIGDGSKSEMI---NNG--QQKISAKHTPDIVSEQMEEDLYPTD 131

Query: 187  PS--------------------EISKELASFRREKEEAANRKERAEVLFLDQVIELLSRA 226
            P                     +I  +     R+++   + + ++ V  +  +    +  
Sbjct: 132  PEFSYESYMMYSESQSQMTDIPDIPSKSTDVSRQRKHGNHSESQSLVTEIPDIPSQSTNV 191

Query: 227  DAARDYEEVKKQYFQRLQIIE------RYDSRENYIQ-----------------PLNAFK 263
             + R +  + K   Q  +I +         S+  Y                   P  AF 
Sbjct: 192  SSQRKHGNLSKSQSQSTEIPDIPSQSSNASSQRKYGNLSESLSMLPQVTQFMEPPYQAFI 251

Query: 264  CRITGTVMMDPVSLYTGTTCERAAIEAWLDRREKTD----PETGVVLEDTSLRSNSPLRQ 319
            C +T  +M DPV+  TG TCER A+  W D    +D    P TG  L  T L +N  L+ 
Sbjct: 252  CPLTKEIMEDPVTTETGVTCERQAVIEWFDSFGNSDEINCPVTGQKL-TTELSANVVLKT 310

Query: 320  SIEEWKELNYCLNIRCCRAKL-LSGIDSSELEALDQMQDLMRESSINKDWISIGGITDII 378
             I+EWK  N    I+   A L L G +S  ++AL  +Q        NK  +   GI  ++
Sbjct: 311  IIQEWKVRNEAARIKVAHAALSLGGSESMVIDALRDLQMTCEGKEYNKVQVREAGIIQLL 370

Query: 379  ISILGSSHNKDVKMKILITLKQLVKGHARN-KEKVIDYGGWDHIVPCLGRDPS-ISLAAV 436
               L +  +KDV+ ++L  L+ L      + KE ++       ++  LG     +  AA 
Sbjct: 371  DRYL-TYRSKDVRFELLKFLRTLADEETDDGKEMIVKTITMSCVIKLLGSSHQPVRHAAQ 429

Query: 437  KLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVRES--AECAEKILQQLFDVDE 494
             LL EL + +       C K+      IL LVT       +S  +E +++IL+ L    E
Sbjct: 430  ALLLELSKSQHA-----CEKIGTARGAILMLVTAKYNRELDSFASETSDQILRNLEKCPE 484

Query: 495  ENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLV 554
             N  + A+SG  +PL+  + +G+E +++ M   L+ +++       +  E   P L+GLV
Sbjct: 485  -NIKQMAESGLLEPLLGHLAEGSEETQVAMAAYLVEIDIGHEKKTYVA-EKACPALIGLV 542

Query: 555  GSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSE---I 611
             S N  ++  +   L  +S    N +++   G I  ++E MF+  V S+++   +E   I
Sbjct: 543  QSENIDARRAAFKALAHISLYHPNNKILVEVGIIKIMVEEMFTKRVFSDLMNSRNEAATI 602

Query: 612  LEKLSSDGIK---FLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSE 668
            L  +   G++   F V+  G+ L  +  V N++ + +N +S  ++    +R L  + KS 
Sbjct: 603  LANILESGLEHETFEVNTHGHTLGSDYFVYNIIHMLKN-SSPDDLNIDLIRILLSLSKSP 661

Query: 669  AELVKI-AVVKANGVSL-ILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPK-RL 725
              +  I +V+K    S  ++ L+++   E+   A+ LL   + +    + E L K + + 
Sbjct: 662  RAMATIVSVIKETDASFAMIELINNPHDELGVGALKLLIALTPYIGHTLSERLCKTRGQP 721

Query: 726  EALVGF-LENDAKHDVQMAAAGLLANLPKSELSLTMKLIE----LDGLNAIINILKSGTM 780
            E L+   +E +   +    +A LLA LP   L+L + L+      + L+AI  I +SG  
Sbjct: 722  ENLIQCPVEANQITEKHAVSAKLLAKLPHQNLTLNLALVNESIVSEILHAIHLIQRSGAR 781

Query: 781  EAK------ENALSALFRFT----DPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAA 830
             ++      E  +  L RFT    +P  +   RN     +  + V+LL   S     R +
Sbjct: 782  TSRYATDFLEGLVGILVRFTTTLYEPQMMYLARN---HDLTSVFVDLLMKTSSDEVQRLS 838

Query: 831  AL------IGTLSTSSP------KFT---DMPESAGCWCFRPSRAHLCQVHGGICSESTS 875
            A         T++ S P      KF     MP S      +  +  +C +H G+CS   +
Sbjct: 839  ATGLENLSSTTMTLSRPPQPRSTKFMGSLSMPRSFSLRSSKKKQIEICAIHRGVCSAKNT 898

Query: 876  FCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQ-QRGVNVLHQEEAIKPTLE- 933
            FCL++ANA+  L+  LQ         A+  + TL+ +  + ++ +++L +  A++  L  
Sbjct: 899  FCLVEANAITKLLACLQSDKVEVVESALAAICTLLDDKVEVEKSLSMLSEMNAVQLILNA 958

Query: 934  ILTWGTDSLKEEALGFLEKVFMSKEMVDTYG---SSARLLLVPLTSRNVHEDGSLERKAA 990
            +     +SL ++A   ++K  +     D Y    S  R+L   L S     DG+  + A 
Sbjct: 959  VKEHKKESLLQKAFWMIDKFIIRGG--DKYASEISQDRMLSGMLVSAFHRGDGNTRQMAE 1016

Query: 991  KVLSLIERYSRSST 1004
             +L  +++    ST
Sbjct: 1017 NILRRLDKMPSFST 1030

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp\|Q9SFX2\|PUB43_ARATH U-box domain-containing protein 43 OS=Arabidopsis thaliana GN=PUB43 PE=2 SV=1	Back alignment and function description

>sp\|Q9LM76\|PUB44_ARATH U-box domain-containing protein 44 OS=Arabidopsis thaliana GN=PUB44 PE=1 SV=1	Back alignment and function description

>sp\|Q5XEZ8\|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1	Back alignment and function description

>sp\|Q8GWV5\|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2	Back alignment and function description

>sp\|Q5VRH9\|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1	Back alignment and function description

>sp\|O22193\|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3	Back alignment and function description

>sp\|Q9SNC6\|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1	Back alignment and function description

>sp\|Q8VZ40\|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1	Back alignment and function description

>sp\|Q8GUG9\|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1012
224107933		1032	predicted protein [Populus trichocarpa]	0.992	0.972	0.760	0.0
255572743		1017	E3 ubiquitin ligase PUB14, putative [Ric	1.0	0.995	0.750	0.0
359477593		1016	PREDICTED: U-box domain-containing prote	0.998	0.994	0.708	0.0
297737144		1013	unnamed protein product [Vitis vinifera]	0.961	0.960	0.712	0.0
356501785		1018	PREDICTED: U-box domain-containing prote	0.985	0.979	0.675	0.0
147802495		1147	hypothetical protein VITISV_040938 [Viti	0.972	0.857	0.689	0.0
356535341		1014	PREDICTED: U-box domain-containing prote	0.982	0.980	0.671	0.0
118486055		660	unknown [Populus trichocarpa]	0.650	0.996	0.733	0.0
302805444		986	hypothetical protein SELMODRAFT_10232 [S	0.950	0.975	0.365	1e-160
302782461		986	hypothetical protein SELMODRAFT_10235 [S	0.950	0.975	0.360	1e-152

>gi\|224107933\|ref\|XP_002314659.1\| predicted protein [Populus trichocarpa] gi\|222863699\|gb\|EEF00830.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1568 bits (4059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 767/1008 (76%), Positives = 876/1008 (86%), Gaps = 4/1008 (0%)

Query: 9    GTILAVLTNQVIKTAQAAKNVVYEKESFKVLSKHLFDIESVLKELQLQKLNDSQAVRLAL 68
            GTILAVLT+QV+KTAQAAK+V+ EKESFKVL+KHLFDIESVLKELQLQKL+DS+A R AL
Sbjct: 25   GTILAVLTSQVLKTAQAAKDVLIEKESFKVLAKHLFDIESVLKELQLQKLDDSRAARQAL 84

Query: 69   ESLEADVEKANNLVEKYKNKSRFYLLVKCRYIVNEIQEVTRNIGRSLASLSLANTEVLSE 128
            E+LEADV+KANNLVEKYKN++RFYLLVKCR+IVNE+QEVTR+IGRSLA+LSLANTEVL+ 
Sbjct: 85   ETLEADVKKANNLVEKYKNRARFYLLVKCRHIVNEVQEVTRDIGRSLAALSLANTEVLAG 144

Query: 129  ISDQMNRLQNEMQRVEFKASQSQ--IVDKLNQGLRDQKLDQGFANDMLEEIARAVGVPVE 186
            ISDQMNRLQ+EM+R EF+AS SQ  IVDKLNQGLRDQKLDQGFAND+LEEIARAVGVPVE
Sbjct: 145  ISDQMNRLQDEMRRAEFEASHSQLQIVDKLNQGLRDQKLDQGFANDILEEIARAVGVPVE 204

Query: 187  PSEISKELASFRREKEEAANRKERAEVLFLDQVIELLSRADAARDYEEVKKQYFQRLQII 246
            PSEISKELASFRREKEEAANRKERAEVLFL+QVIELLS ADAARDYEE+ KQYF RLQ++
Sbjct: 205  PSEISKELASFRREKEEAANRKERAEVLFLEQVIELLSHADAARDYEEITKQYFTRLQVV 264

Query: 247  ERYDSRENYIQPLNAFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDRREKTDPETGVVL 306
            ER+D RE YI PL  F C I GTVM DPVSL TGTTCERAAIEAW DR E+TDPETG +L
Sbjct: 265  ERFDDREEYITPLTPFLCCINGTVMTDPVSLCTGTTCERAAIEAWFDRGERTDPETGEIL 324

Query: 307  EDTSLRSNSPLRQSIEEWKELNYCLNIRCCRAKLLSGIDSSELEALDQMQDLMRESSINK 366
            EDT+LRSN  LRQSIEEW+ELNYCL IR  +AKLL+  DSS  EAL+QMQDLMRE+SINK
Sbjct: 325  EDTTLRSNVRLRQSIEEWRELNYCLRIRASKAKLLASADSSVEEALNQMQDLMRENSINK 384

Query: 367  DWISIGGITDIIISILGSSHNKDVKMKILITLKQLVKGHARNKEKVIDYGGWDHIVPCLG 426
            DWISIGG+TDIII ILG+SHNKD K KIL+TLK LVKGH RNKEK++DYGGWDH++PCLG
Sbjct: 385  DWISIGGLTDIIICILGTSHNKDEKRKILVTLKDLVKGHVRNKEKLVDYGGWDHVIPCLG 444

Query: 427  RDPSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKIL 486
            RDPSIS AAV+LLYEL+Q+RSGWNV+ CRKLSQQ S ILFLVTL+KG VRESA  AEKIL
Sbjct: 445  RDPSISKAAVELLYELLQERSGWNVSACRKLSQQGSAILFLVTLLKGQVRESAVYAEKIL 504

Query: 487  QQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGI 546
             +L ++DEEN   AAKSGWYKPLIDRI+QG +SSRI M++AL++MEL DS+L+LLG+EGI
Sbjct: 505  NKLVEIDEENISWAAKSGWYKPLIDRIVQGTDSSRISMVRALVNMELFDSDLKLLGEEGI 564

Query: 547  IPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIV 606
            +P LL ++ SGN +SKELSLS LVKLS C+ N+ELI+AAGG+P V+ LMFS+H+ S IIV
Sbjct: 565  LPSLLQMLSSGNLESKELSLSALVKLSDCAANKELIAAAGGLPLVITLMFSAHMRSMIIV 624

Query: 607  KCSEILEKLS--SDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRI 664
            KCSEILEK S   DGIKF +DE G +LELEPIV++LL LQQ  +SS NVR+PALR L  I
Sbjct: 625  KCSEILEKFSCDDDGIKFFIDENGAQLELEPIVSDLLALQQIAHSSQNVRRPALRTLLGI 684

Query: 665  CKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKR 724
            CK +A LVK AV+ A GVSL+L LLDDTDSE+REIAINLLFLFSHHEP+GVVEYLLKPKR
Sbjct: 685  CKFDAGLVKTAVLTAKGVSLVLPLLDDTDSEIREIAINLLFLFSHHEPQGVVEYLLKPKR 744

Query: 725  LEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKE 784
            LEALVGFLEND K DVQMAAAGLLANLPKSE+S+T KLI+LDGLNA+I I+++GTMEAKE
Sbjct: 745  LEALVGFLENDDKSDVQMAAAGLLANLPKSEVSVTTKLIDLDGLNALIKIIRTGTMEAKE 804

Query: 785  NALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFT 844
            NALSALFRFTDP N E QR VVE+G YPL VNLL  GS+ AKARAAALIG LS SSPK  
Sbjct: 805  NALSALFRFTDPANPETQRIVVEQGAYPLFVNLLTTGSVMAKARAAALIGDLSRSSPKLV 864

Query: 845  DMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQ 904
             + ++ GCWCFRP+R HLC  HGGICS  T+FCL++A ALP LVKLLQG VH  A+EAIQ
Sbjct: 865  VVSKATGCWCFRPTRPHLCPAHGGICSVKTTFCLIEATALPVLVKLLQGEVHVIAHEAIQ 924

Query: 905  TLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTWGTDSLKEEALGFLEKVFMSKEMVDTYG 964
            TLSTLVQEG   RG NVLH+ +AIKP L+I TWGTDSLKEEALG LEKVF+S+EMV+ YG
Sbjct: 925  TLSTLVQEGSPNRGANVLHEADAIKPVLDIFTWGTDSLKEEALGLLEKVFLSREMVEHYG 984

Query: 965  SSARLLLVPLTSRNVHEDGSLERKAAKVLSLIERYSRSSTSLIPGLFG 1012
             SARL+LV +  RN HED  + R+ AKVLSL+ERYSRSSTSL+PG+FG
Sbjct: 985  PSARLILVGMPGRNGHEDSRMGRRVAKVLSLLERYSRSSTSLLPGIFG 1032

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255572743\|ref\|XP_002527304.1\| E3 ubiquitin ligase PUB14, putative [Ricinus communis] gi\|223533304\|gb\|EEF35056.1\| E3 ubiquitin ligase PUB14, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|359477593\|ref\|XP_002283969.2\| PREDICTED: U-box domain-containing protein 43-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297737144\|emb\|CBI26345.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356501785\|ref\|XP_003519704.1\| PREDICTED: U-box domain-containing protein 43-like [Glycine max]	Back alignment and taxonomy information

>gi\|147802495\|emb\|CAN77516.1\| hypothetical protein VITISV_040938 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356535341\|ref\|XP_003536205.1\| PREDICTED: U-box domain-containing protein 44-like [Glycine max]	Back alignment and taxonomy information

>gi\|118486055\|gb\|ABK94871.1\| unknown [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|302805444\|ref\|XP_002984473.1\| hypothetical protein SELMODRAFT_10232 [Selaginella moellendorffii] gi\|300147861\|gb\|EFJ14523.1\| hypothetical protein SELMODRAFT_10232 [Selaginella moellendorffii]	Back alignment and taxonomy information

>gi\|302782461\|ref\|XP_002973004.1\| hypothetical protein SELMODRAFT_10235 [Selaginella moellendorffii] gi\|300159605\|gb\|EFJ26225.1\| hypothetical protein SELMODRAFT_10235 [Selaginella moellendorffii]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1012
TAIR\|locus:2014584		811	PUB43 "plant U-box 43" [Arabid	0.496	0.618	0.261	4.6e-38
TAIR\|locus:2030462		801	SAUL1 "senescence-associated E	0.647	0.817	0.252	2.9e-29
UNIPROTKB\|Q5VRH9		611	PUB12 "U-box domain-containing	0.266	0.441	0.244	8e-16
TAIR\|locus:2075140		660	PUB13 "plant U-box 13" [Arabid	0.311	0.477	0.212	3.4e-15
TAIR\|locus:2082682		632	PUB14 "plant U-box 14" [Arabid	0.087	0.140	0.358	5.5e-14
TAIR\|locus:2162276		660	PUB15 "Plant U-Box 15" [Arabid	0.240	0.368	0.226	5.9e-13
TAIR\|locus:2017719		612	AT1G23030 [Arabidopsis thalian	0.285	0.472	0.226	1.9e-11
TAIR\|locus:2158252		707	AT5G67340 [Arabidopsis thalian	0.262	0.376	0.227	4.3e-11
TAIR\|locus:2045334		829	PUB4 "plant U-box 4" [Arabidop	0.183	0.224	0.256	7.7e-11
UNIPROTKB\|Q6EUK7		728	PUB4 "U-box domain-containing	0.310	0.431	0.221	1.5e-10

TAIR\|locus:2014584 PUB43 "plant U-box 43" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 321 (118.1 bits), Expect = 4.6e-38, Sum P(2) = 4.6e-38
 Identities = 140/535 (26%), Positives = 237/535 (44%)

Query:   261 AFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDR-REKTDP-ETGVVLEDTSLRSNSP-- 316
             AF C +T  VM +PV+L  G T ER AIE W    RE   P    +  ++ S+   SP  
Sbjct:    28 AFICPLTKQVMHNPVTLENGQTFEREAIEKWFQECRENGQPLSCPITSKELSITDLSPSI 87

Query:   317 -LRQSIEEWKELNYCLNIRCCRAKL-LSGIDSSELEALDQMQDLMRE-SSINKDWXXXXX 373
              LR +IEEW+  N  L +   R  L L   +++ L AL  ++++ R    I +       
Sbjct:    88 ALRNTIEEWRARNDALKLDIARQSLYLGNAETNILLALKNVREICRNIRKIRQRVCNPQL 147

Query:   374 XXXXXXXXXXXXHNKDVKMKILITLKQLVKGHARNKEKVIDYGGWDHIVPCLGRDPSISL 433
                         H  +V+ K L TL+ +V+G   +K  V +      IV  L ++PS   
Sbjct:   148 VRLITDMLKSSSH--EVRCKALQTLQVVVEGDEESKAIVAEGDTVRTIVKFLSQEPSKGR 205

Query:   434 -AAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLI--KGPVRESAECAEKILQQLF 490
              AAV +L+EL +       A+C K+      I+ LV L   K     + E A+K L  L 
Sbjct:   206 EAAVSVLFELSKSE-----ALCEKIGSIHGAIILLVGLTSSKSENVSTVEKADKTLTNL- 259

Query:   491 DVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPL 550
             +  EEN  + A +G  +PL+ ++++G+  +++  M   L +  ++++++++  + +   L
Sbjct:   260 ERSEENVRQMAINGRLQPLLAKLLEGSPETKV-SMAFYLGVLALNNDVKVIVAQTVGSSL 318

Query:   551 LGLVGSGNFQXXXXXXXXXXXXXGCSKNRELISAAGGIPQVLELMFSSHV-PSNIIVKCS 609
             + L+ + +                   + +L+   G +P +++ +F  +V P+ + ++  
Sbjct:   319 IDLMRTRDMSQREAALGALNNISSFEGSAKLLINTGILPPLIKDLF--YVGPNQLPIRLK 376

Query:   610 E----ILEKLSSDGIKF---LVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALF 662
             E    IL  + + G  F    V      L  E IV NLL L  N       +  A+    
Sbjct:   377 EVSATILANIVNIGYDFDKVPVGPHHQTLVSEEIVENLLQLTSNTGPEIQGKLLAVLVGL 436

Query:   663 RICKSEAELVKIAVVKANGVXXXXXXXXXXXXE-VREIAINLLFLFSHHEPEGVVEYLLK 721
               C +    V  A+  +  +            + +R  +I LL   S H  E +   L  
Sbjct:   437 TSCPNSVINVVSAIRNSAAIISLVQFVEIHENDDLRLASIKLLHNISPHMSEELANALRS 496

Query:   722 PK-RLEALVGFL-ENDAK-HDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIIN 773
                +L +LV  + EN     + Q AAAGLLA LP+ +L LTM+L+       II+
Sbjct:   497 TVGQLGSLVSIISENTPTITEEQAAAAGLLAELPERDLVLTMRLLREGAFEKIIS 551

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR\|locus:2030462 SAUL1 "senescence-associated E3 ubiquitin ligase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2162276 PUB15 "Plant U-Box 15" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2158252 AT5G67340 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6EUK7 PUB4 "U-box domain-containing protein 4" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1012
smart00504		63	smart00504, Ubox, Modified RING finger domain	3e-15
pfam04564		73	pfam04564, U-box, U-box domain	9e-12
cd00020		120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-08
cd00020		120	cd00020, ARM, Armadillo/beta-catenin-like repeats	7e-06
cd00020		120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-05
COG5064		526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	6e-05
cd00020		120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-04
PLN03200		2102	PLN03200, PLN03200, cellulose synthase-interactive	0.001
pfam13513		55	pfam13513, HEAT_EZ, HEAT-like repeat	0.002
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.004

>gnl\|CDD\|128780 smart00504, Ubox, Modified RING finger domain	Back alignment and domain information

 Score = 70.3 bits (173), Expect = 3e-15
 Identities = 30/64 (46%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 261 AFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDRREKTDPETGVVLEDTSLRSNSPLRQS 320
            F C I+  VM DPV L +G T ER+AIE WL     TDP TG  L    L  N  L+ +
Sbjct: 1   EFLCPISLEVMKDPVILPSGQTYERSAIEKWLLSH-GTDPVTGQPLTHEDLIPNLALKSA 59

Query: 321 IEEW 324
           I+EW
Sbjct: 60  IQEW 63

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63

>gnl\|CDD\|203049 pfam04564, U-box, U-box domain	Back alignment and domain information

>gnl\|CDD\|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats	Back alignment and domain information

>gnl\|CDD\|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats	Back alignment and domain information

>gnl\|CDD\|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats	Back alignment and domain information

>gnl\|CDD\|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>gnl\|CDD\|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats	Back alignment and domain information

>gnl\|CDD\|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>gnl\|CDD\|205691 pfam13513, HEAT_EZ, HEAT-like repeat	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1012
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	100.0
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	100.0
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	100.0
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	100.0
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	99.97
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.96
PF05804		708	KAP: Kinesin-associated protein (KAP)	99.94
PF05804		708	KAP: Kinesin-associated protein (KAP)	99.93
KOG1048		717	consensus Neural adherens junction protein Plakoph	99.85
PF04564		73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.85
KOG1048		717	consensus Neural adherens junction protein Plakoph	99.81
KOG2122		2195	consensus Beta-catenin-binding protein APC, contai	99.81
KOG4500		604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.72
KOG1222		791	consensus Kinesin associated protein KAP [Intracel	99.66
KOG2122		2195	consensus Beta-catenin-binding protein APC, contai	99.65
KOG4199		461	consensus Uncharacterized conserved protein [Funct	99.64
smart00504		63	Ubox Modified RING finger domain. Modified RING fi	99.63
KOG4199		461	consensus Uncharacterized conserved protein [Funct	99.62
KOG1222		791	consensus Kinesin associated protein KAP [Intracel	99.6
KOG4500		604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.57
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.49
KOG1293		678	consensus Proteins containing armadillo/beta-caten	99.43
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.38
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.35
PRK09687		280	putative lyase; Provisional	99.35
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.34
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	99.3
PRK09687		280	putative lyase; Provisional	99.28
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	99.26
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.26
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.26
KOG1293		678	consensus Proteins containing armadillo/beta-caten	99.25
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.22
KOG4642		284	consensus Chaperone-dependent E3 ubiquitin protein	99.17
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.11
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	99.02
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	99.01
PF15227		42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.01
PLN03208		193	E3 ubiquitin-protein ligase RMA2; Provisional	98.95
cd00256		429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.91
PTZ00429		746	beta-adaptin; Provisional	98.88
COG5113		929	UFD2 Ubiquitin fusion degradation protein 2 [Postt	98.85
PTZ00429		746	beta-adaptin; Provisional	98.85
TIGR00599		397	rad18 DNA repair protein rad18. This family is bas	98.82
cd00256		429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.81
KOG0168		1051	consensus Putative ubiquitin fusion degradation pr	98.8
KOG2042		943	consensus Ubiquitin fusion degradation protein-2 [	98.79
KOG0168		1051	consensus Putative ubiquitin fusion degradation pr	98.76
PF11789		57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	98.74
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	98.69
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	98.69
PF13923		39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.58
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	98.53
PF03224		312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.52
PF03224		312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.52
PF05536		543	Neurochondrin: Neurochondrin	98.52
PF13445		43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.48
KOG2759		442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.43
KOG2160		342	consensus Armadillo/beta-catenin-like repeat-conta	98.43
PF14835		65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.34
PF00097		41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.31
KOG3678		832	consensus SARM protein (with sterile alpha and arm	98.28
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	98.25
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.21
KOG0287		442	consensus Postreplication repair protein RAD18 [Re	98.21
PHA02929		238	N1R/p28-like protein; Provisional	98.16
PF13920		50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.16
KOG3678		832	consensus SARM protein (with sterile alpha and arm	98.16
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.16
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	98.15
KOG0823		230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.13
KOG2160		342	consensus Armadillo/beta-catenin-like repeat-conta	98.13
KOG2759		442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.1
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	98.04
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.03
KOG0212		675	consensus Uncharacterized conserved protein [Funct	98.02
TIGR02270		410	conserved hypothetical protein. Members are found	98.02
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	98.01
KOG1824		1233	consensus TATA-binding protein-interacting protein	97.96
cd00162		45	RING RING-finger (Really Interesting New Gene) dom	97.96
KOG4413		524	consensus 26S proteasome regulatory complex, subun	97.96
TIGR02270		410	conserved hypothetical protein. Members are found	97.95
PF13639		44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	97.95
KOG2177		386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.95
COG5432		391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.94
KOG4413		524	consensus 26S proteasome regulatory complex, subun	97.91
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	97.91
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.9
KOG4646		173	consensus Uncharacterized conserved protein, conta	97.88
KOG1789		2235	consensus Endocytosis protein RME-8, contains DnaJ	97.84
KOG0317		293	consensus Predicted E3 ubiquitin ligase, integral	97.82
KOG1824		1233	consensus TATA-binding protein-interacting protein	97.82
KOG2973		353	consensus Uncharacterized conserved protein [Funct	97.81
PF05536		543	Neurochondrin: Neurochondrin	97.8
smart00184		39	RING Ring finger. E3 ubiquitin-protein ligase acti	97.79
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	97.78
KOG0311		381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.76
KOG1789		2235	consensus Endocytosis protein RME-8, contains DnaJ	97.76
PHA02926		242	zinc finger-like protein; Provisional	97.73
KOG1242		569	consensus Protein containing adaptin N-terminal re	97.73
KOG0320		187	consensus Predicted E3 ubiquitin ligase [Posttrans	97.72
KOG2973		353	consensus Uncharacterized conserved protein [Funct	97.71
KOG4646		173	consensus Uncharacterized conserved protein, conta	97.69
PF00514		41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.67
PF00514		41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.6
COG1413		335	FOG: HEAT repeat [Energy production and conversion	97.59
PF14664		371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.56
COG1413		335	FOG: HEAT repeat [Energy production and conversion	97.54
PF05659		147	RPW8: Arabidopsis broad-spectrum mildew resistance	97.53
PF14664		371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.51
TIGR00570		309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.5
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	97.47
PF14634		44	zf-RING_5: zinc-RING finger domain	97.44
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	97.41
KOG1242		569	consensus Protein containing adaptin N-terminal re	97.4
KOG0978		698	consensus E3 ubiquitin ligase involved in syntaxin	97.4
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	97.32
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	97.25
COG5574		271	PEX10 RING-finger-containing E3 ubiquitin ligase [	97.24
COG5231		432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.23
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.16
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.13
KOG0297		391	consensus TNF receptor-associated factor [Signal t	97.08
KOG2259		823	consensus Uncharacterized conserved protein [Funct	97.07
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.06
COG5369		743	Uncharacterized conserved protein [Function unknow	97.03
PF12678		73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	97.02
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	96.93
KOG2164		513	consensus Predicted E3 ubiquitin ligase [Posttrans	96.93
KOG2660		331	consensus Locus-specific chromosome binding protei	96.92
COG5222		427	Uncharacterized conserved protein, contains RING Z	96.91
KOG0212		675	consensus Uncharacterized conserved protein [Funct	96.87
PF10165		446	Ric8: Guanine nucleotide exchange factor synembryn	96.84
KOG4159		398	consensus Predicted E3 ubiquitin ligase [Posttrans	96.84
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	96.82
KOG4535		728	consensus HEAT and armadillo repeat-containing pro	96.77
KOG2259		823	consensus Uncharacterized conserved protein [Funct	96.77
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.75
smart00185		41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.72
KOG0567		289	consensus HEAT repeat-containing protein [General	96.72
COG5369		743	Uncharacterized conserved protein [Function unknow	96.65
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	96.63
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.62
KOG2734		536	consensus Uncharacterized conserved protein [Funct	96.58
KOG2734		536	consensus Uncharacterized conserved protein [Funct	96.57
PF10165		446	Ric8: Guanine nucleotide exchange factor synembryn	96.49
smart00185		41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.47
KOG1078		865	consensus Vesicle coat complex COPI, gamma subunit	96.25
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	96.24
KOG0289		506	consensus mRNA splicing factor [General function p	96.22
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.21
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.2
KOG0567		289	consensus HEAT repeat-containing protein [General	96.13
PF12861		85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	96.05
KOG1517		1387	consensus Guanine nucleotide binding protein MIP1	96.0
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	95.95
KOG1002		791	consensus Nucleotide excision repair protein RAD16	95.91
COG5096		757	Vesicle coat complex, various subunits [Intracellu	95.8
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	95.79
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.75
PF09759		102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	95.74
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	95.63
PF11841		160	DUF3361: Domain of unknown function (DUF3361)	95.57
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	95.56
KOG1813		313	consensus Predicted E3 ubiquitin ligase [Posttrans	95.48
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	95.48
KOG4151		748	consensus Myosin assembly protein/sexual cycle pro	95.39
KOG4151		748	consensus Myosin assembly protein/sexual cycle pro	95.34
KOG2979		262	consensus Protein involved in DNA repair [General	95.33
PF04641		260	Rtf2: Rtf2 RING-finger	95.27
KOG1517		1387	consensus Guanine nucleotide binding protein MIP1	95.18
KOG0414		1251	consensus Chromosome condensation complex Condensi	95.1
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	95.03
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	95.0
KOG3039		303	consensus Uncharacterized conserved protein [Funct	94.97
KOG0802		543	consensus E3 ubiquitin ligase [Posttranslational m	94.94
COG5231		432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	94.86
KOG1078		865	consensus Vesicle coat complex COPI, gamma subunit	94.81
KOG0824		324	consensus Predicted E3 ubiquitin ligase [Posttrans	94.76
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	94.63
PF09759		102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	94.58
KOG4367		699	consensus Predicted Zn-finger protein [Function un	94.39
KOG4628		348	consensus Predicted E3 ubiquitin ligase [Posttrans	94.38
PF11698		119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	94.38
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	94.35
PF11841		160	DUF3361: Domain of unknown function (DUF3361)	94.35
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	94.14
COG5152		259	Uncharacterized conserved protein, contains RING a	94.12
KOG0826		357	consensus Predicted E3 ubiquitin ligase involved i	93.89
KOG3036		293	consensus Protein involved in cell differentiation	93.8
PRK14707		2710	hypothetical protein; Provisional	93.53
KOG0804		493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	93.5
KOG3039		303	consensus Uncharacterized conserved protein [Funct	93.42
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	93.37
KOG2879		298	consensus Predicted E3 ubiquitin ligase [Posttrans	92.97
PF13764		802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	92.61
PF05004		309	IFRD: Interferon-related developmental regulator (	92.53
COG5096		757	Vesicle coat complex, various subunits [Intracellu	92.51
COG5540		374	RING-finger-containing ubiquitin ligase [Posttrans	92.46
PF04078		262	Rcd1: Cell differentiation family, Rcd1-like ; Int	92.35
PF08045		257	CDC14: Cell division control protein 14, SIN compo	92.07
PF04063		192	DUF383: Domain of unknown function (DUF383); Inter	92.02
PF04063		192	DUF383: Domain of unknown function (DUF383); Inter	91.79
KOG3036		293	consensus Protein involved in cell differentiation	91.69
COG5243		491	HRD1 HRD ubiquitin ligase complex, ER membrane com	91.63
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	91.56
PF04078		262	Rcd1: Cell differentiation family, Rcd1-like ; Int	91.52
KOG2062		929	consensus 26S proteasome regulatory complex, subun	91.24
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	91.12
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	90.98
KOG1788		2799	consensus Uncharacterized conserved protein [Funct	90.85
PF11701		157	UNC45-central: Myosin-binding striated muscle asse	90.8
PRK14707		2710	hypothetical protein; Provisional	90.44
PF08045		257	CDC14: Cell division control protein 14, SIN compo	90.2
KOG2817		394	consensus Predicted E3 ubiquitin ligase [Posttrans	90.13
KOG2999		713	consensus Regulator of Rac1, required for phagocyt	90.1
PF07814		361	WAPL: Wings apart-like protein regulation of heter	89.97
PF05004		309	IFRD: Interferon-related developmental regulator (	89.93
KOG2611		698	consensus Neurochondrin/leucine-rich protein (Neur	89.89
KOG4535		728	consensus HEAT and armadillo repeat-containing pro	89.76
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	89.55
PF13764		802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	89.44
PF11698		119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	89.18
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	89.16
KOG0883		518	consensus Cyclophilin type, U box-containing pepti	88.94
PF02891		50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	88.94
KOG1645		463	consensus RING-finger-containing E3 ubiquitin liga	88.93
PF11793		70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	88.32
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	87.92
KOG3113		293	consensus Uncharacterized conserved protein [Funct	87.85
PF08569		335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	87.75
PF11701		157	UNC45-central: Myosin-binding striated muscle asse	87.6
PF06025		379	DUF913: Domain of Unknown Function (DUF913); Inter	87.51
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	87.48
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	87.24
KOG1734		328	consensus Predicted RING-containing E3 ubiquitin l	87.01
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	86.68
COG5116		926	RPN2 26S proteasome regulatory complex component [	86.57
PF14668		73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	85.66
KOG2062		929	consensus 26S proteasome regulatory complex, subun	84.9
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	84.44
COG5627		275	MMS21 DNA repair protein MMS21 [DNA replication, r	84.16
smart00744		49	RINGv The RING-variant domain is a C4HC3 zinc-fing	84.04
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	83.62
COG5109		396	Uncharacterized conserved protein, contains RING Z	83.33
PF14570		48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	83.31
KOG1832		1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	83.13
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	82.95
KOG2999		713	consensus Regulator of Rac1, required for phagocyt	82.78
PF08569		335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	82.73
PF07814		361	WAPL: Wings apart-like protein regulation of heter	82.71
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	82.06
KOG1785		563	consensus Tyrosine kinase negative regulator CBL [	81.8
KOG1039		344	consensus Predicted E3 ubiquitin ligase [Posttrans	81.5

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

Probab=100.00  E-value=4.1e-51  Score=514.23  Aligned_cols=611  Identities=17%  Similarity=0.206  Sum_probs=499.8

Q ss_pred             hHHHHHHHHHHHHhhccccchhHhc-cCchHHHHHHhccCCCHHHHHHHHHHHHHHhccccchhhhhhhcCCcccccccc
Q 001796          347 SELEALDQMQDLMRESSINKDWISI-GGITDIIISILGSSHNKDVKMKILITLKQLVKGHARNKEKVIDYGGWDHIVPCL  425 (1012)
Q Consensus       347 ~~~~~l~~l~~l~~~~~~~r~~i~~-~g~v~~Lv~lL~~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~i~~lv~lL  425 (1012)
                      ...+++.+++.+.+.++.||.++.+ .|++|.|+.+|.+ ++..++..|+..|..++.. +++|..|+..|++|+|+.+|
T Consensus        31 ~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~s-g~~~vk~nAaaaL~nLS~~-e~nk~~Iv~~GaIppLV~LL  108 (2102)
T PLN03200         31 EKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRS-GTLGAKVNAAAVLGVLCKE-EDLRVKVLLGGCIPPLLSLL  108 (2102)
T ss_pred             HHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcC-HHHHHHHHHcCChHHHHHHH
Confidence            4567899999999999999998875 8999999999976 6788999999999999975 78999999999999999999


Q ss_pred             cc-CChhhHHHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhcCCC---HHHHHHHHHHHHHhhcCChhhHHHHh
Q 001796          426 GR-DPSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPV---RESAECAEKILQQLFDVDEENFCRAA  501 (1012)
Q Consensus       426 ~~-~~~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~---~~~~~~A~~~L~~La~~~~~~~~~i~  501 (1012)
                      .+ +...+++|+++|.+++.++.+  +.....++...|+||.|+.++++++   ..++..|+.+|+||+..++.....+.
T Consensus       109 ~sGs~eaKe~AA~AL~sLS~~~~~--D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~II  186 (2102)
T PLN03200        109 KSGSAEAQKAAAEAIYAVSSGGLS--DHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATL  186 (2102)
T ss_pred             HCCCHHHHHHHHHHHHHHHcCcch--hhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHH
Confidence            65 457889999999999986421  1222356677899999999999864   23567788999999977766667789


Q ss_pred             hcCCcHHHHHHHhcCChHHHHHHHHHHHhcccc-cchhhHhhhcCChHHHHhhhcCC-ChhHHHHHHHHHHHhcCC-Cch
Q 001796          502 KSGWYKPLIDRIIQGAESSRILMMKALLSMELV-DSNLELLGKEGIIPPLLGLVGSG-NFQSKELSLSVLVKLSGC-SKN  578 (1012)
Q Consensus       502 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~-~~~  578 (1012)
                      +.|++|.|+.+|+++++..+.+|+.+|.+++.+ ++.+..+++.|+||.|+++|+++ ++.+++.|+++|.||+.+ +++
T Consensus       187 eaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~  266 (2102)
T PLN03200        187 EAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEA  266 (2102)
T ss_pred             HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHH
Confidence            999999999999999999999999999988875 66899999999999999999865 468999999999999975 788


Q ss_pred             HHHHHHcCChHHHHHHhhcCCC-------ChhHHHHHHHHHHHhhccCcc--------------c------------e--
Q 001796          579 RELISAAGGIPQVLELMFSSHV-------PSNIIVKCSEILEKLSSDGIK--------------F------------L--  623 (1012)
Q Consensus       579 ~~~i~~~g~i~~Lv~lL~~~~~-------~~~~~~~a~~~L~nLa~~~~~--------------~------------~--  623 (1012)
                      +..+++.|+||+|++++.+...       ....+++|+|+|.|+|.+...              .            .  
T Consensus       267 r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~  346 (2102)
T PLN03200        267 KQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALM  346 (2102)
T ss_pred             HHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence            9999999999999999986432       234579999999999983111              0            0  


Q ss_pred             -ecccC---Ccc------------------------------------------chhHHHHHHHHHHhccCCChhhHHHH
Q 001796          624 -VDEKG---NRL------------------------------------------ELEPIVTNLLTLQQNFNSSYNVRKPA  657 (1012)
Q Consensus       624 -~~~~g---~~l------------------------------------------~~~~~v~~Ll~ll~~~~~~~~~~~~a  657 (1012)
                       .+...   ..+                                          ...++++.|++++..++  .+.++++
T Consensus       347 l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~--~evQ~~A  424 (2102)
T PLN03200        347 VFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMAT--ADVQEEL  424 (2102)
T ss_pred             hcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCC--HHHHHHH
Confidence             00000   000                                          00112233444444433  5689999


Q ss_pred             HHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCc
Q 001796          658 LRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAK  737 (1012)
Q Consensus       658 l~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~  737 (1012)
                      +++|+++|.++.+ .++.|.+.|+++.|+++|.+++..++..|++++++++...+ +....+.+.|++|+|+++|+++ +
T Consensus       425 v~aL~~L~~~~~e-~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~nd-enr~aIieaGaIP~LV~LL~s~-~  501 (2102)
T PLN03200        425 IRALSSLCCGKGG-LWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVD-ESKWAITAAGGIPPLVQLLETG-S  501 (2102)
T ss_pred             HHHHHHHhCCCHH-HHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHcCC-C
Confidence            9999999987655 67999999999999999999999999999999999997643 4445678999999999999987 6


Q ss_pred             hHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHH---------------H-
Q 001796          738 HDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLE---------------A-  801 (1012)
Q Consensus       738 ~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~---------------~-  801 (1012)
                      .++++.|+++|+||+.++.+.+..+.++|++|+|+++|+++++++++.|+++|.+++...+.+               . 
T Consensus       502 ~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~  581 (2102)
T PLN03200        502 QKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESK  581 (2102)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHH
Confidence            799999999999999977776666778999999999999999999999999999996432221               0 


Q ss_pred             --------------------HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCc
Q 001796          802 --------------------QRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAH  861 (1012)
Q Consensus       802 --------------------~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~  861 (1012)
                                          +......|++|.|+++++++++.+++.|+++|.++..                       
T Consensus       582 ~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a-----------------------  638 (2102)
T PLN03200        582 VHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFS-----------------------  638 (2102)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhc-----------------------
Confidence                                0111246899999999999999999999999999933                       


Q ss_pred             cccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHHHhccCChh
Q 001796          862 LCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTWGTDS  941 (1012)
Q Consensus       862 ~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll~s~~~~  941 (1012)
                         .+...|     ..++.+|+|+||+.+|.+++.+++.+|++||.+|+.. ..+..+..+.+.|+|++|++++.+.+..
T Consensus       639 ---~~~d~~-----~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~-~~~~q~~~~v~~GaV~pL~~LL~~~d~~  709 (2102)
T PLN03200        639 ---SRQDLC-----ESLATDEIINPCIKLLTNNTEAVATQSARALAALSRS-IKENRKVSYAAEDAIKPLIKLAKSSSIE  709 (2102)
T ss_pred             ---CChHHH-----HHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhC-CCHHHHHHHHHcCCHHHHHHHHhCCChH
Confidence               222222     5688899999999999999999999999999999963 1345556678889999999999999999


Q ss_pred             hHhHHHHHHHHHhchHhhHhhhcccccc-hhhhhhhhcccCCchHHHHHHHHHHHHHhccC
Q 001796          942 LKEEALGFLEKVFMSKEMVDTYGSSARL-LLVPLTSRNVHEDGSLERKAAKVLSLIERYSR 1001 (1012)
Q Consensus       942 ~~~~a~~aL~~l~~~~~~~~~~~~~~~~-~l~~L~~~~~~~~~~~~~~Aa~~L~~L~~~~~ 1001 (1012)
                      +++.|+.+|.+++.+++.+.+++..+.+ +|+.+++   +|+++.|+.|+++|.+|.+...
T Consensus       710 v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr---~G~~~~k~~Aa~AL~~L~~~~~  767 (2102)
T PLN03200        710 VAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLR---EGTLEGKRNAARALAQLLKHFP  767 (2102)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHH---hCChHHHHHHHHHHHHHHhCCC
Confidence            9999999999999998877776644443 5666665   8999999999999999987643

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>PF05804 KAP: Kinesin-associated protein (KAP)	Back alignment and domain information

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]	Back alignment and domain information

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis	Back alignment and domain information

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]	Back alignment and domain information

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]	Back alignment and domain information

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>smart00504 Ubox Modified RING finger domain	Back alignment and domain information

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A	Back alignment and domain information

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional	Back alignment and domain information

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>TIGR00599 rad18 DNA repair protein rad18	Back alignment and domain information

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments	Back alignment and domain information

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PF05536 Neurochondrin: Neurochondrin	Back alignment and domain information

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A	Back alignment and domain information

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]	Back alignment and domain information

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B	Back alignment and domain information

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]	Back alignment and domain information

>PHA02929 N1R/p28-like protein; Provisional	Back alignment and domain information

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A	Back alignment and domain information

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Back alignment and domain information

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A	Back alignment and domain information

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]	Back alignment and domain information

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]	Back alignment and domain information

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF05536 Neurochondrin: Neurochondrin	Back alignment and domain information

>smart00184 RING Ring finger	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PHA02926 zinc finger-like protein; Provisional	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]	Back alignment and domain information

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless	Back alignment and domain information

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots	Back alignment and domain information

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term	Back alignment and domain information

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF14634 zf-RING_5: zinc-RING finger domain	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>COG5369 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]	Back alignment and domain information

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []	Back alignment and domain information

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>smart00185 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]	Back alignment and domain information

>COG5369 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []	Back alignment and domain information

>smart00185 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0289 consensus mRNA splicing factor [General function prediction only]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]	Back alignment and domain information

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger	Back alignment and domain information

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF11841 DUF3361: Domain of unknown function (DUF3361)	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG2979 consensus Protein involved in DNA repair [General function prediction only]	Back alignment and domain information

>PF04641 Rtf2: Rtf2 RING-finger	Back alignment and domain information

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]	Back alignment and domain information

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10	Back alignment and domain information

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]	Back alignment and domain information

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>PF11841 DUF3361: Domain of unknown function (DUF3361)	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]	Back alignment and domain information

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]	Back alignment and domain information

>PRK14707 hypothetical protein; Provisional	Back alignment and domain information

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]	Back alignment and domain information

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []	Back alignment and domain information

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1	Back alignment and domain information

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function	Back alignment and domain information

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function	Back alignment and domain information

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]	Back alignment and domain information

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []	Back alignment and domain information

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle	Back alignment and domain information

>PRK14707 hypothetical protein; Provisional	Back alignment and domain information

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1	Back alignment and domain information

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]	Back alignment and domain information

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]	Back alignment and domain information

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	Back alignment and domain information

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG3113 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis	Back alignment and domain information

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle	Back alignment and domain information

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5	Back alignment and domain information

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]	Back alignment and domain information

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]	Back alignment and domain information

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B	Back alignment and domain information

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]	Back alignment and domain information

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis	Back alignment and domain information

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]	Back alignment and domain information

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1012
1t1h_A		78	Nmr Solution Structure Of The U Box Domain From Atp		7e-06

>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78

Back alignment and structure

Iteration: 1

Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 37/67 (55%) Query: 262 FKCRITGTVMMDPVSLYTGTTCERAAIEAWLDRREKTDPETGVVLEDTSLRSNSPLRQSI 321 F+C I+ +M DPV + TG T ER++I+ WLD KT P++ L L N L+ I Sbjct: 9 FRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLI 68 Query: 322 EEWKELN 328 W E N Sbjct: 69 ALWCESN 75

PyMOL of 1t1h

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1012
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	4e-42
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	1e-34
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	3e-34
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	3e-32
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	1e-28
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-35
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-23
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-22
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-35
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-31
2z6h_A		644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-14
2f42_A		179	STIP1 homology and U-box containing protein 1; cha	1e-27
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	4e-25
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	2e-15
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	2e-06
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	8e-25
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-16
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-16
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	3e-24
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	1e-15
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	2e-12
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	9e-12
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	7e-11
3nmw_A		354	APC variant protein; ARMADIILO repeats domain, cel	2e-07
1t1h_A		78	Gspef-atpub14, armadillo repeat containing protein	8e-24
3oqs_A		510	Importin subunit alpha-2; importin alpha, karyophe	1e-23
3oqs_A		510	Importin subunit alpha-2; importin alpha, karyophe	1e-21
3oqs_A		510	Importin subunit alpha-2; importin alpha, karyophe	5e-09
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	3e-22
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	1e-19
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	8e-18
3nmz_A		458	APC variant protein; protein-protein complex, arma	4e-20
3nmz_A		458	APC variant protein; protein-protein complex, arma	2e-19
3nmz_A		458	APC variant protein; protein-protein complex, arma	2e-11
3nmz_A		458	APC variant protein; protein-protein complex, arma	1e-05
2kr4_A		85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	2e-18
3m62_A		968	Ubiquitin conjugation factor E4; armadillo-like re	4e-18
2kre_A		100	Ubiquitin conjugation factor E4 B; U-box domain, E	1e-17
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	4e-17
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	2e-16
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	2e-16
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	6e-14
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	9e-13
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	8e-11
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	9e-11
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	2e-05
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	5e-17
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-16
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	6e-06
1wgm_A		98	Ubiquitin conjugation factor E4A; ubiquitinating e	2e-16
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-15
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-11
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	9e-08
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-07
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	7e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	4e-13
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-10
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-08
3l6x_A		584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	6e-06
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-12
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	9e-11
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-07
1xm9_A		457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-05
2yu4_A		94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	3e-10
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	3e-09
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	4e-05
2c2l_A		281	CHIP, carboxy terminus of HSP70-interacting protei	4e-09
3opb_A		778	SWI5-dependent HO expression protein 4; heat and a	4e-09
3tt9_A		233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-08
3tt9_A		233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	7e-08
3tt9_A		233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	6e-05
3htk_C		267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	4e-08
2bay_A		61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	6e-08
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	1e-07
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	1e-05
3grl_A		651	General vesicular transport factor P115; vesicle t	2e-06
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	3e-04
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	8e-04
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	3e-04
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	8e-04

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

 Score =  161 bits (409), Expect = 4e-42
 Identities = 82/522 (15%), Positives = 176/522 (33%), Gaps = 42/522 (8%)

Query: 340 LLSGIDSSELEALDQMQDLMRESSINKDWISIGGITDIIISILGSSHNKDVKMKILITLK 399
           L         +A   +  L ++ +     +    +   I+  + ++++ +       TL 
Sbjct: 26  LNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLH 85

Query: 400 QLVKGHARNKEKVIDYGGWDHIVPCLGR-DPSISLAAVKLLYELMQDRSGWNVAVCRKLS 458
            L   H      +   GG   +V  LG    S+   A+  L+ L+  + G      +   
Sbjct: 86  NLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG-----AKMAV 139

Query: 459 QQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAE 518
           +   G+  +V L+     +        LQ L   ++E+      SG  + L++ +     
Sbjct: 140 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY 199

Query: 519 SSRILMMKALLS-MELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSK 577
              +     +L  + +  SN   + + G +  L   +   + +  +  L  L  LS  + 
Sbjct: 200 EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 259

Query: 578 NRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIV 637
            +      G +  +++L+ S  +  N++   + IL  L+ +       +    +     +
Sbjct: 260 KQ--EGMEGLLGTLVQLLGSDDI--NVVTCAAGILSNLTCNN-----YKNKMMVCQVGGI 310

Query: 638 TNLLTLQQNFNSSYNVRKPALRALFRIC--KSEAELVKIAVVKANGVSLILSLLDDTDSE 695
             L+          ++ +PA+ AL  +     EAE+ + AV    G+ +++ LL      
Sbjct: 311 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 370

Query: 696 VREIAINLLFLFSHHEPE--------GVVEYLL------------KPKRLEALVGFLEND 735
               A   L       P         G +  L+            +         F+E  
Sbjct: 371 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 430

Query: 736 AKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTD 795
              ++     G L  L +   +  + +  L+ +   + +L S     +  A   L     
Sbjct: 431 RMEEIVEGCTGALHILARDVHNRIV-IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA- 488

Query: 796 PTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLS 837
             + EA   +   G    L  LL   +      AAA++  +S
Sbjct: 489 -QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

PyMOL of 1jdh

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644	Back alignment and structure

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354	Back alignment and structure

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78	Back alignment and structure

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510	Back alignment and structure

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510	Back alignment and structure

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458	Back alignment and structure

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458	Back alignment and structure

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85	Back alignment and structure

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968	Back alignment and structure

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810	Back alignment and structure

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584	Back alignment and structure

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457	Back alignment and structure

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457	Back alignment and structure

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281	Back alignment and structure

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778	Back alignment and structure

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233	Back alignment and structure

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233	Back alignment and structure

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233	Back alignment and structure

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267	Back alignment and structure

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253	Back alignment and structure

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1012
d1jdha_		529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	8e-14
d1jdha_		529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-08
d1jdha_		529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	8e-06
d1t1ha_		78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	1e-13
d1xm9a1		457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-10
d1xm9a1		457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-09
d1xm9a1		457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-07
d1xm9a1		457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-06
d2c2la2		80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	8e-07
d1q1sc_		434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-06
d1q1sc_		434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	4e-04
d1wgma_		98	g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu	7e-06
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	6e-05
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-04
d1jm7a_		103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	8e-05
d2vgla_		584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	1e-04
d1b3ua_		588	a.118.1.2 (A:) Constant regulatory domain of prote	4e-04
d1xqra1		264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	5e-04
d1wa5b_		503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	0.003
d1wa5b_		503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	0.004

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.0 bits (177), Expect = 8e-14
 Identities = 83/524 (15%), Positives = 177/524 (33%), Gaps = 43/524 (8%)

Query: 339 KLLSGIDSSELE-ALDQMQDLMRESSINKDWISIGGITDIIISILGSSHNKDVKMKILIT 397
           KLL+  D   +  A   +  L ++ +     +    +   I+  + ++++ +       T
Sbjct: 24  KLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGT 83

Query: 398 LKQLVKGHARNKEKVIDYGGWDHIVPCLG-RDPSISLAAVKLLYELMQDRSGWNVAVCRK 456
           L  L   H      +   GG   +V  LG    S+   A+  L+ L+  + G  +AV   
Sbjct: 84  LHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR-- 140

Query: 457 LSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQG 516
                 G+  +V L+     +        LQ L   ++E+      SG  + L++ +   
Sbjct: 141 ---LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY 197

Query: 517 AESSRILMMKALLS-MELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGC 575
                +     +L  + +  SN   + + G +  L   +   + +  +  L  L  LS  
Sbjct: 198 TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 257

Query: 576 SKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEP 635
           +  +E +    G    L      +V +      S +      + +               
Sbjct: 258 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ---------VG 308

Query: 636 IVTNLLTLQQNFNSSYNVRKPALRALFRI--CKSEAELVKIAVVKANGVSLILSLLD-DT 692
            +  L+          ++ +PA+ AL  +     EAE+ + AV    G+ +++ LL   +
Sbjct: 309 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS 368

Query: 693 DSEVREIAINLLFLFSHHE-------PEGVVEYLL------------KPKRLEALVGFLE 733
              + +  + L+   +           +G +  L+            +         F+E
Sbjct: 369 HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE 428

Query: 734 NDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRF 793
                ++     G L  L +   +  + +  L+ +   + +L S     +  A   L   
Sbjct: 429 GVRMEEIVEGCTGALHILARDVHNRIV-IRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 487

Query: 794 TDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLS 837
               + EA   +   G    L  LL   +      AAA++  +S
Sbjct: 488 A--QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

PyMOL of d1jdha_

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529	Back information, alignment and structure

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457	Back information, alignment and structure

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434	Back information, alignment and structure

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1012
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.89
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.89
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.78
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.77
d1t1ha_		78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.73
d2c2la2		80	STIP1 homology and U box-containing protein 1, STU	99.72
d1wgma_		98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.7
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	99.7
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	99.69
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.58
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.5
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.46
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.45
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.33
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.31
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.22
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	99.18
d1jm7a_		103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.17
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.15
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.12
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	99.12
d1rmda2		86	V(D)J recombination activating protein 1 (RAG1), d	99.11
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.09
d1jm7b_		97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.08
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.07
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.0
d2baya1		56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.0
d1ho8a_		477	Regulatory subunit H of the V-type ATPase {Baker's	98.84
d1fbva4		79	CBL {Human (Homo sapiens) [TaxId: 9606]}	98.77
d1ho8a_		477	Regulatory subunit H of the V-type ATPase {Baker's	98.23
d1g25a_		65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.21
d1bora_		56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.21
d1chca_		68	Immediate early protein, IEEHV {Equine herpesvirus	98.17
d1v87a_		114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	97.94
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.75
d1ur6b_		52	Not-4 N-terminal RING finger domain {Human (Homo s	97.74
d1iyma_		55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	97.63
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.53
d1vyxa_		60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	97.31
d3dplr1		88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	97.26
d1lrva_		233	Leucine-rich repeat variant {Azotobacter vinelandi	95.89
d1wima_		94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	95.71
d1lsha1		336	Lipovitellin-phosvitin complex, superhelical domai	83.22
d1upka_		330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	80.06

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=333.16  Aligned_cols=507  Identities=17%  Similarity=0.154  Sum_probs=406.8

Q ss_pred             CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHCCCC
Q ss_conf             068638999984059998899999999998831343001445502772110011136--873469999999998402588
Q 001796          371 IGGITDIIISILGSSHNKDVKMKILITLKQLVKGHARNKEKVIDYGGWDHIVPCLGR--DPSISLAAVKLLYELMQDRSG  448 (1012)
Q Consensus       371 ~~g~i~~Lv~lL~s~~~~~~~~~a~~~L~~la~~~~~~~~~i~~~g~i~~lv~lL~~--~~~~~~~A~~~L~~ls~~~~~  448 (1012)
                      ..+++|.|+++|++ .+..++..|+..+..+++.+...+..+...|.++.++++|.+  +...++.|+.+|.+++.+.. 
T Consensus        15 ~~~aip~L~~lL~~-~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~-   92 (529)
T d1jdha_          15 ATRAIPELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE-   92 (529)
T ss_dssp             --CHHHHHHHHHTC-SCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH-
T ss_pred             HHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCH-
T ss_conf             99799999998729-9999999999999999845577899987133999999998479999999999999999958916-


Q ss_pred             CHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             60776334321047499999983399977899999999984217924578774139909889998118948999999999
Q 001796          449 WNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKAL  528 (1012)
Q Consensus       449 ~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~~~~~a~~aL  528 (1012)
                          . +..+.+.|+++.|+.+|++++.+++..|+.+|.+++..++..+..+.+.|++++|+.+|.+++...+..++.+|
T Consensus        93 ----~-~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L  167 (529)
T d1jdha_          93 ----G-LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL  167 (529)
T ss_dssp             ----H-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred             ----H-HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             ----6-99999879899999985797989999999999986513201136787658814899988705768888889999


Q ss_pred             HHCCC-CCCHHHHHHHCCCHHHHHHHHCCCC-HHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHCCCCCHHHHH
Q ss_conf             85014-6540557530697277876302799-657999999999850897407899972995999998514899815899
Q 001796          529 LSMEL-VDSNLELLGKEGIIPPLLGLVGSGN-FQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIV  606 (1012)
Q Consensus       529 ~~Ls~-~~~n~~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~  606 (1012)
                      .+++. +.+++..+.+.|++++|+.++...+ ..++..++.++.+++.+++++..+++.|++++|+.++.+.+.  ....
T Consensus       168 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~--~~~~  245 (529)
T d1jdha_         168 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ--RLVQ  245 (529)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCH--HHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCH--HHHH
T ss_conf             88763004788888760563689999986104899999999875110133233045654333469998625401--5553


Q ss_pred             HHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHH
Q ss_conf             99999999521394230033588434067899999997414988321899999999821485489999998118599999
Q 001796          607 KCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLIL  686 (1012)
Q Consensus       607 ~a~~~L~nLa~~~~~~~i~~~g~~l~~~~~i~~Li~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~i~~Li  686 (1012)
                      .++++|.+++.....        .....+.++.|+.++.+.  ++.++..++.+|++++..++. .+..+.+.|+++.++
T Consensus       246 ~a~~~l~~ls~~~~~--------~~~~~~~i~~Lv~ll~~~--~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~~~i~~Li  314 (529)
T d1jdha_         246 NCLWTLRNLSDAATK--------QEGMEGLLGTLVQLLGSD--DINVVTCAAGILSNLTCNNYK-NKMMVCQVGGIEALV  314 (529)
T ss_dssp             HHHHHHHHHHTTCTT--------CSCCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTTCHH-HHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHCCCCCCC--------HHHHHHCCHHHHHHCCCC--CHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHH
T ss_conf             015677750432110--------256640101445412454--288999999988750122037-888888750078999


Q ss_pred             HHHC--CCCHHHHHHHHHHHHHHCCCCCCC--HHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             9431--899789999999999822689941--688640599838899750379845799999999851698997988999
Q 001796          687 SLLD--DTDSEVREIAINLLFLFSHHEPEG--VVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKL  762 (1012)
Q Consensus       687 ~ll~--~~~~~v~~~a~~~L~~Ls~~~~~~--~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~A~~aL~nL~~~~~~~~~~l  762 (1012)
                      .++.  ..++.+++.++.+|++++......  ....+...++++.|+.++..++....+..++++++|++.+ +..+..+
T Consensus       315 ~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~-~~~~~~l  393 (529)
T d1jdha_         315 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPL  393 (529)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHH
T ss_pred             HHHHHHHCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCHH-HHHHHHH
T ss_conf             999840011137889998850022000000035666776456124789871531278999999987500003-5666666


Q ss_pred             HHHCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf             96036999999960898258999999997436989888889999819979999997229999999999999754027967
Q 001796          763 IELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPK  842 (1012)
Q Consensus       763 ~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~  842 (1012)
                      .+.|+++.|++++.++....+..+..+..........                     ...++...++.+|.+++.    
T Consensus       394 ~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~al~~la~----  448 (529)
T d1jdha_         394 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV---------------------RMEEIVEGCTGALHILAR----  448 (529)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHC-----------CBTTB---------------------CHHHHHHHHHHHHHHHTT----
T ss_pred             HHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC---------------------CHHHHHHHHHHHHHHHCC----
T ss_conf             5326579999998667889999998603467764121---------------------319999999999999844----


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             86689998643348999854533478668876304421585047997304788387999999999975102203255774
Q 001796          843 FTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVL  922 (1012)
Q Consensus       843 l~~~~~~~~~~c~~~~~~~~c~~~~~~c~~~~~~~lv~agai~~Lv~lL~~~~~~v~~~Al~aL~~L~~d~~~~~~~~~i  922 (1012)
                                            ..      .++..+.+.|++++|+++|+++++.++..++.+|++|+.+   +++.+.+
T Consensus       449 ----------------------~~------~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~---~~~~~~i  497 (529)
T d1jdha_         449 ----------------------DV------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD---KEAAEAI  497 (529)
T ss_dssp             ----------------------SH------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS---HHHHHHH
T ss_pred             ----------------------CH------HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCC---HHHHHHH
T ss_conf             ----------------------98------8899999788899999986799989999999999998659---4669999


Q ss_pred             HHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             21678168999731399246768999999982
Q 001796          923 HQEEAIKPTLEILTWGTDSLKEEALGFLEKVF  954 (1012)
Q Consensus       923 ~~~~~v~~L~~ll~s~~~~~~~~a~~aL~~l~  954 (1012)
                      .+.|+++.|++++.++++.+++.|+.+|.++.
T Consensus       498 ~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~ls  529 (529)
T d1jdha_         498 EAEGATAPLTELLHSRNEGVATYAAAVLFRMS  529 (529)
T ss_dssp             HHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred             HHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf             98888999999857999999999999999749

PyMOL of d1jdha_

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}	Back information, alignment and structure

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}	Back information, alignment and structure

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}	Back information, alignment and structure

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure